<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-26 22:41:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E347153" ref_strand="+" ref_description="SGN-E347153 [cTOF-25-O15]">
      <seq>aacggtaaatccagacctatgaggaggaaatgcagtaatgtaagatcgtatttgacaaatggtaccattaatgttgagtatgtcaaatcttgtgataatcttgcagatcctcttacgaaggtcttaacaagagaaaaggtctggagcacatcgagggggataggattgaagcctacaaatccttcagtcatatatgaggaaactcaacctgnggaatagagatcctataaccaggttcaaagggaaaaactaatcatatgatgacttgttatgaaaaatacactattttttccctccctatgatgtgagtgcatttgttcctatagtttgtgaaggttgagttgataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="6475" stop="7425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6775" g_stop="7125" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E347153" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6775" e_stop="7125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGCCTTAACAAGAGAAAAGTCCTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATCCTTGAGTCATATATGAGGAAACACAACCTGGGGAATAGATATCCTATAACCACGTTCAAAGGGAAAAACTAATCATATGATGACTTTTTGTGAAAAATGCACTATTTTTCCCCTCCCTATGATGTGAGTGCATTGTTTCCTGTAGTTTGTGAAGGTTGAGTTGATAAAAA</genome_strand>
        <mrna_strand>AACGGTAAATCCAGACCTATGAGGAGGAAATGCAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGTCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATAGGATTGAAGCCTACAAATCCTTCAGTCATATATGAGGAAACTCAACCTGNGGAATAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTATGAAAAATACACTATTTTTTCCCTCCCTATGATGTGAGTGCATTTGTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="14262" stop="15517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14562" g_stop="15217" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14562" e_stop="15217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAACCAGGTTCTTACTTATGTTAGCGGGTTATCTGATTAGGGACAGACACCTCCAGTGTTTTCTGCATCAGCACCTCAGGTTCCGGTAATACAACATGCAGCTGCTGTGGCTCCCCGCATGGATGCCTTATTGGAAGTAGGCATGTTTCCTCGATTGACTACAAGGTCTATAATGACGAGTAATCAACATGAACTTTTCACTAAATTCTTAAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGCTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAATGATTCGGTGTTGAGTTTGTGACCTACCAGTTTTAGGGGAATGCCAAAATGTGGTGGCAGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGAAGAAATATATACCCTAGACTTTGAGGGACAAGAAGAGAGATGAGTTCCTGAGCCTACTGTAAGGCAGGATGTTTGTTACTACTTATGAGGCTAAATTTCGGGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCTTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCTTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E394130" ref_strand="-" ref_description="SGN-E394130 [TUS-40-N13]">
      <seq>tggaggttctgggaactttgtggcatggaggaaggttttaacccagttcaattcatatacatcgatcctacggtgattatagattatacatgtaaagctttattgaaggaacaacttaaagttttggcttctggatttatcgtcatctgaagaatcatcaatgcatcactgttgtttctgtggtaacattcagtttacgatggtagttagtaagtaaattgaaaggctttgcgccattggtgtcagattttgggttttcaaatttcttgttgtaccctagattttaccgctgcttgattagttttactactcccatcctgttccattttactttgattgtcatagttgacttgacacaacttaattcaaaaatgaaagcattgatcttaaacataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="29152" stop="28150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28852" g_stop="28459" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="409"/>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E394130" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394130" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28852" e_stop="28459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGTTCTGGGAACTTTGTGGCATGGAGGAAGGTTTTAACCCAGTTCAATTCATATACATCGATCCTACGGTGATTATAGATTATACATGTAAAGCTTTATTGAAGGAACAACTTAAAGTTTTGGCTTCTGGATTTATCGTCATCTGAAGAATCATCAATGCATCACTCTTGTTTCTGTGGTAACATTCAGTTTACGATGGTAGTTAGTAAGTAAATTGAAAGGCTTTGCGCCATTGGTGTCAGATTTTGGGTTTTCAAATTTCTTGTTGTACCCTAGATTTTACCGCTGCTTGATTAGTTTTACTACTCCCATCCTGTTCCATTTTACTTTGATTGTCATAGTTGACTTGACACAACTTAATTCAAAAATGAAAGCATTGATCTTAAACAT</genome_strand>
        <mrna_strand>TGGAGGTTCTGGGAACTTTGTGGCATGGAGGAAGGTTTTAACCCAGTTCAATTCATATACATCGATCCTACGGTGATTATAGATTATACATGTAAAGCTTTATTGAAGGAACAACTTAAAGTTTTGGCTTCTGGATTTATCGTCATCTGAAGAATCATCAATGCATCACTGTTGTTTCTGTGGTAACATTCAGTTTACGATGGTAGTTAGTAAGTAAATTGAAAGGCTTTGCGCCATTGGTGTCAGATTTTGGGTTTTCAAATTTCTTGTTGTACCCTAGATTTTACCGCTGCTTGATTAGTTTTACTACTCCCATCCTGTTCCATTTTACTTTGATTGTCATAGTTGACTTGACACAACTTAATTCAAAAATGAAAGCATTGATCTTAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E235821" ref_strand="+" ref_description="SGN-E235821 [cLED-15-H17]">
      <seq>gatcctctgtgtactttcctctatgatacatcgcgtcctaaacttattcacgaaacaaacctggatgttctttgtgaactggttaatatcctcaaagttgaagttctaggagaacagctgagcagacggaggaagtcattggctgggttacctccaacgctagacaggattctagctaatgttcatgaacgattaacttttcgtgctcgcacctatatccgtgatgagattgcaaattatcttccttcagacgaggatctgggattaccctaagaagttggagcaatctgtttcagcagaactggattcaccatctaagtttgcattctcttgtgaaggttgcagtttgatatatggaggttctgtaaatcaatatcttgctcaagggtgtgaactgactattcttgacctgtgattctagttggatgcatatattccatttttatatttgtgcaggactaatatattagaagcacacgtttaggtgctatcccttctgaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="31176" stop="28753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30876" g_stop="30657" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="228" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30656" i_stop="29467" i_length="1190">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29466" g_stop="29379" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="316" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29378" i_stop="29245" i_length="134">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29244" g_stop="29053" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="508" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E235821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30876" e_stop="30657"/>
          <exon e_start="29466" e_stop="29379"/>
          <exon e_start="29244" e_stop="29053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGAGGAAGTCATTGGCTGGGTTACCTCCAACGCTAGACAGGATTCTAGCTAATGTTCATGAACGATTAACTTTTCGTGCTCGCACCTATATCCGTGATGAGGTAACATCCCAAGTATTGCTCGGACATTTTATTTAAATGCTGTTTGGCGACTTATCTGTTACTCGGACATGAGATGATATTATCACTTAATCAGCACCCTCGTGGATGAATGAGTAGTGCCAAAATTAGTTACTGGATAAATTAGGCATTCGTTTCCTGTTGCATTGATTTTGGTTAAATTAGGCCTCATGGTATATACCGTATACTATTGCTCATAGCTTAGCGTTTTCTCTTTATTGTTCTCTTAGCTGCACTATCTTCCATTGTTGTGATACGTAGTACCTTCAAACAAAATCGCCCATCAGTGGAAGTGAGTAATTCTCCATTGGAGTTTGAAGCTTTTATATTTTCCATTCTTTCTTATGATCAGGTTATCATGATAGCTTTCTCGAAAGTTGATTCTTGCGCGGTGGGAGGAATATGCTTTGTGGCAGACTTCTGACAATTGGACATATCAAATAGGCTCTTGAGTGAATTATACCAATTTATGTGACGTTAAGTAACCTTTTGGAATTTGAATCTAGTATGTACTTCATCCTTTTCTGAAATACTTAGTTTCACTTGTGTTGGAGATAATAAGGAAAAATGAAAATTTAGAAGGTTGTAGATTATAGTTTCCCTTTTATAGCCTTGAATAATTTTATAAAAAGGCACTATGGTTGTGCTACCTAGGTACAAAAAGAGCACCCAACATCTGATTTATTTACAAGTTTATGGAAAAACATGGGCCTATCCATCATTGTGAGGGAACTTTTCATGTTTACCTTATTTTTGGTACTGTTGATTTGGTATTTGTTCAATGTTCATTCGGCTCCGAGATAATATTTTCTCCTCCCTCCATATTTCCGTTTTCTACTCCGTGCATCATTTGTTTGGATTAACAATGCAAAGTGGTATGATCTTCAATGTTGTATAACGTTCGCTTGAGATGTCTTTAAATGAGAAACATGGTCAGTGATGATTGTAGTAGTTGTTGCTAGGAGTTCTAATGGATTTGTATGGAGATGCAAAATGTCTATTAAATATGATAAATTGGGATTGATAAGAGAAAGAATTAGACCATATAAGTTGGGATGAATGGAGTAAGGAGCACATATGTATGTTTGGTTTCTGTATGCTTGAATTTCCTTACAAGTAACCAGTGGTCTACAAATAATTTGGTCTGATTTCTTTCCCTGCTTTGTTTTCAGATTGCAAATTATCTTCCTTCAGACGAGGATCTGGGATTACCCTAAGAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCTGTAAGTACCAAATTCTTTGTCCTGTGACGGGCATTCAGTTGATTTTTGTAACATATATCTTTAAAGGAATTAAGAGCTAGGACAACTTTTATATGTATCTTTATTTTTGGGGGTCTGTAATTTTTTTGGTGCAGAAGTTTGCATTCTCTTGTGAAGGTTGCAGTTTGATATATGGAGGTTCTGTAAATCAATATCTTGCTCAAGGGTGTGAACTGACTATTCTTGACCTGTGATTCTAGTTGGATGCATATATTCCATTTTTATATTTGTGCAGGACTAATATATTAGAAGCACACGTTTAGGTGCTATCCCTTCTGAAAAAAGAA</genome_strand>
        <mrna_strand>GTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGAGGAAGTCATTGGCTGGGTTACCTCCAACGCTAGACAGGATTCTAGCTAATGTTCATGAACGATTAACTTTTCGTGCTCGCACCTATATCCGTGATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAATTATCTTCCTTCAGACGAGGATCTGGGATTACCCTAAGAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCT......................................................................................................................................AAGTTTGCATTCTCTTGTGAAGGTTGCAGTTTGATATATGGAGGTTCTGTAAATCAATATCTTGCTCAAGGGTGTGAACTGACTATTCTTGACCTGTGATTCTAGTTGGATGCATATATTCCATTTTTATATTTGTGCAGGACTAATATATTAGAAGCACACGTTTAGGTGCTATCCCTTCTGAAAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E265693" ref_strand="+" ref_description="SGN-E265693 [cLEI-11-A1]">
      <seq>tcaggctgcaataagaagcagcggtggtaacaagacatcttttgccgagggtgtagagccatctataatatatgtacgattcaaggctgcagcaaatgagcttaagcctatcctggaggaaattgaaagcagaacacctagaaaagagtatattcaacttcttgaagaatgccacaaactctattgcgaacagcgcctttccttgataagaggtatagtgcaacagcggatctctgaattttctaggaaagaagcattgtcgtctttaactagatctggatgtgcatatttaatgcaggtgtgtcagctggagcatcaactcttcaatcacttctttccatcatcttcagaggacatttcgagtttgactcctcttgtagatcctctgtgtactttcctctatgatacatcgcgtcctaaacttattcacgaaacaaacctggatgttctttgtgaactggttaatatcctcaaagttgaagttctaggagaacagctgagcagacggaggaagtcattggctgggttacctccaacgctagacaggattctagctaatgttcatgaacgattaacttttcgtgctcgcacctatatccgtgatgaggttatcatgatagctttctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="36194" stop="29966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35894" g_stop="35795" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35794" i_stop="35627" i_length="168">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35626" g_stop="35522" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="205" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35521" i_stop="35412" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35411" g_stop="35319" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="298" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35318" i_stop="34782" i_length="537">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34781" g_stop="34693" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="387" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34692" i_stop="30877" i_length="3816">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30876" g_stop="30657" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="607" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30656" i_stop="30287" i_length="370">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30286" g_stop="30266" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="628" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E265693" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35894" e_stop="35795"/>
          <exon e_start="35626" e_stop="35522"/>
          <exon e_start="35411" e_stop="35319"/>
          <exon e_start="34781" e_stop="34693"/>
          <exon e_start="30876" e_stop="30657"/>
          <exon e_start="30286" e_stop="30266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAGGTAATATTGGAACATCTCCTTGCCTTTTAGTTAGTAGAATAGAAACTCTATTAATTCGTTGTATGGCAGTGAGTATTTCTAATCTCAAAAAAAAAAAAAAAAAGAGAAAGAAACTAGGACTAGCTTTTACGTGTAATCCATGAACCAAATGAACCTAGTTACCTGCAGCTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTGGTAAGTAGTAAGCTGCTCCTTTCAGTTCTATATATATAATTAAATATATGGTTTTTTTCTTCTCCTTCTTTCATCGTTAATCAATACTCGTTCTGTTTCATTTAATTCAGATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAGGTACATTCAATGACATCAGTAATATTTACAACATTTTGTACTAGAGCATGGTATGATTGTTATATCTTGCCTTACAAAAATTGGATGACTGTTCTTTTTGTGGTGTTTGGTGGGGGTATAAGAAGAAGATGAAAAGAGACAATTCGAGGTTGACCTACCAGTTTTGATAGTCATATGAGCAATCGACATCATTTTTCTTTTATTTGACAGGATTAATTCAAAGTAATTAGTTCTCATTCTCAAAAAAATCAAAGTAATTTGTTGTAAATAAGAGAGCCACTCCTTATTTTTTCTTTCAACAGTTAGCTCATGTTAGTGTAGATGAATATTTCCTCTAATTGGATTTAGGATAAATGTGCTAAAACTATAACAGCCTTGATTTCTTTGAGGGTGGAATCATAACTTCTATATATTTTTCTATGAATCACTATTGTCAAAGTAAATATCTGATGTTGCTTCAGACAGTTTTTCTAAAGGTATATATGGGTAAACTGTGATATATGTCTCCATACCTTACGTTTGACATCGTAAATGCAGGTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCTGTGAGTTGCTTAACTTCTCTTGTGGGGTTCCTTCTGCATTTGAACAATTTTTGCTTCTTACTGATTTCCTTTCCCACTTCTTCTTTTCTAGTTTGCTTCTTTTTTCCTTTTCTTGTCTTGGTTTGTTTGGGGGTGGGGGAGGTTTGGATTATCTGTATTGTTTTTCACGCGACTTGTAAACAAGAGAGCCGCAACATAGCAAAATTTTTGTGCCAGTAAGACTTTGCTATTTTGGTAGCTTGTGCCATGCTTAAACCTTCTTAGGCCAGAGTTGCTATCAGCGGTAAGTGTGTGTAAACATTTTCAGACATTATTTGTGTGCTAATAAAAATCAGTGTGGACCATGAGGCTGCCCAATAGCTTAGTGATTGTCACTTTAGATCTTAGGGCTAGCACAAGATAAGTTCCTGGTTTGGAATTTGAAGCAGTCCTGAGGGATGTACAGCTATCTATTCCTCTGAAAGAGCTGCTCAGATTTCCCTCTGGTTTAGATTTGCAGGTTGCTCTGGCCATCAGTTATGAATATGTGCTATGTTTATATATCAAGTTAGTCTGGTCATCATTTGCTTCTGCTTCAACTGCTTTTATGACCTTAAATCTTTGGCTTTGAGATACAAATGTGGAGGTTAAATGTGAAAGTTATAGTAAATTCAAGCGAACCTGGTATTTCAAGTATATGCGTTCACTTATTCTCCAAAACATAAGTATAAGCTTTAACTCAAAAGGTGGTTAAACAACTACTTTTTGATAAAGAAGGTAGCAGAGAAATTATTTAAGTGAAGATTAAAGGGTTGGCTCATCACCTATTAAGAGTTTCAAAATGTGTGTTTGTTGCCCTTAATATTTGTCGGTTAGGTAAAAAAGCATCTTCTACGTCCAAAAAAGTAAAATCATGAAGTCTGGTAAAGCCTCATTTGTCTTCACTAAGCTGAGGATGTTCGGATTAAGTACACATCTAAATATTAAGATTTAGATATCTGAATCTGAATGCACATGAATATTTAAGATGTATTAAAAACTATATACTAAATGTTTAGGACGGTTTGATTTTCAAAAATTGAACATATTAATGTTTTTATTTATAAATTAATAAATATGAAGTTAAAAAACAAAATACTATATTTATCTCCTATTGTATCTTTAAAAAATTATATGGTGTTGGAGGTGGTGATTTCTCGTGGTGGTGGTTGTGAGTAGTAGCTAGTTGTGATGGTCGGTAGTTAGTAGTGGCGGCTAATAGTTTTGTAGTGGATAATAGTAATAGTTATTGGTGGTGATGAATGATAATGGTGGTTTGACTATACATAGCGGTGATTGTCAGTAGTGATTAATATTTGTTGTGGTAATGGTTGTTGGTGCTGGCAATTGTAAATGTGCTGTCAATAACCAACCCAAACCTAATTGGTTTGGATTTAATTTTGCCACCCCTATTCAAACCCATTTAATTTTTCTTTCTTATTAAATAACATATAAAATCAAAGAAAAAAAATTAAAAATATTTTAACAAAATTTCTCAAAAATCATTTTGTTTTACATATCAACTCAATTTTTAATGGGTTGAAATGGTTTGGGTTGAGCAAACAAATGGGCGGTCAATAACCAACCCAAACTTAAATGGGTTGGGTTTAATTTTTCCACCCTATTCAAACCCATTTAGTGCTTGTAACATGAAAAAAAAATGTACTTAATGATTGACATTTGAATGATTCAGATCTAAAAACCAAACGGACTTAATGACTGACAAATGAATGGTTAAGATTAAGACTATTATTAAATGCAAACAGATGAGGCCTAAGGAAACCTAATTGTTGTCAGTTACTACGTGTGATGTGTTTCTTTGTGATATGCTGACTTCTCTTACTATCTGGGGCTTCCAGTCACTCGGAGCGCAAAGCGGTAAAAACTGACACGGTCCCGCTTCAAGCTTTAAGTGAAGTGCTTGCTTCATTGAAGTGAAATCAAAAGAAAAAAGACCAAAATAAATAGAGACAAAATATATAAGAAAAAATTCATATTAAAACCAAATAAAGGCCCCCTTTATTTCCTTGTCACAAAACAGACATACTATTCTTATCCTATTGGTATCACCAACTTTTTTCCCATATTTTCATCCCGGGCTAGCCATTTTACATCACGGATAAGATTTGAGAAAAATAATCAACACCTATATTTTTATCATTATAAAAGAAAAAATTCAACATTTTAGTCATTGTTAAGAAACAAAACAATTCAGCAATATATATTTGATCACTGTGAGGGAAAAAATTTCGGCAACATATAATTTAAATAATCAAAGCTATACATGACAAAGGAAAGCAGAGTAACGAAAAGAGTAGCAAAAAAGAAGAAAGTCCTAGCTAGCAGTGCCACTGCACCAAAATGAAGAAGAAAGAAGAGAAAACGAAGAAAGAAAAGAGAAAAAGTACTGGAAGGAAAAAGTACACAGAAACTTTACTATTCTAATTTCTTAAGGATTAGGTAAGTCATACCTCTTTTTATTATTTAAAGGTGACCACTTCCTAATTTTTTAAAAAAAACCGCTGCTTTTCTCGCTTCACCGCTTCTGGTCGCATCGCGCTTCAAGCCCAGAAGCAGCCGCTTCTTTCACATGCCTCGCTTCAGCTGGCTGAAGTGCTGAACTCTCGCTTCGCTTCACTGCTTAAAGCGATGAAGCACTTGCTTTCCTGAACACTGCCCCCATGGGTGATATATGAAATGAGATGTCCATTATACCTATACCTTTCTTTTGGTTCATAAGTTCTCTTTTTTCCTTCTCTGGTATTTTAATGTACATGTATGTCCTTCCTGATTGTGGGGCAGAGAGATAGAAAGCCTTGCACTTTTATCCATCAAAATTTGACCTCGAATATAAGCTGTACCATATTTATAGTTTTTCTTGTCAAGTTAATGTGATTAGATAATATCAATGGAGGGAGTTACAGTTACTGATAGTCGAATCTAATGGCAGATTTCAGTGTTAGTAAGTTAATCAGCAGTGAAACATGTACCTTTCATATATGAGAAGGTAATGGAACGTGTTATTTGGTTCACTTGATAACATTACTTTTTATCTTTGCTCCATTCTAGTAATTGGAGATTCGCAATCAGATATTCTCTACCCCCTGCATTCTCAAGCTACATTTCTACTTGCCTCCTTTATTTATAAATATTCTTATTTATGTAGTCCATGATAAGTCATGTTTTTGAGCTTATGTCCTCTGCATAACATGATATGAATATTCTGTGCATAGCATATATATCCATGTGCTCCCACCCCATCTCTCAGTTGGTCCAATTACAAGCAGTTTAATGAAGCGTTGACATGTTATACTCCCTCCATCCCGTTTTAGGTTATGGTGTTTACTGAGCATGGAGTTTAAAAAAGAAAGAAAGAGTTTGAAAATTTTGGTCTATAGTAGGCCCACTTAGTCTACCCTTGAGCTGAGGGTCTTTCGGAAACAACCTTTCTACCTACACAAGGTAGTGGTAAGGTCTGCATTCACTCTACCTTCCCCCGATCCCACTTAGTGGGATTCCATTGGATATGTTGTTGTTGTGATCTATAACAGACCATAGACACTTGTATGACAATAAATAATATCATTAAGGTTAGAAATGCAAGTTTAAAGGAAAAGTTGTCAATTCTTTTTTGGATAGACGAACAAGGAAAATGTGTTGTATAAAAATTGGACAAAGGAAATACTGTCTATATGCCCCTGAAGCTGCTGGAATTTGAGCTTTTTTTTTTTTTTTTAATGATAAGTAGCTTGATCTCTATGTCTCTTAAGGTTACAATTACCTCCCTACAAACTGCAGGTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGAGGAAGTCATTGGCTGGGTTACCTCCAACGCTAGACAGGATTCTAGCTAATGTTCATGAACGATTAACTTTTCGTGCTCGCACCTATATCCGTGATGAGGTAACATCCCAAGTATTGCTCGGACATTTTATTTAAATGCTGTTTGGCGACTTATCTGTTACTCGGACATGAGATGATATTATCACTTAATCAGCACCCTCGTGGATGAATGAGTAGTGCCAAAATTAGTTACTGGATAAATTAGGCATTCGTTTCCTGTTGCATTGATTTTGGTTAAATTAGGCCTCATGGTATATACCGTATACTATTGCTCATAGCTTAGCGTTTTCTCTTTATTGTTCTCTTAGCTGCACTATCTTCCATTGTTGTGATACGTAGTACCTTCAAACAAAATCGCCCATCAGTGGAAGTGAGTAATTCTCCATTGGAGTTTGAAGCTTTTATATTTTCCATTCTTTCTTATGATCAGGTTATCATGATAGCTTTCTCG</genome_strand>
        <mrna_strand>TCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTGTAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAG........................................................................................................................................................................CTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTG..............................................................................................................ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGAGGAAGTCATTGGCTGGGTTACCTCCAACGCTAGACAGGATTCTAGCTAATGTTCATGAACGATTAACTTTTCGTGCTCGCACCTATATCCGTGATGAG..................................................................................................................................................................................................................................................................................................................................................................................GTTATCATGATAGCTTTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E266187" ref_strand="+" ref_description="SGN-E266187 [cLEI-3-I11]">
      <seq>tcaggctgcaataagaagcagcggtggtaacaagacatcttttgccgagggtatagagccatctataatatatgtacgattcaaggctgcagcaaatgagcttaagcctatcctggaggaaattgaaagcagaacacctagaaaagagtatattcaacttcttgaagaatgccacaaactctattgcgaacagcgcctttccttgataagaggtatagtgcaacagcggatctctgaattttctaggaaagaagcattgtcgtctttaactagatctggatgtgcatatttaatgcaggtgtgtcagctggagcatcaactcttcaatcacttctttccatcatcttcagaggacatttcgagtttgactcctcttgtagatcctctgtgtactttcctctatgatacatcgcgtcctaaacttattcacgaaacaaacctggatgttctttgtgaactggttaatatcctcaaagttgaagttctaggagaacagctgagcagacgggagaagtcattggctgggttacctccaacgctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="36194" stop="30422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35894" g_stop="35795" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35794" i_stop="35627" i_length="168">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35626" g_stop="35522" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="205" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35521" i_stop="35412" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35411" g_stop="35319" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="298" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35318" i_stop="34782" i_length="537">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34781" g_stop="34693" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="387" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34692" i_stop="30877" i_length="3816">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30876" g_stop="30722" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="542" r_length="155" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E266187" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35894" e_stop="35795"/>
          <exon e_start="35626" e_stop="35522"/>
          <exon e_start="35411" e_stop="35319"/>
          <exon e_start="34781" e_stop="34693"/>
          <exon e_start="30876" e_stop="30722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAGGTAATATTGGAACATCTCCTTGCCTTTTAGTTAGTAGAATAGAAACTCTATTAATTCGTTGTATGGCAGTGAGTATTTCTAATCTCAAAAAAAAAAAAAAAAAGAGAAAGAAACTAGGACTAGCTTTTACGTGTAATCCATGAACCAAATGAACCTAGTTACCTGCAGCTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTGGTAAGTAGTAAGCTGCTCCTTTCAGTTCTATATATATAATTAAATATATGGTTTTTTTCTTCTCCTTCTTTCATCGTTAATCAATACTCGTTCTGTTTCATTTAATTCAGATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAGGTACATTCAATGACATCAGTAATATTTACAACATTTTGTACTAGAGCATGGTATGATTGTTATATCTTGCCTTACAAAAATTGGATGACTGTTCTTTTTGTGGTGTTTGGTGGGGGTATAAGAAGAAGATGAAAAGAGACAATTCGAGGTTGACCTACCAGTTTTGATAGTCATATGAGCAATCGACATCATTTTTCTTTTATTTGACAGGATTAATTCAAAGTAATTAGTTCTCATTCTCAAAAAAATCAAAGTAATTTGTTGTAAATAAGAGAGCCACTCCTTATTTTTTCTTTCAACAGTTAGCTCATGTTAGTGTAGATGAATATTTCCTCTAATTGGATTTAGGATAAATGTGCTAAAACTATAACAGCCTTGATTTCTTTGAGGGTGGAATCATAACTTCTATATATTTTTCTATGAATCACTATTGTCAAAGTAAATATCTGATGTTGCTTCAGACAGTTTTTCTAAAGGTATATATGGGTAAACTGTGATATATGTCTCCATACCTTACGTTTGACATCGTAAATGCAGGTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCTGTGAGTTGCTTAACTTCTCTTGTGGGGTTCCTTCTGCATTTGAACAATTTTTGCTTCTTACTGATTTCCTTTCCCACTTCTTCTTTTCTAGTTTGCTTCTTTTTTCCTTTTCTTGTCTTGGTTTGTTTGGGGGTGGGGGAGGTTTGGATTATCTGTATTGTTTTTCACGCGACTTGTAAACAAGAGAGCCGCAACATAGCAAAATTTTTGTGCCAGTAAGACTTTGCTATTTTGGTAGCTTGTGCCATGCTTAAACCTTCTTAGGCCAGAGTTGCTATCAGCGGTAAGTGTGTGTAAACATTTTCAGACATTATTTGTGTGCTAATAAAAATCAGTGTGGACCATGAGGCTGCCCAATAGCTTAGTGATTGTCACTTTAGATCTTAGGGCTAGCACAAGATAAGTTCCTGGTTTGGAATTTGAAGCAGTCCTGAGGGATGTACAGCTATCTATTCCTCTGAAAGAGCTGCTCAGATTTCCCTCTGGTTTAGATTTGCAGGTTGCTCTGGCCATCAGTTATGAATATGTGCTATGTTTATATATCAAGTTAGTCTGGTCATCATTTGCTTCTGCTTCAACTGCTTTTATGACCTTAAATCTTTGGCTTTGAGATACAAATGTGGAGGTTAAATGTGAAAGTTATAGTAAATTCAAGCGAACCTGGTATTTCAAGTATATGCGTTCACTTATTCTCCAAAACATAAGTATAAGCTTTAACTCAAAAGGTGGTTAAACAACTACTTTTTGATAAAGAAGGTAGCAGAGAAATTATTTAAGTGAAGATTAAAGGGTTGGCTCATCACCTATTAAGAGTTTCAAAATGTGTGTTTGTTGCCCTTAATATTTGTCGGTTAGGTAAAAAAGCATCTTCTACGTCCAAAAAAGTAAAATCATGAAGTCTGGTAAAGCCTCATTTGTCTTCACTAAGCTGAGGATGTTCGGATTAAGTACACATCTAAATATTAAGATTTAGATATCTGAATCTGAATGCACATGAATATTTAAGATGTATTAAAAACTATATACTAAATGTTTAGGACGGTTTGATTTTCAAAAATTGAACATATTAATGTTTTTATTTATAAATTAATAAATATGAAGTTAAAAAACAAAATACTATATTTATCTCCTATTGTATCTTTAAAAAATTATATGGTGTTGGAGGTGGTGATTTCTCGTGGTGGTGGTTGTGAGTAGTAGCTAGTTGTGATGGTCGGTAGTTAGTAGTGGCGGCTAATAGTTTTGTAGTGGATAATAGTAATAGTTATTGGTGGTGATGAATGATAATGGTGGTTTGACTATACATAGCGGTGATTGTCAGTAGTGATTAATATTTGTTGTGGTAATGGTTGTTGGTGCTGGCAATTGTAAATGTGCTGTCAATAACCAACCCAAACCTAATTGGTTTGGATTTAATTTTGCCACCCCTATTCAAACCCATTTAATTTTTCTTTCTTATTAAATAACATATAAAATCAAAGAAAAAAAATTAAAAATATTTTAACAAAATTTCTCAAAAATCATTTTGTTTTACATATCAACTCAATTTTTAATGGGTTGAAATGGTTTGGGTTGAGCAAACAAATGGGCGGTCAATAACCAACCCAAACTTAAATGGGTTGGGTTTAATTTTTCCACCCTATTCAAACCCATTTAGTGCTTGTAACATGAAAAAAAAATGTACTTAATGATTGACATTTGAATGATTCAGATCTAAAAACCAAACGGACTTAATGACTGACAAATGAATGGTTAAGATTAAGACTATTATTAAATGCAAACAGATGAGGCCTAAGGAAACCTAATTGTTGTCAGTTACTACGTGTGATGTGTTTCTTTGTGATATGCTGACTTCTCTTACTATCTGGGGCTTCCAGTCACTCGGAGCGCAAAGCGGTAAAAACTGACACGGTCCCGCTTCAAGCTTTAAGTGAAGTGCTTGCTTCATTGAAGTGAAATCAAAAGAAAAAAGACCAAAATAAATAGAGACAAAATATATAAGAAAAAATTCATATTAAAACCAAATAAAGGCCCCCTTTATTTCCTTGTCACAAAACAGACATACTATTCTTATCCTATTGGTATCACCAACTTTTTTCCCATATTTTCATCCCGGGCTAGCCATTTTACATCACGGATAAGATTTGAGAAAAATAATCAACACCTATATTTTTATCATTATAAAAGAAAAAATTCAACATTTTAGTCATTGTTAAGAAACAAAACAATTCAGCAATATATATTTGATCACTGTGAGGGAAAAAATTTCGGCAACATATAATTTAAATAATCAAAGCTATACATGACAAAGGAAAGCAGAGTAACGAAAAGAGTAGCAAAAAAGAAGAAAGTCCTAGCTAGCAGTGCCACTGCACCAAAATGAAGAAGAAAGAAGAGAAAACGAAGAAAGAAAAGAGAAAAAGTACTGGAAGGAAAAAGTACACAGAAACTTTACTATTCTAATTTCTTAAGGATTAGGTAAGTCATACCTCTTTTTATTATTTAAAGGTGACCACTTCCTAATTTTTTAAAAAAAACCGCTGCTTTTCTCGCTTCACCGCTTCTGGTCGCATCGCGCTTCAAGCCCAGAAGCAGCCGCTTCTTTCACATGCCTCGCTTCAGCTGGCTGAAGTGCTGAACTCTCGCTTCGCTTCACTGCTTAAAGCGATGAAGCACTTGCTTTCCTGAACACTGCCCCCATGGGTGATATATGAAATGAGATGTCCATTATACCTATACCTTTCTTTTGGTTCATAAGTTCTCTTTTTTCCTTCTCTGGTATTTTAATGTACATGTATGTCCTTCCTGATTGTGGGGCAGAGAGATAGAAAGCCTTGCACTTTTATCCATCAAAATTTGACCTCGAATATAAGCTGTACCATATTTATAGTTTTTCTTGTCAAGTTAATGTGATTAGATAATATCAATGGAGGGAGTTACAGTTACTGATAGTCGAATCTAATGGCAGATTTCAGTGTTAGTAAGTTAATCAGCAGTGAAACATGTACCTTTCATATATGAGAAGGTAATGGAACGTGTTATTTGGTTCACTTGATAACATTACTTTTTATCTTTGCTCCATTCTAGTAATTGGAGATTCGCAATCAGATATTCTCTACCCCCTGCATTCTCAAGCTACATTTCTACTTGCCTCCTTTATTTATAAATATTCTTATTTATGTAGTCCATGATAAGTCATGTTTTTGAGCTTATGTCCTCTGCATAACATGATATGAATATTCTGTGCATAGCATATATATCCATGTGCTCCCACCCCATCTCTCAGTTGGTCCAATTACAAGCAGTTTAATGAAGCGTTGACATGTTATACTCCCTCCATCCCGTTTTAGGTTATGGTGTTTACTGAGCATGGAGTTTAAAAAAGAAAGAAAGAGTTTGAAAATTTTGGTCTATAGTAGGCCCACTTAGTCTACCCTTGAGCTGAGGGTCTTTCGGAAACAACCTTTCTACCTACACAAGGTAGTGGTAAGGTCTGCATTCACTCTACCTTCCCCCGATCCCACTTAGTGGGATTCCATTGGATATGTTGTTGTTGTGATCTATAACAGACCATAGACACTTGTATGACAATAAATAATATCATTAAGGTTAGAAATGCAAGTTTAAAGGAAAAGTTGTCAATTCTTTTTTGGATAGACGAACAAGGAAAATGTGTTGTATAAAAATTGGACAAAGGAAATACTGTCTATATGCCCCTGAAGCTGCTGGAATTTGAGCTTTTTTTTTTTTTTTTAATGATAAGTAGCTTGATCTCTATGTCTCTTAAGGTTACAATTACCTCCCTACAAACTGCAGGTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGAGGAAGTCATTGGCTGGGTTACCTCCAACGCTAG</genome_strand>
        <mrna_strand>TCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAG........................................................................................................................................................................CTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTG..............................................................................................................ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGGAGAAGTCATTGGCTGGGTTACCTCCAACGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E249802" ref_strand="+" ref_description="SGN-E249802 [cLEF-57-H10]">
      <seq>ttctctctatctgttttttctatgtcctcctgtaaccagtctcgagctctgggaatgattcgctctcatgttctttccgttcttagaagtacttcttctcaggtccaggctgcaatacgaagcagtggtggtagcaaaacatcttttgccgagggtatagagtcatctataatatatgtacgcttcaaggctgcagcaaatgagcttaagcctatcttggaggaaattgaaagtagaacacctagaaaagagtatattcaacttcttgaagaatgccacaaactctattgtgaacagcgcctttccttgataagaggtatagtgcaacagcggatctctgaattttccaggaaagaagcactgtcgtctttaactagatctggatgtgcatatttaatgcaggtgtgtcagctagagcatcaacttttcaatcacttcttcccatcatcttcagaggacatttcgagtttgactcctcttgtagatcctctgtgtactttcctctatgatacattgcgtcctaaacttattcacgaaacaaatctggatgttctttgtgaactggttgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="36378" stop="30496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36078" g_stop="35978" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35977" i_stop="35897" i_length="81">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35896" g_stop="35795" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="204" r_length="102" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35794" i_stop="35627" i_length="168">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35626" g_stop="35522" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="309" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35521" i_stop="35412" i_length="110">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35411" g_stop="35319" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="402" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35318" i_stop="34782" i_length="537">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.906" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34781" g_stop="34693" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="491" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34692" i_stop="30877" i_length="3816">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30876" g_stop="30796" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="572" r_length="81" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E249802" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36078" e_stop="35978"/>
          <exon e_start="35896" e_stop="35795"/>
          <exon e_start="35626" e_stop="35522"/>
          <exon e_start="35411" e_stop="35319"/>
          <exon e_start="34781" e_stop="34693"/>
          <exon e_start="30876" e_stop="30796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTGTCTGTGTTACCTTGGCCCCCTTGTAA-CAGTCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTTAGAAGCACTTCTTCTCAGGTAAATCTGTCTTATGCACTACAATCTTTTCTTGCAGATGAATGGTTGCATATTCTGAGATAAATACACCCATTTTATCAGGTTCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAGGTAATATTGGAACATCTCCTTGCCTTTTAGTTAGTAGAATAGAAACTCTATTAATTCGTTGTATGGCAGTGAGTATTTCTAATCTCAAAAAAAAAAAAAAAAAGAGAAAGAAACTAGGACTAGCTTTTACGTGTAATCCATGAACCAAATGAACCTAGTTACCTGCAGCTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTGGTAAGTAGTAAGCTGCTCCTTTCAGTTCTATATATATAATTAAATATATGGTTTTTTTCTTCTCCTTCTTTCATCGTTAATCAATACTCGTTCTGTTTCATTTAATTCAGATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAGGTACATTCAATGACATCAGTAATATTTACAACATTTTGTACTAGAGCATGGTATGATTGTTATATCTTGCCTTACAAAAATTGGATGACTGTTCTTTTTGTGGTGTTTGGTGGGGGTATAAGAAGAAGATGAAAAGAGACAATTCGAGGTTGACCTACCAGTTTTGATAGTCATATGAGCAATCGACATCATTTTTCTTTTATTTGACAGGATTAATTCAAAGTAATTAGTTCTCATTCTCAAAAAAATCAAAGTAATTTGTTGTAAATAAGAGAGCCACTCCTTATTTTTTCTTTCAACAGTTAGCTCATGTTAGTGTAGATGAATATTTCCTCTAATTGGATTTAGGATAAATGTGCTAAAACTATAACAGCCTTGATTTCTTTGAGGGTGGAATCATAACTTCTATATATTTTTCTATGAATCACTATTGTCAAAGTAAATATCTGATGTTGCTTCAGACAGTTTTTCTAAAGGTATATATGGGTAAACTGTGATATATGTCTCCATACCTTACGTTTGACATCGTAAATGCAGGTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCTGTGAGTTGCTTAACTTCTCTTGTGGGGTTCCTTCTGCATTTGAACAATTTTTGCTTCTTACTGATTTCCTTTCCCACTTCTTCTTTTCTAGTTTGCTTCTTTTTTCCTTTTCTTGTCTTGGTTTGTTTGGGGGTGGGGGAGGTTTGGATTATCTGTATTGTTTTTCACGCGACTTGTAAACAAGAGAGCCGCAACATAGCAAAATTTTTGTGCCAGTAAGACTTTGCTATTTTGGTAGCTTGTGCCATGCTTAAACCTTCTTAGGCCAGAGTTGCTATCAGCGGTAAGTGTGTGTAAACATTTTCAGACATTATTTGTGTGCTAATAAAAATCAGTGTGGACCATGAGGCTGCCCAATAGCTTAGTGATTGTCACTTTAGATCTTAGGGCTAGCACAAGATAAGTTCCTGGTTTGGAATTTGAAGCAGTCCTGAGGGATGTACAGCTATCTATTCCTCTGAAAGAGCTGCTCAGATTTCCCTCTGGTTTAGATTTGCAGGTTGCTCTGGCCATCAGTTATGAATATGTGCTATGTTTATATATCAAGTTAGTCTGGTCATCATTTGCTTCTGCTTCAACTGCTTTTATGACCTTAAATCTTTGGCTTTGAGATACAAATGTGGAGGTTAAATGTGAAAGTTATAGTAAATTCAAGCGAACCTGGTATTTCAAGTATATGCGTTCACTTATTCTCCAAAACATAAGTATAAGCTTTAACTCAAAAGGTGGTTAAACAACTACTTTTTGATAAAGAAGGTAGCAGAGAAATTATTTAAGTGAAGATTAAAGGGTTGGCTCATCACCTATTAAGAGTTTCAAAATGTGTGTTTGTTGCCCTTAATATTTGTCGGTTAGGTAAAAAAGCATCTTCTACGTCCAAAAAAGTAAAATCATGAAGTCTGGTAAAGCCTCATTTGTCTTCACTAAGCTGAGGATGTTCGGATTAAGTACACATCTAAATATTAAGATTTAGATATCTGAATCTGAATGCACATGAATATTTAAGATGTATTAAAAACTATATACTAAATGTTTAGGACGGTTTGATTTTCAAAAATTGAACATATTAATGTTTTTATTTATAAATTAATAAATATGAAGTTAAAAAACAAAATACTATATTTATCTCCTATTGTATCTTTAAAAAATTATATGGTGTTGGAGGTGGTGATTTCTCGTGGTGGTGGTTGTGAGTAGTAGCTAGTTGTGATGGTCGGTAGTTAGTAGTGGCGGCTAATAGTTTTGTAGTGGATAATAGTAATAGTTATTGGTGGTGATGAATGATAATGGTGGTTTGACTATACATAGCGGTGATTGTCAGTAGTGATTAATATTTGTTGTGGTAATGGTTGTTGGTGCTGGCAATTGTAAATGTGCTGTCAATAACCAACCCAAACCTAATTGGTTTGGATTTAATTTTGCCACCCCTATTCAAACCCATTTAATTTTTCTTTCTTATTAAATAACATATAAAATCAAAGAAAAAAAATTAAAAATATTTTAACAAAATTTCTCAAAAATCATTTTGTTTTACATATCAACTCAATTTTTAATGGGTTGAAATGGTTTGGGTTGAGCAAACAAATGGGCGGTCAATAACCAACCCAAACTTAAATGGGTTGGGTTTAATTTTTCCACCCTATTCAAACCCATTTAGTGCTTGTAACATGAAAAAAAAATGTACTTAATGATTGACATTTGAATGATTCAGATCTAAAAACCAAACGGACTTAATGACTGACAAATGAATGGTTAAGATTAAGACTATTATTAAATGCAAACAGATGAGGCCTAAGGAAACCTAATTGTTGTCAGTTACTACGTGTGATGTGTTTCTTTGTGATATGCTGACTTCTCTTACTATCTGGGGCTTCCAGTCACTCGGAGCGCAAAGCGGTAAAAACTGACACGGTCCCGCTTCAAGCTTTAAGTGAAGTGCTTGCTTCATTGAAGTGAAATCAAAAGAAAAAAGACCAAAATAAATAGAGACAAAATATATAAGAAAAAATTCATATTAAAACCAAATAAAGGCCCCCTTTATTTCCTTGTCACAAAACAGACATACTATTCTTATCCTATTGGTATCACCAACTTTTTTCCCATATTTTCATCCCGGGCTAGCCATTTTACATCACGGATAAGATTTGAGAAAAATAATCAACACCTATATTTTTATCATTATAAAAGAAAAAATTCAACATTTTAGTCATTGTTAAGAAACAAAACAATTCAGCAATATATATTTGATCACTGTGAGGGAAAAAATTTCGGCAACATATAATTTAAATAATCAAAGCTATACATGACAAAGGAAAGCAGAGTAACGAAAAGAGTAGCAAAAAAGAAGAAAGTCCTAGCTAGCAGTGCCACTGCACCAAAATGAAGAAGAAAGAAGAGAAAACGAAGAAAGAAAAGAGAAAAAGTACTGGAAGGAAAAAGTACACAGAAACTTTACTATTCTAATTTCTTAAGGATTAGGTAAGTCATACCTCTTTTTATTATTTAAAGGTGACCACTTCCTAATTTTTTAAAAAAAACCGCTGCTTTTCTCGCTTCACCGCTTCTGGTCGCATCGCGCTTCAAGCCCAGAAGCAGCCGCTTCTTTCACATGCCTCGCTTCAGCTGGCTGAAGTGCTGAACTCTCGCTTCGCTTCACTGCTTAAAGCGATGAAGCACTTGCTTTCCTGAACACTGCCCCCATGGGTGATATATGAAATGAGATGTCCATTATACCTATACCTTTCTTTTGGTTCATAAGTTCTCTTTTTTCCTTCTCTGGTATTTTAATGTACATGTATGTCCTTCCTGATTGTGGGGCAGAGAGATAGAAAGCCTTGCACTTTTATCCATCAAAATTTGACCTCGAATATAAGCTGTACCATATTTATAGTTTTTCTTGTCAAGTTAATGTGATTAGATAATATCAATGGAGGGAGTTACAGTTACTGATAGTCGAATCTAATGGCAGATTTCAGTGTTAGTAAGTTAATCAGCAGTGAAACATGTACCTTTCATATATGAGAAGGTAATGGAACGTGTTATTTGGTTCACTTGATAACATTACTTTTTATCTTTGCTCCATTCTAGTAATTGGAGATTCGCAATCAGATATTCTCTACCCCCTGCATTCTCAAGCTACATTTCTACTTGCCTCCTTTATTTATAAATATTCTTATTTATGTAGTCCATGATAAGTCATGTTTTTGAGCTTATGTCCTCTGCATAACATGATATGAATATTCTGTGCATAGCATATATATCCATGTGCTCCCACCCCATCTCTCAGTTGGTCCAATTACAAGCAGTTTAATGAAGCGTTGACATGTTATACTCCCTCCATCCCGTTTTAGGTTATGGTGTTTACTGAGCATGGAGTTTAAAAAAGAAAGAAAGAGTTTGAAAATTTTGGTCTATAGTAGGCCCACTTAGTCTACCCTTGAGCTGAGGGTCTTTCGGAAACAACCTTTCTACCTACACAAGGTAGTGGTAAGGTCTGCATTCACTCTACCTTCCCCCGATCCCACTTAGTGGGATTCCATTGGATATGTTGTTGTTGTGATCTATAACAGACCATAGACACTTGTATGACAATAAATAATATCATTAAGGTTAGAAATGCAAGTTTAAAGGAAAAGTTGTCAATTCTTTTTTGGATAGACGAACAAGGAAAATGTGTTGTATAAAAATTGGACAAAGGAAATACTGTCTATATGCCCCTGAAGCTGCTGGAATTTGAGCTTTTTTTTTTTTTTTTAATGATAAGTAGCTTGATCTCTATGTCTCTTAAGGTTACAATTACCTCCCTACAAACTGCAGGTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATAT</genome_strand>
        <mrna_strand>TTCTCTCTATCTGTTTTTTCTATGTCCTCCTGTAACCAGTCTCGAGCTCTGGGAATGATTCGCTCTCATGTTCTTTCCGTTCTTAGAAGTACTTCTTCTCAG.................................................................................GTCCAGGCTGCAATACGAAGCAGTGGTGGTAGCAAAACATCTTTTGCCGAGGGTATAGAGTCATCTATAATATATGTACGCTTCAAGGCTGCAGCAAATGAG........................................................................................................................................................................CTTAAGCCTATCTTGGAGGAAATTGAAAGTAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGTGAACAGCGCCTTTCCTTG..............................................................................................................ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCCAGGAAAGAAGCACTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCAGCTAGAGCATCAACTTTTCAATCACTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E265414" ref_strand="+" ref_description="SGN-E265414 [cLEI-9-I14]">
      <seq>aagaagcagcggtggtaacaagacatattttgccgggggtatacagccatctatagtggatgtactattcatggctgctgccaatgaactgacacctatcctgtaggaaatagaaagctgaacacctagaaaagagtagtattcaactctcttgaagaacgccacaaactctattgctaacagcgcctttccttgataagaggtatagtgcatacagcggatctctgaattgtctaggaaagaggcattgccctctttcactagatctggatgtgcatatttaatgcaggtgtgtcagctggagcatcaactcttcaatcacttctttccatcatgttcagaggacatttcgagtttgactcctcatgtagagcctctgtgtactatcgtctatgatacatcgcgtcctaaacttattcacgaaacacacctggatgttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="36182" stop="30512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35882" g_stop="35795" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35794" i_stop="35627" i_length="168">
            <donor d_prob="0.997" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35626" g_stop="35522" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="195" r_length="107" r_score="0.886"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35521" i_stop="35412" i_length="110">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35411" g_stop="35319" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="289" r_length="94" r_score="0.925"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35318" i_stop="34782" i_length="537">
            <donor d_prob="0.931" d_score="0.92"/>
            <acceptor a_prob="0.906" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34781" g_stop="34693" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="378" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34692" i_stop="30877" i_length="3816">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.836" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30876" g_stop="30812" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="443" r_length="65" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E265414" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35882" e_stop="35795"/>
          <exon e_start="35626" e_stop="35522"/>
          <exon e_start="35411" e_stop="35319"/>
          <exon e_start="34781" e_stop="34693"/>
          <exon e_start="30876" e_stop="30812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAGGTAATATTGGAACATCTCCTTGCCTTTTAGTTAGTAGAATAGAAACTCTATTAATTCGTTGTATGGCAGTGAGTATTTCTAATCTCAAAAAAAAAAAAAAAAAGAGAAAGAAACTAGGACTAGCTTTTACGTGTAATCCATGAACCAAATGAACCTAGTTACCTGCAGCTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTA-TATTCAACT-TCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTGGTAAGTAGTAAGCTGCTCCTTTCAGTTCTATATATATAATTAAATATATGGTTTTTTTCTTCTCCTTCTTTCATCGTTAATCAATACTCGTTCTGTTTCATTTAATTCAGATAAGAGGTATAGTGCA-ACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAGGTACATTCAATGACATCAGTAATATTTACAACATTTTGTACTAGAGCATGGTATGATTGTTATATCTTGCCTTACAAAAATTGGATGACTGTTCTTTTTGTGGTGTTTGGTGGGGGTATAAGAAGAAGATGAAAAGAGACAATTCGAGGTTGACCTACCAGTTTTGATAGTCATATGAGCAATCGACATCATTTTTCTTTTATTTGACAGGATTAATTCAAAGTAATTAGTTCTCATTCTCAAAAAAATCAAAGTAATTTGTTGTAAATAAGAGAGCCACTCCTTATTTTTTCTTTCAACAGTTAGCTCATGTTAGTGTAGATGAATATTTCCTCTAATTGGATTTAGGATAAATGTGCTAAAACTATAACAGCCTTGATTTCTTTGAGGGTGGAATCATAACTTCTATATATTTTTCTATGAATCACTATTGTCAAAGTAAATATCTGATGTTGCTTCAGACAGTTTTTCTAAAGGTATATATGGGTAAACTGTGATATATGTCTCCATACCTTACGTTTGACATCGTAAATGCAGGTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCTGTGAGTTGCTTAACTTCTCTTGTGGGGTTCCTTCTGCATTTGAACAATTTTTGCTTCTTACTGATTTCCTTTCCCACTTCTTCTTTTCTAGTTTGCTTCTTTTTTCCTTTTCTTGTCTTGGTTTGTTTGGGGGTGGGGGAGGTTTGGATTATCTGTATTGTTTTTCACGCGACTTGTAAACAAGAGAGCCGCAACATAGCAAAATTTTTGTGCCAGTAAGACTTTGCTATTTTGGTAGCTTGTGCCATGCTTAAACCTTCTTAGGCCAGAGTTGCTATCAGCGGTAAGTGTGTGTAAACATTTTCAGACATTATTTGTGTGCTAATAAAAATCAGTGTGGACCATGAGGCTGCCCAATAGCTTAGTGATTGTCACTTTAGATCTTAGGGCTAGCACAAGATAAGTTCCTGGTTTGGAATTTGAAGCAGTCCTGAGGGATGTACAGCTATCTATTCCTCTGAAAGAGCTGCTCAGATTTCCCTCTGGTTTAGATTTGCAGGTTGCTCTGGCCATCAGTTATGAATATGTGCTATGTTTATATATCAAGTTAGTCTGGTCATCATTTGCTTCTGCTTCAACTGCTTTTATGACCTTAAATCTTTGGCTTTGAGATACAAATGTGGAGGTTAAATGTGAAAGTTATAGTAAATTCAAGCGAACCTGGTATTTCAAGTATATGCGTTCACTTATTCTCCAAAACATAAGTATAAGCTTTAACTCAAAAGGTGGTTAAACAACTACTTTTTGATAAAGAAGGTAGCAGAGAAATTATTTAAGTGAAGATTAAAGGGTTGGCTCATCACCTATTAAGAGTTTCAAAATGTGTGTTTGTTGCCCTTAATATTTGTCGGTTAGGTAAAAAAGCATCTTCTACGTCCAAAAAAGTAAAATCATGAAGTCTGGTAAAGCCTCATTTGTCTTCACTAAGCTGAGGATGTTCGGATTAAGTACACATCTAAATATTAAGATTTAGATATCTGAATCTGAATGCACATGAATATTTAAGATGTATTAAAAACTATATACTAAATGTTTAGGACGGTTTGATTTTCAAAAATTGAACATATTAATGTTTTTATTTATAAATTAATAAATATGAAGTTAAAAAACAAAATACTATATTTATCTCCTATTGTATCTTTAAAAAATTATATGGTGTTGGAGGTGGTGATTTCTCGTGGTGGTGGTTGTGAGTAGTAGCTAGTTGTGATGGTCGGTAGTTAGTAGTGGCGGCTAATAGTTTTGTAGTGGATAATAGTAATAGTTATTGGTGGTGATGAATGATAATGGTGGTTTGACTATACATAGCGGTGATTGTCAGTAGTGATTAATATTTGTTGTGGTAATGGTTGTTGGTGCTGGCAATTGTAAATGTGCTGTCAATAACCAACCCAAACCTAATTGGTTTGGATTTAATTTTGCCACCCCTATTCAAACCCATTTAATTTTTCTTTCTTATTAAATAACATATAAAATCAAAGAAAAAAAATTAAAAATATTTTAACAAAATTTCTCAAAAATCATTTTGTTTTACATATCAACTCAATTTTTAATGGGTTGAAATGGTTTGGGTTGAGCAAACAAATGGGCGGTCAATAACCAACCCAAACTTAAATGGGTTGGGTTTAATTTTTCCACCCTATTCAAACCCATTTAGTGCTTGTAACATGAAAAAAAAATGTACTTAATGATTGACATTTGAATGATTCAGATCTAAAAACCAAACGGACTTAATGACTGACAAATGAATGGTTAAGATTAAGACTATTATTAAATGCAAACAGATGAGGCCTAAGGAAACCTAATTGTTGTCAGTTACTACGTGTGATGTGTTTCTTTGTGATATGCTGACTTCTCTTACTATCTGGGGCTTCCAGTCACTCGGAGCGCAAAGCGGTAAAAACTGACACGGTCCCGCTTCAAGCTTTAAGTGAAGTGCTTGCTTCATTGAAGTGAAATCAAAAGAAAAAAGACCAAAATAAATAGAGACAAAATATATAAGAAAAAATTCATATTAAAACCAAATAAAGGCCCCCTTTATTTCCTTGTCACAAAACAGACATACTATTCTTATCCTATTGGTATCACCAACTTTTTTCCCATATTTTCATCCCGGGCTAGCCATTTTACATCACGGATAAGATTTGAGAAAAATAATCAACACCTATATTTTTATCATTATAAAAGAAAAAATTCAACATTTTAGTCATTGTTAAGAAACAAAACAATTCAGCAATATATATTTGATCACTGTGAGGGAAAAAATTTCGGCAACATATAATTTAAATAATCAAAGCTATACATGACAAAGGAAAGCAGAGTAACGAAAAGAGTAGCAAAAAAGAAGAAAGTCCTAGCTAGCAGTGCCACTGCACCAAAATGAAGAAGAAAGAAGAGAAAACGAAGAAAGAAAAGAGAAAAAGTACTGGAAGGAAAAAGTACACAGAAACTTTACTATTCTAATTTCTTAAGGATTAGGTAAGTCATACCTCTTTTTATTATTTAAAGGTGACCACTTCCTAATTTTTTAAAAAAAACCGCTGCTTTTCTCGCTTCACCGCTTCTGGTCGCATCGCGCTTCAAGCCCAGAAGCAGCCGCTTCTTTCACATGCCTCGCTTCAGCTGGCTGAAGTGCTGAACTCTCGCTTCGCTTCACTGCTTAAAGCGATGAAGCACTTGCTTTCCTGAACACTGCCCCCATGGGTGATATATGAAATGAGATGTCCATTATACCTATACCTTTCTTTTGGTTCATAAGTTCTCTTTTTTCCTTCTCTGGTATTTTAATGTACATGTATGTCCTTCCTGATTGTGGGGCAGAGAGATAGAAAGCCTTGCACTTTTATCCATCAAAATTTGACCTCGAATATAAGCTGTACCATATTTATAGTTTTTCTTGTCAAGTTAATGTGATTAGATAATATCAATGGAGGGAGTTACAGTTACTGATAGTCGAATCTAATGGCAGATTTCAGTGTTAGTAAGTTAATCAGCAGTGAAACATGTACCTTTCATATATGAGAAGGTAATGGAACGTGTTATTTGGTTCACTTGATAACATTACTTTTTATCTTTGCTCCATTCTAGTAATTGGAGATTCGCAATCAGATATTCTCTACCCCCTGCATTCTCAAGCTACATTTCTACTTGCCTCCTTTATTTATAAATATTCTTATTTATGTAGTCCATGATAAGTCATGTTTTTGAGCTTATGTCCTCTGCATAACATGATATGAATATTCTGTGCATAGCATATATATCCATGTGCTCCCACCCCATCTCTCAGTTGGTCCAATTACAAGCAGTTTAATGAAGCGTTGACATGTTATACTCCCTCCATCCCGTTTTAGGTTATGGTGTTTACTGAGCATGGAGTTTAAAAAAGAAAGAAAGAGTTTGAAAATTTTGGTCTATAGTAGGCCCACTTAGTCTACCCTTGAGCTGAGGGTCTTTCGGAAACAACCTTTCTACCTACACAAGGTAGTGGTAAGGTCTGCATTCACTCTACCTTCCCCCGATCCCACTTAGTGGGATTCCATTGGATATGTTGTTGTTGTGATCTATAACAGACCATAGACACTTGTATGACAATAAATAATATCATTAAGGTTAGAAATGCAAGTTTAAAGGAAAAGTTGTCAATTCTTTTTTGGATAGACGAACAAGGAAAATGTGTTGTATAAAAATTGGACAAAGGAAATACTGTCTATATGCCCCTGAAGCTGCTGGAATTTGAGCTTTTTTTTTTTTTTTTAATGATAAGTAGCTTGATCTCTATGTCTCTTAAGGTTACAATTACCTCCCTACAAACTGCAGGTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTT</genome_strand>
        <mrna_strand>AAGAAGCAGCGGTGGTAACAAGACATATTTTGCCGGGGGTATACAGCCATCTATAGTGGATGTACTATTCATGGCTGCTGCCAATGAA........................................................................................................................................................................CTGACACCTATCCTGTAGGAAATAGAAAGCTGAACACCTAGAAAAGAGTAGTATTCAACTCTCTTGAAGAACGCCACAAACTCTATTGCTAACAGCGCCTTTCCTTG..............................................................................................................ATAAGAGGTATAGTGCATACAGCGGATCTCTGAATTGTCTAGGAAAGAGGCATTGCCCTCTTTCACTAGATCTGGATGTGCATATTTAATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATGTTCAGAGGACATTTCGAGTTTGACTCCTCATGTAGAGCCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTATCGTCTATGATACATCGCGTCCTAAACTTATTCACGAAACACACCTGGATGTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E687822" ref_strand="+" ref_description="SGN-E687822 [T3_tus_81_D08]">
      <seq>cgttgcaatgttgtaccatccatgcttttctttggttatttgtgaagtttactatgtggacatgtctagagtcacaggtttcttctagggatatgacttcttttatcaagattaagttctattgagttaagcttgtaaatctatgcataagagcacaaataacctttgtgtttctcctctgcatcactgaagatatgtagagagtagtaacccacaatatgcagagtgcagcatttatttggtcaagtttcgacaacttcagtctcgagctctgggaatgattcgcactcacgttctttccgttcttagaagcacttcttctcaggttcaggctgcaataagaagcagcggtggtaacaagacatcttttgccgagggtatagagccatctataatatatgtacgattcaaggctgcagcaaatgagcttaagcctatcctggaggaaattgaaagcagaacacctagaaaagagtatattcaacttcttgaagaatgccacaaactctattgcgaacagcgcctttccttgataagaggtatagtgcaacagcggatctctgaattttctaggaaagaagcattgtcgtctttaactagatctggatgtgcatatttaatgcaggtgtgtcagctggagcatcaactcttcaatcacttctttccatcatcttcagaggacatttcgagtttgactcctcttgtagatcctctgtgtactttcctctatgatacatccgcgtctaaacttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="36764" stop="30537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36467" g_stop="36206" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36205" i_stop="36041" i_length="165">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36040" g_stop="35978" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="325" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35977" i_stop="35897" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35896" g_stop="35795" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="427" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35794" i_stop="35627" i_length="168">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35626" g_stop="35522" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="532" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35521" i_stop="35412" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35411" g_stop="35319" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="625" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35318" i_stop="34782" i_length="537">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34781" g_stop="34693" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="714" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34692" i_stop="30877" i_length="3816">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30876" g_stop="30837" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="754" r_length="40" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E687822" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36467" e_stop="36206"/>
          <exon e_start="36040" e_stop="35978"/>
          <exon e_start="35896" e_stop="35795"/>
          <exon e_start="35626" e_stop="35522"/>
          <exon e_start="35411" e_stop="35319"/>
          <exon e_start="34781" e_stop="34693"/>
          <exon e_start="30876" e_stop="30837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCAATGTTGTACCATCCATGCTTTTCTTTGGTTATTTGTGAAGTTTACTATGTGGACATGTCTAGAGTCACAGGTTTCTTCTAGGGATATGACTTCTTTTATCAAGATTAAGTTCTATTGAGTTAAGCTTGTAAATCTATGCATAAGAGCACAAATAACCTTTGTGTTTCTCCTCTGCATCACTGAAGATATGTAGAGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAGGTACTTAAAAGAATTGACATCAACATTATGTAATTTACTATCATATATAAAATTGCATTTCTTTATACAAGGCATGATTTTATGGCATTCTTGGACATATGAATTCTAATCCCATTGCCCATTCTCCTTCTCTCTGTCTGTGTTACCTTGGCCCCCTTGTAACAGTCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTTAGAAGCACTTCTTCTCAGGTAAATCTGTCTTATGCACTACAATCTTTTCTTGCAGATGAATGGTTGCATATTCTGAGATAAATACACCCATTTTATCAGGTTCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAGGTAATATTGGAACATCTCCTTGCCTTTTAGTTAGTAGAATAGAAACTCTATTAATTCGTTGTATGGCAGTGAGTATTTCTAATCTCAAAAAAAAAAAAAAAAAGAGAAAGAAACTAGGACTAGCTTTTACGTGTAATCCATGAACCAAATGAACCTAGTTACCTGCAGCTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTGGTAAGTAGTAAGCTGCTCCTTTCAGTTCTATATATATAATTAAATATATGGTTTTTTTCTTCTCCTTCTTTCATCGTTAATCAATACTCGTTCTGTTTCATTTAATTCAGATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAGGTACATTCAATGACATCAGTAATATTTACAACATTTTGTACTAGAGCATGGTATGATTGTTATATCTTGCCTTACAAAAATTGGATGACTGTTCTTTTTGTGGTGTTTGGTGGGGGTATAAGAAGAAGATGAAAAGAGACAATTCGAGGTTGACCTACCAGTTTTGATAGTCATATGAGCAATCGACATCATTTTTCTTTTATTTGACAGGATTAATTCAAAGTAATTAGTTCTCATTCTCAAAAAAATCAAAGTAATTTGTTGTAAATAAGAGAGCCACTCCTTATTTTTTCTTTCAACAGTTAGCTCATGTTAGTGTAGATGAATATTTCCTCTAATTGGATTTAGGATAAATGTGCTAAAACTATAACAGCCTTGATTTCTTTGAGGGTGGAATCATAACTTCTATATATTTTTCTATGAATCACTATTGTCAAAGTAAATATCTGATGTTGCTTCAGACAGTTTTTCTAAAGGTATATATGGGTAAACTGTGATATATGTCTCCATACCTTACGTTTGACATCGTAAATGCAGGTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCTGTGAGTTGCTTAACTTCTCTTGTGGGGTTCCTTCTGCATTTGAACAATTTTTGCTTCTTACTGATTTCCTTTCCCACTTCTTCTTTTCTAGTTTGCTTCTTTTTTCCTTTTCTTGTCTTGGTTTGTTTGGGGGTGGGGGAGGTTTGGATTATCTGTATTGTTTTTCACGCGACTTGTAAACAAGAGAGCCGCAACATAGCAAAATTTTTGTGCCAGTAAGACTTTGCTATTTTGGTAGCTTGTGCCATGCTTAAACCTTCTTAGGCCAGAGTTGCTATCAGCGGTAAGTGTGTGTAAACATTTTCAGACATTATTTGTGTGCTAATAAAAATCAGTGTGGACCATGAGGCTGCCCAATAGCTTAGTGATTGTCACTTTAGATCTTAGGGCTAGCACAAGATAAGTTCCTGGTTTGGAATTTGAAGCAGTCCTGAGGGATGTACAGCTATCTATTCCTCTGAAAGAGCTGCTCAGATTTCCCTCTGGTTTAGATTTGCAGGTTGCTCTGGCCATCAGTTATGAATATGTGCTATGTTTATATATCAAGTTAGTCTGGTCATCATTTGCTTCTGCTTCAACTGCTTTTATGACCTTAAATCTTTGGCTTTGAGATACAAATGTGGAGGTTAAATGTGAAAGTTATAGTAAATTCAAGCGAACCTGGTATTTCAAGTATATGCGTTCACTTATTCTCCAAAACATAAGTATAAGCTTTAACTCAAAAGGTGGTTAAACAACTACTTTTTGATAAAGAAGGTAGCAGAGAAATTATTTAAGTGAAGATTAAAGGGTTGGCTCATCACCTATTAAGAGTTTCAAAATGTGTGTTTGTTGCCCTTAATATTTGTCGGTTAGGTAAAAAAGCATCTTCTACGTCCAAAAAAGTAAAATCATGAAGTCTGGTAAAGCCTCATTTGTCTTCACTAAGCTGAGGATGTTCGGATTAAGTACACATCTAAATATTAAGATTTAGATATCTGAATCTGAATGCACATGAATATTTAAGATGTATTAAAAACTATATACTAAATGTTTAGGACGGTTTGATTTTCAAAAATTGAACATATTAATGTTTTTATTTATAAATTAATAAATATGAAGTTAAAAAACAAAATACTATATTTATCTCCTATTGTATCTTTAAAAAATTATATGGTGTTGGAGGTGGTGATTTCTCGTGGTGGTGGTTGTGAGTAGTAGCTAGTTGTGATGGTCGGTAGTTAGTAGTGGCGGCTAATAGTTTTGTAGTGGATAATAGTAATAGTTATTGGTGGTGATGAATGATAATGGTGGTTTGACTATACATAGCGGTGATTGTCAGTAGTGATTAATATTTGTTGTGGTAATGGTTGTTGGTGCTGGCAATTGTAAATGTGCTGTCAATAACCAACCCAAACCTAATTGGTTTGGATTTAATTTTGCCACCCCTATTCAAACCCATTTAATTTTTCTTTCTTATTAAATAACATATAAAATCAAAGAAAAAAAATTAAAAATATTTTAACAAAATTTCTCAAAAATCATTTTGTTTTACATATCAACTCAATTTTTAATGGGTTGAAATGGTTTGGGTTGAGCAAACAAATGGGCGGTCAATAACCAACCCAAACTTAAATGGGTTGGGTTTAATTTTTCCACCCTATTCAAACCCATTTAGTGCTTGTAACATGAAAAAAAAATGTACTTAATGATTGACATTTGAATGATTCAGATCTAAAAACCAAACGGACTTAATGACTGACAAATGAATGGTTAAGATTAAGACTATTATTAAATGCAAACAGATGAGGCCTAAGGAAACCTAATTGTTGTCAGTTACTACGTGTGATGTGTTTCTTTGTGATATGCTGACTTCTCTTACTATCTGGGGCTTCCAGTCACTCGGAGCGCAAAGCGGTAAAAACTGACACGGTCCCGCTTCAAGCTTTAAGTGAAGTGCTTGCTTCATTGAAGTGAAATCAAAAGAAAAAAGACCAAAATAAATAGAGACAAAATATATAAGAAAAAATTCATATTAAAACCAAATAAAGGCCCCCTTTATTTCCTTGTCACAAAACAGACATACTATTCTTATCCTATTGGTATCACCAACTTTTTTCCCATATTTTCATCCCGGGCTAGCCATTTTACATCACGGATAAGATTTGAGAAAAATAATCAACACCTATATTTTTATCATTATAAAAGAAAAAATTCAACATTTTAGTCATTGTTAAGAAACAAAACAATTCAGCAATATATATTTGATCACTGTGAGGGAAAAAATTTCGGCAACATATAATTTAAATAATCAAAGCTATACATGACAAAGGAAAGCAGAGTAACGAAAAGAGTAGCAAAAAAGAAGAAAGTCCTAGCTAGCAGTGCCACTGCACCAAAATGAAGAAGAAAGAAGAGAAAACGAAGAAAGAAAAGAGAAAAAGTACTGGAAGGAAAAAGTACACAGAAACTTTACTATTCTAATTTCTTAAGGATTAGGTAAGTCATACCTCTTTTTATTATTTAAAGGTGACCACTTCCTAATTTTTTAAAAAAAACCGCTGCTTTTCTCGCTTCACCGCTTCTGGTCGCATCGCGCTTCAAGCCCAGAAGCAGCCGCTTCTTTCACATGCCTCGCTTCAGCTGGCTGAAGTGCTGAACTCTCGCTTCGCTTCACTGCTTAAAGCGATGAAGCACTTGCTTTCCTGAACACTGCCCCCATGGGTGATATATGAAATGAGATGTCCATTATACCTATACCTTTCTTTTGGTTCATAAGTTCTCTTTTTTCCTTCTCTGGTATTTTAATGTACATGTATGTCCTTCCTGATTGTGGGGCAGAGAGATAGAAAGCCTTGCACTTTTATCCATCAAAATTTGACCTCGAATATAAGCTGTACCATATTTATAGTTTTTCTTGTCAAGTTAATGTGATTAGATAATATCAATGGAGGGAGTTACAGTTACTGATAGTCGAATCTAATGGCAGATTTCAGTGTTAGTAAGTTAATCAGCAGTGAAACATGTACCTTTCATATATGAGAAGGTAATGGAACGTGTTATTTGGTTCACTTGATAACATTACTTTTTATCTTTGCTCCATTCTAGTAATTGGAGATTCGCAATCAGATATTCTCTACCCCCTGCATTCTCAAGCTACATTTCTACTTGCCTCCTTTATTTATAAATATTCTTATTTATGTAGTCCATGATAAGTCATGTTTTTGAGCTTATGTCCTCTGCATAACATGATATGAATATTCTGTGCATAGCATATATATCCATGTGCTCCCACCCCATCTCTCAGTTGGTCCAATTACAAGCAGTTTAATGAAGCGTTGACATGTTATACTCCCTCCATCCCGTTTTAGGTTATGGTGTTTACTGAGCATGGAGTTTAAAAAAGAAAGAAAGAGTTTGAAAATTTTGGTCTATAGTAGGCCCACTTAGTCTACCCTTGAGCTGAGGGTCTTTCGGAAACAACCTTTCTACCTACACAAGGTAGTGGTAAGGTCTGCATTCACTCTACCTTCCCCCGATCCCACTTAGTGGGATTCCATTGGATATGTTGTTGTTGTGATCTATAACAGACCATAGACACTTGTATGACAATAAATAATATCATTAAGGTTAGAAATGCAAGTTTAAAGGAAAAGTTGTCAATTCTTTTTTGGATAGACGAACAAGGAAAATGTGTTGTATAAAAATTGGACAAAGGAAATACTGTCTATATGCCCCTGAAGCTGCTGGAATTTGAGCTTTTTTTTTTTTTTTTAATGATAAGTAGCTTGATCTCTATGTCTCTTAAGGTTACAATTACCTCCCTACAAACTGCAGGTGTACTTTCCTCTATGATACAT-CGCGTCCTAAACTTATT</genome_strand>
