<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 17:54:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E376499" ref_strand="+" ref_description="SGN-E376499 	[TUS-17-P17]">
      <seq>ctttttattttctctcattttttcttctaatttctatatgatataaaacaaaatttagttaatcctcaaaaagtttttattttctttcttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaagcggcggaagttagcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtcttggagaaaatatggacaaaaaccaattaaaggatcaccttatcccaggggatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgcttctcattacctattgctccgaacacaatcaccaaatcccggccgccgccgccgccaaacaccaccatcacaaccaccctactaccaccaccagttcacccactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="1755" stop="5600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2055" g_stop="2324" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2325" i_stop="2538" i_length="214">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2539" g_stop="2685" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="417" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2686" i_stop="5113" i_length="2428">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5114" g_stop="5300" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="604" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E376499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2055" e_stop="2324"/>
          <exon e_start="2539" e_stop="2685"/>
          <exon e_start="5114" e_stop="5300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACC</genome_strand>
        <mrna_strand>CTTTTTATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E268098" ref_strand="+" ref_description="SGN-E268098 	[cLEI-15-C19]">
      <seq>attttctctcattttttcttctaattgctatatgatataaaacaaaatttagttaatcctcaaaaagtttttattttctttcttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaagcggcggaagttagcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtcttggagaaaatatggacaaaaaccaattaaaggatcaccttatcccacgggatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgcttctcattaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="1761" stop="5506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2061" g_stop="2324" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2325" i_stop="2538" i_length="214">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2539" g_stop="2685" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="411" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2686" i_stop="5113" i_length="2428">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5114" g_stop="5206" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="504" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E268098" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2061" e_stop="2324"/>
          <exon e_start="2539" e_stop="2685"/>
          <exon e_start="5114" e_stop="5206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTA</genome_strand>
        <mrna_strand>ATTTTCTCTCATTTTTTCTTCTAATTGCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E267852" ref_strand="+" ref_description="SGN-E267852 	[cLEI-12-G12]">
      <seq>attttctctcattttttcttctaatttctatatgatataaaacaaaatttagttaatcctcaaaaagcttttattttctttcttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaaccggcggaagttatcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtcatttccgtgccaataattgaaggtgatggatcaagaagtaaaggggaagtgtatccaccacaagattcttggacttggagaatatatggacaaaaaccaattgaaggatcaccttatcccaggggatattatcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="1761" stop="2996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2061" g_stop="2324" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2325" i_stop="2538" i_length="214">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2539" g_stop="2685" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="411" r_length="147" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E267852" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2061" e_stop="2324"/>
          <exon e_start="2539" e_stop="2685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG</genome_strand>
        <mrna_strand>ATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGCTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAACCGGCGGAAGTTATCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTCATTTCCGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTGTATCCACCACAAGATTCTTGGACTTGGAGAATATATGGACAAAAACCAATTGAAGGATCACCTTATCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E267166" ref_strand="+" ref_description="SGN-E267166 	[cLEI-4-G11]">
      <seq>cgagtttttttttctaatttctatatgatgataaaacggaatttagttaatcctcaaaaagtttttattttctttcttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaagcggcggaagttagcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtcttggagaaaatatggacaaaaaccaattaaaggatcaccttatcccaggggatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgctcttcattacctattgctccgaacacaatcaccaaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="1769" stop="5533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2068" g_stop="2324" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2325" i_stop="2538" i_length="214">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2539" g_stop="2685" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="405" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2686" i_stop="5113" i_length="2428">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5114" g_stop="5233" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="525" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E267166" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2068" e_stop="2324"/>
          <exon e_start="2539" e_stop="2685"/>
          <exon e_start="5114" e_stop="5233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTTTCTTCTAATTTCTATATGAT-ATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCC</genome_strand>
        <mrna_strand>CGAGTTTTTTTTTCTAATTTCTATATGATGATAAAACGGAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTCTTCATTACCTATTGCTCCGAACACAATCACCAAATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E265951" ref_strand="+" ref_description="SGN-E265951 	[cLEI-6-M23]">
      <seq>cgagtttttttttctaatttctatatgatataaaacaaaatttagttaatcctcaaaaagtttttattttctttcttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaagcggcggaagttagcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtcttggagaaaatatggacaaaaaccaattaaaggatcaccttatcccaggggatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgcttcttattacctattgctccgaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="1769" stop="5520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2068" g_stop="2324" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2325" i_stop="2538" i_length="214">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2539" g_stop="2685" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="404" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2686" i_stop="5113" i_length="2428">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5114" g_stop="5220" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="511" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E265951" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2068" e_stop="2324"/>
          <exon e_start="2539" e_stop="2685"/>
          <exon e_start="5114" e_stop="5220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACA</genome_strand>
        <mrna_strand>CGAGTTTTTTTTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTTATTACCTATTGCTCCGAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E210676" ref_strand="+" ref_description="SGN-E210676 	[cLEC-68-N15]">
      <seq>acaaaatttagttaatcctcaaaaagtttttattttctttctttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaagcggcggaagttagcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtctttgagaaaatatggacaaaaaccaattaaaggatcaccttatcccaggggatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgcttctcattacctattgctccgaacacaatcaccaaatcccggccgccgccgccgccaaacaccaccatcacaaccaccctactaccaccaccagttcacccactacctctaccggcaccgccggagacaataatgctactgcggctgtagccacggactctaccgtagtagacaaatcatcccccgaagaaccagatctatttgcttatcaacacgataatggattttcagagctcgccggtgagttaggttggttttccgatatgggaacaacaactacgtttatggagagtacgtcgtcgtccatggcggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="1802" stop="5807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2102" g_stop="2324" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2325" i_stop="2538" i_length="214">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2539" g_stop="2685" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="371" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2686" i_stop="5113" i_length="2428">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5114" g_stop="5507" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="765" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E210676" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2102" e_stop="2324"/>
          <exon e_start="2539" e_stop="2685"/>
          <exon e_start="5114" e_stop="5507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTC-TTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGA</genome_strand>
        <mrna_strand>ACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTTGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E306882" ref_strand="+" ref_description="SGN-E306882 	[cLEY-11-N4]">
      <seq>tcaaccgcaccacctaaaggacagacgattaatatcaaagatgaaggatctgcttggaaaaagtttgggtgctgttcgagctagggctcacgtaagacaatagctcaagctttatatatcagttgtaaattgtcattaaatcaatgatttcctctccctgttttctctcactttgggtatcgcgattgtgggatataagatttattctatagtcatgagaatacgtgaagcagcgcgttctcatgaaaaattccgaaggaggatcaggtactgctagtttctaattacagaatgtctaaacaaggtcttagttttatgttttctggttgatggcttgaaaaactggagatatctttgcaataacctgttaccgaatatcttcttatttgtctcgaatttacgtcttaattatttttccccttctaaaagtgtatttcctgagctgagtagcaatgtttgttgttcatgatatgtgtagtttgataaattaaagtagaacatggcaaggtgtgcccagagttgatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="7396" stop="6269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7096" g_stop="6561" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E306882" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7096" e_stop="6561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAAGTGTATTTCCTGAGCTGAGTAGCAATGTTTGTTGTTCATGATATGTGTAGTTTGATAAATTAAAGTAGAACATGGCAAGGTGTGCCCAGAGTTGATTTAAGTGGATGA</genome_strand>
        <mrna_strand>TCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAAGTGTATTTCCTGAGCTGAGTAGCAATGTTTGTTGTTCATGATATGTGTAGTTTGATAAATTAAAGTAGAACATGGCAAGGTGTGCCCAGAGTTGATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E376733" ref_strand="-" ref_description="SGN-E376733 	[TUS-19-O22]">
      <seq>aacattgtagtcatgctcctaggcaacaaatcagatttccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattagaagcgaccaacgttgaaaatgcgtttactgaagctctcacgcagatataccggatcgtcagtaagaaagcagtcgaggcaggggacgaaggtgctacttcaaccgccccccctaaaggacagacgattaatatcaaagatgaaggatctgcttggaaaaagtttgggtgctgttcgagctagggctcacgtaagacaatagctcaagctttatatatcagttgtaaattgtcattaaatcaatgatttcctctccctgttttctctcactttgggtatcgcgattgtgggatataagatttattctatagtcatgagaatacgtgaagcagcgcgttctcatgaaaaattccgaaggaggatcaggtactgctagtttctaattacagaatgtctaaacaaggtcttagttttatgttttctggttgatggcttgaaaaactggagatatctttgcaataacctgttaccgaatatctttttatttgtctcgaatttacgtcttaattatttttccccttctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="7618" stop="6369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7318" g_stop="6669" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="670"/>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E376733" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376733" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7318" e_stop="6669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAA</genome_strand>
        <mrna_strand>AACATTGTAGTCATGCTCCTAGGCAACAAATCAGATTTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCCCCCCCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTTTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E544321" ref_strand="-" ref_description="SGN-E544321 	[TUS-66-J13]">
      <seq>gaaagggaatgtattgggatgcatccttgttcctttaagttgttgtactattgcttcagtttttcttcttcataccaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattagaagcgaccaacgttgaaaatgcgtttactgaagctctcacgcagatataccggatcgtcagtaagaaagcagtcgaggcaggggacgaaggtgctacttcaaccgcaccacctaaaggacagacgattaatatcaaagatgaaggatctgcttggaaaaagtttgggtgctgttcgagctagggctcacgtaagacaatagctcaagctttatatatcagttgtaaattgtcattaaatcaatgatttcctctccctgttttctctcactttgggtatcgcgattgtgggatataagatttattctatagtcatgagaatacgtgaagcagcgcgttctcatgaaaaattccgaaggaggatcaggtactgctagtttctaattacagaatgtctaaacaaggtcttagttttatgttttctggttgatggcttgaaaaactggagatatctttgcaataaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="7826" stop="6434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7526" g_stop="6741" g_length="786"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="786" r_length="786" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="789" polyA_stop="809"/>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E544321" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544321" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7526" e_stop="6741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTT</genome_strand>
        <mrna_strand>GAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E239707" ref_strand="+" ref_description="SGN-E239707 	[cLED-33-C3]">
      <seq>ggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattagaagcgaccaacgttgaaaatgcgtttactgaagctctcacgcagatataccggatcgtcagtaagaaagcagtcgaggcaggggacgaaggtgctacttcaaccgcaccacctaaaggacagacgattaatatcaaagatgaaggatctgcttggaaaaagtttgggtgctgttcgagctagggctcacgtaagacaatagctcaagctttatatatcagttgtaaattgtcattaaatcaatgatttcctctccctgttttctctcactttgggtatcgcgattgtgggatataagatttattctatagtcatgagaatacgtgaagcagcgcgttctcatgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="7650" stop="6546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7350" g_stop="6846" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E239707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7350" e_stop="6846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAAT</genome_strand>
        <mrna_strand>GGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E231675" ref_strand="+" ref_description="SGN-E231675 	[cLED-4-I10]">
      <seq>ggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattagaagcgaccaacgttgaaaatgcgtttactgaagctctcacgcagatataccggatcgtcagtaagaaagcagtcgaggcaggggacgaaggtgctacttcaaccgcaccacctaaaggacagacgattaatatcaaagatgaaggatctgcttggaaaaagtttgggtgctgttcgagctagggctcacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="7650" stop="6704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7350" g_stop="7006" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E231675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7350" e_stop="7006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCAC</genome_strand>
        <mrna_strand>GGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E273657" ref_strand="+" ref_description="SGN-E273657 	[cLEN-6-L11]">
      <seq>tgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgagccattacgagtgcttattatcggggagctgtcggtgctttgctcggatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattagaagcgaccaacgttgaagatgcgtttactgaagctctcacgcagatataccggatcgtcagtaagaaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="12091" stop="6823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11791" g_stop="11623" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11622" i_stop="7449" i_length="4174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7448" g_stop="7123" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="495" r_length="326" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E273657" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11791" e_stop="11623"/>
          <exon e_start="7448" e_stop="7123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAG</genome_strand>
        <mrna_strand>TGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGAGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGGATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAGATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E376734" ref_strand="+" ref_description="SGN-E376734 	[TUS-19-O22]">
      <seq>ttttcttcttcaaaattgaatcttttcagtgaacttttactatttggtcaatcaagaagtgaaattacagagcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcatatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctaatacttcatggaaacttctgcattagaagcgaccaacgtgaaaatgcgtttactgaagctttcacgcagatataccggatcgtcagtaagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="12238" stop="6826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11938" g_stop="11623" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11622" i_stop="7449" i_length="4174">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7448" g_stop="7126" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="639" r_length="323" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E376734" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11938" e_stop="11623"/>
          <exon e_start="7448" e_stop="7126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCT-ATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAG</genome_strand>
        <mrna_strand>TTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCATATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTAATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACG-TGAAAATGCGTTTACTGAAGCTTTCACGCAGATATACCGGATCGTCAGTAAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E268493" ref_strand="+" ref_description="SGN-E268493 	[cLEI-13-I13]">
      <seq>caaaattgaatcttttcagtgaacttttactatttggtcaatcaagaagtgaaattacagagcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="12228" stop="6897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11928" g_stop="11623" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11622" i_stop="7449" i_length="4174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7448" g_stop="7197" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="558" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E268493" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11928" e_stop="11623"/>
          <exon e_start="7448" e_stop="7197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATT</genome_strand>
        <mrna_strand>CAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E233218" ref_strand="+" ref_description="SGN-E233218 	[cLED-6-C3]">
      <seq>ttttcttcttcaaaattgaatcttttcagtgaacttttactatttggtcaatcaagaagtgaaattacagagcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="12238" stop="6917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11938" g_stop="11623" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11622" i_stop="7449" i_length="4174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7448" g_stop="7217" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="548" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E233218" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11938" e_stop="11623"/>
          <exon e_start="7448" e_stop="7217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATAC</genome_strand>
        <mrna_strand>TTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E203753" ref_strand="+" ref_description="SGN-E203753 	[cLEC-17-G14]">
      <seq>tatttttttcttcttcaaaattgaatcttttcagtgaacttttactatttggtcaatcaagaagtgaaattacagagcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="12243" stop="6985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11943" g_stop="11623" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11622" i_stop="7449" i_length="4174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7448" g_stop="7285" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="485" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E203753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11943" e_stop="11623"/>
          <exon e_start="7448" e_stop="7285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAG</genome_strand>
        <mrna_strand>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E203863" ref_strand="+" ref_description="SGN-E203863 	[cLEC-17-E22]">
      <seq>tatttttttcttcttcaaaattgaatcttttcagtgaacttttactatttggtcaatcaagaagtgaaattacagagcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="12243" stop="7002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11943" g_stop="11623" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11622" i_stop="7449" i_length="4174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7448" g_stop="7302" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="468" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E203863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11943" e_stop="11623"/>
          <exon e_start="7448" e_stop="7302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCT</genome_strand>
        <mrna_strand>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E231719" ref_strand="+" ref_description="SGN-E231719 	[cLED-4-L19]">
      <seq>ttttcttcttcaaaattgaatcttttcagtgaacttttactatttggtcaatcaagaagtgaaattacagagcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="12238" stop="7003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11938" g_stop="11623" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11622" i_stop="7449" i_length="4174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7448" g_stop="7303" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="462" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E231719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11938" e_stop="11623"/>
          <exon e_start="7448" e_stop="7303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGC</genome_strand>
        <mrna_strand>TTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E544322" ref_strand="+" ref_description="SGN-E544322 	[TUS-66-J13]">
      <seq>gtgatgattataagacatataaaacatgttaataaaaaggagtagagaagtatatgcgaaaattcaaactacaaacttagttccaaactaaactgtcattttgaaatatagatgttttacatggattcttcattaatcattatcatcaatatacgtgtttgagtgattgtgatgtgggcatggttacttcatgtagatacactcaaaattagcgaaaagtctataagtacacatactagatacgtatgcacatcataggaataataaatctttggattagttaggcataaactaaaccaagatgcccccaaggcctagctcgagtggcaaaaggtggaggatttgtgacttaggtcgcaggttcaagcccacaccatgcaaagcgaagcctggtatttaagtggggaagggtaagaaggggtggacccattatccaccgagtttagaaggttgtgattggtccaaagggcagtgggtcacggataaataaataattggaagtcatatttgtatgtgatacaacttaaagtactgacaaaaagaattgagatacaacttaaggtaacattcgaacttctgtaggattttttagtaaaggtggttttcaggccattttgagccacctgttacgttctaaatcaccagtatagttatccggtaactgtctatcaaagcttagacaaatgggaagatgtcaccctacattttttgcctatgctaggacttgatcccagaaatcccatggttttaatctatttcattgacactaccctggctttttataacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="9904" stop="8516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9604" g_stop="8816" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E544322" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9604" e_stop="8816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGT-AG-AGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCT</genome_strand>
        <mrna_strand>GTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAAGAAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAAT-CACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E306241" ref_strand="+" ref_description="SGN-E306241 	[cLEY-13-D18]">
      <seq>tgatgattataagacatataaaacatgttaataaaaaggagtagagaagtatatgcgaaaattcaaactacaaacttagttccaaactaaactgtcattttgaaatatagatgttttacatggattcttcattaatcattatcatcaatatacgtgtttgagtgattgtgatgtgggcatggttacttcatgtagatacactcaaaattagcgaaaagtctataagtacacatactagatacgtatgcacatcataggaataataaatctttggattagttaggcataaactaaaccaagatgcccccaaagcctagctcgagtggcaaaaggtggaggatttgtgacttaagtcgcaggttcaagcccacaccatgcaaagcgaagcctggtatttaagtggggaaaggtagaggggtggacccattatccaccgagtttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="9903" stop="8861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9603" g_stop="9161" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E306241" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9603" e_stop="9161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAG</genome_strand>
        <mrna_strand>TGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAAGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAAGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E317989" ref_strand="+" ref_description="SGN-E317989 	[cTOA-30-J17]">
      <seq>gggaactagtctcgagttttttttttttttttttgtgtgtttgggatttagatgagtgagaagtgcttgtgggtttgttggtttaatcttatttttggtaaggttcttcaaatgatgttgtgtttattggtattttctaagagtgtctagatgtgctgttgttgcttgattgggatttcttgtctttgggtgtggtatctgtgttcctaattgaaattcgagggacatggagtgcttactgcaaccaattatatataaaaaaaaaagaagaatatttttccgtgtttggttcatgaaaaagaatatcgtgagagcattttgaagacgtaatgaagtaaatcaaagtgtgttgccccaatggacttttagatgagatgatcatacaattcaacatttgtgcaggctatgtgtgctcctagttgtttagatgctattgtgatgtcaatctgaaagctaattatagaaattgtagtatccaaatttgttgttttaaaattatttgaacttattcagttcccgcacgagtacattggcaggtatgttttttctaatatgaaaaataattgaccaaagtaactcaatatttcctcataatttttgaaatccttagctattttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="69323" stop="10002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11270" g_stop="11255" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11254" i_stop="10908" i_length="347">
            <donor d_prob="0.879" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10907" g_stop="10302" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="621" r_length="606" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E317989" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11270" e_stop="11255"/>
          <exon e_start="10907" e_stop="10302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTG</genome_strand>
        <mrna_strand>GGGAAC-TAGTCTCGA...........................................................................................................................................................................................................................................................................................................................................................GTTTTTTTTTTTTTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E243501" ref_strand="+" ref_description="SGN-E243501 	[cLED-34-D4]">
      <seq>gaaaagcggtcagcacattgtggaagtaaagcctcagggggtcaccaaaggtttagttgcagaaaaagtctttacatctttagcggagaaaggaaaactggcggattttgtgctttgcattggtgatgatagatcagatgaagatatgtttgaaatcattggcgatgctttgtccagaaatattatttcatatgatgccaaggtatttgcttgcacagttggacaaaaacctagcaaagcaaagtattacttggatgacacatctgaggtggtgcttatgctagactcccttgctgatgccactgatactccagtgacttctgatgacgatgaacctgcggactccgactgaatgtagctaccagatgttttgtttgcttcggttaccttctctattgaatgtatattccaggtctgaagatggcacattgtccatttgagttcggtttcgaggtttaagacggtggaatctcaaattctgttcaatcattctttcctttctgattgttctattcttttatcattagcctgtatgtaatatatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="20619" stop="23949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20919" g_stop="20955" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20956" i_stop="23138" i_length="2183">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23139" g_stop="23649" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="548" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E243501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20919" e_stop="20955"/>
          <exon e_start="23139" e_stop="23649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCGGTCAGCACATTGTGGAAGTAAAGCCTCAGGCACGTATTACTTATCCCAACTTCCATATGAGTTCATTCATATTTGTTGCTTGTATTCCAAGATTTACACTTCAGAAATGTTACCTAGCGTCCTTAGTAAATGACCCCTTCTCTTATTGATGAGTCTCCTCTCCCAAAAAACAGTGTTTGGTTTCCACTCCCTTGTAATCTGGATAAAACTCTTTTATTAGCTATCGGTGTTTAGATGAGATATATGATCATGTTTACCGTAGAACCTTATACATCCTTTATTTCCTGTATATGACAATGTGCTGATCTCCACCTTAAGGGTGTGTTTGGTTAGGAGGTTTCCAGCTTTTTCCATGTTTGGTTGGTCATGATATTTTGGAAAGCATTTTCTCTGGTGAACAAGTTCATTGTCTCCTGCCCACCCACCTAGCTGCTAACCCCCATCCTTGACAATCTCACTCCTCGTCCCTGCCACTTCACCTTCCCACCCCATCCCACCCTCAAAGTGTTTTGCTTGATTACATATAAATGTTCTTGTGATCATATGTTTTGTTTACTTACCTAACACTAGAAAATAAGTAAGAAAATGTTTTCCTAATACCAAACACGCCCTAAATATGGCATTTGCTTTATGGGTCACTTGTTGGTTATATTGCTTATAAGGATGGTGTATATTCTTTTTTCGTAAGTGTGGAGGGTAATGCTTTCAAGCTTGCATCAATCTCCATTAGCTATCCCTTTATGTAATTCAGTATTATCATCCTCCATATTAAATGCATAGTTTATGTTTAGTCCAACAACATACCCAGTGTAATCCCACAAGGTGGAGTATTGGGAGGGTAGAGCGTACCGTAGCTTGTGCAGGTAGAGTGGTTGTTTCCGGTAGACCGTAACAACAACATGATAATAAGAAGCACAAGACTTGTACTGATGCTAATGCTACTCGTAAGGAAAAACAGAATGCGAACAATCTCAATAATACTAATACTAATACTAATGCTACTCAAAGGAAAAACAGAATGCAAGGCTACCTACTATAGTCTTATACCCTAATTCTCGACCTCTACACCCTCCTATCTAGGGTCATGTCCATGACCCTTGGTGTAAGCTGAAGACTTGCCATGTCCTGCCTAAACTCCTCTCCCCAATACTTCTTTGGCCTACCTTACTCTACCTCTCCTCTAGTCGTAACATCAGCCTCTCATACATCCTCACTAGTGTGTCTTGTGGAACTCCTCTTGACATACTCTTAGCCATTTCAGCCTTGCCTCCCGCATCTTGTCCGACATGGAGGCCACTCCCACTTTTTTCCAAATATCTTCATTTTGACCATATCTCTCTTAAGTAAGCCCACCCACCCATCCATCTCAACATCCTCATCTCTACAATTTTCATCTTCTGCACATGGGAGTCTTGACTAGCAACAACACTCCGCCCCATACAACAATGTTTTAAGTTACTTTCAACTTTTGGTGTCACCTTATCACAAAACACACCAGATGCTAGCCGTTTATTTCAACTACCACCTATAATGCTATCTGCGACATTCTCATCAATCTCCCCATTATCTTGGATAATAGCCCCAACTCCCAAGGTACTTGAAACTCCCTCTCGTGGAGATGGCTTGAGAATCCAACCTCGTTTCCACATTACCTTTGCGTGTCACAACACTGAATTTGCACTCCACGTACTTTGCCTTATTTCTACTCAATCCAAAACCTTTAGACTCCATGATCTGTCTCCAGACCTCTAGCCTGTCGTTAACTCCCCGTCTTGTCAACAAGTACTATGTCATCTCCAAATAACATGCACCAAAGCACCTCCCTTTGTATGTGCTACGTCAATACATCCATCGTCAAAGAAAATAAAACGTTATTTTTTAATTGATGTGCCATTAATCCATGCGTAGGTTATTTGCGAGCTAAAGAGCCTTTAGTATTTACTCAAGTAATTGGTTGAGAGCTGCAATTTCTTTGCTAGTGACAAGTGACTACCTGGCATATATTTCCTCTCTAGATAAAGATGATGTTAACGTAATAATTTTAACAACAATAGTAGTGTATTCTTTTTCACTGTTCTGATTGCTATTGTCAAATTCTTGAGTATCTTGAATATATCGTTTTCGTTTAATGCTTTTTGACGTGTATTTTAGTGTTGATTGCAGTCAACATCCTAGTATGTGTTCCGAATGACATTAATTTTCTCTTTTTCAGGGGGTCACCAAAGGTTTAGTTGCAGAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTG</genome_strand>