        <mrna_strand>CGTTGCAATGTTGTACCATCCATGCTTTTCTTTGGTTATTTGTGAAGTTTACTATGTGGACATGTCTAGAGTCACAGGTTTCTTCTAGGGATATGACTTCTTTTATCAAGATTAAGTTCTATTGAGTTAAGCTTGTAAATCTATGCATAAGAGCACAAATAACCTTTGTGTTTCTCCTCTGCATCACTGAAGATATGTAGAGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG.....................................................................................................................................................................TCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTTAGAAGCACTTCTTCTCAG.................................................................................GTTCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAG........................................................................................................................................................................CTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTG..............................................................................................................ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTTCCTCTATGATACATCCGCGT-CTAAACTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E327185" ref_strand="+" ref_description="SGN-E327185 [cTOC-18-J10]">
      <seq>tgcaatgttgtaccatccatgcttttctttggttatttgtgaagtttactatgtggacatgtctagagtcacaggtttcttctagggatatgacttcttttatcaagattaagttctattgagttaagcttgtaaatctatgcataagagcacaaataacctttgtgtttctcctctgcatcactgaagatatgtagagagtagtaacccacaatatgcagagtgcagcatttatttggtcaagtttcgacaacttcagtctcgagctctgggaatgattcgcactcacgttctttccgttcttagaagcacttcttctcaggttcaggctgcaataagaagcagcggtggtaacaagacatcttttgccgagggtatagagccatctataatatatgtacgattcaaggctgcagcaaatgagcttaagcctatcctggaggaaattgaaagcagaacacctagaaaagagtatattcaacttcttgaagaatgccacaaactctattgcgaacagcgcctttccttgataagaggtatagtgcaacagcggatctctgaattttctaggaaagaagcattgtcgtctttaactagatctggatgtgcatatttaatgcaggtgtgtcagctggagcatnncactcttcatcacttctttccatcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="36764" stop="34433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36464" g_stop="36206" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36205" i_stop="36041" i_length="165">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36040" g_stop="35978" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="322" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35977" i_stop="35897" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35896" g_stop="35795" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="424" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35794" i_stop="35627" i_length="168">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35626" g_stop="35522" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="529" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35521" i_stop="35412" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35411" g_stop="35319" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="622" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35318" i_stop="34782" i_length="537">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34781" g_stop="34733" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="671" r_length="49" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E327185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36464" e_stop="36206"/>
          <exon e_start="36040" e_stop="35978"/>
          <exon e_start="35896" e_stop="35795"/>
          <exon e_start="35626" e_stop="35522"/>
          <exon e_start="35411" e_stop="35319"/>
          <exon e_start="34781" e_stop="34733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATGTTGTACCATCCATGCTTTTCTTTGGTTATTTGTGAAGTTTACTATGTGGACATGTCTAGAGTCACAGGTTTCTTCTAGGGATATGACTTCTTTTATCAAGATTAAGTTCTATTGAGTTAAGCTTGTAAATCTATGCATAAGAGCACAAATAACCTTTGTGTTTCTCCTCTGCATCACTGAAGATATGTAGAGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAGGTACTTAAAAGAATTGACATCAACATTATGTAATTTACTATCATATATAAAATTGCATTTCTTTATACAAGGCATGATTTTATGGCATTCTTGGACATATGAATTCTAATCCCATTGCCCATTCTCCTTCTCTCTGTCTGTGTTACCTTGGCCCCCTTGTAACAGTCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTTAGAAGCACTTCTTCTCAGGTAAATCTGTCTTATGCACTACAATCTTTTCTTGCAGATGAATGGTTGCATATTCTGAGATAAATACACCCATTTTATCAGGTTCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAGGTAATATTGGAACATCTCCTTGCCTTTTAGTTAGTAGAATAGAAACTCTATTAATTCGTTGTATGGCAGTGAGTATTTCTAATCTCAAAAAAAAAAAAAAAAAGAGAAAGAAACTAGGACTAGCTTTTACGTGTAATCCATGAACCAAATGAACCTAGTTACCTGCAGCTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTGGTAAGTAGTAAGCTGCTCCTTTCAGTTCTATATATATAATTAAATATATGGTTTTTTTCTTCTCCTTCTTTCATCGTTAATCAATACTCGTTCTGTTTCATTTAATTCAGATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAGGTACATTCAATGACATCAGTAATATTTACAACATTTTGTACTAGAGCATGGTATGATTGTTATATCTTGCCTTACAAAAATTGGATGACTGTTCTTTTTGTGGTGTTTGGTGGGGGTATAAGAAGAAGATGAAAAGAGACAATTCGAGGTTGACCTACCAGTTTTGATAGTCATATGAGCAATCGACATCATTTTTCTTTTATTTGACAGGATTAATTCAAAGTAATTAGTTCTCATTCTCAAAAAAATCAAAGTAATTTGTTGTAAATAAGAGAGCCACTCCTTATTTTTTCTTTCAACAGTTAGCTCATGTTAGTGTAGATGAATATTTCCTCTAATTGGATTTAGGATAAATGTGCTAAAACTATAACAGCCTTGATTTCTTTGAGGGTGGAATCATAACTTCTATATATTTTTCTATGAATCACTATTGTCAAAGTAAATATCTGATGTTGCTTCAGACAGTTTTTCTAAAGGTATATATGGGTAAACTGTGATATATGTCTCCATACCTTACGTTTGACATCGTAAATGCAGGTGTGTCAGCTGGAGCATCA-ACTCTTCAATCACTTCTTTCCATCATCTT</genome_strand>
        <mrna_strand>TGCAATGTTGTACCATCCATGCTTTTCTTTGGTTATTTGTGAAGTTTACTATGTGGACATGTCTAGAGTCACAGGTTTCTTCTAGGGATATGACTTCTTTTATCAAGATTAAGTTCTATTGAGTTAAGCTTGTAAATCTATGCATAAGAGCACAAATAACCTTTGTGTTTCTCCTCTGCATCACTGAAGATATGTAGAGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG.....................................................................................................................................................................TCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTTAGAAGCACTTCTTCTCAG.................................................................................GTTCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAG........................................................................................................................................................................CTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTG..............................................................................................................ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCAGCTGGAGCATNNCACTCTTC-ATCACTTCTTTCCATCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E454663" ref_strand="+" ref_description="SGN-E454663 [cSTS-24-C7]">
      <seq>cgacggcgacggcgacggcgacaaggcctggtgttccaaagtcggcagctatttccaaaggctataatttcgcttctacttgggaacagaatgctccgttaacagagcaacagcaagcagccatactagcactttcccatgcagttgctgaaaggcctttcccgtccaatttggatcaagtttctggacacaataacagtctctctgtgtcaacaaagctcagttctatggaggattcaggggccattgaagcagtccttgtgaatacaaatcagttttacaagtggtttgcggatcttgaagcagccatgaaatcagagactgaagaaaaatatcagcattatgtcaacaccttaacagagcagattcagacctgcgatagtatacttcaccaggtggatgaaacacttgacttattcaatgagctgcagttgcagcaccaagcagtggcaacaaagactagaacccttcatgatgcgtgtgatagactgcttttggagaagcagaaattaattgagtttgcagaatcacttcacaataagctcaattactttgatgaattggagaatgttgcgaccactttttattctcctagcatgagcgttggtagtacaaattttcttccattgcttaaaagacttgatgagtgcatatcatatgttgagagtaatccacaatatgcagagtgcagcatttatttggtcaagtttcgacaacttcagtctcgagctctgggaatgattcgctctcatgttctttctgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="45915" stop="35696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45621" g_stop="45533" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.809"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45532" i_stop="40403" i_length="5130">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40402" g_stop="40319" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="173" r_length="84" r_score="0.905"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40318" i_stop="40235" i_length="84">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40234" g_stop="40133" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="275" r_length="102" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40132" i_stop="38527" i_length="1606">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38526" g_stop="38482" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="320" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38481" i_stop="38365" i_length="117">
            <donor d_prob="0.959" d_score="0.93"/>
            <acceptor a_prob="0.847" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38364" g_stop="38290" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="395" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38289" i_stop="38172" i_length="118">
            <donor d_prob="0.914" d_score="0.96"/>
            <acceptor a_prob="0.917" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38171" g_stop="38076" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="491" r_length="96" r_score="0.927"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38075" i_stop="37548" i_length="528">
            <donor d_prob="0.832" d_score="0.94"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37547" g_stop="37470" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="569" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37469" i_stop="36607" i_length="863">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36606" g_stop="36515" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="661" r_length="92" r_score="0.946"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="36514" i_stop="36268" i_length="247">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="36267" g_stop="36206" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="722" r_length="61" r_score="0.952"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="36205" i_stop="36041" i_length="165">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="36040" g_stop="35996" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="767" r_length="45" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E454663" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45621" e_stop="45533"/>
          <exon e_start="40402" e_stop="40319"/>
          <exon e_start="40234" e_stop="40133"/>
          <exon e_start="38526" e_stop="38482"/>
          <exon e_start="38364" e_stop="38290"/>
          <exon e_start="38171" e_stop="38076"/>
          <exon e_start="37547" e_stop="37470"/>
          <exon e_start="36606" e_stop="36515"/>
          <exon e_start="36267" e_stop="36206"/>
          <exon e_start="36040" e_stop="35996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAGGTTCACTCTCTATTTTCTACATTGTTCAGATTTTCTCCAGATTTACTAGATTTGTTTGAACGCATAACCAAAATTATGTAGATATCTGATTCTATGACAAATTTTGATGACCGGATTTTTATCATATGCACTGATCCTGTTGAAATAATGAATAGTAAAGCGGTGATTGGAAAAGGGGATCAAATTACATTGGATTATTGCTTGATTTCTTGGATTCCTTACAGCTTAAGAAAATCCAGCAAATCTTTTAACTATATCTTAGTAATATCTTGGTACTAAGTTTCTCTAATAAATTTTATCACTTACCCAAAAAAGGTGAAAAAAAGGAGGATCAGAATTGTTTCTTTGTGCGATAAAGTTCTCAGTTGATTTTAACATGTGTTTGTCGTCTCATTTCAACGGCAAGGTTTAGCTGCTGGTGATTGTGTCGCATATTCTCCGTTGAACTATCTTTTGAAGTTTTATTTTCATTGTAATGTGACACTGCTTCTCTTTTTCCTCGTATAACCACCGGCTAACTAGCTGCTGAAACTTTTACTTTTAGCTTATTCTTGCAATAGCTATTGGAAAATCACCTTTGAGAGAAATAATGGAGAAAATATTATTGAATTGCTCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGGAAATCTTTTCTAACTAGAATTCCTATTCTAAGTAAGAAATACTTATTTCTATTCTAACACTCCCCCTCAAGCTGGTGCATACAAATTATATGCACCTAGCTTGTTACAGATGTAATTAATACGAGGACATGTGAGAGACTTAGTGAACATATCCGCAAGCTGATCATTTGACTTCACAAATTTTGTAACAATATCTCCTGAGAGTATCTTTTCTCTGAGAAAGTGACAGTCAATCTCAATGTGCTTAGTCCTTTCATGAAACACTGGATTTGATGCGATATGAAGAGCCGCTTGATTATCACACAAAAGTTCCATCTGATCAATTTTGCCGAATTTTAGTTCTCCCAGTAATTATTTGTGCCAAACTAACTCACAAGTTGCTGTCGCTATTGCTCGATATTCTGATTCTGCACTAGATTGAGAAGCCACATTTTGTTTCTTACTCTTCCACGACACCAAATTACCTCCAACTAAAACACAATATCCGGATGTCAAACGTCTGTTAGAGGGTAATCCTGCCCAATCAGTGTCTGTATATCCAATAATATGCTCATGACCTTGATCCTCAAAGAGTAGTCCTTTGCCGGGGGCTGACTTTATATATCGAAGAATATGAACAACTGCTTCCCAATGACTATCACAAGGGGAAGTCATAAACTGACTTACAACACTCACGGGAAAAGAGATGCCTGGTCTAGTCACTATGAGATAATTCAACTTTCCAACAAGTCGTCTATACCTTTAAGGATTACTAAGTGGCTCCACCTGTCTCGGAAGAAGTTTAACATTCGGATCCATCGGAGTGTCAATAGGTGTACATCCCATCATTCCTGTCTCCTCAAGAATGTCTAAGGCATACTTGTGTTTAGAGATAACAATGCCTGATCTAGATTGAGCAACCTCAATACCTAGAAAATACTTCAATCTACCAAGGTCTTTTGTCTGAAAGTGCTTAAAAAGATGTTGCTTTATATCGGTGATATAGTCTTGATCATTATCAGTGGTAACAATATCATCAACATAAACAACCAAATAGATACATCGACCTGGTGCAGAATGTCGATAAAACACAAAGTGATTTGATCCATTACGAGTCATGCCAAACTTCTGAATTACTGTGCTAAACTTCCCAAACCAAGCTCGAGGAGACTGTTTCAGACCATAGAGTGACCTACGCAATCGACATACAAGGCTACTAGACTCCCCCTGAGCAACAAAACTAGGTGGTTGCTCCATATAGACTTCTTCCTCAAGATCACTAGCAGAAAAGCATTCTTTATGTCCAACTGATAAAGAGGACAATGACGAACAACAACCATAGATTAGAAAAAGACGAACATATGCTATTTTAGCCACAGGAGCAAAAGTGTCACTATAATCTAGCCCAAATATCTGAGTATACCCTTTGGCGACAAGGAGAACCTTAAGTCGATCAACCTAACCATCTAGACCAATTTTGACTGCATAAACCCAATGACAACCAACAGTAGATTTACATGCAGGAAGGGAGACAAGCTCCCAAGTATCACTCTTATGTAAAGCAGACATCTCATCAACCATAGCCTGCCTCCATCTAGAATGAGAAAGTGCTTCACCTATAGTCTTAGGAATGGAAATAGAGGACAATGACGACACAAAGGCATAATGGGTGATGATATATGATGATAACTTAAGAAGGTAAATGCGGGTTAGTATTTCGAGTAGATTGTATACCTTTTTGAAGTGCAAGCGGTGGGCTAGGTAGAGGCAAGTCCGCAGTAGGAGCAGGGTCTGGCGCATGACATGAATCATCTGGGACTAGGGTTGGATGTGGACGACGATGATAAGTTAGTAGTGGTGGCACTGCAACTGGAGATGTAGACGTAACTGTAGATCCCTCAAAGGTTGGCACAGGTAAAATTTGAGGTATGGGTAAGACCATAGAGACATCACTACGATCAGAAGATGTATAATAAGGCTGAGACTCAAAAAATGTAACATCAACAGACATAAGGTATCGGTGAAGAACATGTGAATAACAACGATATCCTTTTTGAACTCTAGAGTAACCAAGAAAGACACATTTGAGGCACGAGGAGCTAATTTATCTTTTCCTGGGGCTAAATTATGAAGAAAGCATGTACTCCAAACGACACGAGAGGGGATAGGATAAAGATGTGACTGAGGAAACAATATGGAATATGGAACATGATTTTGAATATAAGAAGAGGGCATTCTGTTAATTTAATAATAAGCAGAAAGGACTGCATCGCCCCAAAAATGCATCGAAACATGGCAATTCTATGAGGAGAGTGCGAGCAGTCTCTATGAGATATGCCTATTCTTTCTTTCTGCGACACCATTTTGTTGAGGAGTGTATGGACAAGATGTTTGGTGAATGATTCCGTGGTGAGACATAAATTCCTGAAATTGGGGTGATAAGTATACTAAGGCATTATCACTACGGAATGTACGAATAGAAACACCAAACTGATTTTGTATTTCAGCAAAGAAAACTTTGAAAATAGAAAATAACTCAGAACGATCTTTCATTAAGAAAACCCAAGTGCATCTCGAATAATCATCAATGAAACTAACAAAATAACGAAATCCTAAGGGGGAACTGACTCTACTAGTACCCCAAATATTAGAATGAACTAATGAAAAAATAGACTCTGAACGACCCTCAGTACTACGAGAAAATGTAGCACGAGTGTGTTTCCCAAATTGACACGACTCACAATCTAATGTGGATAAACCAGACAAACTAGGTACCATCTTTTTCAATTTGGATAGACTTGAGTGTCCCAAACGTTTGTGAATTAGATCTGAGGAATCTGTAACGGAGCATGCTATTAAAGAATTAGAAGAGGTAAGATAGTAAAGGCCTTGTGATTCATATCTTGTTCCAATAGTCTGTCCTGTACTGCGGTCCTGCATGACAAAGAAATGATCAAAAAAATTATGCTACAATGTAGGGCTTTCGTCAAACGACTAACCGATGCTAGATTAAAAGGAGAACCAGGGACATAAAGAACAGAGTCAAGAGTGACAGAAGATATGGGTTTGGCTTTTCCAACCCCTTTTGGTTTTGTTTGTATCCCATTGGCTAATGTAATAGATGAAAGAGATTATGAATAGATTATATCAGATAAAAGTGATTTATTACCAGTGATATGATCAGAAGCCCCCGATTCTATGACCCATGATCCAATAGTGTTAGACTGTGATATACTAGTACAAAATATTACCCGCAACAGAAACATTAGGTTTTGCAATCGAAACTACTTGTAGAGACGTTTGTTTATTTGCACAATACGGAAAAAACTCTATATATTCCTTTAGAACAACAGGATCATAACTGGGTGATCCACCATGCAAAATAAAACATATGTCACGAGTGTGTCCAGGTTTATGACATGACTACACTTAGATCGAGATTTTTCAAAAAATTCTCTCCCCCGTCTATTCTCCATGGATTTGTATGTACGCTTGGAACTGCCAGAAGCTGCTACACAAGTCTGAAAATATTGGAAGCTGCCGAAATCTGCCCGCAGTGGCCTGAAAAATTCTGATATTGCCGGAATTTTGCTGGGAACTGCCCAAAAAAAATCACCGGAACCCTAATTTCGGTGATCGGATCTAGAGATAACTGTATGGTTCTTACCGAAAACACTGGACGACCCTAACAGAAGAGAGAAACTCGAAAAAAAGAAGAGAGACCCGAGCAGCACTCACGCGCCGGAAGCTGCCCAAAAATCACCGCAACCCTAATTTCGGTGATCGAATCTAAATAAAAATGGTCAAAAACAGTATAGTCTGGGTCGGAATGGCTGGACGACCCCACCTGTCGAAAAAAATCTCAAAGACTATGGACGGAAAAGTCCTCACGCGCCGGCGAGTGAGCCAGATCTCGCCGGAATCTGCCACCTTCGATCGGCGCGTGAGGGCGCGTGCGGTGCTGTTTTCTGGTGGTTCTTGCTGGGGTTTGGTCGCGGGAGGTTTCCTAGCCTCGTGTTGGTGTTGGTTTTCGCACAACACCCACTAAATAAAAAATGATAAAATCAGTCCCAAACGTCACCGGAAATTGAATTGTTTGTTTCTCACCAATGCCCTGATACCATGAGAGAAATAATGGAGAAAATATTATTGAATTGCGCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGAAAACCTTTTCCAACTAGAATTCCTATTGTAATTCCTATTCTAAGTAAGAAATATTTATTCCTATTCTAACAACCTCTATCCTGGATTTGATCTTCTATTTTGTGTTTGTGGCCCTCATCATGTCAAATTATATTGTTTGTAGTAAAAGAGAAGAATTGTTTGTACGTACTACATGTGTCTATTTCATGTCTATTGAAAGTTATTCCTTTTGATTAATTAAATCAACATTAGTGGCTATCTTAATGTTTATATTCTACAACGACTTGAGCTAGTATTTTTCTTACAGAATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTGGTGAGTTTTTCCTTCTTGGTTGGTTTCAGAATATATCTATCTCTAACTCAATTACCTGAAATATGTTTTTATTTCAATTTCCAGGACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAGGTGAGTTACTTTTGAAAGACTGGAGTGGAGTTTCCTTCCAGTTGAGGAGTAGTCTCCATTCTCTTATTTTCTTTGGTGCACACAGGGGGTACCTGGTGTATAGATAATTAGTTGGAGTTCGTAGACAATCATATCTTGTTGTAGATGCTTTGCCTTTTGGTATACGCCTTGTATATGGCCAGTTTGCGAATATGAATGAAAAAATATTTACCTGATTAAAAAAAACCCAATTTTTAGTTGGCATGTCCTTTATCTTTTACATTTCCCGGTTGCAGATCTTAGTATTCCATATTTCAAATAAGGGATCGTGAATGATATTCCCTTATAAAAAAGGTTGCATGATCAACTAAATTTTGGGCAAGGAATCAAAACAAATAAAATCTTGCAACCAATGCTAAATGATAGACTTATATTTCTACAAGACTAGAAGTTGTAGTGTGTTATACTCAAAGGCTCATCTGCCACACATAACTGCTAAACCAGTGAAATCTTCTTTTTGATAAGATAACTGCTAAAATCGATGAGTTGAGCAGAAGGCCTGATAATTGCTTGTTACAAAGCCCCATCCATTGTTTTGGCTTACTAGATAATATGCGTCTCATTTGTTCCGGATGATTGTCATTAACTAGAGAGGGTAAACCTTATGCCGGGCAAAGGATGACTAGAACTTACATTTAGTGAGAAATGACCCTGATACTCAATGTCTTCTGGGGTAGAAATACCTAAATTGCATGTGATGGGTCAAGGGATGATGACCATAGTGGCTGTTTATGGCCTTGATCCTGCCTATTTTAGTGGAGCAGGTTTTGTGTCTATATATCAGAAAGACATGCAAAAGAAATTTCTTCTAGAACTCTCCTCCATATTTGAACTTTGGTAGCCCTAGAAGTTATTTTCTTTTTCTCCTTTTGTTTTATCCTAATGTCTTTTGATAAGGAGATTTTCGGATCATTATGTTATTATATACCTCATCACTAAAAAAGAGTTCTCTGTGAAAGACAACCAACAATTTATACACACAATAAACTTGTAAGTGCACAAAAAATTAACAATAGGAGGTTATTTCTCAACTGTACGAAATCATAATCCACCCCTTTCAAAAGACCTCCTACTTCTCTCCTTCTAAAGAACCACTGGAGCTAACGGAGCTACATCCCATTTCACTTCTTCTCCTCTTTATTGTAAAGCCCCCCACTCCCCCAGCATTTGCATGATTCTTAAATTTCAAAAATGTTAAAAGTAAGTGGTCACAACTGCCAGGCTATTAGGCAGTGTAGTTGGAGTTAATTAACATCCTCAACCCTCATTTCACACATGTAACACTTTTTGCATATATCAGGCAGCTTTCTTGAAGGAATTGCTCTATAAGTACTGCTTCATATGTTGCTGTCCAGCAAAAGCAAGCCACTTAATAAGGAGCTTCAGTTTTCCAAATTTGTTTCCATGTCAATCTTTGTGTTGCCGCCTTGTATATGCTTGAATACTGCATATGCTTAATTGTCTATGTAAATGATGATATTAATGGCATCTTAATTGACCTTTCCCCTTATGCTGCTTGAACTTGATATGAGTTTCCTCTTCCCCTTTGTTTATTTTGTTGATACAGTTTTATAAGTGGTTCGCGGATCTTGAAGCAGCCATGAAATTAGAGGTTGGTCTTTAGCTTGTTTATATGTCTTCCGTTTCTTCCAAAAGTTGTGAGTCATACGTTTCATCTTTTTCACTTGCGGACTAAAAGATATTACATATGCTTTCTTTCTATATATAGTCTGAAGAAAAATATCAGCATTATGCCAGCACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAGGTATTCTGAGAAGAAAAATAATGCTCTTATACTCTTCTCTTAAGCCTTTTGTTGTTGCTGTTCATCTAACTATGCTCGAGTCGACATGCCCTTGCCCTTAAAATTGGCTCTCTTGCAGGTGGATGAAACACTTGACTTGTTCAATGAGTTGCAATTGCAGCATCAAGCAGTGGCAACAAAGACAAGAACTCTTCATGATGCGTGCGATAGACTGGTGTGTCAACCCATTTCTCTTAGCATCTGTGGTTACTTAGCTGTAGATTGTACTTTTCTCTTTCATTCTGTTCAAAATTCTGAGGAGCAGAGGAGCAATTAATTGTATGATAAGAAGATAGGCTTGTAACTATGTAGTTCAATTTCTTAATCAACATTGTTTTGCTTACTCTATGATGTTGAAAGTCTTCATTGGCAATCTACTATATTGATGGATTAAAATCTATGATATCTTTTATAGTTGCCAAACATCTTCAATTGCCACCTAGTACCTTGTAAATGCATTTCTTCATTTTGCATTTCTAGTTTTTTCTTTTATCTGAAGTTGCTGTTTGTCTTAAAGCATTATCTAGTTACCATTCATGTCAATGTTGTGTATTCTAATGTCCAGTGAGTGGCATTTGAAATTCGGAGTTCCCTATCAGTGTCTAATATTAATGGACATGTGATGTACAGGTAAAGAGGCAATAATTAACTACAAGAAGCAGCATTGAATAATATTCTTGTGTAACTTCTTTTTTGTTTGAAGCTTTTGGAGAAGCAGAAAATAATTGAGTTTGCAGAATCACTTCACAATAAGCTCAATTACTTTGATGAATTGGAGAATGTAAGGTCCGGCTGCCATTTCTGTTGATAATATTCCATTGTTATTCAATGCCTTTTGCACTATTTCCACAGTAGTCTATCTATGCCTATCTGAATTAGGTATGGTTCTGCATCAACTTTATTTTGAGTGAAGAGAATTGATGCTATCTGTATTTTTTATGCTTTGATACTCGGTGAGGAAATATACCTAACTGAGAGTTTGAACTATGGAAAACAGCTTTAAGAGATTAGAGCTTTCTGCCTCAAGAGATTTCATGTTTTTTAATTAAATTTTTTCCACACCCATACATCGGAGGGCAGAGCTTTATCCTTTGTAAATAAAGCTTTGGTTCTAGATTGTTTTCTTCCTCATGTTACAAATGAGTCACCCAAAGCTATTCTGTCTTGGCTTTTCCAATCTAGTTCTTTTGGATTATTTTGATGTTCTTGCTTAGCGAGTTATTTATTTAAGATGATTTTTTTAATCTCGTCTTTTGGTCAACTCTTCTTTCTCCTATTTATGTGCTTGGTGGTTTCTAAAGGAAAACTTTTTCACTTGTGAGATTGAGAATGAGAGTTCCTGTTTTAATTTTTTTTTTTTGGAACTGAGAGTTCCTTTTTTTAAATTCCTTAAAGAGGAATAGCTTTTCACTCTCTACTGTACATATTCTTGATTTAATCATGACCATTAGACTAAAATTTTCTAATTCCTTTTTGTTTAATTACATCTAATTGGTGTATCAACTTGATTTGTCTTGTGCTAAATTTTCTCTTCAAGTCCTGCTCTTCTCCTACTTGAACTTCTCCAAATGTCAAAGTACCCAGTTTTATGTTTTTTTTTTTTTGATTTGATTCCTCATGCTTGTCTTGCACTCTTGTTTGCAGGTTGCTACCACTTTTTATTCTCCTAGCATGAGCGTTGGTAGTACAAATTTTCTTCCATTGCTAAAGAGACTTGATGAGTGCATATCCTAAGTGACATTACATTTCATATTACTGCATTGAAATCTATGAATATTAGAACCACTGCAATGTTGTACCATCCATGCTTTTCTTTGGTTATTTGTGAAGTTTACTATGTGGACATGTCTAGAGTCACAGGTTTCTTCTAGGGATATGACTTCTTTTATCAAGATTAAGTTCTATTGAGTTAAGCTTGTAAATCTATGCATAAGAGCACAAATAACCTTTGTGTTTCTCCTCTGCATCACTGAAGATATGTAGAGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAGGTACTTAAAAGAATTGACATCAACATTATGTAATTTACTATCATATATAAAATTGCATTTCTTTATACAAGGCATGATTTTATGGCATTCTTGGACATATGAATTCTAATCCCATTGCCCATTCTCCTTCTCTCTGTCTGTGTTACCTTGGCCCCCTTGTAACAGTCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTT</genome_strand>
        <mrna_strand>CGACGGCGACGGCGACGGCGACAAGGCCTGGTGTTCCAAAGTCGGCAGCTATTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTCCGTTAACAGAGCAACAGCAAGCAGCCATACTAGCACTTTCCCATGCAGTTGCTGAAAGGCCTTTCCCGTCCAATTTG....................................................................................GATCAAGTTTCTGGACACAATAACAGTCTCTCTGTGTCAACAAAGCTCAGTTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACAAGTGGTTTGCGGATCTTGAAGCAGCCATGAAATCAGAG.....................................................................................................................ACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG......................................................................................................................GTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAGCAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGAGAAGCAGAAATTAATTGAGTTTGCAGAATCACTTCACAATAAGCTCAATTACTTTGATGAATTGGAGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGACCACTTTTTATTCTCCTAGCATGAGCGTTGGTAGTACAAATTTTCTTCCATTGCTTAAAAGACTTGATGAGTGCATATCATATGT.......................................................................................................................................................................................................................................................TGAG-AGTAATCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG.....................................................................................................................................................................TCTCGAGCTCTGGGAATGATTCGCTCTCATGTTCTTTCTGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E454964" ref_strand="+" ref_description="SGN-E454964 [cSTS-24-L20]">
      <seq>cgacggcgacggcgacggcgacaaggcctggtgttccaaagtcggcagctatttccaaaggctataatttcgcttctacttgggaacagaatgctccgttaacagagcaacagcaagcagccatactagcactttcccatgcagatgctgaaaggcctttcccgtccaatttggatcaagtttctggacacaataacagtctctctgtgtcaacaaagctcagttctatggaggattcaggggccattgaagcagtccttgtgaatacaaatcagttttacaagtggtttgcggatcttgaagcagccatgaaatcagagactgaagaaaaatatcagcattatgtcaacaccttaacagagcagattcagacctgcgatagtatacttcaccaggtggatgaaacacttgacttattcaatgagctgcagttgcagcaccaagcagtggcaacaaagactagaacccttcatgatgcgtgtgatagactgcttttggagaagcagaaattaattgagtttgcagaatcacttcacaataagctcaattactttgatgaattggagaatgttgcgaccactttntattctcctagcatgagcgttggtagtacaaattttcttccattgcttaaaagacttgatgagtgcatatcatatgttgagagtaatccacaatatgcagagtgcagcatttatttggtcaagtttcgacaacttcagtctcgagctctgggaatgattcgctctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="45915" stop="35712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45621" g_stop="45533" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.809"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45532" i_stop="40403" i_length="5130">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40402" g_stop="40319" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="173" r_length="84" r_score="0.893"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40318" i_stop="40235" i_length="84">
            <donor d_prob="0.992" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40234" g_stop="40133" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="275" r_length="102" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40132" i_stop="38527" i_length="1606">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38526" g_stop="38482" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="320" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38481" i_stop="38365" i_length="117">
            <donor d_prob="0.959" d_score="0.93"/>
            <acceptor a_prob="0.847" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38364" g_stop="38290" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="395" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38289" i_stop="38172" i_length="118">
            <donor d_prob="0.914" d_score="0.96"/>
            <acceptor a_prob="0.917" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38171" g_stop="38076" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="491" r_length="96" r_score="0.927"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38075" i_stop="37548" i_length="528">
            <donor d_prob="0.832" d_score="0.94"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37547" g_stop="37470" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="569" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37469" i_stop="36607" i_length="863">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36606" g_stop="36515" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="661" r_length="92" r_score="0.935"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="36514" i_stop="36268" i_length="247">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="36267" g_stop="36206" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="722" r_length="61" r_score="0.952"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="36205" i_stop="36041" i_length="165">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="36040" g_stop="36011" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="752" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E454964" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45621" e_stop="45533"/>
          <exon e_start="40402" e_stop="40319"/>
          <exon e_start="40234" e_stop="40133"/>
          <exon e_start="38526" e_stop="38482"/>
          <exon e_start="38364" e_stop="38290"/>
          <exon e_start="38171" e_stop="38076"/>
          <exon e_start="37547" e_stop="37470"/>
          <exon e_start="36606" e_stop="36515"/>
          <exon e_start="36267" e_stop="36206"/>
          <exon e_start="36040" e_stop="36011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAGGTTCACTCTCTATTTTCTACATTGTTCAGATTTTCTCCAGATTTACTAGATTTGTTTGAACGCATAACCAAAATTATGTAGATATCTGATTCTATGACAAATTTTGATGACCGGATTTTTATCATATGCACTGATCCTGTTGAAATAATGAATAGTAAAGCGGTGATTGGAAAAGGGGATCAAATTACATTGGATTATTGCTTGATTTCTTGGATTCCTTACAGCTTAAGAAAATCCAGCAAATCTTTTAACTATATCTTAGTAATATCTTGGTACTAAGTTTCTCTAATAAATTTTATCACTTACCCAAAAAAGGTGAAAAAAAGGAGGATCAGAATTGTTTCTTTGTGCGATAAAGTTCTCAGTTGATTTTAACATGTGTTTGTCGTCTCATTTCAACGGCAAGGTTTAGCTGCTGGTGATTGTGTCGCATATTCTCCGTTGAACTATCTTTTGAAGTTTTATTTTCATTGTAATGTGACACTGCTTCTCTTTTTCCTCGTATAACCACCGGCTAACTAGCTGCTGAAACTTTTACTTTTAGCTTATTCTTGCAATAGCTATTGGAAAATCACCTTTGAGAGAAATAATGGAGAAAATATTATTGAATTGCTCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGGAAATCTTTTCTAACTAGAATTCCTATTCTAAGTAAGAAATACTTATTTCTATTCTAACACTCCCCCTCAAGCTGGTGCATACAAATTATATGCACCTAGCTTGTTACAGATGTAATTAATACGAGGACATGTGAGAGACTTAGTGAACATATCCGCAAGCTGATCATTTGACTTCACAAATTTTGTAACAATATCTCCTGAGAGTATCTTTTCTCTGAGAAAGTGACAGTCAATCTCAATGTGCTTAGTCCTTTCATGAAACACTGGATTTGATGCGATATGAAGAGCCGCTTGATTATCACACAAAAGTTCCATCTGATCAATTTTGCCGAATTTTAGTTCTCCCAGTAATTATTTGTGCCAAACTAACTCACAAGTTGCTGTCGCTATTGCTCGATATTCTGATTCTGCACTAGATTGAGAAGCCACATTTTGTTTCTTACTCTTCCACGACACCAAATTACCTCCAACTAAAACACAATATCCGGATGTCAAACGTCTGTTAGAGGGTAATCCTGCCCAATCAGTGTCTGTATATCCAATAATATGCTCATGACCTTGATCCTCAAAGAGTAGTCCTTTGCCGGGGGCTGACTTTATATATCGAAGAATATGAACAACTGCTTCCCAATGACTATCACAAGGGGAAGTCATAAACTGACTTACAACACTCACGGGAAAAGAGATGCCTGGTCTAGTCACTATGAGATAATTCAACTTTCCAACAAGTCGTCTATACCTTTAAGGATTACTAAGTGGCTCCACCTGTCTCGGAAGAAGTTTAACATTCGGATCCATCGGAGTGTCAATAGGTGTACATCCCATCATTCCTGTCTCCTCAAGAATGTCTAAGGCATACTTGTGTTTAGAGATAACAATGCCTGATCTAGATTGAGCAACCTCAATACCTAGAAAATACTTCAATCTACCAAGGTCTTTTGTCTGAAAGTGCTTAAAAAGATGTTGCTTTATATCGGTGATATAGTCTTGATCATTATCAGTGGTAACAATATCATCAACATAAACAACCAAATAGATACATCGACCTGGTGCAGAATGTCGATAAAACACAAAGTGATTTGATCCATTACGAGTCATGCCAAACTTCTGAATTACTGTGCTAAACTTCCCAAACCAAGCTCGAGGAGACTGTTTCAGACCATAGAGTGACCTACGCAATCGACATACAAGGCTACTAGACTCCCCCTGAGCAACAAAACTAGGTGGTTGCTCCATATAGACTTCTTCCTCAAGATCACTAGCAGAAAAGCATTCTTTATGTCCAACTGATAAAGAGGACAATGACGAACAACAACCATAGATTAGAAAAAGACGAACATATGCTATTTTAGCCACAGGAGCAAAAGTGTCACTATAATCTAGCCCAAATATCTGAGTATACCCTTTGGCGACAAGGAGAACCTTAAGTCGATCAACCTAACCATCTAGACCAATTTTGACTGCATAAACCCAATGACAACCAACAGTAGATTTACATGCAGGAAGGGAGACAAGCTCCCAAGTATCACTCTTATGTAAAGCAGACATCTCATCAACCATAGCCTGCCTCCATCTAGAATGAGAAAGTGCTTCACCTATAGTCTTAGGAATGGAAATAGAGGACAATGACGACACAAAGGCATAATGGGTGATGATATATGATGATAACTTAAGAAGGTAAATGCGGGTTAGTATTTCGAGTAGATTGTATACCTTTTTGAAGTGCAAGCGGTGGGCTAGGTAGAGGCAAGTCCGCAGTAGGAGCAGGGTCTGGCGCATGACATGAATCATCTGGGACTAGGGTTGGATGTGGACGACGATGATAAGTTAGTAGTGGTGGCACTGCAACTGGAGATGTAGACGTAACTGTAGATCCCTCAAAGGTTGGCACAGGTAAAATTTGAGGTATGGGTAAGACCATAGAGACATCACTACGATCAGAAGATGTATAATAAGGCTGAGACTCAAAAAATGTAACATCAACAGACATAAGGTATCGGTGAAGAACATGTGAATAACAACGATATCCTTTTTGAACTCTAGAGTAACCAAGAAAGACACATTTGAGGCACGAGGAGCTAATTTATCTTTTCCTGGGGCTAAATTATGAAGAAAGCATGTACTCCAAACGACACGAGAGGGGATAGGATAAAGATGTGACTGAGGAAACAATATGGAATATGGAACATGATTTTGAATATAAGAAGAGGGCATTCTGTTAATTTAATAATAAGCAGAAAGGACTGCATCGCCCCAAAAATGCATCGAAACATGGCAATTCTATGAGGAGAGTGCGAGCAGTCTCTATGAGATATGCCTATTCTTTCTTTCTGCGACACCATTTTGTTGAGGAGTGTATGGACAAGATGTTTGGTGAATGATTCCGTGGTGAGACATAAATTCCTGAAATTGGGGTGATAAGTATACTAAGGCATTATCACTACGGAATGTACGAATAGAAACACCAAACTGATTTTGTATTTCAGCAAAGAAAACTTTGAAAATAGAAAATAACTCAGAACGATCTTTCATTAAGAAAACCCAAGTGCATCTCGAATAATCATCAATGAAACTAACAAAATAACGAAATCCTAAGGGGGAACTGACTCTACTAGTACCCCAAATATTAGAATGAACTAATGAAAAAATAGACTCTGAACGACCCTCAGTACTACGAGAAAATGTAGCACGAGTGTGTTTCCCAAATTGACACGACTCACAATCTAATGTGGATAAACCAGACAAACTAGGTACCATCTTTTTCAATTTGGATAGACTTGAGTGTCCCAAACGTTTGTGAATTAGATCTGAGGAATCTGTAACGGAGCATGCTATTAAAGAATTAGAAGAGGTAAGATAGTAAAGGCCTTGTGATTCATATCTTGTTCCAATAGTCTGTCCTGTACTGCGGTCCTGCATGACAAAGAAATGATCAAAAAAATTATGCTACAATGTAGGGCTTTCGTCAAACGACTAACCGATGCTAGATTAAAAGGAGAACCAGGGACATAAAGAACAGAGTCAAGAGTGACAGAAGATATGGGTTTGGCTTTTCCAACCCCTTTTGGTTTTGTTTGTATCCCATTGGCTAATGTAATAGATGAAAGAGATTATGAATAGATTATATCAGATAAAAGTGATTTATTACCAGTGATATGATCAGAAGCCCCCGATTCTATGACCCATGATCCAATAGTGTTAGACTGTGATATACTAGTACAAAATATTACCCGCAACAGAAACATTAGGTTTTGCAATCGAAACTACTTGTAGAGACGTTTGTTTATTTGCACAATACGGAAAAAACTCTATATATTCCTTTAGAACAACAGGATCATAACTGGGTGATCCACCATGCAAAATAAAACATATGTCACGAGTGTGTCCAGGTTTATGACATGACTACACTTAGATCGAGATTTTTCAAAAAATTCTCTCCCCCGTCTATTCTCCATGGATTTGTATGTACGCTTGGAACTGCCAGAAGCTGCTACACAAGTCTGAAAATATTGGAAGCTGCCGAAATCTGCCCGCAGTGGCCTGAAAAATTCTGATATTGCCGGAATTTTGCTGGGAACTGCCCAAAAAAAATCACCGGAACCCTAATTTCGGTGATCGGATCTAGAGATAACTGTATGGTTCTTACCGAAAACACTGGACGACCCTAACAGAAGAGAGAAACTCGAAAAAAAGAAGAGAGACCCGAGCAGCACTCACGCGCCGGAAGCTGCCCAAAAATCACCGCAACCCTAATTTCGGTGATCGAATCTAAATAAAAATGGTCAAAAACAGTATAGTCTGGGTCGGAATGGCTGGACGACCCCACCTGTCGAAAAAAATCTCAAAGACTATGGACGGAAAAGTCCTCACGCGCCGGCGAGTGAGCCAGATCTCGCCGGAATCTGCCACCTTCGATCGGCGCGTGAGGGCGCGTGCGGTGCTGTTTTCTGGTGGTTCTTGCTGGGGTTTGGTCGCGGGAGGTTTCCTAGCCTCGTGTTGGTGTTGGTTTTCGCACAACACCCACTAAATAAAAAATGATAAAATCAGTCCCAAACGTCACCGGAAATTGAATTGTTTGTTTCTCACCAATGCCCTGATACCATGAGAGAAATAATGGAGAAAATATTATTGAATTGCGCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGAAAACCTTTTCCAACTAGAATTCCTATTGTAATTCCTATTCTAAGTAAGAAATATTTATTCCTATTCTAACAACCTCTATCCTGGATTTGATCTTCTATTTTGTGTTTGTGGCCCTCATCATGTCAAATTATATTGTTTGTAGTAAAAGAGAAGAATTGTTTGTACGTACTACATGTGTCTATTTCATGTCTATTGAAAGTTATTCCTTTTGATTAATTAAATCAACATTAGTGGCTATCTTAATGTTTATATTCTACAACGACTTGAGCTAGTATTTTTCTTACAGAATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTGGTGAGTTTTTCCTTCTTGGTTGGTTTCAGAATATATCTATCTCTAACTCAATTACCTGAAATATGTTTTTATTTCAATTTCCAGGACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAGGTGAGTTACTTTTGAAAGACTGGAGTGGAGTTTCCTTCCAGTTGAGGAGTAGTCTCCATTCTCTTATTTTCTTTGGTGCACACAGGGGGTACCTGGTGTATAGATAATTAGTTGGAGTTCGTAGACAATCATATCTTGTTGTAGATGCTTTGCCTTTTGGTATACGCCTTGTATATGGCCAGTTTGCGAATATGAATGAAAAAATATTTACCTGATTAAAAAAAACCCAATTTTTAGTTGGCATGTCCTTTATCTTTTACATTTCCCGGTTGCAGATCTTAGTATTCCATATTTCAAATAAGGGATCGTGAATGATATTCCCTTATAAAAAAGGTTGCATGATCAACTAAATTTTGGGCAAGGAATCAAAACAAATAAAATCTTGCAACCAATGCTAAATGATAGACTTATATTTCTACAAGACTAGAAGTTGTAGTGTGTTATACTCAAAGGCTCATCTGCCACACATAACTGCTAAACCAGTGAAATCTTCTTTTTGATAAGATAACTGCTAAAATCGATGAGTTGAGCAGAAGGCCTGATAATTGCTTGTTACAAAGCCCCATCCATTGTTTTGGCTTACTAGATAATATGCGTCTCATTTGTTCCGGATGATTGTCATTAACTAGAGAGGGTAAACCTTATGCCGGGCAAAGGATGACTAGAACTTACATTTAGTGAGAAATGACCCTGATACTCAATGTCTTCTGGGGTAGAAATACCTAAATTGCATGTGATGGGTCAAGGGATGATGACCATAGTGGCTGTTTATGGCCTTGATCCTGCCTATTTTAGTGGAGCAGGTTTTGTGTCTATATATCAGAAAGACATGCAAAAGAAATTTCTTCTAGAACTCTCCTCCATATTTGAACTTTGGTAGCCCTAGAAGTTATTTTCTTTTTCTCCTTTTGTTTTATCCTAATGTCTTTTGATAAGGAGATTTTCGGATCATTATGTTATTATATACCTCATCACTAAAAAAGAGTTCTCTGTGAAAGACAACCAACAATTTATACACACAATAAACTTGTAAGTGCACAAAAAATTAACAATAGGAGGTTATTTCTCAACTGTACGAAATCATAATCCACCCCTTTCAAAAGACCTCCTACTTCTCTCCTTCTAAAGAACCACTGGAGCTAACGGAGCTACATCCCATTTCACTTCTTCTCCTCTTTATTGTAAAGCCCCCCACTCCCCCAGCATTTGCATGATTCTTAAATTTCAAAAATGTTAAAAGTAAGTGGTCACAACTGCCAGGCTATTAGGCAGTGTAGTTGGAGTTAATTAACATCCTCAACCCTCATTTCACACATGTAACACTTTTTGCATATATCAGGCAGCTTTCTTGAAGGAATTGCTCTATAAGTACTGCTTCATATGTTGCTGTCCAGCAAAAGCAAGCCACTTAATAAGGAGCTTCAGTTTTCCAAATTTGTTTCCATGTCAATCTTTGTGTTGCCGCCTTGTATATGCTTGAATACTGCATATGCTTAATTGTCTATGTAAATGATGATATTAATGGCATCTTAATTGACCTTTCCCCTTATGCTGCTTGAACTTGATATGAGTTTCCTCTTCCCCTTTGTTTATTTTGTTGATACAGTTTTATAAGTGGTTCGCGGATCTTGAAGCAGCCATGAAATTAGAGGTTGGTCTTTAGCTTGTTTATATGTCTTCCGTTTCTTCCAAAAGTTGTGAGTCATACGTTTCATCTTTTTCACTTGCGGACTAAAAGATATTACATATGCTTTCTTTCTATATATAGTCTGAAGAAAAATATCAGCATTATGCCAGCACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAGGTATTCTGAGAAGAAAAATAATGCTCTTATACTCTTCTCTTAAGCCTTTTGTTGTTGCTGTTCATCTAACTATGCTCGAGTCGACATGCCCTTGCCCTTAAAATTGGCTCTCTTGCAGGTGGATGAAACACTTGACTTGTTCAATGAGTTGCAATTGCAGCATCAAGCAGTGGCAACAAAGACAAGAACTCTTCATGATGCGTGCGATAGACTGGTGTGTCAACCCATTTCTCTTAGCATCTGTGGTTACTTAGCTGTAGATTGTACTTTTCTCTTTCATTCTGTTCAAAATTCTGAGGAGCAGAGGAGCAATTAATTGTATGATAAGAAGATAGGCTTGTAACTATGTAGTTCAATTTCTTAATCAACATTGTTTTGCTTACTCTATGATGTTGAAAGTCTTCATTGGCAATCTACTATATTGATGGATTAAAATCTATGATATCTTTTATAGTTGCCAAACATCTTCAATTGCCACCTAGTACCTTGTAAATGCATTTCTTCATTTTGCATTTCTAGTTTTTTCTTTTATCTGAAGTTGCTGTTTGTCTTAAAGCATTATCTAGTTACCATTCATGTCAATGTTGTGTATTCTAATGTCCAGTGAGTGGCATTTGAAATTCGGAGTTCCCTATCAGTGTCTAATATTAATGGACATGTGATGTACAGGTAAAGAGGCAATAATTAACTACAAGAAGCAGCATTGAATAATATTCTTGTGTAACTTCTTTTTTGTTTGAAGCTTTTGGAGAAGCAGAAAATAATTGAGTTTGCAGAATCACTTCACAATAAGCTCAATTACTTTGATGAATTGGAGAATGTAAGGTCCGGCTGCCATTTCTGTTGATAATATTCCATTGTTATTCAATGCCTTTTGCACTATTTCCACAGTAGTCTATCTATGCCTATCTGAATTAGGTATGGTTCTGCATCAACTTTATTTTGAGTGAAGAGAATTGATGCTATCTGTATTTTTTATGCTTTGATACTCGGTGAGGAAATATACCTAACTGAGAGTTTGAACTATGGAAAACAGCTTTAAGAGATTAGAGCTTTCTGCCTCAAGAGATTTCATGTTTTTTAATTAAATTTTTTCCACACCCATACATCGGAGGGCAGAGCTTTATCCTTTGTAAATAAAGCTTTGGTTCTAGATTGTTTTCTTCCTCATGTTACAAATGAGTCACCCAAAGCTATTCTGTCTTGGCTTTTCCAATCTAGTTCTTTTGGATTATTTTGATGTTCTTGCTTAGCGAGTTATTTATTTAAGATGATTTTTTTAATCTCGTCTTTTGGTCAACTCTTCTTTCTCCTATTTATGTGCTTGGTGGTTTCTAAAGGAAAACTTTTTCACTTGTGAGATTGAGAATGAGAGTTCCTGTTTTAATTTTTTTTTTTTGGAACTGAGAGTTCCTTTTTTTAAATTCCTTAAAGAGGAATAGCTTTTCACTCTCTACTGTACATATTCTTGATTTAATCATGACCATTAGACTAAAATTTTCTAATTCCTTTTTGTTTAATTACATCTAATTGGTGTATCAACTTGATTTGTCTTGTGCTAAATTTTCTCTTCAAGTCCTGCTCTTCTCCTACTTGAACTTCTCCAAATGTCAAAGTACCCAGTTTTATGTTTTTTTTTTTTTGATTTGATTCCTCATGCTTGTCTTGCACTCTTGTTTGCAGGTTGCTACCACTTTTTATTCTCCTAGCATGAGCGTTGGTAGTACAAATTTTCTTCCATTGCTAAAGAGACTTGATGAGTGCATATCCTAAGTGACATTACATTTCATATTACTGCATTGAAATCTATGAATATTAGAACCACTGCAATGTTGTACCATCCATGCTTTTCTTTGGTTATTTGTGAAGTTTACTATGTGGACATGTCTAGAGTCACAGGTTTCTTCTAGGGATATGACTTCTTTTATCAAGATTAAGTTCTATTGAGTTAAGCTTGTAAATCTATGCATAAGAGCACAAATAACCTTTGTGTTTCTCCTCTGCATCACTGAAGATATGTAGAGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAGGTACTTAAAAGAATTGACATCAACATTATGTAATTTACTATCATATATAAAATTGCATTTCTTTATACAAGGCATGATTTTATGGCATTCTTGGACATATGAATTCTAATCCCATTGCCCATTCTCCTTCTCTCTGTCTGTGTTACCTTGGCCCCCTTGTAACAGTCTCGAGCTCTGGGAATGATTCGCACTCAC</genome_strand>
        <mrna_strand>CGACGGCGACGGCGACGGCGACAAGGCCTGGTGTTCCAAAGTCGGCAGCTATTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTCCGTTAACAGAGCAACAGCAAGCAGCCATACTAGCACTTTCCCATGCAGATGCTGAAAGGCCTTTCCCGTCCAATTTG....................................................................................GATCAAGTTTCTGGACACAATAACAGTCTCTCTGTGTCAACAAAGCTCAGTTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACAAGTGGTTTGCGGATCTTGAAGCAGCCATGAAATCAGAG.....................................................................................................................ACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG......................................................................................................................GTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAGCAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGAGAAGCAGAAATTAATTGAGTTTGCAGAATCACTTCACAATAAGCTCAATTACTTTGATGAATTGGAGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGACCACTTTNTATTCTCCTAGCATGAGCGTTGGTAGTACAAATTTTCTTCCATTGCTTAAAAGACTTGATGAGTGCATATCATATGT.......................................................................................................................................................................................................................................................TGAG-AGTAATCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG.....................................................................................................................................................................TCTCGAGCTCTGGGAATGATTCGCTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E330789" ref_strand="+" ref_description="SGN-E330789 [cTOD-8-P22]">
      <seq>gtaaataaagctttggttctagattgttttcttcctcatgggacaaatgagtcacccaaagctattctgtcttggcttttccaatctagttcttttggattatcttgatgttcttgcttaacgagttattcatttaaaatgatggtggtagtctcagcctttggtcaactcttctttctcctatttatgtgcttggtggtttctaaaggaaaactttttcacttgtgagattgagaatgagagttcctgttttaattttttttttttggaactgagagttcctttttttaaattccttaaagaggaatagcttttcactctctactgtacatattcttgatttaatcatgaccattagactaaaattttctaattcctttttgtttaattacatctaattggtgtatcaacttgatttgtcttgtgctaaattttctcttcaaggcctgctcttctcctacttgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="37457" stop="36389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37157" g_stop="36689" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E330789" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37157" e_stop="36689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATAAAGCTTTGGTTCTAGATTGTTTTCTTCCTCATGTTACAAATGAGTCACCCAAAGCTATTCTGTCTTGGCTTTTCCAATCTAGTTCTTTTGGATTATTTTGATGTTCTTGCTTAGCGAGTTATTTATTTAAGATGATTTTTTTAATCTCGTCTTTTGGTCAACTCTTCTTTCTCCTATTTATGTGCTTGGTGGTTTCTAAAGGAAAACTTTTTCACTTGTGAGATTGAGAATGAGAGTTCCTGTTTTAATTTTTTTTTTTTGGAACTGAGAGTTCCTTTTTTTAAATTCCTTAAAGAGGAATAGCTTTTCACTCTCTACTGTACATATTCTTGATTTAATCATGACCATTAGACTAAAATTTTCTAATTCCTTTTTGTTTAATTACATCTAATTGGTGTATCAACTTGATTTGTCTTGTGCTAAATTTTCTCTTCAAGTCCTGCTCTTCTCCTACTTGAACTT</genome_strand>
        <mrna_strand>GTAAATAAAGCTTTGGTTCTAGATTGTTTTCTTCCTCATGGGACAAATGAGTCACCCAAAGCTATTCTGTCTTGGCTTTTCCAATCTAGTTCTTTTGGATTATCTTGATGTTCTTGCTTAACGAGTTATTCATTTAAAATGATGGTGGTAGTCTCAGCCTTTGGTCAACTCTTCTTTCTCCTATTTATGTGCTTGGTGGTTTCTAAAGGAAAACTTTTTCACTTGTGAGATTGAGAATGAGAGTTCCTGTTTTAATTTTTTTTTTTTGGAACTGAGAGTTCCTTTTTTTAAATTCCTTAAAGAGGAATAGCTTTTCACTCTCTACTGTACATATTCTTGATTTAATCATGACCATTAGACTAAAATTTTCTAATTCCTTTTTGTTTAATTACATCTAATTGGTGTATCAACTTGATTTGTCTTGTGCTAAATTTTCTCTTCAAGGCCTGCTCTTCTCCTACTTGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E719677" ref_strand="+" ref_description="SGN-E719677 [FC08CC04]">
      <seq>ggcgattggcggccaaatcggccgaattggagcggaaacccaaacctaagccagaggatcatcccagatctccaacttcatcgttcaaatcaccctttttttcaacttcgaagtcgaaattgcttccattgaagctccaaaatccatatggtgatggctacaatcatctgtagtattgattgttttggtatcagtaattgactagttactacacagtccgtttccccctcatttttcatcaattctgtttcgttttactttttacacgaacagaaacagttgcaaagtagtggaagaagagagtgatgataatactatggcggcaacgacaaggccgggggttctcaagtccgaagctgtttccaaaggctataatttcgcttctacttgggaacagaatgctctgttaacagagcaacaatcagcagccatacaagcactttcccatgcagttgccgagagacctttcccgtccaatttggaccaagtttctggacatgataacagcctctctgtttcaacaaagcttagttctctagaggattcaggggccattgaagcagtcctagtgaatacaaatcagttttataagtggttcgcggatcttgaagcagccatgaaattagagtctgaagaaaaatatcagcattatgccagcaccttaacagagcagattcagacctgcgatagtatacttcaccaggtggatgaaacacttgacttgttcaatgagttgcaattgcagcatcaagcagtggcaacaaagacaagaactcttcatgatgcgtgcgatagactggtgtgtcaacccatttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="46205" stop="37757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45898" g_stop="45533" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="397" r_length="365" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45532" i_stop="40403" i_length="5130">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40402" g_stop="40319" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="481" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40318" i_stop="40235" i_length="84">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40234" g_stop="40133" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="583" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40132" i_stop="38527" i_length="1606">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38526" g_stop="38482" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="628" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38481" i_stop="38365" i_length="117">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38364" g_stop="38290" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="703" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38289" i_stop="38172" i_length="118">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38171" g_stop="38057" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="818" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E719677" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45898" e_stop="45533"/>
          <exon e_start="40402" e_stop="40319"/>
          <exon e_start="40234" e_stop="40133"/>
          <exon e_start="38526" e_stop="38482"/>
          <exon e_start="38364" e_stop="38290"/>
          <exon e_start="38171" e_stop="38057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAAACCCAAAGCTAAGCCAGAGGATCATCCCAGATCTCCAACTTCATCGTTCAAATCACCCTTTTTTTCAACTTCGAAGTCGAAATTGCTTCCATTGAAGCTCCAAAATCCATATGGTGATGGCTACAATCATCTGTAGTATTGATTGTTTTGGTATCAGTAATTGACTAGTTACTACACAGTCCGTTTCCCCCTCATTTTTCATCAATTCTGTTTCGTTTTACTTTTTACACGAACAGAAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAGGTTCACTCTCTATTTTCTACATTGTTCAGATTTTCTCCAGATTTACTAGATTTGTTTGAACGCATAACCAAAATTATGTAGATATCTGATTCTATGACAAATTTTGATGACCGGATTTTTATCATATGCACTGATCCTGTTGAAATAATGAATAGTAAAGCGGTGATTGGAAAAGGGGATCAAATTACATTGGATTATTGCTTGATTTCTTGGATTCCTTACAGCTTAAGAAAATCCAGCAAATCTTTTAACTATATCTTAGTAATATCTTGGTACTAAGTTTCTCTAATAAATTTTATCACTTACCCAAAAAAGGTGAAAAAAAGGAGGATCAGAATTGTTTCTTTGTGCGATAAAGTTCTCAGTTGATTTTAACATGTGTTTGTCGTCTCATTTCAACGGCAAGGTTTAGCTGCTGGTGATTGTGTCGCATATTCTCCGTTGAACTATCTTTTGAAGTTTTATTTTCATTGTAATGTGACACTGCTTCTCTTTTTCCTCGTATAACCACCGGCTAACTAGCTGCTGAAACTTTTACTTTTAGCTTATTCTTGCAATAGCTATTGGAAAATCACCTTTGAGAGAAATAATGGAGAAAATATTATTGAATTGCTCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGGAAATCTTTTCTAACTAGAATTCCTATTCTAAGTAAGAAATACTTATTTCTATTCTAACACTCCCCCTCAAGCTGGTGCATACAAATTATATGCACCTAGCTTGTTACAGATGTAATTAATACGAGGACATGTGAGAGACTTAGTGAACATATCCGCAAGCTGATCATTTGACTTCACAAATTTTGTAACAATATCTCCTGAGAGTATCTTTTCTCTGAGAAAGTGACAGTCAATCTCAATGTGCTTAGTCCTTTCATGAAACACTGGATTTGATGCGATATGAAGAGCCGCTTGATTATCACACAAAAGTTCCATCTGATCAATTTTGCCGAATTTTAGTTCTCCCAGTAATTATTTGTGCCAAACTAACTCACAAGTTGCTGTCGCTATTGCTCGATATTCTGATTCTGCACTAGATTGAGAAGCCACATTTTGTTTCTTACTCTTCCACGACACCAAATTACCTCCAACTAAAACACAATATCCGGATGTCAAACGTCTGTTAGAGGGTAATCCTGCCCAATCAGTGTCTGTATATCCAATAATATGCTCATGACCTTGATCCTCAAAGAGTAGTCCTTTGCCGGGGGCTGACTTTATATATCGAAGAATATGAACAACTGCTTCCCAATGACTATCACAAGGGGAAGTCATAAACTGACTTACAACACTCACGGGAAAAGAGATGCCTGGTCTAGTCACTATGAGATAATTCAACTTTCCAACAAGTCGTCTATACCTTTAAGGATTACTAAGTGGCTCCACCTGTCTCGGAAGAAGTTTAACATTCGGATCCATCGGAGTGTCAATAGGTGTACATCCCATCATTCCTGTCTCCTCAAGAATGTCTAAGGCATACTTGTGTTTAGAGATAACAATGCCTGATCTAGATTGAGCAACCTCAATACCTAGAAAATACTTCAATCTACCAAGGTCTTTTGTCTGAAAGTGCTTAAAAAGATGTTGCTTTATATCGGTGATATAGTCTTGATCATTATCAGTGGTAACAATATCATCAACATAAACAACCAAATAGATACATCGACCTGGTGCAGAATGTCGATAAAACACAAAGTGATTTGATCCATTACGAGTCATGCCAAACTTCTGAATTACTGTGCTAAACTTCCCAAACCAAGCTCGAGGAGACTGTTTCAGACCATAGAGTGACCTACGCAATCGACATACAAGGCTACTAGACTCCCCCTGAGCAACAAAACTAGGTGGTTGCTCCATATAGACTTCTTCCTCAAGATCACTAGCAGAAAAGCATTCTTTATGTCCAACTGATAAAGAGGACAATGACGAACAACAACCATAGATTAGAAAAAGACGAACATATGCTATTTTAGCCACAGGAGCAAAAGTGTCACTATAATCTAGCCCAAATATCTGAGTATACCCTTTGGCGACAAGGAGAACCTTAAGTCGATCAACCTAACCATCTAGACCAATTTTGACTGCATAAACCCAATGACAACCAACAGTAGATTTACATGCAGGAAGGGAGACAAGCTCCCAAGTATCACTCTTATGTAAAGCAGACATCTCATCAACCATAGCCTGCCTCCATCTAGAATGAGAAAGTGCTTCACCTATAGTCTTAGGAATGGAAATAGAGGACAATGACGACACAAAGGCATAATGGGTGATGATATATGATGATAACTTAAGAAGGTAAATGCGGGTTAGTATTTCGAGTAGATTGTATACCTTTTTGAAGTGCAAGCGGTGGGCTAGGTAGAGGCAAGTCCGCAGTAGGAGCAGGGTCTGGCGCATGACATGAATCATCTGGGACTAGGGTTGGATGTGGACGACGATGATAAGTTAGTAGTGGTGGCACTGCAACTGGAGATGTAGACGTAACTGTAGATCCCTCAAAGGTTGGCACAGGTAAAATTTGAGGTATGGGTAAGACCATAGAGACATCACTACGATCAGAAGATGTATAATAAGGCTGAGACTCAAAAAATGTAACATCAACAGACATAAGGTATCGGTGAAGAACATGTGAATAACAACGATATCCTTTTTGAACTCTAGAGTAACCAAGAAAGACACATTTGAGGCACGAGGAGCTAATTTATCTTTTCCTGGGGCTAAATTATGAAGAAAGCATGTACTCCAAACGACACGAGAGGGGATAGGATAAAGATGTGACTGAGGAAACAATATGGAATATGGAACATGATTTTGAATATAAGAAGAGGGCATTCTGTTAATTTAATAATAAGCAGAAAGGACTGCATCGCCCCAAAAATGCATCGAAACATGGCAATTCTATGAGGAGAGTGCGAGCAGTCTCTATGAGATATGCCTATTCTTTCTTTCTGCGACACCATTTTGTTGAGGAGTGTATGGACAAGATGTTTGGTGAATGATTCCGTGGTGAGACATAAATTCCTGAAATTGGGGTGATAAGTATACTAAGGCATTATCACTACGGAATGTACGAATAGAAACACCAAACTGATTTTGTATTTCAGCAAAGAAAACTTTGAAAATAGAAAATAACTCAGAACGATCTTTCATTAAGAAAACCCAAGTGCATCTCGAATAATCATCAATGAAACTAACAAAATAACGAAATCCTAAGGGGGAACTGACTCTACTAGTACCCCAAATATTAGAATGAACTAATGAAAAAATAGACTCTGAACGACCCTCAGTACTACGAGAAAATGTAGCACGAGTGTGTTTCCCAAATTGACACGACTCACAATCTAATGTGGATAAACCAGACAAACTAGGTACCATCTTTTTCAATTTGGATAGACTTGAGTGTCCCAAACGTTTGTGAATTAGATCTGAGGAATCTGTAACGGAGCATGCTATTAAAGAATTAGAAGAGGTAAGATAGTAAAGGCCTTGTGATTCATATCTTGTTCCAATAGTCTGTCCTGTACTGCGGTCCTGCATGACAAAGAAATGATCAAAAAAATTATGCTACAATGTAGGGCTTTCGTCAAACGACTAACCGATGCTAGATTAAAAGGAGAACCAGGGACATAAAGAACAGAGTCAAGAGTGACAGAAGATATGGGTTTGGCTTTTCCAACCCCTTTTGGTTTTGTTTGTATCCCATTGGCTAATGTAATAGATGAAAGAGATTATGAATAGATTATATCAGATAAAAGTGATTTATTACCAGTGATATGATCAGAAGCCCCCGATTCTATGACCCATGATCCAATAGTGTTAGACTGTGATATACTAGTACAAAATATTACCCGCAACAGAAACATTAGGTTTTGCAATCGAAACTACTTGTAGAGACGTTTGTTTATTTGCACAATACGGAAAAAACTCTATATATTCCTTTAGAACAACAGGATCATAACTGGGTGATCCACCATGCAAAATAAAACATATGTCACGAGTGTGTCCAGGTTTATGACATGACTACACTTAGATCGAGATTTTTCAAAAAATTCTCTCCCCCGTCTATTCTCCATGGATTTGTATGTACGCTTGGAACTGCCAGAAGCTGCTACACAAGTCTGAAAATATTGGAAGCTGCCGAAATCTGCCCGCAGTGGCCTGAAAAATTCTGATATTGCCGGAATTTTGCTGGGAACTGCCCAAAAAAAATCACCGGAACCCTAATTTCGGTGATCGGATCTAGAGATAACTGTATGGTTCTTACCGAAAACACTGGACGACCCTAACAGAAGAGAGAAACTCGAAAAAAAGAAGAGAGACCCGAGCAGCACTCACGCGCCGGAAGCTGCCCAAAAATCACCGCAACCCTAATTTCGGTGATCGAATCTAAATAAAAATGGTCAAAAACAGTATAGTCTGGGTCGGAATGGCTGGACGACCCCACCTGTCGAAAAAAATCTCAAAGACTATGGACGGAAAAGTCCTCACGCGCCGGCGAGTGAGCCAGATCTCGCCGGAATCTGCCACCTTCGATCGGCGCGTGAGGGCGCGTGCGGTGCTGTTTTCTGGTGGTTCTTGCTGGGGTTTGGTCGCGGGAGGTTTCCTAGCCTCGTGTTGGTGTTGGTTTTCGCACAACACCCACTAAATAAAAAATGATAAAATCAGTCCCAAACGTCACCGGAAATTGAATTGTTTGTTTCTCACCAATGCCCTGATACCATGAGAGAAATAATGGAGAAAATATTATTGAATTGCGCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGAAAACCTTTTCCAACTAGAATTCCTATTGTAATTCCTATTCTAAGTAAGAAATATTTATTCCTATTCTAACAACCTCTATCCTGGATTTGATCTTCTATTTTGTGTTTGTGGCCCTCATCATGTCAAATTATATTGTTTGTAGTAAAAGAGAAGAATTGTTTGTACGTACTACATGTGTCTATTTCATGTCTATTGAAAGTTATTCCTTTTGATTAATTAAATCAACATTAGTGGCTATCTTAATGTTTATATTCTACAACGACTTGAGCTAGTATTTTTCTTACAGAATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTGGTGAGTTTTTCCTTCTTGGTTGGTTTCAGAATATATCTATCTCTAACTCAATTACCTGAAATATGTTTTTATTTCAATTTCCAGGACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAGGTGAGTTACTTTTGAAAGACTGGAGTGGAGTTTCCTTCCAGTTGAGGAGTAGTCTCCATTCTCTTATTTTCTTTGGTGCACACAGGGGGTACCTGGTGTATAGATAATTAGTTGGAGTTCGTAGACAATCATATCTTGTTGTAGATGCTTTGCCTTTTGGTATACGCCTTGTATATGGCCAGTTTGCGAATATGAATGAAAAAATATTTACCTGATTAAAAAAAACCCAATTTTTAGTTGGCATGTCCTTTATCTTTTACATTTCCCGGTTGCAGATCTTAGTATTCCATATTTCAAATAAGGGATCGTGAATGATATTCCCTTATAAAAAAGGTTGCATGATCAACTAAATTTTGGGCAAGGAATCAAAACAAATAAAATCTTGCAACCAATGCTAAATGATAGACTTATATTTCTACAAGACTAGAAGTTGTAGTGTGTTATACTCAAAGGCTCATCTGCCACACATAACTGCTAAACCAGTGAAATCTTCTTTTTGATAAGATAACTGCTAAAATCGATGAGTTGAGCAGAAGGCCTGATAATTGCTTGTTACAAAGCCCCATCCATTGTTTTGGCTTACTAGATAATATGCGTCTCATTTGTTCCGGATGATTGTCATTAACTAGAGAGGGTAAACCTTATGCCGGGCAAAGGATGACTAGAACTTACATTTAGTGAGAAATGACCCTGATACTCAATGTCTTCTGGGGTAGAAATACCTAAATTGCATGTGATGGGTCAAGGGATGATGACCATAGTGGCTGTTTATGGCCTTGATCCTGCCTATTTTAGTGGAGCAGGTTTTGTGTCTATATATCAGAAAGACATGCAAAAGAAATTTCTTCTAGAACTCTCCTCCATATTTGAACTTTGGTAGCCCTAGAAGTTATTTTCTTTTTCTCCTTTTGTTTTATCCTAATGTCTTTTGATAAGGAGATTTTCGGATCATTATGTTATTATATACCTCATCACTAAAAAAGAGTTCTCTGTGAAAGACAACCAACAATTTATACACACAATAAACTTGTAAGTGCACAAAAAATTAACAATAGGAGGTTATTTCTCAACTGTACGAAATCATAATCCACCCCTTTCAAAAGACCTCCTACTTCTCTCCTTCTAAAGAACCACTGGAGCTAACGGAGCTACATCCCATTTCACTTCTTCTCCTCTTTATTGTAAAGCCCCCCACTCCCCCAGCATTTGCATGATTCTTAAATTTCAAAAATGTTAAAAGTAAGTGGTCACAACTGCCAGGCTATTAGGCAGTGTAGTTGGAGTTAATTAACATCCTCAACCCTCATTTCACACATGTAACACTTTTTGCATATATCAGGCAGCTTTCTTGAAGGAATTGCTCTATAAGTACTGCTTCATATGTTGCTGTCCAGCAAAAGCAAGCCACTTAATAAGGAGCTTCAGTTTTCCAAATTTGTTTCCATGTCAATCTTTGTGTTGCCGCCTTGTATATGCTTGAATACTGCATATGCTTAATTGTCTATGTAAATGATGATATTAATGGCATCTTAATTGACCTTTCCCCTTATGCTGCTTGAACTTGATATGAGTTTCCTCTTCCCCTTTGTTTATTTTGTTGATACAGTTTTATAAGTGGTTCGCGGATCTTGAAGCAGCCATGAAATTAGAGGTTGGTCTTTAGCTTGTTTATATGTCTTCCGTTTCTTCCAAAAGTTGTGAGTCATACGTTTCATCTTTTTCACTTGCGGACTAAAAGATATTACATATGCTTTCTTTCTATATATAGTCTGAAGAAAAATATCAGCATTATGCCAGCACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAGGTATTCTGAGAAGAAAAATAATGCTCTTATACTCTTCTCTTAAGCCTTTTGTTGTTGCTGTTCATCTAACTATGCTCGAGTCGACATGCCCTTGCCCTTAAAATTGGCTCTCTTGCAGGTGGATGAAACACTTGACTTGTTCAATGAGTTGCAATTGCAGCATCAAGCAGTGGCAACAAAGACAAGAACTCTTCATGATGCGTGCGATAGACTGGTGTGTCAACCCATTTCTC</genome_strand>
        <mrna_strand>CGG-AAACCCAAACCTAAGCCAGAGGATCATCCCAGATCTCCAACTTCATCGTTCAAATCACCCTTTTTTTCAACTTCGAAGTCGAAATTGCTTCCATTGAAGCTCCAAAATCCATATGGTGATGGCTACAATCATCTGTAGTATTGATTGTTTTGGTATCAGTAATTGACTAGTTACTACACAGTCCGTTTCCCCCTCATTTTTCATCAATTCTGTTTCGTTTTACTTTTTACACGAACAGAAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTG....................................................................................GACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGGTTCGCGGATCTTGAAGCAGCCATGAAATTAGAG.....................................................................................................................TCTGAAGAAAAATATCAGCATTATGCCAGCACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG......................................................................................................................GTGGATGAAACACTTGACTTGTTCAATGAGTTGCAATTGCAGCATCAAGCAGTGGCAACAAAGACAAGAACTCTTCATGATGCGTGCGATAGACTGGTGTGTCAACCCATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E329746" ref_strand="+" ref_description="SGN-E329746 [cTOD-3-G13]">
      <seq>tgaattttgaagaaaaggaacgtcgttactgtaattttcatatgagcggaaaacccaaagctaagccagaggatcatcccagatctccaacttcatcgttcaaatcaccctttttttcaacttcgaagtcgaaattgcttccattgaagctccaaaatccatatgaaacagttgcaaagtagtggaagaagagagtgatgataatactatggcggcaacgacaaggccgggggttctcaagtccgaagctgtttccaaaggctataatttcgcttctacttgggaacagaatgctctgttaacagagcaacaatcagcagccatacaagcactttcccatgcagttgccgagagacctttcccgtccaatttggaccaagtttctggacatgataacagcctctctgtttcaacaaagcttagttctctagaggattcaggggccattgaagcagtcctagtgaatacaaatcagttttataagtggttcgcggatcttgaagcagccatgaaattagagtctgaagaaaaatatcagcattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="46244" stop="38041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45944" g_stop="45780" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45779" i_stop="45657" i_length="123">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45656" g_stop="45533" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="289" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45532" i_stop="40403" i_length="5130">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40402" g_stop="40319" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="373" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40318" i_stop="40235" i_length="84">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40234" g_stop="40133" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="475" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40132" i_stop="38527" i_length="1606">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38526" g_stop="38482" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="520" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38481" i_stop="38365" i_length="117">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38364" g_stop="38341" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="544" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E329746" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45944" e_stop="45780"/>
          <exon e_start="45656" e_stop="45533"/>
          <exon e_start="40402" e_stop="40319"/>
          <exon e_start="40234" e_stop="40133"/>
          <exon e_start="38526" e_stop="38482"/>
          <exon e_start="38364" e_stop="38341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTTGAAGAAAAGGAACGTCGTTACTGTAATTTTCATATGAGCGGAAAACCCAAAGCTAAGCCAGAGGATCATCCCAGATCTCCAACTTCATCGTTCAAATCACCCTTTTTTTCAACTTCGAAGTCGAAATTGCTTCCATTGAAGCTCCAAAATCCATATGGTGATGGCTACAATCATCTGTAGTATTGATTGTTTTGGTATCAGTAATTGACTAGTTACTACACAGTCCGTTTCCCCCTCATTTTTCATCAATTCTGTTTCGTTTTACTTTTTACACGAACAGAAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAGGTTCACTCTCTATTTTCTACATTGTTCAGATTTTCTCCAGATTTACTAGATTTGTTTGAACGCATAACCAAAATTATGTAGATATCTGATTCTATGACAAATTTTGATGACCGGATTTTTATCATATGCACTGATCCTGTTGAAATAATGAATAGTAAAGCGGTGATTGGAAAAGGGGATCAAATTACATTGGATTATTGCTTGATTTCTTGGATTCCTTACAGCTTAAGAAAATCCAGCAAATCTTTTAACTATATCTTAGTAATATCTTGGTACTAAGTTTCTCTAATAAATTTTATCACTTACCCAAAAAAGGTGAAAAAAAGGAGGATCAGAATTGTTTCTTTGTGCGATAAAGTTCTCAGTTGATTTTAACATGTGTTTGTCGTCTCATTTCAACGGCAAGGTTTAGCTGCTGGTGATTGTGTCGCATATTCTCCGTTGAACTATCTTTTGAAGTTTTATTTTCATTGTAATGTGACACTGCTTCTCTTTTTCCTCGTATAACCACCGGCTAACTAGCTGCTGAAACTTTTACTTTTAGCTTATTCTTGCAATAGCTATTGGAAAATCACCTTTGAGAGAAATAATGGAGAAAATATTATTGAATTGCTCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGGAAATCTTTTCTAACTAGAATTCCTATTCTAAGTAAGAAATACTTATTTCTATTCTAACACTCCCCCTCAAGCTGGTGCATACAAATTATATGCACCTAGCTTGTTACAGATGTAATTAATACGAGGACATGTGAGAGACTTAGTGAACATATCCGCAAGCTGATCATTTGACTTCACAAATTTTGTAACAATATCTCCTGAGAGTATCTTTTCTCTGAGAAAGTGACAGTCAATCTCAATGTGCTTAGTCCTTTCATGAAACACTGGATTTGATGCGATATGAAGAGCCGCTTGATTATCACACAAAAGTTCCATCTGATCAATTTTGCCGAATTTTAGTTCTCCCAGTAATTATTTGTGCCAAACTAACTCACAAGTTGCTGTCGCTATTGCTCGATATTCTGATTCTGCACTAGATTGAGAAGCCACATTTTGTTTCTTACTCTTCCACGACACCAAATTACCTCCAACTAAAACACAATATCCGGATGTCAAACGTCTGTTAGAGGGTAATCCTGCCCAATCAGTGTCTGTATATCCAATAATATGCTCATGACCTTGATCCTCAAAGAGTAGTCCTTTGCCGGGGGCTGACTTTATATATCGAAGAATATGAACAACTGCTTCCCAATGACTATCACAAGGGGAAGTCATAAACTGACTTACAACACTCACGGGAAAAGAGATGCCTGGTCTAGTCACTATGAGATAATTCAACTTTCCAACAAGTCGTCTATACCTTTAAGGATTACTAAGTGGCTCCACCTGTCTCGGAAGAAGTTTAACATTCGGATCCATCGGAGTGTCAATAGGTGTACATCCCATCATTCCTGTCTCCTCAAGAATGTCTAAGGCATACTTGTGTTTAGAGATAACAATGCCTGATCTAGATTGAGCAACCTCAATACCTAGAAAATACTTCAATCTACCAAGGTCTTTTGTCTGAAAGTGCTTAAAAAGATGTTGCTTTATATCGGTGATATAGTCTTGATCATTATCAGTGGTAACAATATCATCAACATAAACAACCAAATAGATACATCGACCTGGTGCAGAATGTCGATAAAACACAAAGTGATTTGATCCATTACGAGTCATGCCAAACTTCTGAATTACTGTGCTAAACTTCCCAAACCAAGCTCGAGGAGACTGTTTCAGACCATAGAGTGACCTACGCAATCGACATACAAGGCTACTAGACTCCCCCTGAGCAACAAAACTAGGTGGTTGCTCCATATAGACTTCTTCCTCAAGATCACTAGCAGAAAAGCATTCTTTATGTCCAACTGATAAAGAGGACAATGACGAACAACAACCATAGATTAGAAAAAGACGAACATATGCTATTTTAGCCACAGGAGCAAAAGTGTCACTATAATCTAGCCCAAATATCTGAGTATACCCTTTGGCGACAAGGAGAACCTTAAGTCGATCAACCTAACCATCTAGACCAATTTTGACTGCATAAACCCAATGACAACCAACAGTAGATTTACATGCAGGAAGGGAGACAAGCTCCCAAGTATCACTCTTATGTAAAGCAGACATCTCATCAACCATAGCCTGCCTCCATCTAGAATGAGAAAGTGCTTCACCTATAGTCTTAGGAATGGAAATAGAGGACAATGACGACACAAAGGCATAATGGGTGATGATATATGATGATAACTTAAGAAGGTAAATGCGGGTTAGTATTTCGAGTAGATTGTATACCTTTTTGAAGTGCAAGCGGTGGGCTAGGTAGAGGCAAGTCCGCAGTAGGAGCAGGGTCTGGCGCATGACATGAATCATCTGGGACTAGGGTTGGATGTGGACGACGATGATAAGTTAGTAGTGGTGGCACTGCAACTGGAGATGTAGACGTAACTGTAGATCCCTCAAAGGTTGGCACAGGTAAAATTTGAGGTATGGGTAAGACCATAGAGACATCACTACGATCAGAAGATGTATAATAAGGCTGAGACTCAAAAAATGTAACATCAACAGACATAAGGTATCGGTGAAGAACATGTGAATAACAACGATATCCTTTTTGAACTCTAGAGTAACCAAGAAAGACACATTTGAGGCACGAGGAGCTAATTTATCTTTTCCTGGGGCTAAATTATGAAGAAAGCATGTACTCCAAACGACACGAGAGGGGATAGGATAAAGATGTGACTGAGGAAACAATATGGAATATGGAACATGATTTTGAATATAAGAAGAGGGCATTCTGTTAATTTAATAATAAGCAGAAAGGACTGCATCGCCCCAAAAATGCATCGAAACATGGCAATTCTATGAGGAGAGTGCGAGCAGTCTCTATGAGATATGCCTATTCTTTCTTTCTGCGACACCATTTTGTTGAGGAGTGTATGGACAAGATGTTTGGTGAATGATTCCGTGGTGAGACATAAATTCCTGAAATTGGGGTGATAAGTATACTAAGGCATTATCACTACGGAATGTACGAATAGAAACACCAAACTGATTTTGTATTTCAGCAAAGAAAACTTTGAAAATAGAAAATAACTCAGAACGATCTTTCATTAAGAAAACCCAAGTGCATCTCGAATAATCATCAATGAAACTAACAAAATAACGAAATCCTAAGGGGGAACTGACTCTACTAGTACCCCAAATATTAGAATGAACTAATGAAAAAATAGACTCTGAACGACCCTCAGTACTACGAGAAAATGTAGCACGAGTGTGTTTCCCAAATTGACACGACTCACAATCTAATGTGGATAAACCAGACAAACTAGGTACCATCTTTTTCAATTTGGATAGACTTGAGTGTCCCAAACGTTTGTGAATTAGATCTGAGGAATCTGTAACGGAGCATGCTATTAAAGAATTAGAAGAGGTAAGATAGTAAAGGCCTTGTGATTCATATCTTGTTCCAATAGTCTGTCCTGTACTGCGGTCCTGCATGACAAAGAAATGATCAAAAAAATTATGCTACAATGTAGGGCTTTCGTCAAACGACTAACCGATGCTAGATTAAAAGGAGAACCAGGGACATAAAGAACAGAGTCAAGAGTGACAGAAGATATGGGTTTGGCTTTTCCAACCCCTTTTGGTTTTGTTTGTATCCCATTGGCTAATGTAATAGATGAAAGAGATTATGAATAGATTATATCAGATAAAAGTGATTTATTACCAGTGATATGATCAGAAGCCCCCGATTCTATGACCCATGATCCAATAGTGTTAGACTGTGATATACTAGTACAAAATATTACCCGCAACAGAAACATTAGGTTTTGCAATCGAAACTACTTGTAGAGACGTTTGTTTATTTGCACAATACGGAAAAAACTCTATATATTCCTTTAGAACAACAGGATCATAACTGGGTGATCCACCATGCAAAATAAAACATATGTCACGAGTGTGTCCAGGTTTATGACATGACTACACTTAGATCGAGATTTTTCAAAAAATTCTCTCCCCCGTCTATTCTCCATGGATTTGTATGTACGCTTGGAACTGCCAGAAGCTGCTACACAAGTCTGAAAATATTGGAAGCTGCCGAAATCTGCCCGCAGTGGCCTGAAAAATTCTGATATTGCCGGAATTTTGCTGGGAACTGCCCAAAAAAAATCACCGGAACCCTAATTTCGGTGATCGGATCTAGAGATAACTGTATGGTTCTTACCGAAAACACTGGACGACCCTAACAGAAGAGAGAAACTCGAAAAAAAGAAGAGAGACCCGAGCAGCACTCACGCGCCGGAAGCTGCCCAAAAATCACCGCAACCCTAATTTCGGTGATCGAATCTAAATAAAAATGGTCAAAAACAGTATAGTCTGGGTCGGAATGGCTGGACGACCCCACCTGTCGAAAAAAATCTCAAAGACTATGGACGGAAAAGTCCTCACGCGCCGGCGAGTGAGCCAGATCTCGCCGGAATCTGCCACCTTCGATCGGCGCGTGAGGGCGCGTGCGGTGCTGTTTTCTGGTGGTTCTTGCTGGGGTTTGGTCGCGGGAGGTTTCCTAGCCTCGTGTTGGTGTTGGTTTTCGCACAACACCCACTAAATAAAAAATGATAAAATCAGTCCCAAACGTCACCGGAAATTGAATTGTTTGTTTCTCACCAATGCCCTGATACCATGAGAGAAATAATGGAGAAAATATTATTGAATTGCGCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGAAAACCTTTTCCAACTAGAATTCCTATTGTAATTCCTATTCTAAGTAAGAAATATTTATTCCTATTCTAACAACCTCTATCCTGGATTTGATCTTCTATTTTGTGTTTGTGGCCCTCATCATGTCAAATTATATTGTTTGTAGTAAAAGAGAAGAATTGTTTGTACGTACTACATGTGTCTATTTCATGTCTATTGAAAGTTATTCCTTTTGATTAATTAAATCAACATTAGTGGCTATCTTAATGTTTATATTCTACAACGACTTGAGCTAGTATTTTTCTTACAGAATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTGGTGAGTTTTTCCTTCTTGGTTGGTTTCAGAATATATCTATCTCTAACTCAATTACCTGAAATATGTTTTTATTTCAATTTCCAGGACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAGGTGAGTTACTTTTGAAAGACTGGAGTGGAGTTTCCTTCCAGTTGAGGAGTAGTCTCCATTCTCTTATTTTCTTTGGTGCACACAGGGGGTACCTGGTGTATAGATAATTAGTTGGAGTTCGTAGACAATCATATCTTGTTGTAGATGCTTTGCCTTTTGGTATACGCCTTGTATATGGCCAGTTTGCGAATATGAATGAAAAAATATTTACCTGATTAAAAAAAACCCAATTTTTAGTTGGCATGTCCTTTATCTTTTACATTTCCCGGTTGCAGATCTTAGTATTCCATATTTCAAATAAGGGATCGTGAATGATATTCCCTTATAAAAAAGGTTGCATGATCAACTAAATTTTGGGCAAGGAATCAAAACAAATAAAATCTTGCAACCAATGCTAAATGATAGACTTATATTTCTACAAGACTAGAAGTTGTAGTGTGTTATACTCAAAGGCTCATCTGCCACACATAACTGCTAAACCAGTGAAATCTTCTTTTTGATAAGATAACTGCTAAAATCGATGAGTTGAGCAGAAGGCCTGATAATTGCTTGTTACAAAGCCCCATCCATTGTTTTGGCTTACTAGATAATATGCGTCTCATTTGTTCCGGATGATTGTCATTAACTAGAGAGGGTAAACCTTATGCCGGGCAAAGGATGACTAGAACTTACATTTAGTGAGAAATGACCCTGATACTCAATGTCTTCTGGGGTAGAAATACCTAAATTGCATGTGATGGGTCAAGGGATGATGACCATAGTGGCTGTTTATGGCCTTGATCCTGCCTATTTTAGTGGAGCAGGTTTTGTGTCTATATATCAGAAAGACATGCAAAAGAAATTTCTTCTAGAACTCTCCTCCATATTTGAACTTTGGTAGCCCTAGAAGTTATTTTCTTTTTCTCCTTTTGTTTTATCCTAATGTCTTTTGATAAGGAGATTTTCGGATCATTATGTTATTATATACCTCATCACTAAAAAAGAGTTCTCTGTGAAAGACAACCAACAATTTATACACACAATAAACTTGTAAGTGCACAAAAAATTAACAATAGGAGGTTATTTCTCAACTGTACGAAATCATAATCCACCCCTTTCAAAAGACCTCCTACTTCTCTCCTTCTAAAGAACCACTGGAGCTAACGGAGCTACATCCCATTTCACTTCTTCTCCTCTTTATTGTAAAGCCCCCCACTCCCCCAGCATTTGCATGATTCTTAAATTTCAAAAATGTTAAAAGTAAGTGGTCACAACTGCCAGGCTATTAGGCAGTGTAGTTGGAGTTAATTAACATCCTCAACCCTCATTTCACACATGTAACACTTTTTGCATATATCAGGCAGCTTTCTTGAAGGAATTGCTCTATAAGTACTGCTTCATATGTTGCTGTCCAGCAAAAGCAAGCCACTTAATAAGGAGCTTCAGTTTTCCAAATTTGTTTCCATGTCAATCTTTGTGTTGCCGCCTTGTATATGCTTGAATACTGCATATGCTTAATTGTCTATGTAAATGATGATATTAATGGCATCTTAATTGACCTTTCCCCTTATGCTGCTTGAACTTGATATGAGTTTCCTCTTCCCCTTTGTTTATTTTGTTGATACAGTTTTATAAGTGGTTCGCGGATCTTGAAGCAGCCATGAAATTAGAGGTTGGTCTTTAGCTTGTTTATATGTCTTCCGTTTCTTCCAAAAGTTGTGAGTCATACGTTTCATCTTTTTCACTTGCGGACTAAAAGATATTACATATGCTTTCTTTCTATATATAGTCTGAAGAAAAATATCAGCATTAT</genome_strand>
        <mrna_strand>TGAATTTTGAAGAAAAGGAACGTCGTTACTGTAATTTTCATATGAGCGGAAAACCCAAAGCTAAGCCAGAGGATCATCCCAGATCTCCAACTTCATCGTTCAAATCACCCTTTTTTTCAACTTCGAAGTCGAAATTGCTTCCATTGAAGCTCCAAAATCCATATG...........................................................................................................................AAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTG....................................................................................GACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGGTTCGCGGATCTTGAAGCAGCCATGAAATTAGAG.....................................................................................................................TCTGAAGAAAAATATCAGCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E330382" ref_strand="+" ref_description="SGN-E330382 [cTOD-4-K3]">
      <seq>ccaaagctaagccagaggatcatcccagatctccaacttcatcgttcaaatcaccctttttttcaacttcgaagtcgaaattgcttccattgaagctccaaaatccatatggtgatggctacaatcatctgtagtattgattgttttggtatcagtgattgactagttactacacagtccgtttccccctcatttttcatcaattctgtttcgttttactttttacacgaacagaaacagttgcaaagtagtggaagaagagagtgatgataatactatggcggcaacgacaaggccgggggttctcaagtccgaagctgtttccaaaggctataatttcgcttctacttgggaacagaatgctctgttaacagagcaacaatcagcagccatacaagcactttcccatgcagttgccgagagacctttcccgtccaatttggaccaagtttctggacatgataacagcctctctgtttcaacaaagcttagttctctagaggattcaagggccattgaagcagtcctagtgaatacaaatcagttttataagtgggttcgcggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="46190" stop="39831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45890" g_stop="45533" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45532" i_stop="40403" i_length="5130">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40402" g_stop="40319" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="442" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40318" i_stop="40235" i_length="84">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40234" g_stop="40133" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="544" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E330382" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45890" e_stop="45533"/>
          <exon e_start="40402" e_stop="40319"/>
          <exon e_start="40234" e_stop="40133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGCTAAGCCAGAGGATCATCCCAGATCTCCAACTTCATCGTTCAAATCACCCTTTTTTTCAACTTCGAAGTCGAAATTGCTTCCATTGAAGCTCCAAAATCCATATGGTGATGGCTACAATCATCTGTAGTATTGATTGTTTTGGTATCAGTAATTGACTAGTTACTACACAGTCCGTTTCCCCCTCATTTTTCATCAATTCTGTTTCGTTTTACTTTTTACACGAACAGAAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAGGTTCACTCTCTATTTTCTACATTGTTCAGATTTTCTCCAGATTTACTAGATTTGTTTGAACGCATAACCAAAATTATGTAGATATCTGATTCTATGACAAATTTTGATGACCGGATTTTTATCATATGCACTGATCCTGTTGAAATAATGAATAGTAAAGCGGTGATTGGAAAAGGGGATCAAATTACATTGGATTATTGCTTGATTTCTTGGATTCCTTACAGCTTAAGAAAATCCAGCAAATCTTTTAACTATATCTTAGTAATATCTTGGTACTAAGTTTCTCTAATAAATTTTATCACTTACCCAAAAAAGGTGAAAAAAAGGAGGATCAGAATTGTTTCTTTGTGCGATAAAGTTCTCAGTTGATTTTAACATGTGTTTGTCGTCTCATTTCAACGGCAAGGTTTAGCTGCTGGTGATTGTGTCGCATATTCTCCGTTGAACTATCTTTTGAAGTTTTATTTTCATTGTAATGTGACACTGCTTCTCTTTTTCCTCGTATAACCACCGGCTAACTAGCTGCTGAAACTTTTACTTTTAGCTTATTCTTGCAATAGCTATTGGAAAATCACCTTTGAGAGAAATAATGGAGAAAATATTATTGAATTGCTCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGGAAATCTTTTCTAACTAGAATTCCTATTCTAAGTAAGAAATACTTATTTCTATTCTAACACTCCCCCTCAAGCTGGTGCATACAAATTATATGCACCTAGCTTGTTACAGATGTAATTAATACGAGGACATGTGAGAGACTTAGTGAACATATCCGCAAGCTGATCATTTGACTTCACAAATTTTGTAACAATATCTCCTGAGAGTATCTTTTCTCTGAGAAAGTGACAGTCAATCTCAATGTGCTTAGTCCTTTCATGAAACACTGGATTTGATGCGATATGAAGAGCCGCTTGATTATCACACAAAAGTTCCATCTGATCAATTTTGCCGAATTTTAGTTCTCCCAGTAATTATTTGTGCCAAACTAACTCACAAGTTGCTGTCGCTATTGCTCGATATTCTGATTCTGCACTAGATTGAGAAGCCACATTTTGTTTCTTACTCTTCCACGACACCAAATTACCTCCAACTAAAACACAATATCCGGATGTCAAACGTCTGTTAGAGGGTAATCCTGCCCAATCAGTGTCTGTATATCCAATAATATGCTCATGACCTTGATCCTCAAAGAGTAGTCCTTTGCCGGGGGCTGACTTTATATATCGAAGAATATGAACAACTGCTTCCCAATGACTATCACAAGGGGAAGTCATAAACTGACTTACAACACTCACGGGAAAAGAGATGCCTGGTCTAGTCACTATGAGATAATTCAACTTTCCAACAAGTCGTCTATACCTTTAAGGATTACTAAGTGGCTCCACCTGTCTCGGAAGAAGTTTAACATTCGGATCCATCGGAGTGTCAATAGGTGTACATCCCATCATTCCTGTCTCCTCAAGAATGTCTAAGGCATACTTGTGTTTAGAGATAACAATGCCTGATCTAGATTGAGCAACCTCAATACCTAGAAAATACTTCAATCTACCAAGGTCTTTTGTCTGAAAGTGCTTAAAAAGATGTTGCTTTATATCGGTGATATAGTCTTGATCATTATCAGTGGTAACAATATCATCAACATAAACAACCAAATAGATACATCGACCTGGTGCAGAATGTCGATAAAACACAAAGTGATTTGATCCATTACGAGTCATGCCAAACTTCTGAATTACTGTGCTAAACTTCCCAAACCAAGCTCGAGGAGACTGTTTCAGACCATAGAGTGACCTACGCAATCGACATACAAGGCTACTAGACTCCCCCTGAGCAACAAAACTAGGTGGTTGCTCCATATAGACTTCTTCCTCAAGATCACTAGCAGAAAAGCATTCTTTATGTCCAACTGATAAAGAGGACAATGACGAACAACAACCATAGATTAGAAAAAGACGAACATATGCTATTTTAGCCACAGGAGCAAAAGTGTCACTATAATCTAGCCCAAATATCTGAGTATACCCTTTGGCGACAAGGAGAACCTTAAGTCGATCAACCTAACCATCTAGACCAATTTTGACTGCATAAACCCAATGACAACCAACAGTAGATTTACATGCAGGAAGGGAGACAAGCTCCCAAGTATCACTCTTATGTAAAGCAGACATCTCATCAACCATAGCCTGCCTCCATCTAGAATGAGAAAGTGCTTCACCTATAGTCTTAGGAATGGAAATAGAGGACAATGACGACACAAAGGCATAATGGGTGATGATATATGATGATAACTTAAGAAGGTAAATGCGGGTTAGTATTTCGAGTAGATTGTATACCTTTTTGAAGTGCAAGCGGTGGGCTAGGTAGAGGCAAGTCCGCAGTAGGAGCAGGGTCTGGCGCATGACATGAATCATCTGGGACTAGGGTTGGATGTGGACGACGATGATAAGTTAGTAGTGGTGGCACTGCAACTGGAGATGTAGACGTAACTGTAGATCCCTCAAAGGTTGGCACAGGTAAAATTTGAGGTATGGGTAAGACCATAGAGACATCACTACGATCAGAAGATGTATAATAAGGCTGAGACTCAAAAAATGTAACATCAACAGACATAAGGTATCGGTGAAGAACATGTGAATAACAACGATATCCTTTTTGAACTCTAGAGTAACCAAGAAAGACACATTTGAGGCACGAGGAGCTAATTTATCTTTTCCTGGGGCTAAATTATGAAGAAAGCATGTACTCCAAACGACACGAGAGGGGATAGGATAAAGATGTGACTGAGGAAACAATATGGAATATGGAACATGATTTTGAATATAAGAAGAGGGCATTCTGTTAATTTAATAATAAGCAGAAAGGACTGCATCGCCCCAAAAATGCATCGAAACATGGCAATTCTATGAGGAGAGTGCGAGCAGTCTCTATGAGATATGCCTATTCTTTCTTTCTGCGACACCATTTTGTTGAGGAGTGTATGGACAAGATGTTTGGTGAATGATTCCGTGGTGAGACATAAATTCCTGAAATTGGGGTGATAAGTATACTAAGGCATTATCACTACGGAATGTACGAATAGAAACACCAAACTGATTTTGTATTTCAGCAAAGAAAACTTTGAAAATAGAAAATAACTCAGAACGATCTTTCATTAAGAAAACCCAAGTGCATCTCGAATAATCATCAATGAAACTAACAAAATAACGAAATCCTAAGGGGGAACTGACTCTACTAGTACCCCAAATATTAGAATGAACTAATGAAAAAATAGACTCTGAACGACCCTCAGTACTACGAGAAAATGTAGCACGAGTGTGTTTCCCAAATTGACACGACTCACAATCTAATGTGGATAAACCAGACAAACTAGGTACCATCTTTTTCAATTTGGATAGACTTGAGTGTCCCAAACGTTTGTGAATTAGATCTGAGGAATCTGTAACGGAGCATGCTATTAAAGAATTAGAAGAGGTAAGATAGTAAAGGCCTTGTGATTCATATCTTGTTCCAATAGTCTGTCCTGTACTGCGGTCCTGCATGACAAAGAAATGATCAAAAAAATTATGCTACAATGTAGGGCTTTCGTCAAACGACTAACCGATGCTAGATTAAAAGGAGAACCAGGGACATAAAGAACAGAGTCAAGAGTGACAGAAGATATGGGTTTGGCTTTTCCAACCCCTTTTGGTTTTGTTTGTATCCCATTGGCTAATGTAATAGATGAAAGAGATTATGAATAGATTATATCAGATAAAAGTGATTTATTACCAGTGATATGATCAGAAGCCCCCGATTCTATGACCCATGATCCAATAGTGTTAGACTGTGATATACTAGTACAAAATATTACCCGCAACAGAAACATTAGGTTTTGCAATCGAAACTACTTGTAGAGACGTTTGTTTATTTGCACAATACGGAAAAAACTCTATATATTCCTTTAGAACAACAGGATCATAACTGGGTGATCCACCATGCAAAATAAAACATATGTCACGAGTGTGTCCAGGTTTATGACATGACTACACTTAGATCGAGATTTTTCAAAAAATTCTCTCCCCCGTCTATTCTCCATGGATTTGTATGTACGCTTGGAACTGCCAGAAGCTGCTACACAAGTCTGAAAATATTGGAAGCTGCCGAAATCTGCCCGCAGTGGCCTGAAAAATTCTGATATTGCCGGAATTTTGCTGGGAACTGCCCAAAAAAAATCACCGGAACCCTAATTTCGGTGATCGGATCTAGAGATAACTGTATGGTTCTTACCGAAAACACTGGACGACCCTAACAGAAGAGAGAAACTCGAAAAAAAGAAGAGAGACCCGAGCAGCACTCACGCGCCGGAAGCTGCCCAAAAATCACCGCAACCCTAATTTCGGTGATCGAATCTAAATAAAAATGGTCAAAAACAGTATAGTCTGGGTCGGAATGGCTGGACGACCCCACCTGTCGAAAAAAATCTCAAAGACTATGGACGGAAAAGTCCTCACGCGCCGGCGAGTGAGCCAGATCTCGCCGGAATCTGCCACCTTCGATCGGCGCGTGAGGGCGCGTGCGGTGCTGTTTTCTGGTGGTTCTTGCTGGGGTTTGGTCGCGGGAGGTTTCCTAGCCTCGTGTTGGTGTTGGTTTTCGCACAACACCCACTAAATAAAAAATGATAAAATCAGTCCCAAACGTCACCGGAAATTGAATTGTTTGTTTCTCACCAATGCCCTGATACCATGAGAGAAATAATGGAGAAAATATTATTGAATTGCGCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGAAAACCTTTTCCAACTAGAATTCCTATTGTAATTCCTATTCTAAGTAAGAAATATTTATTCCTATTCTAACAACCTCTATCCTGGATTTGATCTTCTATTTTGTGTTTGTGGCCCTCATCATGTCAAATTATATTGTTTGTAGTAAAAGAGAAGAATTGTTTGTACGTACTACATGTGTCTATTTCATGTCTATTGAAAGTTATTCCTTTTGATTAATTAAATCAACATTAGTGGCTATCTTAATGTTTATATTCTACAACGACTTGAGCTAGTATTTTTCTTACAGAATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTGGTGAGTTTTTCCTTCTTGGTTGGTTTCAGAATATATCTATCTCTAACTCAATTACCTGAAATATGTTTTTATTTCAATTTCCAGGACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAG</genome_strand>
        <mrna_strand>CCAAAGCTAAGCCAGAGGATCATCCCAGATCTCCAACTTCATCGTTCAAATCACCCTTTTTTTCAACTTCGAAGTCGAAATTGCTTCCATTGAAGCTCCAAAATCCATATGGTGATGGCTACAATCATCTGTAGTATTGATTGTTTTGGTATCAGTGATTGACTAGTTACTACACAGTCCGTTTCCCCCTCATTTTTCATCAATTCTGTTTCGTTTTACTTTTTACACGAACAGAAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTG....................................................................................GACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAAGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E394131" ref_strand="+" ref_description="SGN-E394131 [TUS-40-N13]">
      <seq>cccaaagctaagccagaggatcatcccagatctccaacttcatcgttcaaatcaccctttttttcaacttcgaagtcgaaattgcttccattgaagctccaaaatccatatggtgatggctacaatcatctgtagtattgattgttttggtatcagtgattgactagttactacacagtccgtttccccctcatttttcatcaattctgtttcgttttactttttacacgaacagaaacagttgcaaagtagtggaagaagagagtgatgataatactatggcggcaacgagaaggccgggggttctcaagtccgaagctgtttccaaaggctataatttcgcttctacttgggaacagaatgctctgttaacagagcaacaatcagcagccatacaagcactttcccatgcagttgccgagagacctttcccgtccaatttggacgaagtttctggacatgataacagcctctctgtttcaacaaagcttagttctctagagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="46191" stop="39874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45891" g_stop="45533" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45532" i_stop="40403" i_length="5130">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40402" g_stop="40319" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="443" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40318" i_stop="40235" i_length="84">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40234" g_stop="40174" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="504" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E394131" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45891" e_stop="45533"/>
          <exon e_start="40402" e_stop="40319"/>
          <exon e_start="40234" e_stop="40174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAAGCTAAGCCAGAGGATCATCCCAGATCTCCAACTTCATCGTTCAAATCACCCTTTTTTTCAACTTCGAAGTCGAAATTGCTTCCATTGAAGCTCCAAAATCCATATGGTGATGGCTACAATCATCTGTAGTATTGATTGTTTTGGTATCAGTAATTGACTAGTTACTACACAGTCCGTTTCCCCCTCATTTTTCATCAATTCTGTTTCGTTTTACTTTTTACACGAACAGAAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAGGTTCACTCTCTATTTTCTACATTGTTCAGATTTTCTCCAGATTTACTAGATTTGTTTGAACGCATAACCAAAATTATGTAGATATCTGATTCTATGACAAATTTTGATGACCGGATTTTTATCATATGCACTGATCCTGTTGAAATAATGAATAGTAAAGCGGTGATTGGAAAAGGGGATCAAATTACATTGGATTATTGCTTGATTTCTTGGATTCCTTACAGCTTAAGAAAATCCAGCAAATCTTTTAACTATATCTTAGTAATATCTTGGTACTAAGTTTCTCTAATAAATTTTATCACTTACCCAAAAAAGGTGAAAAAAAGGAGGATCAGAATTGTTTCTTTGTGCGATAAAGTTCTCAGTTGATTTTAACATGTGTTTGTCGTCTCATTTCAACGGCAAGGTTTAGCTGCTGGTGATTGTGTCGCATATTCTCCGTTGAACTATCTTTTGAAGTTTTATTTTCATTGTAATGTGACACTGCTTCTCTTTTTCCTCGTATAACCACCGGCTAACTAGCTGCTGAAACTTTTACTTTTAGCTTATTCTTGCAATAGCTATTGGAAAATCACCTTTGAGAGAAATAATGGAGAAAATATTATTGAATTGCTCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGGAAATCTTTTCTAACTAGAATTCCTATTCTAAGTAAGAAATACTTATTTCTATTCTAACACTCCCCCTCAAGCTGGTGCATACAAATTATATGCACCTAGCTTGTTACAGATGTAATTAATACGAGGACATGTGAGAGACTTAGTGAACATATCCGCAAGCTGATCATTTGACTTCACAAATTTTGTAACAATATCTCCTGAGAGTATCTTTTCTCTGAGAAAGTGACAGTCAATCTCAATGTGCTTAGTCCTTTCATGAAACACTGGATTTGATGCGATATGAAGAGCCGCTTGATTATCACACAAAAGTTCCATCTGATCAATTTTGCCGAATTTTAGTTCTCCCAGTAATTATTTGTGCCAAACTAACTCACAAGTTGCTGTCGCTATTGCTCGATATTCTGATTCTGCACTAGATTGAGAAGCCACATTTTGTTTCTTACTCTTCCACGACACCAAATTACCTCCAACTAAAACACAATATCCGGATGTCAAACGTCTGTTAGAGGGTAATCCTGCCCAATCAGTGTCTGTATATCCAATAATATGCTCATGACCTTGATCCTCAAAGAGTAGTCCTTTGCCGGGGGCTGACTTTATATATCGAAGAATATGAACAACTGCTTCCCAATGACTATCACAAGGGGAAGTCATAAACTGACTTACAACACTCACGGGAAAAGAGATGCCTGGTCTAGTCACTATGAGATAATTCAACTTTCCAACAAGTCGTCTATACCTTTAAGGATTACTAAGTGGCTCCACCTGTCTCGGAAGAAGTTTAACATTCGGATCCATCGGAGTGTCAATAGGTGTACATCCCATCATTCCTGTCTCCTCAAGAATGTCTAAGGCATACTTGTGTTTAGAGATAACAATGCCTGATCTAGATTGAGCAACCTCAATACCTAGAAAATACTTCAATCTACCAAGGTCTTTTGTCTGAAAGTGCTTAAAAAGATGTTGCTTTATATCGGTGATATAGTCTTGATCATTATCAGTGGTAACAATATCATCAACATAAACAACCAAATAGATACATCGACCTGGTGCAGAATGTCGATAAAACACAAAGTGATTTGATCCATTACGAGTCATGCCAAACTTCTGAATTACTGTGCTAAACTTCCCAAACCAAGCTCGAGGAGACTGTTTCAGACCATAGAGTGACCTACGCAATCGACATACAAGGCTACTAGACTCCCCCTGAGCAACAAAACTAGGTGGTTGCTCCATATAGACTTCTTCCTCAAGATCACTAGCAGAAAAGCATTCTTTATGTCCAACTGATAAAGAGGACAATGACGAACAACAACCATAGATTAGAAAAAGACGAACATATGCTATTTTAGCCACAGGAGCAAAAGTGTCACTATAATCTAGCCCAAATATCTGAGTATACCCTTTGGCGACAAGGAGAACCTTAAGTCGATCAACCTAACCATCTAGACCAATTTTGACTGCATAAACCCAATGACAACCAACAGTAGATTTACATGCAGGAAGGGAGACAAGCTCCCAAGTATCACTCTTATGTAAAGCAGACATCTCATCAACCATAGCCTGCCTCCATCTAGAATGAGAAAGTGCTTCACCTATAGTCTTAGGAATGGAAATAGAGGACAATGACGACACAAAGGCATAATGGGTGATGATATATGATGATAACTTAAGAAGGTAAATGCGGGTTAGTATTTCGAGTAGATTGTATACCTTTTTGAAGTGCAAGCGGTGGGCTAGGTAGAGGCAAGTCCGCAGTAGGAGCAGGGTCTGGCGCATGACATGAATCATCTGGGACTAGGGTTGGATGTGGACGACGATGATAAGTTAGTAGTGGTGGCACTGCAACTGGAGATGTAGACGTAACTGTAGATCCCTCAAAGGTTGGCACAGGTAAAATTTGAGGTATGGGTAAGACCATAGAGACATCACTACGATCAGAAGATGTATAATAAGGCTGAGACTCAAAAAATGTAACATCAACAGACATAAGGTATCGGTGAAGAACATGTGAATAACAACGATATCCTTTTTGAACTCTAGAGTAACCAAGAAAGACACATTTGAGGCACGAGGAGCTAATTTATCTTTTCCTGGGGCTAAATTATGAAGAAAGCATGTACTCCAAACGACACGAGAGGGGATAGGATAAAGATGTGACTGAGGAAACAATATGGAATATGGAACATGATTTTGAATATAAGAAGAGGGCATTCTGTTAATTTAATAATAAGCAGAAAGGACTGCATCGCCCCAAAAATGCATCGAAACATGGCAATTCTATGAGGAGAGTGCGAGCAGTCTCTATGAGATATGCCTATTCTTTCTTTCTGCGACACCATTTTGTTGAGGAGTGTATGGACAAGATGTTTGGTGAATGATTCCGTGGTGAGACATAAATTCCTGAAATTGGGGTGATAAGTATACTAAGGCATTATCACTACGGAATGTACGAATAGAAACACCAAACTGATTTTGTATTTCAGCAAAGAAAACTTTGAAAATAGAAAATAACTCAGAACGATCTTTCATTAAGAAAACCCAAGTGCATCTCGAATAATCATCAATGAAACTAACAAAATAACGAAATCCTAAGGGGGAACTGACTCTACTAGTACCCCAAATATTAGAATGAACTAATGAAAAAATAGACTCTGAACGACCCTCAGTACTACGAGAAAATGTAGCACGAGTGTGTTTCCCAAATTGACACGACTCACAATCTAATGTGGATAAACCAGACAAACTAGGTACCATCTTTTTCAATTTGGATAGACTTGAGTGTCCCAAACGTTTGTGAATTAGATCTGAGGAATCTGTAACGGAGCATGCTATTAAAGAATTAGAAGAGGTAAGATAGTAAAGGCCTTGTGATTCATATCTTGTTCCAATAGTCTGTCCTGTACTGCGGTCCTGCATGACAAAGAAATGATCAAAAAAATTATGCTACAATGTAGGGCTTTCGTCAAACGACTAACCGATGCTAGATTAAAAGGAGAACCAGGGACATAAAGAACAGAGTCAAGAGTGACAGAAGATATGGGTTTGGCTTTTCCAACCCCTTTTGGTTTTGTTTGTATCCCATTGGCTAATGTAATAGATGAAAGAGATTATGAATAGATTATATCAGATAAAAGTGATTTATTACCAGTGATATGATCAGAAGCCCCCGATTCTATGACCCATGATCCAATAGTGTTAGACTGTGATATACTAGTACAAAATATTACCCGCAACAGAAACATTAGGTTTTGCAATCGAAACTACTTGTAGAGACGTTTGTTTATTTGCACAATACGGAAAAAACTCTATATATTCCTTTAGAACAACAGGATCATAACTGGGTGATCCACCATGCAAAATAAAACATATGTCACGAGTGTGTCCAGGTTTATGACATGACTACACTTAGATCGAGATTTTTCAAAAAATTCTCTCCCCCGTCTATTCTCCATGGATTTGTATGTACGCTTGGAACTGCCAGAAGCTGCTACACAAGTCTGAAAATATTGGAAGCTGCCGAAATCTGCCCGCAGTGGCCTGAAAAATTCTGATATTGCCGGAATTTTGCTGGGAACTGCCCAAAAAAAATCACCGGAACCCTAATTTCGGTGATCGGATCTAGAGATAACTGTATGGTTCTTACCGAAAACACTGGACGACCCTAACAGAAGAGAGAAACTCGAAAAAAAGAAGAGAGACCCGAGCAGCACTCACGCGCCGGAAGCTGCCCAAAAATCACCGCAACCCTAATTTCGGTGATCGAATCTAAATAAAAATGGTCAAAAACAGTATAGTCTGGGTCGGAATGGCTGGACGACCCCACCTGTCGAAAAAAATCTCAAAGACTATGGACGGAAAAGTCCTCACGCGCCGGCGAGTGAGCCAGATCTCGCCGGAATCTGCCACCTTCGATCGGCGCGTGAGGGCGCGTGCGGTGCTGTTTTCTGGTGGTTCTTGCTGGGGTTTGGTCGCGGGAGGTTTCCTAGCCTCGTGTTGGTGTTGGTTTTCGCACAACACCCACTAAATAAAAAATGATAAAATCAGTCCCAAACGTCACCGGAAATTGAATTGTTTGTTTCTCACCAATGCCCTGATACCATGAGAGAAATAATGGAGAAAATATTATTGAATTGCGCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGAAAACCTTTTCCAACTAGAATTCCTATTGTAATTCCTATTCTAAGTAAGAAATATTTATTCCTATTCTAACAACCTCTATCCTGGATTTGATCTTCTATTTTGTGTTTGTGGCCCTCATCATGTCAAATTATATTGTTTGTAGTAAAAGAGAAGAATTGTTTGTACGTACTACATGTGTCTATTTCATGTCTATTGAAAGTTATTCCTTTTGATTAATTAAATCAACATTAGTGGCTATCTTAATGTTTATATTCTACAACGACTTGAGCTAGTATTTTTCTTACAGAATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTGGTGAGTTTTTCCTTCTTGGTTGGTTTCAGAATATATCTATCTCTAACTCAATTACCTGAAATATGTTTTTATTTCAATTTCCAGGACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGG</genome_strand>
        <mrna_strand>CCCAAAGCTAAGCCAGAGGATCATCCCAGATCTCCAACTTCATCGTTCAAATCACCCTTTTTTTCAACTTCGAAGTCGAAATTGCTTCCATTGAAGCTCCAAAATCCATATGGTGATGGCTACAATCATCTGTAGTATTGATTGTTTTGGTATCAGTGATTGACTAGTTACTACACAGTCCGTTTCCCCCTCATTTTTCATCAATTCTGTTTCGTTTTACTTTTTACACGAACAGAAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGAGAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTG....................................................................................GACGAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E330878" ref_strand="+" ref_description="SGN-E330878 [cTOD-10-F8]">
      <seq>tggtatcagtaattgactagttactacacagtccgtttccccctcatttttcatcaattctgtttcgttttactttttacacgaacagaaacagttgcaaagtagtggaagaagagagtgatgataatactatggcggcaacgacaaggccgggggttctcaagtccgaagctgtttccaaaggctataatttcgcttctacttgggaacagaatgctctgttaacagagcaacaatcagcagccatacaagcactttcccatgcagttgccgagagacctttcccgtccaatttggaccaagtttctggacatgataacagcctctctgtttcaacaaagcttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="46044" stop="39885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45744" g_stop="45533" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45532" i_stop="40403" i_length="5130">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40402" g_stop="40319" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="296" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40318" i_stop="40235" i_length="84">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40234" g_stop="40185" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="346" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E330878" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45744" e_stop="45533"/>
          <exon e_start="40402" e_stop="40319"/>
          <exon e_start="40234" e_stop="40185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATCAGTAATTGACTAGTTACTACACAGTCCGTTTCCCCCTCATTTTTCATCAATTCTGTTTCGTTTTACTTTTTACACGAACAGAAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAGGTTCACTCTCTATTTTCTACATTGTTCAGATTTTCTCCAGATTTACTAGATTTGTTTGAACGCATAACCAAAATTATGTAGATATCTGATTCTATGACAAATTTTGATGACCGGATTTTTATCATATGCACTGATCCTGTTGAAATAATGAATAGTAAAGCGGTGATTGGAAAAGGGGATCAAATTACATTGGATTATTGCTTGATTTCTTGGATTCCTTACAGCTTAAGAAAATCCAGCAAATCTTTTAACTATATCTTAGTAATATCTTGGTACTAAGTTTCTCTAATAAATTTTATCACTTACCCAAAAAAGGTGAAAAAAAGGAGGATCAGAATTGTTTCTTTGTGCGATAAAGTTCTCAGTTGATTTTAACATGTGTTTGTCGTCTCATTTCAACGGCAAGGTTTAGCTGCTGGTGATTGTGTCGCATATTCTCCGTTGAACTATCTTTTGAAGTTTTATTTTCATTGTAATGTGACACTGCTTCTCTTTTTCCTCGTATAACCACCGGCTAACTAGCTGCTGAAACTTTTACTTTTAGCTTATTCTTGCAATAGCTATTGGAAAATCACCTTTGAGAGAAATAATGGAGAAAATATTATTGAATTGCTCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGGAAATCTTTTCTAACTAGAATTCCTATTCTAAGTAAGAAATACTTATTTCTATTCTAACACTCCCCCTCAAGCTGGTGCATACAAATTATATGCACCTAGCTTGTTACAGATGTAATTAATACGAGGACATGTGAGAGACTTAGTGAACATATCCGCAAGCTGATCATTTGACTTCACAAATTTTGTAACAATATCTCCTGAGAGTATCTTTTCTCTGAGAAAGTGACAGTCAATCTCAATGTGCTTAGTCCTTTCATGAAACACTGGATTTGATGCGATATGAAGAGCCGCTTGATTATCACACAAAAGTTCCATCTGATCAATTTTGCCGAATTTTAGTTCTCCCAGTAATTATTTGTGCCAAACTAACTCACAAGTTGCTGTCGCTATTGCTCGATATTCTGATTCTGCACTAGATTGAGAAGCCACATTTTGTTTCTTACTCTTCCACGACACCAAATTACCTCCAACTAAAACACAATATCCGGATGTCAAACGTCTGTTAGAGGGTAATCCTGCCCAATCAGTGTCTGTATATCCAATAATATGCTCATGACCTTGATCCTCAAAGAGTAGTCCTTTGCCGGGGGCTGACTTTATATATCGAAGAATATGAACAACTGCTTCCCAATGACTATCACAAGGGGAAGTCATAAACTGACTTACAACACTCACGGGAAAAGAGATGCCTGGTCTAGTCACTATGAGATAATTCAACTTTCCAACAAGTCGTCTATACCTTTAAGGATTACTAAGTGGCTCCACCTGTCTCGGAAGAAGTTTAACATTCGGATCCATCGGAGTGTCAATAGGTGTACATCCCATCATTCCTGTCTCCTCAAGAATGTCTAAGGCATACTTGTGTTTAGAGATAACAATGCCTGATCTAGATTGAGCAACCTCAATACCTAGAAAATACTTCAATCTACCAAGGTCTTTTGTCTGAAAGTGCTTAAAAAGATGTTGCTTTATATCGGTGATATAGTCTTGATCATTATCAGTGGTAACAATATCATCAACATAAACAACCAAATAGATACATCGACCTGGTGCAGAATGTCGATAAAACACAAAGTGATTTGATCCATTACGAGTCATGCCAAACTTCTGAATTACTGTGCTAAACTTCCCAAACCAAGCTCGAGGAGACTGTTTCAGACCATAGAGTGACCTACGCAATCGACATACAAGGCTACTAGACTCCCCCTGAGCAACAAAACTAGGTGGTTGCTCCATATAGACTTCTTCCTCAAGATCACTAGCAGAAAAGCATTCTTTATGTCCAACTGATAAAGAGGACAATGACGAACAACAACCATAGATTAGAAAAAGACGAACATATGCTATTTTAGCCACAGGAGCAAAAGTGTCACTATAATCTAGCCCAAATATCTGAGTATACCCTTTGGCGACAAGGAGAACCTTAAGTCGATCAACCTAACCATCTAGACCAATTTTGACTGCATAAACCCAATGACAACCAACAGTAGATTTACATGCAGGAAGGGAGACAAGCTCCCAAGTATCACTCTTATGTAAAGCAGACATCTCATCAACCATAGCCTGCCTCCATCTAGAATGAGAAAGTGCTTCACCTATAGTCTTAGGAATGGAAATAGAGGACAATGACGACACAAAGGCATAATGGGTGATGATATATGATGATAACTTAAGAAGGTAAATGCGGGTTAGTATTTCGAGTAGATTGTATACCTTTTTGAAGTGCAAGCGGTGGGCTAGGTAGAGGCAAGTCCGCAGTAGGAGCAGGGTCTGGCGCATGACATGAATCATCTGGGACTAGGGTTGGATGTGGACGACGATGATAAGTTAGTAGTGGTGGCACTGCAACTGGAGATGTAGACGTAACTGTAGATCCCTCAAAGGTTGGCACAGGTAAAATTTGAGGTATGGGTAAGACCATAGAGACATCACTACGATCAGAAGATGTATAATAAGGCTGAGACTCAAAAAATGTAACATCAACAGACATAAGGTATCGGTGAAGAACATGTGAATAACAACGATATCCTTTTTGAACTCTAGAGTAACCAAGAAAGACACATTTGAGGCACGAGGAGCTAATTTATCTTTTCCTGGGGCTAAATTATGAAGAAAGCATGTACTCCAAACGACACGAGAGGGGATAGGATAAAGATGTGACTGAGGAAACAATATGGAATATGGAACATGATTTTGAATATAAGAAGAGGGCATTCTGTTAATTTAATAATAAGCAGAAAGGACTGCATCGCCCCAAAAATGCATCGAAACATGGCAATTCTATGAGGAGAGTGCGAGCAGTCTCTATGAGATATGCCTATTCTTTCTTTCTGCGACACCATTTTGTTGAGGAGTGTATGGACAAGATGTTTGGTGAATGATTCCGTGGTGAGACATAAATTCCTGAAATTGGGGTGATAAGTATACTAAGGCATTATCACTACGGAATGTACGAATAGAAACACCAAACTGATTTTGTATTTCAGCAAAGAAAACTTTGAAAATAGAAAATAACTCAGAACGATCTTTCATTAAGAAAACCCAAGTGCATCTCGAATAATCATCAATGAAACTAACAAAATAACGAAATCCTAAGGGGGAACTGACTCTACTAGTACCCCAAATATTAGAATGAACTAATGAAAAAATAGACTCTGAACGACCCTCAGTACTACGAGAAAATGTAGCACGAGTGTGTTTCCCAAATTGACACGACTCACAATCTAATGTGGATAAACCAGACAAACTAGGTACCATCTTTTTCAATTTGGATAGACTTGAGTGTCCCAAACGTTTGTGAATTAGATCTGAGGAATCTGTAACGGAGCATGCTATTAAAGAATTAGAAGAGGTAAGATAGTAAAGGCCTTGTGATTCATATCTTGTTCCAATAGTCTGTCCTGTACTGCGGTCCTGCATGACAAAGAAATGATCAAAAAAATTATGCTACAATGTAGGGCTTTCGTCAAACGACTAACCGATGCTAGATTAAAAGGAGAACCAGGGACATAAAGAACAGAGTCAAGAGTGACAGAAGATATGGGTTTGGCTTTTCCAACCCCTTTTGGTTTTGTTTGTATCCCATTGGCTAATGTAATAGATGAAAGAGATTATGAATAGATTATATCAGATAAAAGTGATTTATTACCAGTGATATGATCAGAAGCCCCCGATTCTATGACCCATGATCCAATAGTGTTAGACTGTGATATACTAGTACAAAATATTACCCGCAACAGAAACATTAGGTTTTGCAATCGAAACTACTTGTAGAGACGTTTGTTTATTTGCACAATACGGAAAAAACTCTATATATTCCTTTAGAACAACAGGATCATAACTGGGTGATCCACCATGCAAAATAAAACATATGTCACGAGTGTGTCCAGGTTTATGACATGACTACACTTAGATCGAGATTTTTCAAAAAATTCTCTCCCCCGTCTATTCTCCATGGATTTGTATGTACGCTTGGAACTGCCAGAAGCTGCTACACAAGTCTGAAAATATTGGAAGCTGCCGAAATCTGCCCGCAGTGGCCTGAAAAATTCTGATATTGCCGGAATTTTGCTGGGAACTGCCCAAAAAAAATCACCGGAACCCTAATTTCGGTGATCGGATCTAGAGATAACTGTATGGTTCTTACCGAAAACACTGGACGACCCTAACAGAAGAGAGAAACTCGAAAAAAAGAAGAGAGACCCGAGCAGCACTCACGCGCCGGAAGCTGCCCAAAAATCACCGCAACCCTAATTTCGGTGATCGAATCTAAATAAAAATGGTCAAAAACAGTATAGTCTGGGTCGGAATGGCTGGACGACCCCACCTGTCGAAAAAAATCTCAAAGACTATGGACGGAAAAGTCCTCACGCGCCGGCGAGTGAGCCAGATCTCGCCGGAATCTGCCACCTTCGATCGGCGCGTGAGGGCGCGTGCGGTGCTGTTTTCTGGTGGTTCTTGCTGGGGTTTGGTCGCGGGAGGTTTCCTAGCCTCGTGTTGGTGTTGGTTTTCGCACAACACCCACTAAATAAAAAATGATAAAATCAGTCCCAAACGTCACCGGAAATTGAATTGTTTGTTTCTCACCAATGCCCTGATACCATGAGAGAAATAATGGAGAAAATATTATTGAATTGCGCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGAAAACCTTTTCCAACTAGAATTCCTATTGTAATTCCTATTCTAAGTAAGAAATATTTATTCCTATTCTAACAACCTCTATCCTGGATTTGATCTTCTATTTTGTGTTTGTGGCCCTCATCATGTCAAATTATATTGTTTGTAGTAAAAGAGAAGAATTGTTTGTACGTACTACATGTGTCTATTTCATGTCTATTGAAAGTTATTCCTTTTGATTAATTAAATCAACATTAGTGGCTATCTTAATGTTTATATTCTACAACGACTTGAGCTAGTATTTTTCTTACAGAATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTGGTGAGTTTTTCCTTCTTGGTTGGTTTCAGAATATATCTATCTCTAACTCAATTACCTGAAATATGTTTTTATTTCAATTTCCAGGACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAG</genome_strand>
        <mrna_strand>TGGTATCAGTAATTGACTAGTTACTACACAGTCCGTTTCCCCCTCATTTTTCATCAATTCTGTTTCGTTTTACTTTTTACACGAACAGAAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTG....................................................................................GACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E487611" ref_strand="+" ref_description="SGN-E487611 [cSTE-26-G17]">
      <seq>gtgaagcactttctcattctggatggaggcaggctatggttgatgagatgtctgctttacataagagtggtacttgggagcttgtctcccttcctgcaggtaaatctactgttggttgtcgttgggtttatgctatcaaaattggtccagacggtcaggttgatcgacttaaggctcgccttgttgccaaagggtatactcagatatttgggctagattatagtgacacttttgctcctgtggctaaaattgcatctgttcgtctttttctatctatggttgccgttcgtcattggcctcttcatcagttggacattaagaatgcttttctgcatggttatcttgaggaagaagtctatatggagcaaccacctggttttgttgctcagggggagtctagtagccttgtatgtcgattgcgcaggtcactctatggtctaaaacagtctcctcgagcttggtttgggaagttcagcacagtaattcaggagtttggcatgactcgtagtggagctgatcactctgtgttttatcggcattctgcaccaagtcaatgtatctatttggttgtttatgttgatgatattgttatcaccggtaatgatcaagatggtatcaccgatttgaagcaacatctctttaagcacttccagactaaagaccttggcagattgaagtattttctangtattgaggttgctcagtctagatcaggtattgttatttctcaacgcaagtatgccttagacattcttgaggagacaggaatgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="42978" stop="44352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43278" g_stop="44052" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="775" r_length="775" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E487611" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43278" e_stop="44052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGCACTTTCTCATTCTAGATGGAGGCAGGCTATGGTTGATGAGATGTCTGCTTTACATAAGAGTGATACTTGGGAGCTTGTCTCCCTTCCTGCATGTAAATCTACTGTTGGTTGTCATTGGGTTTATGCAGTCAAAATTGGTCTAGATGGTTAGGTTGATCGACTTAAGGTTCTCCTTGTCGCCAAAGGGTATACTCAGATATTTGGGCTAGATTATAGTGACACTTTTGCTCCTGTGGCTAAAATAGCATATGTTCGTCTTTTTCTAATCTATGGTTGTTGTTCGTCATTGTCCTCTTTATCAGTTGGACATAAAGAATGCTTTTCTGC-TAGTGATCTTGAGGAAGAAGTCTATATGGAGCAACCACCTAGTTTTGTTGCTCAGGGGGAGTCTAGTAGCCTTGTATGTCGATTGCGTAGGTCACTCTATGGTCTGAAACAGTCTCCTCGAGCTTGGTTTGGGAAGTTTAGCACAGTAATTCAGAAGTTTGGCATGACTCGTAATGGATCAAATCACTTTGTGTTTTATCGACATTCTGCACCAGGTCGATGTATCTATTTGGTTGTTTATGTTGATGATATTGTTACCACTGATAATGATCAAGACTATATCACCGATATAAAGCAACATCTTTTTAAGCACTTTCAGACAAAAGACCTTGGTAGATTGAAGTATTTTCTAGGTATTGAGGTTGCTCAATCTAGATCAGGCATTGTTATCTCTAAACACAAGTATGCCTTAGACATTCTTGAGGAGACAGGAATGATGGG</genome_strand>
        <mrna_strand>GTGAAGCACTTTCTCATTCTGGATGGAGGCAGGCTATGGTTGATGAGATGTCTGCTTTACATAAGAGTGGTACTTGGGAGCTTGTCTCCCTTCCTGCAGGTAAATCTACTGTTGGTTGTCGTTGGGTTTATGCTATCAAAATTGGTCCAGACGGTCAGGTTGATCGACTTAAGGCTCGCCTTGTTGCCAAAGGGTATACTCAGATATTTGGGCTAGATTATAGTGACACTTTTGCTCCTGTGGCTAAAATTGCATCTGTTCGTCTTTTTCT-ATCTATGGTTGCCGTTCGTCATTGGCCTCTTCATCAGTTGGACATTAAGAATGCTTTTCTGCATGGTTATCTTGAGGAAGAAGTCTATATGGAGCAACCACCTGGTTTTGTTGCTCAGGGGGAGTCTAGTAGCCTTGTATGTCGATTGCGCAGGTCACTCTATGGTCTAAAACAGTCTCCTCGAGCTTGGTTTGGGAAGTTCAGCACAGTAATTCAGGAGTTTGGCATGACTCGTAGTGGAGCTGATCACTCTGTGTTTTATCGGCATTCTGCACCAAGTCAATGTATCTATTTGGTTGTTTATGTTGATGATATTGTTATCACCGGTAATGATCAAGATGGTATCACCGATTTGAAGCAACATCTCTTTAAGCACTTCCAGACTAAAGACCTTGGCAGATTGAAGTATTTTCTANGTATTGAGGTTGCTCAGTCTAGATCAGGTATTGTTATTTCTCAACGCAAGTATGCCTTAGACATTCTTGAGGAGACAGGAATGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E427595" ref_strand="+" ref_description="SGN-E427595 [STM-48-D14]">
      <seq>gtgaagcactttctcattctggatggaggcaggctatggttgatgagatgtctgctttacataagagtggtacttgggagcttgtctcccttcctgcaggtaaatctactgttggttgtcgttgggtttatgctatcaaaattggtccagacggtcaggttgatcgacttaaggctcgccttgttgccaaagggtatactcagatatttgggctagattatagtgacacttttgctcctgtggctaaaattgcatctgttcgtctttttctatctatggttgccgttcgtcattggcctcttcatcagttggacattaagaatgcttttctgcatggttatcttgaggaagaagtctatatggagcaaccacctggttttgttgctcanggggagtctagtagccttgtatgtcgattgcgcaggtcactctatggtctaaaacagtctcctcgagcttggtttgggaagttcagcacagtaattcaggagtttggcatgactcgtagtggagctgatcactctgtgttttatcggcattctgcaccaagtcaatgtatctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="42978" stop="44142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43278" g_stop="43842" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E427595" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43278" e_stop="43842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGCACTTTCTCATTCTAGATGGAGGCAGGCTATGGTTGATGAGATGTCTGCTTTACATAAGAGTGATACTTGGGAGCTTGTCTCCCTTCCTGCATGTAAATCTACTGTTGGTTGTCATTGGGTTTATGCAGTCAAAATTGGTCTAGATGGTTAGGTTGATCGACTTAAGGTTCTCCTTGTCGCCAAAGGGTATACTCAGATATTTGGGCTAGATTATAGTGACACTTTTGCTCCTGTGGCTAAAATAGCATATGTTCGTCTTTTTCTAATCTATGGTTGTTGTTCGTCATTGTCCTCTTTATCAGTTGGACATAAAGAATGCTTTTCTGC-TAGTGATCTTGAGGAAGAAGTCTATATGGAGCAACCACCTAGTTTTGTTGCTCAGGGGGAGTCTAGTAGCCTTGTATGTCGATTGCGTAGGTCACTCTATGGTCTGAAACAGTCTCCTCGAGCTTGGTTTGGGAAGTTTAGCACAGTAATTCAGAAGTTTGGCATGACTCGTAATGGATCAAATCACTTTGTGTTTTATCGACATTCTGCACCAGGTCGATGTATCTATTT</genome_strand>
        <mrna_strand>GTGAAGCACTTTCTCATTCTGGATGGAGGCAGGCTATGGTTGATGAGATGTCTGCTTTACATAAGAGTGGTACTTGGGAGCTTGTCTCCCTTCCTGCAGGTAAATCTACTGTTGGTTGTCGTTGGGTTTATGCTATCAAAATTGGTCCAGACGGTCAGGTTGATCGACTTAAGGCTCGCCTTGTTGCCAAAGGGTATACTCAGATATTTGGGCTAGATTATAGTGACACTTTTGCTCCTGTGGCTAAAATTGCATCTGTTCGTCTTTTTCT-ATCTATGGTTGCCGTTCGTCATTGGCCTCTTCATCAGTTGGACATTAAGAATGCTTTTCTGCATGGTTATCTTGAGGAAGAAGTCTATATGGAGCAACCACCTGGTTTTGTTGCTCANGGGGAGTCTAGTAGCCTTGTATGTCGATTGCGCAGGTCACTCTATGGTCTAAAACAGTCTCCTCGAGCTTGGTTTGGGAAGTTCAGCACAGTAATTCAGGAGTTTGGCATGACTCGTAGTGGAGCTGATCACTCTGTGTTTTATCGGCATTCTGCACCAAGTCAATGTATCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E744601" ref_strand="+" ref_description="SGN-E744601 [GI|1143809]">
      <seq>gaattcggcacgagatttttggcggctcctcacgcctttgaaatatttccttttgcctccattcttccattctcagtgagcatcaagaaaattagcaatggagcagcagcacaggaatcagaagtcgatgcaagaccaaaatgatgaaatcgaggatgttcaacacggcccttttccagttgaacaacttcaggcatcagggattgcagctctagatgtaaaaaaactcaaggatgctggtctatgtacagttgaatctgttgtttatgctccaagaaaggaacttctgcagataaaaggaattagtgaagctaaagttgacaagattattgaggcagcttcaaaattagtgcctttgggattcactagtgccagccaactccatgcacagaggcttgaaatcatacagataacttctggatcgaaagaacttgacaagatattagaaggaggaatcgaaactggatctattactgaaatttacggagagttccgatgtggaaagactcagctgtgtcacacactatgcgtgacttgtcaacttccattagatcagggaggtggtgaagggaaagcaatgtacattgatgctgagggtactttcagaccacaaagacttttacaaattgcagacaggtatggattgaatggtcctgatgtcctggagaatgtagcctatgctcgagcttataataccgatcatcaatcaagacttttgcttgaggcagcctcaatgatggtggagaccaggtttgctctcatgattgtggacagtgctactgccctttatagaactgacttctctgggagaggagagttgtctgccaggcagatgcatcttgcaaagtttctgagaagccttcagaagttagcagatgagtttggtgttgctgttgttattacgaaccaagttgttgctcaagtggatggttctgctgtatttgctgggcctcaaataaaacccattggtggcaacatcatggcacatgcttctacgacgagactagctctgaggaagggtagggccgaggagcggatttgtaaagtagtcagttcgccatgcttagctgaagcagaagcaagatttcaaatttctgttgaaggagtcactgatgtaaaggactaaatgtgtgatcagcacattgtttactactagtactattttttgtttcctacttggtgtacgattttgtcatcgttttgaaggttagttaaccataaaaagaagtatgctatatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="59572" stop="55423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59270" g_stop="59091" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="193" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59090" i_stop="57812" i_length="1279">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.021" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57811" g_stop="57667" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="338" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57666" i_stop="57537" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57536" g_stop="57426" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="449" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57425" i_stop="57342" i_length="84">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.172" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57341" g_stop="57250" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="541" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57249" i_stop="57159" i_length="91">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57158" g_stop="57064" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="636" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57063" i_stop="56980" i_length="84">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56979" g_stop="56866" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="750" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56865" i_stop="56444" i_length="422">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="56443" g_stop="56314" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="880" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="56313" i_stop="56163" i_length="151">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="56162" g_stop="56041" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="881" r_stop="1002" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="56040" i_stop="55960" i_length="81">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="55959" g_stop="55721" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1003" r_stop="1241" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E744601" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1228</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59270" e_stop="59091"/>
          <exon e_start="57811" e_stop="57667"/>
          <exon e_start="57536" e_stop="57426"/>
          <exon e_start="57341" e_stop="57250"/>
          <exon e_start="57158" e_stop="57064"/>
          <exon e_start="56979" e_stop="56866"/>
          <exon e_start="56443" e_stop="56314"/>
          <exon e_start="56162" e_stop="56041"/>