        <mrna_strand>GAAAAGCGGTCAGCACATTGTGGAAGTAAAGCCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTCACCAAAGGTTTAGTTGCAGAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E323833" ref_strand="+" ref_description="SGN-E323833 	[cTOC-5-F23]">
      <seq>gaaaaagtctttacatctttagcggagaaaggaaaactggcggattttgtgctttgcattggtgatgatagatcagatgaagatatgtttgaaatcattggcgatgctttgtccagaaatattatttcatatgatgccaaggtatttgcttgcacagttggacaaaaacctagcaaagcaaagtattacttggatgacacatctgaggtggtgcttatgctagactcccttgctgatgccactgatactccagtgacttctgatgacgatgaacctgcggactccgactgaatgtagctaccagatgttttgtttgcttcggttaccttctctattgaatgtatattccaggtctgaagatggcacattgtccatttgagttcggtttcgaggtttaagacggtggaatctcaaattctgttcaatcattctttcctttctgattgttctattcttttatcattagcctgtatgtaatatatctctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="22863" stop="23950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23163" g_stop="23650" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E323833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23163" e_stop="23650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTGA</genome_strand>
        <mrna_strand>GAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E393450" ref_strand="+" ref_description="SGN-E393450 	[TUS-38-A4]">
      <seq>tttttttttttacagtgaagaaaagactagttctatatcaaatgtgaaaatttgcttcatacacaaatgcacaaaagtgttttttaactttcttatagtctatatattgtttatactctagatcaaattagggggataagtgtatgtgaattgtacaagttgcagtatatgttcaagctattatacagctgctggggtaggaacagcagcagggacgcggttttcagcaggaatttcaacaaattctgagagaatagcacggaattcatctccagtcatcgtctccttttcaaggaggacttccacaatcttatcaattgcttcacggttgctgcggatttggctcaatgcaatctcatatgcactgtctgaaagcttcttcacagcaacatcaatgtcttcagctagcttttctgacatcgagttcctggccatcattctcatgattacatcaccactttgggctgaagaatccatgagggaccacgggccaagttcagacataccaaaagtgacaaccatctgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="26637" stop="27752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26928" g_stop="27458" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E393450" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26928" e_stop="27458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTAGCATTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGCATGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E396240" ref_strand="+" ref_description="SGN-E396240 	[TUS-41-M1]">
      <seq>tttttttttttacagtgaagaaaagactagttctatatcaaatgtgaaaatttgcttcatacacaaatgcacaaaagtgttttttaactttcttatagtctatatattgtttatactctagatcaaattagggggataagtgtatgtgaattgtacaagttgcagtatatgttcaagctattatacagctgctggggtaggaacagcagcagggacgcggttttcagcaggaatttcaacaaattctgagagaatagcacggaattcatctccagtcatcgtctccttttcaaggaggacttccacaatcttatcaattgcttcacggttgctgcggatttggctcaatgcaatctcatatgcactgtctgaaagcttcttcacagcaacatcaatgtcttcagctagcttttctgacatcgagttcctggccatcattctcatgattacatcaccactttgggctgaagaatccatgagggaccacgggccaagttcagacataccaaaagtgacaaccatctgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="26637" stop="27752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26928" g_stop="27458" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E396240" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26928" e_stop="27458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTAGCATTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGCATGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E374419" ref_strand="+" ref_description="SGN-E374419 	[TUS-38-B4]">
      <seq>caaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="27752" stop="26637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27449" g_stop="26928" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="530" r_length="522" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E374419" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27449" e_stop="26928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAG</genome_strand>
        <mrna_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E390186" ref_strand="+" ref_description="SGN-E390186 	[TUS-41-M1]">
      <seq>gcaaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="27752" stop="26637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27449" g_stop="26928" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="531" r_length="522" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E390186" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27449" e_stop="26928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAG</genome_strand>
        <mrna_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E393233" ref_strand="+" ref_description="SGN-E393233 	[TUS-38-A4]">
      <seq>gcaaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="27752" stop="26637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27449" g_stop="26928" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="531" r_length="522" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E393233" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27449" e_stop="26928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAG</genome_strand>
        <mrna_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E374418" ref_strand="+" ref_description="SGN-E374418 	[TUS-38-B4]">
      <seq>ttttttttttacagtgaataaaagactagttctatatcaaatgtgaaaatttgcttcatacacaaatgcacaaaagtgttttttaactttcttatagtctatatattgtttatactctagatcaaattagggggataagtgtatgtgaattgtacaagttgcagtatatgttcaagctattatacagctgctggggtaggaacagcagcagggacgcggttttcagcaggaatttcaacaaattctgagagaatagcacggaattcatctccagtcatcgtctccttttcaaggaggacttccacaatcttatcaattgcttcacggttgctgcggatttggctcaatgcaatctcatatgcactgtctgaaagcttcttcacagcaacatcaatgtcttcagctagcttttctgacatcgagttcctggccatcattctcatgattacatcaccactttgggctgaagaatccatgagggaccacgggccaagttcagacataccaaaagtgacaaccatctgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="26637" stop="27752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26929" g_stop="27458" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E374418" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26929" e_stop="27458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAGCATTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGCATGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTACAGTGAATAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E293388" ref_strand="+" ref_description="SGN-E293388 	[cLET-18-J23]">
      <seq>caaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagctggaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacctttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="27752" stop="26637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27449" g_stop="26938" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="520" r_length="512" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="521" polyA_stop="531"/>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E293388" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27449" e_stop="26938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTA</genome_strand>
        <mrna_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTGGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACCTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E218307" ref_strand="-" ref_description="SGN-E218307 	[cLEL-23-L11]">
      <seq>gacattgatgttgctgtaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttccctgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="27626" stop="26637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27326" g_stop="26938" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="404"/>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E218307" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218307" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27326" e_stop="26938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTA</genome_strand>
        <mrna_strand>GACATTGATGTTGCTGT-AAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCCCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E217807" ref_strand="-" ref_description="SGN-E217807 	[cLEL-23-L11]">
      <seq>agctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcnctgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="27604" stop="26637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27304" g_stop="26938" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="383"/>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E217807" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217807" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27304" e_stop="26938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTA</genome_strand>
        <mrna_strand>AGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCNCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E261252" ref_strand="+" ref_description="SGN-E261252 	[cLEG-68-K3]">
      <seq>gatgactggagatgaattccgtgctattctctcacaatctgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccaccaactgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagacttttcttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="27507" stop="26641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27207" g_stop="26941" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E261252" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27207" e_stop="26941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACT</genome_strand>
        <mrna_strand>GATGACTGGAGATGAATTCCGTGCTATTCTCTCACAATCTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCACCAACTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGACTTTTCTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E302032" ref_strand="+" ref_description="SGN-E302032 	[cLEX-3-O6]">
      <seq>ggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatgcgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttgctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="27702" stop="26658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27402" g_stop="26954" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E302032" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27402" e_stop="26954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAG</genome_strand>
        <mrna_strand>GGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATGCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTGCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E552943" ref_strand="+" ref_description="SGN-E552943 	[cTSB-5-I2]">
      <seq>agagcaagagtctggtggcatatcacgaagttggacatgccatctgtggaactctcactccagggcatgatgctgtacaaaaggtcactctaatcccacgtggtcaggcaaaaggtttgacctggttcattcctgcagatgacccaaccttaatatccaagcaacaactctttgctagaattgttggtggacttggtggaagagctgcagaagaagtgatctttggtgaacctgaagtgaccactggtgctgctggtgatttgcagcagatcactggtttggcaaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="28610" stop="26696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28310" g_stop="28262" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28261" i_stop="28084" i_length="178">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28083" g_stop="27843" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="290" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27842" i_stop="27450" i_length="393">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27449" g_stop="26996" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="744" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E552943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28310" e_stop="28262"/>
          <exon e_start="28083" e_stop="27843"/>
          <exon e_start="27449" e_stop="26996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCAAGAGTCTGGTGGCATATCACGAAGTTGGACATGCCATCTGTGGGTGAGTGCTGCACCATTAGCTAGTTACTCCTGGCTCCTGATTTGCATCTATTATATAAGCATTTTTTATAACAATATTATGAGTTTATTATTGTGTTGGCATTTTAATTACCCAACAGTGATTTCAACAGAATATCCTGGTGAGCCTCTAATGGCACTATGTGTTCTTTGCCATGCAGAACTCTCACTCCAGGGCATGATGCTGTACAAAAGGTCACTCTAATCCCACGTGGTCAGGCAAAAGGTTTGACCTGGTTCATTCCTGCAGATGACCCAACCTTAATATCCAAGCAACAACTCTTTGCTAGAATTGTTGGTGGACTTGGTGGAAGAGCTGCAGAAGAAGTGATCTTTGGTGAACCTGAAGTGACCACTGGTGCTGCTGGTGATTTGCAGCAGATCACTGGTTTGGCAAAACAGGTATATATGCTCACTGCCTTTTTTGTGTTAAGGATTCTGGAACGGAATATATGTTGAGGTAATCTGTGGAGACTAGAAATTCTACAGAGTGATTGGTTTTGAATTAACCTCTACTTCCCGTTTCCTTCAAAAGATTATAGAGATAAGAGCAATACAATTATTCCCTCTGTTTCAATTTATGTGGTTTTGTTTGAAAAGATTTTTGGGTTTGTGATCTTAAACATGCCATGAAACTTCTGTGGCTATAAAGTTAAAATTGTTTTCAAATATAGAAACGTTAACATTCATTTTGGATAAGACTAACAACAGCATAGTGTCACATTATTGGAAAGGAGCGAGTAGTTTTATCTTCTTTTTGACTTAGTTCTGTAAAATGACAAACTGTTCATGCAGATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGC</genome_strand>
        <mrna_strand>AGAGCAAGAGTCTGGTGGCATATCACGAAGTTGGACATGCCATCTGTGG..................................................................................................................................................................................AACTCTCACTCCAGGGCATGATGCTGTACAAAAGGTCACTCTAATCCCACGTGGTCAGGCAAAAGGTTTGACCTGGTTCATTCCTGCAGATGACCCAACCTTAATATCCAAGCAACAACTCTTTGCTAGAATTGTTGGTGGACTTGGTGGAAGAGCTGCAGAAGAAGTGATCTTTGGTGAACCTGAAGTGACCACTGGTGCTGCTGGTGATTTGCAGCAGATCACTGGTTTGGCAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E303016" ref_strand="+" ref_description="SGN-E303016 	[cLEW-26-G4]">
      <seq>tctcttgaagttattgccatgaggacaccgggtttcagtggagcagatcttgctaacctcttaaatgaagcagccattcttgcaggtcgacgtggtaagacagcaatcgcatccaaagagattgatgattcaattgataggatagtggctggtatggaaggaacagtcatgactgatggcaagagcaagagtctggtggcatatcacgaagttggacatgccatctgtggaactctcactccagggcatgatgctgtacaaaaggtcactctaatcccacgtggtcaggcaaaaggtttgacctggttcattcctgcagatgacccaaccttaatatccaagcaacaactctttgctagaattgttggtggacttggtggaagagctgcagaagaagtgatctttggtgaacctgaagtgaccactggtgctgctggtgatttgcagcagatcactggtttggcaaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="28791" stop="27012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28491" g_stop="28262" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28261" i_stop="28084" i_length="178">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28083" g_stop="27843" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="471" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27842" i_stop="27450" i_length="393">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27449" g_stop="27312" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="609" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E303016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28491" e_stop="28262"/>