          <exon e_start="55959" e_stop="55721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTGGCGGCTCCTCACGCCTTTGAAATATTTCCTTTTGCCTCCATTCTTCCATTCTCAGTGAGCATCAAGAAAATTAGCAATGGAGCAGCAGCACAGGAATCAGAAGTCGATGCAAGACCAAAATGATGAAATCGAGGATGTTCAACACGGCCCTTTTCCAGTTGAACAACTTCAGGTTTCCCCCCTTTTCTTCTCTTAATTGAGGAGTTAATTCAATCCTTTTTATATATCAAGTGTCCTAAATCTTGGATTGGGGTAGTTGTTTTGGTGATAGTGATTGTTTATGATTTCAGATTCAGTGTAGCTGGGTCTGATCTTGAATCTTGAATTGTACTTCGTAGGTTAAATGTTGAATCTTGAAATGTGGTTCTGGGTTGAATCTTGAATGGTAAAAAACTGAATTTTGTGAAACAGCTTTTTTTCAAGGTTGAATCTCATCTGCCTCGCTTATGGGAAATGCTTTTTTTTGTTTTGGGGTTTTCTATACTGTCCCCTTTTTGGCTTCTTGGAATGGGTTCGCTATCATAGTGCTCTTGTGGATTATTTCAAGCTAATATTTTTACAGTTATATCTATCTGTCCTTTACTGCCTTAGTTTTGAAGCTAAATGTTGTAGAATGCTTTGTGAAATGGGTTCTCGAAGCGATACCACTGATCTTGAAAACCTGGATGAGTGTTTTTTTGGTATGATGTTTCGATGGAGTCATGGAGCCCTGCGACAAGCCTAAGTTTAGTATTTAAGTGGAGAATGGTAGAGGAGTGACCCATCATTCCTGAGTTCGAATGCTATTGTTGGCAATAAGGGTTGGCTCAAAACAAATTTCTAGGTCATCAATTAAAAAAAACGATGTTGCTACAATGGTTTTGCTGCCCGTAATTACAACCAGTTTTCATTAGAAATTTGTAGGTTACTATCAGAGTGTACAGAATTGAGGGCACCATGAAAAGCTGCTTCTAGAAAGGCACTTGACACAAAATGATTTACATCATGACGCATGATATGGAGGGTCCAATAGGTGGGCGTTGATGGTCAGATATTTTAGTGTGCATCTGGGTTATGCGGTTGGCTTATCAGCTTTGCTCCTTACAAGATTTTATCAGTTTAGATCTTTTTTTGAAGAATTTTAAGTCTCGAGTGATTAACATTTACAGTAACTCAGATAAGTACTTATCATAAGTTTCTCATACTGCAGATTTTAAAAAGATTTACACGAAGTGAAACCTAAACTCTTGAGGATTTTTTAATCTTACTGGTAGTACATAAAAGCTGGACTAGGCATTTCCTAGATTTTTTTCTTGGAATTGTTAATATTTAAGAGGCAATATCTTTGAGTATCTTTTTCCAGTCTAGCTTGTAGTATAGTTGTTTCTGTTGAATGACACCCTGTAATTCTTCCAACTTTTAAAGGAAATGGTCCATTAGTTACTGAGGCATATAGCTTTTTTGTCCTCAAGGCATCAGGGATTGCAGCTCTAGATGTAAAAAAACTCAAGGATGCTGGTCTATGTACAGTTGAATCTGTTGTTTATGCTCCAAGAAAGGAACTTCTGCAGATAAAAGGAATTAGTGAAGCTAAAGTTGACAAGATTATTGAGGCAGGCATGTCTCTCTTCATTTAACTGCCATTGCCAGTGCTGATGTTTTTTCCCCTTACCTTCTTTTTTCACCCATTTCTGCAATTTTTTATCAGCAATCGGTACTAAATCTTTTTAATGCTGCATATGAACAGCTTCAAAATTAGTGCCTTTGGGATTCACTAGTGCCAGCCAACTCCATGCACAGAGGCTTGAAATCATACAGATAACTTCTGGATCGAAAGAACTTGACAAGATATTAGAAGGTAGTTATTTATCTAATTTGTGAACTTCTAGAACCGGAATTTGACCTGGCATCACAACCTCATACTTTTTTTGTCACTTGTCAGGAGGAATCGAAACTGGATCTATTACTGAAATTTACGGAGAGTTCCGATGTGGAAAGACTCAGCTGTGTCACACACTATGCGTGACTTGTCAAGTACGATAACATAGACATTTTTTTAATTTTAAAATCCCATAATAAAGTGCACAAGATTCATTCAAATATCATTCTTTATCTGTTATTTCAGCTTCCATTAGATCAGGGAGGTGGTGAAGGGAAAGCAATGTACATTGATGCTGAGGGTACTTTCAGACCACAAAGACTTTTACAAATTGCAGACAGGTCTTCTACTAGTAACTCAACTCACATGTTTTTCTGGTATTATGAAGTTCAAACTGTTGTCATCAGTGGGGTTAAATGCTGCAGGTATGGATTGAATGGTCCTGATGTCCTGGAGAATGTAGCCTATGCTCGAGCTTATAATACCGATCATCAATCAAGACTTTTGCTTGAGGCAGCCTCAATGATGGTGGAGACCAGGTTAACTTTCTCCATATTCCACTGCTCATTTATGAAAAAAATTTCTCATGCTTCTCAGTGGCTGTGATACTTTGAGCAAGAAAATGTGCTTAGATTATATCTTTTAGAGAATATTCCAACTCTTGATTGAGTATGTTGAAGGGTTCTAGTTTGAAGCAGCTCTCAATTTGTTTGATTATGGATGTCCATCTTACATCTAATGCATGTTTGGATACATCTTGGATCTGTTTGAAGTGTGCTCTCACCTGTTTCAAACAAATAAATCTTTTTGAAGTGTTCTAGAATTCAAAAAAAAATTTGCTTCCTGAATATAGTGAAAATCTTGAATTTGTGGCTTCCTTAGTTATTTGGGTTCATCTCATCAAAGCATAAAAAAGATCTCTGATAGAAGCTTAACTTTGAAAACTGTTTTGATCAAGCAGGTTTGCTCTCATGATTGTGGACAGTGCTACTGCCCTTTATAGAACTGACTTCTCTGGGAGAGGAGAGTTGTCTGCCAGGCAGATGCATCTTGCAAAGTTTCTGAGAAGCCTTCAGAAGTTAGCAGATGAGGTATTTAGCATGTCCCTCATTTGTGCATATTATCCAAAATGGAGTCTCCTCCTTCCTATTTTTCTCTCTTTGGTGGTGGTTAATGTTTTAGAATTAGATTAGGGGTTCTTGACTTACTTTTTCTATCTATCCTTTACTTTTACACTTGCAGTTTGGTGTTGCTGTTGTTATTACGAACCAAGTTGTTGCTCAAGTGGATGGTTCTGCTGTATTTGCTGGGCCTCAAATAAAACCCATTGGTGGCAACATCATGGCACATGCTTCTACGACGAGGTACGCATAATAGTACAACTATAACTTGCAGGCGCAGCTTATCTTGATAGCTGATATTTTACTCTCTTCAAATTCTGACAGACTAGCTCTGAGGAAGGGTAGGGCCGAGGAGCGGATTTGTAAAGTAGTCAGTTCGCCATGCTTAGCTGAAGCAGAAGCAAGATTTCAAATTTCTGTTGAAGGAGTCACTGATGTAAAGGACTAAATGTGTGATCAGCACATTGTTTACTACTAGTACTATTTTTTGTTTCCTACTTGGTGTACGATTTTGTCATCGTTTTGAAGGTTAGTTAACCATAAAAAGAAGTATGCTATATGAA</genome_strand>
        <mrna_strand>GATTTTTGGCGGCTCCTCACGCCTTTGAAATATTTCCTTTTGCCTCCATTCTTCCATTCTCAGTGAGCATCAAGAAAATTAGCAATGGAGCAGCAGCACAGGAATCAGAAGTCGATGCAAGACCAAAATGATGAAATCGAGGATGTTCAACACGGCCCTTTTCCAGTTGAACAACTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAGGGATTGCAGCTCTAGATGTAAAAAAACTCAAGGATGCTGGTCTATGTACAGTTGAATCTGTTGTTTATGCTCCAAGAAAGGAACTTCTGCAGATAAAAGGAATTAGTGAAGCTAAAGTTGACAAGATTATTGAGGCAG..................................................................................................................................CTTCAAAATTAGTGCCTTTGGGATTCACTAGTGCCAGCCAACTCCATGCACAGAGGCTTGAAATCATACAGATAACTTCTGGATCGAAAGAACTTGACAAGATATTAGAAG....................................................................................GAGGAATCGAAACTGGATCTATTACTGAAATTTACGGAGAGTTCCGATGTGGAAAGACTCAGCTGTGTCACACACTATGCGTGACTTGTCAA...........................................................................................CTTCCATTAGATCAGGGAGGTGGTGAAGGGAAAGCAATGTACATTGATGCTGAGGGTACTTTCAGACCACAAAGACTTTTACAAATTGCAGACAG....................................................................................GTATGGATTGAATGGTCCTGATGTCCTGGAGAATGTAGCCTATGCTCGAGCTTATAATACCGATCATCAATCAAGACTTTTGCTTGAGGCAGCCTCAATGATGGTGGAGACCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCTCTCATGATTGTGGACAGTGCTACTGCCCTTTATAGAACTGACTTCTCTGGGAGAGGAGAGTTGTCTGCCAGGCAGATGCATCTTGCAAAGTTTCTGAGAAGCCTTCAGAAGTTAGCAGATGAG.......................................................................................................................................................TTTGGTGTTGCTGTTGTTATTACGAACCAAGTTGTTGCTCAAGTGGATGGTTCTGCTGTATTTGCTGGGCCTCAAATAAAACCCATTGGTGGCAACATCATGGCACATGCTTCTACGACGAG.................................................................................ACTAGCTCTGAGGAAGGGTAGGGCCGAGGAGCGGATTTGTAAAGTAGTCAGTTCGCCATGCTTAGCTGAAGCAGAAGCAAGATTTCAAATTTCTGTTGAAGGAGTCACTGATGTAAAGGACTAAATGTGTGATCAGCACATTGTTTACTACTAGTACTATTTTTTGTTTCCTACTTGGTGTACGATTTTGTCATCGTTTTGAAGGTTAGTTAACCATAAAAAGAAGTATGCTATATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E315132" ref_strand="+" ref_description="SGN-E315132 [cTOA-24-E14]">
      <seq>cctttgaaatatttccttttgcctccattcttccattctcagtgagcatcaagaaaattagcaatggagcagcagcacaggaatcagaagtcgatgcaagaccaaaatgatgaaatcgaggatgttcaacacggcccttttccagttgaacaacttcaggcatcagggattgcagctctagatgtaaaaaaactcaaggatgctggtctatgtacagttgaatctgttgtttatgctccaagaaaggaacttctgcagataaaaggaattagtgaagctaaagttgacaagattattgaggcagcttcaaaattagtgcctttgggattcactagtgccagccaactccatgcacagaggcttgaaatcatacagataacttctggatcgaaagaacttgacaagatattagaaggaggaatcgaaactggatctattactgaaatttacggagagttccgatgtggaaagactcagctgtggcacacactatgcgtgacttgtcaacttccattagatcagggaggtggtgaagggaaagcaatgtacattgatgctganggtactttcagaccacaaagacttttacaaattgcagacaggtatggattgaatggtcctgatgtcctggagaatgtagcctatgctcgagcttataataccgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="59549" stop="56615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59249" g_stop="59091" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59090" i_stop="57812" i_length="1279">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.021" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57811" g_stop="57667" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="304" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57666" i_stop="57537" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57536" g_stop="57426" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="415" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57425" i_stop="57342" i_length="84">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.172" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57341" g_stop="57250" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="507" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57249" i_stop="57159" i_length="91">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57158" g_stop="57064" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="602" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57063" i_stop="56980" i_length="84">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56979" g_stop="56915" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="667" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E315132" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59249" e_stop="59091"/>
          <exon e_start="57811" e_stop="57667"/>
          <exon e_start="57536" e_stop="57426"/>
          <exon e_start="57341" e_stop="57250"/>
          <exon e_start="57158" e_stop="57064"/>
          <exon e_start="56979" e_stop="56915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGAAATATTTCCTTTTGCCTCCATTCTTCCATTCTCAGTGAGCATCAAGAAAATTAGCAATGGAGCAGCAGCACAGGAATCAGAAGTCGATGCAAGACCAAAATGATGAAATCGAGGATGTTCAACACGGCCCTTTTCCAGTTGAACAACTTCAGGTTTCCCCCCTTTTCTTCTCTTAATTGAGGAGTTAATTCAATCCTTTTTATATATCAAGTGTCCTAAATCTTGGATTGGGGTAGTTGTTTTGGTGATAGTGATTGTTTATGATTTCAGATTCAGTGTAGCTGGGTCTGATCTTGAATCTTGAATTGTACTTCGTAGGTTAAATGTTGAATCTTGAAATGTGGTTCTGGGTTGAATCTTGAATGGTAAAAAACTGAATTTTGTGAAACAGCTTTTTTTCAAGGTTGAATCTCATCTGCCTCGCTTATGGGAAATGCTTTTTTTTGTTTTGGGGTTTTCTATACTGTCCCCTTTTTGGCTTCTTGGAATGGGTTCGCTATCATAGTGCTCTTGTGGATTATTTCAAGCTAATATTTTTACAGTTATATCTATCTGTCCTTTACTGCCTTAGTTTTGAAGCTAAATGTTGTAGAATGCTTTGTGAAATGGGTTCTCGAAGCGATACCACTGATCTTGAAAACCTGGATGAGTGTTTTTTTGGTATGATGTTTCGATGGAGTCATGGAGCCCTGCGACAAGCCTAAGTTTAGTATTTAAGTGGAGAATGGTAGAGGAGTGACCCATCATTCCTGAGTTCGAATGCTATTGTTGGCAATAAGGGTTGGCTCAAAACAAATTTCTAGGTCATCAATTAAAAAAAACGATGTTGCTACAATGGTTTTGCTGCCCGTAATTACAACCAGTTTTCATTAGAAATTTGTAGGTTACTATCAGAGTGTACAGAATTGAGGGCACCATGAAAAGCTGCTTCTAGAAAGGCACTTGACACAAAATGATTTACATCATGACGCATGATATGGAGGGTCCAATAGGTGGGCGTTGATGGTCAGATATTTTAGTGTGCATCTGGGTTATGCGGTTGGCTTATCAGCTTTGCTCCTTACAAGATTTTATCAGTTTAGATCTTTTTTTGAAGAATTTTAAGTCTCGAGTGATTAACATTTACAGTAACTCAGATAAGTACTTATCATAAGTTTCTCATACTGCAGATTTTAAAAAGATTTACACGAAGTGAAACCTAAACTCTTGAGGATTTTTTAATCTTACTGGTAGTACATAAAAGCTGGACTAGGCATTTCCTAGATTTTTTTCTTGGAATTGTTAATATTTAAGAGGCAATATCTTTGAGTATCTTTTTCCAGTCTAGCTTGTAGTATAGTTGTTTCTGTTGAATGACACCCTGTAATTCTTCCAACTTTTAAAGGAAATGGTCCATTAGTTACTGAGGCATATAGCTTTTTTGTCCTCAAGGCATCAGGGATTGCAGCTCTAGATGTAAAAAAACTCAAGGATGCTGGTCTATGTACAGTTGAATCTGTTGTTTATGCTCCAAGAAAGGAACTTCTGCAGATAAAAGGAATTAGTGAAGCTAAAGTTGACAAGATTATTGAGGCAGGCATGTCTCTCTTCATTTAACTGCCATTGCCAGTGCTGATGTTTTTTCCCCTTACCTTCTTTTTTCACCCATTTCTGCAATTTTTTATCAGCAATCGGTACTAAATCTTTTTAATGCTGCATATGAACAGCTTCAAAATTAGTGCCTTTGGGATTCACTAGTGCCAGCCAACTCCATGCACAGAGGCTTGAAATCATACAGATAACTTCTGGATCGAAAGAACTTGACAAGATATTAGAAGGTAGTTATTTATCTAATTTGTGAACTTCTAGAACCGGAATTTGACCTGGCATCACAACCTCATACTTTTTTTGTCACTTGTCAGGAGGAATCGAAACTGGATCTATTACTGAAATTTACGGAGAGTTCCGATGTGGAAAGACTCAGCTGTGTCACACACTATGCGTGACTTGTCAAGTACGATAACATAGACATTTTTTTAATTTTAAAATCCCATAATAAAGTGCACAAGATTCATTCAAATATCATTCTTTATCTGTTATTTCAGCTTCCATTAGATCAGGGAGGTGGTGAAGGGAAAGCAATGTACATTGATGCTGAGGGTACTTTCAGACCACAAAGACTTTTACAAATTGCAGACAGGTCTTCTACTAGTAACTCAACTCACATGTTTTTCTGGTATTATGAAGTTCAAACTGTTGTCATCAGTGGGGTTAAATGCTGCAGGTATGGATTGAATGGTCCTGATGTCCTGGAGAATGTAGCCTATGCTCGAGCTTATAATACCGATC</genome_strand>
        <mrna_strand>CCTTTGAAATATTTCCTTTTGCCTCCATTCTTCCATTCTCAGTGAGCATCAAGAAAATTAGCAATGGAGCAGCAGCACAGGAATCAGAAGTCGATGCAAGACCAAAATGATGAAATCGAGGATGTTCAACACGGCCCTTTTCCAGTTGAACAACTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAGGGATTGCAGCTCTAGATGTAAAAAAACTCAAGGATGCTGGTCTATGTACAGTTGAATCTGTTGTTTATGCTCCAAGAAAGGAACTTCTGCAGATAAAAGGAATTAGTGAAGCTAAAGTTGACAAGATTATTGAGGCAG..................................................................................................................................CTTCAAAATTAGTGCCTTTGGGATTCACTAGTGCCAGCCAACTCCATGCACAGAGGCTTGAAATCATACAGATAACTTCTGGATCGAAAGAACTTGACAAGATATTAGAAG....................................................................................GAGGAATCGAAACTGGATCTATTACTGAAATTTACGGAGAGTTCCGATGTGGAAAGACTCAGCTGTGGCACACACTATGCGTGACTTGTCAA...........................................................................................CTTCCATTAGATCAGGGAGGTGGTGAAGGGAAAGCAATGTACATTGATGCTGANGGTACTTTCAGACCACAAAGACTTTTACAAATTGCAGACAG....................................................................................GTATGGATTGAATGGTCCTGATGTCCTGGAGAATGTAGCCTATGCTCGAGCTTATAATACCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E261046" ref_strand="+" ref_description="SGN-E261046 [cLEG-55-B6]">
      <seq>tccaatggaaataatggtattgaatacaaatgtaacaagatcaatgcagtgcaacattgaatggaatggtgatgttggatttgaaatgttagaaggggtatacaagcatactgtgaacttgggtcaacaaaaatgtagttgaagatcatgggaattaaaaggtatcccatgtgcacatggtatagcagcaatgaactacttgaacatggatgcatcacaagcaatatctagttcgtatagaaaagacacaaatatgaagacatattctcatttcattcaaccagtcccaaacatggaaatgtggcctgaaagtagaaacccaatggttaaaccacctaaggcaagacaaatgcctggtaggtcaccaaagaatagaagaagagaaattggtgaagtgagaaaagctggaaagttgccaagaatggggacactaatgacatattcactttgcaaaggaccaaatcataacaagagaaattgtccaaaaaatcctaaacctatgtctacaccaacacccactcaagagtccaccactggaaaaaaagtggtagaggttattatgaaagaacaagcactagtaagacaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="69383" stop="70660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69683" g_stop="70208" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70209" i_stop="70297" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70298" g_stop="70360" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="588" r_length="62" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E261046" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69683" e_stop="70208"/>
          <exon e_start="70298" e_stop="70360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATGGCAATGATGGTATTCAATACAAATGTAACAAGATCAATGCAGTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAGTGTTAGAAGTGGTATACAAGCATACTGTGAACTTGGGTCAACAAAAATGTAATTGCAGATCATGGGAATTAAAAGGTATCCCATGTGCACATGGTATAGCAACAATCAACCACTTGAACATAGATGCATCACAAGCAATATCTAGTTGGTATAGAAAAGACACATATATGAAGACATATTCTTATTTCACTCAACCAGTCCCAAACATGGAAATGTGGCTTGAAAGTAGAAACCTAATGGTTGAACCACCTGAGGCAAGATAAATGCCTGGTAGGCCACCAAAGAACAGAAGAAGAGAAATTGGTGAAGTGAGAAAAGTTGGAAAGTTGCCAAGAATGGGGACAGTAATGACATGTTCACTTTGTAAAGGACCAAATCATAACAAGAGAAATTGTCCAAAAAATCCTAAACCTAAGTCTACACCAACACCCACTCAAGAGGTACATTCATATTAATTTGCTTTTAGAAATTATGTTAGATTACTTATTAAATTTAATGTCTTGTTGTGTTCTTTTTCCAATCATATTAGTCCACCATTGGAAAAAAGAGGGGTAGAGGTCATTATGAAAGAACAAGCACCAGTAAGACTGGT</genome_strand>
        <mrna_strand>TCCAATGGAAATAATGGTATTGAATACAAATGTAACAAGATCAATGCAGTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAATGTTAGAAGGGGTATACAAGCATACTGTGAACTTGGGTCAACAAAAATGTAGTTGAAGATCATGGGAATTAAAAGGTATCCCATGTGCACATGGTATAGCAGCAATGAACTACTTGAACATGGATGCATCACAAGCAATATCTAGTTCGTATAGAAAAGACACAAATATGAAGACATATTCTCATTTCATTCAACCAGTCCCAAACATGGAAATGTGGCCTGAAAGTAGAAACCCAATGGTTAAACCACCTAAGGCAAGACAAATGCCTGGTAGGTCACCAAAGAATAGAAGAAGAGAAATTGGTGAAGTGAGAAAAGCTGGAAAGTTGCCAAGAATGGGGACACTAATGACATATTCACTTTGCAAAGGACCAAATCATAACAAGAGAAATTGTCCAAAAAATCCTAAACCTATGTCTACACCAACACCCACTCAAGAG.........................................................................................TCCACCACTGGAAAAAA-AGTGGTAGAGGTTATTATGAAAGAACAAGCACTAGTAAGACAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E369112" ref_strand="+" ref_description="SGN-E369112 [TUS-23-I16]">
      <seq>tagggtcactacagcaagattatccttcctcaccttccgaccaactgattattgtagtatgcctttcaacacgctgtgtttggaaaggaactgtttgtgagccacctcatatttctcgaataaaattttatgggattaccgatatgcctttgggacggtttttacgagaccggttgtttgatgagaattttaggtgtccctcatgtgaaatgcctccagaagcacatgttcgttgctatactcatcggcaaggcagcctcacaatttctgtaaagaagctacctgaatgtatcttgccaggagaacaggaaggaaagatatggatgtggcacagatgtctgcgatgtcctcgggacaatggtttccctcctccaaccaggagggtagtaatgtctaatgctgcttgggggttgtcatttgggaaatttttggaactcagtttttcaaatcatgcagcagcgagcagggttgcaagttgtggtcatcttctttaccgggactgtctccggttctatgggtttgggaaaatggtagcttgttttcgatattctcctgttcatgtttattctgtctttcttccaccttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="92594" stop="96591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92894" g_stop="93078" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93079" i_stop="93177" i_length="99">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93178" g_stop="93509" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="517" r_length="332" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93510" i_stop="96218" i_length="2709">
            <donor d_prob="0.569" d_score="0.98"/>
            <acceptor a_prob="0.915" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96219" g_stop="96291" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="590" r_length="73" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E369112" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92894" e_stop="93078"/>
          <exon e_start="93178" e_stop="93509"/>
          <exon e_start="96219" e_stop="96291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGTCACTACAGCAAGATTATCCTTCCTCACCTTCCGACCAACTGATTATTGTAGTATGCCTTTCAACACGCTGTGTTTGGAAAGGAACTGTTTGTGAGCCACCTCATATTTCTCGAATAAAATTTTATGGGATTACCGATATGCCTTTGGGACGGTTTTTACGAGACCGGTTGTTTGATGAGGTAATGTCTCTCTTCCTCTTTTAAAGTTGCAGTGGATATATTCTATGCATGCATGGTTTATTCTTGTCTTTTTTCTGATATATGTAATACATTCACCAGAATTTTAGGTGTCCCTCATGTGAAATGCCTCCAGAAGCACATGTTCGTTGCTATACTCATCGGCAAGGCAGCCTCACAATTTCTGTAAAGAAGCTACCTGAATGTATCTTGCCAGGAGAACAGGAAGGAAAGATATGGATGTGGCACAGATGTCTGCGATGTCCTCGGGACAATGGTTTCCCTCCTCCAACCAGGAGGGTAGTAATGTCTAATGCTGCTTGGGGGTTGTCATTTGGGAAATTTTTGGAACTCAGTTTTTCAAATCATGCAGCAGCGAGCAGGGTTGCAAGTTGTGGTCATCTTCTTCACCGGGACTGTCTCCGGTTCTATGGGTATGCTGTTTCCAGTAAGGCATTTGTACGCATCATCTTTCTACACTGGGATTGCAATGCTTTCACCTATTTGGATGAGTGCTCTTTTTCTTTAATCAGCTACCTAATATCATGTAAAGTATGTAGAGAGACAGAAACCCGTTGCATTAGTAAAATTATCATAAAAGCCTCAGACGCATTTCCTGTATAATGGTTAAAGTTGGTATCAGCAAGCAAGTACGTTATTTCAAATAGACAGTTTCACATAAACTTGTGGAAACATTACCTTCTAAGTTGTTAAAGTAGGCGCCTAACCCCACTTCATGTGAAAATTTTCTAACTTGAATTGACTAATATAGACTTGCTGATAACAGCTACTAATGACAAACTCCTCAGTGACATTAGGTCATAGGTTGGATCATTTTGTTTACCAGTGTTTTGTCTGGTTGAGCCGTTGAGGTTCTTAATATTGCATGGATCCTCAGCTTTTAGTTGTTTGCATGAATACTATGATGATGTTGCTCATCAGCATGTATCAACTATCCTGACTGTTTTATATTAAGATTTACTGAACGCTCCAAGGCAGGTCTCCCAAAAACTCTCTCCCCTACTTCTTAGGAGTGTAAAACGTCTTTTCCAGTGGTTTTCAACTGGGAAAACCTTTCTTTTTCTTCTAATCTTAAGTCATCACCTTCTGTGATAGCTTTCAACCTTTTCTTTCTTCATTTTCAGAGATGGGGGATAATATTATTTACTTTAATGCTGGTTTTAAATCCTCCGACATTACTAGATGGACTGCTGGAACACCATTTGTTTTGTATGGGTGAAGAGAAGCTGTTATAATGAGAAGTCCTGCATTAGCAGTAAGATCATGGAATGAATATGCTCTGTCCTTAAAGAGTCCTTGACAGATCAGAAGAATGTGGTAAGGAGATGGAAAACCATAGACCAGGGCCCAGAACATTTTTTGCACCAGAAAATCTAACGAACGAGGGAGATATATGAATATCTTATCCTTAAATGGTGGTGGGAGATCTGTCATTAGTATCCCGGAAACAGTTTATAATGCTGGTTGGTGTGATATTGCATTTAAGGTAGAAAGATTTATTAAATGATCTCCAAAGTTGGATGAAGTGGAGGCTTGGCCCTCTTGAGTCTTGTGTGTTTAGAAGGTACCACCTAAACTTAAAGGCAAGTTTTAAGAAGAAGTGGTTAGACTGGCGTTATTGTATGGGCAGAGTGTTGGCCAGTCTAGAACTCCGATGTATTGAAGATGCAAGTCTCGGGAATGAGGTTTGAGATGGGTGTTGGGCACACTAGGAGAGATAAAATTAGAAATGAGGTTACTTCTTGACAAGGTGGGAGTGGCCTCTATGGTGGACAAGATGCGAAGCAAGACCAAGATGGTGAGGAGATGTGTAGATGCCCAATGAAAAGGTGTAAGAGGTTGGTCATAGTGAGTATGAGGAGAGAGAGGTAGACCGAAAAATTATTGGGGAGAGGTGATTAGACGGGACATGGTGCAACTCCAGATTACCGAGGATGACCTTAGATAGGAGGGTGTGAAGGTCGGGTACAGAAGGCTAGTAGGTATGGAGTGTCGTCTTTTTTTTGAGGTGTTTAGCCGTTTTCTTATAGCGTCTTGCTTTTGATTCCACCATCACTTGTTGATTGTGTTTAGGTTATCCCATTATTTTGTGGTTGTTACTGTTTTCTTATTAGTTGCTTTGTTTCTCCACTGTTGTTTTCCCTTTTTCATTATTCGGATATGTTCTACTCGAGCCGAGGGTCCTTCAGGAACAGTATTCTTACCTCCATTAGGTAGGGTTATGGTCTGGGTACACTCTATTCTCCCCAGACACCACTTGTGGGATTTCACTGTGTGGTGTTATTGTTAGGTTCTACATAGAGGTAGATCAGTTTTGTTTCTCGAGTACACTTGTAAAATGTGGTTTCAGTACCGCCCATGTGCTGTTTTCCCCACTTTTATATGTTTTTATATATTGGGTTTACTGATTTATTTTTGCTTGTTCCAAATGTTTCTGTGACCTAGAATTTACAATTTGAACTTCTTGTATTGCTCTATGGGAGAGCTTGTGATGCTACTTCTTATTGCGGTCTGTTGACTACATCATTTTATCAGTATAGATATGGAGTCCCTGCTAGGAAAAGGGAACTTCTGTTAATAAGAGAGAACACTACAACAAGAGAATGCTTCCAGAAATCTTGACAAAATGGATAAGTTGCATCACATCGTATAAAAGGCTTATAAGTTGCATCACATAGTGGAAAGGCTTAGAGAAACTGGATATTTTCCTATCGCTTGAACCCTTTCACTGGAGAACTCAAGGGGGAAAAATTCTTCAACATAGTCACTAGAAGGTGGTCTACGACCATTAGATCCCTAGAAAGAGGAGTAACTAAGAAGAGAGAGATATAAAAGAAGGAAAGGAATATCAGGAAAATCTTACAGGTGTATGGTTTTCTTGTCATTTTTGTTACTGTTCCATTTCTAGTTTTTTAATGGTGACTTCCCCATATTCTGGGTTAATAGTCTCAGTCGGTGTTGTGTTATCTTGTGCTCGATTCTGGTTATGGTGCATGTGTAGCAGGTGTTCCGTTCTAATCTTTCTTAGATTTATTCATTTGATGGTCCCACAAAGTATTTATTTCCCTTTCTTGTTGCTGAAACAATGCTTTTCTGCACCTCATCTTTGGTTGTTGCCACAGGTTTGGGAAAATGGTAGCTTGTTTTCGATATGCTCCTGTTCATGTTTATTCTGTCTTTCTCCCACCTCCAAAA</genome_strand>
        <mrna_strand>TAGGGTCACTACAGCAAGATTATCCTTCCTCACCTTCCGACCAACTGATTATTGTAGTATGCCTTTCAACACGCTGTGTTTGGAAAGGAACTGTTTGTGAGCCACCTCATATTTCTCGAATAAAATTTTATGGGATTACCGATATGCCTTTGGGACGGTTTTTACGAGACCGGTTGTTTGATGAG...................................................................................................AATTTTAGGTGTCCCTCATGTGAAATGCCTCCAGAAGCACATGTTCGTTGCTATACTCATCGGCAAGGCAGCCTCACAATTTCTGTAAAGAAGCTACCTGAATGTATCTTGCCAGGAGAACAGGAAGGAAAGATATGGATGTGGCACAGATGTCTGCGATGTCCTCGGGACAATGGTTTCCCTCCTCCAACCAGGAGGGTAGTAATGTCTAATGCTGCTTGGGGGTTGTCATTTGGGAAATTTTTGGAACTCAGTTTTTCAAATCATGCAGCAGCGAGCAGGGTTGCAAGTTGTGGTCATCTTCTTTACCGGGACTGTCTCCGGTTCTATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGGAAAATGGTAGCTTGTTTTCGATATTCTCCTGTTCATGTTTATTCTGTCTTTCTTCCACCTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E246289" ref_strand="+" ref_description="SGN-E246289 [cLEF-40-B19]">
      <seq>tagggtcactacagcaagattatccttcctcaccttccgaccaactgattattgtagtatgcctttcaacacgctgtgtttggaaaggaactgtttgtgagccacctcatatttctcgaataaaattttatgggattaccgatatgcctttgggacggtttttacgagaccggttgtttgatgagaattttaggtgtccctcatgtgaaatgcctccagaagcacatgttcgttgctatactcatcggcaaggcagcctcacaatttctgtaaagaagctacctgaatgtatcttgccaggagaacaggaaggaaagatatggatgtggcacagatgtctgcgatgtcctcgggacaatggtttccctcctccaaccaggagggtagtaatgtctaatgctgcttgggggttgtcatttgggaaatttttggaactcagtttttcaaatcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="92594" stop="93746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92894" g_stop="93078" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93079" i_stop="93177" i_length="99">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93178" g_stop="93446" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="454" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E246289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92894" e_stop="93078"/>
          <exon e_start="93178" e_stop="93446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGTCACTACAGCAAGATTATCCTTCCTCACCTTCCGACCAACTGATTATTGTAGTATGCCTTTCAACACGCTGTGTTTGGAAAGGAACTGTTTGTGAGCCACCTCATATTTCTCGAATAAAATTTTATGGGATTACCGATATGCCTTTGGGACGGTTTTTACGAGACCGGTTGTTTGATGAGGTAATGTCTCTCTTCCTCTTTTAAAGTTGCAGTGGATATATTCTATGCATGCATGGTTTATTCTTGTCTTTTTTCTGATATATGTAATACATTCACCAGAATTTTAGGTGTCCCTCATGTGAAATGCCTCCAGAAGCACATGTTCGTTGCTATACTCATCGGCAAGGCAGCCTCACAATTTCTGTAAAGAAGCTACCTGAATGTATCTTGCCAGGAGAACAGGAAGGAAAGATATGGATGTGGCACAGATGTCTGCGATGTCCTCGGGACAATGGTTTCCCTCCTCCAACCAGGAGGGTAGTAATGTCTAATGCTGCTTGGGGGTTGTCATTTGGGAAATTTTTGGAACTCAGTTTTTCAAATCATGC</genome_strand>
        <mrna_strand>TAGGGTCACTACAGCAAGATTATCCTTCCTCACCTTCCGACCAACTGATTATTGTAGTATGCCTTTCAACACGCTGTGTTTGGAAAGGAACTGTTTGTGAGCCACCTCATATTTCTCGAATAAAATTTTATGGGATTACCGATATGCCTTTGGGACGGTTTTTACGAGACCGGTTGTTTGATGAG...................................................................................................AATTTTAGGTGTCCCTCATGTGAAATGCCTCCAGAAGCACATGTTCGTTGCTATACTCATCGGCAAGGCAGCCTCACAATTTCTGTAAAGAAGCTACCTGAATGTATCTTGCCAGGAGAACAGGAAGGAAAGATATGGATGTGGCACAGATGTCTGCGATGTCCTCGGGACAATGGTTTCCCTCCTCCAACCAGGAGGGTAGTAATGTCTAATGCTGCTTGGGGGTTGTCATTTGGGAAATTTTTGGAACTCAGTTTTTCAAATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E703519" ref_strand="+" ref_description="SGN-E703519 [FA21CH10]">
      <seq>gtcctcgggacaatggtttccctcctccaaccaggagggtagtaatgtctaatgctgcttgggggttgtcatttgggaaatttttggaactcagtttttcaaatcatgcagcagcgagcagggttgcaagttgtggtcatcttcttcaccgggactgtctccggttctatgggtttgggaaaatggtagcttgttttcgatatgctcctgttcatgtttattctgtctttctcccacctccaaaactcgaatttagctatgataatcaggagtggattcagaaagaaggtgatgaggtgcgcagaagggctaatgcgttgtttgctgaggtgtccaaagttcttcatgtcaagttggaaaaattctctgttgatagcagcttgaaagcacccaagacaagtgagcagatcacagagatggaagaaatattagagaaggagaaaactgagtttgagggattattacgcaaggcacttagcagggagatcaaagttggtcagcctacagttgacatccttgagataaatcaactgagaaggcagttggtttttcatgcttatctatgggacagacgtttgatacatctttccagttctcatggtaaaaattcccgaactccgggcagtttgacacaactgaaggagaaacccctcagctctagtgaggaacttcctgaaaggactgcaattttgagacctggaaaaaatttggggagctatgattcacctcttcagaatgtgaagactgaaataacatctagtgaaagaagacatggtcagattcctgatggggttcacgaaagattgactactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="93038" stop="98374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93338" g_stop="93509" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93510" i_stop="96218" i_length="2709">
            <donor d_prob="0.569" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96219" g_stop="96342" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="296" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96343" i_stop="96427" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96428" g_stop="96586" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="455" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96587" i_stop="97715" i_length="1129">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97716" g_stop="98074" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="814" r_length="359" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E703519" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93338" e_stop="93509"/>
          <exon e_start="96219" e_stop="96342"/>
          <exon e_start="96428" e_stop="96586"/>
          <exon e_start="97716" e_stop="98074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTCGGGACAATGGTTTCCCTCCTCCAACCAGGAGGGTAGTAATGTCTAATGCTGCTTGGGGGTTGTCATTTGGGAAATTTTTGGAACTCAGTTTTTCAAATCATGCAGCAGCGAGCAGGGTTGCAAGTTGTGGTCATCTTCTTCACCGGGACTGTCTCCGGTTCTATGGGTATGCTGTTTCCAGTAAGGCATTTGTACGCATCATCTTTCTACACTGGGATTGCAATGCTTTCACCTATTTGGATGAGTGCTCTTTTTCTTTAATCAGCTACCTAATATCATGTAAAGTATGTAGAGAGACAGAAACCCGTTGCATTAGTAAAATTATCATAAAAGCCTCAGACGCATTTCCTGTATAATGGTTAAAGTTGGTATCAGCAAGCAAGTACGTTATTTCAAATAGACAGTTTCACATAAACTTGTGGAAACATTACCTTCTAAGTTGTTAAAGTAGGCGCCTAACCCCACTTCATGTGAAAATTTTCTAACTTGAATTGACTAATATAGACTTGCTGATAACAGCTACTAATGACAAACTCCTCAGTGACATTAGGTCATAGGTTGGATCATTTTGTTTACCAGTGTTTTGTCTGGTTGAGCCGTTGAGGTTCTTAATATTGCATGGATCCTCAGCTTTTAGTTGTTTGCATGAATACTATGATGATGTTGCTCATCAGCATGTATCAACTATCCTGACTGTTTTATATTAAGATTTACTGAACGCTCCAAGGCAGGTCTCCCAAAAACTCTCTCCCCTACTTCTTAGGAGTGTAAAACGTCTTTTCCAGTGGTTTTCAACTGGGAAAACCTTTCTTTTTCTTCTAATCTTAAGTCATCACCTTCTGTGATAGCTTTCAACCTTTTCTTTCTTCATTTTCAGAGATGGGGGATAATATTATTTACTTTAATGCTGGTTTTAAATCCTCCGACATTACTAGATGGACTGCTGGAACACCATTTGTTTTGTATGGGTGAAGAGAAGCTGTTATAATGAGAAGTCCTGCATTAGCAGTAAGATCATGGAATGAATATGCTCTGTCCTTAAAGAGTCCTTGACAGATCAGAAGAATGTGGTAAGGAGATGGAAAACCATAGACCAGGGCCCAGAACATTTTTTGCACCAGAAAATCTAACGAACGAGGGAGATATATGAATATCTTATCCTTAAATGGTGGTGGGAGATCTGTCATTAGTATCCCGGAAACAGTTTATAATGCTGGTTGGTGTGATATTGCATTTAAGGTAGAAAGATTTATTAAATGATCTCCAAAGTTGGATGAAGTGGAGGCTTGGCCCTCTTGAGTCTTGTGTGTTTAGAAGGTACCACCTAAACTTAAAGGCAAGTTTTAAGAAGAAGTGGTTAGACTGGCGTTATTGTATGGGCAGAGTGTTGGCCAGTCTAGAACTCCGATGTATTGAAGATGCAAGTCTCGGGAATGAGGTTTGAGATGGGTGTTGGGCACACTAGGAGAGATAAAATTAGAAATGAGGTTACTTCTTGACAAGGTGGGAGTGGCCTCTATGGTGGACAAGATGCGAAGCAAGACCAAGATGGTGAGGAGATGTGTAGATGCCCAATGAAAAGGTGTAAGAGGTTGGTCATAGTGAGTATGAGGAGAGAGAGGTAGACCGAAAAATTATTGGGGAGAGGTGATTAGACGGGACATGGTGCAACTCCAGATTACCGAGGATGACCTTAGATAGGAGGGTGTGAAGGTCGGGTACAGAAGGCTAGTAGGTATGGAGTGTCGTCTTTTTTTTGAGGTGTTTAGCCGTTTTCTTATAGCGTCTTGCTTTTGATTCCACCATCACTTGTTGATTGTGTTTAGGTTATCCCATTATTTTGTGGTTGTTACTGTTTTCTTATTAGTTGCTTTGTTTCTCCACTGTTGTTTTCCCTTTTTCATTATTCGGATATGTTCTACTCGAGCCGAGGGTCCTTCAGGAACAGTATTCTTACCTCCATTAGGTAGGGTTATGGTCTGGGTACACTCTATTCTCCCCAGACACCACTTGTGGGATTTCACTGTGTGGTGTTATTGTTAGGTTCTACATAGAGGTAGATCAGTTTTGTTTCTCGAGTACACTTGTAAAATGTGGTTTCAGTACCGCCCATGTGCTGTTTTCCCCACTTTTATATGTTTTTATATATTGGGTTTACTGATTTATTTTTGCTTGTTCCAAATGTTTCTGTGACCTAGAATTTACAATTTGAACTTCTTGTATTGCTCTATGGGAGAGCTTGTGATGCTACTTCTTATTGCGGTCTGTTGACTACATCATTTTATCAGTATAGATATGGAGTCCCTGCTAGGAAAAGGGAACTTCTGTTAATAAGAGAGAACACTACAACAAGAGAATGCTTCCAGAAATCTTGACAAAATGGATAAGTTGCATCACATCGTATAAAAGGCTTATAAGTTGCATCACATAGTGGAAAGGCTTAGAGAAACTGGATATTTTCCTATCGCTTGAACCCTTTCACTGGAGAACTCAAGGGGGAAAAATTCTTCAACATAGTCACTAGAAGGTGGTCTACGACCATTAGATCCCTAGAAAGAGGAGTAACTAAGAAGAGAGAGATATAAAAGAAGGAAAGGAATATCAGGAAAATCTTACAGGTGTATGGTTTTCTTGTCATTTTTGTTACTGTTCCATTTCTAGTTTTTTAATGGTGACTTCCCCATATTCTGGGTTAATAGTCTCAGTCGGTGTTGTGTTATCTTGTGCTCGATTCTGGTTATGGTGCATGTGTAGCAGGTGTTCCGTTCTAATCTTTCTTAGATTTATTCATTTGATGGTCCCACAAAGTATTTATTTCCCTTTCTTGTTGCTGAAACAATGCTTTTCTGCACCTCATCTTTGGTTGTTGCCACAGGTTTGGGAAAATGGTAGCTTGTTTTCGATATGCTCCTGTTCATGTTTATTCTGTCTTTCTCCCACCTCCAAAACTCGAATTTAGCTATGATAATCAGGAGTGGATTCAGAAAGAAGGTGATGAGGTACAATTGGATTAAATTCTTGCGTTAGTTTTGATACTTCTATGTTTTGCTTTTTTCCTGATGTGTTTGTCTCCTGCAAGAGAAGGTGCGCAGAAGGGCTAATGCGTTGTTTGCTGAGGTGTCCAAAGTTCTTCATGTCAAGTTGGAAAAATTCTCTGTTGATAGCAGCTTGAAAGCACCCAAGACAAGTGAGCAGATCACAGAGATGGAAGAAATATTAGAGAAGGAGAAAACTGAGTTTGAGGTGGTTTCTTGTTTTTTCTTTCCTGTTGTTGAGATACTAAGTCATAACATCTGCATTGTCAGTGATGTATGAACAAATTTGTCAATCTGGTCTATTGAAAATGTAGCGATTAGTGACCTGTTTGAAGTTCAACTATTTGAGAGATGATTTCCAAAGTAATATCTCTCTTCTTTGGTGTGGATAACATGTTCCAAACCTTTTTAACTTTTTTAAACAACTTGAGAGTTTTAGTATGATTTGTGAGAAAATTCAGAGGCATGTTCCATCATTCTAAGATATGTGAAAATCAATGCAGCAGCAAGTTTGAGAAGAAAGAAATGATCAGGGTTCTCTGTAAGAATTAGCAGTAAAAAAAAGAATATAAGAGGAGTCAACAGAGGAAAACAACTGATTGAAGAGAGACTACAGTCCCAAGATGAACATGTATCCTAGGTCCTTTTGGTTCTAACAGAGAAAGGGTCTTTGGTTTGACTAGTCATCAAACCAGAAGTTGGGTTTCTTCCATTATAAATGTGTAATATAGAATCCTTCCTTTTGATGGGTCACCTCAGGAAGAAAGCGTTTTAATCTTTGAGTAATTGAGACCATACCCCATATAACTGTTAGGTCTAGGTCCTCAACCTTACCACCTTCCTCTGGGGCAATTAGGAACTCCCTCAACTGGAGGACTGTTCCTCAGAGCTGCACTTCAATTGCTGCTGTTTCTCTCAGTAGATGTACAGCTGTTGGGAACTTCAGTGTAAAGGGCATTATAACTCAAAATACATCTATTTCTTCTAATTAAAAGTCTGTTTGGTGGTAATTTTTCATTTAAGGCATGACCTCAAGTTTCCTTCTGAACAACAACTGCACCCCTGGGGATGAGTGGTTGCTCAATACCATCCCCTCTCTAGTCACAGCAGAAGATAATCAGTTTCTTACGGGCCCTCCTAATACGGAATAGTTCAAAAGTTAATTTTTAGCATGTGGGCACGCACTAACCCCCAAAAAGGTCCTCCCCATAGCCTTTAAAGCCTTATTTAGGGTAGATTCTTTTATTTCCTCTGTTCACCCTTTTCATTTTCTTTTGGGTAAGGTAGCAATGTAGCTCCAAATGACTTATTTCTTACTGGTGTTTTCATTGTTCTAGGGATTATTACGCAAGGCACTTAGCAGGGAGATCAAAGTTGGTCAGCCTACAGTTGACATCCTTGAGATAAATCAACTGAGAAGGCAGTTGGTTTTTCATGCTTATCTATGGGACAGACGTTTGATACATCTTTCCAGTTCTCATGGTAAAAATTCCCGAACTCCGGGCAGTTTGACACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGA</genome_strand>
        <mrna_strand>GTCCTCGGGACAATGGTTTCCCTCCTCCAACCAGGAGGGTAGTAATGTCTAATGCTGCTTGGGGGTTGTCATTTGGGAAATTTTTGGAACTCAGTTTTTCAAATCATGCAGCAGCGAGCAGGGTTGCAAGTTGTGGTCATCTTCTTCACCGGGACTGTCTCCGGTTCTATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGGAAAATGGTAGCTTGTTTTCGATATGCTCCTGTTCATGTTTATTCTGTCTTTCTCCCACCTCCAAAACTCGAATTTAGCTATGATAATCAGGAGTGGATTCAGAAAGAAGGTGATGAG.....................................................................................GTGCGCAGAAGGGCTAATGCGTTGTTTGCTGAGGTGTCCAAAGTTCTTCATGTCAAGTTGGAAAAATTCTCTGTTGATAGCAGCTTGAAAGCACCCAAGACAAGTGAGCAGATCACAGAGATGGAAGAAATATTAGAGAAGGAGAAAACTGAGTTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACGCAAGGCACTTAGCAGGGAGATCAAAGTTGGTCAGCCTACAGTTGACATCCTTGAGATAAATCAACTGAGAAGGCAGTTGGTTTTTCATGCTTATCTATGGGACAGACGTTTGATACATCTTTCCAGTTCTCATGGTAAAAATTCCCGAACTCCGGGCAGTTTGACACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAATTTGGGGAGCTATGATTCACCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAAGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E701704" ref_strand="+" ref_description="SGN-E701704 [FA16CH03]">
      <seq>atttgggaaatttttggaactcagtttttcaaatcatgcagcagcgagcagggttgcaagttgtggtcatcttcttcaccgggactgtctccggttctatgggtttgggaaaatggtagcttgttttcgatatgctcctgttcatgtttattctgtctttctcccacctccaaaactcgaatttagctatgataatcaggagtggattcagaaagaaggtgatgaggtgcgcagaagggctaatgcgttgtttgctgaggtgtccaaagttcttcatgtcaagttggaaaaattctctgttgatagcagcttgaaagcacccaagacaagtgagcagatcacagagatggaagaaatattagagaaggagaaaactgagtttgagggattattacgcaaggcacttagcagggagatcaaagttggtcagcctacagttgacatccttgagataaatcaactgagaaggcagttggtttttcatgcttatctatgggacagacgtttgatacatctttccagttctcatggtaaaaattcccgaactccgggcagtttgacacaactgaaggagaaacccctcagctctagtgaggaacttcctgaaaggactgcaattttgagacctggaaaaagtttggggagctatgattcagctcttcagaatgtgaagactgaaataacatctagtgaaggaagacatggtcagattcctgatggggttcacgaaagattgactactgatgagaacctaactcaccggaaagactgcgaaattttctgtgctatagaaatacaggagatggtaatgtactggaacctgaaaaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="93108" stop="98464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93408" g_stop="93509" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93510" i_stop="96218" i_length="2709">
            <donor d_prob="0.569" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96219" g_stop="96342" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="226" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96343" i_stop="96427" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96428" g_stop="96586" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="385" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96587" i_stop="97715" i_length="1129">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97716" g_stop="98164" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="833" r_length="448" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E701704" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93408" e_stop="93509"/>
          <exon e_start="96219" e_stop="96342"/>
          <exon e_start="96428" e_stop="96586"/>
          <exon e_start="97716" e_stop="98164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGGAAATTTTTGGAACTCAGTTTTTCAAATCATGCAGCAGCGAGCAGGGTTGCAAGTTGTGGTCATCTTCTTCACCGGGACTGTCTCCGGTTCTATGGGTATGCTGTTTCCAGTAAGGCATTTGTACGCATCATCTTTCTACACTGGGATTGCAATGCTTTCACCTATTTGGATGAGTGCTCTTTTTCTTTAATCAGCTACCTAATATCATGTAAAGTATGTAGAGAGACAGAAACCCGTTGCATTAGTAAAATTATCATAAAAGCCTCAGACGCATTTCCTGTATAATGGTTAAAGTTGGTATCAGCAAGCAAGTACGTTATTTCAAATAGACAGTTTCACATAAACTTGTGGAAACATTACCTTCTAAGTTGTTAAAGTAGGCGCCTAACCCCACTTCATGTGAAAATTTTCTAACTTGAATTGACTAATATAGACTTGCTGATAACAGCTACTAATGACAAACTCCTCAGTGACATTAGGTCATAGGTTGGATCATTTTGTTTACCAGTGTTTTGTCTGGTTGAGCCGTTGAGGTTCTTAATATTGCATGGATCCTCAGCTTTTAGTTGTTTGCATGAATACTATGATGATGTTGCTCATCAGCATGTATCAACTATCCTGACTGTTTTATATTAAGATTTACTGAACGCTCCAAGGCAGGTCTCCCAAAAACTCTCTCCCCTACTTCTTAGGAGTGTAAAACGTCTTTTCCAGTGGTTTTCAACTGGGAAAACCTTTCTTTTTCTTCTAATCTTAAGTCATCACCTTCTGTGATAGCTTTCAACCTTTTCTTTCTTCATTTTCAGAGATGGGGGATAATATTATTTACTTTAATGCTGGTTTTAAATCCTCCGACATTACTAGATGGACTGCTGGAACACCATTTGTTTTGTATGGGTGAAGAGAAGCTGTTATAATGAGAAGTCCTGCATTAGCAGTAAGATCATGGAATGAATATGCTCTGTCCTTAAAGAGTCCTTGACAGATCAGAAGAATGTGGTAAGGAGATGGAAAACCATAGACCAGGGCCCAGAACATTTTTTGCACCAGAAAATCTAACGAACGAGGGAGATATATGAATATCTTATCCTTAAATGGTGGTGGGAGATCTGTCATTAGTATCCCGGAAACAGTTTATAATGCTGGTTGGTGTGATATTGCATTTAAGGTAGAAAGATTTATTAAATGATCTCCAAAGTTGGATGAAGTGGAGGCTTGGCCCTCTTGAGTCTTGTGTGTTTAGAAGGTACCACCTAAACTTAAAGGCAAGTTTTAAGAAGAAGTGGTTAGACTGGCGTTATTGTATGGGCAGAGTGTTGGCCAGTCTAGAACTCCGATGTATTGAAGATGCAAGTCTCGGGAATGAGGTTTGAGATGGGTGTTGGGCACACTAGGAGAGATAAAATTAGAAATGAGGTTACTTCTTGACAAGGTGGGAGTGGCCTCTATGGTGGACAAGATGCGAAGCAAGACCAAGATGGTGAGGAGATGTGTAGATGCCCAATGAAAAGGTGTAAGAGGTTGGTCATAGTGAGTATGAGGAGAGAGAGGTAGACCGAAAAATTATTGGGGAGAGGTGATTAGACGGGACATGGTGCAACTCCAGATTACCGAGGATGACCTTAGATAGGAGGGTGTGAAGGTCGGGTACAGAAGGCTAGTAGGTATGGAGTGTCGTCTTTTTTTTGAGGTGTTTAGCCGTTTTCTTATAGCGTCTTGCTTTTGATTCCACCATCACTTGTTGATTGTGTTTAGGTTATCCCATTATTTTGTGGTTGTTACTGTTTTCTTATTAGTTGCTTTGTTTCTCCACTGTTGTTTTCCCTTTTTCATTATTCGGATATGTTCTACTCGAGCCGAGGGTCCTTCAGGAACAGTATTCTTACCTCCATTAGGTAGGGTTATGGTCTGGGTACACTCTATTCTCCCCAGACACCACTTGTGGGATTTCACTGTGTGGTGTTATTGTTAGGTTCTACATAGAGGTAGATCAGTTTTGTTTCTCGAGTACACTTGTAAAATGTGGTTTCAGTACCGCCCATGTGCTGTTTTCCCCACTTTTATATGTTTTTATATATTGGGTTTACTGATTTATTTTTGCTTGTTCCAAATGTTTCTGTGACCTAGAATTTACAATTTGAACTTCTTGTATTGCTCTATGGGAGAGCTTGTGATGCTACTTCTTATTGCGGTCTGTTGACTACATCATTTTATCAGTATAGATATGGAGTCCCTGCTAGGAAAAGGGAACTTCTGTTAATAAGAGAGAACACTACAACAAGAGAATGCTTCCAGAAATCTTGACAAAATGGATAAGTTGCATCACATCGTATAAAAGGCTTATAAGTTGCATCACATAGTGGAAAGGCTTAGAGAAACTGGATATTTTCCTATCGCTTGAACCCTTTCACTGGAGAACTCAAGGGGGAAAAATTCTTCAACATAGTCACTAGAAGGTGGTCTACGACCATTAGATCCCTAGAAAGAGGAGTAACTAAGAAGAGAGAGATATAAAAGAAGGAAAGGAATATCAGGAAAATCTTACAGGTGTATGGTTTTCTTGTCATTTTTGTTACTGTTCCATTTCTAGTTTTTTAATGGTGACTTCCCCATATTCTGGGTTAATAGTCTCAGTCGGTGTTGTGTTATCTTGTGCTCGATTCTGGTTATGGTGCATGTGTAGCAGGTGTTCCGTTCTAATCTTTCTTAGATTTATTCATTTGATGGTCCCACAAAGTATTTATTTCCCTTTCTTGTTGCTGAAACAATGCTTTTCTGCACCTCATCTTTGGTTGTTGCCACAGGTTTGGGAAAATGGTAGCTTGTTTTCGATATGCTCCTGTTCATGTTTATTCTGTCTTTCTCCCACCTCCAAAACTCGAATTTAGCTATGATAATCAGGAGTGGATTCAGAAAGAAGGTGATGAGGTACAATTGGATTAAATTCTTGCGTTAGTTTTGATACTTCTATGTTTTGCTTTTTTCCTGATGTGTTTGTCTCCTGCAAGAGAAGGTGCGCAGAAGGGCTAATGCGTTGTTTGCTGAGGTGTCCAAAGTTCTTCATGTCAAGTTGGAAAAATTCTCTGTTGATAGCAGCTTGAAAGCACCCAAGACAAGTGAGCAGATCACAGAGATGGAAGAAATATTAGAGAAGGAGAAAACTGAGTTTGAGGTGGTTTCTTGTTTTTTCTTTCCTGTTGTTGAGATACTAAGTCATAACATCTGCATTGTCAGTGATGTATGAACAAATTTGTCAATCTGGTCTATTGAAAATGTAGCGATTAGTGACCTGTTTGAAGTTCAACTATTTGAGAGATGATTTCCAAAGTAATATCTCTCTTCTTTGGTGTGGATAACATGTTCCAAACCTTTTTAACTTTTTTAAACAACTTGAGAGTTTTAGTATGATTTGTGAGAAAATTCAGAGGCATGTTCCATCATTCTAAGATATGTGAAAATCAATGCAGCAGCAAGTTTGAGAAGAAAGAAATGATCAGGGTTCTCTGTAAGAATTAGCAGTAAAAAAAAGAATATAAGAGGAGTCAACAGAGGAAAACAACTGATTGAAGAGAGACTACAGTCCCAAGATGAACATGTATCCTAGGTCCTTTTGGTTCTAACAGAGAAAGGGTCTTTGGTTTGACTAGTCATCAAACCAGAAGTTGGGTTTCTTCCATTATAAATGTGTAATATAGAATCCTTCCTTTTGATGGGTCACCTCAGGAAGAAAGCGTTTTAATCTTTGAGTAATTGAGACCATACCCCATATAACTGTTAGGTCTAGGTCCTCAACCTTACCACCTTCCTCTGGGGCAATTAGGAACTCCCTCAACTGGAGGACTGTTCCTCAGAGCTGCACTTCAATTGCTGCTGTTTCTCTCAGTAGATGTACAGCTGTTGGGAACTTCAGTGTAAAGGGCATTATAACTCAAAATACATCTATTTCTTCTAATTAAAAGTCTGTTTGGTGGTAATTTTTCATTTAAGGCATGACCTCAAGTTTCCTTCTGAACAACAACTGCACCCCTGGGGATGAGTGGTTGCTCAATACCATCCCCTCTCTAGTCACAGCAGAAGATAATCAGTTTCTTACGGGCCCTCCTAATACGGAATAGTTCAAAAGTTAATTTTTAGCATGTGGGCACGCACTAACCCCCAAAAAGGTCCTCCCCATAGCCTTTAAAGCCTTATTTAGGGTAGATTCTTTTATTTCCTCTGTTCACCCTTTTCATTTTCTTTTGGGTAAGGTAGCAATGTAGCTCCAAATGACTTATTTCTTACTGGTGTTTTCATTGTTCTAGGGATTATTACGCAAGGCACTTAGCAGGGAGATCAAAGTTGGTCAGCCTACAGTTGACATCCTTGAGATAAATCAACTGAGAAGGCAGTTGGTTTTTCATGCTTATCTATGGGACAGACGTTTGATACATCTTTCCAGTTCTCATGGTAAAAATTCCCGAACTCCGGGCAGTTTGACACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACTGCGAGATTTTCTGTGCTATAAGAAATACAGGAGATGGTAATGTACTGGAACCTGGAAAAAATGT</genome_strand>
        <mrna_strand>ATTTGGGAAATTTTTGGAACTCAGTTTTTCAAATCATGCAGCAGCGAGCAGGGTTGCAAGTTGTGGTCATCTTCTTCACCGGGACTGTCTCCGGTTCTATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGGAAAATGGTAGCTTGTTTTCGATATGCTCCTGTTCATGTTTATTCTGTCTTTCTCCCACCTCCAAAACTCGAATTTAGCTATGATAATCAGGAGTGGATTCAGAAAGAAGGTGATGAG.....................................................................................GTGCGCAGAAGGGCTAATGCGTTGTTTGCTGAGGTGTCCAAAGTTCTTCATGTCAAGTTGGAAAAATTCTCTGTTGATAGCAGCTTGAAAGCACCCAAGACAAGTGAGCAGATCACAGAGATGGAAGAAATATTAGAGAAGGAGAAAACTGAGTTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACGCAAGGCACTTAGCAGGGAGATCAAAGTTGGTCAGCCTACAGTTGACATCCTTGAGATAAATCAACTGAGAAGGCAGTTGGTTTTTCATGCTTATCTATGGGACAGACGTTTGATACATCTTTCCAGTTCTCATGGTAAAAATTCCCGAACTCCGGGCAGTTTGACACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACCGGAAAGACTGCGAAATTTTCTGTGCTAT-AGAAATACAGGAGATGGTAATGTACTGGAACCTGAAAAAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E263582" ref_strand="+" ref_description="SGN-E263582 [cLEG-60-J19]">
      <seq>tggaactcagtttttcaaatcatgcagcagcgagcagggttgcaagttgtggtcatcttcttcaccgggactgtctccggttctatgggtttgggaaaatggtagcttgttttcgatatgctcctgttcatgtttattctgtctttctcccacctccaaaactcgaatttagctatgataatcaggagtggattcagaaagaaggtgatgaggtgcgcagaagggctaatgcgttgtttgctgaggtgtccaaagttcttcatgtcaagttggaaaaattctctgttgatagcagcttgaaagcacccaagacaagtgagcagatcacagagatggaagaaatattagagaaggagaaaactgagtttgagggattattacgcaaggcacttagcagggagatcaaagttggtcagcctacagttgacatccttgagataaatcaactgagaaggcagttggtttttcatgcttatctatgggacagacgtttgatacatctttccagttctcatggtaaaaattcccgaactccgggcagtttgacacaactgaaggagaaacccctcagctctagtgaggaacttcctgaaaggactgcaattttgagacctggaaaaagtttggggagctatgattcagctcttcagaatgtgaagactgaaataacatctagtngaggaagacatggtcagatttcctgatggggttcacgaaagattgactactgatgagaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="93122" stop="98383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93422" g_stop="93509" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93510" i_stop="96218" i_length="2709">
            <donor d_prob="0.569" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96219" g_stop="96342" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="212" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96343" i_stop="96427" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96428" g_stop="96586" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="371" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96587" i_stop="97715" i_length="1129">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97716" g_stop="98083" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="740" r_length="369" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E263582" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93422" e_stop="93509"/>
          <exon e_start="96219" e_stop="96342"/>
          <exon e_start="96428" e_stop="96586"/>
          <exon e_start="97716" e_stop="98083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACTCAGTTTTTCAAATCATGCAGCAGCGAGCAGGGTTGCAAGTTGTGGTCATCTTCTTCACCGGGACTGTCTCCGGTTCTATGGGTATGCTGTTTCCAGTAAGGCATTTGTACGCATCATCTTTCTACACTGGGATTGCAATGCTTTCACCTATTTGGATGAGTGCTCTTTTTCTTTAATCAGCTACCTAATATCATGTAAAGTATGTAGAGAGACAGAAACCCGTTGCATTAGTAAAATTATCATAAAAGCCTCAGACGCATTTCCTGTATAATGGTTAAAGTTGGTATCAGCAAGCAAGTACGTTATTTCAAATAGACAGTTTCACATAAACTTGTGGAAACATTACCTTCTAAGTTGTTAAAGTAGGCGCCTAACCCCACTTCATGTGAAAATTTTCTAACTTGAATTGACTAATATAGACTTGCTGATAACAGCTACTAATGACAAACTCCTCAGTGACATTAGGTCATAGGTTGGATCATTTTGTTTACCAGTGTTTTGTCTGGTTGAGCCGTTGAGGTTCTTAATATTGCATGGATCCTCAGCTTTTAGTTGTTTGCATGAATACTATGATGATGTTGCTCATCAGCATGTATCAACTATCCTGACTGTTTTATATTAAGATTTACTGAACGCTCCAAGGCAGGTCTCCCAAAAACTCTCTCCCCTACTTCTTAGGAGTGTAAAACGTCTTTTCCAGTGGTTTTCAACTGGGAAAACCTTTCTTTTTCTTCTAATCTTAAGTCATCACCTTCTGTGATAGCTTTCAACCTTTTCTTTCTTCATTTTCAGAGATGGGGGATAATATTATTTACTTTAATGCTGGTTTTAAATCCTCCGACATTACTAGATGGACTGCTGGAACACCATTTGTTTTGTATGGGTGAAGAGAAGCTGTTATAATGAGAAGTCCTGCATTAGCAGTAAGATCATGGAATGAATATGCTCTGTCCTTAAAGAGTCCTTGACAGATCAGAAGAATGTGGTAAGGAGATGGAAAACCATAGACCAGGGCCCAGAACATTTTTTGCACCAGAAAATCTAACGAACGAGGGAGATATATGAATATCTTATCCTTAAATGGTGGTGGGAGATCTGTCATTAGTATCCCGGAAACAGTTTATAATGCTGGTTGGTGTGATATTGCATTTAAGGTAGAAAGATTTATTAAATGATCTCCAAAGTTGGATGAAGTGGAGGCTTGGCCCTCTTGAGTCTTGTGTGTTTAGAAGGTACCACCTAAACTTAAAGGCAAGTTTTAAGAAGAAGTGGTTAGACTGGCGTTATTGTATGGGCAGAGTGTTGGCCAGTCTAGAACTCCGATGTATTGAAGATGCAAGTCTCGGGAATGAGGTTTGAGATGGGTGTTGGGCACACTAGGAGAGATAAAATTAGAAATGAGGTTACTTCTTGACAAGGTGGGAGTGGCCTCTATGGTGGACAAGATGCGAAGCAAGACCAAGATGGTGAGGAGATGTGTAGATGCCCAATGAAAAGGTGTAAGAGGTTGGTCATAGTGAGTATGAGGAGAGAGAGGTAGACCGAAAAATTATTGGGGAGAGGTGATTAGACGGGACATGGTGCAACTCCAGATTACCGAGGATGACCTTAGATAGGAGGGTGTGAAGGTCGGGTACAGAAGGCTAGTAGGTATGGAGTGTCGTCTTTTTTTTGAGGTGTTTAGCCGTTTTCTTATAGCGTCTTGCTTTTGATTCCACCATCACTTGTTGATTGTGTTTAGGTTATCCCATTATTTTGTGGTTGTTACTGTTTTCTTATTAGTTGCTTTGTTTCTCCACTGTTGTTTTCCCTTTTTCATTATTCGGATATGTTCTACTCGAGCCGAGGGTCCTTCAGGAACAGTATTCTTACCTCCATTAGGTAGGGTTATGGTCTGGGTACACTCTATTCTCCCCAGACACCACTTGTGGGATTTCACTGTGTGGTGTTATTGTTAGGTTCTACATAGAGGTAGATCAGTTTTGTTTCTCGAGTACACTTGTAAAATGTGGTTTCAGTACCGCCCATGTGCTGTTTTCCCCACTTTTATATGTTTTTATATATTGGGTTTACTGATTTATTTTTGCTTGTTCCAAATGTTTCTGTGACCTAGAATTTACAATTTGAACTTCTTGTATTGCTCTATGGGAGAGCTTGTGATGCTACTTCTTATTGCGGTCTGTTGACTACATCATTTTATCAGTATAGATATGGAGTCCCTGCTAGGAAAAGGGAACTTCTGTTAATAAGAGAGAACACTACAACAAGAGAATGCTTCCAGAAATCTTGACAAAATGGATAAGTTGCATCACATCGTATAAAAGGCTTATAAGTTGCATCACATAGTGGAAAGGCTTAGAGAAACTGGATATTTTCCTATCGCTTGAACCCTTTCACTGGAGAACTCAAGGGGGAAAAATTCTTCAACATAGTCACTAGAAGGTGGTCTACGACCATTAGATCCCTAGAAAGAGGAGTAACTAAGAAGAGAGAGATATAAAAGAAGGAAAGGAATATCAGGAAAATCTTACAGGTGTATGGTTTTCTTGTCATTTTTGTTACTGTTCCATTTCTAGTTTTTTAATGGTGACTTCCCCATATTCTGGGTTAATAGTCTCAGTCGGTGTTGTGTTATCTTGTGCTCGATTCTGGTTATGGTGCATGTGTAGCAGGTGTTCCGTTCTAATCTTTCTTAGATTTATTCATTTGATGGTCCCACAAAGTATTTATTTCCCTTTCTTGTTGCTGAAACAATGCTTTTCTGCACCTCATCTTTGGTTGTTGCCACAGGTTTGGGAAAATGGTAGCTTGTTTTCGATATGCTCCTGTTCATGTTTATTCTGTCTTTCTCCCACCTCCAAAACTCGAATTTAGCTATGATAATCAGGAGTGGATTCAGAAAGAAGGTGATGAGGTACAATTGGATTAAATTCTTGCGTTAGTTTTGATACTTCTATGTTTTGCTTTTTTCCTGATGTGTTTGTCTCCTGCAAGAGAAGGTGCGCAGAAGGGCTAATGCGTTGTTTGCTGAGGTGTCCAAAGTTCTTCATGTCAAGTTGGAAAAATTCTCTGTTGATAGCAGCTTGAAAGCACCCAAGACAAGTGAGCAGATCACAGAGATGGAAGAAATATTAGAGAAGGAGAAAACTGAGTTTGAGGTGGTTTCTTGTTTTTTCTTTCCTGTTGTTGAGATACTAAGTCATAACATCTGCATTGTCAGTGATGTATGAACAAATTTGTCAATCTGGTCTATTGAAAATGTAGCGATTAGTGACCTGTTTGAAGTTCAACTATTTGAGAGATGATTTCCAAAGTAATATCTCTCTTCTTTGGTGTGGATAACATGTTCCAAACCTTTTTAACTTTTTTAAACAACTTGAGAGTTTTAGTATGATTTGTGAGAAAATTCAGAGGCATGTTCCATCATTCTAAGATATGTGAAAATCAATGCAGCAGCAAGTTTGAGAAGAAAGAAATGATCAGGGTTCTCTGTAAGAATTAGCAGTAAAAAAAAGAATATAAGAGGAGTCAACAGAGGAAAACAACTGATTGAAGAGAGACTACAGTCCCAAGATGAACATGTATCCTAGGTCCTTTTGGTTCTAACAGAGAAAGGGTCTTTGGTTTGACTAGTCATCAAACCAGAAGTTGGGTTTCTTCCATTATAAATGTGTAATATAGAATCCTTCCTTTTGATGGGTCACCTCAGGAAGAAAGCGTTTTAATCTTTGAGTAATTGAGACCATACCCCATATAACTGTTAGGTCTAGGTCCTCAACCTTACCACCTTCCTCTGGGGCAATTAGGAACTCCCTCAACTGGAGGACTGTTCCTCAGAGCTGCACTTCAATTGCTGCTGTTTCTCTCAGTAGATGTACAGCTGTTGGGAACTTCAGTGTAAAGGGCATTATAACTCAAAATACATCTATTTCTTCTAATTAAAAGTCTGTTTGGTGGTAATTTTTCATTTAAGGCATGACCTCAAGTTTCCTTCTGAACAACAACTGCACCCCTGGGGATGAGTGGTTGCTCAATACCATCCCCTCTCTAGTCACAGCAGAAGATAATCAGTTTCTTACGGGCCCTCCTAATACGGAATAGTTCAAAAGTTAATTTTTAGCATGTGGGCACGCACTAACCCCCAAAAAGGTCCTCCCCATAGCCTTTAAAGCCTTATTTAGGGTAGATTCTTTTATTTCCTCTGTTCACCCTTTTCATTTTCTTTTGGGTAAGGTAGCAATGTAGCTCCAAATGACTTATTTCTTACTGGTGTTTTCATTGTTCTAGGGATTATTACGCAAGGCACTTAGCAGGGAGATCAAAGTTGGTCAGCCTACAGTTGACATCCTTGAGATAAATCAACTGAGAAGGCAGTTGGTTTTTCATGCTTATCTATGGGACAGACGTTTGATACATCTTTCCAGTTCTCATGGTAAAAATTCCCGAACTCCGGGCAGTTTGACACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGA-TTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCT</genome_strand>
        <mrna_strand>TGGAACTCAGTTTTTCAAATCATGCAGCAGCGAGCAGGGTTGCAAGTTGTGGTCATCTTCTTCACCGGGACTGTCTCCGGTTCTATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGGAAAATGGTAGCTTGTTTTCGATATGCTCCTGTTCATGTTTATTCTGTCTTTCTCCCACCTCCAAAACTCGAATTTAGCTATGATAATCAGGAGTGGATTCAGAAAGAAGGTGATGAG.....................................................................................GTGCGCAGAAGGGCTAATGCGTTGTTTGCTGAGGTGTCCAAAGTTCTTCATGTCAAGTTGGAAAAATTCTCTGTTGATAGCAGCTTGAAAGCACCCAAGACAAGTGAGCAGATCACAGAGATGGAAGAAATATTAGAGAAGGAGAAAACTGAGTTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACGCAAGGCACTTAGCAGGGAGATCAAAGTTGGTCAGCCTACAGTTGACATCCTTGAGATAAATCAACTGAGAAGGCAGTTGGTTTTTCATGCTTATCTATGGGACAGACGTTTGATACATCTTTCCAGTTCTCATGGTAAAAATTCCCGAACTCCGGGCAGTTTGACACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTNGAGGAAGACATGGTCAGATTTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E293047" ref_strand="+" ref_description="SGN-E293047 [cLET-12-M11]">
      <seq>aagggctaatgcgttgtttgctgaggtgtccaaagttcttcatgtcaagttggaaaaattctctgttgatagcagcttgaaagcacccaagacaagtgagcagatcacagagatggaagaaatattagagaaggagaaaactgagtttgagggattattacgcaaggcacttagcagggagatcaaagttggtcagcctacagttgacatccttgagataaatcaactgagaaggcagttggtttttcatgcttatctatgggacagacgtttgatacatctttccagttctcatggtaaaaattcccgaactccgggcagtttgacacaactgaaggagaaacccctcagctctagtgaggaacttcctgaaaggactgcaattttgagacctggaaaaagtttggggagctatgattcagctcttcagaatgtgaagactgaaataacatctagtgaaggaagacatggtcagattcctgatggggttcacgaaagattgactactgatgagaacctaactcacgggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="96136" stop="98397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96436" g_stop="96586" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96587" i_stop="97715" i_length="1129">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97716" g_stop="98097" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="533" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E293047" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96436" e_stop="96586"/>
          <exon e_start="97716" e_stop="98097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGCTAATGCGTTGTTTGCTGAGGTGTCCAAAGTTCTTCATGTCAAGTTGGAAAAATTCTCTGTTGATAGCAGCTTGAAAGCACCCAAGACAAGTGAGCAGATCACAGAGATGGAAGAAATATTAGAGAAGGAGAAAACTGAGTTTGAGGTGGTTTCTTGTTTTTTCTTTCCTGTTGTTGAGATACTAAGTCATAACATCTGCATTGTCAGTGATGTATGAACAAATTTGTCAATCTGGTCTATTGAAAATGTAGCGATTAGTGACCTGTTTGAAGTTCAACTATTTGAGAGATGATTTCCAAAGTAATATCTCTCTTCTTTGGTGTGGATAACATGTTCCAAACCTTTTTAACTTTTTTAAACAACTTGAGAGTTTTAGTATGATTTGTGAGAAAATTCAGAGGCATGTTCCATCATTCTAAGATATGTGAAAATCAATGCAGCAGCAAGTTTGAGAAGAAAGAAATGATCAGGGTTCTCTGTAAGAATTAGCAGTAAAAAAAAGAATATAAGAGGAGTCAACAGAGGAAAACAACTGATTGAAGAGAGACTACAGTCCCAAGATGAACATGTATCCTAGGTCCTTTTGGTTCTAACAGAGAAAGGGTCTTTGGTTTGACTAGTCATCAAACCAGAAGTTGGGTTTCTTCCATTATAAATGTGTAATATAGAATCCTTCCTTTTGATGGGTCACCTCAGGAAGAAAGCGTTTTAATCTTTGAGTAATTGAGACCATACCCCATATAACTGTTAGGTCTAGGTCCTCAACCTTACCACCTTCCTCTGGGGCAATTAGGAACTCCCTCAACTGGAGGACTGTTCCTCAGAGCTGCACTTCAATTGCTGCTGTTTCTCTCAGTAGATGTACAGCTGTTGGGAACTTCAGTGTAAAGGGCATTATAACTCAAAATACATCTATTTCTTCTAATTAAAAGTCTGTTTGGTGGTAATTTTTCATTTAAGGCATGACCTCAAGTTTCCTTCTGAACAACAACTGCACCCCTGGGGATGAGTGGTTGCTCAATACCATCCCCTCTCTAGTCACAGCAGAAGATAATCAGTTTCTTACGGGCCCTCCTAATACGGAATAGTTCAAAAGTTAATTTTTAGCATGTGGGCACGCACTAACCCCCAAAAAGGTCCTCCCCATAGCCTTTAAAGCCTTATTTAGGGTAGATTCTTTTATTTCCTCTGTTCACCCTTTTCATTTTCTTTTGGGTAAGGTAGCAATGTAGCTCCAAATGACTTATTTCTTACTGGTGTTTTCATTGTTCTAGGGATTATTACGCAAGGCACTTAGCAGGGAGATCAAAGTTGGTCAGCCTACAGTTGACATCCTTGAGATAAATCAACTGAGAAGGCAGTTGGTTTTTCATGCTTATCTATGGGACAGACGTTTGATACATCTTTCCAGTTCTCATGGTAAAAATTCCCGAACTCCGGGCAGTTTGACACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAG</genome_strand>
        <mrna_strand>AAGGGCTAATGCGTTGTTTGCTGAGGTGTCCAAAGTTCTTCATGTCAAGTTGGAAAAATTCTCTGTTGATAGCAGCTTGAAAGCACCCAAGACAAGTGAGCAGATCACAGAGATGGAAGAAATATTAGAGAAGGAGAAAACTGAGTTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACGCAAGGCACTTAGCAGGGAGATCAAAGTTGGTCAGCCTACAGTTGACATCCTTGAGATAAATCAACTGAGAAGGCAGTTGGTTTTTCATGCTTATCTATGGGACAGACGTTTGATACATCTTTCCAGTTCTCATGGTAAAAATTCCCGAACTCCGGGCAGTTTGACACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E576695" ref_strand="+" ref_description="SGN-E576695 [59954]">
      <seq>ggcacttagcagggaggtcaaagttggtgagcctgtagttgacatccttgagataaatcgactgagaaggcagttggtttttcatgcttatctatgggacagacgcttgatacatctttccagttctcatggtaaaaattcccaaactcagggcagtttgacacaactgaaggagaaacccctcagctctagtgaggaacttcctgaaaggactacaatttcgagacatggaaaaagtttggggagctatgattcagttcttcagaatgtgaagactgaaataacatctaatgaaggaagacacggtcagattcctgatggggttcatgaaagattgactactgatgagaacctaactcacgggaaagacagcgagcatatttgtgctataagaagtacaggagatggaaatgaacctggaaaaaatgtcagacgcattctttcagatgcaaagttcccttctgtggaaagtttatctgacactcttgatgctgcatggactggtgaaagccacctggctattaaggagcatagcagtgcatttccaggttcgttcgttgtagattcttctgctttgaccggagtttcagcaaatacagatgtcgaaaggtctacgggtgacaaaaatggggctgaaatacctcatttatctgctaagtctgacaacacagattacctgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="97430" stop="98718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97730" g_stop="98418" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E576695" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97730" e_stop="98418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACTTAGCAGGGAGATCAAAGTTGGTCAGCCTACAGTTGACATCCTTGAGATAAATCAACTGAGAAGGCAGTTGGTTTTTCATGCTTATCTATGGGACAGACGTTTGATACATCTTTCCAGTTCTCATGGTAAAAATTCCCGAACTCCGGGCAGTTTGACACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACTGCGAGATTTTCTGTGCTATAAGAAATACAGGAGATGGTAATGTACTGGAACCTGGAAAAAATGTCAGACGTGTTCTTTCAGATGCAAAGTTCCCGTCTGTGGGAAGTTTATCCGACACTCTTGATGCTGCATGGACCGGTGAAAGCCACCTGGCTATTAAAGAGCATAACAGTGCATTTCCAGGTTCGTTCGTTGTAGATTCTACTGCTTTGACTGGAGTTTCAGCAAATACAGATGTCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCT</genome_strand>
        <mrna_strand>GGCACTTAGCAGGGAGGTCAAAGTTGGTGAGCCTGTAGTTGACATCCTTGAGATAAATCGACTGAGAAGGCAGTTGGTTTTTCATGCTTATCTATGGGACAGACGCTTGATACATCTTTCCAGTTCTCATGGTAAAAATTCCCAAACTCAGGGCAGTTTGACACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTACAATTTCGAGACATGGAAAAAGTTTGGGGAGCTATGATTCAGTTCTTCAGAATGTGAAGACTGAAATAACATCTAATGAAGGAAGACACGGTCAGATTCCTGATGGGGTTCATGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACAGCGAGCATATTTGTGCTATAAGAAGTACAGGAGATGG-AA---A-T-GAACCTGGAAAAAATGTCAGACGCATTCTTTCAGATGCAAAGTTCCCTTCTGTGGAAAGTTTATCTGACACTCTTGATGCTGCATGGACTGGTGAAAGCCACCTGGCTATTAAGGAGCATAGCAGTGCATTTCCAGGTTCGTTCGTTGTAGATTCTTCTGCTTTGACCGGAGTTTCAGCAAATACAGATGTCGAAAGGTCTACGGGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E261101" ref_strand="+" ref_description="SGN-E261101 [cLEG-65-G20]">
      <seq>acaactgaaggagaaacccctcagctctagtgaggaacttcctgaaaggactgcaattttgagacctggaaaaagtttggggagctatgattcagctcttcagaatgtgaagactgaaataacatctagtgaaggaagacatggtcagattcctgatggggttcacgaaagattgactactgatgagaacctaactcacgggaaagactgcgagattttctgtgctataagaaatacaggagatggtaatgtactggaacctggaaaaaatgtcagacgtgttctttcagatgcaaagttcccgtctgtgggaagtttatccgacactcttgatgctgcatggaccggtgaaagccacctggctattaaagagcataacagtgcatttccaggttcgttcgttgtagattctactgctttgactggagtttcagcaaatacagatgtcgaaaggtctctgtgtgacaaaaatggggctgaaatacctcatttatctgctaagtctgacaacacagattacctgacctgggcaacggcacatttctcaaatttctatcgttcgttcaacaagaatatcacagcaaatccacaatatgttgctaaattgaatgagcataatcctgtttatatcttgtcgtttagcgaattgctacatcaaggtggtgccaggcttcttacagctggtggtgaaaatgacattgttattccagtttatgatgatgagccgacagtatcatctcatatgcacttgtctcaccagataccgcaatcaaatgtcagatgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="97592" stop="98980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97892" g_stop="98680" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="787" r_length="787" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E261101" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97892" e_stop="98680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACTGCGAGATTTTCTGTGCTATAAGAAATACAGGAGATGGTAATGTACTGGAACCTGGAAAAAATGTCAGACGTGTTCTTTCAGATGCAAAGTTCCCGTCTGTGGGAAGTTTATCCGACACTCTTGATGCTGCATGGACCGGTGAAAGCCACCTGGCTATTAAAGAGCATAACAGTGCATTTCCAGGTTCGTTCGTTGTAGATTCTACTGCTTTGACTGGAGTTTCAGCAAATACAGATGTCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATC</genome_strand>
        <mrna_strand>ACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACTGCGAGATTTTCTGTGCTATAAGAAATACAGGAGATGGTAATGTACTGGAACCTGGAAAAAATGTCAGACGTGTTCTTTCAGATGCAAAGTTCCCGTCTGTGGGAAGTTTATCCGACACTCTTGATGCTGCATGGACCGGTGAAAGCCACCTGGCTATTAAAGAGCATAACAGTGCATTTCCAGGTTCGTTCGTTGTAGATTCTACTGCTTTGACTGGAGTTTCAGCAAATACAGATGTCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGGTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGAC-AGTATCATCTCATATGCACTTGTCTCACCAGA-TACCGCAATCAAATGTCAGATGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E264225" ref_strand="+" ref_description="SGN-E264225 [cLEG-70-C22]">
      <seq>ctgaaggagaaacccctcagctctagtgaggaacttcctgaaaggactgcaattttgagacctggaaaaagtttggggagctatgattcagctcttcagaatgtgaagactgaaataacatctagtgaaggaagacatggtcagattcctgatggggttcacgaaagattgactactgatgagaacctaactcacgggaaagactgcgagattttctgtgctataagaaatacaggagatggtaatgtactggaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="97596" stop="98453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97896" g_stop="98153" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E264225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97896" e_stop="98153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACTGCGAGATTTTCTGTGCTATAAGAAATACAGGAGATGGTAATGTACTGGAACCT</genome_strand>
        <mrna_strand>CTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACTGCGAGATTTTCTGTGCTATAAGAAATACAGGAGATGGTAATGTACTGGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E248090" ref_strand="+" ref_description="SGN-E248090 [cLEF-47-P7]">
      <seq>agctcttcagaatgtgaagactgaaataacatctagtgaaggaagacatggtcagattcctgatggggttcacgaaagattgactactgatgagaacctaactcacgggaaagactgcgagattttctgtgctataagaaatacaggagatggtaatgtactggaacctggaaaaaatgtcagacgtgttctttcagatgcaaagttcccgtctgtgggaagtttatccgacactcttgatgctgcatggaccggtgaaagccacctggctattaaagagcataacagtgcatttccaggttcgttcgttgtagattctactgctttgactggagtttcagcaaatacagatgtcgaaaggtctctgtgtgacaaaaatggggctgaaatacctcatttatctgctaagtctgacaacacagattacctgacctgggcaacggcacatttctcaaatttctatcgttcgttcaacaagaatatcacagcaaatccacaatatgttgctaaattgaatgagcataatcctgtttatatcttgtcgtttagcgaattgctacatcaaggtggtgccaggcttcttacagctgttggtgaaaatgacattgttattccagtttatgatgatgagccgacaagtatcatctcatatgcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="97685" stop="98945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97985" g_stop="98645" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E248090" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97985" e_stop="98645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACTGCGAGATTTTCTGTGCTATAAGAAATACAGGAGATGGTAATGTACTGGAACCTGGAAAAAATGTCAGACGTGTTCTTTCAGATGCAAAGTTCCCGTCTGTGGGAAGTTTATCCGACACTCTTGATGCTGCATGGACCGGTGAAAGCCACCTGGCTATTAAAGAGCATAACAGTGCATTTCCAGGTTCGTTCGTTGTAGATTCTACTGCTTTGACTGGAGTTTCAGCAAATACAGATGTCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTC</genome_strand>
        <mrna_strand>AGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACTGCGAGATTTTCTGTGCTATAAGAAATACAGGAGATGGTAATGTACTGGAACCTGGAAAAAATGTCAGACGTGTTCTTTCAGATGCAAAGTTCCCGTCTGTGGGAAGTTTATCCGACACTCTTGATGCTGCATGGACCGGTGAAAGCCACCTGGCTATTAAAGAGCATAACAGTGCATTTCCAGGTTCGTTCGTTGTAGATTCTACTGCTTTGACTGGAGTTTCAGCAAATACAGATGTCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E244238" ref_strand="+" ref_description="SGN-E244238 [cLEF-37-I17]">
      <seq>agctcttcagaatgtgaagactgaaataacatctagtgaaggaagacatggtcagattcctgatggggttcacgaaagattgactactgatgagaacctaactcacgggaaagactgcgagattttctgtgctataagaaatacaggagatggtaatgtactggaacctggaaaaaatgtcagacgtgttctttcagatgcaaagttcccgtctgtgggaagtttatccgacactcttgatgctgcatggaccggtgaaagccacctggctattaaagagcataacagtgcatttccaggttcgttcgttgtagattctactgctttgactggagtttcagcaaatacagatgtcgaaaggtctctgtgtgacaaaaatggggctgaaatacctcatttatctgctaagtctgacaacacagattacctgacctgggcaacggcacatttctcaaatttctatcgttcgttcaacaagaatatcacagcaaatccacaatatgttgctaaattgaatgagcataatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="97685" stop="98811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97985" g_stop="98511" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E244238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97985" e_stop="98511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACTGCGAGATTTTCTGTGCTATAAGAAATACAGGAGATGGTAATGTACTGGAACCTGGAAAAAATGTCAGACGTGTTCTTTCAGATGCAAAGTTCCCGTCTGTGGGAAGTTTATCCGACACTCTTGATGCTGCATGGACCGGTGAAAGCCACCTGGCTATTAAAGAGCATAACAGTGCATTTCCAGGTTCGTTCGTTGTAGATTCTACTGCTTTGACTGGAGTTTCAGCAAATACAGATGTCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATC</genome_strand>
        <mrna_strand>AGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACTGCGAGATTTTCTGTGCTATAAGAAATACAGGAGATGGTAATGTACTGGAACCTGGAAAAAATGTCAGACGTGTTCTTTCAGATGCAAAGTTCCCGTCTGTGGGAAGTTTATCCGACACTCTTGATGCTGCATGGACCGGTGAAAGCCACCTGGCTATTAAAGAGCATAACAGTGCATTTCCAGGTTCGTTCGTTGTAGATTCTACTGCTTTGACTGGAGTTTCAGCAAATACAGATGTCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E556203" ref_strand="+" ref_description="SGN-E556203 [cTSD-2-L24]">
      <seq>aaaaaaactatagaaaaaaaaaaggaaaaaaagaaaaacaaaagaaaaaaaaaaaaaaataacagtgggtttcccggtgcggtcgttccccattctactgctttgactggagtttcagcaaatacatatgtcaaaaggtctctgtgtgacaaaaatggggctgaaatacctcatttatctgctaagtctgacaacacagattacctgacctgggcaacggcacatttctcaaatttctatcgttcgttcaacaagaatatcacagcaaatccacaatatgttgctaaattgaatgagcataatcctgtttatatcttgtcgtttagcgaattgctacatcaaggtggtgccaggcttcttacagctgttggtgaaaatgacattgttattccagtttatgatgatgagccgacaagtatcatctcatatgcacttgtctcaccagattaccgcaatcaaatgtcagatgaatctcaaaacctgaaagaaaatcacaagttttcagcttctttgtcatttctggattcattaaatctacttccgcttcactctgtggatggagtagtttcggaatctccaagaagttttggatctaccaacgaaagcatgtcatcgggttatagttctcgcagctcaaacatggatccaccagcatatattaatgctttgcatgcccgaatatctttctcagatgatggccctcctggaaaggttaagtacacagtcacctgctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="97999" stop="99244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98265" g_stop="98944" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="737" r_length="680" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E556203" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98265" e_stop="98944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAACAGTGCATTTCCAGGTTCGTTCGTTGTAGATTCTACTGCTTTGACTGGAGTTTCAGCAAATACAGATGTCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAAGTTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTA</genome_strand>
        <mrna_strand>AATAACAGTGGGTTTCCCGGTGCGGTCGTTCCCCATTCTACTGCTTTGACTGGAGTTTCAGCAAATACATATGTCAAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAAGTTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E252657" ref_strand="+" ref_description="SGN-E252657 [cLEG-16-A11]">
      <seq>caaatacagatgtcgaaaggtctctgtgtgacaaaaatggggctgaaatacctcatttatctgctaagtctgacaacacagattacctgacctgggcaacggcacatttctcaaatttctatcgttcgttcaacaagaatatcacagcaaatccacaatatgttgctaaattgaatgagcataatcctgtttatatcttgtcgtttagcgaattgctacatcaaagtggtgccaggcttcttacagctgttggtgaaaatgacattgttattccagtttatgatgatgagccgacaagtatcatctcatatgcacttgtctcaccagattaccgcaatcaaatgtcagatgaatctcaaaacctgaaagaaaatcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98026" stop="99004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98326" g_stop="98704" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E252657" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98326" e_stop="98704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATACAGATGTCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAA</genome_strand>
        <mrna_strand>CAAATACAGATGTCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAAGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E333991" ref_strand="+" ref_description="SGN-E333991 [cTOD-24-G9]">
      <seq>tcgaaaggtctctgtgtgacaaaaatggggctgaaatacctcatttatctgctaagtctgacaacacagattacctgacctgggcaacggcacatttctcaaatttctatcgttcgttcaacaagaatatcacagcaaatccacaatatgttgctaaattgaatgagcataatcctgtttatatcttgtcgtttagcgaattgctacatcaaggtggtgccaggcttcttacagctgttggtgaaaatgacattgttattccagtttatgatgatgagccgacaagtatcatctcatatgcacttgtctcaccagattaccgcaatcaaatgtcagatgaatctcaaaacctgaaagaaaatcacaagttttcagcttctttgtcatttctggattcattaaatctacttccgcttcactctgtggatggagtagtttcggaatctccaagaagttttggatctaccaacgaaagcatgtcatcgggttatagttctcgcagctcaaacatggatccaccagcatatattaatgctttgcatgcccgaatatctttctcagatgatggccctcctggaaaggttaagtacacagtcacctgctattatgcgaagcaattcgagaccttgagaaagtcttgttgccccaatgaatcagactttatacgttcccttagccgatgcaaaaaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98038" stop="99330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98338" g_stop="99030" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E333991" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98338" e_stop="99030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAAGTTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGG</genome_strand>
        <mrna_strand>TCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAAGTTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E459449" ref_strand="+" ref_description="SGN-E459449 [cPRO-27-L20]">
      <seq>cctgacctgggcaacggaacatttctcaaatttctattcttccttcaacaagaatatcacagcaaatccacaatatgttgctaaattgaatgagcataatcctgtttatatcttgtcgtttagcgaattgcaacatcaaggtggtgccaggcttcttatggctgttggtgaaaatgacattgttattccagtttatgatgatgagccaacaagtatcatctcatatgcacttgtctcaccagattaccgcaatcaaatgtcggatgaatctcaaaacctgaaagaaaatcacaaattttcagcttctttgtcgtttctggattcattaaatctactttcgcttcactctgtggatgaaatagtttcggaatccccaagaagttttggttctaccaacgaaagcatgtcatcgggtctcagttctcgcaactcaaacatggatccacctgcatatattaatgctttgcatgcccgaatatctttctcagatgatggccctcttggaaaggttaagtacacagtcacctgctattatgcgaagcaatttgagaccttgagaaagtcttgttgcccctgtgaatcagacttcatacgttcccttagccgatgcaaaaaatggggtgctcagggtgggaagagcaatgttttctttgccaaaaccttggacgaccgatttatcatcaagcaggtaacaaagacagagttggagtcgtttatcaagtttgcaccagcttactttaagtatttatccgactncatagctagtgggagcccaacttgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98111" stop="99494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98411" g_stop="99194" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E459449" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98411" e_stop="99194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAAGTTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAATAGCTAGTGGGAGCCCAACTTGCTTG</genome_strand>
        <mrna_strand>CCTGACCTGGGCAACGGAACATTTCTCAAATTTCTATTCTTCCTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCAACATCAAGGTGGTGCCAGGCTTCTTATGGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCAACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCGGATGAATCTCAAAACCTGAAAGAAAATCACAAATTTTCAGCTTCTTTGTCGTTTCTGGATTCATTAAATCTACTTTCGCTTCACTCTGTGGATGAAATAGTTTCGGAATCCCCAAGAAGTTTTGGTTCTACCAACGAAAGCATGTCATCGGGTCTCAGTTCTCGCAACTCAAACATGGATCCACCTGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCTTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTTGAGACCTTGAGAAAGTCTTGTTGCCCCTGTGAATCAGACTTCATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACAAAGACAGAGTTGGAGTCGTTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCCGACTNCATAGCTAGTGGGAGCCCAACTTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E459418" ref_strand="+" ref_description="SGN-E459418 [cPRO-27-F20]">
      <seq>cctgacctgggcaacggaacatttctcaaatttctattcttccttcaacaagaatatcacagcaaatccacaatatgttgctaaattgaatgagcataatcctgtttatatcttgtcgtttagcgaattgcaacatcaaggtggtgccaggcttcttatggctgttggtgaaaatgacattgttattccagtttatgatgatgagccaacaagtatcatctcatatgcacttgtctcaccagattaccgcaatcaaatgtcggatgaatctcaaaacctgaaagaaaatcacaaattttcagcttctttgtcgtttctggattcattaaatctactttcgcttcactctgtggatgaaatagtttcggaatccccaagaagttttggttctaccaacgaaagcatgtcatcgggtctcagttctcgcaactcaaacatggatccacctgcatatattaatgctttgcatgcccgaatatctttctcagatgatggccctcttggaaaggttaagtacacagtcacctgctattatgcgaagcaatttgagaccttgagaaagtcttgttgcccctgtgaatcagacttcatacgttcccttagccgatgcaaaaaatggggtgctcagggtgggaagagcaatgttttctttgccaaaaccttggacgaccgatttatcatcaagcaggtaacaaagacagagttggagtcgtttatcaagtttgcaccagcttactttaagtatttatccgactncatagctagtgggagcccaacttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98111" stop="99493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98411" g_stop="99193" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="783" r_length="783" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E459418" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98411" e_stop="99193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAAGTTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAATAGCTAGTGGGAGCCCAACTTGCTT</genome_strand>
        <mrna_strand>CCTGACCTGGGCAACGGAACATTTCTCAAATTTCTATTCTTCCTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCAACATCAAGGTGGTGCCAGGCTTCTTATGGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCAACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCGGATGAATCTCAAAACCTGAAAGAAAATCACAAATTTTCAGCTTCTTTGTCGTTTCTGGATTCATTAAATCTACTTTCGCTTCACTCTGTGGATGAAATAGTTTCGGAATCCCCAAGAAGTTTTGGTTCTACCAACGAAAGCATGTCATCGGGTCTCAGTTCTCGCAACTCAAACATGGATCCACCTGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCTTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTTGAGACCTTGAGAAAGTCTTGTTGCCCCTGTGAATCAGACTTCATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACAAAGACAGAGTTGGAGTCGTTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCCGACTNCATAGCTAGTGGGAGCCCAACTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E602914" ref_strand="+" ref_description="SGN-E602914 [55990]">
      <seq>ctcaaatttctatcgttccttcaacaagaatatcacagcaaatccacaatatgttgctaaattgaatgagcataatcctgtttatatcttgtcgtttagcgaattgcaacatcaaggtggtgccaggcttcttatggctgttggtgaaaatgacattgttattccagtttatgatgatgagccaacaagtatcatctcatatgcacttgtctcaccagattaccgcaatcaaatgtcggatgaatctcaaaacctgaaagaaaatcacaaattttcagcttctttgtcatttctggattcattaaatctactttcgcttcactctgtggatgaaatagtttcggaatccccaagaagttttggttctaccaacgaaagcatgtcatcgggtctcagttctcgcaactcaaacatggatccacctgcatatattaatgctttgcatgcccgaatatctttctcagatgatggccctcttggaaaggttaagtacacagtcacctgctattatgcgaagcaatttgagaccttgagaaagtcttgttgcccctgtgaatcagacttcatacgttccctttgccgatgcaaaaaatggggtgctcagggtgggaagagcaatgttttctttgccaaaaccttggacgaccgatttatcatcaagcaggtaacaaagacagagttggagtcgtttatcaagtttgcaccagcttactttaagtattatccgactcaatagctagtgggagcccaacttgcttggcaagattctggggatctaccacgttacatcaaagcatctcaaatgtgggaaaagaatcacgaatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98135" stop="104555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98435" g_stop="99218" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99219" i_stop="104210" i_length="4992">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104211" g_stop="104255" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="828" r_length="46" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E602914" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98435" e_stop="99218"/>
          <exon e_start="104211" e_stop="104255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAAGTTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAGGTATGCTGTATATCATTTCTAAGTAACCAAAGTCATTGTTATAATCAGTATTTTCAGCTTTCTGATATCTATGTGCAGTGGAGCACTATTATTCTGGTGAAGCAGTCTGGGGTTGTAATTGTTAGCCAATTTGGCGTTTTTTCAGCTTATTATTATTTTACTGTTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGCTAGACTTAGTCAACTTTAATTGCTCAACTTTCTGAAGTTAGTGGCCCCATTATGGTTGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTTAGTTTTAATGTTTATGTTTTTTACTTGTATAAATTTAGACATTCTGCAGATTAATATACACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAATAGTGGCATCAGAGCCTCTAGTTGATCTTACAAGACAAAAAAAAAGTTTTAACCTACAACACAAATGGCATCCAACAACCTACCTTTAAATCCACCATTCACTTTCACTGGTGAAAATTACCGACTCGGGTCTGTGAAGATGCAAGCTTTTTTGGAAGCCTATAAACTTTGGGAAATCATGACGGAAGATAAACCACTTGCTGCTCTACCAGCAAATCCTACCTTGGCTCAGATCAAATCCAACAACGAAGAGAAGACAAAGAAATCTAAAGCCAAGTCGCTTATGCAGAATGCTGTGGCAGATACTGTGTTTTACAGAATCATGGCTTGCAAAGCTGCAAAAGAGACTTGGGATAGGTTGAAAGAAGAATATCAAGGCAGCGATAGAACACATCAAATGCAAGTGGAACCTAAAAAGAGAGTTTGAGTCTTTGAATATGCAGGAGGATGAAACTATTAGTAAGTATGCTGATCGAATATCCTTAATTGTTAATAACATTAGACTTTTTGGTGAAGAATTTACAGACAAACGAATTGTGGAGAAAGTTCTTGTGACTCTTCCTGAGAGATTTGAATCTAAGATTTCCTCTCTTGAAGAATCCAAGGACCTGAGCAAACTTTCATTAGGTGAACTAATGAGTGCTCTTCAAGCTCAAGAGCAAAGGAGGACTATGAGACGGGAAAAGTTCATTGAAGGAGCTTTCTCTGTACAAAAGCAAAAAGGAAAGCAACAATTCCACCAAAAGAATAAGGGCAAGCATGATTGAGGAAACAATAGTGGAGATGTGAAGCAGAAGTTCCCTCCTTGCAAACATTGTAAAAGAAATACACATCTGGAGAAGTATTGTTGGTGGAGAGTCGATGCTATATGTGGCAATTGTAAGTAGACGGGACACGTATCCAAGGTTTGCAAATCAAGAGCAAAGGCCTCTGGTGCTTTGCAAGAACAAGTAGCAGAAACTGACGATGCACATGAAGAGCAACTATTTGCAGTTTCCTACTTTTCAATCAGTGAATCCTCTGATTCATGGCTTCTTGACAGTGGTTGCACAAATCACTTGTGCAACAAACTACTCAAATTCCTAGATGATACTTACAAATCTAAAGTAAAAGTGGGAAACAGTGAGGCAGTAGAAGTCAAAGGCAGAGGTACAGTGTCTATCTCAACAATATCAGGTATCAAAACTATTTCTGATGTTTTGTACACACCTGATATGAGTCAAAATTTGTTGAGTGTTGGACAGATGCTTGAAAATAATTATTCTCTGTATTTTAAGAATCGTGAATGTGTTGTTTCCGACCCTTCTGGAGTAGAGTTATTCTATGTCAAGATGAGCAACATAATGTTTTCAATTGATTGGGAGAAAATAACAGAGCAGGCTTACACTATTACTTCACAAACATGTACAAACCTATGGCACAAAATACAAACCTATGGCACAAAAGGTTTGGTCACTTCAATCTGAGAAGCATCGCCGAGATGAAAAAGAAGGAGCTAGTGGAAAATATGCCTGAATTTCTTTCTAATGCTCAAGTTTGTGAAACTTGCCAACAGGGAAAGCAACCAAAATTGCCATTTCAAGCAAATCAAGTACGAAGAGCTAACCAGAAACTTCAGCTCATTCATATGGATGTTTGCGGCCCAATGAAAACAGATTCGTTGAGTGGTAACAGATACTTTCTCCTCTTTATTGATGACTACAACAGAATGTGTTGGGTTTATTTCATAAGACTGAAGAGTGAAGTCTTTGATGTTTTTAAACAATTTAAAGCTTTAGTAGAAAATCAATGTAATCTTAGTATTAAGGCTTTAAGGTCTGACAATGGAGGAGAATACACTTCTTCTCAATTTGTGGAAAACAAGGTCTGACAACAGAGGAGAATACACTTCTTCTCAATTTGTGGAGTTTTGTAATAGCACAGGTATTGAACGCCAATTGACATTACCATACACTCCACAACTAAATGGCGTGTGAGAAAGGAAGAACAGGACAGTAATGGAGATGGCCATATGTCTTTTGCTCGAAAGAAAGATCCCAAATCAGTTTTGGGCTGAGGCAGTCAATATCTTTGTATATTTGCTGAACAGATTGCCTACTAAGGCCTTGCAGGACATGACTCCATATGAAGCTTGGTGTGGGAACAAACCATCAATACACCATCTCAGAATCTTTGGGTGTATATGTTATTATCGAGTTCCAGAAACAAAAAGGAGTAAGCTGGATAACAAGGCTTATAAAGGCATATTTATGGGCTATAGTTCATCCAAAGGTTACAAAATTTTCTGTTTTAAATCAGACAAACTAATTCTCAGCCGAGAAGTGAAGTTTGATGAAGCAGTTGGTTGGGATTGGATCAGAAGACCTCTTATTCTGATTCATTTTCAATAGAGCAGCCTCAACTTTCAGAAGATGAACTAGTGGATGATGTACCAGTGAGGGGAACTCGATCCTTAAAAGATGTCTATCAGCGGTATAACTTGGTTAGCTCTGAACCAACAAGCTATGCTGAAGCACAAGACTCTCAGGCATGGAGAAGAGCTATGCAAGAAGAACTAGACATGATCGAGAAGAATGGAACCTGACAGCTTGTTGACAGACCTAGAAATCGCAAGGTAATTGGTGTAAAATGGATTTTAAGACAAAACTCAATCCTGATGGAACAATTTGCAAACATAAGGCTAGATTGGTGGTGAAGGGATATGCACAACAATATGTGTGGATTACCAGGAAACATTTGCTCTTGTAGCAAGGTTTGCTTGCTCAACTACTGGAAAAGAGGATCAAGTTTATCTCTTAACAAAGGCTTTGTATGGCCTAAAACAAGCCCGAAGGGCATGGTATGAGAGGATGGACAATCATCTCATCCAACTTGGCTTTAGTAGAAGTCAAGTGAAGCTACTTTATATGTGAAAGTCAATGCTGCAGGTGAGTCCTTAATTGTCTCAATTTATGTGGATGACATGCTTGTGACAGGAAGCAAAATTGAACTAATCCAAAGGTTCAAGGATGAAATGGAGAAAATCTTTGGAATGACTGATCTTGGAGTCATGAAGTACTTTCTCGGCATGGAAGTGTTGCAATCCAGTGATGGAATTTTTATATGCCAGCAGAAATACATTTCGGATATTCTAAACAGGTTCAAAATGCAAGACTGCAAACCTGTGAGTACTCCAATATCTATTGGTGTGAAGCTTGCCAAGGATGAGGATTCCGAAAAAGAGGATGATAGTATGTATAGAAGCTTAATTGGCAGTCTTCTATATCTAACCGCAAGCAGGCCTGTCATTCTATTTGTTGTTAGTTTGCTCTCTAGGTTCATGCATTCACCTAGAGACACACACCTCACAGCTGCTAAAAGAGTGTTAAGGTATATTAAAGGAACCAACAAGTTTGGAATTTTTTTCCCAAACATCTGCCGAAGTAACTATGAACTTGATCGGGTACTTTGATAGTGATTGGGGTGGTGGAGTTGATGATTCCAGAAGCACATCTGGATATCTTTTCTGTTTGGGGACAAGTTGTTTTAGTTGGAGCTCTAGAAAACAAGAAACTACAGCTCAATCAACAGCAGAAGCTGAGTACATAGCTGCTGCATCTGCTGTGAATCGAGTTATCTGGCTAAGGAAGATGATGATGGACTTAGGCCATAAGCTACCAAGATCATGTGTGACAACAGTTCAGCAGTTTCAATCTAAAAAAATCCAGTGTTTTATGGTCGAACTAAACATATCAAGATCAAGTTTCATTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTAGTTTTAATGTTTATGTTTTTTCTTTGTATAAATTCAGACTTTCTGCAGATTAATATATACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAACAGTAACTAAGTTGTGTCTGTGGGTTATTATGTCCATCTGGTCTTCTATTGCAACTTCTTATTGTCAAAATATTTGAAGAATGTGTAAGATTATCATTGTTAAGCCTCCCATTTTAAAGTCACTTATTTTTCTTGATTGAGCTAATTTTCCAACATAGTCAGTCCTGTGCTTCAGAGGTGCTCCTAGCTGTACCCTAAATAAAACTAGGAGGTCACCCAAAAAAGTAGTATAAATTGGTTCATAAGATGGATCTAGCTTCTGCACTTTGCACTGCCCTTGAAATATTTTCTTTACAAAAGATGATGCCCTGAAATTTATATGCTCTCCAATTTTTAACTGCATTATTGGATGTTTGTTAGGTTACATCAAAGCATCTCAAAGGTGGG-AAAGAATCAAGAATGGAT</genome_strand>
        <mrna_strand>CTCAAATTTCTATCGTTCCTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCAACATCAAGGTGGTGCCAGGCTTCTTATGGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCAACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCGGATGAATCTCAAAACCTGAAAGAAAATCACAAATTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTTCGCTTCACTCTGTGGATGAAATAGTTTCGGAATCCCCAAGAAGTTTTGGTTCTACCAACGAAAGCATGTCATCGGGTCTCAGTTCTCGCAACTCAAACATGGATCCACCTGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCTTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTTGAGACCTTGAGAAAGTCTTGTTGCCCCTGTGAATCAGACTTCATACGTTCCCTTTGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACAAAGACAGAGTTGGAGTCGTTTATCAAGTTTGCACCAGCTTACTTTAAGTA-TTATCCGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGC-AAGATTCTGGGGATCTACCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACATCAAAGCATCTCAAATGTGGGAAAAGAATCACGAATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E570570" ref_strand="+" ref_description="SGN-E570570 [15175]">
      <seq>gaagatgacattgttattccagtttatgatgatgagccaacaagtatcatctcatatgcacttgtctcaccagattaccgcaatcaaatgtcggatgaatctcaaaacctgaaagaaaatcacaaattttcagcttctttgtcgtttctggattcattaaatctactttcgcttcactctgtggatgaaatagtttcggaatccccaagaagttttggttctaccaacgaaagcatgtcatcgggtctctgttctcgcaactcaaacatggatccacctgctgctttgcatgcccgaatatctttctcagatgatggccctcttggaaaggttaagtacacagtcacctgctattatgcaaagcaatttgagaccttgagaaagtcttgttgcccctgtgaatcagacttcatacgttcccttagccgatgcagaaaaattggggtgctcagggtgggaagagccatgttttctttgccaaaaccttggacgaccgatttatcatcacagcaggtaacaaagacagagttggaggtcggtttaatccacggtttgcaccagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98280" stop="99445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98580" g_stop="99118" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E570570" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98580" e_stop="99118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAAGTTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCA-AAAAA-TGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCA-AGCAGGTAACGAAGACAGAGTTGGA</genome_strand>
        <mrna_strand>GAAGATGACATTGTTATTCCAGTTTATGATGATGAGCCAACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCGGATGAATCTCAAAACCTGAAAGAAAATCACAAATTTTCAGCTTCTTTGTCGTTTCTGGATTCATTAAATCTACTTTCGCTTCACTCTGTGGATGAAATAGTTTCGGAATCCCCAAGAAGTTTTGGTTCTACCAACGAAAGCATGTCATCGGGTCTCTGTTCTCGCAACTCAAACATGGATCCACCTGC---------TGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCTTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCAAAGCAATTTGAGACCTTGAGAAAGTCTTGTTGCCCCTGTGAATCAGACTTCATACGTTCCCTTAGCCGATGCAGAAAAATTGGGGTGCTCAGGGTGGGAAGAGCCATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCACAGCAGGTAACAAAGACAGAGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E575819" ref_strand="+" ref_description="SGN-E575819 [35504]">
      <seq>tgatgagccaacaagtatcatctcatatgcacttgtctcaccagattaccgcaatcaaatgtcggatgaatctcaaaacctgaaagaaaatcacaaattttcagcttctttgtcgtttctggattcattaaatctactttcgcttcactctgtggatgaaatagtttcggaatccccaagaagttttggttctaccaacgaaagcatgtcatcgggtctctgttctcgcaactcaaacatggatccacctgctgctttgcatgcccgaatatctttctcagatgatggccctcttggaaaggttaagtacacagtcacctgctattatgcaaagcaatttgagaccttgagaaagtcttgttgcccctgtgaatcagacttcatacgttcccttagccgatgcaaaaaatggggtgctcagggtgggaagagccatgttttctttgccaaaaccttggacgaccgatttatcatcaagcaggtaacaaagacagagttggagtcgtttatcaagtttgcaccagcttactttaagtatttatccgactcaatagctagtgggagcccaacttgcttggcaaagattctggggatctaccaggttacatcaaagcatctcaaaggtgggaaagaatcaagaatggatgtgcttgttatggaaaatcttctttttaagcgcaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98309" stop="104593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98609" g_stop="99218" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99219" i_stop="104210" i_length="4992">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104211" g_stop="104293" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="685" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E575819" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98609" e_stop="99218"/>
          <exon e_start="104211" e_stop="104293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAAGTTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAGGTATGCTGTATATCATTTCTAAGTAACCAAAGTCATTGTTATAATCAGTATTTTCAGCTTTCTGATATCTATGTGCAGTGGAGCACTATTATTCTGGTGAAGCAGTCTGGGGTTGTAATTGTTAGCCAATTTGGCGTTTTTTCAGCTTATTATTATTTTACTGTTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGCTAGACTTAGTCAACTTTAATTGCTCAACTTTCTGAAGTTAGTGGCCCCATTATGGTTGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTTAGTTTTAATGTTTATGTTTTTTACTTGTATAAATTTAGACATTCTGCAGATTAATATACACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAATAGTGGCATCAGAGCCTCTAGTTGATCTTACAAGACAAAAAAAAAGTTTTAACCTACAACACAAATGGCATCCAACAACCTACCTTTAAATCCACCATTCACTTTCACTGGTGAAAATTACCGACTCGGGTCTGTGAAGATGCAAGCTTTTTTGGAAGCCTATAAACTTTGGGAAATCATGACGGAAGATAAACCACTTGCTGCTCTACCAGCAAATCCTACCTTGGCTCAGATCAAATCCAACAACGAAGAGAAGACAAAGAAATCTAAAGCCAAGTCGCTTATGCAGAATGCTGTGGCAGATACTGTGTTTTACAGAATCATGGCTTGCAAAGCTGCAAAAGAGACTTGGGATAGGTTGAAAGAAGAATATCAAGGCAGCGATAGAACACATCAAATGCAAGTGGAACCTAAAAAGAGAGTTTGAGTCTTTGAATATGCAGGAGGATGAAACTATTAGTAAGTATGCTGATCGAATATCCTTAATTGTTAATAACATTAGACTTTTTGGTGAAGAATTTACAGACAAACGAATTGTGGAGAAAGTTCTTGTGACTCTTCCTGAGAGATTTGAATCTAAGATTTCCTCTCTTGAAGAATCCAAGGACCTGAGCAAACTTTCATTAGGTGAACTAATGAGTGCTCTTCAAGCTCAAGAGCAAAGGAGGACTATGAGACGGGAAAAGTTCATTGAAGGAGCTTTCTCTGTACAAAAGCAAAAAGGAAAGCAACAATTCCACCAAAAGAATAAGGGCAAGCATGATTGAGGAAACAATAGTGGAGATGTGAAGCAGAAGTTCCCTCCTTGCAAACATTGTAAAAGAAATACACATCTGGAGAAGTATTGTTGGTGGAGAGTCGATGCTATATGTGGCAATTGTAAGTAGACGGGACACGTATCCAAGGTTTGCAAATCAAGAGCAAAGGCCTCTGGTGCTTTGCAAGAACAAGTAGCAGAAACTGACGATGCACATGAAGAGCAACTATTTGCAGTTTCCTACTTTTCAATCAGTGAATCCTCTGATTCATGGCTTCTTGACAGTGGTTGCACAAATCACTTGTGCAACAAACTACTCAAATTCCTAGATGATACTTACAAATCTAAAGTAAAAGTGGGAAACAGTGAGGCAGTAGAAGTCAAAGGCAGAGGTACAGTGTCTATCTCAACAATATCAGGTATCAAAACTATTTCTGATGTTTTGTACACACCTGATATGAGTCAAAATTTGTTGAGTGTTGGACAGATGCTTGAAAATAATTATTCTCTGTATTTTAAGAATCGTGAATGTGTTGTTTCCGACCCTTCTGGAGTAGAGTTATTCTATGTCAAGATGAGCAACATAATGTTTTCAATTGATTGGGAGAAAATAACAGAGCAGGCTTACACTATTACTTCACAAACATGTACAAACCTATGGCACAAAATACAAACCTATGGCACAAAAGGTTTGGTCACTTCAATCTGAGAAGCATCGCCGAGATGAAAAAGAAGGAGCTAGTGGAAAATATGCCTGAATTTCTTTCTAATGCTCAAGTTTGTGAAACTTGCCAACAGGGAAAGCAACCAAAATTGCCATTTCAAGCAAATCAAGTACGAAGAGCTAACCAGAAACTTCAGCTCATTCATATGGATGTTTGCGGCCCAATGAAAACAGATTCGTTGAGTGGTAACAGATACTTTCTCCTCTTTATTGATGACTACAACAGAATGTGTTGGGTTTATTTCATAAGACTGAAGAGTGAAGTCTTTGATGTTTTTAAACAATTTAAAGCTTTAGTAGAAAATCAATGTAATCTTAGTATTAAGGCTTTAAGGTCTGACAATGGAGGAGAATACACTTCTTCTCAATTTGTGGAAAACAAGGTCTGACAACAGAGGAGAATACACTTCTTCTCAATTTGTGGAGTTTTGTAATAGCACAGGTATTGAACGCCAATTGACATTACCATACACTCCACAACTAAATGGCGTGTGAGAAAGGAAGAACAGGACAGTAATGGAGATGGCCATATGTCTTTTGCTCGAAAGAAAGATCCCAAATCAGTTTTGGGCTGAGGCAGTCAATATCTTTGTATATTTGCTGAACAGATTGCCTACTAAGGCCTTGCAGGACATGACTCCATATGAAGCTTGGTGTGGGAACAAACCATCAATACACCATCTCAGAATCTTTGGGTGTATATGTTATTATCGAGTTCCAGAAACAAAAAGGAGTAAGCTGGATAACAAGGCTTATAAAGGCATATTTATGGGCTATAGTTCATCCAAAGGTTACAAAATTTTCTGTTTTAAATCAGACAAACTAATTCTCAGCCGAGAAGTGAAGTTTGATGAAGCAGTTGGTTGGGATTGGATCAGAAGACCTCTTATTCTGATTCATTTTCAATAGAGCAGCCTCAACTTTCAGAAGATGAACTAGTGGATGATGTACCAGTGAGGGGAACTCGATCCTTAAAAGATGTCTATCAGCGGTATAACTTGGTTAGCTCTGAACCAACAAGCTATGCTGAAGCACAAGACTCTCAGGCATGGAGAAGAGCTATGCAAGAAGAACTAGACATGATCGAGAAGAATGGAACCTGACAGCTTGTTGACAGACCTAGAAATCGCAAGGTAATTGGTGTAAAATGGATTTTAAGACAAAACTCAATCCTGATGGAACAATTTGCAAACATAAGGCTAGATTGGTGGTGAAGGGATATGCACAACAATATGTGTGGATTACCAGGAAACATTTGCTCTTGTAGCAAGGTTTGCTTGCTCAACTACTGGAAAAGAGGATCAAGTTTATCTCTTAACAAAGGCTTTGTATGGCCTAAAACAAGCCCGAAGGGCATGGTATGAGAGGATGGACAATCATCTCATCCAACTTGGCTTTAGTAGAAGTCAAGTGAAGCTACTTTATATGTGAAAGTCAATGCTGCAGGTGAGTCCTTAATTGTCTCAATTTATGTGGATGACATGCTTGTGACAGGAAGCAAAATTGAACTAATCCAAAGGTTCAAGGATGAAATGGAGAAAATCTTTGGAATGACTGATCTTGGAGTCATGAAGTACTTTCTCGGCATGGAAGTGTTGCAATCCAGTGATGGAATTTTTATATGCCAGCAGAAATACATTTCGGATATTCTAAACAGGTTCAAAATGCAAGACTGCAAACCTGTGAGTACTCCAATATCTATTGGTGTGAAGCTTGCCAAGGATGAGGATTCCGAAAAAGAGGATGATAGTATGTATAGAAGCTTAATTGGCAGTCTTCTATATCTAACCGCAAGCAGGCCTGTCATTCTATTTGTTGTTAGTTTGCTCTCTAGGTTCATGCATTCACCTAGAGACACACACCTCACAGCTGCTAAAAGAGTGTTAAGGTATATTAAAGGAACCAACAAGTTTGGAATTTTTTTCCCAAACATCTGCCGAAGTAACTATGAACTTGATCGGGTACTTTGATAGTGATTGGGGTGGTGGAGTTGATGATTCCAGAAGCACATCTGGATATCTTTTCTGTTTGGGGACAAGTTGTTTTAGTTGGAGCTCTAGAAAACAAGAAACTACAGCTCAATCAACAGCAGAAGCTGAGTACATAGCTGCTGCATCTGCTGTGAATCGAGTTATCTGGCTAAGGAAGATGATGATGGACTTAGGCCATAAGCTACCAAGATCATGTGTGACAACAGTTCAGCAGTTTCAATCTAAAAAAATCCAGTGTTTTATGGTCGAACTAAACATATCAAGATCAAGTTTCATTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTAGTTTTAATGTTTATGTTTTTTCTTTGTATAAATTCAGACTTTCTGCAGATTAATATATACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAACAGTAACTAAGTTGTGTCTGTGGGTTATTATGTCCATCTGGTCTTCTATTGCAACTTCTTATTGTCAAAATATTTGAAGAATGTGTAAGATTATCATTGTTAAGCCTCCCATTTTAAAGTCACTTATTTTTCTTGATTGAGCTAATTTTCCAACATAGTCAGTCCTGTGCTTCAGAGGTGCTCCTAGCTGTACCCTAAATAAAACTAGGAGGTCACCCAAAAAAGTAGTATAAATTGGTTCATAAGATGGATCTAGCTTCTGCACTTTGCACTGCCCTTGAAATATTTTCTTTACAAAAGATGATGCCCTGAAATTTATATGCTCTCCAATTTTTAACTGCATTATTGGATGTTTGTTAGGTTACATCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGC-AACAT</genome_strand>
        <mrna_strand>TGATGAGCCAACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCGGATGAATCTCAAAACCTGAAAGAAAATCACAAATTTTCAGCTTCTTTGTCGTTTCTGGATTCATTAAATCTACTTTCGCTTCACTCTGTGGATGAAATAGTTTCGGAATCCCCAAGAAGTTTTGGTTCTACCAACGAAAGCATGTCATCGGGTCTCTGTTCTCGCAACTCAAACATGGATCCACCTGC---------TGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCTTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCAAAGCAATTTGAGACCTTGAGAAAGTCTTGTTGCCCCTGTGAATCAGACTTCATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCCATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACAAAGACAGAGTTGGAGTCGTTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCCGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACATCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E279726" ref_strand="+" ref_description="SGN-E279726 [cLER-5-D14]">
      <seq>ttttcagcttctttgtcatttctggattcattaaatctacttccgcttcactctgtggatggagtagtttcggaatctccaagaagttttggatctaccaacgaaagcatgtcatcgggttatagttctcgcagctcaaacatggatccaccagcatatattaatgctttgcatgcccgaatatctttctcagatgatggccctcctggaaaggttaagtacacagtcacctgctattatgcgaagcaattcgagaccttgagaaagtcttgttgccccaatgaatcagactttatacgttcccttagccgatgcaaaaaatggggtgctcagggtgggaagagcaatgttttctttgccaaaaccttggacgaccgatttatcatcaagcaggtaacgaagacagagttggagtcatttatcaagtttgcaccagcttactttaagtatttatctgactcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98406" stop="99469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98706" g_stop="99169" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E279726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98706" e_stop="99169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAAT</genome_strand>
        <mrna_strand>TTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E704949" ref_strand="+" ref_description="SGN-E704949 [FA25CH10]">
      <seq>gtagtttcggaatctccaagaagttttggatctaccaacgaaagcatgtcatcgggttatagttctcgcagctcaaacatggatccaccagcatatattaatgctttgcatgcccgaatatctttctcagatgatggccctcctggaaaggttaagtacacagtcacctgctattatgcgaagcaattcgagaccttgagaaagtcttgttgccccaatgaatcagactttatacgttcccttagccgatgcaaaaaatggggtgctcagggtgggaagagcaatgttttctttgccaaaaccttggacgaccgatttatcatcaagcaggtaacgaagacagagttggagtcatttatcaagtttgcaccagcttactttaagtatttatctgactcaatagctagtgggagcccaacttgcttggcaaagattctggggatctaccaggttacatcaaagcatctcaaaggtgggaaagaatcaagaatggatgtgcttgttatggaaaatcttctttttaagcgcaacatcactagactgtatgacctcaaagggtcgtctcgatcacgctataatccagattcaagtggaactaacacagttttacttgatcagaacttgattgaagcaatgccaacttctccgatttttgtgggaacgcaagctaagcggctgctgcagagagctgtgtggaatgatacttcatttctagcgtcaatagatgtgatgcattactcattactagttggggtggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98469" stop="105235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98769" g_stop="99218" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99219" i_stop="104210" i_length="4992">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104211" g_stop="104477" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="717" r_length="267" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104478" i_stop="104892" i_length="415">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104893" g_stop="104935" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="760" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E704949" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98769" e_stop="99218"/>
          <exon e_start="104211" e_stop="104477"/>
          <exon e_start="104893" e_stop="104935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAGGTATGCTGTATATCATTTCTAAGTAACCAAAGTCATTGTTATAATCAGTATTTTCAGCTTTCTGATATCTATGTGCAGTGGAGCACTATTATTCTGGTGAAGCAGTCTGGGGTTGTAATTGTTAGCCAATTTGGCGTTTTTTCAGCTTATTATTATTTTACTGTTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGCTAGACTTAGTCAACTTTAATTGCTCAACTTTCTGAAGTTAGTGGCCCCATTATGGTTGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTTAGTTTTAATGTTTATGTTTTTTACTTGTATAAATTTAGACATTCTGCAGATTAATATACACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAATAGTGGCATCAGAGCCTCTAGTTGATCTTACAAGACAAAAAAAAAGTTTTAACCTACAACACAAATGGCATCCAACAACCTACCTTTAAATCCACCATTCACTTTCACTGGTGAAAATTACCGACTCGGGTCTGTGAAGATGCAAGCTTTTTTGGAAGCCTATAAACTTTGGGAAATCATGACGGAAGATAAACCACTTGCTGCTCTACCAGCAAATCCTACCTTGGCTCAGATCAAATCCAACAACGAAGAGAAGACAAAGAAATCTAAAGCCAAGTCGCTTATGCAGAATGCTGTGGCAGATACTGTGTTTTACAGAATCATGGCTTGCAAAGCTGCAAAAGAGACTTGGGATAGGTTGAAAGAAGAATATCAAGGCAGCGATAGAACACATCAAATGCAAGTGGAACCTAAAAAGAGAGTTTGAGTCTTTGAATATGCAGGAGGATGAAACTATTAGTAAGTATGCTGATCGAATATCCTTAATTGTTAATAACATTAGACTTTTTGGTGAAGAATTTACAGACAAACGAATTGTGGAGAAAGTTCTTGTGACTCTTCCTGAGAGATTTGAATCTAAGATTTCCTCTCTTGAAGAATCCAAGGACCTGAGCAAACTTTCATTAGGTGAACTAATGAGTGCTCTTCAAGCTCAAGAGCAAAGGAGGACTATGAGACGGGAAAAGTTCATTGAAGGAGCTTTCTCTGTACAAAAGCAAAAAGGAAAGCAACAATTCCACCAAAAGAATAAGGGCAAGCATGATTGAGGAAACAATAGTGGAGATGTGAAGCAGAAGTTCCCTCCTTGCAAACATTGTAAAAGAAATACACATCTGGAGAAGTATTGTTGGTGGAGAGTCGATGCTATATGTGGCAATTGTAAGTAGACGGGACACGTATCCAAGGTTTGCAAATCAAGAGCAAAGGCCTCTGGTGCTTTGCAAGAACAAGTAGCAGAAACTGACGATGCACATGAAGAGCAACTATTTGCAGTTTCCTACTTTTCAATCAGTGAATCCTCTGATTCATGGCTTCTTGACAGTGGTTGCACAAATCACTTGTGCAACAAACTACTCAAATTCCTAGATGATACTTACAAATCTAAAGTAAAAGTGGGAAACAGTGAGGCAGTAGAAGTCAAAGGCAGAGGTACAGTGTCTATCTCAACAATATCAGGTATCAAAACTATTTCTGATGTTTTGTACACACCTGATATGAGTCAAAATTTGTTGAGTGTTGGACAGATGCTTGAAAATAATTATTCTCTGTATTTTAAGAATCGTGAATGTGTTGTTTCCGACCCTTCTGGAGTAGAGTTATTCTATGTCAAGATGAGCAACATAATGTTTTCAATTGATTGGGAGAAAATAACAGAGCAGGCTTACACTATTACTTCACAAACATGTACAAACCTATGGCACAAAATACAAACCTATGGCACAAAAGGTTTGGTCACTTCAATCTGAGAAGCATCGCCGAGATGAAAAAGAAGGAGCTAGTGGAAAATATGCCTGAATTTCTTTCTAATGCTCAAGTTTGTGAAACTTGCCAACAGGGAAAGCAACCAAAATTGCCATTTCAAGCAAATCAAGTACGAAGAGCTAACCAGAAACTTCAGCTCATTCATATGGATGTTTGCGGCCCAATGAAAACAGATTCGTTGAGTGGTAACAGATACTTTCTCCTCTTTATTGATGACTACAACAGAATGTGTTGGGTTTATTTCATAAGACTGAAGAGTGAAGTCTTTGATGTTTTTAAACAATTTAAAGCTTTAGTAGAAAATCAATGTAATCTTAGTATTAAGGCTTTAAGGTCTGACAATGGAGGAGAATACACTTCTTCTCAATTTGTGGAAAACAAGGTCTGACAACAGAGGAGAATACACTTCTTCTCAATTTGTGGAGTTTTGTAATAGCACAGGTATTGAACGCCAATTGACATTACCATACACTCCACAACTAAATGGCGTGTGAGAAAGGAAGAACAGGACAGTAATGGAGATGGCCATATGTCTTTTGCTCGAAAGAAAGATCCCAAATCAGTTTTGGGCTGAGGCAGTCAATATCTTTGTATATTTGCTGAACAGATTGCCTACTAAGGCCTTGCAGGACATGACTCCATATGAAGCTTGGTGTGGGAACAAACCATCAATACACCATCTCAGAATCTTTGGGTGTATATGTTATTATCGAGTTCCAGAAACAAAAAGGAGTAAGCTGGATAACAAGGCTTATAAAGGCATATTTATGGGCTATAGTTCATCCAAAGGTTACAAAATTTTCTGTTTTAAATCAGACAAACTAATTCTCAGCCGAGAAGTGAAGTTTGATGAAGCAGTTGGTTGGGATTGGATCAGAAGACCTCTTATTCTGATTCATTTTCAATAGAGCAGCCTCAACTTTCAGAAGATGAACTAGTGGATGATGTACCAGTGAGGGGAACTCGATCCTTAAAAGATGTCTATCAGCGGTATAACTTGGTTAGCTCTGAACCAACAAGCTATGCTGAAGCACAAGACTCTCAGGCATGGAGAAGAGCTATGCAAGAAGAACTAGACATGATCGAGAAGAATGGAACCTGACAGCTTGTTGACAGACCTAGAAATCGCAAGGTAATTGGTGTAAAATGGATTTTAAGACAAAACTCAATCCTGATGGAACAATTTGCAAACATAAGGCTAGATTGGTGGTGAAGGGATATGCACAACAATATGTGTGGATTACCAGGAAACATTTGCTCTTGTAGCAAGGTTTGCTTGCTCAACTACTGGAAAAGAGGATCAAGTTTATCTCTTAACAAAGGCTTTGTATGGCCTAAAACAAGCCCGAAGGGCATGGTATGAGAGGATGGACAATCATCTCATCCAACTTGGCTTTAGTAGAAGTCAAGTGAAGCTACTTTATATGTGAAAGTCAATGCTGCAGGTGAGTCCTTAATTGTCTCAATTTATGTGGATGACATGCTTGTGACAGGAAGCAAAATTGAACTAATCCAAAGGTTCAAGGATGAAATGGAGAAAATCTTTGGAATGACTGATCTTGGAGTCATGAAGTACTTTCTCGGCATGGAAGTGTTGCAATCCAGTGATGGAATTTTTATATGCCAGCAGAAATACATTTCGGATATTCTAAACAGGTTCAAAATGCAAGACTGCAAACCTGTGAGTACTCCAATATCTATTGGTGTGAAGCTTGCCAAGGATGAGGATTCCGAAAAAGAGGATGATAGTATGTATAGAAGCTTAATTGGCAGTCTTCTATATCTAACCGCAAGCAGGCCTGTCATTCTATTTGTTGTTAGTTTGCTCTCTAGGTTCATGCATTCACCTAGAGACACACACCTCACAGCTGCTAAAAGAGTGTTAAGGTATATTAAAGGAACCAACAAGTTTGGAATTTTTTTCCCAAACATCTGCCGAAGTAACTATGAACTTGATCGGGTACTTTGATAGTGATTGGGGTGGTGGAGTTGATGATTCCAGAAGCACATCTGGATATCTTTTCTGTTTGGGGACAAGTTGTTTTAGTTGGAGCTCTAGAAAACAAGAAACTACAGCTCAATCAACAGCAGAAGCTGAGTACATAGCTGCTGCATCTGCTGTGAATCGAGTTATCTGGCTAAGGAAGATGATGATGGACTTAGGCCATAAGCTACCAAGATCATGTGTGACAACAGTTCAGCAGTTTCAATCTAAAAAAATCCAGTGTTTTATGGTCGAACTAAACATATCAAGATCAAGTTTCATTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTAGTTTTAATGTTTATGTTTTTTCTTTGTATAAATTCAGACTTTCTGCAGATTAATATATACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAACAGTAACTAAGTTGTGTCTGTGGGTTATTATGTCCATCTGGTCTTCTATTGCAACTTCTTATTGTCAAAATATTTGAAGAATGTGTAAGATTATCATTGTTAAGCCTCCCATTTTAAAGTCACTTATTTTTCTTGATTGAGCTAATTTTCCAACATAGTCAGTCCTGTGCTTCAGAGGTGCTCCTAGCTGTACCCTAAATAAAACTAGGAGGTCACCCAAAAAAGTAGTATAAATTGGTTCATAAGATGGATCTAGCTTCTGCACTTTGCACTGCCCTTGAAATATTTTCTTTACAAAAGATGATGCCCTGAAATTTATATGCTCTCCAATTTTTAACTGCATTATTGGATGTTTGTTAGGTTACATCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCGGTAAGCTTTGAAACAGCACCGATATGACTAGTAACTTCGTTAAATTGTGTTCTATAAAGAGTTCTGTATTTCTTCGTTCTAGCTGGGGTTACTAGTTTATTATTTCCTCTCTTCAATAAAGATTATAGATGATTGCTGGACCCGTCCCCCTTTTCTCCCTTTGCCACACCCGGTATCTTTTCTTTGTTTTCTAATTGTTTCTCCTTTCTTTTGCAAGATGCACTTGACCTTGTCACTGCACTAGTTCTCTCATTTGTTAGTAGGTTCTCCAAACTTTTTTGTTAGTCTATGTTAACCACCACCAAGTATACGTTGAAGTGTCCAAAGTGGGACTTCATGCTCTTCAAACACGTATTAGACGCAACTTATGTTTCAGTCCCTCCTCTGCTATATTAATAGAGTTATGGTTTTGCAGTCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATG</genome_strand>
        <mrna_strand>GTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACATCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAACTAACACAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGATGTGATGCATTACTCATTACTAGTTGGGGTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E707731" ref_strand="+" ref_description="SGN-E707731 [FA33DC10]">
      <seq>cattaatgctttgcatgcccgaatatctttctcagatgatggccctcctggaaaggttaagtacacagtcacctgctattatgcgaagcaattcgagaccttgagaaagtcttgttgccccaatgaatcagactttatacgttcccttagccgatgcaaaaaatggggtgctcagggcgggaagagcaatgttttctttgccaaaaccttggacgaccgatttatcatcaagcaggtaacgaagacagagttggagtcatttatcaagtttgcaccagcttactttaagtatttatctgactcaatagctagtgggagcccaacttgcttggcaaagattctggggatctaccaggttacatcaaagcatctcaaaggtgggaaagaatcaagaatggatgtgcttgttatggaaaatcttctttttaagcgcaacatcactagactgtatgacctcaaagggtcgtctcgatcacgctataatccagattcaagtggaagtaacaaagttttacttgatcagaacttgattgaagcaatgccaacttctccgatttttgtgggaacgcaagctaagcggctgctgcagagagctgtgtggaatgatacttcatttctagcgtcaatagatgtgatggattactcattactagttggggtggatgagaagaagcaggaactggtgcttggtattattgatttcatgagacagtatacgtgggacaagcatctcgagacttgngtaaaggcttcaggtattctaggtgggccgaagaatgcagccccaacggtgatttctccaagcaatacaaaataagattcaggaaagcaatgtctacatactttctgatggtgccagatgagtggcctacatgaagtgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98565" stop="105455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98864" g_stop="99218" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99219" i_stop="104210" i_length="4992">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104211" g_stop="104477" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="622" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104478" i_stop="104892" i_length="415">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104893" g_stop="105155" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="884" r_length="262" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E707731" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98864" e_stop="99218"/>
          <exon e_start="104211" e_stop="104477"/>
          <exon e_start="104893" e_stop="105155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAGGTATGCTGTATATCATTTCTAAGTAACCAAAGTCATTGTTATAATCAGTATTTTCAGCTTTCTGATATCTATGTGCAGTGGAGCACTATTATTCTGGTGAAGCAGTCTGGGGTTGTAATTGTTAGCCAATTTGGCGTTTTTTCAGCTTATTATTATTTTACTGTTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGCTAGACTTAGTCAACTTTAATTGCTCAACTTTCTGAAGTTAGTGGCCCCATTATGGTTGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTTAGTTTTAATGTTTATGTTTTTTACTTGTATAAATTTAGACATTCTGCAGATTAATATACACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAATAGTGGCATCAGAGCCTCTAGTTGATCTTACAAGACAAAAAAAAAGTTTTAACCTACAACACAAATGGCATCCAACAACCTACCTTTAAATCCACCATTCACTTTCACTGGTGAAAATTACCGACTCGGGTCTGTGAAGATGCAAGCTTTTTTGGAAGCCTATAAACTTTGGGAAATCATGACGGAAGATAAACCACTTGCTGCTCTACCAGCAAATCCTACCTTGGCTCAGATCAAATCCAACAACGAAGAGAAGACAAAGAAATCTAAAGCCAAGTCGCTTATGCAGAATGCTGTGGCAGATACTGTGTTTTACAGAATCATGGCTTGCAAAGCTGCAAAAGAGACTTGGGATAGGTTGAAAGAAGAATATCAAGGCAGCGATAGAACACATCAAATGCAAGTGGAACCTAAAAAGAGAGTTTGAGTCTTTGAATATGCAGGAGGATGAAACTATTAGTAAGTATGCTGATCGAATATCCTTAATTGTTAATAACATTAGACTTTTTGGTGAAGAATTTACAGACAAACGAATTGTGGAGAAAGTTCTTGTGACTCTTCCTGAGAGATTTGAATCTAAGATTTCCTCTCTTGAAGAATCCAAGGACCTGAGCAAACTTTCATTAGGTGAACTAATGAGTGCTCTTCAAGCTCAAGAGCAAAGGAGGACTATGAGACGGGAAAAGTTCATTGAAGGAGCTTTCTCTGTACAAAAGCAAAAAGGAAAGCAACAATTCCACCAAAAGAATAAGGGCAAGCATGATTGAGGAAACAATAGTGGAGATGTGAAGCAGAAGTTCCCTCCTTGCAAACATTGTAAAAGAAATACACATCTGGAGAAGTATTGTTGGTGGAGAGTCGATGCTATATGTGGCAATTGTAAGTAGACGGGACACGTATCCAAGGTTTGCAAATCAAGAGCAAAGGCCTCTGGTGCTTTGCAAGAACAAGTAGCAGAAACTGACGATGCACATGAAGAGCAACTATTTGCAGTTTCCTACTTTTCAATCAGTGAATCCTCTGATTCATGGCTTCTTGACAGTGGTTGCACAAATCACTTGTGCAACAAACTACTCAAATTCCTAGATGATACTTACAAATCTAAAGTAAAAGTGGGAAACAGTGAGGCAGTAGAAGTCAAAGGCAGAGGTACAGTGTCTATCTCAACAATATCAGGTATCAAAACTATTTCTGATGTTTTGTACACACCTGATATGAGTCAAAATTTGTTGAGTGTTGGACAGATGCTTGAAAATAATTATTCTCTGTATTTTAAGAATCGTGAATGTGTTGTTTCCGACCCTTCTGGAGTAGAGTTATTCTATGTCAAGATGAGCAACATAATGTTTTCAATTGATTGGGAGAAAATAACAGAGCAGGCTTACACTATTACTTCACAAACATGTACAAACCTATGGCACAAAATACAAACCTATGGCACAAAAGGTTTGGTCACTTCAATCTGAGAAGCATCGCCGAGATGAAAAAGAAGGAGCTAGTGGAAAATATGCCTGAATTTCTTTCTAATGCTCAAGTTTGTGAAACTTGCCAACAGGGAAAGCAACCAAAATTGCCATTTCAAGCAAATCAAGTACGAAGAGCTAACCAGAAACTTCAGCTCATTCATATGGATGTTTGCGGCCCAATGAAAACAGATTCGTTGAGTGGTAACAGATACTTTCTCCTCTTTATTGATGACTACAACAGAATGTGTTGGGTTTATTTCATAAGACTGAAGAGTGAAGTCTTTGATGTTTTTAAACAATTTAAAGCTTTAGTAGAAAATCAATGTAATCTTAGTATTAAGGCTTTAAGGTCTGACAATGGAGGAGAATACACTTCTTCTCAATTTGTGGAAAACAAGGTCTGACAACAGAGGAGAATACACTTCTTCTCAATTTGTGGAGTTTTGTAATAGCACAGGTATTGAACGCCAATTGACATTACCATACACTCCACAACTAAATGGCGTGTGAGAAAGGAAGAACAGGACAGTAATGGAGATGGCCATATGTCTTTTGCTCGAAAGAAAGATCCCAAATCAGTTTTGGGCTGAGGCAGTCAATATCTTTGTATATTTGCTGAACAGATTGCCTACTAAGGCCTTGCAGGACATGACTCCATATGAAGCTTGGTGTGGGAACAAACCATCAATACACCATCTCAGAATCTTTGGGTGTATATGTTATTATCGAGTTCCAGAAACAAAAAGGAGTAAGCTGGATAACAAGGCTTATAAAGGCATATTTATGGGCTATAGTTCATCCAAAGGTTACAAAATTTTCTGTTTTAAATCAGACAAACTAATTCTCAGCCGAGAAGTGAAGTTTGATGAAGCAGTTGGTTGGGATTGGATCAGAAGACCTCTTATTCTGATTCATTTTCAATAGAGCAGCCTCAACTTTCAGAAGATGAACTAGTGGATGATGTACCAGTGAGGGGAACTCGATCCTTAAAAGATGTCTATCAGCGGTATAACTTGGTTAGCTCTGAACCAACAAGCTATGCTGAAGCACAAGACTCTCAGGCATGGAGAAGAGCTATGCAAGAAGAACTAGACATGATCGAGAAGAATGGAACCTGACAGCTTGTTGACAGACCTAGAAATCGCAAGGTAATTGGTGTAAAATGGATTTTAAGACAAAACTCAATCCTGATGGAACAATTTGCAAACATAAGGCTAGATTGGTGGTGAAGGGATATGCACAACAATATGTGTGGATTACCAGGAAACATTTGCTCTTGTAGCAAGGTTTGCTTGCTCAACTACTGGAAAAGAGGATCAAGTTTATCTCTTAACAAAGGCTTTGTATGGCCTAAAACAAGCCCGAAGGGCATGGTATGAGAGGATGGACAATCATCTCATCCAACTTGGCTTTAGTAGAAGTCAAGTGAAGCTACTTTATATGTGAAAGTCAATGCTGCAGGTGAGTCCTTAATTGTCTCAATTTATGTGGATGACATGCTTGTGACAGGAAGCAAAATTGAACTAATCCAAAGGTTCAAGGATGAAATGGAGAAAATCTTTGGAATGACTGATCTTGGAGTCATGAAGTACTTTCTCGGCATGGAAGTGTTGCAATCCAGTGATGGAATTTTTATATGCCAGCAGAAATACATTTCGGATATTCTAAACAGGTTCAAAATGCAAGACTGCAAACCTGTGAGTACTCCAATATCTATTGGTGTGAAGCTTGCCAAGGATGAGGATTCCGAAAAAGAGGATGATAGTATGTATAGAAGCTTAATTGGCAGTCTTCTATATCTAACCGCAAGCAGGCCTGTCATTCTATTTGTTGTTAGTTTGCTCTCTAGGTTCATGCATTCACCTAGAGACACACACCTCACAGCTGCTAAAAGAGTGTTAAGGTATATTAAAGGAACCAACAAGTTTGGAATTTTTTTCCCAAACATCTGCCGAAGTAACTATGAACTTGATCGGGTACTTTGATAGTGATTGGGGTGGTGGAGTTGATGATTCCAGAAGCACATCTGGATATCTTTTCTGTTTGGGGACAAGTTGTTTTAGTTGGAGCTCTAGAAAACAAGAAACTACAGCTCAATCAACAGCAGAAGCTGAGTACATAGCTGCTGCATCTGCTGTGAATCGAGTTATCTGGCTAAGGAAGATGATGATGGACTTAGGCCATAAGCTACCAAGATCATGTGTGACAACAGTTCAGCAGTTTCAATCTAAAAAAATCCAGTGTTTTATGGTCGAACTAAACATATCAAGATCAAGTTTCATTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTAGTTTTAATGTTTATGTTTTTTCTTTGTATAAATTCAGACTTTCTGCAGATTAATATATACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAACAGTAACTAAGTTGTGTCTGTGGGTTATTATGTCCATCTGGTCTTCTATTGCAACTTCTTATTGTCAAAATATTTGAAGAATGTGTAAGATTATCATTGTTAAGCCTCCCATTTTAAAGTCACTTATTTTTCTTGATTGAGCTAATTTTCCAACATAGTCAGTCCTGTGCTTCAGAGGTGCTCCTAGCTGTACCCTAAATAAAACTAGGAGGTCACCCAAAAAAGTAGTATAAATTGGTTCATAAGATGGATCTAGCTTCTGCACTTTGCACTGCCCTTGAAATATTTTCTTTACAAAAGATGATGCCCTGAAATTTATATGCTCTCCAATTTTTAACTGCATTATTGGATGTTTGTTAGGTTACATCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCGGTAAGCTTTGAAACAGCACCGATATGACTAGTAACTTCGTTAAATTGTGTTCTATAAAGAGTTCTGTATTTCTTCGTTCTAGCTGGGGTTACTAGTTTATTATTTCCTCTCTTCAATAAAGATTATAGATGATTGCTGGACCCGTCCCCCTTTTCTCCCTTTGCCACACCCGGTATCTTTTCTTTGTTTTCTAATTGTTTCTCCTTTCTTTTGCAAGATGCACTTGACCTTGTCACTGCACTAGTTCTCTCATTTGTTAGTAGGTTCTCCAAACTTTTTTGTTAGTCTATGTTAACCACCACCAAGTATACGTTGAAGTGTCCAAAGTGGGACTTCATGCTCTTCAAACACGTATTAGACGCAACTTATGTTTCAGTCCCTCCTCTGCTATATTAATAGAGTTATGGTTTTGCAGTCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGATGAGTGGCCTACATGAAGTGATAC</genome_strand>