          <exon e_start="28083" e_stop="27843"/>
          <exon e_start="27449" e_stop="27312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTCAATTGATAGGATAGTGGCTGGTATGGAAGGAACAGTCATGACTGATGGCAAGAGCAAGAGTCTGGTGGCATATCACGAAGTTGGACATGCCATCTGTGGGTGAGTGCTGCACCATTAGCTAGTTACTCCTGGCTCCTGATTTGCATCTATTATATAAGCATTTTTTATAACAATATTATGAGTTTATTATTGTGTTGGCATTTTAATTACCCAACAGTGATTTCAACAGAATATCCTGGTGAGCCTCTAATGGCACTATGTGTTCTTTGCCATGCAGAACTCTCACTCCAGGGCATGATGCTGTACAAAAGGTCACTCTAATCCCACGTGGTCAGGCAAAAGGTTTGACCTGGTTCATTCCTGCAGATGACCCAACCTTAATATCCAAGCAACAACTCTTTGCTAGAATTGTTGGTGGACTTGGTGGAAGAGCTGCAGAAGAAGTGATCTTTGGTGAACCTGAAGTGACCACTGGTGCTGCTGGTGATTTGCAGCAGATCACTGGTTTGGCAAAACAGGTATATATGCTCACTGCCTTTTTTGTGTTAAGGATTCTGGAACGGAATATATGTTGAGGTAATCTGTGGAGACTAGAAATTCTACAGAGTGATTGGTTTTGAATTAACCTCTACTTCCCGTTTCCTTCAAAAGATTATAGAGATAAGAGCAATACAATTATTCCCTCTGTTTCAATTTATGTGGTTTTGTTTGAAAAGATTTTTGGGTTTGTGATCTTAAACATGCCATGAAACTTCTGTGGCTATAAAGTTAAAATTGTTTTCAAATATAGAAACGTTAACATTCATTTTGGATAAGACTAACAACAGCATAGTGTCACATTATTGGAAAGGAGCGAGTAGTTTTATCTTCTTTTTGACTTAGTTCTGTAAAATGACAAACTGTTCATGCAGATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCT</genome_strand>
        <mrna_strand>TCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTCAATTGATAGGATAGTGGCTGGTATGGAAGGAACAGTCATGACTGATGGCAAGAGCAAGAGTCTGGTGGCATATCACGAAGTTGGACATGCCATCTGTGG..................................................................................................................................................................................AACTCTCACTCCAGGGCATGATGCTGTACAAAAGGTCACTCTAATCCCACGTGGTCAGGCAAAAGGTTTGACCTGGTTCATTCCTGCAGATGACCCAACCTTAATATCCAAGCAACAACTCTTTGCTAGAATTGTTGGTGGACTTGGTGGAAGAGCTGCAGAAGAAGTGATCTTTGGTGAACCTGAAGTGACCACTGGTGCTGCTGGTGATTTGCAGCAGATCACTGGTTTGGCAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E329824" ref_strand="+" ref_description="SGN-E329824 	[cTOD-3-F9]">
      <seq>agaccctgaaccaactattgactgaaatggatggtttcgaaggaaatactggtataatagttgttgcggcaaccaatcgtgcagatattcttgactctgctttgctgaggccaggacgatttgatagacaagtatccgtggatgtcccagacatcaagggaagaacagagatcttaaaggttcatgccggcaacaagaagtttgattcagatgtgtctcttgaagttattgccatgaggacaccgggtttcagtggagcagatcttgctaacctcttaaatgaagcagccattcttgcaggtcgacgtggtaagacagcaatcgcatccaaagagattgatgattcaattgataggatagtggctggtatggaaggaacagtcatgactgatggcaagagcaagagtctggtggcatatcacgaagttggacatgccatctgtggaactctcactccagggcatgatgctgtacaaaaggtcactctaatcccacgtggtcaggcaaaaggtttgacctggttcattcctgcagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="29080" stop="27692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28780" g_stop="28650" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28649" i_stop="28576" i_length="74">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28575" g_stop="28262" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="445" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28261" i_stop="28084" i_length="178">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28083" g_stop="27992" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="537" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E329824" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28780" e_stop="28650"/>
          <exon e_start="28575" e_stop="28262"/>
          <exon e_start="28083" e_stop="27992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAAGTAAGCATCTGTCCTTGCCTCCGTTATTTAACTGTGACTTTTGCAAGAAACTAAAATTTACCGCTCTTATGTAGGTATCCGTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTCAATTGATAGGATAGTGGCTGGTATGGAAGGAACAGTCATGACTGATGGCAAGAGCAAGAGTCTGGTGGCATATCACGAAGTTGGACATGCCATCTGTGGGTGAGTGCTGCACCATTAGCTAGTTACTCCTGGCTCCTGATTTGCATCTATTATATAAGCATTTTTTATAACAATATTATGAGTTTATTATTGTGTTGGCATTTTAATTACCCAACAGTGATTTCAACAGAATATCCTGGTGAGCCTCTAATGGCACTATGTGTTCTTTGCCATGCAGAACTCTCACTCCAGGGCATGATGCTGTACAAAAGGTCACTCTAATCCCACGTGGTCAGGCAAAAGGTTTGACCTGGTTCATTCCTGCAGATG</genome_strand>
        <mrna_strand>AGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAA..........................................................................GTATCCGTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTCAATTGATAGGATAGTGGCTGGTATGGAAGGAACAGTCATGACTGATGGCAAGAGCAAGAGTCTGGTGGCATATCACGAAGTTGGACATGCCATCTGTGG..................................................................................................................................................................................AACTCTCACTCCAGGGCATGATGCTGTACAAAAGGTCACTCTAATCCCACGTGGTCAGGCAAAAGGTTTGACCTGGTTCATTCCTGCAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E208102" ref_strand="+" ref_description="SGN-E208102 	[cLEC-34-B24]">
      <seq>tggaattggaggaggaaatgatgaaagggaacagaccctgaaccaactattgactgaaatggatggtttcgaaggaaatactggtataatagttgttgcggcaaccaatcgtgcagatattcttgactctgctttgctgaggccaggacgatttgatagacaagtatccgtggatgtcccagacatcaagggaagaacagagatcttaaaggttcatgccggcaacaagaagtttgattcagatgtgtctcttgaagttattgccatgaggacaccgggtttcagtggagcagatcttgctaacctcttaaatgaagcagccattcttgcaggtcgacgtggtaagacagcaatcgcatccaaagagattgatgattcaattgataggatagtggctggtatggaaggaacagtcatgactgatggcaagagcaagagtctggtggcatatcacgaagttggacatgccatctgtggaactctcactccagggcatgatgctgtacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="29112" stop="27753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28812" g_stop="28650" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28649" i_stop="28576" i_length="74">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28575" g_stop="28262" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="477" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28261" i_stop="28084" i_length="178">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28083" g_stop="28053" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="508" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E208102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28812" e_stop="28650"/>
          <exon e_start="28575" e_stop="28262"/>
          <exon e_start="28083" e_stop="28053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAAGTAAGCATCTGTCCTTGCCTCCGTTATTTAACTGTGACTTTTGCAAGAAACTAAAATTTACCGCTCTTATGTAGGTATCCGTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTCAATTGATAGGATAGTGGCTGGTATGGAAGGAACAGTCATGACTGATGGCAAGAGCAAGAGTCTGGTGGCATATCACGAAGTTGGACATGCCATCTGTGGGTGAGTGCTGCACCATTAGCTAGTTACTCCTGGCTCCTGATTTGCATCTATTATATAAGCATTTTTTATAACAATATTATGAGTTTATTATTGTGTTGGCATTTTAATTACCCAACAGTGATTTCAACAGAATATCCTGGTGAGCCTCTAATGGCACTATGTGTTCTTTGCCATGCAGAACTCTCACTCCAGGGCATGATGCTGTACAA</genome_strand>
        <mrna_strand>TGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAA..........................................................................GTATCCGTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTCAATTGATAGGATAGTGGCTGGTATGGAAGGAACAGTCATGACTGATGGCAAGAGCAAGAGTCTGGTGGCATATCACGAAGTTGGACATGCCATCTGTGG..................................................................................................................................................................................AACTCTCACTCCAGGGCATGATGCTGTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E556326" ref_strand="+" ref_description="SGN-E556326 	[cTSD-3-C13]">
      <seq>aaatctggctttcccacttattttgattggtggtcttttcctgctatcaaggcggtctaacggaggaatgggaggtcctggtgggcctggaaacccactagcatttggtcaatcaaaggctaagttccaaatggagccaaacactggtgtgacatttgatgatgttgctggtgtagatgaagcaaaacaagattttatggaggtcgtagaatttttgaagaaacctgagagatttactgcagtaggggctcgtattccaaaaggtgttcttcttgttggtcctcctggtactgggaaaaccttgctagcaaaggcaattgctggtgaagcgggtgttccatttttctcaatttcaggttcagaattcgttgagatgtttgttggtgttggagcctctcgagtccgtgatcttttcaagaaggccaaggaaaatgctccttgcattgtatttgttgatgaaattgatgctgttgggcggcaaagagggactggaattggaggaggaaatgatgaaagggaacagaccctgaaccaactattgactgaaatggatggtttcgaaggaaatactggtataatagttgttgcggcaaccaatcgtgcagatattcttgactctgctttgctgaggccaggacgatttgatagacaagtatccgtggatgtcccagacatcaagggaagaacagagatcttaaaggttcatgccggcaacaagaagtttgattcagatgtgtctcttgaagttattgccatgaggacaccgggtttcagtggagcagatcttgctaacctcttaaatgaagcagccattcttgcaggtcgacgtggtaagacagcaatcgcatccaaagagattgatgatttcattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="29601" stop="28054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29301" g_stop="28650" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28649" i_stop="28576" i_length="74">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28575" g_stop="28354" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="874" r_length="222" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E556326" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29301" e_stop="28650"/>
          <exon e_start="28575" e_stop="28354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAGGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAAGTAAGCATCTGTCCTTGCCTCCGTTATTTAACTGTGACTTTTGCAAGAAACTAAAATTTACCGCTCTTATGTAGGTATCCGTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTCAATTGAT</genome_strand>
        <mrna_strand>AAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAGGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAA..........................................................................GTATCCGTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTTCATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E348467" ref_strand="+" ref_description="SGN-E348467 	[cTOF-30-A12]">
      <seq>ctggctttcccacttattttgattggtggtcttttcctgctatcaaggcggtctaacggaggaatgggaggtcctggtgggcctggaaacccactagcatttggtcaatcaaaggctaagttccaaatggagccaaacactggtgtgacatttgatgatgttgctggtgtagatgaagcaaaacaagattttatggaggtcgtagaatttttgaagaaacctgagagatttactgcagtaggggctcgtattccaaaaggtgttcttcttgttggtcctcctggtactgggaaaaccttgctagcaaaggcaattgctggtgaagcgggtgttccatttttctcaatttcaggttcagaattcgttgagatgtttgttggtgttggagcctctcgagtccgtgatcttttcaagaaggccaaggaaaatgctccttgcattgtatttgttgatgaaattgatgctgttgggcggcaaagagggactggaattggaggaggaaatgatgaaagggaacagaccctgaaccaactattgactgaaatggatggtttcgaaggaaatactggtataatagttgttgcggcaaccaatcgtgcagatattcttgactctgctttgctgaggccagnacgatttgatagacaagtatccgntggatgtcccagacatcaagggaagaacagagatcttaaaggttcatgccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="29597" stop="28217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29297" g_stop="28650" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28649" i_stop="28576" i_length="74">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28575" g_stop="28517" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="708" r_length="60" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E348467" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29297" e_stop="28650"/>
          <exon e_start="28575" e_stop="28517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAGGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAAGTAAGCATCTGTCCTTGCCTCCGTTATTTAACTGTGACTTTTGCAAGAAACTAAAATTTACCGCTCTTATGTAGGTATCCG-TGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGG</genome_strand>
        <mrna_strand>CTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAGGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGNACGATTTGATAGACAA..........................................................................GTATCCGNTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E291080" ref_strand="+" ref_description="SGN-E291080 	[cLET-8-O5]">
      <seq>ccaaatggagccaaacactggtgtgacatttgatgatgttgctggtgtagatgaagcaaaacaagattttatggaggtcgtagaatttttgaagaaacctgagagatttactgcagtaggggctcgtattccaaaaggtgttcttcttgttggtcctcctggtactgggaaaaccttgctagcaaaggcaattgctggtgaagcgggtgttccatttttctcaatttcaggttcagaattcgttgagatgtttgttggtgttggagcctctcgagtccgtgatcttttcaagaaggccaaggaaaatgctccttgcattgtatttgttgatgaaattgatgctgttgggcggcgaagagggactggaattggaggaggaaatgatgaaagggaacagaccctgaaccaactattgactgaaatggatggtttcgaaggaaatactggtataatagttgttgcggcaaccaatcgtgcagatattcttgactctgctttgctgaggccaggacgatttgatagacaagtatccgtggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="29475" stop="28342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29175" g_stop="28650" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28649" i_stop="28576" i_length="74">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28575" g_stop="28563" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="539" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E291080" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29175" e_stop="28650"/>
          <exon e_start="28575" e_stop="28563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAGGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAAGTAAGCATCTGTCCTTGCCTCCGTTATTTAACTGTGACTTTTGCAAGAAACTAAAATTTACCGCTCTTATGTAGGTATCCGTGGATG</genome_strand>
        <mrna_strand>CCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAGGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCGAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAA..........................................................................GTATCCGTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E329863" ref_strand="+" ref_description="SGN-E329863 	[cTOD-3-D10]">
      <seq>ttcaacttgattggaaatctgggggtccgagttattttgattggtggtcttttcctgctatcaaggcggtctaacggaggaatgggaggtcctggtgggcctggaaacccactagcatttggtcaatcaaaggctaagttccaaatggagccaaacactggtgtgacatttgatgatgttgctggtgtagatgaagcaaaacaagattttatggaggtcgtagaatttttgaagaaacctgagagatttactgcagtaggggctcgtattccaaaaggtgttcttcttgttggtcctcctggtactgggaaaaccttgctagcaaaggcaattgctggtgaagcgggtgttccatttttctcaatttcaagttcagaattcgttgagatgtttgttggtgttggagcctctcaagtccgtgatcttttcaagaaggccaaagaaaatgctccttgcattgcatttgttgatgaaattgatgctgttgggcggcaaagagggactggaattggaggaggaaatgatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="29615" stop="28487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29315" g_stop="28787" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E329863" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29315" e_stop="28787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAGGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAA</genome_strand>
        <mrna_strand>TTCAACTTGATTGGAAATCTGGGGGTCCGAGTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAAGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCTCTCAAGTCCGTGATCTTTTCAAGAAGGCCAAAGAAAATGCTCCTTGCATTGCATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E310316" ref_strand="+" ref_description="SGN-E310316 	[cTOA-1-G1]">