        <mrna_strand>CATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGCGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACATCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGNGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCC-AAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGATGAGTGGCCTACATGAAGTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E433992" ref_strand="+" ref_description="SGN-E433992 [STM-59-E12]">
      <seq>cagacttcatacgttcccttagccgatgcaaaaaatggggtgctcagggtgggaagagcaatgttttctttgccaaaaccttggacgaccgatttatcatcaagcaggtaacaaagacagagttggagtcgtttatcaagtttgcaccagcttactttaagtatttatccgactcaatagctagtgggagcccaacttgcttggcaaagattctggggatctaccaggttacgtcaaagcatctcaaaggtgggaaagaatcaagaatggatgtgcttgttatggaaaatcttctttttaagcgcaacatcactagactgtatgaccttaaagggtcgtctcgatcacgctataattcagattcaagtggaagtaacaaagttttacttgatcagaacttgattgaagcaatgccaacttctccgatttttgtgggaacgcaggctaagcggctgctgcagagggctgtgtggaatgatacttcatttctagcgtcaatagatgtgatggattactcattactagttggggtggatgaggagaagcaggaactggtgcttggtatcattgatttcatgagacagtatacgtgggacaagcatcttgagacttgggtaaaggcttcaggcattctaggtgggccgaagaatgcaaccccaacggtgatttctccaaagcaatacaaaataagattcaggaaagcaatgtctacatactttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98692" stop="105421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98992" g_stop="99218" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99219" i_stop="104210" i_length="4992">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104211" g_stop="104477" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="494" r_length="267" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104478" i_stop="104892" i_length="415">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104893" g_stop="105121" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="723" r_length="229" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E433992" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98992" e_stop="99218"/>
          <exon e_start="104211" e_stop="104477"/>
          <exon e_start="104893" e_stop="105121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAGGTATGCTGTATATCATTTCTAAGTAACCAAAGTCATTGTTATAATCAGTATTTTCAGCTTTCTGATATCTATGTGCAGTGGAGCACTATTATTCTGGTGAAGCAGTCTGGGGTTGTAATTGTTAGCCAATTTGGCGTTTTTTCAGCTTATTATTATTTTACTGTTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGCTAGACTTAGTCAACTTTAATTGCTCAACTTTCTGAAGTTAGTGGCCCCATTATGGTTGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTTAGTTTTAATGTTTATGTTTTTTACTTGTATAAATTTAGACATTCTGCAGATTAATATACACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAATAGTGGCATCAGAGCCTCTAGTTGATCTTACAAGACAAAAAAAAAGTTTTAACCTACAACACAAATGGCATCCAACAACCTACCTTTAAATCCACCATTCACTTTCACTGGTGAAAATTACCGACTCGGGTCTGTGAAGATGCAAGCTTTTTTGGAAGCCTATAAACTTTGGGAAATCATGACGGAAGATAAACCACTTGCTGCTCTACCAGCAAATCCTACCTTGGCTCAGATCAAATCCAACAACGAAGAGAAGACAAAGAAATCTAAAGCCAAGTCGCTTATGCAGAATGCTGTGGCAGATACTGTGTTTTACAGAATCATGGCTTGCAAAGCTGCAAAAGAGACTTGGGATAGGTTGAAAGAAGAATATCAAGGCAGCGATAGAACACATCAAATGCAAGTGGAACCTAAAAAGAGAGTTTGAGTCTTTGAATATGCAGGAGGATGAAACTATTAGTAAGTATGCTGATCGAATATCCTTAATTGTTAATAACATTAGACTTTTTGGTGAAGAATTTACAGACAAACGAATTGTGGAGAAAGTTCTTGTGACTCTTCCTGAGAGATTTGAATCTAAGATTTCCTCTCTTGAAGAATCCAAGGACCTGAGCAAACTTTCATTAGGTGAACTAATGAGTGCTCTTCAAGCTCAAGAGCAAAGGAGGACTATGAGACGGGAAAAGTTCATTGAAGGAGCTTTCTCTGTACAAAAGCAAAAAGGAAAGCAACAATTCCACCAAAAGAATAAGGGCAAGCATGATTGAGGAAACAATAGTGGAGATGTGAAGCAGAAGTTCCCTCCTTGCAAACATTGTAAAAGAAATACACATCTGGAGAAGTATTGTTGGTGGAGAGTCGATGCTATATGTGGCAATTGTAAGTAGACGGGACACGTATCCAAGGTTTGCAAATCAAGAGCAAAGGCCTCTGGTGCTTTGCAAGAACAAGTAGCAGAAACTGACGATGCACATGAAGAGCAACTATTTGCAGTTTCCTACTTTTCAATCAGTGAATCCTCTGATTCATGGCTTCTTGACAGTGGTTGCACAAATCACTTGTGCAACAAACTACTCAAATTCCTAGATGATACTTACAAATCTAAAGTAAAAGTGGGAAACAGTGAGGCAGTAGAAGTCAAAGGCAGAGGTACAGTGTCTATCTCAACAATATCAGGTATCAAAACTATTTCTGATGTTTTGTACACACCTGATATGAGTCAAAATTTGTTGAGTGTTGGACAGATGCTTGAAAATAATTATTCTCTGTATTTTAAGAATCGTGAATGTGTTGTTTCCGACCCTTCTGGAGTAGAGTTATTCTATGTCAAGATGAGCAACATAATGTTTTCAATTGATTGGGAGAAAATAACAGAGCAGGCTTACACTATTACTTCACAAACATGTACAAACCTATGGCACAAAATACAAACCTATGGCACAAAAGGTTTGGTCACTTCAATCTGAGAAGCATCGCCGAGATGAAAAAGAAGGAGCTAGTGGAAAATATGCCTGAATTTCTTTCTAATGCTCAAGTTTGTGAAACTTGCCAACAGGGAAAGCAACCAAAATTGCCATTTCAAGCAAATCAAGTACGAAGAGCTAACCAGAAACTTCAGCTCATTCATATGGATGTTTGCGGCCCAATGAAAACAGATTCGTTGAGTGGTAACAGATACTTTCTCCTCTTTATTGATGACTACAACAGAATGTGTTGGGTTTATTTCATAAGACTGAAGAGTGAAGTCTTTGATGTTTTTAAACAATTTAAAGCTTTAGTAGAAAATCAATGTAATCTTAGTATTAAGGCTTTAAGGTCTGACAATGGAGGAGAATACACTTCTTCTCAATTTGTGGAAAACAAGGTCTGACAACAGAGGAGAATACACTTCTTCTCAATTTGTGGAGTTTTGTAATAGCACAGGTATTGAACGCCAATTGACATTACCATACACTCCACAACTAAATGGCGTGTGAGAAAGGAAGAACAGGACAGTAATGGAGATGGCCATATGTCTTTTGCTCGAAAGAAAGATCCCAAATCAGTTTTGGGCTGAGGCAGTCAATATCTTTGTATATTTGCTGAACAGATTGCCTACTAAGGCCTTGCAGGACATGACTCCATATGAAGCTTGGTGTGGGAACAAACCATCAATACACCATCTCAGAATCTTTGGGTGTATATGTTATTATCGAGTTCCAGAAACAAAAAGGAGTAAGCTGGATAACAAGGCTTATAAAGGCATATTTATGGGCTATAGTTCATCCAAAGGTTACAAAATTTTCTGTTTTAAATCAGACAAACTAATTCTCAGCCGAGAAGTGAAGTTTGATGAAGCAGTTGGTTGGGATTGGATCAGAAGACCTCTTATTCTGATTCATTTTCAATAGAGCAGCCTCAACTTTCAGAAGATGAACTAGTGGATGATGTACCAGTGAGGGGAACTCGATCCTTAAAAGATGTCTATCAGCGGTATAACTTGGTTAGCTCTGAACCAACAAGCTATGCTGAAGCACAAGACTCTCAGGCATGGAGAAGAGCTATGCAAGAAGAACTAGACATGATCGAGAAGAATGGAACCTGACAGCTTGTTGACAGACCTAGAAATCGCAAGGTAATTGGTGTAAAATGGATTTTAAGACAAAACTCAATCCTGATGGAACAATTTGCAAACATAAGGCTAGATTGGTGGTGAAGGGATATGCACAACAATATGTGTGGATTACCAGGAAACATTTGCTCTTGTAGCAAGGTTTGCTTGCTCAACTACTGGAAAAGAGGATCAAGTTTATCTCTTAACAAAGGCTTTGTATGGCCTAAAACAAGCCCGAAGGGCATGGTATGAGAGGATGGACAATCATCTCATCCAACTTGGCTTTAGTAGAAGTCAAGTGAAGCTACTTTATATGTGAAAGTCAATGCTGCAGGTGAGTCCTTAATTGTCTCAATTTATGTGGATGACATGCTTGTGACAGGAAGCAAAATTGAACTAATCCAAAGGTTCAAGGATGAAATGGAGAAAATCTTTGGAATGACTGATCTTGGAGTCATGAAGTACTTTCTCGGCATGGAAGTGTTGCAATCCAGTGATGGAATTTTTATATGCCAGCAGAAATACATTTCGGATATTCTAAACAGGTTCAAAATGCAAGACTGCAAACCTGTGAGTACTCCAATATCTATTGGTGTGAAGCTTGCCAAGGATGAGGATTCCGAAAAAGAGGATGATAGTATGTATAGAAGCTTAATTGGCAGTCTTCTATATCTAACCGCAAGCAGGCCTGTCATTCTATTTGTTGTTAGTTTGCTCTCTAGGTTCATGCATTCACCTAGAGACACACACCTCACAGCTGCTAAAAGAGTGTTAAGGTATATTAAAGGAACCAACAAGTTTGGAATTTTTTTCCCAAACATCTGCCGAAGTAACTATGAACTTGATCGGGTACTTTGATAGTGATTGGGGTGGTGGAGTTGATGATTCCAGAAGCACATCTGGATATCTTTTCTGTTTGGGGACAAGTTGTTTTAGTTGGAGCTCTAGAAAACAAGAAACTACAGCTCAATCAACAGCAGAAGCTGAGTACATAGCTGCTGCATCTGCTGTGAATCGAGTTATCTGGCTAAGGAAGATGATGATGGACTTAGGCCATAAGCTACCAAGATCATGTGTGACAACAGTTCAGCAGTTTCAATCTAAAAAAATCCAGTGTTTTATGGTCGAACTAAACATATCAAGATCAAGTTTCATTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTAGTTTTAATGTTTATGTTTTTTCTTTGTATAAATTCAGACTTTCTGCAGATTAATATATACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAACAGTAACTAAGTTGTGTCTGTGGGTTATTATGTCCATCTGGTCTTCTATTGCAACTTCTTATTGTCAAAATATTTGAAGAATGTGTAAGATTATCATTGTTAAGCCTCCCATTTTAAAGTCACTTATTTTTCTTGATTGAGCTAATTTTCCAACATAGTCAGTCCTGTGCTTCAGAGGTGCTCCTAGCTGTACCCTAAATAAAACTAGGAGGTCACCCAAAAAAGTAGTATAAATTGGTTCATAAGATGGATCTAGCTTCTGCACTTTGCACTGCCCTTGAAATATTTTCTTTACAAAAGATGATGCCCTGAAATTTATATGCTCTCCAATTTTTAACTGCATTATTGGATGTTTGTTAGGTTACATCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCGGTAAGCTTTGAAACAGCACCGATATGACTAGTAACTTCGTTAAATTGTGTTCTATAAAGAGTTCTGTATTTCTTCGTTCTAGCTGGGGTTACTAGTTTATTATTTCCTCTCTTCAATAAAGATTATAGATGATTGCTGGACCCGTCCCCCTTTTCTCCCTTTGCCACACCCGGTATCTTTTCTTTGTTTTCTAATTGTTTCTCCTTTCTTTTGCAAGATGCACTTGACCTTGTCACTGCACTAGTTCTCTCATTTGTTAGTAGGTTCTCCAAACTTTTTTGTTAGTCTATGTTAACCACCACCAAGTATACGTTGAAGTGTCCAAAGTGGGACTTCATGCTCTTCAAACACGTATTAGACGCAACTTATGTTTCAGTCCCTCCTCTGCTATATTAATAGAGTTATGGTTTTGCAGTCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGA</genome_strand>
        <mrna_strand>CAGACTTCATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACAAAGACAGAGTTGGAGTCGTTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCCGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTTAAAGGGTCGTCTCGATCACGCTATAATTCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAGGCTAAGCGGCTGCTGCAGAGGGCTGTGTGGAATGATACTTCATTTCTAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGGAGAAGCAGGAACTGGTGCTTGGTATCATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTTGAGACTTGGGTAAAGGCTTCAGGCATTCTAGGTGGGCCGAAGAATGCAACCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E404541" ref_strand="+" ref_description="SGN-E404541 [PPC-14-K4]">
      <seq>cagacttcatacgttcccttagccgatgcaaaaaatggggtgctcagggtgggaagagcaatgttttctttgccaaaaccttggacgaccgatttatcatcaagcaggtaacaaagacagagttggagtcgtttatcaagtttgcaccagcttactttaagtatttatccgactcaatagctagtgggagcccaacttgcttggcaaagattctggggatctaccaggttacgtcaaagcatctcaaaggtgggaaagaatcaagaatggatgtgcttgttatggaaaatcttctttttaagcgcaacatcactagactgtatgaccttaaagggtcgtctcgatcacgctataattcagattcaagtggaagtaacaaagttttacttgatcagaacttgattgaagcaatgccaacttctccgatttttgtgggaacgcaggctaagcggctgctgcagagggctgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98692" stop="104754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98992" g_stop="99218" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99219" i_stop="104210" i_length="4992">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104211" g_stop="104454" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="471" r_length="244" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E404541" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98992" e_stop="99218"/>
          <exon e_start="104211" e_stop="104454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAGGTATGCTGTATATCATTTCTAAGTAACCAAAGTCATTGTTATAATCAGTATTTTCAGCTTTCTGATATCTATGTGCAGTGGAGCACTATTATTCTGGTGAAGCAGTCTGGGGTTGTAATTGTTAGCCAATTTGGCGTTTTTTCAGCTTATTATTATTTTACTGTTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGCTAGACTTAGTCAACTTTAATTGCTCAACTTTCTGAAGTTAGTGGCCCCATTATGGTTGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTTAGTTTTAATGTTTATGTTTTTTACTTGTATAAATTTAGACATTCTGCAGATTAATATACACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAATAGTGGCATCAGAGCCTCTAGTTGATCTTACAAGACAAAAAAAAAGTTTTAACCTACAACACAAATGGCATCCAACAACCTACCTTTAAATCCACCATTCACTTTCACTGGTGAAAATTACCGACTCGGGTCTGTGAAGATGCAAGCTTTTTTGGAAGCCTATAAACTTTGGGAAATCATGACGGAAGATAAACCACTTGCTGCTCTACCAGCAAATCCTACCTTGGCTCAGATCAAATCCAACAACGAAGAGAAGACAAAGAAATCTAAAGCCAAGTCGCTTATGCAGAATGCTGTGGCAGATACTGTGTTTTACAGAATCATGGCTTGCAAAGCTGCAAAAGAGACTTGGGATAGGTTGAAAGAAGAATATCAAGGCAGCGATAGAACACATCAAATGCAAGTGGAACCTAAAAAGAGAGTTTGAGTCTTTGAATATGCAGGAGGATGAAACTATTAGTAAGTATGCTGATCGAATATCCTTAATTGTTAATAACATTAGACTTTTTGGTGAAGAATTTACAGACAAACGAATTGTGGAGAAAGTTCTTGTGACTCTTCCTGAGAGATTTGAATCTAAGATTTCCTCTCTTGAAGAATCCAAGGACCTGAGCAAACTTTCATTAGGTGAACTAATGAGTGCTCTTCAAGCTCAAGAGCAAAGGAGGACTATGAGACGGGAAAAGTTCATTGAAGGAGCTTTCTCTGTACAAAAGCAAAAAGGAAAGCAACAATTCCACCAAAAGAATAAGGGCAAGCATGATTGAGGAAACAATAGTGGAGATGTGAAGCAGAAGTTCCCTCCTTGCAAACATTGTAAAAGAAATACACATCTGGAGAAGTATTGTTGGTGGAGAGTCGATGCTATATGTGGCAATTGTAAGTAGACGGGACACGTATCCAAGGTTTGCAAATCAAGAGCAAAGGCCTCTGGTGCTTTGCAAGAACAAGTAGCAGAAACTGACGATGCACATGAAGAGCAACTATTTGCAGTTTCCTACTTTTCAATCAGTGAATCCTCTGATTCATGGCTTCTTGACAGTGGTTGCACAAATCACTTGTGCAACAAACTACTCAAATTCCTAGATGATACTTACAAATCTAAAGTAAAAGTGGGAAACAGTGAGGCAGTAGAAGTCAAAGGCAGAGGTACAGTGTCTATCTCAACAATATCAGGTATCAAAACTATTTCTGATGTTTTGTACACACCTGATATGAGTCAAAATTTGTTGAGTGTTGGACAGATGCTTGAAAATAATTATTCTCTGTATTTTAAGAATCGTGAATGTGTTGTTTCCGACCCTTCTGGAGTAGAGTTATTCTATGTCAAGATGAGCAACATAATGTTTTCAATTGATTGGGAGAAAATAACAGAGCAGGCTTACACTATTACTTCACAAACATGTACAAACCTATGGCACAAAATACAAACCTATGGCACAAAAGGTTTGGTCACTTCAATCTGAGAAGCATCGCCGAGATGAAAAAGAAGGAGCTAGTGGAAAATATGCCTGAATTTCTTTCTAATGCTCAAGTTTGTGAAACTTGCCAACAGGGAAAGCAACCAAAATTGCCATTTCAAGCAAATCAAGTACGAAGAGCTAACCAGAAACTTCAGCTCATTCATATGGATGTTTGCGGCCCAATGAAAACAGATTCGTTGAGTGGTAACAGATACTTTCTCCTCTTTATTGATGACTACAACAGAATGTGTTGGGTTTATTTCATAAGACTGAAGAGTGAAGTCTTTGATGTTTTTAAACAATTTAAAGCTTTAGTAGAAAATCAATGTAATCTTAGTATTAAGGCTTTAAGGTCTGACAATGGAGGAGAATACACTTCTTCTCAATTTGTGGAAAACAAGGTCTGACAACAGAGGAGAATACACTTCTTCTCAATTTGTGGAGTTTTGTAATAGCACAGGTATTGAACGCCAATTGACATTACCATACACTCCACAACTAAATGGCGTGTGAGAAAGGAAGAACAGGACAGTAATGGAGATGGCCATATGTCTTTTGCTCGAAAGAAAGATCCCAAATCAGTTTTGGGCTGAGGCAGTCAATATCTTTGTATATTTGCTGAACAGATTGCCTACTAAGGCCTTGCAGGACATGACTCCATATGAAGCTTGGTGTGGGAACAAACCATCAATACACCATCTCAGAATCTTTGGGTGTATATGTTATTATCGAGTTCCAGAAACAAAAAGGAGTAAGCTGGATAACAAGGCTTATAAAGGCATATTTATGGGCTATAGTTCATCCAAAGGTTACAAAATTTTCTGTTTTAAATCAGACAAACTAATTCTCAGCCGAGAAGTGAAGTTTGATGAAGCAGTTGGTTGGGATTGGATCAGAAGACCTCTTATTCTGATTCATTTTCAATAGAGCAGCCTCAACTTTCAGAAGATGAACTAGTGGATGATGTACCAGTGAGGGGAACTCGATCCTTAAAAGATGTCTATCAGCGGTATAACTTGGTTAGCTCTGAACCAACAAGCTATGCTGAAGCACAAGACTCTCAGGCATGGAGAAGAGCTATGCAAGAAGAACTAGACATGATCGAGAAGAATGGAACCTGACAGCTTGTTGACAGACCTAGAAATCGCAAGGTAATTGGTGTAAAATGGATTTTAAGACAAAACTCAATCCTGATGGAACAATTTGCAAACATAAGGCTAGATTGGTGGTGAAGGGATATGCACAACAATATGTGTGGATTACCAGGAAACATTTGCTCTTGTAGCAAGGTTTGCTTGCTCAACTACTGGAAAAGAGGATCAAGTTTATCTCTTAACAAAGGCTTTGTATGGCCTAAAACAAGCCCGAAGGGCATGGTATGAGAGGATGGACAATCATCTCATCCAACTTGGCTTTAGTAGAAGTCAAGTGAAGCTACTTTATATGTGAAAGTCAATGCTGCAGGTGAGTCCTTAATTGTCTCAATTTATGTGGATGACATGCTTGTGACAGGAAGCAAAATTGAACTAATCCAAAGGTTCAAGGATGAAATGGAGAAAATCTTTGGAATGACTGATCTTGGAGTCATGAAGTACTTTCTCGGCATGGAAGTGTTGCAATCCAGTGATGGAATTTTTATATGCCAGCAGAAATACATTTCGGATATTCTAAACAGGTTCAAAATGCAAGACTGCAAACCTGTGAGTACTCCAATATCTATTGGTGTGAAGCTTGCCAAGGATGAGGATTCCGAAAAAGAGGATGATAGTATGTATAGAAGCTTAATTGGCAGTCTTCTATATCTAACCGCAAGCAGGCCTGTCATTCTATTTGTTGTTAGTTTGCTCTCTAGGTTCATGCATTCACCTAGAGACACACACCTCACAGCTGCTAAAAGAGTGTTAAGGTATATTAAAGGAACCAACAAGTTTGGAATTTTTTTCCCAAACATCTGCCGAAGTAACTATGAACTTGATCGGGTACTTTGATAGTGATTGGGGTGGTGGAGTTGATGATTCCAGAAGCACATCTGGATATCTTTTCTGTTTGGGGACAAGTTGTTTTAGTTGGAGCTCTAGAAAACAAGAAACTACAGCTCAATCAACAGCAGAAGCTGAGTACATAGCTGCTGCATCTGCTGTGAATCGAGTTATCTGGCTAAGGAAGATGATGATGGACTTAGGCCATAAGCTACCAAGATCATGTGTGACAACAGTTCAGCAGTTTCAATCTAAAAAAATCCAGTGTTTTATGGTCGAACTAAACATATCAAGATCAAGTTTCATTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTAGTTTTAATGTTTATGTTTTTTCTTTGTATAAATTCAGACTTTCTGCAGATTAATATATACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAACAGTAACTAAGTTGTGTCTGTGGGTTATTATGTCCATCTGGTCTTCTATTGCAACTTCTTATTGTCAAAATATTTGAAGAATGTGTAAGATTATCATTGTTAAGCCTCCCATTTTAAAGTCACTTATTTTTCTTGATTGAGCTAATTTTCCAACATAGTCAGTCCTGTGCTTCAGAGGTGCTCCTAGCTGTACCCTAAATAAAACTAGGAGGTCACCCAAAAAAGTAGTATAAATTGGTTCATAAGATGGATCTAGCTTCTGCACTTTGCACTGCCCTTGAAATATTTTCTTTACAAAAGATGATGCCCTGAAATTTATATGCTCTCCAATTTTTAACTGCATTATTGGATGTTTGTTAGGTTACATCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGT</genome_strand>
        <mrna_strand>CAGACTTCATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACAAAGACAGAGTTGGAGTCGTTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCCGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGTCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTTAAAGGGTCGTCTCGATCACGCTATAATTCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAGGCTAAGCGGCTGCTGCAGAGGGCTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E699849" ref_strand="+" ref_description="SGN-E699849 [FA11BE10]">
      <seq>acttgcttggcaaagattctggggatctaccaggttacatcaaagcatctcaaaggtgggaaagaatcaagaatggatgtgcttgttatggaaaatcttctttttaagcgcaacatcactagactgtatgacctcaaagggtcgtctcgatcacgctataatccagattcaagtggaagtaacaaagttttacttgatcagaacttgattgaagcaatgccaacttctccgatttttgtgggaacgcaagctaagcggctgctgcagagagctgtgtggaatgatacttcatttctagcgtcaatagatgtgatggattactcattactagttggggtggatgagaagaagcaggaactggtgcttggtattattgatttcatgagacagtatacgtgggacaagcatctcgagacttgggtaaaggcttcaggtattctaggtgggccgaagaatgcagccccaacggtgatttctccaaagcaatacaaaataagattcaggaaagcaatgtctacatactttctgatggtgccagatgagtggcctacatgaagtgataccccaagtatcagtgcagaaaaattgccccggccggtcttggtataattttatccatcctttcttatgccatcaagttttgtgtattttgtgcaggaatgttgggtagttgctttatcattagaggattacttttgtttttccaaagtagtagtattacagagttatttccatacaaagaatttgttagtttctgggcgttccgccagttgtacagtcaatagtcggtcttcgtttctttttatcccacattctgatgctcaatggaagctcttggtatattcatgtgtttacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="98886" stop="105750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99186" g_stop="99218" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99219" i_stop="104210" i_length="4992">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104211" g_stop="104477" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="300" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104478" i_stop="104892" i_length="415">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104893" g_stop="105450" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="858" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E699849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99186" e_stop="99218"/>
          <exon e_start="104211" e_stop="104477"/>
          <exon e_start="104893" e_stop="105450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCTTGGCAAAGATTCTGGGGATCTACCAGGTATGCTGTATATCATTTCTAAGTAACCAAAGTCATTGTTATAATCAGTATTTTCAGCTTTCTGATATCTATGTGCAGTGGAGCACTATTATTCTGGTGAAGCAGTCTGGGGTTGTAATTGTTAGCCAATTTGGCGTTTTTTCAGCTTATTATTATTTTACTGTTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGCTAGACTTAGTCAACTTTAATTGCTCAACTTTCTGAAGTTAGTGGCCCCATTATGGTTGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTTAGTTTTAATGTTTATGTTTTTTACTTGTATAAATTTAGACATTCTGCAGATTAATATACACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAATAGTGGCATCAGAGCCTCTAGTTGATCTTACAAGACAAAAAAAAAGTTTTAACCTACAACACAAATGGCATCCAACAACCTACCTTTAAATCCACCATTCACTTTCACTGGTGAAAATTACCGACTCGGGTCTGTGAAGATGCAAGCTTTTTTGGAAGCCTATAAACTTTGGGAAATCATGACGGAAGATAAACCACTTGCTGCTCTACCAGCAAATCCTACCTTGGCTCAGATCAAATCCAACAACGAAGAGAAGACAAAGAAATCTAAAGCCAAGTCGCTTATGCAGAATGCTGTGGCAGATACTGTGTTTTACAGAATCATGGCTTGCAAAGCTGCAAAAGAGACTTGGGATAGGTTGAAAGAAGAATATCAAGGCAGCGATAGAACACATCAAATGCAAGTGGAACCTAAAAAGAGAGTTTGAGTCTTTGAATATGCAGGAGGATGAAACTATTAGTAAGTATGCTGATCGAATATCCTTAATTGTTAATAACATTAGACTTTTTGGTGAAGAATTTACAGACAAACGAATTGTGGAGAAAGTTCTTGTGACTCTTCCTGAGAGATTTGAATCTAAGATTTCCTCTCTTGAAGAATCCAAGGACCTGAGCAAACTTTCATTAGGTGAACTAATGAGTGCTCTTCAAGCTCAAGAGCAAAGGAGGACTATGAGACGGGAAAAGTTCATTGAAGGAGCTTTCTCTGTACAAAAGCAAAAAGGAAAGCAACAATTCCACCAAAAGAATAAGGGCAAGCATGATTGAGGAAACAATAGTGGAGATGTGAAGCAGAAGTTCCCTCCTTGCAAACATTGTAAAAGAAATACACATCTGGAGAAGTATTGTTGGTGGAGAGTCGATGCTATATGTGGCAATTGTAAGTAGACGGGACACGTATCCAAGGTTTGCAAATCAAGAGCAAAGGCCTCTGGTGCTTTGCAAGAACAAGTAGCAGAAACTGACGATGCACATGAAGAGCAACTATTTGCAGTTTCCTACTTTTCAATCAGTGAATCCTCTGATTCATGGCTTCTTGACAGTGGTTGCACAAATCACTTGTGCAACAAACTACTCAAATTCCTAGATGATACTTACAAATCTAAAGTAAAAGTGGGAAACAGTGAGGCAGTAGAAGTCAAAGGCAGAGGTACAGTGTCTATCTCAACAATATCAGGTATCAAAACTATTTCTGATGTTTTGTACACACCTGATATGAGTCAAAATTTGTTGAGTGTTGGACAGATGCTTGAAAATAATTATTCTCTGTATTTTAAGAATCGTGAATGTGTTGTTTCCGACCCTTCTGGAGTAGAGTTATTCTATGTCAAGATGAGCAACATAATGTTTTCAATTGATTGGGAGAAAATAACAGAGCAGGCTTACACTATTACTTCACAAACATGTACAAACCTATGGCACAAAATACAAACCTATGGCACAAAAGGTTTGGTCACTTCAATCTGAGAAGCATCGCCGAGATGAAAAAGAAGGAGCTAGTGGAAAATATGCCTGAATTTCTTTCTAATGCTCAAGTTTGTGAAACTTGCCAACAGGGAAAGCAACCAAAATTGCCATTTCAAGCAAATCAAGTACGAAGAGCTAACCAGAAACTTCAGCTCATTCATATGGATGTTTGCGGCCCAATGAAAACAGATTCGTTGAGTGGTAACAGATACTTTCTCCTCTTTATTGATGACTACAACAGAATGTGTTGGGTTTATTTCATAAGACTGAAGAGTGAAGTCTTTGATGTTTTTAAACAATTTAAAGCTTTAGTAGAAAATCAATGTAATCTTAGTATTAAGGCTTTAAGGTCTGACAATGGAGGAGAATACACTTCTTCTCAATTTGTGGAAAACAAGGTCTGACAACAGAGGAGAATACACTTCTTCTCAATTTGTGGAGTTTTGTAATAGCACAGGTATTGAACGCCAATTGACATTACCATACACTCCACAACTAAATGGCGTGTGAGAAAGGAAGAACAGGACAGTAATGGAGATGGCCATATGTCTTTTGCTCGAAAGAAAGATCCCAAATCAGTTTTGGGCTGAGGCAGTCAATATCTTTGTATATTTGCTGAACAGATTGCCTACTAAGGCCTTGCAGGACATGACTCCATATGAAGCTTGGTGTGGGAACAAACCATCAATACACCATCTCAGAATCTTTGGGTGTATATGTTATTATCGAGTTCCAGAAACAAAAAGGAGTAAGCTGGATAACAAGGCTTATAAAGGCATATTTATGGGCTATAGTTCATCCAAAGGTTACAAAATTTTCTGTTTTAAATCAGACAAACTAATTCTCAGCCGAGAAGTGAAGTTTGATGAAGCAGTTGGTTGGGATTGGATCAGAAGACCTCTTATTCTGATTCATTTTCAATAGAGCAGCCTCAACTTTCAGAAGATGAACTAGTGGATGATGTACCAGTGAGGGGAACTCGATCCTTAAAAGATGTCTATCAGCGGTATAACTTGGTTAGCTCTGAACCAACAAGCTATGCTGAAGCACAAGACTCTCAGGCATGGAGAAGAGCTATGCAAGAAGAACTAGACATGATCGAGAAGAATGGAACCTGACAGCTTGTTGACAGACCTAGAAATCGCAAGGTAATTGGTGTAAAATGGATTTTAAGACAAAACTCAATCCTGATGGAACAATTTGCAAACATAAGGCTAGATTGGTGGTGAAGGGATATGCACAACAATATGTGTGGATTACCAGGAAACATTTGCTCTTGTAGCAAGGTTTGCTTGCTCAACTACTGGAAAAGAGGATCAAGTTTATCTCTTAACAAAGGCTTTGTATGGCCTAAAACAAGCCCGAAGGGCATGGTATGAGAGGATGGACAATCATCTCATCCAACTTGGCTTTAGTAGAAGTCAAGTGAAGCTACTTTATATGTGAAAGTCAATGCTGCAGGTGAGTCCTTAATTGTCTCAATTTATGTGGATGACATGCTTGTGACAGGAAGCAAAATTGAACTAATCCAAAGGTTCAAGGATGAAATGGAGAAAATCTTTGGAATGACTGATCTTGGAGTCATGAAGTACTTTCTCGGCATGGAAGTGTTGCAATCCAGTGATGGAATTTTTATATGCCAGCAGAAATACATTTCGGATATTCTAAACAGGTTCAAAATGCAAGACTGCAAACCTGTGAGTACTCCAATATCTATTGGTGTGAAGCTTGCCAAGGATGAGGATTCCGAAAAAGAGGATGATAGTATGTATAGAAGCTTAATTGGCAGTCTTCTATATCTAACCGCAAGCAGGCCTGTCATTCTATTTGTTGTTAGTTTGCTCTCTAGGTTCATGCATTCACCTAGAGACACACACCTCACAGCTGCTAAAAGAGTGTTAAGGTATATTAAAGGAACCAACAAGTTTGGAATTTTTTTCCCAAACATCTGCCGAAGTAACTATGAACTTGATCGGGTACTTTGATAGTGATTGGGGTGGTGGAGTTGATGATTCCAGAAGCACATCTGGATATCTTTTCTGTTTGGGGACAAGTTGTTTTAGTTGGAGCTCTAGAAAACAAGAAACTACAGCTCAATCAACAGCAGAAGCTGAGTACATAGCTGCTGCATCTGCTGTGAATCGAGTTATCTGGCTAAGGAAGATGATGATGGACTTAGGCCATAAGCTACCAAGATCATGTGTGACAACAGTTCAGCAGTTTCAATCTAAAAAAATCCAGTGTTTTATGGTCGAACTAAACATATCAAGATCAAGTTTCATTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTAGTTTTAATGTTTATGTTTTTTCTTTGTATAAATTCAGACTTTCTGCAGATTAATATATACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAACAGTAACTAAGTTGTGTCTGTGGGTTATTATGTCCATCTGGTCTTCTATTGCAACTTCTTATTGTCAAAATATTTGAAGAATGTGTAAGATTATCATTGTTAAGCCTCCCATTTTAAAGTCACTTATTTTTCTTGATTGAGCTAATTTTCCAACATAGTCAGTCCTGTGCTTCAGAGGTGCTCCTAGCTGTACCCTAAATAAAACTAGGAGGTCACCCAAAAAAGTAGTATAAATTGGTTCATAAGATGGATCTAGCTTCTGCACTTTGCACTGCCCTTGAAATATTTTCTTTACAAAAGATGATGCCCTGAAATTTATATGCTCTCCAATTTTTAACTGCATTATTGGATGTTTGTTAGGTTACATCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCGGTAAGCTTTGAAACAGCACCGATATGACTAGTAACTTCGTTAAATTGTGTTCTATAAAGAGTTCTGTATTTCTTCGTTCTAGCTGGGGTTACTAGTTTATTATTTCCTCTCTTCAATAAAGATTATAGATGATTGCTGGACCCGTCCCCCTTTTCTCCCTTTGCCACACCCGGTATCTTTTCTTTGTTTTCTAATTGTTTCTCCTTTCTTTTGCAAGATGCACTTGACCTTGTCACTGCACTAGTTCTCTCATTTGTTAGTAGGTTCTCCAAACTTTTTTGTTAGTCTATGTTAACCACCACCAAGTATACGTTGAAGTGTCCAAAGTGGGACTTCATGCTCTTCAAACACGTATTAGACGCAACTTATGTTTCAGTCCCTCCTCTGCTATATTAATAGAGTTATGGTTTTGCAGTCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGATGAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTGCCCCGGCCGGTCTTGGTATAATTTTATCCATCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTTATCCCACATTCTGATGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATG</genome_strand>
        <mrna_strand>ACTTGCTTGGCAAAGATTCTGGGGATCTACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACATCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGATGAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTGCCCCGGCCGGTCTTGGTATAATTTTATCCATCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTTATCCCACATTCTGATGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E249673" ref_strand="+" ref_description="SGN-E249673 [cLEF-56-L5]">
      <seq>ttttattagagaagtccaacaatttaatgaagtgttgcttgttcattgttcatctgagaactagctagctgacattttcaccaagtcattgccaaaggaaaggtttgaagatccgaggcaaagaattagtgtttgccacaaaaatgccaaggaggagtgttagacaattgacattttttcagcttattattatttttactattttttacttatttcaatttagtgcttcctattttctagtagacttagtcaactttagttgctcaactttctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="103101" stop="103977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103401" g_stop="103677" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E249673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103401" e_stop="103677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</genome_strand>
        <mrna_strand>TTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E394967" ref_strand="+" ref_description="SGN-E394967 [TUS-34-G22]">
      <seq>aaaggtgggaaagaatcaagaatggatgtgcttgttatggaaaatcttctttttaagcgcaacatcactagactgtatgacctcaaagggtcgtctcgatcacgctataatccagattcaagtggaagtaacaaagttttacttgatcagaacttgattgaagcaatgccaacttctccgatttttgtgggaacgcaagctaagcggctgctgcagagagctgtgtggaatgatacttcatttctagcgtcaatagatgtgatggattactcattactagttggggtggatgagaagaagcaggaactggtgcttggtattattgatttcatgagacagtatacgtgggacaagcatctcgagacttgggtaaaggcttcaggtattctaggtgggccgaagaatgcagccccaacggtgatttctccaaagcaatacaaaataagattcaggaaagcaatgtctacatactttctgatggtgccagatggagtggcctacatgaagtgataccccaaatatcagtgcaaaaaaattgcccccggccgggtcttggtataattttatccatcctttcttatgccatcaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="103929" stop="105534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104229" g_stop="104477" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104478" i_stop="104892" i_length="415">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104893" g_stop="105234" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="594" r_length="345" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E394967" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104229" e_stop="104477"/>
          <exon e_start="104893" e_stop="105234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCGGTAAGCTTTGAAACAGCACCGATATGACTAGTAACTTCGTTAAATTGTGTTCTATAAAGAGTTCTGTATTTCTTCGTTCTAGCTGGGGTTACTAGTTTATTATTTCCTCTCTTCAATAAAGATTATAGATGATTGCTGGACCCGTCCCCCTTTTCTCCCTTTGCCACACCCGGTATCTTTTCTTTGTTTTCTAATTGTTTCTCCTTTCTTTTGCAAGATGCACTTGACCTTGTCACTGCACTAGTTCTCTCATTTGTTAGTAGGTTCTCCAAACTTTTTTGTTAGTCTATGTTAACCACCACCAAGTATACGTTGAAGTGTCCAAAGTGGGACTTCATGCTCTTCAAACACGTATTAGACGCAACTTATGTTTCAGTCCCTCCTCTGCTATATTAATAGAGTTATGGTTTTGCAGTCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGAT-GAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTG-CCCCGGCC-GGTCTTGGTATAATTTTATCCATCCTTTCTTATGCCATCAAGTTTT</genome_strand>
        <mrna_strand>AAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGATGGAGTGGCCTACATGAAGTGATACCCCAAATATCAGTGCAAAAAAATTGCCCCCGGCCGGGTCTTGGTATAATTTTATCCATCCTTTCTTATGCCATCAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E249579" ref_strand="+" ref_description="SGN-E249579 [cLEF-56-N20]">
      <seq>aaggtgggaaagaatcaagaatggatgtgctgggtatggaaaatcttctttttaagcgcaacatcactagactgtatgacctcaaagggtcgtctcgatcacgctataatccagattcaagtggaagtaacaaagttttacttgatcagaacttgattgaagcaatgccaacttctccgatttttgtgggaacgcaagctaagcggctgctgcagagagctgtgtggaatgatacttcatttctagcgtcaatagatgtgatggattactcattactagttggggtggatgagaagaagcaggaactggtgcttggtattattgatttcatgagacagtatacgtgggacaagcatctcgagacttgggtaaaggcttcaggtattctaggtgggccgaagaatgcagccccaacggtgatttctccaaagcaatacaaaataagattcaggaaagcaatgtctacatactttctgatggtgccagatgagtggcctacatgaagtgataccccaagtatcagtgcagaaaaattgccccggccggtcttggtataattttatccatcctttcttatgccatcaagttttgtgtattttgtgcaagaatgttgggtagttgctttatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="103930" stop="105575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104230" g_stop="104477" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104478" i_stop="104892" i_length="415">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104893" g_stop="105275" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="631" r_length="383" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E249579" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104230" e_stop="104477"/>
          <exon e_start="104893" e_stop="105275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCGGTAAGCTTTGAAACAGCACCGATATGACTAGTAACTTCGTTAAATTGTGTTCTATAAAGAGTTCTGTATTTCTTCGTTCTAGCTGGGGTTACTAGTTTATTATTTCCTCTCTTCAATAAAGATTATAGATGATTGCTGGACCCGTCCCCCTTTTCTCCCTTTGCCACACCCGGTATCTTTTCTTTGTTTTCTAATTGTTTCTCCTTTCTTTTGCAAGATGCACTTGACCTTGTCACTGCACTAGTTCTCTCATTTGTTAGTAGGTTCTCCAAACTTTTTTGTTAGTCTATGTTAACCACCACCAAGTATACGTTGAAGTGTCCAAAGTGGGACTTCATGCTCTTCAAACACGTATTAGACGCAACTTATGTTTCAGTCCCTCCTCTGCTATATTAATAGAGTTATGGTTTTGCAGTCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGATGAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTGCCCCGGCCGGTCTTGGTATAATTTTATCCATCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATT</genome_strand>
        <mrna_strand>AAGGTGGGAAAGAATCAAGAATGGATGTGCTGGGTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGATGAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTGCCCCGGCCGGTCTTGGTATAATTTTATCCATCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAAGAATGTTGGGTAGTTGCTTTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E701018" ref_strand="+" ref_description="SGN-E701018 [FA14DC03]">
      <seq>caagaatggatgtgcttgttatggaaaatcttctttttaagcgcaacatcactagactgtatgacctcaaagggtcgtctcgatcacgctataatccagattcaagtggaagtaacaaagttttacttgatcagaacttgattgaagcaatgccaacttctccgatttttgtgggaacgcaagctaagcggctgctgcagagagctgtgtggaatgatacttcatttctagcgtcaatagatgtgatggattactcattactagttggggtggatgagaagaagcaggaactggtgcttggtattattgatttcatgagacagtatacgtgggacaagcatctcgagacttgggtaaaggcttcaggtattctaggtgggccgaagaatgcagccccaacggtgatttctccaaagcaatacaaaataagattcaggaaagcaatgtctacatactttctgatggtgccagatgagtggcctacatgaagtgataccccaagtatcagtgcagaaaaattgccccggccggtcttggtataattttatccatcctttcttatgccatcaagttttgtgtattttgtgcaggaatgttgggtagttgctttatcattagaggattacttttgtttttccaaagtagtagtattacagagttatttccatacaaagaatttgttagtttctgggcgttccgccagttgtacagtcaatagtcggtcttcgtttctttttatcccacattctgatgctcaatggaagctcttggtatattcatgtgtttacatgagaattgagactcttttgacaagggctgccgtggtagcagtaaagatcaatgtaatttgatcttgtaagtcctacaatcggatggttttcaataagctgcactcgcgacattttgattttcaggcacctatgcaatgagttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="103945" stop="105893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104245" g_stop="104477" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104478" i_stop="104892" i_length="415">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104893" g_stop="105593" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="934" r_length="701" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E701018" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>934</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104245" e_stop="104477"/>
          <exon e_start="104893" e_stop="105593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCGGTAAGCTTTGAAACAGCACCGATATGACTAGTAACTTCGTTAAATTGTGTTCTATAAAGAGTTCTGTATTTCTTCGTTCTAGCTGGGGTTACTAGTTTATTATTTCCTCTCTTCAATAAAGATTATAGATGATTGCTGGACCCGTCCCCCTTTTCTCCCTTTGCCACACCCGGTATCTTTTCTTTGTTTTCTAATTGTTTCTCCTTTCTTTTGCAAGATGCACTTGACCTTGTCACTGCACTAGTTCTCTCATTTGTTAGTAGGTTCTCCAAACTTTTTTGTTAGTCTATGTTAACCACCACCAAGTATACGTTGAAGTGTCCAAAGTGGGACTTCATGCTCTTCAAACACGTATTAGACGCAACTTATGTTTCAGTCCCTCCTCTGCTATATTAATAGAGTTATGGTTTTGCAGTCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGATGAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTGCCCCGGCCGGTCTTGGTATAATTTTATCCATCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTTATCCCACATTCTGATGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATGAGAATTGAGACTCTTTTGACAAGGGCTGCCGTGGTAGCAGTAAAGATCAATGTAATTTGATCTTGTAAGTCCTACAATCGGATGGTTTCAAATAAGCTGCACTCGCGACATTTTGATTTTCAGGCACCTATGCAATGAGTTGT</genome_strand>
        <mrna_strand>CAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGATGAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTGCCCCGGCCGGTCTTGGTATAATTTTATCCATCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTTATCCCACATTCTGATGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATGAGAATTGAGACTCTTTTGACAAGGGCTGCCGTGGTAGCAGTAAAGATCAATGTAATTTGATCTTGTAAGTCCTACAATCGGATGGTTTTCAATAAGCTGCACTCGCGACATTTTGATTTTCAGGCACCTATGCAATGAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E369111" ref_strand="-" ref_description="SGN-E369111 [TUS-23-I16]">
      <seq>aatgccaacttctccgatttttgtgggaacgcaagctaagcggctgctgcagagagctgtgtggaatgatacttcatttctagcgtcaatagatgtgatggattactcattactagttggggtggatgagaaaaagcaggaactggtgcttggtattattgatttcatgagacagtatacgtgggacaagcatctcgagacttgggtaaaggcttcaggtattttaggtgggccgaagaatgcagccccaacggtgatttctccaaagcaatacaaaataagattcaggaaagcaatgtttacatactttttgatggtgccagatgagtggcctacatgaagtgataccccaagtatcagtgcagaaaaattgccccggccggtcttggtataattttatccatcctttcttatgccatcaagttttgtgtattttgtgcaggaatgttgggtagttgctttatcattaaaggattacttttgtttttccaaagtagtagtattacagagttatttccatacaaagaatttgttagtttttgggcgttccgccagttgtacagtcaatagtcggtcttcgtttctttttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="104093" stop="105697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104393" g_stop="104477" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104478" i_stop="104892" i_length="415">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104893" g_stop="105396" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="589" r_length="504" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="614"/>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E369111" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369111" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104393" e_stop="104477"/>
          <exon e_start="104893" e_stop="105396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCGGTAAGCTTTGAAACAGCACCGATATGACTAGTAACTTCGTTAAATTGTGTTCTATAAAGAGTTCTGTATTTCTTCGTTCTAGCTGGGGTTACTAGTTTATTATTTCCTCTCTTCAATAAAGATTATAGATGATTGCTGGACCCGTCCCCCTTTTCTCCCTTTGCCACACCCGGTATCTTTTCTTTGTTTTCTAATTGTTTCTCCTTTCTTTTGCAAGATGCACTTGACCTTGTCACTGCACTAGTTCTCTCATTTGTTAGTAGGTTCTCCAAACTTTTTTGTTAGTCTATGTTAACCACCACCAAGTATACGTTGAAGTGTCCAAAGTGGGACTTCATGCTCTTCAAACACGTATTAGACGCAACTTATGTTTCAGTCCCTCCTCTGCTATATTAATAGAGTTATGGTTTTGCAGTCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGATGAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTGCCCCGGCCGGTCTTGGTATAATTTTATCCATCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTT</genome_strand>
        <mrna_strand>AATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAAAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTTTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTTTACATACTTTTTGATGGTGCCAGATGAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTGCCCCGGCCGGTCTTGGTATAATTTTATCCATCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATTAAAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTTTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E244298" ref_strand="+" ref_description="SGN-E244298 [cLEF-37-I5]">
      <seq>tttttttttatttgaaaccatccgattgtaggacttacaagatcaaattacattgatctttactgctaccacggcagcccttgtcaaaagagtctcaattctcatgtaaacacatgaatataccaagagcttccattgagcatcagaatgtgggataaaaagaaacgaagaccgactattgactgtacaactggcggaacgcccagaaactaacaaattctttgtatggaaataactctgtaatactactactttggaaaaacaaaagtaatcctctaatgataaagcaactacccaacattcctgcacaaaatacacaaaacttgatggcataagaaaggatggataaaattataccaagaccggccggggcaatttttctgcactgatacttggggtatcacttcatgtaggccactcatctggcaccatcagaaagtatgtagacattgctttcctgaatcttattttgtattgctttggagaaatcaccgttggggctgcattcttcggcccacctagaatacctgaagcctttacccaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="-" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105845" stop="104706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105552" g_stop="105006" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="-" ref_id="SGN-E244298" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105552" e_stop="105006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGCTTATTTGAAACCATCCGATTGTAGGACTTACAAGATCAAATTACATTGATCTTTACTGCTACCACGGCAGCCCTTGTCAAAAGAGTCTCAATTCTCATGTAAACACATGAATATACCAAGAGCTTCCATTGAGCATCAGAATGTGGGATAAAAAGAAACGAAGACCGACTATTGACTGTACAACTGGCGGAACGCCCAGAAACTAACAAATTCTTTGTATGGAAATAACTCTGTAATACTACTACTTTGGAAAAACAAAAGTAATCCTCTAATGATAAAGCAACTACCCAACATTCCTGCACAAAATACACAAAACTTGATGGCATAAGAAAGGATGGATAAAATTATACCAAGACCGGCCGGGGCAATTTTTCTGCACTGATACTTGGGGTATCACTTCATGTAGGCCACTCATCTGGCACCATCAGAAAGTATGTAGACATTGCTTTCCTGAATCTTATTTTGTATTGCTTTGGAGAAATCACCGTTGGGGCTGCATTCTTCGGCCCACCTAGAATACCTGAAGCCTTTACCCAAGTC</genome_strand>
        <mrna_strand>TTTTTTTTTATTTGAAACCATCCGATTGTAGGACTTACAAGATCAAATTACATTGATCTTTACTGCTACCACGGCAGCCCTTGTCAAAAGAGTCTCAATTCTCATGTAAACACATGAATATACCAAGAGCTTCCATTGAGCATCAGAATGTGGGATAAAAAGAAACGAAGACCGACTATTGACTGTACAACTGGCGGAACGCCCAGAAACTAACAAATTCTTTGTATGGAAATAACTCTGTAATACTACTACTTTGGAAAAACAAAAGTAATCCTCTAATGATAAAGCAACTACCCAACATTCCTGCACAAAATACACAAAACTTGATGGCATAAGAAAGGATGGATAAAATTATACCAAGACCGGCCGGGGCAATTTTTCTGCACTGATACTTGGGGTATCACTTCATGTAGGCCACTCATCTGGCACCATCAGAAAGTATGTAGACATTGCTTTCCTGAATCTTATTTTGTATTGCTTTGGAGAAATCACCGTTGGGGCTGCATTCTTCGGCCCACCTAGAATACCTGAAGCCTTTACCCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E218230" ref_strand="-" ref_description="SGN-E218230 [cLEL-23-K17]">
      <seq>atcctttcttatgccatcaagttttgtgtattttgtgcaggaatgttgggtagttgctttatcattagaggattacttttgtttttccaaagtagtagtattacagagttatttccatacaaagaatttgttagtttctgggcgttccgccagttgtacagtcaatagtcggtcttcgtttctttttatcccacattctgatgctcaatggaagctcttggtatattcatgtgtttacatgagaattgagactcttttgacaagggctgccgtggtagcagtaaagatcaatgtaatttgatcttgtaagtcctacaatcggatggtttcaaataagctgcactcgcgacattttgattttcaggcacctatgcaatgagttgtacttgtcgcgattcttcgcctccttcctattttgcacacggtataggttgatcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="104910" stop="105948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105210" g_stop="105647" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="457"/>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E218230" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218230" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105210" e_stop="105647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTTATCCCACATTCTGATGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATGAGAATTGAGACTCTTTTGACAAGGGCTGCCGTGGTAGCAGTAAAGATCAATGTAATTTGATCTTGTAAGTCCTACAATCGGATGGTTTCAAATAAGCTGCACTCGCGACATTTTGATTTTCAGGCACCTATGCAATGAGTTGTACTTGTCGCGATTCTTCGCCTCCTTCCTATTTTGCACACGGTATAGGTTGATCA</genome_strand>
        <mrna_strand>ATCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTTATCCCACATTCTGATGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATGAGAATTGAGACTCTTTTGACAAGGGCTGCCGTGGTAGCAGTAAAGATCAATGTAATTTGATCTTGTAAGTCCTACAATCGGATGGTTTCAAATAAGCTGCACTCGCGACATTTTGATTTTCAGGCACCTATGCAATGAGTTGTACTTGTCGCGATTCTTCGCCTCCTTCCTATTTTGCACACGGTATAGGTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E218013" ref_strand="-" ref_description="SGN-E218013 [cLEL-23-J19]">
      <seq>tcctttcttatgccatcaagttttgtgtattttgtgcaggaatgttgggtagttgctttatcattagaggattacttttgtttttccaaagtagtagtattacagagttatttccatacaaagaatttgttagtttctgggcgttccgccagttgtacagtcaatagtcggtcttcgtttctttttatcccacattctgatgctcaatggaagctcttggtatattcatgtgtttacatgagaattgagactcttttgacaagggctgccgtggtagcagtaaagatcaatgtaatttgatcttgtaagtcctacaatcggatggtttcaaataagctgcactcgcgacattttgattttcaggcacctatgcaatgagttgtacttgtcgcgattcttcgcctccttcctattttgcacacggtataggttggtccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="104911" stop="105948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105211" g_stop="105633" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="456"/>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E218013" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218013" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105211" e_stop="105633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTTATCCCACATTCTGATGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATGAGAATTGAGACTCTTTTGACAAGGGCTGCCGTGGTAGCAGTAAAGATCAATGTAATTTGATCTTGTAAGTCCTACAATCGGATGGTTTCAAATAAGCTGCACTCGCGACATTTTGATTTTCAGGCACCTATGCAATGAGTTGTACTTGTCGCGATTCTTCGCCTCCTTCCTATTTTGCACACG</genome_strand>
        <mrna_strand>TCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTTATCCCACATTCTGATGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATGAGAATTGAGACTCTTTTGACAAGGGCTGCCGTGGTAGCAGTAAAGATCAATGTAATTTGATCTTGTAAGTCCTACAATCGGATGGTTTCAAATAAGCTGCACTCGCGACATTTTGATTTTCAGGCACCTATGCAATGAGTTGTACTTGTCGCGATTCTTCGCCTCCTTCCTATTTTGCACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E218089" ref_strand="-" ref_description="SGN-E218089 [cLEL-23-J19]">
      <seq>tgttgggtagttgctttatcattagaggattacttttgttttccaaagtagtagtattacagagttatttccatacaaagaatttgttagtttctgggcgttccgccagttgtacagtcaatagtcggtcttcgtttctttttatcccacattctgatgctcaatggaagctcttggtatattcatgtgtttacatgagaattgagactcttttgacaagggctgccgtggtagcagtaaagatcaatgtaatttgatcttgtaagtcctacaatcggatggtttcaaataagctgcactcgcgacattttgattttcaggcacctatgcaatgagttgtacttgtcgcgattcttcgcctccttcctattttgcacacggtataggttgatcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="104953" stop="105948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105253" g_stop="105647" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="413"/>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E218089" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218089" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105253" e_stop="105647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTTATCCCACATTCTGATGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATGAGAATTGAGACTCTTTTGACAAGGGCTGCCGTGGTAGCAGTAAAGATCAATGTAATTTGATCTTGTAAGTCCTACAATCGGATGGTTTCAAATAAGCTGCACTCGCGACATTTTGATTTTCAGGCACCTATGCAATGAGTTGTACTTGTCGCGATTCTTCGCCTCCTTCCTATTTTGCACACGGTATAGGTTGATCA</genome_strand>
        <mrna_strand>TGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTG-TTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTTATCCCACATTCTGATGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATGAGAATTGAGACTCTTTTGACAAGGGCTGCCGTGGTAGCAGTAAAGATCAATGTAATTTGATCTTGTAAGTCCTACAATCGGATGGTTTCAAATAAGCTGCACTCGCGACATTTTGATTTTCAGGCACCTATGCAATGAGTTGTACTTGTCGCGATTCTTCGCCTCCTTCCTATTTTGCACACGGTATAGGTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Mmrb9/sgn_ests_tomato_potato" ref_id="SGN-E217874" ref_strand="-" ref_description="SGN-E217874 [cLEL-23-K17]">
      <seq>tgctcaatggaagctcttggtatattcatgtgtttacatgagaattgagactcttttgacaagggctgccgtggtagcagtaaagatcaatgtaatttgatcttgtaagtcctacaatcggatggtttcaaataagctgcactcgcgacattttgattttcaggcacctatgcaatgagttgcacttgtcgcgattcttcgcctccttcctattttgcacacggtataggttgatcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0008H22-QLAa6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0008H22.1" temp_strand="+" temp_description="C07SLe0008H22.1  AC212643.1 htgs_phase:1 submitted_to_sgn_as:gi|158262137|gb|AC212643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0008H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="105111" stop="105948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105411" g_stop="105647" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="238" polyA_stop="256"/>
      <MATCH_line gen_id="C07SLe0008H22.1" gen_strand="+" ref_id="SGN-E217874" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0008H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217874" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105411" e_stop="105647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATGAGAATTGAGACTCTTTTGACAAGGGCTGCCGTGGTAGCAGTAAAGATCAATGTAATTTGATCTTGTAAGTCCTACAATCGGATGGTTTCAAATAAGCTGCACTCGCGACATTTTGATTTTCAGGCACCTATGCAATGAGTTGTACTTGTCGCGATTCTTCGCCTCCTTCCTATTTTGCACACGGTATAGGTTGATCA</genome_strand>
        <mrna_strand>TGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATGAGAATTGAGACTCTTTTGACAAGGGCTGCCGTGGTAGCAGTAAAGATCAATGTAATTTGATCTTGTAAGTCCTACAATCGGATGGTTTCAAATAAGCTGCACTCGCGACATTTTGATTTTCAGGCACCTATGCAATGAGTTGCACTTGTCGCGATTCTTCGCCTCCTTCCTATTTTGCACACGGTATAGGTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>58</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6775" PGL_stop="7125"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6775" e_stop="7125"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="6775" e_stop="7125" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6775" stop="7125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGCCTTAACAAGAGAAAAGTCCTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATCCTTGAGTCATATATGAGGAAACACAACCTGGGGAATAGATATCCTATAACCACGTTCAAAGGGAAAAACTAATCATATGATGACTTTTTGTGAAAAATGCACTATTTTTCCCCTCCCTATGATGTGAGTGCATTGTTTCCTGTAGTTTGTGAAGGTTGAGTTGATAAAAA</gDNA_template>
            <first_frame> N  G  K  S  R  P  I  R  R  K  H  S  N  V  R  S  Y  L  T  N  G  T  I  N  V  D  Y  V  K  S  C  D  N  L  A  D  P  L  T  K  A  L  T  R  E  K  S  W  S  T  S  R  G  M  G  L  K  P  T  N  P  *  V  I  Y  E  E  T  Q  P  G  E  *  I  S  Y  N  H  V  Q  R  E  K  L  I  I  *  *  L  F  V  K  N  A  L  F  F  P  S  L  *  C  E  C  I  V  S  C  S  L  *  R  L  S  *  *  K </first_frame>
            <second_frame>  T  V  N  P  D  L  *  G  G  N  T  V  M  *  D  R  I  *  Q  M  V  P  L  M  L  I  M  S  N  L  V  I  I  L  Q  I  L  L  R  R  P  *  Q  E  K  S  P  G  A  H  R  G  G  W  D  *  S  L  Q  I  L  E  S  Y  M  R  K  H  N  L  G  N  R  Y  P  I  T  T  F  K  G  K  N  *  S  Y  D  D  F  L  *  K  M  H  Y  F  S  P  P  Y  D  V  S  A  L  F  P  V  V  C  E  G  *  V  D  K   </second_frame>
            <third_frame>   R  *  I  Q  T  Y  K  E  E  T  Q  *  C  K  I  V  F  D  K  W  Y  H  *  C  *  L  C  Q  I  L  *  *  S  C  R  S  S  Y  E  G  L  N  K  R  K  V  L  E  H  I  E  G  D  G  I  E  A  Y  K  S  L  S  H  I  *  G  N  T  T  W  G  I  D  I  L  *  P  R  S  K  G  K  T  N  H  M  M  T  F  C  E  K  C  T  I  F  P  L  P  M  M  *  V  H  C  F  L  *  F  V  K  V  E  L  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0008H22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14562" PGL_stop="15217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14562" e_stop="15217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="14562" e_stop="15217" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14562" stop="15217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGATTAACCAGGTTCTTACTTATGTTAGCGGGTTATCTGATTAGGGACAGACACCTCCAGTGTTTTCTGCATCAGCACCTCAGGTTCCGGTAATACAACATGCAGCTGCTGTGGCTCCCCGCATGGATGCCTTATTGGAAGTAGGCATGTTTCCTCGATTGACTACAAGGTCTATAATGACGAGTAATCAACATGAACTTTTCACTAAATTCTTAAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGCTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAATGATTCGGTGTTGAGTTTGTGACCTACCAGTTTTAGGGGAATGCCAAAATGTGGTGGCAGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGAAGAAATATATACCCTAGACTTTGAGGGACAAGAAGAGAGATGAGTTCCTGAGCCTACTGTAAGGCAGGATGTTTGTTACTACTTATGAGGCTAAATTTCGGGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCTTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  L  T  R  F  L  L  M  L  A  G  Y  L  I  R  D  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  *  Y  N  M  Q  L  L  W  L  P  A  W  M  P  Y  W  K  *  A  C  F  L  D  *  L  Q  G  L  *  *  R  V  I  N  M  N  F  S  L  N  S  *  S  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  W  T  *  *  N  D  S  V  L  S  L  *  P  T  S  F  R  G  M  P  K  C  G  G  S  R  M  L  S  V  N  Q  H  R  H  H  L  *  L  G  H  H  S  L  A  Y  L  *  R  N  I  Y  P  R  L  *  G  T  R  R  E  M  S  S  *  A  Y  C  K  A  G  C  L  L  L  L  M  R  L  N  F  G  H  Y  P  G  M  P  P  S  F  A  S  V  H  K  S  G  F  A  F  L  *  K  D  *  G  Q  I  C  R  S  Q  P  Y  R  *   </first_frame>
            <second_frame>  D  D  *  P  G  S  Y  L  C  *  R  V  I  *  L  G  T  D  T  S  S  V  F  C  I  S  T  S  G  S  G  N  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  S  R  H  V  S  S  I  D  Y  K  V  Y  N  D  E  *  S  T  *  T  F  H  *  I  L  K  V  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  A  T  *  D  G  H  S  R  M  I  R  C  *  V  C  D  L  P  V  L  G  E  C  Q  N  V  V  A  V  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  G  I  I  L  *  L  I  Y  E  E  I  Y  T  L  D  F  E  G  Q  E  E  R  *  V  P  E  P  T  V  R  Q  D  V  C  Y  Y  L  *  G  *  I  S  G  T  I  Q  V  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  C  E  R  I  E  V  R  F  A  D  P  S  L  T  G  S  </second_frame>
            <third_frame>   M  I  N  Q  V  L  T  Y  V  S  G  L  S  D  *  G  Q  T  P  P  V  F  S  A  S  A  P  Q  V  P  V  I  Q  H  A  A  A  V  A  P  R  M  D  A  L  L  E  V  G  M  F  P  R  L  T  T  R  S  I  M  T  S  N  Q  H  E  L  F  T  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  A  D  C  H  E  L  L  H  K  M  D  I  V  E  *  F  G  V  E  F  V  T  Y  Q  F  *  G  N  A  K  M  W  W  Q  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  S  L  F  M  K  K  Y  I  P  *  T  L  R  D  K  K  R  D  E  F  L  S  L  L  *  G  R  M  F  V  T  T  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  L  F  V  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14609" stop="14881"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQTPPVFSASAPQVPVIQHAAAVAPRMDALLEVGMFPRLTTRSIMTSNQHELFTKFLKLKPPVFKGAESEDAYDFLADCHELLHKMDIVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="28852" PGL_stop="28459"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28852" e_stop="28459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="28852" e_stop="28459" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28852" stop="28459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394130" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAGGTTCTGGGAACTTTGTGGCATGGAGGAAGGTTTTAACCCAGTTCAATTCATATACATCGATCCTACGGTGATTATAGATTATACATGTAAAGCTTTATTGAAGGAACAACTTAAAGTTTTGGCTTCTGGATTTATCGTCATCTGAAGAATCATCAATGCATCACTCTTGTTTCTGTGGTAACATTCAGTTTACGATGGTAGTTAGTAAGTAAATTGAAAGGCTTTGCGCCATTGGTGTCAGATTTTGGGTTTTCAAATTTCTTGTTGTACCCTAGATTTTACCGCTGCTTGATTAGTTTTACTACTCCCATCCTGTTCCATTTTACTTTGATTGTCATAGTTGACTTGACACAACTTAATTCAAAAATGAAAGCATTGATCTTAAACAT</gDNA_template>