      <seq>ttaaattattgcttggaaatgttgggcttggagtgcctgctttgttaggtaatgggaaagcctatgctgatgagcaaggtgtttctaactcaaggatgtcttattctagatttttggagtatctggacaaggacagggtgcaaaaagtagatctgtttgaaaatggaaccatagctattgtagaagctgtatctccagaattggggaaccgagtgcaaagagttagggtacaactacctggactcagccaggaactccttcaaaagttccgggaaaagaacattgatttcgctgctcacaatgctcaagaggactcaagttctctcatattcaacttgattggaaatctggctttcccacttattttgattggtggtcttttcctgctatcaaggcggtctaacggaggaatgggaggtcctggtgggcctggaaacccactagcatttggtcaatcaaaggctaagttccaaatggagccaaacactggtgtgacatttgatgatgttgctggtgtagatgaagcaaaacaagattttatggaggtcgtagaatttttgaagaaacctgagagatttactgcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="29944" stop="28758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29644" g_stop="29058" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E310316" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29644" e_stop="29058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATTATTGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTA</genome_strand>
        <mrna_strand>TTAAATTATTGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAAGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E249805" ref_strand="+" ref_description="SGN-E249805 	[cLEF-57-H16]">
      <seq>tgggcttggagtgcctgctttgttaggtaatgggaaagcctatgctgatgagcaaggtgtttctaactcaaggatgtcttattctagatttttggagtatctggacaaggacagggtgcaaaaagtagatctgtttgaaaatggaaccatagctattgtagaagctgtatctccagaattggggaaccgagtgcaaagagttagggtacaactacctggactcagccaggaactccttcaaaagttccgggaaaagaacattgatttcgctgctcacaatgctcaagaggactcaggttctctcatattcaacttgattggaaatctggctttcccacttattttgattggtggtcttttcctgctatcaaggcggtctaacggaggaatgggaggtcctggtgggcctggaaacccactagcatttggtcaatcaaaggctaagttccaaatggagccaaacactggtgtgacatttgatgatgttgctggtgtagatgaagcaaaacaagattttatggaggtcgtagaatttttgaagaaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="29922" stop="28775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29622" g_stop="29075" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E249805" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29622" e_stop="29075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTG</genome_strand>
        <mrna_strand>TGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E294524" ref_strand="+" ref_description="SGN-E294524 	[cLET-22-C22]">
      <seq>ttattgcttggaaatgttgggcttggagtgcctgctttgttaggtaatgggaaagcctatgctgatgagcaaggtgtttctaactcaaggatgtcttattctagatttttggagtatctggacaaggacagggtgcaaaaagtagatctgtttgaaaatggaaccatagctattgtagaagctgtatctccagaattggggaaccgagtgcaaagagttagggtacaactacctggactcagccaggaactccttcaaaagttccgggaaaagaacattgatttcgctgctcacaatgctcaagaggactcaggttctctcatattcaacttgattggaaatctggctttcccacttattttgattggtggtcttttcctgctatcaaggcggtctaacggaggaatgggaggtcctggtgggcctggaaacccactagcatttggtcaatcaaaggctaagttccaaatggagccaaacactggtgtgacatttgatgatgttgctggtgtagatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="29939" stop="28820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29639" g_stop="29120" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E294524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29639" e_stop="29120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAG</genome_strand>
        <mrna_strand>TTATTGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E332340" ref_strand="+" ref_description="SGN-E332340 	[cTOD-17-F16]">
      <seq>tttatcaggttcttgcttcttttctgagcgtatcaacatggcgacttcatcagtatgcatagcaggaaatgatttgtccacccatagaacacagaaagtttttaggaaggagatctatggcagaaaaattttgtactcctcaaatcttccatcatctaggaaaacatcaagagtagttgtaaaagcatcccttcagcaagggccacatgaaggaagaagaggctttcttaaattattgcttggaaatgttgggcttggagtgcctgctttgttaggtaatgggaaagcctatgctgatgagcaaggtgtttctaactcaaggatgtcttattctagatttttggagtatctggacaaggacagggtgcaaaaagtagatctgtttgaaaatggaaccatagctattgtagaagctgtatctccagaattggggaaccgagtgcaaagagttagggtacaactacctggactcagccaggaactccttcaaaagttccgggaaaagaacattgatttcgctgctcacaatgctcaagaggactcaggttctctcatattcaacttgattggaaatctggctttcccacttattttgattggtggtcttttcctgctatcaaggcggtctaacggaggaatgggaggtcctggtgggcctggaaaccactagcatttggtcaatcaagctaagtccaaatggagccaacactggtgtgacatttgatgatgttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="30170" stop="28832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29863" g_stop="29132" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="735" r_length="727" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E332340" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29863" e_stop="29132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGCTTCTTTTCTGAGCGTATCAACATGGCGACTTCATCAGTATGCATAGCAGGAAATGATTTGTCCACCCATAGAACACAGAAAGTTTTTAGGAAGGAGATCTATGGCAGAAAAATTTTGTACTCCTCAAATCTTCCATCATCTAGGAAAACATCAAGAGTAGTTGTAAAAGCATCCCTTCAGCAAGGGCCACATGAAGGAAGAAGAGGCTTTCTTAAATTATTGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTG</genome_strand>
        <mrna_strand>GTTCTTGCTTCTTTTCTGAGCGTATCAACATGGCGACTTCATCAGTATGCATAGCAGGAAATGATTTGTCCACCCATAGAACACAGAAAGTTTTTAGGAAGGAGATCTATGGCAGAAAAATTTTGTACTCCTCAAATCTTCCATCATCTAGGAAAACATCAAGAGTAGTTGTAAAAGCATCCCTTCAGCAAGGGCCACATGAAGGAAGAAGAGGCTTTCTTAAATTATTGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAA-CCACTAGCATTTGGTCAATC-AA-GCTAAG-TCCAAATGGAGCC-AACACTGGTGTGACATTTGATGATGTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E257821" ref_strand="+" ref_description="SGN-E257821 	[cLEG-39-E6]">
      <seq>tgcttggaaatgttgggcttggagtgcctgctttgttaggtaatgggaaagcctatgctgatgagcaaggtgtttctaactcaaggatgtcttattctagatttttggagtatctggacaaggacagggtgcaaaaagtagatctgtttgaaaatggaaccatagctattgtagaagctgtatctccagaattggggaaccgagtgcaaagagttagggtacaactacctggactcagccaggaactccttcaaaagttccgggaaaagaacattgatttcgctgctcacaatgctcaagaggactcaggttctctcatattcaacttgattggaaatctggctttcccacttattttgattggtggtcttttcctgctatcaaggcggtctaacggaggaatgggaggtcctggtgggcctggaaacccactagcatttggtcaatcaaaggctaagttccaaatggagccaaacactggtgtgacatttgatgatgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="29935" stop="28834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29635" g_stop="29134" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E257821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29635" e_stop="29134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGC</genome_strand>
        <mrna_strand>TGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E294687" ref_strand="+" ref_description="SGN-E294687 	[cLET-22-P19]">
      <seq>ggaaatgttgggcttggagtgcctgctttgttaggtaatgggaaagcctatgctgatgagcaaggtgtttctaactcaaggatgtcttattctagatttttggagtatctggacaaggacagggtgcaaaaagtagatctgtttgaaaatggaaccatagctattgtagaagctgtatctccagaattggggaaccgagtgcaaagagttagggtacaactacctggactcagccaggaactccttcaaaagttccgggaaaagaacattgatttcgctgctcacaatgctcaagaggactcaagttctctcatattcaacttgattggaaatctggctttcccacttattttgattggtggtcttttcctgctatcaaggcggtctaacggaggaatgggaggtcctggtgggcctggaaacccactagcatttggtcaatcaaaggctaagttccaaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="29930" stop="28867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29630" g_stop="29167" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E294687" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29630" e_stop="29167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGA</genome_strand>
        <mrna_strand>GGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAAGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E332211" ref_strand="+" ref_description="SGN-E332211 	[cTOD-17-C19]">
      <seq>ctctgtcaactttatcaggttcttgcttcttttctgagcgtatcaacatggcgacttcatcagtatgcatagcaggaaatgatttgtccacccatagaacacagaaagtttttaggaaggagatctatggcagaaaaattttgtactcctcaaatcttccatcatctaggaaaacatcaagagtagttgtaaaagcatcccttcagcaagggccacatgaaggaagaagaggctttcttaaattattgcttggaaatgttgggcttggagtgcctgctttgttaggtaatgggaaagcctatgctgatgagcaaggtgtttctaactcaaggatgtcttattctagatttttggagtatctggacaaggacagggtgcaaaaagtagatctgtttgaaaatggaaccatagctattgtagaagctgtatctccagaattggggaaccgagtgcaaagagttagggtacaactacctggactcagccaggaactccttcaaaagttccgggaaaagaacattgatttcgctgctcacnatgctcaagaggactcaggttctctcatattcaacttgattggaaatctggctttcccactatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="31268" stop="28978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30968" g_stop="30951" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30950" i_stop="29864" i_length="1087">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.540" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29863" g_stop="29277" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="605" r_length="587" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E332211" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30968" e_stop="30951"/>
          <exon e_start="29863" e_stop="29277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTCAACTTTATCAGGTACTTTCTCTTAACTCTTCTACTACTAACAGACTTGTATTTGAATGGTTTAGCTCTTAATTTGAAGTTACTAGCTGTACTTTTATGTTTGGCTCACAAGGTGTTTGTTATAATGCCTCAATGAATGATCCTTTACCTGTAGGCTGTAGTTGGCGTATGAAAAAGATATACCCACATCGAGATTTGGTTTAGTTTGCTCTTTTACCCTCCAACCCAACCCCCCAACACGCAAAAATTTGACTTGTTGGCGCGAATCTGGATTGGTCGGGGTTGAAGTGGGTACCGGATAGTGGGTGGGAAACCAAAAAGAACAGAGATTTGGCTTAGTTTCTTGAATTGGGGAAAAGGGGATTTTTTTTACTTTAAGGTTGGTTTTTTATTTGAATTTTTGACATAACAAAGCTTGTGTTTACTTGTCTCACTTTGATATCTTGGGTAATGATGAGGGAAGCGATACCCAGGTGCCAAGCTAACATTTTTCTAGTGCAAATGTTGTAATTGGAAATAACTGAAGGTTTAAAATGAGTAATTTTTACGTTAGGATGGGTCTCCTTCACTCTCTTGCAAATGGCACAATTTGAAATTGAAAGAAGCATTCGGAATCATGTCTCTTTTTAATTAGTCTATATACATGGTAAACCAATAGAGTACAGATGTGTGTAAATATCGTTACGTATGCTGGCAGTTCCTTATTAGTTTTTCGTGTATGAATAACCCATACGTATATCAGATCTGTTTGATACAGGTATTCTAAAAGTAAATCATCCATGTAGTATAGGTTAACTTCAAAAATCAATTGTGAAGCATTTACATGCCATCAATAAAGGGAAACTAAGAGTTCTTTTTGATAGATGAAATAAGCTTAAAATGGGTTGCGGAATTGTCATCATTGAGATCAGTGCTACTTGAGATGAAGAATACAAAAGGGAAAAAGTTGTCATCCCAGTATTTTCCCAATAAATTTAAAAGTGATTCAAATGGGCACGATGCCAGTCCTTTGCCTGATTGATTTATTTCCTTGCAACTTGCAGTTATCAACTTTATCATTTCTCCTTTGCAGAATTATCATTAGAAGTGAACTGTGCAGGTTCTTGCTTCTTTTCTGAGCGTATCAACATGGCGACTTCATCAGTATGCATAGCAGGAAATGATTTGTCCACCCATAGAACACAGAAAGTTTTTAGGAAGGAGATCTATGGCAGAAAAATTTTGTACTCCTCAAATCTTCCATCATCTAGGAAAACATCAAGAGTAGTTGTAAAAGCATCCCTTCAGCAAGGGCCACATGAAGGAAGAAGAGGCTTTCTTAAATTATTGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTG</genome_strand>
        <mrna_strand>CTCTGTCAACTTTATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTCTTTTCTGAGCGTATCAACATGGCGACTTCATCAGTATGCATAGCAGGAAATGATTTGTCCACCCATAGAACACAGAAAGTTTTTAGGAAGGAGATCTATGGCAGAAAAATTTTGTACTCCTCAAATCTTCCATCATCTAGGAAAACATCAAGAGTAGTTGTAAAAGCATCCCTTCAGCAAGGGCCACATGAAGGAAGAAGAGGCTTTCTTAAATTATTGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACNATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E340246" ref_strand="+" ref_description="SGN-E340246 	[cTOF-2-P7]">
      <seq>aacacagaaaaatttacaaacatgaacagcaacaggcctcataattttacacaacatggaaattggagcaatggagagtggcatgatcctaattcacatggacctgagtacatatggcaacctattatccctcgtcctccgcctccacgagatatccctcagaatcctagacgtgtcgttcatgatccaccgttgcaagtaacagagagaccatttctagtacctactggtgcaacaagttatccatatccaggccaaccacgacgtaggctaactcatcctcctgttcgcgttctactccataacgatgatgtaccaagacatggatcatatcagagaccaagccaacttccattcgattctcctcctcctccgtggtttatgcagagcaatgaaacgtcgaggaatgaatcaaaattgagcccaaatgagcaaaaggcagccttaaataaactcaagaaagaaatctacaatcctgtacaagcaaaagtggcaaaacaagtgaacctttactttagaggcttgaacaatactaccaccaacgaatcgatcaaggacaaagatgaggatggtaaaagatgttcgatttgcttggaagatttcgagcctaaagagattgtgacagtcacaccatgtagtcatatgttccacgaagactgcatcgttccatgggtgacaaatcatggctcgtgccctgtctgtcgatttgctatctgtngaaagatgaaacaggacacaacagactcatcgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="33893" stop="32374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33593" g_stop="33432" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33431" i_stop="33341" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33340" g_stop="33264" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="239" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33263" i_stop="33188" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33187" g_stop="32674" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="753" r_length="514" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E340246" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33593" e_stop="33432"/>
          <exon e_start="33340" e_stop="33264"/>
          <exon e_start="33187" e_stop="32674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAGAAAAATTTACAAACATGAACAGCAACAGGCCTCATAATTTTACACAACATGGAAATTGGAGCAATGGAGAGTGGCATGATCCTAATTCACATGGACCTGAGTACATATGGCAACCTATTATCCCTCGTCCTCCGCCTCCACGAGATATCCCTCAGGTATTCTCAACATGATACATAGATATACATGTTAGTTCAGTACTGAAATCTTTAAATCATGAATCCGACTCTAAAATTTTGTGTTGCACAGAATCCTAGACGTGTCGTTCATGATCCACCGTTGCAAGTAACAGAGAGACCATTTCTAGTACCTACTGGTGCAACAAGGTAAGCATTTCTTCTATCTTTTTTTCTTTTTTTTTGTCAGAATCCAAGATTTGATCATTTCAAGAACTACTTGCAGTTATCCATATCCAGGCCAACCACGACGTAGGCTAACTCATCCTCCTGTTCGCGTTCTACTCCATAACGATGATGTACCAAGACATGGATCATATCAGAGACCAAGCCAACTTCCATTCGATTCTCCTCCTCCTCCGTGGTTTATGCAGAGCAATGAAACGTCGAGGAATGAATCAAAATTGAGCCCAAATGAGCAAAAGGCAGCCTTAAATAAACTCAAGAAAGAAATCTACAATCCTGTACAAGCAAAAGTGGCAAAACAAGTGAACCTTTACTTTAGAGGCTTGAACAATACTACCACCAACGAATCGATCAAGGACAAAGATGAGGATGGTAAAAGATGTTCGATTTGCTTGGAAGATTTCGAGCCTAAAGAGATTGTGACAGTCACACCATGTAGTCATATGTTCCACGAAGACTGCATCGTTCCATGGGTGACAAATCATGGCTCGTGCCCTGTCTGTCGATTTGCTATCTGTGAAAGAATGAAACAGGACACAACAGACTCATCGACG</genome_strand>
        <mrna_strand>AACACAGAAAAATTTACAAACATGAACAGCAACAGGCCTCATAATTTTACACAACATGGAAATTGGAGCAATGGAGAGTGGCATGATCCTAATTCACATGGACCTGAGTACATATGGCAACCTATTATCCCTCGTCCTCCGCCTCCACGAGATATCCCTCAG...........................................................................................AATCCTAGACGTGTCGTTCATGATCCACCGTTGCAAGTAACAGAGAGACCATTTCTAGTACCTACTGGTGCAACAAG............................................................................TTATCCATATCCAGGCCAACCACGACGTAGGCTAACTCATCCTCCTGTTCGCGTTCTACTCCATAACGATGATGTACCAAGACATGGATCATATCAGAGACCAAGCCAACTTCCATTCGATTCTCCTCCTCCTCCGTGGTTTATGCAGAGCAATGAAACGTCGAGGAATGAATCAAAATTGAGCCCAAATGAGCAAAAGGCAGCCTTAAATAAACTCAAGAAAGAAATCTACAATCCTGTACAAGCAAAAGTGGCAAAACAAGTGAACCTTTACTTTAGAGGCTTGAACAATACTACCACCAACGAATCGATCAAGGACAAAGATGAGGATGGTAAAAGATGTTCGATTTGCTTGGAAGATTTCGAGCCTAAAGAGATTGTGACAGTCACACCATGTAGTCATATGTTCCACGAAGACTGCATCGTTCCATGGGTGACAAATCATGGCTCGTGCCCTGTCTGTCGATTTGCTATCTGTNGAAAGATGAAACAGGACACAACAGACTCATCGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E308049" ref_strand="-" ref_description="SGN-E308049 	[cLEY-14-F13]">
      <seq>caactttattgttcggatttaggttctggatccctgtcagcattttgaacttttgggccattcctcttcaagctcgtgttgcattcatgtctatggcctctatattctggaatttctgtttgtcagcaactatgagcaagtaactaccgtccaaaggattagctgggaagagcaggatcccgcaactgatataaccgcctatcaagacagagaaaatgatgtctggaggcaacagttgaaaccattctgattttccaaaagtggcttgcaccaggttctacagtgcctcagctcgcactaactacatatgatttgtttagaatatagtttcctttagtttcctagtgctataacgaaagacatatgtttggcttgttcgaccaattcttccgttgatttgctttcttttgtctggtttttggcattcttttccctgtctacacaatttataaacaagtgctgctacattatatatacgaaatcatcatgttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="35970" stop="11949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35760" g_stop="35746" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35745" i_stop="35658" i_length="88">
            <donor d_prob="0.956" d_score="0.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35657" g_stop="35618" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="55" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35617" i_stop="35406" i_length="212">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35405" g_stop="35286" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="175" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35285" i_stop="35207" i_length="79">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35206" g_stop="34888" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="494" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34887" i_stop="34567" i_length="321">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34566" g_stop="34561" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="500" r_length="6" r_score="0.833"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34560" i_stop="34176" i_length="385">
            <donor d_prob="0.535" d_score="0.00"/>
            <acceptor a_prob="0.911" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34175" g_stop="34160" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="516" r_length="16" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E308049" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308049" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35760" e_stop="35746"/>
          <exon e_start="35657" e_stop="35618"/>
          <exon e_start="35405" e_stop="35286"/>
          <exon e_start="35206" e_stop="34888"/>
          <exon e_start="34566" e_stop="34561"/>
          <exon e_start="34175" e_stop="34160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTATTGTTCGGTAAGCACTTCCATATGACATACCTTTGCCGGTTGCTTTAACTCCTCCTCCCTAGTGAAGTTTGATTTCATCCTTCATTCTCTTTCAGGATTTAGGTTCTGGATCCCTGTCAGCATTTTGAACTTTTGGTATGTCTTTTACTACTCCTTAGCCCCTTCCCCAACCTCATCCCAAAATATGGACAGATATAAAACAAAAACTTCTCATAATCTCTGTTAGTCTTGTCGTAATGGAGATCTTCTCATTCTCGTAAAAATGTTTTTCCTGAGATCATAGATGTTATTTTTTCTGAGTCTTTAGTATAATGAAATATGACAACTTCTGTGTTGAAAAATGATAGGGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCTGGAATTTCTGTTTGTCAGCAACTATGAGCAAGTAACTACCGTCCAAAGGATTAGCTGGGAAGAGCAGGTTCGTGCACACTCCTAGTCCAGTATTTGAGTTTTAGTATATCTCATGTCACGTATTAATATTAATCTGCTAATTTTAGGATCCCGCAACTGATATAACCGCCTATCAAGACAGAGAAAATGATGTCTGGAGGCAACAGTTGAAACCATTCTGATTTTCCAAAAGTGGCTTGCACCAGGTTCTACAGTGCCTCAGCTCGCACTAACTACATATGATTTGTTTAGAATATAGTTTCCTTTAGTTTCCTAGTGCTATAACGAAAGACATATGTTTGGCTTGTTCGACCAATTCTTCCGTTGATTTGCTTTCTTTTGTCTGGTTTTTGGCATTCTTTTCCCTGTCTACACAATTTATAAACAAGTGCTGCTACATTATATATACGAAATCATCATGTTAAAATTCTTGTGTTGGTAGAGTGTGTTATTATTATATCTTTGATAAGCATGATGTCAAAGTCATATGTATCGGTTACGACTCAATTTTAAACTAGTTGAGCTCGACTATGTGAATCCTCCATGCCTTCCACTCTCCTCTAGCTTCCGTTCTTTAGAATTTGATTCCTTTCTCACTTATGACGGTTCTGCTTCTGCAATTCCAAATGATCGAAACTGTGTAAAAACGAGTAGACAGTGAAAGACAGGAACTGTCATCCGTTGATCTTGCTGCACTGGAAAGTCACTTAAGGGTGTGTTTGGTATGGAGGAAAATGGAACATGCAGAAATAAGTTGGTTTCTTATTTATTTTTCTGGTGTTTGCCTCCGTCCATCTTTAATTGTCTAATATACTCTTTTGGGATGTACAATCATATTTGTCAAAATTTATAAACATAATTTATCATTTTGTGTCTACTTTACTATTGTCCATTTTTGGCAACACTTGACATGTTTAAGACCACAAAATTAAAGGGCATTTTGTTATATTTGGCATAACTTTCATTTAGAACCACAAGAATTGAAAGTCTTATTTTTTTTTTCTTAAAATTCCGTTCCAAGTCAAACTAGGTCATTTTTTTTTAAACGGAGGGAGTAGTTAATAAGGGTGAATTAGGAACTAGGTGATAAACTATTCATTGATTTTTCATACTCCCTCCGTCCACAAATGTTTGGCAGGTATACTAAAAATAGA</genome_strand>
        <mrna_strand>CAACTTTATTGTTCG........................................................................................GATTTAGGTTCTGGATCCCTGTCAGCATTTTGAACTTTTG....................................................................................................................................................................................................................GGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCTGGAATTTCTGTTTGTCAGCAACTATGAGCAAGTAACTACCGTCCAAAGGATTAGCTGGGAAGAGCAG...............................................................................GATCCCGCAACTGATATAACCGCCTATCAAGACAGAGAAAATGATGTCTGGAGGCAACAGTTGAAACCATTCTGATTTTCCAAAAGTGGCTTGCACCAGGTTCTACAGTGCCTCAGCTCGCACTAACTACATATGATTTGTTTAGAATATAGTTTCCTTTAGTTTCCTAGTGCTATAACGAAAGACATATGTTTGGCTTGTTCGACCAATTCTTCCGTTGATTTGCTTTCTTTTGTCTGGTTTTTGGCATTCTTTTCCCTGTCTACACAATTTATAAACAAGTGCTGCTACATTATATATACGAAATCATCATGTTAAA.................................................................................................................................................................................................................................................................................................................................AAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E294915" ref_strand="+" ref_description="SGN-E294915 	[cLET-17-M3]">
      <seq>aacttttgggccattcctcttcaagctcgtgttgcattcatgtctatggcctctatattctggaatttctgtttgtcagcaactatgagcaagtaactaccgtccaaaggattagctgggaagagcaggatcccgcaactgatataaccgcctatcaagacagagaaaatgatgtctggaggcaacagttgaaaccattctgattttccaaaagtggcttgcaccaggttctacagtgcctcagctcgcactaactacatatgatttgtttagaatatagtttcctttagtttcctagtgctataacgaaagacatatgtttggcttgttcgaccaattcttccgttgatttgctttcttttgtctggtttttggcattcttttccctgtctacacaatttataaacaagtgctgctacattatatatacgaaatcatcatgttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="35708" stop="34587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35625" g_stop="35618" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35617" i_stop="35406" i_length="212">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35405" g_stop="35286" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="128" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35285" i_stop="35207" i_length="79">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35206" g_stop="34888" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="447" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="459"/>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E294915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35625" e_stop="35618"/>
          <exon e_start="35405" e_stop="35286"/>
          <exon e_start="35206" e_stop="34888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTGGTATGTCTTTTACTACTCCTTAGCCCCTTCCCCAACCTCATCCCAAAATATGGACAGATATAAAACAAAAACTTCTCATAATCTCTGTTAGTCTTGTCGTAATGGAGATCTTCTCATTCTCGTAAAAATGTTTTTCCTGAGATCATAGATGTTATTTTTTCTGAGTCTTTAGTATAATGAAATATGACAACTTCTGTGTTGAAAAATGATAGGGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCTGGAATTTCTGTTTGTCAGCAACTATGAGCAAGTAACTACCGTCCAAAGGATTAGCTGGGAAGAGCAGGTTCGTGCACACTCCTAGTCCAGTATTTGAGTTTTAGTATATCTCATGTCACGTATTAATATTAATCTGCTAATTTTAGGATCCCGCAACTGATATAACCGCCTATCAAGACAGAGAAAATGATGTCTGGAGGCAACAGTTGAAACCATTCTGATTTTCCAAAAGTGGCTTGCACCAGGTTCTACAGTGCCTCAGCTCGCACTAACTACATATGATTTGTTTAGAATATAGTTTCCTTTAGTTTCCTAGTGCTATAACGAAAGACATATGTTTGGCTTGTTCGACCAATTCTTCCGTTGATTTGCTTTCTTTTGTCTGGTTTTTGGCATTCTTTTCCCTGTCTACACAATTTATAAACAAGTGCTGCTACATTATATATACGAAATCATCATGTTAAA</genome_strand>
        <mrna_strand>AACTTTTG....................................................................................................................................................................................................................GGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCTGGAATTTCTGTTTGTCAGCAACTATGAGCAAGTAACTACCGTCCAAAGGATTAGCTGGGAAGAGCAG...............................................................................GATCCCGCAACTGATATAACCGCCTATCAAGACAGAGAAAATGATGTCTGGAGGCAACAGTTGAAACCATTCTGATTTTCCAAAAGTGGCTTGCACCAGGTTCTACAGTGCCTCAGCTCGCACTAACTACATATGATTTGTTTAGAATATAGTTTCCTTTAGTTTCCTAGTGCTATAACGAAAGACATATGTTTGGCTTGTTCGACCAATTCTTCCGTTGATTTGCTTTCTTTTGTCTGGTTTTTGGCATTCTTTTCCCTGTCTACACAATTTATAAACAAGTGCTGCTACATTATATATACGAAATCATCATGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E294916" ref_strand="+" ref_description="SGN-E294916 	[cLET-17-M3]">
      <seq>aacttttgggccattcctcttcaagctcgtgttgcattcatgtctatggcctctatattctggaatttctgtttgtcagcaactatgagcaagtaactaccgtccaaaggattagctgggaagagcaggatcccgcaactgatataaccgcctatcaagacagagaaaatgatgtctggaggcaacagttgaaaccattctgattttccaaaagtggcttgcaccaggttctacagtgcctcagctcgcactaactacatatgatttgtttagaatatagtttcctttagtttcctagtgctataacgaaagacatatgtttggcttgttcgaccaattcttccgttgatttgctttcttttgtctggtttttggcattcttttccctgtctacacaatttataaacaagtgctgctacattatatatacgaaatcatcatgttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="35708" stop="34587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35625" g_stop="35618" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35617" i_stop="35406" i_length="212">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35405" g_stop="35286" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="128" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35285" i_stop="35207" i_length="79">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35206" g_stop="34888" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="447" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="459"/>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E294916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35625" e_stop="35618"/>
          <exon e_start="35405" e_stop="35286"/>
          <exon e_start="35206" e_stop="34888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTGGTATGTCTTTTACTACTCCTTAGCCCCTTCCCCAACCTCATCCCAAAATATGGACAGATATAAAACAAAAACTTCTCATAATCTCTGTTAGTCTTGTCGTAATGGAGATCTTCTCATTCTCGTAAAAATGTTTTTCCTGAGATCATAGATGTTATTTTTTCTGAGTCTTTAGTATAATGAAATATGACAACTTCTGTGTTGAAAAATGATAGGGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCTGGAATTTCTGTTTGTCAGCAACTATGAGCAAGTAACTACCGTCCAAAGGATTAGCTGGGAAGAGCAGGTTCGTGCACACTCCTAGTCCAGTATTTGAGTTTTAGTATATCTCATGTCACGTATTAATATTAATCTGCTAATTTTAGGATCCCGCAACTGATATAACCGCCTATCAAGACAGAGAAAATGATGTCTGGAGGCAACAGTTGAAACCATTCTGATTTTCCAAAAGTGGCTTGCACCAGGTTCTACAGTGCCTCAGCTCGCACTAACTACATATGATTTGTTTAGAATATAGTTTCCTTTAGTTTCCTAGTGCTATAACGAAAGACATATGTTTGGCTTGTTCGACCAATTCTTCCGTTGATTTGCTTTCTTTTGTCTGGTTTTTGGCATTCTTTTCCCTGTCTACACAATTTATAAACAAGTGCTGCTACATTATATATACGAAATCATCATGTTAAA</genome_strand>
        <mrna_strand>AACTTTTG....................................................................................................................................................................................................................GGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCTGGAATTTCTGTTTGTCAGCAACTATGAGCAAGTAACTACCGTCCAAAGGATTAGCTGGGAAGAGCAG...............................................................................GATCCCGCAACTGATATAACCGCCTATCAAGACAGAGAAAATGATGTCTGGAGGCAACAGTTGAAACCATTCTGATTTTCCAAAAGTGGCTTGCACCAGGTTCTACAGTGCCTCAGCTCGCACTAACTACATATGATTTGTTTAGAATATAGTTTCCTTTAGTTTCCTAGTGCTATAACGAAAGACATATGTTTGGCTTGTTCGACCAATTCTTCCGTTGATTTGCTTTCTTTTGTCTGGTTTTTGGCATTCTTTTCCCTGTCTACACAATTTATAAACAAGTGCTGCTACATTATATATACGAAATCATCATGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E229655" ref_strand="-" ref_description="SGN-E229655 	[cLEL-4-M21]">
      <seq>taaccgcctatcaaggcagagaaaatgatgtctggaggcaacagttgaaaccattctgattttccaaaagtggcttgcaccaggttctacagtgcctcagctcgcactaactacatatgatttgtttagaatatagtttcctttagtttcctagtgctataacgaaagacatatgtttggcttgttcgaccaattcttccgttgatttgctttcttttgtctggtttttggcattcttttccctgtctacacaatttataaacaagtgctgctacattatatatacgaaatcatcatgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="35490" stop="34587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35190" g_stop="34888" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="304" polyA_stop="317"/>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E229655" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229655" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35190" e_stop="34888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCGCCTATCAAGACAGAGAAAATGATGTCTGGAGGCAACAGTTGAAACCATTCTGATTTTCCAAAAGTGGCTTGCACCAGGTTCTACAGTGCCTCAGCTCGCACTAACTACATATGATTTGTTTAGAATATAGTTTCCTTTAGTTTCCTAGTGCTATAACGAAAGACATATGTTTGGCTTGTTCGACCAATTCTTCCGTTGATTTGCTTTCTTTTGTCTGGTTTTTGGCATTCTTTTCCCTGTCTACACAATTTATAAACAAGTGCTGCTACATTATATATACGAAATCATCATGTTAAA</genome_strand>
        <mrna_strand>TAACCGCCTATCAAGGCAGAGAAAATGATGTCTGGAGGCAACAGTTGAAACCATTCTGATTTTCCAAAAGTGGCTTGCACCAGGTTCTACAGTGCCTCAGCTCGCACTAACTACATATGATTTGTTTAGAATATAGTTTCCTTTAGTTTCCTAGTGCTATAACGAAAGACATATGTTTGGCTTGTTCGACCAATTCTTCCGTTGATTTGCTTTCTTTTGTCTGGTTTTTGGCATTCTTTTCCCTGTCTACACAATTTATAAACAAGTGCTGCTACATTATATATACGAAATCATCATGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E326830" ref_strand="+" ref_description="SGN-E326830 	[cTOC-25-G23]">
      <seq>gagaagagaggaacaaaaaaacaagaatgggttcattgagtggtggaaatggaagtatatggggaatgggatttttccattctcaagaatggaattctggaagaagaagaaggagaagtaatggtggaaaatcgtcaaattcggattcagtggatgcaaatggtggagctggttatcgttttcctctgaagcaagctatgacggctagctctcttgcacttagtggtgacaccattgctcagcttcgtgaccggtggctcaagaacaaagataatcttcctgatccatctcatcctaaggatatgattggtgcactcctatctgagcatgactggcttcggtcagtccggatggcttcatatggatttttgttatatggtcccggtacttatgcatggtactcatatcttgacagatgtatgcccaagcaaagcgtggagaatgtaatgatgaaggttttattaaaccaaatagtgctaggtccttctgtaatagctgttatctttgcatggaataatttatggctgggaaaactttcagaacttccaaacaagtatcagaaagatgcccttccaactttattgttcggatttaggttctggatccctgtcagcattttgaacttttgggccattcctcttncagctcgtgttgcattcatgtctatggcctctatattctggaatttctgtttgtcagcaactatgagcaagtaactaccgtccaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="39189" stop="35003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38889" g_stop="38591" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38590" i_stop="36158" i_length="2433">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36157" g_stop="36002" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="455" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36001" i_stop="35879" i_length="123">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35878" g_stop="35746" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="588" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35745" i_stop="35658" i_length="88">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35657" g_stop="35618" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="628" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35617" i_stop="35406" i_length="212">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35405" g_stop="35303" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="731" r_length="103" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E326830" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38889" e_stop="38591"/>