            <first_frame> W  R  F  W  E  L  C  G  M  E  E  G  F  N  P  V  Q  F  I  Y  I  D  P  T  V  I  I  D  Y  T  C  K  A  L  L  K  E  Q  L  K  V  L  A  S  G  F  I  V  I  *  R  I  I  N  A  S  L  L  F  L  W  *  H  S  V  Y  D  G  S  *  *  V  N  *  K  A  L  R  H  W  C  Q  I  L  G  F  Q  I  S  C  C  T  L  D  F  T  A  A  *  L  V  L  L  L  P  S  C  S  I  L  L  *  L  S  *  L  T  *  H  N  L  I  Q  K  *  K  H  *  S  *  T  </first_frame>
            <second_frame>  G  G  S  G  N  F  V  A  W  R  K  V  L  T  Q  F  N  S  Y  T  S  I  L  R  *  L  *  I  I  H  V  K  L  Y  *  R  N  N  L  K  F  W  L  L  D  L  S  S  S  E  E  S  S  M  H  H  S  C  F  C  G  N  I  Q  F  T  M  V  V  S  K  *  I  E  R  L  C  A  I  G  V  R  F  W  V  F  K  F  L  V  V  P  *  I  L  P  L  L  D  *  F  Y  Y  S  H  P  V  P  F  Y  F  D  C  H  S  *  L  D  T  T  *  F  K  N  E  S  I  D  L  K  H </second_frame>
            <third_frame>   E  V  L  G  T  L  W  H  G  G  R  F  *  P  S  S  I  H  I  H  R  S  Y  G  D  Y  R  L  Y  M  *  S  F  I  E  G  T  T  *  S  F  G  F  W  I  Y  R  H  L  K  N  H  Q  C  I  T  L  V  S  V  V  T  F  S  L  R  W  *  L  V  S  K  L  K  G  F  A  P  L  V  S  D  F  G  F  S  N  F  L  L  Y  P  R  F  Y  R  C  L  I  S  F  T  T  P  I  L  F  H  F  T  L  I  V  I  V  D  L  T  Q  L  N  S  K  M  K  A  L  I  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0008H22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="45944" PGL_stop="29053"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45891" e_stop="45533"/>
            <exon e_start="40402" e_stop="40319"/>
            <exon e_start="40234" e_stop="40133"/>
            <exon e_start="38526" e_stop="38482"/>
            <exon e_start="38364" e_stop="38290"/>
            <exon e_start="38171" e_stop="38076"/>
            <exon e_start="37547" e_stop="37470"/>
            <exon e_start="36606" e_stop="36515"/>
            <exon e_start="36267" e_stop="36206"/>
            <exon e_start="36040" e_stop="35996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.986" e_score="0.997"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.997" e_score="0.990"/>
          <exon-intron don_prob="0.959" acc_prob="0.847" e_score="0.933"/>
          <exon-intron don_prob="0.914" acc_prob="0.917" e_score="0.960"/>
          <exon-intron don_prob="0.832" acc_prob="0.926" e_score="0.927"/>
          <exon-intron don_prob="0.920" acc_prob="0.998" e_score="0.987"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.946"/>
          <exon-intron don_prob="0.995" acc_prob="0.630" e_score="0.952"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="45891" e_stop="45533" e_length="359"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.986">
            <gDNA_intron_boundary i_start="45532" i_stop="40403" i_length="5130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40402" e_stop="40319" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40318" i_stop="40235" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="40234" e_stop="40133" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40132" i_stop="38527" i_length="1606"/>
          </intron>
          <exon e_serial="4" e_score="0.933">
            <gDNA_exon_boundary e_start="38526" e_stop="38482" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.847">
            <gDNA_intron_boundary i_start="38481" i_stop="38365" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="38364" e_stop="38290" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.914" acc_prob="0.917">
            <gDNA_intron_boundary i_start="38289" i_stop="38172" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="0.927">
            <gDNA_exon_boundary e_start="38171" e_stop="38076" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.832" acc_prob="0.926">
            <gDNA_intron_boundary i_start="38075" i_stop="37548" i_length="528"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="37547" e_stop="37470" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.920" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37469" i_stop="36607" i_length="863"/>
          </intron>
          <exon e_serial="8" e_score="0.946">
            <gDNA_exon_boundary e_start="36606" e_stop="36515" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36514" i_stop="36268" i_length="247"/>
          </intron>
          <exon e_serial="9" e_score="0.952">
            <gDNA_exon_boundary e_start="36267" e_stop="36206" e_length="62"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.630">
            <gDNA_intron_boundary i_start="36205" i_stop="36041" i_length="165"/>
          </intron>
          <exon e_serial="10" e_score="0.933">
            <gDNA_exon_boundary e_start="36040" e_stop="35996" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45891" stop="45533"/>
              <exon start="40402" stop="40319"/>
              <exon start="40234" stop="40174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45890" stop="45533"/>
              <exon start="40402" stop="40319"/>
              <exon start="40234" stop="40133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45744" stop="45533"/>
              <exon start="40402" stop="40319"/>
              <exon start="40234" stop="40185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45621" stop="45533"/>
              <exon start="40402" stop="40319"/>
              <exon start="40234" stop="40133"/>
              <exon start="38526" stop="38482"/>
              <exon start="38364" stop="38290"/>
              <exon start="38171" stop="38076"/>
              <exon start="37547" stop="37470"/>
              <exon start="36606" stop="36515"/>
              <exon start="36267" stop="36206"/>
              <exon start="36040" stop="35996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45621" stop="45533"/>
              <exon start="40402" stop="40319"/>
              <exon start="40234" stop="40133"/>
              <exon start="38526" stop="38482"/>
              <exon start="38364" stop="38290"/>
              <exon start="38171" stop="38076"/>
              <exon start="37547" stop="37470"/>
              <exon start="36606" stop="36515"/>
              <exon start="36267" stop="36206"/>
              <exon start="36040" stop="36011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAAAGCTAAGCCAGAGGATCATCCCAGATCTCCAACTTCATCGTTCAAATCACCCTTTTTTTCAACTTCGAAGTCGAAATTGCTTCCATTGAAGCTCCAAAATCCATATGGTGATGGCTACAATCATCTGTAGTATTGATTGTTTTGGTATCAGTAATTGACTAGTTACTACACAGTCCGTTTCCCCCTCATTTTTCATCAATTCTGTTTCGTTTTACTTTTTACACGAACAGAAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAG : AATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTG : GACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAG : TTTTATAAGTGGTTCGCGGATCTTGAAGCAGCCATGAAATTAGAG : TCTGAAGAAAAATATCAGCATTATGCCAGCACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG : GTGGATGAAACACTTGACTTGTTCAATGAGTTGCAATTGCAGCATCAAGCAGTGGCAACAAAGACAAGAACTCTTCATGATGCGTGCGATAGACTG : CTTTTGGAGAAGCAGAAAATAATTGAGTTTGCAGAATCACTTCACAATAAGCTCAATTACTTTGATGAATTGGAGAAT : GTTGCTACCACTTTTTATTCTCCTAGCATGAGCGTTGGTAGTACAAATTTTCTTCCATTGCTAAAGAGACTTGATGAGTGCATATCCTAAGT : AGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG : TCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTT</gDNA_template>
            <first_frame> P  K  A  K  P  E  D  H  P  R  S  P  T  S  S  F  K  S  P  F  F  S  T  S  K  S  K  L  L  P  L  K  L  Q  N  P  Y  G  D  G  Y  N  H  L  *  Y  *  L  F  W  Y  Q  *  L  T  S  Y  Y  T  V  R  F  P  L  I  F  H  Q  F  C  F  V  L  L  F  T  R  T  E  T  V  A  K  *  W  K  K  R  V  M  I  I  L  W  R  Q  R  Q  G  R  G  F  S  S  P  K  L  F  P  K  A  I  I  S  L  L  L  G  N  R :   M  L  C  *  Q  S  N  N  Q  Q  P  Y  K  H  F  P  M  Q  L  P  R  D  L  S  R  P  I  W :   T  K  F  L  D  M  I  T  A  S  L  F  Q  Q  S  L  V  L  *  R  I  Q  G  P  L  K  Q  S  *  *  I  Q  I  S :   F  I  S  G  S  R  I  L  K  Q  P  *  N  *  S :   L  K  K  N  I  S  I  M  P  A  P  *  Q  S  R  F  R  P  A  I  V  Y  F  T  R :   W  M  K  H  L  T  C  S  M  S  C  N  C  S  I  K  Q  W  Q  Q  R  Q  E  L  F  M  M  R  A  I  D  C :   F  W  R  S  R  K  *  L  S  L  Q  N  H  F  T  I  S  S  I  T  L  M  N  W  R  M :   L  L  P  L  F  I  L  L  A  *  A  L  V  V  Q  I  F  F  H  C  *  R  D  L  M  S  A  Y  P  K   : *  S  S  N  P  Q  Y  A  E  C  S  I  Y  L  V  K  F  R  Q  L  Q  :  S  R  A  L  G  M  I  R  T  H  V  L  S  V  L </first_frame>
            <second_frame>  P  K  L  S  Q  R  I  I  P  D  L  Q  L  H  R  S  N  H  P  F  F  Q  L  R  S  R  N  C  F  H  *  S  S  K  I  H  M  V  M  A  T  I  I  C  S  I  D  C  F  G  I  S  N  *  L  V  T  T  Q  S  V  S  P  S  F  F  I  N  S  V  S  F  Y  F  L  H  E  Q  K  Q  L  Q  S  S  G  R  R  E  *  *  *  Y  Y  G  G  N  D  K  A  G  G  S  Q  V  R  S  C  F  Q  R  L  *  F  R  F  Y  L  G  T   : E  C  S  V  N  R  A  T  I  S  S  H  T  S  T  F  P  C  S  C  R  E  T  F  P  V  Q  F   : G  P  S  F  W  T  *  *  Q  P  L  C  F  N  K  A  *  F  S  R  G  F  R  G  H  *  S  S  P  S  E  Y  K  S   : V  L  *  V  V  R  G  S  *  S  S  H  E  I  R   : V  *  R  K  I  S  A  L  C  Q  H  L  N  R  A  D  S  D  L  R  *  Y  T  S  P   : G  G  *  N  T  *  L  V  Q  *  V  A  I  A  A  S  S  S  G  N  K  D  K  N  S  S  *  C  V  R  *  T   : A  F  G  E  A  E  N  N  *  V  C  R  I  T  S  Q  *  A  Q  L  L  *  *  I  G  E   : C  C  Y  H  F  L  F  S  *  H  E  R  W  *  Y  K  F  S  S  I  A  K  E  T  *  *  V  H  I  L  S  :  R  V  V  T  H  N  M  Q  S  A  A  F  I  W  S  S  F  D  N  F  S :   L  E  L  W  E  *  F  A  L  T  F  F  P  F   </second_frame>
            <third_frame>   Q  S  *  A  R  G  S  S  Q  I  S  N  F  I  V  Q  I  T  L  F  F  N  F  E  V  E  I  A  S  I  E  A  P  K  S  I  W  *  W  L  Q  S  S  V  V  L  I  V  L  V  S  V  I  D  *  L  L  H  S  P  F  P  P  H  F  S  S  I  L  F  R  F  T  F  Y  T  N  R  N  S  C  K  V  V  E  E  E  S  D  D  N  T  M  A  A  T  T  R  P  G  V  L  K  S  E  A  V  S  K  G  Y  N  F  A  S  T  W  E  Q  :  N  A  L  L  T  E  Q  Q  S  A  A  I  Q  A  L  S  H  A  V  A  E  R  P  F  P  S  N  L  :  D  Q  V  S  G  H  D  N  S  L  S  V  S  T  K  L  S  S  L  E  D  S  G  A  I  E  A  V  L  V  N  T  N  Q  :  F  Y  K  W  F  A  D  L  E  A  A  M  K  L  E  :  S  E  E  K  Y  Q  H  Y  A  S  T  L  T  E  Q  I  Q  T  C  D  S  I  L  H  Q  :  V  D  E  T  L  D  L  F  N  E  L  Q  L  Q  H  Q  A  V  A  T  K  T  R  T  L  H  D  A  C  D  R  L  :  L  L  E  K  Q  K  I  I  E  F  A  E  S  L  H  N  K  L  N  Y  F  D  E  L  E  N  :  V  A  T  T  F  Y  S  P  S  M  S  V  G  S  T  N  F  L  P  L  L  K  R  L  D  E  C  I  S  *  V :   E  *  *  P  T  I  C  R  V  Q  H  L  F  G  Q  V  S  T  T  S   : V  S  S  S  G  N  D  S  H  S  R  S  F  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45724" stop="45533"/>
                    <exon start="40402" stop="40319"/>
                    <exon start="40234" stop="40133"/>
                    <exon start="38526" stop="38482"/>
                    <exon start="38364" stop="38290"/>
                    <exon start="38171" stop="38076"/>
                    <exon start="37547" stop="37470"/>
                    <exon start="36606" stop="36517"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLHSPFPPHFSSILFRFTFYTNRNSCKVVEEESDDNTMAATTRPGVLKSEAVSKGYNFASTWEQNALLTEQQSAAIQALSHAVAERPFPSNLDQVSGHDNSLSVSTKLSSLEDSGAIEAVLVNTNQFYKWFADLEAAMKLESEEKYQHYASTLTEQIQTCDSILHQVDETLDLFNELQLQHQAVATKTRTLHDACDRLLLEKQKIIEFAESLHNKLNYFDELENVATTFYSPSMSVGSTNFLPLLKRLDECIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36467" e_stop="36206"/>
            <exon e_start="36040" e_stop="35978"/>
            <exon e_start="35896" e_stop="35795"/>
            <exon e_start="35626" e_stop="35522"/>
            <exon e_start="35411" e_stop="35319"/>
            <exon e_start="34781" e_stop="34693"/>
            <exon e_start="30876" e_stop="30657"/>
            <exon e_start="29466" e_stop="29379"/>
            <exon e_start="29244" e_stop="29053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.630" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.887" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36467" e_stop="36206" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.630">
            <gDNA_intron_boundary i_start="36205" i_stop="36041" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36040" e_stop="35978" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="35977" i_stop="35897" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35896" e_stop="35795" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35794" i_stop="35627" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35626" e_stop="35522" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="35521" i_stop="35412" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35411" e_stop="35319" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.931" acc_prob="0.906">
            <gDNA_intron_boundary i_start="35318" i_stop="34782" i_length="537"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34781" e_stop="34693" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.980" acc_prob="0.836">
            <gDNA_intron_boundary i_start="34692" i_stop="30877" i_length="3816"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30876" e_stop="30657" e_length="220"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30656" i_stop="29467" i_length="1190"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29466" e_stop="29379" e_length="88"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.887">
            <gDNA_intron_boundary i_start="29378" i_stop="29245" i_length="134"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29244" e_stop="29053" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36467" stop="36206"/>
              <exon start="36040" stop="35978"/>
              <exon start="35896" stop="35795"/>
              <exon start="35626" stop="35522"/>
              <exon start="35411" stop="35319"/>
              <exon start="34781" stop="34693"/>
              <exon start="30876" stop="30837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36464" stop="36206"/>
              <exon start="36040" stop="35978"/>
              <exon start="35896" stop="35795"/>
              <exon start="35626" stop="35522"/>
              <exon start="35411" stop="35319"/>
              <exon start="34781" stop="34733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35894" stop="35795"/>
              <exon start="35626" stop="35522"/>
              <exon start="35411" stop="35319"/>
              <exon start="34781" stop="34693"/>
              <exon start="30876" stop="30722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35882" stop="35795"/>
              <exon start="35626" stop="35522"/>
              <exon start="35411" stop="35319"/>
              <exon start="34781" stop="34693"/>
              <exon start="30876" stop="30812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30876" stop="30657"/>
              <exon start="29466" stop="29379"/>
              <exon start="29244" stop="29053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTGCAATGTTGTACCATCCATGCTTTTCTTTGGTTATTTGTGAAGTTTACTATGTGGACATGTCTAGAGTCACAGGTTTCTTCTAGGGATATGACTTCTTTTATCAAGATTAAGTTCTATTGAGTTAAGCTTGTAAATCTATGCATAAGAGCACAAATAACCTTTGTGTTTCTCCTCTGCATCACTGAAGATATGTAGAGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG : TCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTTAGAAGCACTTCTTCTCAG : GTTCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAG : CTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTG : ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG : GTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT : GTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGAGGAAGTCATTGGCTGGGTTACCTCCAACGCTAGACAGGATTCTAGCTAATGTTCATGAACGATTAACTTTTCGTGCTCGCACCTATATCCGTGATGAG : ATTGCAAATTATCTTCCTTCAGACGAGGATCTGGGATTACCCTAAGAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCT : AAGTTTGCATTCTCTTGTGAAGGTTGCAGTTTGATATATGGAGGTTCTGTAAATCAATATCTTGCTCAAGGGTGTGAACTGACTATTCTTGACCTGTGATTCTAGTTGGATGCATATATTCCATTTTTATATTTGTGCAGGACTAATATATTAGAAGCACACGTTTAGGTGCTATCCCTTCTGAAAAAAGAA</gDNA_template>
            <first_frame> H  C  N  V  V  P  S  M  L  F  F  G  Y  L  *  S  L  L  C  G  H  V  *  S  H  R  F  L  L  G  I  *  L  L  L  S  R  L  S  S  I  E  L  S  L  *  I  Y  A  *  E  H  K  *  P  L  C  F  S  S  A  S  L  K  I  C  R  E  *  *  P  T  I  C  R  V  Q  H  L  F  G  Q  V  S  T  T  S   : V  S  S  S  G  N  D  S  H  S  R  S  F  R  S  *  K  H  F  F  S   : G  S  G  C  N  K  K  Q  R  W  *  Q  D  I  F  C  R  G  Y  R  A  I  Y  N  I  C  T  I  Q  G  C  S  K  *   : A  *  A  Y  P  G  G  N  *  K  Q  N  T  *  K  R  V  Y  S  T  S  *  R  M  P  Q  T  L  L  R  T  A  P  F  L   : D  K  R  Y  S  A  T  A  D  L  *  I  F  *  E  R  S  I  V  V  F  N  *  I  W  M  C  I  F  N  A   : G  V  S  A  G  A  S  T  L  Q  S  L  L  S  I  I  F  R  G  H  F  E  F  D  S  S  C  R  S  S  :  V  Y  F  P  L  *  Y  I  A  S  *  T  Y  S  R  N  K  P  G  C  S  L  *  T  G  *  Y  P  Q  S  *  S  S  R  R  T  A  E  Q  T  E  E  V  I  G  W  V  T  S  N  A  R  Q  D  S  S  *  C  S  *  T  I  N  F  S  C  S  H  L  Y  P  *  *   : D  C  K  L  S  S  F  R  R  G  S  G  I  T  L  R  S  W  S  N  L  F  Q  Q  N  W  I  H  H  L :   S  L  H  S  L  V  K  V  A  V  *  Y  M  E  V  L  *  I  N  I  L  L  K  G  V  N  *  L  F  L  T  C  D  S  S  W  M  H  I  F  H  F  Y  I  C  A  G  L  I  Y  *  K  H  T  F  R  C  Y  P  F  *  K  K   </first_frame>
            <second_frame>  T  A  M  L  Y  H  P  C  F  S  L  V  I  C  E  V  Y  Y  V  D  M  S  R  V  T  G  F  F  *  G  Y  D  F  F  Y  Q  D  *  V  L  L  S  *  A  C  K  S  M  H  K  S  T  N  N  L  C  V  S  P  L  H  H  *  R  Y  V  E  S  S  N  P  Q  Y  A  E  C  S  I  Y  L  V  K  F  R  Q  L  Q  :  S  R  A  L  G  M  I  R  T  H  V  L  S  V  L  R  S  T  S  S  Q  :  V  Q  A  A  I  R  S  S  G  G  N  K  T  S  F  A  E  G  I  E  P  S  I  I  Y  V  R  F  K  A  A  A  N  E  :  L  K  P  I  L  E  E  I  E  S  R  T  P  R  K  E  Y  I  Q  L  L  E  E  C  H  K  L  Y  C  E  Q  R  L  S  L  :  I  R  G  I  V  Q  Q  R  I  S  E  F  S  R  K  E  A  L  S  S  L  T  R  S  G  C  A  Y  L  M  Q  :  V  C  Q  L  E  H  Q  L  F  N  H  F  F  P  S  S  S  E  D  I  S  S  L  T  P  L  V  D  P  L :   C  T  F  L  Y  D  T  S  R  P  K  L  I  H  E  T  N  L  D  V  L  C  E  L  V  N  I  L  K  V  E  V  L  G  E  Q  L  S  R  R  R  K  S  L  A  G  L  P  P  T  L  D  R  I  L  A  N  V  H  E  R  L  T  F  R  A  R  T  Y  I  R  D  E  :  I  A  N  Y  L  P  S  D  E  D  L  G  L  P  *  E  V  G  A  I  C  F  S  R  T  G  F  T  I   : *  V  C  I  L  L  *  R  L  Q  F  D  I  W  R  F  C  K  S  I  S  C  S  R  V  *  T  D  Y  S  *  P  V  I  L  V  G  C  I  Y  S  I  F  I  F  V  Q  D  *  Y  I  R  S  T  R  L  G  A  I  P  S  E  K  R  </second_frame>
            <third_frame>   L  Q  C  C  T  I  H  A  F  L  W  L  F  V  K  F  T  M  W  T  C  L  E  S  Q  V  S  S  R  D  M  T  S  F  I  K  I  K  F  Y  *  V  K  L  V  N  L  C  I  R  A  Q  I  T  F  V  F  L  L  C  I  T  E  D  M  *  R  V  V  T  H  N  M  Q  S  A  A  F  I  W  S  S  F  D  N  F  S :   L  E  L  W  E  *  F  A  L  T  F  F  P  F  L  E  A  L  L  L  R :   F  R  L  Q  *  E  A  A  V  V  T  R  H  L  L  P  R  V  *  S  H  L  *  Y  M  Y  D  S  R  L  Q  Q  M  S :   L  S  L  S  W  R  K  L  K  A  E  H  L  E  K  S  I  F  N  F  L  K  N  A  T  N  S  I  A  N  S  A  F  P  * :   *  E  V  *  C  N  S  G  S  L  N  F  L  G  K  K  H  C  R  L  *  L  D  L  D  V  H  I  *  C  R :   C  V  S  W  S  I  N  S  S  I  T  S  F  H  H  L  Q  R  T  F  R  V  *  L  L  L  *  I  L   : C  V  L  S  S  M  I  H  R  V  L  N  L  F  T  K  Q  T  W  M  F  F  V  N  W  L  I  S  S  K  L  K  F  *  E  N  S  *  A  D  G  G  S  H  W  L  G  Y  L  Q  R  *  T  G  F  *  L  M  F  M  N  D  *  L  F  V  L  A  P  I  S  V  M  R :   L  Q  I  I  F  L  Q  T  R  I  W  D  Y  P  K  K  L  E  Q  S  V  S  A  E  L  D  S  P  S  :  K  F  A  F  S  C  E  G  C  S  L  I  Y  G  G  S  V  N  Q  Y  L  A  Q  G  C  E  L  T  I  L  D  L  *  F  *  L  D  A  Y  I  P  F  L  Y  L  C  R  T  N  I  L  E  A  H  V  *  V  L  S  L  L  K  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36277" stop="36206"/>
                    <exon start="36040" stop="35978"/>
                    <exon start="35896" stop="35795"/>
                    <exon start="35626" stop="35522"/>
                    <exon start="35411" stop="35319"/>
                    <exon start="34781" stop="34693"/>
                    <exon start="30876" stop="30657"/>
                    <exon start="29466" stop="29422"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYVESSNPQYAECSIYLVKFRQLQSRALGMIRTHVLSVLRSTSSQVQAAIRSSGGNKTSFAEGIEPSIIYVRFKAAANELKPILEEIESRTPRKEYIQLLEECHKLYCEQRLSLIRGIVQQRISEFSRKEALSSLTRSGCAYLMQVCQLEHQLFNHFFPSSSEDISSLTPLVDPLCTFLYDTSRPKLIHETNLDVLCELVNILKVEVLGEQLSRRRKSLAGLPPTLDRILANVHERLTFRARTYIRDEIANYLPSDEDLGLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="36467" e_stop="36206"/>
            <exon e_start="36040" e_stop="35978"/>
            <exon e_start="35896" e_stop="35795"/>
            <exon e_start="35626" e_stop="35522"/>
            <exon e_start="35411" e_stop="35319"/>
            <exon e_start="34781" e_stop="34693"/>
            <exon e_start="30876" e_stop="30657"/>
            <exon e_start="30286" e_stop="30266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.630" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36467" e_stop="36206" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.630">
            <gDNA_intron_boundary i_start="36205" i_stop="36041" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36040" e_stop="35978" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="35977" i_stop="35897" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35896" e_stop="35795" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35794" i_stop="35627" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35626" e_stop="35522" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="35521" i_stop="35412" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35411" e_stop="35319" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.931" acc_prob="0.906">
            <gDNA_intron_boundary i_start="35318" i_stop="34782" i_length="537"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34781" e_stop="34693" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.980" acc_prob="0.836">
            <gDNA_intron_boundary i_start="34692" i_stop="30877" i_length="3816"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30876" e_stop="30657" e_length="220"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="30656" i_stop="30287" i_length="370"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="30286" e_stop="30266" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36467" stop="36206"/>
              <exon start="36040" stop="35978"/>
              <exon start="35896" stop="35795"/>
              <exon start="35626" stop="35522"/>
              <exon start="35411" stop="35319"/>
              <exon start="34781" stop="34693"/>
              <exon start="30876" stop="30837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36464" stop="36206"/>
              <exon start="36040" stop="35978"/>
              <exon start="35896" stop="35795"/>
              <exon start="35626" stop="35522"/>
              <exon start="35411" stop="35319"/>
              <exon start="34781" stop="34733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35894" stop="35795"/>
              <exon start="35626" stop="35522"/>
              <exon start="35411" stop="35319"/>
              <exon start="34781" stop="34693"/>
              <exon start="30876" stop="30657"/>
              <exon start="30286" stop="30266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35894" stop="35795"/>
              <exon start="35626" stop="35522"/>
              <exon start="35411" stop="35319"/>
              <exon start="34781" stop="34693"/>
              <exon start="30876" stop="30722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35882" stop="35795"/>
              <exon start="35626" stop="35522"/>
              <exon start="35411" stop="35319"/>
              <exon start="34781" stop="34693"/>
              <exon start="30876" stop="30812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265414" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTGCAATGTTGTACCATCCATGCTTTTCTTTGGTTATTTGTGAAGTTTACTATGTGGACATGTCTAGAGTCACAGGTTTCTTCTAGGGATATGACTTCTTTTATCAAGATTAAGTTCTATTGAGTTAAGCTTGTAAATCTATGCATAAGAGCACAAATAACCTTTGTGTTTCTCCTCTGCATCACTGAAGATATGTAGAGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG : TCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTTAGAAGCACTTCTTCTCAG : GTTCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAG : CTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTG : ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG : GTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT : GTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGAGGAAGTCATTGGCTGGGTTACCTCCAACGCTAGACAGGATTCTAGCTAATGTTCATGAACGATTAACTTTTCGTGCTCGCACCTATATCCGTGATGAG : GTTATCATGATAGCTTTCTCG</gDNA_template>
            <first_frame> H  C  N  V  V  P  S  M  L  F  F  G  Y  L  *  S  L  L  C  G  H  V  *  S  H  R  F  L  L  G  I  *  L  L  L  S  R  L  S  S  I  E  L  S  L  *  I  Y  A  *  E  H  K  *  P  L  C  F  S  S  A  S  L  K  I  C  R  E  *  *  P  T  I  C  R  V  Q  H  L  F  G  Q  V  S  T  T  S   : V  S  S  S  G  N  D  S  H  S  R  S  F  R  S  *  K  H  F  F  S   : G  S  G  C  N  K  K  Q  R  W  *  Q  D  I  F  C  R  G  Y  R  A  I  Y  N  I  C  T  I  Q  G  C  S  K  *   : A  *  A  Y  P  G  G  N  *  K  Q  N  T  *  K  R  V  Y  S  T  S  *  R  M  P  Q  T  L  L  R  T  A  P  F  L   : D  K  R  Y  S  A  T  A  D  L  *  I  F  *  E  R  S  I  V  V  F  N  *  I  W  M  C  I  F  N  A   : G  V  S  A  G  A  S  T  L  Q  S  L  L  S  I  I  F  R  G  H  F  E  F  D  S  S  C  R  S  S  :  V  Y  F  P  L  *  Y  I  A  S  *  T  Y  S  R  N  K  P  G  C  S  L  *  T  G  *  Y  P  Q  S  *  S  S  R  R  T  A  E  Q  T  E  E  V  I  G  W  V  T  S  N  A  R  Q  D  S  S  *  C  S  *  T  I  N  F  S  C  S  H  L  Y  P  *  *   : G  Y  H  D  S  F  L  </first_frame>
            <second_frame>  T  A  M  L  Y  H  P  C  F  S  L  V  I  C  E  V  Y  Y  V  D  M  S  R  V  T  G  F  F  *  G  Y  D  F  F  Y  Q  D  *  V  L  L  S  *  A  C  K  S  M  H  K  S  T  N  N  L  C  V  S  P  L  H  H  *  R  Y  V  E  S  S  N  P  Q  Y  A  E  C  S  I  Y  L  V  K  F  R  Q  L  Q  :  S  R  A  L  G  M  I  R  T  H  V  L  S  V  L  R  S  T  S  S  Q  :  V  Q  A  A  I  R  S  S  G  G  N  K  T  S  F  A  E  G  I  E  P  S  I  I  Y  V  R  F  K  A  A  A  N  E  :  L  K  P  I  L  E  E  I  E  S  R  T  P  R  K  E  Y  I  Q  L  L  E  E  C  H  K  L  Y  C  E  Q  R  L  S  L  :  I  R  G  I  V  Q  Q  R  I  S  E  F  S  R  K  E  A  L  S  S  L  T  R  S  G  C  A  Y  L  M  Q  :  V  C  Q  L  E  H  Q  L  F  N  H  F  F  P  S  S  S  E  D  I  S  S  L  T  P  L  V  D  P  L :   C  T  F  L  Y  D  T  S  R  P  K  L  I  H  E  T  N  L  D  V  L  C  E  L  V  N  I  L  K  V  E  V  L  G  E  Q  L  S  R  R  R  K  S  L  A  G  L  P  P  T  L  D  R  I  L  A  N  V  H  E  R  L  T  F  R  A  R  T  Y  I  R  D  E  :  V  I  M  I  A  F  S </second_frame>
            <third_frame>   L  Q  C  C  T  I  H  A  F  L  W  L  F  V  K  F  T  M  W  T  C  L  E  S  Q  V  S  S  R  D  M  T  S  F  I  K  I  K  F  Y  *  V  K  L  V  N  L  C  I  R  A  Q  I  T  F  V  F  L  L  C  I  T  E  D  M  *  R  V  V  T  H  N  M  Q  S  A  A  F  I  W  S  S  F  D  N  F  S :   L  E  L  W  E  *  F  A  L  T  F  F  P  F  L  E  A  L  L  L  R :   F  R  L  Q  *  E  A  A  V  V  T  R  H  L  L  P  R  V  *  S  H  L  *  Y  M  Y  D  S  R  L  Q  Q  M  S :   L  S  L  S  W  R  K  L  K  A  E  H  L  E  K  S  I  F  N  F  L  K  N  A  T  N  S  I  A  N  S  A  F  P  * :   *  E  V  *  C  N  S  G  S  L  N  F  L  G  K  K  H  C  R  L  *  L  D  L  D  V  H  I  *  C  R :   C  V  S  W  S  I  N  S  S  I  T  S  F  H  H  L  Q  R  T  F  R  V  *  L  L  L  *  I  L   : C  V  L  S  S  M  I  H  R  V  L  N  L  F  T  K  Q  T  W  M  F  F  V  N  W  L  I  S  S  K  L  K  F  *  E  N  S  *  A  D  G  G  S  H  W  L  G  Y  L  Q  R  *  T  G  F  *  L  M  F  M  N  D  *  L  F  V  L  A  P  I  S  V  M  R :   L  S  *  *  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36277" stop="36206"/>
                    <exon start="36040" stop="35978"/>
                    <exon start="35896" stop="35795"/>
                    <exon start="35626" stop="35522"/>
                    <exon start="35411" stop="35319"/>
                    <exon start="34781" stop="34693"/>
                    <exon start="30876" stop="30657"/>
                    <exon start="30286" stop="30266"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYVESSNPQYAECSIYLVKFRQLQSRALGMIRTHVLSVLRSTSSQVQAAIRSSGGNKTSFAEGIEPSIIYVRFKAAANELKPILEEIESRTPRKEYIQLLEECHKLYCEQRLSLIRGIVQQRISEFSRKEALSSLTRSGCAYLMQVCQLEHQLFNHFFPSSSEDISSLTPLVDPLCTFLYDTSRPKLIHETNLDVLCELVNILKVEVLGEQLSRRRKSLAGLPPTLDRILANVHERLTFRARTYIRDEVIMIAFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="36078" e_stop="35978"/>
            <exon e_start="35896" e_stop="35795"/>
            <exon e_start="35626" e_stop="35522"/>
            <exon e_start="35411" e_stop="35319"/>
            <exon e_start="34781" e_stop="34693"/>
            <exon e_start="30876" e_stop="30657"/>
            <exon e_start="30286" e_stop="30266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="0.861"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.861">
            <gDNA_exon_boundary e_start="36078" e_stop="35978" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="35977" i_stop="35897" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35896" e_stop="35795" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35794" i_stop="35627" i_length="168"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35626" e_stop="35522" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="35521" i_stop="35412" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35411" e_stop="35319" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.931" acc_prob="0.906">
            <gDNA_intron_boundary i_start="35318" i_stop="34782" i_length="537"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34781" e_stop="34693" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.836">
            <gDNA_intron_boundary i_start="34692" i_stop="30877" i_length="3816"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30876" e_stop="30657" e_length="220"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="30656" i_stop="30287" i_length="370"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30286" e_stop="30266" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36078" stop="35978"/>
              <exon start="35896" stop="35795"/>
              <exon start="35626" stop="35522"/>
              <exon start="35411" stop="35319"/>
              <exon start="34781" stop="34693"/>
              <exon start="30876" stop="30796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35894" stop="35795"/>
              <exon start="35626" stop="35522"/>
              <exon start="35411" stop="35319"/>
              <exon start="34781" stop="34693"/>
              <exon start="30876" stop="30657"/>
              <exon start="30286" stop="30266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35894" stop="35795"/>
              <exon start="35626" stop="35522"/>
              <exon start="35411" stop="35319"/>
              <exon start="34781" stop="34693"/>
              <exon start="30876" stop="30722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35882" stop="35795"/>
              <exon start="35626" stop="35522"/>
              <exon start="35411" stop="35319"/>
              <exon start="34781" stop="34693"/>
              <exon start="30876" stop="30812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265414" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCTCTGTCTGTGTTACCTTGGCCCCCTTGTAACAGTCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTTAGAAGCACTTCTTCTCAG : GTTCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAG : CTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTG : ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG : GTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT : GTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGAGGAAGTCATTGGCTGGGTTACCTCCAACGCTAGACAGGATTCTAGCTAATGTTCATGAACGATTAACTTTTCGTGCTCGCACCTATATCCGTGATGAG : GTTATCATGATAGCTTTCTCG</gDNA_template>
            <first_frame> F  S  L  S  V  L  P  W  P  P  C  N  S  L  E  L  W  E  *  F  A  L  T  F  F  P  F  L  E  A  L  L  L  R :   F  R  L  Q  *  E  A  A  V  V  T  R  H  L  L  P  R  V  *  S  H  L  *  Y  M  Y  D  S  R  L  Q  Q  M  S :   L  S  L  S  W  R  K  L  K  A  E  H  L  E  K  S  I  F  N  F  L  K  N  A  T  N  S  I  A  N  S  A  F  P  * :   *  E  V  *  C  N  S  G  S  L  N  F  L  G  K  K  H  C  R  L  *  L  D  L  D  V  H  I  *  C  R :   C  V  S  W  S  I  N  S  S  I  T  S  F  H  H  L  Q  R  T  F  R  V  *  L  L  L  *  I  L   : C  V  L  S  S  M  I  H  R  V  L  N  L  F  T  K  Q  T  W  M  F  F  V  N  W  L  I  S  S  K  L  K  F  *  E  N  S  *  A  D  G  G  S  H  W  L  G  Y  L  Q  R  *  T  G  F  *  L  M  F  M  N  D  *  L  F  V  L  A  P  I  S  V  M  R :   L  S  *  *  L  S   </first_frame>
            <second_frame>  S  L  C  L  C  Y  L  G  P  L  V  T  V  S  S  S  G  N  D  S  H  S  R  S  F  R  S  *  K  H  F  F  S   : G  S  G  C  N  K  K  Q  R  W  *  Q  D  I  F  C  R  G  Y  R  A  I  Y  N  I  C  T  I  Q  G  C  S  K  *   : A  *  A  Y  P  G  G  N  *  K  Q  N  T  *  K  R  V  Y  S  T  S  *  R  M  P  Q  T  L  L  R  T  A  P  F  L   : D  K  R  Y  S  A  T  A  D  L  *  I  F  *  E  R  S  I  V  V  F  N  *  I  W  M  C  I  F  N  A   : G  V  S  A  G  A  S  T  L  Q  S  L  L  S  I  I  F  R  G  H  F  E  F  D  S  S  C  R  S  S  :  V  Y  F  P  L  *  Y  I  A  S  *  T  Y  S  R  N  K  P  G  C  S  L  *  T  G  *  Y  P  Q  S  *  S  S  R  R  T  A  E  Q  T  E  E  V  I  G  W  V  T  S  N  A  R  Q  D  S  S  *  C  S  *  T  I  N  F  S  C  S  H  L  Y  P  *  *   : G  Y  H  D  S  F  L  </second_frame>
            <third_frame>   L  S  V  C  V  T  L  A  P  L  *  Q  S  R  A  L  G  M  I  R  T  H  V  L  S  V  L  R  S  T  S  S  Q  :  V  Q  A  A  I  R  S  S  G  G  N  K  T  S  F  A  E  G  I  E  P  S  I  I  Y  V  R  F  K  A  A  A  N  E  :  L  K  P  I  L  E  E  I  E  S  R  T  P  R  K  E  Y  I  Q  L  L  E  E  C  H  K  L  Y  C  E  Q  R  L  S  L  :  I  R  G  I  V  Q  Q  R  I  S  E  F  S  R  K  E  A  L  S  S  L  T  R  S  G  C  A  Y  L  M  Q  :  V  C  Q  L  E  H  Q  L  F  N  H  F  F  P  S  S  S  E  D  I  S  S  L  T  P  L  V  D  P  L :   C  T  F  L  Y  D  T  S  R  P  K  L  I  H  E  T  N  L  D  V  L  C  E  L  V  N  I  L  K  V  E  V  L  G  E  Q  L  S  R  R  R  K  S  L  A  G  L  P  P  T  L  D  R  I  L  A  N  V  H  E  R  L  T  F  R  A  R  T  Y  I  R  D  E  :  V  I  M  I  A  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36043" stop="35978"/>
                    <exon start="35896" stop="35795"/>
                    <exon start="35626" stop="35522"/>
                    <exon start="35411" stop="35319"/>
                    <exon start="34781" stop="34693"/>
                    <exon start="30876" stop="30657"/>
                    <exon start="30286" stop="30266"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSRALGMIRTHVLSVLRSTSSQVQAAIRSSGGNKTSFAEGIEPSIIYVRFKAAANELKPILEEIESRTPRKEYIQLLEECHKLYCEQRLSLIRGIVQQRISEFSRKEALSSLTRSGCAYLMQVCQLEHQLFNHFFPSSSEDISSLTPLVDPLCTFLYDTSRPKLIHETNLDVLCELVNILKVEVLGEQLSRRRKSLAGLPPTLDRILANVHERLTFRARTYIRDEVIMIAFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="45898" e_stop="45533"/>
            <exon e_start="40402" e_stop="40319"/>
            <exon e_start="40234" e_stop="40133"/>
            <exon e_start="38526" e_stop="38482"/>
            <exon e_start="38364" e_stop="38290"/>
            <exon e_start="38171" e_stop="38057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.986" e_score="0.997"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.847" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="45898" e_stop="45533" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.986">
            <gDNA_intron_boundary i_start="45532" i_stop="40403" i_length="5130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40402" e_stop="40319" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40318" i_stop="40235" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40234" e_stop="40133" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40132" i_stop="38527" i_length="1606"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38526" e_stop="38482" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.847">
            <gDNA_intron_boundary i_start="38481" i_stop="38365" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38364" e_stop="38290" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.914" acc_prob="0.917">
            <gDNA_intron_boundary i_start="38289" i_stop="38172" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38171" e_stop="38057" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45898" stop="45533"/>
              <exon start="40402" stop="40319"/>
              <exon start="40234" stop="40133"/>
              <exon start="38526" stop="38482"/>
              <exon start="38364" stop="38290"/>
              <exon start="38171" stop="38057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45891" stop="45533"/>
              <exon start="40402" stop="40319"/>
              <exon start="40234" stop="40174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45890" stop="45533"/>
              <exon start="40402" stop="40319"/>
              <exon start="40234" stop="40133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45744" stop="45533"/>
              <exon start="40402" stop="40319"/>
              <exon start="40234" stop="40185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAAAACCCAAAGCTAAGCCAGAGGATCATCCCAGATCTCCAACTTCATCGTTCAAATCACCCTTTTTTTCAACTTCGAAGTCGAAATTGCTTCCATTGAAGCTCCAAAATCCATATGGTGATGGCTACAATCATCTGTAGTATTGATTGTTTTGGTATCAGTAATTGACTAGTTACTACACAGTCCGTTTCCCCCTCATTTTTCATCAATTCTGTTTCGTTTTACTTTTTACACGAACAGAAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAG : AATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTG : GACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAG : TTTTATAAGTGGTTCGCGGATCTTGAAGCAGCCATGAAATTAGAG : TCTGAAGAAAAATATCAGCATTATGCCAGCACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG : GTGGATGAAACACTTGACTTGTTCAATGAGTTGCAATTGCAGCATCAAGCAGTGGCAACAAAGACAAGAACTCTTCATGATGCGTGCGATAGACTGGTGTGTCAACCCATTTCTC</gDNA_template>
            <first_frame> R  K  T  Q  S  *  A  R  G  S  S  Q  I  S  N  F  I  V  Q  I  T  L  F  F  N  F  E  V  E  I  A  S  I  E  A  P  K  S  I  W  *  W  L  Q  S  S  V  V  L  I  V  L  V  S  V  I  D  *  L  L  H  S  P  F  P  P  H  F  S  S  I  L  F  R  F  T  F  Y  T  N  R  N  S  C  K  V  V  E  E  E  S  D  D  N  T  M  A  A  T  T  R  P  G  V  L  K  S  E  A  V  S  K  G  Y  N  F  A  S  T  W  E  Q  :  N  A  L  L  T  E  Q  Q  S  A  A  I  Q  A  L  S  H  A  V  A  E  R  P  F  P  S  N  L  :  D  Q  V  S  G  H  D  N  S  L  S  V  S  T  K  L  S  S  L  E  D  S  G  A  I  E  A  V  L  V  N  T  N  Q  :  F  Y  K  W  F  A  D  L  E  A  A  M  K  L  E  :  S  E  E  K  Y  Q  H  Y  A  S  T  L  T  E  Q  I  Q  T  C  D  S  I  L  H  Q  :  V  D  E  T  L  D  L  F  N  E  L  Q  L  Q  H  Q  A  V  A  T  K  T  R  T  L  H  D  A  C  D  R  L  V  C  Q  P  I  S  </first_frame>
            <second_frame>  G  K  P  K  A  K  P  E  D  H  P  R  S  P  T  S  S  F  K  S  P  F  F  S  T  S  K  S  K  L  L  P  L  K  L  Q  N  P  Y  G  D  G  Y  N  H  L  *  Y  *  L  F  W  Y  Q  *  L  T  S  Y  Y  T  V  R  F  P  L  I  F  H  Q  F  C  F  V  L  L  F  T  R  T  E  T  V  A  K  *  W  K  K  R  V  M  I  I  L  W  R  Q  R  Q  G  R  G  F  S  S  P  K  L  F  P  K  A  I  I  S  L  L  L  G  N  R :   M  L  C  *  Q  S  N  N  Q  Q  P  Y  K  H  F  P  M  Q  L  P  R  D  L  S  R  P  I  W :   T  K  F  L  D  M  I  T  A  S  L  F  Q  Q  S  L  V  L  *  R  I  Q  G  P  L  K  Q  S  *  *  I  Q  I  S :   F  I  S  G  S  R  I  L  K  Q  P  *  N  *  S :   L  K  K  N  I  S  I  M  P  A  P  *  Q  S  R  F  R  P  A  I  V  Y  F  T  R :   W  M  K  H  L  T  C  S  M  S  C  N  C  S  I  K  Q  W  Q  Q  R  Q  E  L  F  M  M  R  A  I  D  W  C  V  N  P  F  L </second_frame>
            <third_frame>   E  N  P  K  L  S  Q  R  I  I  P  D  L  Q  L  H  R  S  N  H  P  F  F  Q  L  R  S  R  N  C  F  H  *  S  S  K  I  H  M  V  M  A  T  I  I  C  S  I  D  C  F  G  I  S  N  *  L  V  T  T  Q  S  V  S  P  S  F  F  I  N  S  V  S  F  Y  F  L  H  E  Q  K  Q  L  Q  S  S  G  R  R  E  *  *  *  Y  Y  G  G  N  D  K  A  G  G  S  Q  V  R  S  C  F  Q  R  L  *  F  R  F  Y  L  G  T   : E  C  S  V  N  R  A  T  I  S  S  H  T  S  T  F  P  C  S  C  R  E  T  F  P  V  Q  F   : G  P  S  F  W  T  *  *  Q  P  L  C  F  N  K  A  *  F  S  R  G  F  R  G  H  *  S  S  P  S  E  Y  K  S   : V  L  *  V  V  R  G  S  *  S  S  H  E  I  R   : V  *  R  K  I  S  A  L  C  Q  H  L  N  R  A  D  S  D  L  R  *  Y  T  S  P   : G  G  *  N  T  *  L  V  Q  *  V  A  I  A  A  S  S  S  G  N  K  D  K  N  S  S  *  C  V  R  *  T  G  V  S  T  H  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45724" stop="45533"/>
                    <exon start="40402" stop="40319"/>
                    <exon start="40234" stop="40133"/>
                    <exon start="38526" stop="38482"/>
                    <exon start="38364" stop="38290"/>
                    <exon start="38171" stop="38058"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLHSPFPPHFSSILFRFTFYTNRNSCKVVEEESDDNTMAATTRPGVLKSEAVSKGYNFASTWEQNALLTEQQSAAIQALSHAVAERPFPSNLDQVSGHDNSLSVSTKLSSLEDSGAIEAVLVNTNQFYKWFADLEAAMKLESEEKYQHYASTLTEQIQTCDSILHQVDETLDLFNELQLQHQAVATKTRTLHDACDRLVCQPIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="45944" e_stop="45780"/>
            <exon e_start="45656" e_stop="45533"/>
            <exon e_start="40402" e_stop="40319"/>
            <exon e_start="40234" e_stop="40133"/>
            <exon e_start="38526" e_stop="38482"/>
            <exon e_start="38364" e_stop="38290"/>
            <exon e_start="38171" e_stop="38076"/>
            <exon e_start="37547" e_stop="37470"/>
            <exon e_start="36606" e_stop="36515"/>
            <exon e_start="36267" e_stop="36206"/>
            <exon e_start="36040" e_stop="35996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.887" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.847" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.917" e_score="0.960"/>
          <exon-intron don_prob="0.832" acc_prob="0.926" e_score="0.927"/>
          <exon-intron don_prob="0.920" acc_prob="0.998" e_score="0.987"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.946"/>
          <exon-intron don_prob="0.995" acc_prob="0.630" e_score="0.952"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45944" e_stop="45780" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.887">
            <gDNA_intron_boundary i_start="45779" i_stop="45657" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45656" e_stop="45533" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.986">
            <gDNA_intron_boundary i_start="45532" i_stop="40403" i_length="5130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40402" e_stop="40319" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40318" i_stop="40235" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40234" e_stop="40133" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40132" i_stop="38527" i_length="1606"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38526" e_stop="38482" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.847">
            <gDNA_intron_boundary i_start="38481" i_stop="38365" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="0.960">
            <gDNA_exon_boundary e_start="38364" e_stop="38290" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.914" acc_prob="0.917">
            <gDNA_intron_boundary i_start="38289" i_stop="38172" i_length="118"/>
          </intron>
          <exon e_serial="7" e_score="0.927">
            <gDNA_exon_boundary e_start="38171" e_stop="38076" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.832" acc_prob="0.926">
            <gDNA_intron_boundary i_start="38075" i_stop="37548" i_length="528"/>
          </intron>
          <exon e_serial="8" e_score="0.987">
            <gDNA_exon_boundary e_start="37547" e_stop="37470" e_length="78"/>
          </exon>
          <intron i_serial="8" don_prob="0.920" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37469" i_stop="36607" i_length="863"/>
          </intron>
          <exon e_serial="9" e_score="0.946">
            <gDNA_exon_boundary e_start="36606" e_stop="36515" e_length="92"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36514" i_stop="36268" i_length="247"/>
          </intron>
          <exon e_serial="10" e_score="0.952">
            <gDNA_exon_boundary e_start="36267" e_stop="36206" e_length="62"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.630">
            <gDNA_intron_boundary i_start="36205" i_stop="36041" i_length="165"/>
          </intron>
          <exon e_serial="11" e_score="0.933">
            <gDNA_exon_boundary e_start="36040" e_stop="35996" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45944" stop="45780"/>
              <exon start="45656" stop="45533"/>
              <exon start="40402" stop="40319"/>
              <exon start="40234" stop="40133"/>
              <exon start="38526" stop="38482"/>
              <exon start="38364" stop="38341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45621" stop="45533"/>
              <exon start="40402" stop="40319"/>
              <exon start="40234" stop="40133"/>
              <exon start="38526" stop="38482"/>
              <exon start="38364" stop="38290"/>
              <exon start="38171" stop="38076"/>
              <exon start="37547" stop="37470"/>
              <exon start="36606" stop="36515"/>
              <exon start="36267" stop="36206"/>
              <exon start="36040" stop="35996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45621" stop="45533"/>
              <exon start="40402" stop="40319"/>
              <exon start="40234" stop="40133"/>
              <exon start="38526" stop="38482"/>
              <exon start="38364" stop="38290"/>
              <exon start="38171" stop="38076"/>
              <exon start="37547" stop="37470"/>
              <exon start="36606" stop="36515"/>
              <exon start="36267" stop="36206"/>
              <exon start="36040" stop="36011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATTTTGAAGAAAAGGAACGTCGTTACTGTAATTTTCATATGAGCGGAAAACCCAAAGCTAAGCCAGAGGATCATCCCAGATCTCCAACTTCATCGTTCAAATCACCCTTTTTTTCAACTTCGAAGTCGAAATTGCTTCCATTGAAGCTCCAAAATCCATATG : AAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAG : AATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTG : GACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAG : TTTTATAAGTGGTTCGCGGATCTTGAAGCAGCCATGAAATTAGAG : TCTGAAGAAAAATATCAGCATTATGCCAGCACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG : GTGGATGAAACACTTGACTTGTTCAATGAGTTGCAATTGCAGCATCAAGCAGTGGCAACAAAGACAAGAACTCTTCATGATGCGTGCGATAGACTG : CTTTTGGAGAAGCAGAAAATAATTGAGTTTGCAGAATCACTTCACAATAAGCTCAATTACTTTGATGAATTGGAGAAT : GTTGCTACCACTTTTTATTCTCCTAGCATGAGCGTTGGTAGTACAAATTTTCTTCCATTGCTAAAGAGACTTGATGAGTGCATATCCTAAGT : AGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG : TCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTT</gDNA_template>
            <first_frame> *  I  L  K  K  R  N  V  V  T  V  I  F  I  *  A  E  N  P  K  L  S  Q  R  I  I  P  D  L  Q  L  H  R  S  N  H  P  F  F  Q  L  R  S  R  N  C  F  H  *  S  S  K  I  H  M  :  K  Q  L  Q  S  S  G  R  R  E  *  *  *  Y  Y  G  G  N  D  K  A  G  G  S  Q  V  R  S  C  F  Q  R  L  *  F  R  F  Y  L  G  T   : E  C  S  V  N  R  A  T  I  S  S  H  T  S  T  F  P  C  S  C  R  E  T  F  P  V  Q  F   : G  P  S  F  W  T  *  *  Q  P  L  C  F  N  K  A  *  F  S  R  G  F  R  G  H  *  S  S  P  S  E  Y  K  S   : V  L  *  V  V  R  G  S  *  S  S  H  E  I  R   : V  *  R  K  I  S  A  L  C  Q  H  L  N  R  A  D  S  D  L  R  *  Y  T  S  P   : G  G  *  N  T  *  L  V  Q  *  V  A  I  A  A  S  S  S  G  N  K  D  K  N  S  S  *  C  V  R  *  T   : A  F  G  E  A  E  N  N  *  V  C  R  I  T  S  Q  *  A  Q  L  L  *  *  I  G  E   : C  C  Y  H  F  L  F  S  *  H  E  R  W  *  Y  K  F  S  S  I  A  K  E  T  *  *  V  H  I  L  S  :  R  V  V  T  H  N  M  Q  S  A  A  F  I  W  S  S  F  D  N  F  S :   L  E  L  W  E  *  F  A  L  T  F  F  P  F   </first_frame>