          <exon e_start="36157" e_stop="36002"/>
          <exon e_start="35878" e_stop="35746"/>
          <exon e_start="35657" e_stop="35618"/>
          <exon e_start="35405" e_stop="35303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAGAGGAACAAAAAAACAAGAATGGGTTCATTGAGTGGTGGAAATGGAAGTATATGGGGAATGGGATTTTTCCATTCTCAAGAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCAAATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAGGTTAATTTTCTAAAAAAGATTGGAATTTGGTGAAATTTAAGGTTACTTATCTTGTAAAGTAACCAAATTTATTGGCTTTTGGAGTTGTGGGGTTTTTTGAAATATTGGTATTTCTTGAAACCCCACTTGGAATTCTTGAACTCATTTTGGGAATTTGGGGAACTATATAAAGGTCATGTTTGGCAGTTGTGATAATGTGAATTGTCTGTTTGTTAGTTCATGACTTGGTAAATTTGATTGCTTTTGATTTTTTATCTAACAATGAGTTAGGTTGAGAAACTCAGAGTAGGACAGATGTGCCAAATTTGAATACTTGACAGTGAAGTGAATAGAAAGTAGAGAGAAGGTTGGTTACATGGTACGAGAAGTTTGAATAGGGTGAAATTTATGTATCAAGAGCAGTATGAAGAGCTGATTAATATTCCGTGGTAAAAGAATAATTTTTTTAAGCAATTTATGTCAATGTGATCATAGTAAACGCGGAAGAGTTCATTCTGGCATAATTGCTGTTCTTTGATAATCATATAAAGTAAGTATTCCAAACCAATAATGATGTATCAGTTTGAAACCGATATTTATGATCTTACGAGGTAATTCGTGGGATTCAAATGAAAATGATTGAAAAAGAGGTTTGCCGTCTAACGAAATTTATGGTCTCAGGTGTCATTAGAATGTAATTATTGTCTGCAGAGTGTATCTGTATTGCACATAGATTCTTGTTGCTGTCCAAAAGGTAGTTCATATTCAGGGATAAAGTATTACCTCGAGGTGGTCCTTTTGTGGAAGCATGAGTGTGATGCCTCCCTGTGCTTTCAAGAACAACCAAGCAAAGTGGGAGGCAGGAATTAACACTGTCCGAGTATGTGCCTACTTCCACATATTTTGTTTCAGCATATATTCTGTTCAGTTCCAGTGGACCAACTTATTCCTAATCAATAGGCTCATTAGGCCTGTCTTTTTTTTTGCCCCTAGTGTATGTGCTTTTGGCTCTTAGCTATCCATATGTGTACTTAACTATGTTTTTTTTATGTCTTCTCACCGTAGTTGTCTGTCTTGAAAGAGGTTACGTATCCTCATTCTCTGACTCTGTTATTGACTAGACTTACATGACCCAAGGAATAATTTCATATGGTATGTAATTTTACCTTAAGTAACAAAATTAAAAAGCTTAAGAAAAGATTGTTTCAGAGACAACTTTAGACTCCCTTCAGCTGGTGCTTTACCTGCTTTAATCTCTTTTCGAAGATTAGTGTCCTGTCTATCACTAGTCTCCTTTGAGGTTTTCAAAACAGTATCTGCTGAGAATTTCCGGTTTTGAAGAGCATCATGCTAAGAACATGTTTTCATAAAATAGTTTACATGCACTCTAATGGTTAATCTCTTTGGCACATAGTGTTTGTGATTTAACCAGTCACATGTACTATATATGTGTCCCTTCTGTTTCCCCCCTTATCAGTAACAACACTTAAATTTCTAATTAGGTTATAGCCATTGATCCTCTATAGCCATCACTCTTCCAGTGATTAACTTGTTCCATTATTATTGACCTGCCTGTGTCTATTAACTTATCCATGCGGAGATATACAATATCGCATGCTTCCATAAAGAGAAAAGAATAGCCACGCAAAAAGAAATTCTAGATTTATTGCTTGTATTTGTGCTGTTGACACTACATACAATTAGAAAAAAGGAAAGAAATTACTTGCTAATCAGCTTGTTCTTTTGTTCTTTTGTGCATGTTGGGACTAGGGGGGGTCTAGAGTTTGCATATCCTTTGTATTTGATTATTTTATTCTCAGAAGGGAGGAGTGGGGGTTAATTAGGAAGTACTCTCTTGTACTCCTACCAGAGAAGAAGCAAATGGAGAAATCTTCTCCCGAGTGGTGCCTAGTGCTGCCCTCATCTACAGACCAAGGAAAAGGTCAATATTCCATCCACCTTTAGCACCCTCTCAAGCTTCACAACAAACGTTCCTTGATTGATCACTACACCACAAGCCAACTCCATTGGCATATTGGCAACCTTACAATCACTTGATCTATATATATTATGTACTTGTCTTTCTGTCAATTTTTGTTACCAATCAACCCCTTTTGGGAAATTTCATATTCTTTATGAACTAATTAAAACGGTGATCATTGGATTTTCTGTTCTTAAATATTATATCCAGCTTTAGGAGTTGATGCTAGTTGTACACTGAATTGATTCTCACATTTTGGCAATAGCTTATCTATATGTTTGCTAATACATCTTAACAGCTAAAGATTTTGCATGTCTTATGGCGTACTCAAAGAAAAGAAGAAGATTTTGCATGTTGTCTGCTCTCTCATAAAATGGCTTCTCTTTGCTATCTGATTCACTGAATTAAGAATGTATCTTGGGAGTATTTACACACTAATCTGAATTTTGTATTTGACCAAAATCTTGTTTTAGGATATGATTGGTGCACTCCTATCTGAGCATGACTGGCTTCGGTCAGTCCGGATGGCTTCATATGGATTTTTGTTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCAAGCAAAGCGTGGAGAATGTAATGATGAAGGTAGTTATGCTTCTGAGAAGAACCTCTTTCATGATGAGCTTGACCTACCAATGAAGAAAGAACTACTTCTATGCAAGTTTGACCTGTCCATCTAACTAGTACCTTTAATACTCTTTGTTTCAGGTTTTATTAAACCAAATAGTGCTAGGTCCTTCTGTAATAGCTGTTATCTTTGCATGGAATAATTTATGGCTGGGAAAACTTTCAGAACTTCCAAACAAGTATCAGAAAGATGCCCTTCCAACTTTATTGTTCGGTAAGCACTTCCATATGACATACCTTTGCCGGTTGCTTTAACTCCTCCTCCCTAGTGAAGTTTGATTTCATCCTTCATTCTCTTTCAGGATTTAGGTTCTGGATCCCTGTCAGCATTTTGAACTTTTGGTATGTCTTTTACTACTCCTTAGCCCCTTCCCCAACCTCATCCCAAAATATGGACAGATATAAAACAAAAACTTCTCATAATCTCTGTTAGTCTTGTCGTAATGGAGATCTTCTCATTCTCGTAAAAATGTTTTTCCTGAGATCATAGATGTTATTTTTTCTGAGTCTTTAGTATAATGAAATATGACAACTTCTGTGTTGAAAAATGATAGGGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCTGGAATTTCTGTTTGTCAGCAACTATGAGCAAGTAACTACCGTCCAAAGGA</genome_strand>
        <mrna_strand>GAGAAGAGAGGAACAAAAAAACAAGAATGGGTTCATTGAGTGGTGGAAATGGAAGTATATGGGGAATGGGATTTTTCCATTCTCAAGAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCAAATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGATTGGTGCACTCCTATCTGAGCATGACTGGCTTCGGTCAGTCCGGATGGCTTCATATGGATTTTTGTTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCAAGCAAAGCGTGGAGAATGTAATGATGAAG...........................................................................................................................GTTTTATTAAACCAAATAGTGCTAGGTCCTTCTGTAATAGCTGTTATCTTTGCATGGAATAATTTATGGCTGGGAAAACTTTCAGAACTTCCAAACAAGTATCAGAAAGATGCCCTTCCAACTTTATTGTTCG........................................................................................GATTTAGGTTCTGGATCCCTGTCAGCATTTTGAACTTTTG....................................................................................................................................................................................................................GGCCATTCCTCTTNCAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCTGGAATTTCTGTTTGTCAGCAACTATGAGCAAGTAACTACCGTCCAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E343853" ref_strand="+" ref_description="SGN-E343853 	[cTOF-12-B11]">
      <seq>caaaaaaacaagatgggttcattgagtggtggaaatggaagtatatggggaatgggatttttccattctcaagaatggaattctggaagaagaagaaggagaagtaatggtggaaaatcgtcaaattcggattcagtggatgcaaatggtggagctggttatcgttttcctctgaagcaagctatgacggctagctctcttgcacttagtggtgacaccattgctcagcttcgtgaccggtggctcaagaacaaagataatcttcctgatccatctcatcctaaggatatgattggtgcactcctatctgagcatgactggcttcggtcagtccggatggcttcatatggatttttgttatatggtcccggtacttatgcatggtactcatatcttgacagatgtatgcccaagcaaagcgtggagaatgtaatgatgaaggttttattaaaccaaaatagtgctaggtccttctgtaatagctgttatctttgcatggaataatttatggctgggaaaactttcagaacttccaaacaagtatcagaaagatgcccttccaactttattgttcggatttaggttctggatccctgtcagcattttgaacttttgggccattcctcttcaagctcgtgttgcattcatgtctatggcctctatattctggaatttctgtttgtcagcaactatgagcaagtaactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="39176" stop="35013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38876" g_stop="38591" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38590" i_stop="36158" i_length="2433">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36157" g_stop="36002" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="441" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36001" i_stop="35879" i_length="123">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35878" g_stop="35746" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="575" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35745" i_stop="35658" i_length="88">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35657" g_stop="35618" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="615" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35617" i_stop="35406" i_length="212">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35405" g_stop="35313" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="708" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E343853" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38876" e_stop="38591"/>
          <exon e_start="36157" e_stop="36002"/>
          <exon e_start="35878" e_stop="35746"/>
          <exon e_start="35657" e_stop="35618"/>
          <exon e_start="35405" e_stop="35313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAACAAGAATGGGTTCATTGAGTGGTGGAAATGGAAGTATATGGGGAATGGGATTTTTCCATTCTCAAGAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCAAATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAGGTTAATTTTCTAAAAAAGATTGGAATTTGGTGAAATTTAAGGTTACTTATCTTGTAAAGTAACCAAATTTATTGGCTTTTGGAGTTGTGGGGTTTTTTGAAATATTGGTATTTCTTGAAACCCCACTTGGAATTCTTGAACTCATTTTGGGAATTTGGGGAACTATATAAAGGTCATGTTTGGCAGTTGTGATAATGTGAATTGTCTGTTTGTTAGTTCATGACTTGGTAAATTTGATTGCTTTTGATTTTTTATCTAACAATGAGTTAGGTTGAGAAACTCAGAGTAGGACAGATGTGCCAAATTTGAATACTTGACAGTGAAGTGAATAGAAAGTAGAGAGAAGGTTGGTTACATGGTACGAGAAGTTTGAATAGGGTGAAATTTATGTATCAAGAGCAGTATGAAGAGCTGATTAATATTCCGTGGTAAAAGAATAATTTTTTTAAGCAATTTATGTCAATGTGATCATAGTAAACGCGGAAGAGTTCATTCTGGCATAATTGCTGTTCTTTGATAATCATATAAAGTAAGTATTCCAAACCAATAATGATGTATCAGTTTGAAACCGATATTTATGATCTTACGAGGTAATTCGTGGGATTCAAATGAAAATGATTGAAAAAGAGGTTTGCCGTCTAACGAAATTTATGGTCTCAGGTGTCATTAGAATGTAATTATTGTCTGCAGAGTGTATCTGTATTGCACATAGATTCTTGTTGCTGTCCAAAAGGTAGTTCATATTCAGGGATAAAGTATTACCTCGAGGTGGTCCTTTTGTGGAAGCATGAGTGTGATGCCTCCCTGTGCTTTCAAGAACAACCAAGCAAAGTGGGAGGCAGGAATTAACACTGTCCGAGTATGTGCCTACTTCCACATATTTTGTTTCAGCATATATTCTGTTCAGTTCCAGTGGACCAACTTATTCCTAATCAATAGGCTCATTAGGCCTGTCTTTTTTTTTGCCCCTAGTGTATGTGCTTTTGGCTCTTAGCTATCCATATGTGTACTTAACTATGTTTTTTTTATGTCTTCTCACCGTAGTTGTCTGTCTTGAAAGAGGTTACGTATCCTCATTCTCTGACTCTGTTATTGACTAGACTTACATGACCCAAGGAATAATTTCATATGGTATGTAATTTTACCTTAAGTAACAAAATTAAAAAGCTTAAGAAAAGATTGTTTCAGAGACAACTTTAGACTCCCTTCAGCTGGTGCTTTACCTGCTTTAATCTCTTTTCGAAGATTAGTGTCCTGTCTATCACTAGTCTCCTTTGAGGTTTTCAAAACAGTATCTGCTGAGAATTTCCGGTTTTGAAGAGCATCATGCTAAGAACATGTTTTCATAAAATAGTTTACATGCACTCTAATGGTTAATCTCTTTGGCACATAGTGTTTGTGATTTAACCAGTCACATGTACTATATATGTGTCCCTTCTGTTTCCCCCCTTATCAGTAACAACACTTAAATTTCTAATTAGGTTATAGCCATTGATCCTCTATAGCCATCACTCTTCCAGTGATTAACTTGTTCCATTATTATTGACCTGCCTGTGTCTATTAACTTATCCATGCGGAGATATACAATATCGCATGCTTCCATAAAGAGAAAAGAATAGCCACGCAAAAAGAAATTCTAGATTTATTGCTTGTATTTGTGCTGTTGACACTACATACAATTAGAAAAAAGGAAAGAAATTACTTGCTAATCAGCTTGTTCTTTTGTTCTTTTGTGCATGTTGGGACTAGGGGGGGTCTAGAGTTTGCATATCCTTTGTATTTGATTATTTTATTCTCAGAAGGGAGGAGTGGGGGTTAATTAGGAAGTACTCTCTTGTACTCCTACCAGAGAAGAAGCAAATGGAGAAATCTTCTCCCGAGTGGTGCCTAGTGCTGCCCTCATCTACAGACCAAGGAAAAGGTCAATATTCCATCCACCTTTAGCACCCTCTCAAGCTTCACAACAAACGTTCCTTGATTGATCACTACACCACAAGCCAACTCCATTGGCATATTGGCAACCTTACAATCACTTGATCTATATATATTATGTACTTGTCTTTCTGTCAATTTTTGTTACCAATCAACCCCTTTTGGGAAATTTCATATTCTTTATGAACTAATTAAAACGGTGATCATTGGATTTTCTGTTCTTAAATATTATATCCAGCTTTAGGAGTTGATGCTAGTTGTACACTGAATTGATTCTCACATTTTGGCAATAGCTTATCTATATGTTTGCTAATACATCTTAACAGCTAAAGATTTTGCATGTCTTATGGCGTACTCAAAGAAAAGAAGAAGATTTTGCATGTTGTCTGCTCTCTCATAAAATGGCTTCTCTTTGCTATCTGATTCACTGAATTAAGAATGTATCTTGGGAGTATTTACACACTAATCTGAATTTTGTATTTGACCAAAATCTTGTTTTAGGATATGATTGGTGCACTCCTATCTGAGCATGACTGGCTTCGGTCAGTCCGGATGGCTTCATATGGATTTTTGTTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCAAGCAAAGCGTGGAGAATGTAATGATGAAGGTAGTTATGCTTCTGAGAAGAACCTCTTTCATGATGAGCTTGACCTACCAATGAAGAAAGAACTACTTCTATGCAAGTTTGACCTGTCCATCTAACTAGTACCTTTAATACTCTTTGTTTCAGGTTTTATTAAACC-AAATAGTGCTAGGTCCTTCTGTAATAGCTGTTATCTTTGCATGGAATAATTTATGGCTGGGAAAACTTTCAGAACTTCCAAACAAGTATCAGAAAGATGCCCTTCCAACTTTATTGTTCGGTAAGCACTTCCATATGACATACCTTTGCCGGTTGCTTTAACTCCTCCTCCCTAGTGAAGTTTGATTTCATCCTTCATTCTCTTTCAGGATTTAGGTTCTGGATCCCTGTCAGCATTTTGAACTTTTGGTATGTCTTTTACTACTCCTTAGCCCCTTCCCCAACCTCATCCCAAAATATGGACAGATATAAAACAAAAACTTCTCATAATCTCTGTTAGTCTTGTCGTAATGGAGATCTTCTCATTCTCGTAAAAATGTTTTTCCTGAGATCATAGATGTTATTTTTTCTGAGTCTTTAGTATAATGAAATATGACAACTTCTGTGTTGAAAAATGATAGGGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCTGGAATTTCTGTTTGTCAGCAACTATGAGCAAGTAACTACC</genome_strand>
        <mrna_strand>CAAAAAAACAAG-ATGGGTTCATTGAGTGGTGGAAATGGAAGTATATGGGGAATGGGATTTTTCCATTCTCAAGAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCAAATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGATTGGTGCACTCCTATCTGAGCATGACTGGCTTCGGTCAGTCCGGATGGCTTCATATGGATTTTTGTTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCAAGCAAAGCGTGGAGAATGTAATGATGAAG...........................................................................................................................GTTTTATTAAACCAAAATAGTGCTAGGTCCTTCTGTAATAGCTGTTATCTTTGCATGGAATAATTTATGGCTGGGAAAACTTTCAGAACTTCCAAACAAGTATCAGAAAGATGCCCTTCCAACTTTATTGTTCG........................................................................................GATTTAGGTTCTGGATCCCTGTCAGCATTTTGAACTTTTG....................................................................................................................................................................................................................GGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCTGGAATTTCTGTTTGTCAGCAACTATGAGCAAGTAACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E347816" ref_strand="+" ref_description="SGN-E347816 	[cTOF-26-D22]">
      <seq>aaaacagatgggttcgtgagtggtggaaatggaagtatatggggaatgggatttttccttctcaagaatggaattctggaagaagaagaaggagaagtaatggtggaaaatcgtcaaattcggattcagtggatgcaaatggtggagctggttatcgttttcctctgaagcaagctatgacggctagctctcttgcacttagtggtgacaccattgctcagcttcgtgaccggtggctcaagaacaaagataatcttcctgatccatctcatcctaaggatatgattggtgcactcctatctgagcatgactggcttcggtcagtccggatggcttcatatggatttttgttatatggtcccggtacttatgcatggtactcatatcttgacagatgtatgcccaagcaaagcgtggagaatgtaatgatgaaggttttattaaaccaaatagtgctaggtccttctgtaatagctgttatctttgcatggaataatttatggctgggaaaactttcagaacttccaaacaagtatcagaaagatgcccttccaactttattgttcggatttaggttcctgatccctgtcagcattttgaacttttgggccattcctcttcaagctcgtgttgcattcatgtctatggcctctatattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="39153" stop="35053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38872" g_stop="38591" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38590" i_stop="36158" i_length="2433">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36157" g_stop="36002" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="434" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36001" i_stop="35879" i_length="123">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35878" g_stop="35746" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="567" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35745" i_stop="35658" i_length="88">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35657" g_stop="35618" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="607" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35617" i_stop="35406" i_length="212">
            <donor d_prob="0.935" d_score="0.95"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35405" g_stop="35353" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="660" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E347816" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38872" e_stop="38591"/>
          <exon e_start="36157" e_stop="36002"/>
          <exon e_start="35878" e_stop="35746"/>
          <exon e_start="35657" e_stop="35618"/>