            <second_frame>  E  F  *  R  K  G  T  S  L  L  *  F  S  Y  E  R  K  T  Q  S  *  A  R  G  S  S  Q  I  S  N  F  I  V  Q  I  T  L  F  F  N  F  E  V  E  I  A  S  I  E  A  P  K  S  I  * :   N  S  C  K  V  V  E  E  E  S  D  D  N  T  M  A  A  T  T  R  P  G  V  L  K  S  E  A  V  S  K  G  Y  N  F  A  S  T  W  E  Q  :  N  A  L  L  T  E  Q  Q  S  A  A  I  Q  A  L  S  H  A  V  A  E  R  P  F  P  S  N  L  :  D  Q  V  S  G  H  D  N  S  L  S  V  S  T  K  L  S  S  L  E  D  S  G  A  I  E  A  V  L  V  N  T  N  Q  :  F  Y  K  W  F  A  D  L  E  A  A  M  K  L  E  :  S  E  E  K  Y  Q  H  Y  A  S  T  L  T  E  Q  I  Q  T  C  D  S  I  L  H  Q  :  V  D  E  T  L  D  L  F  N  E  L  Q  L  Q  H  Q  A  V  A  T  K  T  R  T  L  H  D  A  C  D  R  L  :  L  L  E  K  Q  K  I  I  E  F  A  E  S  L  H  N  K  L  N  Y  F  D  E  L  E  N  :  V  A  T  T  F  Y  S  P  S  M  S  V  G  S  T  N  F  L  P  L  L  K  R  L  D  E  C  I  S  *  V :   E  *  *  P  T  I  C  R  V  Q  H  L  F  G  Q  V  S  T  T  S   : V  S  S  S  G  N  D  S  H  S  R  S  F  R  S  </second_frame>
            <third_frame>   N  F  E  E  K  E  R  R  Y  C  N  F  H  M  S  G  K  P  K  A  K  P  E  D  H  P  R  S  P  T  S  S  F  K  S  P  F  F  S  T  S  K  S  K  L  L  P  L  K  L  Q  N  P  Y   : E  T  V  A  K  *  W  K  K  R  V  M  I  I  L  W  R  Q  R  Q  G  R  G  F  S  S  P  K  L  F  P  K  A  I  I  S  L  L  L  G  N  R :   M  L  C  *  Q  S  N  N  Q  Q  P  Y  K  H  F  P  M  Q  L  P  R  D  L  S  R  P  I  W :   T  K  F  L  D  M  I  T  A  S  L  F  Q  Q  S  L  V  L  *  R  I  Q  G  P  L  K  Q  S  *  *  I  Q  I  S :   F  I  S  G  S  R  I  L  K  Q  P  *  N  *  S :   L  K  K  N  I  S  I  M  P  A  P  *  Q  S  R  F  R  P  A  I  V  Y  F  T  R :   W  M  K  H  L  T  C  S  M  S  C  N  C  S  I  K  Q  W  Q  Q  R  Q  E  L  F  M  M  R  A  I  D  C :   F  W  R  S  R  K  *  L  S  L  Q  N  H  F  T  I  S  S  I  T  L  M  N  W  R  M :   L  L  P  L  F  I  L  L  A  *  A  L  V  V  Q  I  F  F  H  C  *  R  D  L  M  S  A  Y  P  K   : *  S  S  N  P  Q  Y  A  E  C  S  I  Y  L  V  K  F  R  Q  L  Q  :  S  R  A  L  G  M  I  R  T  H  V  L  S  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45655" stop="45533"/>
                    <exon start="40402" stop="40319"/>
                    <exon start="40234" stop="40133"/>
                    <exon start="38526" stop="38482"/>
                    <exon start="38364" stop="38290"/>
                    <exon start="38171" stop="38076"/>
                    <exon start="37547" stop="37470"/>
                    <exon start="36606" stop="36517"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSCKVVEEESDDNTMAATTRPGVLKSEAVSKGYNFASTWEQNALLTEQQSAAIQALSHAVAERPFPSNLDQVSGHDNSLSVSTKLSSLEDSGAIEAVLVNTNQFYKWFADLEAAMKLESEEKYQHYASTLTEQIQTCDSILHQVDETLDLFNELQLQHQAVATKTRTLHDACDRLLLEKQKIIEFAESLHNKLNYFDELENVATTFYSPSMSVGSTNFLPLLKRLDECIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="37157" e_stop="36689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="37157" e_stop="36689" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37157" stop="36689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330789" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAATAAAGCTTTGGTTCTAGATTGTTTTCTTCCTCATGTTACAAATGAGTCACCCAAAGCTATTCTGTCTTGGCTTTTCCAATCTAGTTCTTTTGGATTATTTTGATGTTCTTGCTTAGCGAGTTATTTATTTAAGATGATTTTTTTAATCTCGTCTTTTGGTCAACTCTTCTTTCTCCTATTTATGTGCTTGGTGGTTTCTAAAGGAAAACTTTTTCACTTGTGAGATTGAGAATGAGAGTTCCTGTTTTAATTTTTTTTTTTTGGAACTGAGAGTTCCTTTTTTTAAATTCCTTAAAGAGGAATAGCTTTTCACTCTCTACTGTACATATTCTTGATTTAATCATGACCATTAGACTAAAATTTTCTAATTCCTTTTTGTTTAATTACATCTAATTGGTGTATCAACTTGATTTGTCTTGTGCTAAATTTTCTCTTCAAGTCCTGCTCTTCTCCTACTTGAACTT</gDNA_template>
            <first_frame> V  N  K  A  L  V  L  D  C  F  L  P  H  V  T  N  E  S  P  K  A  I  L  S  W  L  F  Q  S  S  S  F  G  L  F  *  C  S  C  L  A  S  Y  L  F  K  M  I  F  L  I  S  S  F  G  Q  L  F  F  L  L  F  M  C  L  V  V  S  K  G  K  L  F  H  L  *  D  *  E  *  E  F  L  F  *  F  F  F  F  G  T  E  S  S  F  F  *  I  P  *  R  G  I  A  F  H  S  L  L  Y  I  F  L  I  *  S  *  P  L  D  *  N  F  L  I  P  F  C  L  I  T  S  N  W  C  I  N  L  I  C  L  V  L  N  F  L  F  K  S  C  S  S  P  T  *  T  </first_frame>
            <second_frame>  *  I  K  L  W  F  *  I  V  F  F  L  M  L  Q  M  S  H  P  K  L  F  C  L  G  F  S  N  L  V  L  L  D  Y  F  D  V  L  A  *  R  V  I  Y  L  R  *  F  F  *  S  R  L  L  V  N  S  S  F  S  Y  L  C  A  W  W  F  L  K  E  N  F  F  T  C  E  I  E  N  E  S  S  C  F  N  F  F  F  L  E  L  R  V  P  F  F  K  F  L  K  E  E  *  L  F  T  L  Y  C  T  Y  S  *  F  N  H  D  H  *  T  K  I  F  *  F  L  F  V  *  L  H  L  I  G  V  S  T  *  F  V  L  C  *  I  F  S  S  S  P  A  L  L  L  L  E  L </second_frame>
            <third_frame>   K  *  S  F  G  S  R  L  F  S  S  S  C  Y  K  *  V  T  Q  S  Y  S  V  L  A  F  P  I  *  F  F  W  I  I  L  M  F  L  L  S  E  L  F  I  *  D  D  F  F  N  L  V  F  W  S  T  L  L  S  P  I  Y  V  L  G  G  F  *  R  K  T  F  S  L  V  R  L  R  M  R  V  P  V  L  I  F  F  F  W  N  *  E  F  L  F  L  N  S  L  K  R  N  S  F  S  L  S  T  V  H  I  L  D  L  I  M  T  I  R  L  K  F  S  N  S  F  L  F  N  Y  I  *  L  V  Y  Q  L  D  L  S  C  A  K  F  S  L  Q  V  L  L  F  S  Y  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0008H22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="43278" PGL_stop="44052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43278" e_stop="44052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="43278" e_stop="44052" e_length="775"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43278" stop="44052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43278" stop="43842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAAGCACTTTCTCATTCTAGATGGAGGCAGGCTATGGTTGATGAGATGTCTGCTTTACATAAGAGTGATACTTGGGAGCTTGTCTCCCTTCCTGCATGTAAATCTACTGTTGGTTGTCATTGGGTTTATGCAGTCAAAATTGGTCTAGATGGTTAGGTTGATCGACTTAAGGTTCTCCTTGTCGCCAAAGGGTATACTCAGATATTTGGGCTAGATTATAGTGACACTTTTGCTCCTGTGGCTAAAATAGCATATGTTCGTCTTTTTCTAATCTATGGTTGTTGTTCGTCATTGTCCTCTTTATCAGTTGGACATAAAGAATGCTTTTCTGCTAGTGATCTTGAGGAAGAAGTCTATATGGAGCAACCACCTAGTTTTGTTGCTCAGGGGGAGTCTAGTAGCCTTGTATGTCGATTGCGTAGGTCACTCTATGGTCTGAAACAGTCTCCTCGAGCTTGGTTTGGGAAGTTTAGCACAGTAATTCAGAAGTTTGGCATGACTCGTAATGGATCAAATCACTTTGTGTTTTATCGACATTCTGCACCAGGTCGATGTATCTATTTGGTTGTTTATGTTGATGATATTGTTACCACTGATAATGATCAAGACTATATCACCGATATAAAGCAACATCTTTTTAAGCACTTTCAGACAAAAGACCTTGGTAGATTGAAGTATTTTCTAGGTATTGAGGTTGCTCAATCTAGATCAGGCATTGTTATCTCTAAACACAAGTATGCCTTAGACATTCTTGAGGAGACAGGAATGATGGG</gDNA_template>
            <first_frame> V  K  H  F  L  I  L  D  G  G  R  L  W  L  M  R  C  L  L  Y  I  R  V  I  L  G  S  L  S  P  F  L  H  V  N  L  L  L  V  V  I  G  F  M  Q  S  K  L  V  *  M  V  R  L  I  D  L  R  F  S  L  S  P  K  G  I  L  R  Y  L  G  *  I  I  V  T  L  L  L  L  W  L  K  *  H  M  F  V  F  F  *  S  M  V  V  V  R  H  C  P  L  Y  Q  L  D  I  K  N  A  F  L  L  V  I  L  R  K  K  S  I  W  S  N  H  L  V  L  L  L  R  G  S  L  V  A  L  Y  V  D  C  V  G  H  S  M  V  *  N  S  L  L  E  L  G  L  G  S  L  A  Q  *  F  R  S  L  A  *  L  V  M  D  Q  I  T  L  C  F  I  D  I  L  H  Q  V  D  V  S  I  W  L  F  M  L  M  I  L  L  P  L  I  M  I  K  T  I  S  P  I  *  S  N  I  F  L  S  T  F  R  Q  K  T  L  V  D  *  S  I  F  *  V  L  R  L  L  N  L  D  Q  A  L  L  S  L  N  T  S  M  P  *  T  F  L  R  R  Q  E  *  W  </first_frame>
            <second_frame>  *  S  T  F  S  F  *  M  E  A  G  Y  G  *  *  D  V  C  F  T  *  E  *  Y  L  G  A  C  L  P  S  C  M  *  I  Y  C  W  L  S  L  G  L  C  S  Q  N  W  S  R  W  L  G  *  S  T  *  G  S  P  C  R  Q  R  V  Y  S  D  I  W  A  R  L  *  *  H  F  C  S  C  G  *  N  S  I  C  S  S  F  S  N  L  W  L  L  F  V  I  V  L  F  I  S  W  T  *  R  M  L  F  C  *  *  S  *  G  R  S  L  Y  G  A  T  T  *  F  C  C  S  G  G  V  *  *  P  C  M  S  I  A  *  V  T  L  W  S  E  T  V  S  S  S  L  V  W  E  V  *  H  S  N  S  E  V  W  H  D  S  *  W  I  K  S  L  C  V  L  S  T  F  C  T  R  S  M  Y  L  F  G  C  L  C  *  *  Y  C  Y  H  *  *  *  S  R  L  Y  H  R  Y  K  A  T  S  F  *  A  L  S  D  K  R  P  W  *  I  E  V  F  S  R  Y  *  G  C  S  I  *  I  R  H  C  Y  L  *  T  Q  V  C  L  R  H  S  *  G  D  R  N  D  G </second_frame>
            <third_frame>   E  A  L  S  H  S  R  W  R  Q  A  M  V  D  E  M  S  A  L  H  K  S  D  T  W  E  L  V  S  L  P  A  C  K  S  T  V  G  C  H  W  V  Y  A  V  K  I  G  L  D  G  *  V  D  R  L  K  V  L  L  V  A  K  G  Y  T  Q  I  F  G  L  D  Y  S  D  T  F  A  P  V  A  K  I  A  Y  V  R  L  F  L  I  Y  G  C  C  S  S  L  S  S  L  S  V  G  H  K  E  C  F  S  A  S  D  L  E  E  E  V  Y  M  E  Q  P  P  S  F  V  A  Q  G  E  S  S  S  L  V  C  R  L  R  R  S  L  Y  G  L  K  Q  S  P  R  A  W  F  G  K  F  S  T  V  I  Q  K  F  G  M  T  R  N  G  S  N  H  F  V  F  Y  R  H  S  A  P  G  R  C  I  Y  L  V  V  Y  V  D  D  I  V  T  T  D  N  D  Q  D  Y  I  T  D  I  K  Q  H  L  F  K  H  F  Q  T  K  D  L  G  R  L  K  Y  F  L  G  I  E  V  A  Q  S  R  S  G  I  V  I  S  K  H  K  Y  A  L  D  I  L  E  E  T  G  M  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43436" stop="44050"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDRLKVLLVAKGYTQIFGLDYSDTFAPVAKIAYVRLFLIYGCCSSLSSLSVGHKECFSASDLEEEVYMEQPPSFVAQGESSSLVCRLRRSLYGLKQSPRAWFGKFSTVIQKFGMTRNGSNHFVFYRHSAPGRCIYLVVYVDDIVTTDNDQDYITDIKQHLFKHFQTKDLGRLKYFLGIEVAQSRSGIVISKHKYALDILEETGMM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="59270" PGL_stop="55721"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59270" e_stop="59091"/>
            <exon e_start="57811" e_stop="57667"/>
            <exon e_start="57536" e_stop="57426"/>
            <exon e_start="57341" e_stop="57250"/>
            <exon e_start="57158" e_stop="57064"/>
            <exon e_start="56979" e_stop="56866"/>
            <exon e_start="56443" e_stop="56314"/>
            <exon e_start="56162" e_stop="56041"/>
            <exon e_start="55959" e_stop="55721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.021" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.172" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59270" e_stop="59091" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.021">
            <gDNA_intron_boundary i_start="59090" i_stop="57812" i_length="1279"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57811" e_stop="57667" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="57666" i_stop="57537" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57536" e_stop="57426" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="0.172">
            <gDNA_intron_boundary i_start="57425" i_stop="57342" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57341" e_stop="57250" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.954" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57249" i_stop="57159" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57158" e_stop="57064" e_length="95"/>
          </exon>
          <intron i_serial="5" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57063" i_stop="56980" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56979" e_stop="56866" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.981">
            <gDNA_intron_boundary i_start="56865" i_stop="56444" i_length="422"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56443" e_stop="56314" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.941" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56313" i_stop="56163" i_length="151"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="56162" e_stop="56041" e_length="122"/>
          </exon>
          <intron i_serial="8" don_prob="0.948" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56040" i_stop="55960" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="0.996">
            <gDNA_exon_boundary e_start="55959" e_stop="55721" e_length="239"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59270" stop="59091"/>
              <exon start="57811" stop="57667"/>
              <exon start="57536" stop="57426"/>
              <exon start="57341" stop="57250"/>
              <exon start="57158" stop="57064"/>
              <exon start="56979" stop="56866"/>
              <exon start="56443" stop="56314"/>
              <exon start="56162" stop="56041"/>
              <exon start="55959" stop="55721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59249" stop="59091"/>
              <exon start="57811" stop="57667"/>
              <exon start="57536" stop="57426"/>
              <exon start="57341" stop="57250"/>
              <exon start="57158" stop="57064"/>
              <exon start="56979" stop="56915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTTTGGCGGCTCCTCACGCCTTTGAAATATTTCCTTTTGCCTCCATTCTTCCATTCTCAGTGAGCATCAAGAAAATTAGCAATGGAGCAGCAGCACAGGAATCAGAAGTCGATGCAAGACCAAAATGATGAAATCGAGGATGTTCAACACGGCCCTTTTCCAGTTGAACAACTTCAG : GCATCAGGGATTGCAGCTCTAGATGTAAAAAAACTCAAGGATGCTGGTCTATGTACAGTTGAATCTGTTGTTTATGCTCCAAGAAAGGAACTTCTGCAGATAAAAGGAATTAGTGAAGCTAAAGTTGACAAGATTATTGAGGCAG : CTTCAAAATTAGTGCCTTTGGGATTCACTAGTGCCAGCCAACTCCATGCACAGAGGCTTGAAATCATACAGATAACTTCTGGATCGAAAGAACTTGACAAGATATTAGAAG : GAGGAATCGAAACTGGATCTATTACTGAAATTTACGGAGAGTTCCGATGTGGAAAGACTCAGCTGTGTCACACACTATGCGTGACTTGTCAA : CTTCCATTAGATCAGGGAGGTGGTGAAGGGAAAGCAATGTACATTGATGCTGAGGGTACTTTCAGACCACAAAGACTTTTACAAATTGCAGACAG : GTATGGATTGAATGGTCCTGATGTCCTGGAGAATGTAGCCTATGCTCGAGCTTATAATACCGATCATCAATCAAGACTTTTGCTTGAGGCAGCCTCAATGATGGTGGAGACCAG : GTTTGCTCTCATGATTGTGGACAGTGCTACTGCCCTTTATAGAACTGACTTCTCTGGGAGAGGAGAGTTGTCTGCCAGGCAGATGCATCTTGCAAAGTTTCTGAGAAGCCTTCAGAAGTTAGCAGATGAG : TTTGGTGTTGCTGTTGTTATTACGAACCAAGTTGTTGCTCAAGTGGATGGTTCTGCTGTATTTGCTGGGCCTCAAATAAAACCCATTGGTGGCAACATCATGGCACATGCTTCTACGACGAG : ACTAGCTCTGAGGAAGGGTAGGGCCGAGGAGCGGATTTGTAAAGTAGTCAGTTCGCCATGCTTAGCTGAAGCAGAAGCAAGATTTCAAATTTCTGTTGAAGGAGTCACTGATGTAAAGGACTAAATGTGTGATCAGCACATTGTTTACTACTAGTACTATTTTTTGTTTCCTACTTGGTGTACGATTTTGTCATCGTTTTGAAGGTTAGTTAACCATAAAAAGAAGTATGCTATATGAA</gDNA_template>
            <first_frame> Y  F  W  R  L  L  T  P  L  K  Y  F  L  L  P  P  F  F  H  S  Q  *  A  S  R  K  L  A  M  E  Q  Q  H  R  N  Q  K  S  M  Q  D  Q  N  D  E  I  E  D  V  Q  H  G  P  F  P  V  E  Q  L  Q  :  A  S  G  I  A  A  L  D  V  K  K  L  K  D  A  G  L  C  T  V  E  S  V  V  Y  A  P  R  K  E  L  L  Q  I  K  G  I  S  E  A  K  V  D  K  I  I  E  A   : A  S  K  L  V  P  L  G  F  T  S  A  S  Q  L  H  A  Q  R  L  E  I  I  Q  I  T  S  G  S  K  E  L  D  K  I  L  E   : G  G  I  E  T  G  S  I  T  E  I  Y  G  E  F  R  C  G  K  T  Q  L  C  H  T  L  C  V  T  C  Q  :  L  P  L  D  Q  G  G  G  E  G  K  A  M  Y  I  D  A  E  G  T  F  R  P  Q  R  L  L  Q  I  A  D  R :   Y  G  L  N  G  P  D  V  L  E  N  V  A  Y  A  R  A  Y  N  T  D  H  Q  S  R  L  L  L  E  A  A  S  M  M  V  E  T  R :   F  A  L  M  I  V  D  S  A  T  A  L  Y  R  T  D  F  S  G  R  G  E  L  S  A  R  Q  M  H  L  A  K  F  L  R  S  L  Q  K  L  A  D  E  :  F  G  V  A  V  V  I  T  N  Q  V  V  A  Q  V  D  G  S  A  V  F  A  G  P  Q  I  K  P  I  G  G  N  I  M  A  H  A  S  T  T  R :   L  A  L  R  K  G  R  A  E  E  R  I  C  K  V  V  S  S  P  C  L  A  E  A  E  A  R  F  Q  I  S  V  E  G  V  T  D  V  K  D  *  M  C  D  Q  H  I  V  Y  Y  *  Y  Y  F  L  F  P  T  W  C  T  I  L  S  S  F  *  R  L  V  N  H  K  K  K  Y  A  I  *  </first_frame>
            <second_frame>  I  F  G  G  S  S  R  L  *  N  I  S  F  C  L  H  S  S  I  L  S  E  H  Q  E  N  *  Q  W  S  S  S  T  G  I  R  S  R  C  K  T  K  M  M  K  S  R  M  F  N  T  A  L  F  Q  L  N  N  F  R :   H  Q  G  L  Q  L  *  M  *  K  N  S  R  M  L  V  Y  V  Q  L  N  L  L  F  M  L  Q  E  R  N  F  C  R  *  K  E  L  V  K  L  K  L  T  R  L  L  R  Q  :  L  Q  N  *  C  L  W  D  S  L  V  P  A  N  S  M  H  R  G  L  K  S  Y  R  *  L  L  D  R  K  N  L  T  R  Y  *  K  :  E  E  S  K  L  D  L  L  L  K  F  T  E  S  S  D  V  E  R  L  S  C  V  T  H  Y  A  *  L  V  N :   F  H  *  I  R  E  V  V  K  G  K  Q  C  T  L  M  L  R  V  L  S  D  H  K  D  F  Y  K  L  Q  T   : G  M  D  *  M  V  L  M  S  W  R  M  *  P  M  L  E  L  I  I  P  I  I  N  Q  D  F  C  L  R  Q  P  Q  *  W  W  R  P   : G  L  L  S  *  L  W  T  V  L  L  P  F  I  E  L  T  S  L  G  E  E  S  C  L  P  G  R  C  I  L  Q  S  F  *  E  A  F  R  S  *  Q  M  S :   L  V  L  L  L  L  L  R  T  K  L  L  L  K  W  M  V  L  L  Y  L  L  G  L  K  *  N  P  L  V  A  T  S  W  H  M  L  L  R  R   : D  *  L  *  G  R  V  G  P  R  S  G  F  V  K  *  S  V  R  H  A  *  L  K  Q  K  Q  D  F  K  F  L  L  K  E  S  L  M  *  R  T  K  C  V  I  S  T  L  F  T  T  S  T  I  F  C  F  L  L  G  V  R  F  C  H  R  F  E  G  *  L  T  I  K  R  S  M  L  Y  E </second_frame>
            <third_frame>   F  L  A  A  P  H  A  F  E  I  F  P  F  A  S  I  L  P  F  S  V  S  I  K  K  I  S  N  G  A  A  A  Q  E  S  E  V  D  A  R  P  K  *  *  N  R  G  C  S  T  R  P  F  S  S  *  T  T  S   : G  I  R  D  C  S  S  R  C  K  K  T  Q  G  C  W  S  M  Y  S  *  I  C  C  L  C  S  K  K  G  T  S  A  D  K  R  N  *  *  S  *  S  *  Q  D  Y  *  G  S :   F  K  I  S  A  F  G  I  H  *  C  Q  P  T  P  C  T  E  A  *  N  H  T  D  N  F  W  I  E  R  T  *  Q  D  I  R  R :   R  N  R  N  W  I  Y  Y  *  N  L  R  R  V  P  M  W  K  D  S  A  V  S  H  T  M  R  D  L  S   : T  S  I  R  S  G  R  W  *  R  E  S  N  V  H  *  C  *  G  Y  F  Q  T  T  K  T  F  T  N  C  R  Q  :  V  W  I  E  W  S  *  C  P  G  E  C  S  L  C  S  S  L  *  Y  R  S  S  I  K  T  F  A  *  G  S  L  N  D  G  G  D  Q  :  V  C  S  H  D  C  G  Q  C  Y  C  P  L  *  N  *  L  L  W  E  R  R  V  V  C  Q  A  D  A  S  C  K  V  S  E  K  P  S  E  V  S  R  *   : V  W  C  C  C  C  Y  Y  E  P  S  C  C  S  S  G  W  F  C  C  I  C  W  A  S  N  K  T  H  W  W  Q  H  H  G  T  C  F  Y  D  E  :  T  S  S  E  E  G  *  G  R  G  A  D  L  *  S  S  Q  F  A  M  L  S  *  S  R  S  K  I  S  N  F  C  *  R  S  H  *  C  K  G  L  N  V  *  S  A  H  C  L  L  L  V  L  F  F  V  S  Y  L  V  Y  D  F  V  I  V  L  K  V  S  *  P  *  K  E  V  C  Y  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59204" stop="59091"/>
                    <exon start="57811" stop="57667"/>
                    <exon start="57536" stop="57426"/>
                    <exon start="57341" stop="57250"/>
                    <exon start="57158" stop="57064"/>
                    <exon start="56979" stop="56866"/>
                    <exon start="56443" stop="56314"/>
                    <exon start="56162" stop="56041"/>
                    <exon start="55959" stop="55836"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASRKLAMEQQHRNQKSMQDQNDEIEDVQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVVYAPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQITSGSKELDKILEGGIETGSITEIYGEFRCGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGPDVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAVFAGPQIKPIGGNIMAHASTTRLALRKGRAEERICKVVSSPCLAEAEARFQISVEGVTDVKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="69683" PGL_stop="70360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69683" e_stop="70208"/>
            <exon e_start="70298" e_stop="70360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.949"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="69683" e_stop="70208" e_length="526"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="70209" i_stop="70297" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="70298" e_stop="70360" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69683" stop="70208"/>
              <exon start="70298" stop="70360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAATGGCAATGATGGTATTCAATACAAATGTAACAAGATCAATGCAGTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAGTGTTAGAAGTGGTATACAAGCATACTGTGAACTTGGGTCAACAAAAATGTAATTGCAGATCATGGGAATTAAAAGGTATCCCATGTGCACATGGTATAGCAACAATCAACCACTTGAACATAGATGCATCACAAGCAATATCTAGTTGGTATAGAAAAGACACATATATGAAGACATATTCTTATTTCACTCAACCAGTCCCAAACATGGAAATGTGGCTTGAAAGTAGAAACCTAATGGTTGAACCACCTGAGGCAAGATAAATGCCTGGTAGGCCACCAAAGAACAGAAGAAGAGAAATTGGTGAAGTGAGAAAAGTTGGAAAGTTGCCAAGAATGGGGACAGTAATGACATGTTCACTTTGTAAAGGACCAAATCATAACAAGAGAAATTGTCCAAAAAATCCTAAACCTAAGTCTACACCAACACCCACTCAAGAG : TCCACCATTGGAAAAAAGAGGGGTAGAGGTCATTATGAAAGAACAAGCACCAGTAAGACTGGT</gDNA_template>
            <first_frame> S  N  G  N  D  G  I  Q  Y  K  C  N  K  I  N  A  V  Q  H  *  M  E  W  *  C  W  I  *  S  V  R  S  G  I  Q  A  Y  C  E  L  G  S  T  K  M  *  L  Q  I  M  G  I  K  R  Y  P  M  C  T  W  Y  S  N  N  Q  P  L  E  H  R  C  I  T  S  N  I  *  L  V  *  K  R  H  I  Y  E  D  I  F  L  F  H  S  T  S  P  K  H  G  N  V  A  *  K  *  K  P  N  G  *  T  T  *  G  K  I  N  A  W  *  A  T  K  E  Q  K  K  R  N  W  *  S  E  K  S  W  K  V  A  K  N  G  D  S  N  D  M  F  T  L  *  R  T  K  S  *  Q  E  K  L  S  K  K  S  *  T  *  V  Y  T  N  T  H  S  R   : V  H  H  W  K  K  E  G  *  R  S  L  *  K  N  K  H  Q  *  D  W  </first_frame>
            <second_frame>  P  M  A  M  M  V  F  N  T  N  V  T  R  S  M  Q  C  N  I  E  W  N  G  D  V  G  F  E  V  L  E  V  V  Y  K  H  T  V  N  L  G  Q  Q  K  C  N  C  R  S  W  E  L  K  G  I  P  C  A  H  G  I  A  T  I  N  H  L  N  I  D  A  S  Q  A  I  S  S  W  Y  R  K  D  T  Y  M  K  T  Y  S  Y  F  T  Q  P  V  P  N  M  E  M  W  L  E  S  R  N  L  M  V  E  P  P  E  A  R  *  M  P  G  R  P  P  K  N  R  R  R  E  I  G  E  V  R  K  V  G  K  L  P  R  M  G  T  V  M  T  C  S  L  C  K  G  P  N  H  N  K  R  N  C  P  K  N  P  K  P  K  S  T  P  T  P  T  Q  E  :  S  T  I  G  K  K  R  G  R  G  H  Y  E  R  T  S  T  S  K  T  G </second_frame>
            <third_frame>   Q  W  Q  *  W  Y  S  I  Q  M  *  Q  D  Q  C  S  A  T  L  N  G  M  V  M  L  D  L  K  C  *  K  W  Y  T  S  I  L  *  T  W  V  N  K  N  V  I  A  D  H  G  N  *  K  V  S  H  V  H  M  V  *  Q  Q  S  T  T  *  T  *  M  H  H  K  Q  Y  L  V  G  I  E  K  T  H  I  *  R  H  I  L  I  S  L  N  Q  S  Q  T  W  K  C  G  L  K  V  E  T  *  W  L  N  H  L  R  Q  D  K  C  L  V  G  H  Q  R  T  E  E  E  K  L  V  K  *  E  K  L  E  S  C  Q  E  W  G  Q  *  *  H  V  H  F  V  K  D  Q  I  I  T  R  E  I  V  Q  K  I  L  N  L  S  L  H  Q  H  P  L  K  S :   P  P  L  E  K  R  G  V  E  V  I  M  K  E  Q  A  P  V  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69684" stop="70031"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMAMMVFNTNVTRSMQCNIEWNGDVGFEVLEVVYKHTVNLGQQKCNCRSWELKGIPCAHGIATINHLNIDASQAISSWYRKDTYMKTYSYFTQPVPNMEMWLESRNLMVEPPEAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70032" stop="70208"/>
                    <exon start="70298" stop="70360"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MPGRPPKNRRREIGEVRKVGKLPRMGTVMTCSLCKGPNHNKRNCPKNPKPKSTPTPTQESTIGKKRGRGHYERTSTSKTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="92894" PGL_stop="105647"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92894" e_stop="93078"/>
            <exon e_start="93178" e_stop="93509"/>
            <exon e_start="96219" e_stop="96342"/>
            <exon e_start="96428" e_stop="96586"/>
            <exon e_start="97716" e_stop="99218"/>
            <exon e_start="104211" e_stop="104477"/>
            <exon e_start="104893" e_stop="105647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.569" acc_prob="0.915" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.672" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.996"/>
          <exon-intron don_prob="0.970" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92894" e_stop="93078" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.913">
            <gDNA_intron_boundary i_start="93079" i_stop="93177" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="93178" e_stop="93509" e_length="332"/>
          </exon>
          <intron i_serial="2" don_prob="0.569" acc_prob="0.915">
            <gDNA_intron_boundary i_start="93510" i_stop="96218" i_length="2709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96219" e_stop="96342" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.672">
            <gDNA_intron_boundary i_start="96343" i_stop="96427" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96428" e_stop="96586" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.758" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96587" i_stop="97715" i_length="1129"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="97716" e_stop="99218" e_length="1503"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99219" i_stop="104210" i_length="4992"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="104211" e_stop="104477" e_length="267"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.981">
            <gDNA_intron_boundary i_start="104478" i_stop="104892" i_length="415"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="104893" e_stop="105647" e_length="755"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92894" stop="93078"/>
              <exon start="93178" stop="93509"/>
              <exon start="96219" stop="96291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92894" stop="93078"/>
              <exon start="93178" stop="93446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93338" stop="93509"/>
              <exon start="96219" stop="96342"/>
              <exon start="96428" stop="96586"/>
              <exon start="97716" stop="98074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93408" stop="93509"/>
              <exon start="96219" stop="96342"/>
              <exon start="96428" stop="96586"/>
              <exon start="97716" stop="98164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93422" stop="93509"/>
              <exon start="96219" stop="96342"/>
              <exon start="96428" stop="96586"/>
              <exon start="97716" stop="98083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96436" stop="96586"/>
              <exon start="97716" stop="98097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97730" stop="98418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97892" stop="98680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97896" stop="98153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97985" stop="98645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97985" stop="98511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98265" stop="98944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98326" stop="98704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98338" stop="99030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98411" stop="99194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98411" stop="99193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98435" stop="99218"/>
              <exon start="104211" stop="104255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98580" stop="99118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98609" stop="99218"/>
              <exon start="104211" stop="104293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98706" stop="99169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98769" stop="99218"/>
              <exon start="104211" stop="104477"/>
              <exon start="104893" stop="104935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98864" stop="99218"/>
              <exon start="104211" stop="104477"/>
              <exon start="104893" stop="105155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98992" stop="99218"/>
              <exon start="104211" stop="104477"/>
              <exon start="104893" stop="105121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98992" stop="99218"/>
              <exon start="104211" stop="104454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99186" stop="99218"/>
              <exon start="104211" stop="104477"/>
              <exon start="104893" stop="105450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104229" stop="104477"/>
              <exon start="104893" stop="105234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104230" stop="104477"/>
              <exon start="104893" stop="105275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104245" stop="104477"/>
              <exon start="104893" stop="105593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104393" stop="104477"/>
              <exon start="104893" stop="105396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369111" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105210" stop="105647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218230" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105211" stop="105633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218013" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105253" stop="105647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218089" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105411" stop="105647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217874" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGGTCACTACAGCAAGATTATCCTTCCTCACCTTCCGACCAACTGATTATTGTAGTATGCCTTTCAACACGCTGTGTTTGGAAAGGAACTGTTTGTGAGCCACCTCATATTTCTCGAATAAAATTTTATGGGATTACCGATATGCCTTTGGGACGGTTTTTACGAGACCGGTTGTTTGATGAG : AATTTTAGGTGTCCCTCATGTGAAATGCCTCCAGAAGCACATGTTCGTTGCTATACTCATCGGCAAGGCAGCCTCACAATTTCTGTAAAGAAGCTACCTGAATGTATCTTGCCAGGAGAACAGGAAGGAAAGATATGGATGTGGCACAGATGTCTGCGATGTCCTCGGGACAATGGTTTCCCTCCTCCAACCAGGAGGGTAGTAATGTCTAATGCTGCTTGGGGGTTGTCATTTGGGAAATTTTTGGAACTCAGTTTTTCAAATCATGCAGCAGCGAGCAGGGTTGCAAGTTGTGGTCATCTTCTTCACCGGGACTGTCTCCGGTTCTATGG : GTTTGGGAAAATGGTAGCTTGTTTTCGATATGCTCCTGTTCATGTTTATTCTGTCTTTCTCCCACCTCCAAAACTCGAATTTAGCTATGATAATCAGGAGTGGATTCAGAAAGAAGGTGATGAG : GTGCGCAGAAGGGCTAATGCGTTGTTTGCTGAGGTGTCCAAAGTTCTTCATGTCAAGTTGGAAAAATTCTCTGTTGATAGCAGCTTGAAAGCACCCAAGACAAGTGAGCAGATCACAGAGATGGAAGAAATATTAGAGAAGGAGAAAACTGAGTTTGAG : GGATTATTACGCAAGGCACTTAGCAGGGAGATCAAAGTTGGTCAGCCTACAGTTGACATCCTTGAGATAAATCAACTGAGAAGGCAGTTGGTTTTTCATGCTTATCTATGGGACAGACGTTTGATACATCTTTCCAGTTCTCATGGTAAAAATTCCCGAACTCCGGGCAGTTTGACACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACTGCGAGATTTTCTGTGCTATAAGAAATACAGGAGATGGTAATGTACTGGAACCTGGAAAAAATGTCAGACGTGTTCTTTCAGATGCAAAGTTCCCGTCTGTGGGAAGTTTATCCGACACTCTTGATGCTGCATGGACCGGTGAAAGCCACCTGGCTATTAAAGAGCATAACAGTGCATTTCCAGGTTCGTTCGTTGTAGATTCTACTGCTTTGACTGGAGTTTCAGCAAATACAGATGTCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAAGTTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAG : GTTACATCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCG : TCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGATGAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTGCCCCGGCCGGTCTTGGTATAATTTTATCCATCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTTATCCCACATTCTGATGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATGAGAATTGAGACTCTTTTGACAAGGGCTGCCGTGGTAGCAGTAAAGATCAATGTAATTTGATCTTGTAAGTCCTACAATCGGATGGTTTCAAATAAGCTGCACTCGCGACATTTTGATTTTCAGGCACCTATGCAATGAGTTGTACTTGTCGCGATTCTTCGCCTCCTTCCTATTTTGCACACGGTATAGGTTGATCA</gDNA_template>
            <first_frame> *  G  H  Y  S  K  I  I  L  P  H  L  P  T  N  *  L  L  *  Y  A  F  Q  H  A  V  F  G  K  E  L  F  V  S  H  L  I  F  L  E  *  N  F  M  G  L  P  I  C  L  W  D  G  F  Y  E  T  G  C  L  M  R :   I  L  G  V  P  H  V  K  C  L  Q  K  H  M  F  V  A  I  L  I  G  K  A  A  S  Q  F  L  *  R  S  Y  L  N  V  S  C  Q  E  N  R  K  E  R  Y  G  C  G  T  D  V  C  D  V  L  G  T  M  V  S  L  L  Q  P  G  G  *  *  C  L  M  L  L  G  G  C  H  L  G  N  F  W  N  S  V  F  Q  I  M  Q  Q  R  A  G  L  Q  V  V  V  I  F  F  T  G  T  V  S  G  S  M   : G  L  G  K  W  *  L  V  F  D  M  L  L  F  M  F  I  L  S  F  S  H  L  Q  N  S  N  L  A  M  I  I  R  S  G  F  R  K  K  V  M  R :   C  A  E  G  L  M  R  C  L  L  R  C  P  K  F  F  M  S  S  W  K  N  S  L  L  I  A  A  *  K  H  P  R  Q  V  S  R  S  Q  R  W  K  K  Y  *  R  R  R  K  L  S  L  R :   D  Y  Y  A  R  H  L  A  G  R  S  K  L  V  S  L  Q  L  T  S  L  R  *  I  N  *  E  G  S  W  F  F  M  L  I  Y  G  T  D  V  *  Y  I  F  P  V  L  M  V  K  I  P  E  L  R  A  V  *  H  N  *  R  R  N  P  S  A  L  V  R  N  F  L  K  G  L  Q  F  *  D  L  E  K  V  W  G  A  M  I  Q  L  F  R  M  *  R  L  K  *  H  L  V  K  E  D  M  V  R  F  L  M  G  F  T  K  D  *  L  L  M  R  T  *  L  T  G  K  T  A  R  F  S  V  L  *  E  I  Q  E  M  V  M  Y  W  N  L  E  K  M  S  D  V  F  F  Q  M  Q  S  S  R  L  W  E  V  Y  P  T  L  L  M  L  H  G  P  V  K  A  T  W  L  L  K  S  I  T  V  H  F  Q  V  R  S  L  *  I  L  L  L  *  L  E  F  Q  Q  I  Q  M  S  K  G  L  C  V  T  K  M  G  L  K  Y  L  I  Y  L  L  S  L  T  T  Q  I  T  *  P  G  Q  R  H  I  S  Q  I  S  I  V  R  S  T  R  I  S  Q  Q  I  H  N  M  L  L  N  *  M  S  I  I  L  F  I  S  C  R  L  A  N  C  Y  I  K  V  V  P  G  F  L  Q  L  L  V  K  M  T  L  L  F  Q  F  M  M  M  S  R  Q  V  S  S  H  M  H  L  S  H  Q  I  T  A  I  K  C  Q  M  N  L  K  T  *  K  K  I  T  S  F  Q  L  L  C  H  F  W  I  H  *  I  Y  F  R  F  T  L  W  M  E  *  F  R  N  L  Q  E  V  L  D  L  P  T  K  A  C  H  R  V  I  V  L  A  A  Q  T  W  I  H  Q  H  I  L  M  L  C  M  P  E  Y  L  S  Q  M  M  A  L  L  E  R  L  S  T  Q  S  P  A  I  M  R  S  N  S  R  P  *  E  S  L  V  A  P  M  N  Q  T  L  Y  V  P  L  A  D  A  K  N  G  V  L  R  V  G  R  A  M  F  S  L  P  K  P  W  T  T  D  L  S  S  S  R  *  R  R  Q  S  W  S  H  L  S  S  L  H  Q  L  T  L  S  I  Y  L  T  Q  *  L  V  G  A  Q  L  A  W  Q  R  F  W  G  S  T  R :   L  H  Q  S  I  S  K  V  G  K  N  Q  E  W  M  C  L  L  W  K  I  F  F  L  S  A  T  S  L  D  C  M  T  S  K  G  R  L  D  H  A  I  I  Q  I  Q  V  E  V  T  K  F  Y  L  I  R  T  *  L  K  Q  C  Q  L  L  R  F  L  W  E  R  K  L  S  G  C  C  R  E  L  C  G  M  I  L  H  F  *  R :   Q  *  M  *  W  I  T  H  Y  *  L  G  W  M  R  R  S  R  N  W  C  L  V  L  L  I  S  *  D  S  I  R  G  T  S  I  S  R  L  G  *  R  L  Q  V  F  *  V  G  R  R  M  Q  P  Q  R  *  F  L  Q  S  N  T  K  *  D  S  G  K  Q  C  L  H  T  F  *  W  C  Q  M  S  G  L  H  E  V  I  P  Q  V  S  V  Q  K  N  C  P  G  R  S  W  Y  N  F  I  H  P  F  L  C  H  Q  V  L  C  I  L  C  R  N  V  G  *  L  L  Y  H  *  R  I  T  F  V  F  P  K  *  *  Y  Y  R  V  I  S  I  Q  R  I  C  *  F  L  G  V  P  P  V  V  Q  S  I  V  G  L  R  F  F  L  S  H  I  L  M  L  N  G  S  S  W  Y  I  H  V  F  T  *  E  L  R  L  F  *  Q  G  L  P  W  *  Q  *  R  S  M  *  F  D  L  V  S  P  T  I  G  W  F  Q  I  S  C  T  R  D  I  L  I  F  R  H  L  C  N  E  L  Y  L  S  R  F  F  A  S  F  L  F  C  T  R  Y  R  L  I  </first_frame>
            <second_frame>  R  V  T  T  A  R  L  S  F  L  T  F  R  P  T  D  Y  C  S  M  P  F  N  T  L  C  L  E  R  N  C  L  *  A  T  S  Y  F  S  N  K  I  L  W  D  Y  R  Y  A  F  G  T  V  F  T  R  P  V  V  *  *   : E  F  *  V  S  L  M  *  N  A  S  R  S  T  C  S  L  L  Y  S  S  A  R  Q  P  H  N  F  C  K  E  A  T  *  M  Y  L  A  R  R  T  G  R  K  D  M  D  V  A  Q  M  S  A  M  S  S  G  Q  W  F  P  S  S  N  Q  E  G  S  N  V  *  C  C  L  G  V  V  I  W  E  I  F  G  T  Q  F  F  K  S  C  S  S  E  Q  G  C  K  L  W  S  S  S  S  P  G  L  S  P  V  L  W  :  V  W  E  N  G  S  L  F  S  I  C  S  C  S  C  L  F  C  L  S  P  T  S  K  T  R  I  *  L  *  *  S  G  V  D  S  E  R  R  *  *   : G  A  Q  K  G  *  C  V  V  C  *  G  V  Q  S  S  S  C  Q  V  G  K  I  L  C  *  *  Q  L  E  S  T  Q  D  K  *  A  D  H  R  D  G  R  N  I  R  E  G  E  N  *  V  *   : G  I  I  T  Q  G  T  *  Q  G  D  Q  S  W  S  A  Y  S  *  H  P  *  D  K  S  T  E  K  A  V  G  F  S  C  L  S  M  G  Q  T  F  D  T  S  F  Q  F  S  W  *  K  F  P  N  S  G  Q  F  D  T  T  E  G  E  T  P  Q  L  *  *  G  T  S  *  K  D  C  N  F  E  T  W  K  K  F  G  E  L  *  F  S  S  S  E  C  E  D  *  N  N  I  *  *  R  K  T  W  S  D  S  *  W  G  S  R  K  I  D  Y  *  *  E  P  N  S  R  E  R  L  R  D  F  L  C  Y  K  K  Y  R  R  W  *  C  T  G  T  W  K  K  C  Q  T  C  S  F  R  C  K  V  P  V  C  G  K  F  I  R  H  S  *  C  C  M  D  R  *  K  P  P  G  Y  *  R  A  *  Q  C  I  S  R  F  V  R  C  R  F  Y  C  F  D  W  S  F  S  K  Y  R  C  R  K  V  S  V  *  Q  K  W  G  *  N  T  S  F  I  C  *  V  *  Q  H  R  L  P  D  L  G  N  G  T  F  L  K  F  L  S  F  V  Q  Q  E  Y  H  S  K  S  T  I  C  C  *  I  E  *  A  *  S  C  L  Y  L  V  V  *  R  I  A  T  S  R  W  C  Q  A  S  Y  S  C  W  *  K  *  H  C  Y  S  S  L  *  *  *  A  D  K  Y  H  L  I  C  T  C  L  T  R  L  P  Q  S  N  V  R  *  I  S  K  P  E  R  K  S  Q  V  F  S  F  F  V  I  S  G  F  I  K  S  T  S  A  S  L  C  G  W  S  S  F  G  I  S  K  K  F  W  I  Y  Q  R  K  H  V  I  G  L  *  F  S  Q  L  K  H  G  S  T  S  I  Y  *  C  F  A  C  P  N  I  F  L  R  *  W  P  S  W  K  G  *  V  H  S  H  L  L  L  C  E  A  I  R  D  L  E  K  V  L  L  P  Q  *  I  R  L  Y  T  F  P  *  P  M  Q  K  M  G  C  S  G  W  E  E  Q  C  F  L  C  Q  N  L  G  R  P  I  Y  H  Q  A  G  N  E  D  R  V  G  V  I  Y  Q  V  C  T  S  L  L  *  V  F  I  *  L  N  S  *  W  E  P  N  L  L  G  K  D  S  G  D  L  P   : G  Y  I  K  A  S  Q  R  W  E  R  I  K  N  G  C  A  C  Y  G  K  S  S  F  *  A  Q  H  H  *  T  V  *  P  Q  R  V  V  S  I  T  L  *  S  R  F  K  W  K  *  Q  S  F  T  *  S  E  L  D  *  S  N  A  N  F  S  D  F  C  G  N  A  S  *  A  A  A  A  E  S  C  V  E  *  Y  F  I  S  S   : V  N  R  C  D  G  L  L  I  T  S  W  G  G  *  E  E  A  G  T  G  A  W  Y  Y  *  F  H  E  T  V  Y  V  G  Q  A  S  R  D  L  G  K  G  F  R  Y  S  R  W  A  E  E  C  S  P  N  G  D  F  S  K  A  I  Q  N  K  I  Q  E  S  N  V  Y  I  L  S  D  G  A  R  *  V  A  Y  M  K  *  Y  P  K  Y  Q  C  R  K  I  A  P  A  G  L  G  I  I  L  S  I  L  S  Y  A  I  K  F  C  V  F  C  A  G  M  L  G  S  C  F  I  I  R  G  L  L  L  F  F  Q  S  S  S  I  T  E  L  F  P  Y  K  E  F  V  S  F  W  A  F  R  Q  L  Y  S  Q  *  S  V  F  V  S  F  Y  P  T  F  *  C  S  M  E  A  L  G  I  F  M  C  L  H  E  N  *  D  S  F  D  K  G  C  R  G  S  S  K  D  Q  C  N  L  I  L  *  V  L  Q  S  D  G  F  K  *  A  A  L  A  T  F  *  F  S  G  T  Y  A  M  S  C  T  C  R  D  S  S  P  P  S  Y  F  A  H  G  I  G  *  S </second_frame>
            <third_frame>   G  S  L  Q  Q  D  Y  P  S  S  P  S  D  Q  L  I  I  V  V  C  L  S  T  R  C  V  W  K  G  T  V  C  E  P  P  H  I  S  R  I  K  F  Y  G  I  T  D  M  P  L  G  R  F  L  R  D  R  L  F  D  E  :  N  F  R  C  P  S  C  E  M  P  P  E  A  H  V  R  C  Y  T  H  R  Q  G  S  L  T  I  S  V  K  K  L  P  E  C  I  L  P  G  E  Q  E  G  K  I  W  M  W  H  R  C  L  R  C  P  R  D  N  G  F  P  P  P  T  R  R  V  V  M  S  N  A  A  W  G  L  S  F  G  K  F  L  E  L  S  F  S  N  H  A  A  A  S  R  V  A  S  C  G  H  L  L  H  R  D  C  L  R  F  Y  G :   F  G  K  M  V  A  C  F  R  Y  A  P  V  H  V  Y  S  V  F  L  P  P  P  K  L  E  F  S  Y  D  N  Q  E  W  I  Q  K  E  G  D  E  :  V  R  R  R  A  N  A  L  F  A  E  V  S  K  V  L  H  V  K  L  E  K  F  S  V  D  S  S  L  K  A  P  K  T  S  E  Q  I  T  E  M  E  E  I  L  E  K  E  K  T  E  F  E  :  G  L  L  R  K  A  L  S  R  E  I  K  V  G  Q  P  T  V  D  I  L  E  I  N  Q  L  R  R  Q  L  V  F  H  A  Y  L  W  D  R  R  L  I  H  L  S  S  S  H  G  K  N  S  R  T  P  G  S  L  T  Q  L  K  E  K  P  L  S  S  S  E  E  L  P  E  R  T  A  I  L  R  P  G  K  S  L  G  S  Y  D  S  A  L  Q  N  V  K  T  E  I  T  S  S  E  G  R  H  G  Q  I  P  D  G  V  H  E  R  L  T  T  D  E  N  L  T  H  G  K  D  C  E  I  F  C  A  I  R  N  T  G  D  G  N  V  L  E  P  G  K  N  V  R  R  V  L  S  D  A  K  F  P  S  V  G  S  L  S  D  T  L  D  A  A  W  T  G  E  S  H  L  A  I  K  E  H  N  S  A  F  P  G  S  F  V  V  D  S  T  A  L  T  G  V  S  A  N  T  D  V  E  R  S  L  C  D  K  N  G  A  E  I  P  H  L  S  A  K  S  D  N  T  D  Y  L  T  W  A  T  A  H  F  S  N  F  Y  R  S  F  N  K  N  I  T  A  N  P  Q  Y  V  A  K  L  N  E  H  N  P  V  Y  I  L  S  F  S  E  L  L  H  Q  G  G  A  R  L  L  T  A  V  G  E  N  D  I  V  I  P  V  Y  D  D  E  P  T  S  I  I  S  Y  A  L  V  S  P  D  Y  R  N  Q  M  S  D  E  S  Q  N  L  K  E  N  H  K  F  S  A  S  L  S  F  L  D  S  L  N  L  L  P  L  H  S  V  D  G  V  V  S  E  S  P  R  S  F  G  S  T  N  E  S  M  S  S  G  Y  S  S  R  S  S  N  M  D  P  P  A  Y  I  N  A  L  H  A  R  I  S  F  S  D  D  G  P  P  G  K  V  K  Y  T  V  T  C  Y  Y  A  K  Q  F  E  T  L  R  K  S  C  C  P  N  E  S  D  F  I  R  S  L  S  R  C  K  K  W  G  A  Q  G  G  K  S  N  V  F  F  A  K  T  L  D  D  R  F  I  I  K  Q  V  T  K  T  E  L  E  S  F  I  K  F  A  P  A  Y  F  K  Y  L  S  D  S  I  A  S  G  S  P  T  C  L  A  K  I  L  G  I  Y  Q  :  V  T  S  K  H  L  K  G  G  K  E  S  R  M  D  V  L  V  M  E  N  L  L  F  K  R  N  I  T  R  L  Y  D  L  K  G  S  S  R  S  R  Y  N  P  D  S  S  G  S  N  K  V  L  L  D  Q  N  L  I  E  A  M  P  T  S  P  I  F  V  G  T  Q  A  K  R  L  L  Q  R  A  V  W  N  D  T  S  F  L  A  :  S  I  D  V  M  D  Y  S  L  L  V  G  V  D  E  K  K  Q  E  L  V  L  G  I  I  D  F  M  R  Q  Y  T  W  D  K  H  L  E  T  W  V  K  A  S  G  I  L  G  G  P  K  N  A  A  P  T  V  I  S  P  K  Q  Y  K  I  R  F  R  K  A  M  S  T  Y  F  L  M  V  P  D  E  W  P  T  *  S  D  T  P  S  I  S  A  E  K  L  P  R  P  V  L  V  *  F  Y  P  S  F  L  M  P  S  S  F  V  Y  F  V  Q  E  C  W  V  V  A  L  S  L  E  D  Y  F  C  F  S  K  V  V  V  L  Q  S  Y  F  H  T  K  N  L  L  V  S  G  R  S  A  S  C  T  V  N  S  R  S  S  F  L  F  I  P  H  S  D  A  Q  W  K  L  L  V  Y  S  C  V  Y  M  R  I  E  T  L  L  T  R  A  A  V  V  A  V  K  I  N  V  I  *  S  C  K  S  Y  N  R  M  V  S  N  K  L  H  S  R  H  F  D  F  Q  A  P  M  Q  *  V  V  L  V  A  I  L  R  L  L  P  I  L  H  T  V  *  V  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92896" stop="93078"/>
                    <exon start="93178" stop="93509"/>
                    <exon start="96219" stop="96342"/>
                    <exon start="96428" stop="96586"/>
                    <exon start="97716" stop="99218"/>
                    <exon start="104211" stop="104477"/>
                    <exon start="104893" stop="105147"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2820</number_coding_nucleotides>
                  <number_encoded_amino_acids>940</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLQQDYPSSPSDQLIIVVCLSTRCVWKGTVCEPPHISRIKFYGITDMPLGRFLRDRLFDENFRCPSCEMPPEAHVRCYTHRQGSLTISVKKLPECILPGEQEGKIWMWHRCLRCPRDNGFPPPTRRVVMSNAAWGLSFGKFLELSFSNHAAASRVASCGHLLHRDCLRFYGFGKMVACFRYAPVHVYSVFLPPPKLEFSYDNQEWIQKEGDEVRRRANALFAEVSKVLHVKLEKFSVDSSLKAPKTSEQITEMEEILEKEKTEFEGLLRKALSREIKVGQPTVDILEINQLRRQLVFHAYLWDRRLIHLSSSHGKNSRTPGSLTQLKEKPLSSSEELPERTAILRPGKSLGSYDSALQNVKTEITSSEGRHGQIPDGVHERLTTDENLTHGKDCEIFCAIRNTGDGNVLEPGKNVRRVLSDAKFPSVGSLSDTLDAAWTGESHLAIKEHNSAFPGSFVVDSTALTGVSANTDVERSLCDKNGAEIPHLSAKSDNTDYLTWATAHFSNFYRSFNKNITANPQYVAKLNEHNPVYILSFSELLHQGGARLLTAVGENDIVIPVYDDEPTSIISYALVSPDYRNQMSDESQNLKENHKFSASLSFLDSLNLLPLHSVDGVVSESPRSFGSTNESMSSGYSSRSSNMDPPAYINALHARISFSDDGPPGKVKYTVTCYYAKQFETLRKSCCPNESDFIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFAPAYFKYLSDSIASGSPTCLAKILGIYQVTSKHLKGGKESRMDVLVMENLLFKRNITRLYDLKGSSRSRYNPDSSGSNKVLLDQNLIEAMPTSPIFVGTQAKRLLQRAVWNDTSFLASIDVMDYSLLVGVDEKKQELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNAAPTVISPKQYKIRFRKAMSTYFLMVPDEWPT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105202" stop="105510"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYPSFLMPSSFVYFVQECWVVALSLEDYFCFSKVVVLQSYFHTKNLLVSGRSASCTVNSRSSFLFIPHSDAQWKLLVYSCVYMRIETLLTRAAVVAVKINVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103401" e_stop="103677"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103401" e_stop="103677" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103401" stop="103677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</gDNA_template>
            <first_frame> F  Y  *  R  S  P  T  I  *  *  S  V  A  C  S  L  F  I  *  E  L  A  S  *  H  F  H  Q  V  I  A  K  G  K  V  *  R  S  E  A  K  N  *  C  L  P  Q  K  C  Q  G  G  V  L  D  N  *  H  F  F  S  L  L  L  F  L  L  F  F  T  Y  F  N  L  V  L  P  I  F  *  *  T  *  S  T  L  V  A  Q  L  S  E  </first_frame>
            <second_frame>  F  I  R  E  V  Q  Q  F  N  E  V  L  L  V  H  C  S  S  E  N  *  L  A  D  I  F  T  K  S  L  P  K  E  R  F  E  D  P  R  Q  R  I  S  V  C  H  K  N  A  K  E  E  C  *  T  I  D  I  F  S  A  Y  Y  Y  F  Y  Y  F  L  L  I  S  I  *  C  F  L  F  S  S  R  L  S  Q  L  *  L  L  N  F  L  K </second_frame>
            <third_frame>   L  L  E  K  S  N  N  L  M  K  C  C  L  F  I  V  H  L  R  T  S  *  L  T  F  S  P  S  H  C  Q  R  K  G  L  K  I  R  G  K  E  L  V  F  A  T  K  M  P  R  R  S  V  R  Q  L  T  F  F  Q  L  I  I  I  F  T  I  F  Y  L  F  Q  F  S  A  S  Y  F  L  V  D  L  V  N  F  S  C  S  T  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103469" stop="103675"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTFSPSHCQRKGLKIRGKELVFATKMPRRSVRQLTFFQLIIIFTIFYLFQFSASYFLVDLVNFSCSTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="105552" PGL_stop="105006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105552" e_stop="105006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="105552" e_stop="105006" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105552" stop="105006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244298" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCAGCTTATTTGAAACCATCCGATTGTAGGACTTACAAGATCAAATTACATTGATCTTTACTGCTACCACGGCAGCCCTTGTCAAAAGAGTCTCAATTCTCATGTAAACACATGAATATACCAAGAGCTTCCATTGAGCATCAGAATGTGGGATAAAAAGAAACGAAGACCGACTATTGACTGTACAACTGGCGGAACGCCCAGAAACTAACAAATTCTTTGTATGGAAATAACTCTGTAATACTACTACTTTGGAAAAACAAAAGTAATCCTCTAATGATAAAGCAACTACCCAACATTCCTGCACAAAATACACAAAACTTGATGGCATAAGAAAGGATGGATAAAATTATACCAAGACCGGCCGGGGCAATTTTTCTGCACTGATACTTGGGGTATCACTTCATGTAGGCCACTCATCTGGCACCATCAGAAAGTATGTAGACATTGCTTTCCTGAATCTTATTTTGTATTGCTTTGGAGAAATCACCGTTGGGGCTGCATTCTTCGGCCCACCTAGAATACCTGAAGCCTTTACCCAAGTC</gDNA_template>
            <first_frame> V  Q  L  I  *  N  H  P  I  V  G  L  T  R  S  N  Y  I  D  L  Y  C  Y  H  G  S  P  C  Q  K  S  L  N  S  H  V  N  T  *  I  Y  Q  E  L  P  L  S  I  R  M  W  D  K  K  K  R  R  P  T  I  D  C  T  T  G  G  T  P  R  N  *  Q  I  L  C  M  E  I  T  L  *  Y  Y  Y  F  G  K  T  K  V  I  L  *  *  *  S  N  Y  P  T  F  L  H  K  I  H  K  T  *  W  H  K  K  G  W  I  K  L  Y  Q  D  R  P  G  Q  F  F  C  T  D  T  W  G  I  T  S  C  R  P  L  I  W  H  H  Q  K  V  C  R  H  C  F  P  E  S  Y  F  V  L  L  W  R  N  H  R  W  G  C  I  L  R  P  T  *  N  T  *  S  L  Y  P  S  </first_frame>
            <second_frame>  C  S  L  F  E  T  I  R  L  *  D  L  Q  D  Q  I  T  L  I  F  T  A  T  T  A  A  L  V  K  R  V  S  I  L  M  *  T  H  E  Y  T  K  S  F  H  *  A  S  E  C  G  I  K  R  N  E  D  R  L  L  T  V  Q  L  A  E  R  P  E  T  N  K  F  F  V  W  K  *  L  C  N  T  T  T  L  E  K  Q  K  *  S  S  N  D  K  A  T  T  Q  H  S  C  T  K  Y  T  K  L  D  G  I  R  K  D  G  *  N  Y  T  K  T  G  R  G  N  F  S  A  L  I  L  G  V  S  L  H  V  G  H  S  S  G  T  I  R  K  Y  V  D  I  A  F  L  N  L  I  L  Y  C  F  G  E  I  T  V  G  A  A  F  F  G  P  P  R  I  P  E  A  F  T  Q  V </second_frame>
            <third_frame>   A  A  Y  L  K  P  S  D  C  R  T  Y  K  I  K  L  H  *  S  L  L  L  P  R  Q  P  L  S  K  E  S  Q  F  S  C  K  H  M  N  I  P  R  A  S  I  E  H  Q  N  V  G  *  K  E  T  K  T  D  Y  *  L  Y  N  W  R  N  A  Q  K  L  T  N  S  L  Y  G  N  N  S  V  I  L  L  L  W  K  N  K  S  N  P  L  M  I  K  Q  L  P  N  I  P  A  Q  N  T  Q  N  L  M  A  *  E  R  M  D  K  I  I  P  R  P  A  G  A  I  F  L  H  *  Y  L  G  Y  H  F  M  *  A  T  H  L  A  P  S  E  S  M  *  T  L  L  S  *  I  L  F  C  I  A  L  E  K  S  P  L  G  L  H  S  S  A  H  L  E  Y  L  K  P  L  P  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105203" stop="105006"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYTKTGRGNFSALILGVSLHVGHSSGTIRKYVDIAFLNLILYCFGEITVGAAFFGPPRIPEAFTQV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0008H22.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105225" stop="105031"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WHKKGWIKLYQDRPGQFFCTDTWGITSCRPLIWHHQKVCRHCFPESYFVLLWRNHRWGCILRPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 191 chains have been computed
$ 
$ memory statistics:
$ 123920 bytes spliced alignments in total
$ 58 spliced alignments have been stored
$ 2136 bytes was the average size of a spliced alignment
$ 17984 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1998 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 230 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-26 22:45:09
-->