          <exon e_start="35405" e_stop="35353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAGAATGGGTTCATTGAGTGGTGGAAATGGAAGTATATGGGGAATGGGATTTTTCCATTCTCAAGAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCAAATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAGGTTAATTTTCTAAAAAAGATTGGAATTTGGTGAAATTTAAGGTTACTTATCTTGTAAAGTAACCAAATTTATTGGCTTTTGGAGTTGTGGGGTTTTTTGAAATATTGGTATTTCTTGAAACCCCACTTGGAATTCTTGAACTCATTTTGGGAATTTGGGGAACTATATAAAGGTCATGTTTGGCAGTTGTGATAATGTGAATTGTCTGTTTGTTAGTTCATGACTTGGTAAATTTGATTGCTTTTGATTTTTTATCTAACAATGAGTTAGGTTGAGAAACTCAGAGTAGGACAGATGTGCCAAATTTGAATACTTGACAGTGAAGTGAATAGAAAGTAGAGAGAAGGTTGGTTACATGGTACGAGAAGTTTGAATAGGGTGAAATTTATGTATCAAGAGCAGTATGAAGAGCTGATTAATATTCCGTGGTAAAAGAATAATTTTTTTAAGCAATTTATGTCAATGTGATCATAGTAAACGCGGAAGAGTTCATTCTGGCATAATTGCTGTTCTTTGATAATCATATAAAGTAAGTATTCCAAACCAATAATGATGTATCAGTTTGAAACCGATATTTATGATCTTACGAGGTAATTCGTGGGATTCAAATGAAAATGATTGAAAAAGAGGTTTGCCGTCTAACGAAATTTATGGTCTCAGGTGTCATTAGAATGTAATTATTGTCTGCAGAGTGTATCTGTATTGCACATAGATTCTTGTTGCTGTCCAAAAGGTAGTTCATATTCAGGGATAAAGTATTACCTCGAGGTGGTCCTTTTGTGGAAGCATGAGTGTGATGCCTCCCTGTGCTTTCAAGAACAACCAAGCAAAGTGGGAGGCAGGAATTAACACTGTCCGAGTATGTGCCTACTTCCACATATTTTGTTTCAGCATATATTCTGTTCAGTTCCAGTGGACCAACTTATTCCTAATCAATAGGCTCATTAGGCCTGTCTTTTTTTTTGCCCCTAGTGTATGTGCTTTTGGCTCTTAGCTATCCATATGTGTACTTAACTATGTTTTTTTTATGTCTTCTCACCGTAGTTGTCTGTCTTGAAAGAGGTTACGTATCCTCATTCTCTGACTCTGTTATTGACTAGACTTACATGACCCAAGGAATAATTTCATATGGTATGTAATTTTACCTTAAGTAACAAAATTAAAAAGCTTAAGAAAAGATTGTTTCAGAGACAACTTTAGACTCCCTTCAGCTGGTGCTTTACCTGCTTTAATCTCTTTTCGAAGATTAGTGTCCTGTCTATCACTAGTCTCCTTTGAGGTTTTCAAAACAGTATCTGCTGAGAATTTCCGGTTTTGAAGAGCATCATGCTAAGAACATGTTTTCATAAAATAGTTTACATGCACTCTAATGGTTAATCTCTTTGGCACATAGTGTTTGTGATTTAACCAGTCACATGTACTATATATGTGTCCCTTCTGTTTCCCCCCTTATCAGTAACAACACTTAAATTTCTAATTAGGTTATAGCCATTGATCCTCTATAGCCATCACTCTTCCAGTGATTAACTTGTTCCATTATTATTGACCTGCCTGTGTCTATTAACTTATCCATGCGGAGATATACAATATCGCATGCTTCCATAAAGAGAAAAGAATAGCCACGCAAAAAGAAATTCTAGATTTATTGCTTGTATTTGTGCTGTTGACACTACATACAATTAGAAAAAAGGAAAGAAATTACTTGCTAATCAGCTTGTTCTTTTGTTCTTTTGTGCATGTTGGGACTAGGGGGGGTCTAGAGTTTGCATATCCTTTGTATTTGATTATTTTATTCTCAGAAGGGAGGAGTGGGGGTTAATTAGGAAGTACTCTCTTGTACTCCTACCAGAGAAGAAGCAAATGGAGAAATCTTCTCCCGAGTGGTGCCTAGTGCTGCCCTCATCTACAGACCAAGGAAAAGGTCAATATTCCATCCACCTTTAGCACCCTCTCAAGCTTCACAACAAACGTTCCTTGATTGATCACTACACCACAAGCCAACTCCATTGGCATATTGGCAACCTTACAATCACTTGATCTATATATATTATGTACTTGTCTTTCTGTCAATTTTTGTTACCAATCAACCCCTTTTGGGAAATTTCATATTCTTTATGAACTAATTAAAACGGTGATCATTGGATTTTCTGTTCTTAAATATTATATCCAGCTTTAGGAGTTGATGCTAGTTGTACACTGAATTGATTCTCACATTTTGGCAATAGCTTATCTATATGTTTGCTAATACATCTTAACAGCTAAAGATTTTGCATGTCTTATGGCGTACTCAAAGAAAAGAAGAAGATTTTGCATGTTGTCTGCTCTCTCATAAAATGGCTTCTCTTTGCTATCTGATTCACTGAATTAAGAATGTATCTTGGGAGTATTTACACACTAATCTGAATTTTGTATTTGACCAAAATCTTGTTTTAGGATATGATTGGTGCACTCCTATCTGAGCATGACTGGCTTCGGTCAGTCCGGATGGCTTCATATGGATTTTTGTTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCAAGCAAAGCGTGGAGAATGTAATGATGAAGGTAGTTATGCTTCTGAGAAGAACCTCTTTCATGATGAGCTTGACCTACCAATGAAGAAAGAACTACTTCTATGCAAGTTTGACCTGTCCATCTAACTAGTACCTTTAATACTCTTTGTTTCAGGTTTTATTAAACCAAATAGTGCTAGGTCCTTCTGTAATAGCTGTTATCTTTGCATGGAATAATTTATGGCTGGGAAAACTTTCAGAACTTCCAAACAAGTATCAGAAAGATGCCCTTCCAACTTTATTGTTCGGTAAGCACTTCCATATGACATACCTTTGCCGGTTGCTTTAACTCCTCCTCCCTAGTGAAGTTTGATTTCATCCTTCATTCTCTTTCAGGATTTAGGTTCTGGATCCCTGTCAGCATTTTGAACTTTTGGTATGTCTTTTACTACTCCTTAGCCCCTTCCCCAACCTCATCCCAAAATATGGACAGATATAAAACAAAAACTTCTCATAATCTCTGTTAGTCTTGTCGTAATGGAGATCTTCTCATTCTCGTAAAAATGTTTTTCCTGAGATCATAGATGTTATTTTTTCTGAGTCTTTAGTATAATGAAATATGACAACTTCTGTGTTGAAAAATGATAGGGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCT</genome_strand>
        <mrna_strand>AAAAC-AGA-TGGGTTC-GTGAGTGGTGGAAATGGAAGTATATGGGGAATGGGATTTTTCC-TTCTCAAGAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCAAATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGATTGGTGCACTCCTATCTGAGCATGACTGGCTTCGGTCAGTCCGGATGGCTTCATATGGATTTTTGTTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCAAGCAAAGCGTGGAGAATGTAATGATGAAG...........................................................................................................................GTTTTATTAAACCAAATAGTGCTAGGTCCTTCTGTAATAGCTGTTATCTTTGCATGGAATAATTTATGGCTGGGAAAACTTTCAGAACTTCCAAACAAGTATCAGAAAGATGCCCTTCCAACTTTATTGTTCG........................................................................................GATTTAGGTTCCTGATCCCTGTCAGCATTTTGAACTTTTG....................................................................................................................................................................................................................GGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E344147" ref_strand="+" ref_description="SGN-E344147 	[cTOF-16-I4]">
      <seq>caaaaaaacaagaatgggttcattgagtggtggaaatggaagtatatggggaatgggatttttccattctcaagaatggaattctggaagaagaagaaggagaagtaatggtggaaaatcgtcaaattcggattcagtggatgcaaatggtggagctggttatcgttttcctctgaagcaagctatgacggctagctctcttgcacttagtggtgacaccattgctcagcttcgtgaccggtggctcaagaacaaagataatcttcctgatccatctcatcctaaggatatgattggtgcactcctatctgagcatgactggcttcggtcagtccggatggcttcatatggatttttgttatatggtcccggtacttatgcatggtactcatatcttgacagatgtatgcccaagcaaagcgtggagaatgtaatgatgaaggttttattaaaccaaatagtgctaggtccttctgtaatagctgttatctttgcatggaataatttatggctgggaaaactttcagaacttccaaacaagtatcagaaagatgcccttccaactttattgttcggatttaggttctggatccctgtcagcattttgaaacttttggccattcctcttcaagctcgtgttgcattcatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="39176" stop="35070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38876" g_stop="38591" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38590" i_stop="36158" i_length="2433">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36157" g_stop="36002" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="442" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36001" i_stop="35879" i_length="123">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35878" g_stop="35746" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="575" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35745" i_stop="35658" i_length="88">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35657" g_stop="35618" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="615" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35617" i_stop="35406" i_length="212">
            <donor d_prob="0.935" d_score="0.93"/>
            <acceptor a_prob="0.862" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35405" g_stop="35370" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="651" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E344147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38876" e_stop="38591"/>
          <exon e_start="36157" e_stop="36002"/>
          <exon e_start="35878" e_stop="35746"/>
          <exon e_start="35657" e_stop="35618"/>
          <exon e_start="35405" e_stop="35370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAACAAGAATGGGTTCATTGAGTGGTGGAAATGGAAGTATATGGGGAATGGGATTTTTCCATTCTCAAGAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCAAATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAGGTTAATTTTCTAAAAAAGATTGGAATTTGGTGAAATTTAAGGTTACTTATCTTGTAAAGTAACCAAATTTATTGGCTTTTGGAGTTGTGGGGTTTTTTGAAATATTGGTATTTCTTGAAACCCCACTTGGAATTCTTGAACTCATTTTGGGAATTTGGGGAACTATATAAAGGTCATGTTTGGCAGTTGTGATAATGTGAATTGTCTGTTTGTTAGTTCATGACTTGGTAAATTTGATTGCTTTTGATTTTTTATCTAACAATGAGTTAGGTTGAGAAACTCAGAGTAGGACAGATGTGCCAAATTTGAATACTTGACAGTGAAGTGAATAGAAAGTAGAGAGAAGGTTGGTTACATGGTACGAGAAGTTTGAATAGGGTGAAATTTATGTATCAAGAGCAGTATGAAGAGCTGATTAATATTCCGTGGTAAAAGAATAATTTTTTTAAGCAATTTATGTCAATGTGATCATAGTAAACGCGGAAGAGTTCATTCTGGCATAATTGCTGTTCTTTGATAATCATATAAAGTAAGTATTCCAAACCAATAATGATGTATCAGTTTGAAACCGATATTTATGATCTTACGAGGTAATTCGTGGGATTCAAATGAAAATGATTGAAAAAGAGGTTTGCCGTCTAACGAAATTTATGGTCTCAGGTGTCATTAGAATGTAATTATTGTCTGCAGAGTGTATCTGTATTGCACATAGATTCTTGTTGCTGTCCAAAAGGTAGTTCATATTCAGGGATAAAGTATTACCTCGAGGTGGTCCTTTTGTGGAAGCATGAGTGTGATGCCTCCCTGTGCTTTCAAGAACAACCAAGCAAAGTGGGAGGCAGGAATTAACACTGTCCGAGTATGTGCCTACTTCCACATATTTTGTTTCAGCATATATTCTGTTCAGTTCCAGTGGACCAACTTATTCCTAATCAATAGGCTCATTAGGCCTGTCTTTTTTTTTGCCCCTAGTGTATGTGCTTTTGGCTCTTAGCTATCCATATGTGTACTTAACTATGTTTTTTTTATGTCTTCTCACCGTAGTTGTCTGTCTTGAAAGAGGTTACGTATCCTCATTCTCTGACTCTGTTATTGACTAGACTTACATGACCCAAGGAATAATTTCATATGGTATGTAATTTTACCTTAAGTAACAAAATTAAAAAGCTTAAGAAAAGATTGTTTCAGAGACAACTTTAGACTCCCTTCAGCTGGTGCTTTACCTGCTTTAATCTCTTTTCGAAGATTAGTGTCCTGTCTATCACTAGTCTCCTTTGAGGTTTTCAAAACAGTATCTGCTGAGAATTTCCGGTTTTGAAGAGCATCATGCTAAGAACATGTTTTCATAAAATAGTTTACATGCACTCTAATGGTTAATCTCTTTGGCACATAGTGTTTGTGATTTAACCAGTCACATGTACTATATATGTGTCCCTTCTGTTTCCCCCCTTATCAGTAACAACACTTAAATTTCTAATTAGGTTATAGCCATTGATCCTCTATAGCCATCACTCTTCCAGTGATTAACTTGTTCCATTATTATTGACCTGCCTGTGTCTATTAACTTATCCATGCGGAGATATACAATATCGCATGCTTCCATAAAGAGAAAAGAATAGCCACGCAAAAAGAAATTCTAGATTTATTGCTTGTATTTGTGCTGTTGACACTACATACAATTAGAAAAAAGGAAAGAAATTACTTGCTAATCAGCTTGTTCTTTTGTTCTTTTGTGCATGTTGGGACTAGGGGGGGTCTAGAGTTTGCATATCCTTTGTATTTGATTATTTTATTCTCAGAAGGGAGGAGTGGGGGTTAATTAGGAAGTACTCTCTTGTACTCCTACCAGAGAAGAAGCAAATGGAGAAATCTTCTCCCGAGTGGTGCCTAGTGCTGCCCTCATCTACAGACCAAGGAAAAGGTCAATATTCCATCCACCTTTAGCACCCTCTCAAGCTTCACAACAAACGTTCCTTGATTGATCACTACACCACAAGCCAACTCCATTGGCATATTGGCAACCTTACAATCACTTGATCTATATATATTATGTACTTGTCTTTCTGTCAATTTTTGTTACCAATCAACCCCTTTTGGGAAATTTCATATTCTTTATGAACTAATTAAAACGGTGATCATTGGATTTTCTGTTCTTAAATATTATATCCAGCTTTAGGAGTTGATGCTAGTTGTACACTGAATTGATTCTCACATTTTGGCAATAGCTTATCTATATGTTTGCTAATACATCTTAACAGCTAAAGATTTTGCATGTCTTATGGCGTACTCAAAGAAAAGAAGAAGATTTTGCATGTTGTCTGCTCTCTCATAAAATGGCTTCTCTTTGCTATCTGATTCACTGAATTAAGAATGTATCTTGGGAGTATTTACACACTAATCTGAATTTTGTATTTGACCAAAATCTTGTTTTAGGATATGATTGGTGCACTCCTATCTGAGCATGACTGGCTTCGGTCAGTCCGGATGGCTTCATATGGATTTTTGTTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCAAGCAAAGCGTGGAGAATGTAATGATGAAGGTAGTTATGCTTCTGAGAAGAACCTCTTTCATGATGAGCTTGACCTACCAATGAAGAAAGAACTACTTCTATGCAAGTTTGACCTGTCCATCTAACTAGTACCTTTAATACTCTTTGTTTCAGGTTTTATTAAACCAAATAGTGCTAGGTCCTTCTGTAATAGCTGTTATCTTTGCATGGAATAATTTATGGCTGGGAAAACTTTCAGAACTTCCAAACAAGTATCAGAAAGATGCCCTTCCAACTTTATTGTTCGGTAAGCACTTCCATATGACATACCTTTGCCGGTTGCTTTAACTCCTCCTCCCTAGTGAAGTTTGATTTCATCCTTCATTCTCTTTCAGGATTTAGGTTCTGGATCCCTGTCAGCATTTTGAACTTTTGGTATGTCTTTTACTACTCCTTAGCCCCTTCCCCAACCTCATCCCAAAATATGGACAGATATAAAACAAAAACTTCTCATAATCTCTGTTAGTCTTGTCGTAATGGAGATCTTCTCATTCTCGTAAAAATGTTTTTCCTGAGATCATAGATGTTATTTTTTCTGAGTCTTTAGTATAATGAAATATGACAACTTCTGTGTTGAAAAATGATAGGGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTC</genome_strand>
        <mrna_strand>CAAAAAAACAAGAATGGGTTCATTGAGTGGTGGAAATGGAAGTATATGGGGAATGGGATTTTTCCATTCTCAAGAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCAAATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGATTGGTGCACTCCTATCTGAGCATGACTGGCTTCGGTCAGTCCGGATGGCTTCATATGGATTTTTGTTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCAAGCAAAGCGTGGAGAATGTAATGATGAAG...........................................................................................................................GTTTTATTAAACCAAATAGTGCTAGGTCCTTCTGTAATAGCTGTTATCTTTGCATGGAATAATTTATGGCTGGGAAAACTTTCAGAACTTCCAAACAAGTATCAGAAAGATGCCCTTCCAACTTTATTGTTCG........................................................................................GATTTAGGTTCTGGATCCCTGTCAGCATTTTGAAACTTTT....................................................................................................................................................................................................................GGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E322275" ref_strand="+" ref_description="SGN-E322275 	[cTOB-24-C9]">
      <seq>agaagagaggagcaaaaatcaagaatgggttcattgagtggtggaaatggaagtatatcgggaatgggatttttccattctcaacaatggaattctggaagaagaagaaggagaagtaatggtggaaaatcgtcaaattcggattcagtggatgcacatggtggagctggttatcgttttcctctgaagcaagctatgacggctagctctcttgcacttagtggtgacaccattgctcagcttcgtgaccggtggctcaagaacaaagataatcttcctgatccatctcatcctaaggatatgattggcgcactcctatctgagcatgactggcttctgtcagtccggatggcttcatatggatttttggtatatggtcccggtacttatgcatggtactcatatcttgacagatgtatgcccctgcaaatcgtggagaatggaatgatgaaggatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="39188" stop="35694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38888" g_stop="38591" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38590" i_stop="36158" i_length="2433">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36157" g_stop="35994" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="460" r_length="163" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E322275" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38888" e_stop="38591"/>
          <exon e_start="36157" e_stop="35994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAGGAACAAAAAAACAAGAATGGGTTCATTGAGTGGTGGAAATGGAAGTATATGGGGAATGGGATTTTTCCATTCTCAAGAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCAAATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAGGTTAATTTTCTAAAAAAGATTGGAATTTGGTGAAATTTAAGGTTACTTATCTTGTAAAGTAACCAAATTTATTGGCTTTTGGAGTTGTGGGGTTTTTTGAAATATTGGTATTTCTTGAAACCCCACTTGGAATTCTTGAACTCATTTTGGGAATTTGGGGAACTATATAAAGGTCATGTTTGGCAGTTGTGATAATGTGAATTGTCTGTTTGTTAGTTCATGACTTGGTAAATTTGATTGCTTTTGATTTTTTATCTAACAATGAGTTAGGTTGAGAAACTCAGAGTAGGACAGATGTGCCAAATTTGAATACTTGACAGTGAAGTGAATAGAAAGTAGAGAGAAGGTTGGTTACATGGTACGAGAAGTTTGAATAGGGTGAAATTTATGTATCAAGAGCAGTATGAAGAGCTGATTAATATTCCGTGGTAAAAGAATAATTTTTTTAAGCAATTTATGTCAATGTGATCATAGTAAACGCGGAAGAGTTCATTCTGGCATAATTGCTGTTCTTTGATAATCATATAAAGTAAGTATTCCAAACCAATAATGATGTATCAGTTTGAAACCGATATTTATGATCTTACGAGGTAATTCGTGGGATTCAAATGAAAATGATTGAAAAAGAGGTTTGCCGTCTAACGAAATTTATGGTCTCAGGTGTCATTAGAATGTAATTATTGTCTGCAGAGTGTATCTGTATTGCACATAGATTCTTGTTGCTGTCCAAAAGGTAGTTCATATTCAGGGATAAAGTATTACCTCGAGGTGGTCCTTTTGTGGAAGCATGAGTGTGATGCCTCCCTGTGCTTTCAAGAACAACCAAGCAAAGTGGGAGGCAGGAATTAACACTGTCCGAGTATGTGCCTACTTCCACATATTTTGTTTCAGCATATATTCTGTTCAGTTCCAGTGGACCAACTTATTCCTAATCAATAGGCTCATTAGGCCTGTCTTTTTTTTTGCCCCTAGTGTATGTGCTTTTGGCTCTTAGCTATCCATATGTGTACTTAACTATGTTTTTTTTATGTCTTCTCACCGTAGTTGTCTGTCTTGAAAGAGGTTACGTATCCTCATTCTCTGACTCTGTTATTGACTAGACTTACATGACCCAAGGAATAATTTCATATGGTATGTAATTTTACCTTAAGTAACAAAATTAAAAAGCTTAAGAAAAGATTGTTTCAGAGACAACTTTAGACTCCCTTCAGCTGGTGCTTTACCTGCTTTAATCTCTTTTCGAAGATTAGTGTCCTGTCTATCACTAGTCTCCTTTGAGGTTTTCAAAACAGTATCTGCTGAGAATTTCCGGTTTTGAAGAGCATCATGCTAAGAACATGTTTTCATAAAATAGTTTACATGCACTCTAATGGTTAATCTCTTTGGCACATAGTGTTTGTGATTTAACCAGTCACATGTACTATATATGTGTCCCTTCTGTTTCCCCCCTTATCAGTAACAACACTTAAATTTCTAATTAGGTTATAGCCATTGATCCTCTATAGCCATCACTCTTCCAGTGATTAACTTGTTCCATTATTATTGACCTGCCTGTGTCTATTAACTTATCCATGCGGAGATATACAATATCGCATGCTTCCATAAAGAGAAAAGAATAGCCACGCAAAAAGAAATTCTAGATTTATTGCTTGTATTTGTGCTGTTGACACTACATACAATTAGAAAAAAGGAAAGAAATTACTTGCTAATCAGCTTGTTCTTTTGTTCTTTTGTGCATGTTGGGACTAGGGGGGGTCTAGAGTTTGCATATCCTTTGTATTTGATTATTTTATTCTCAGAAGGGAGGAGTGGGGGTTAATTAGGAAGTACTCTCTTGTACTCCTACCAGAGAAGAAGCAAATGGAGAAATCTTCTCCCGAGTGGTGCCTAGTGCTGCCCTCATCTACAGACCAAGGAAAAGGTCAATATTCCATCCACCTTTAGCACCCTCTCAAGCTTCACAACAAACGTTCCTTGATTGATCACTACACCACAAGCCAACTCCATTGGCATATTGGCAACCTTACAATCACTTGATCTATATATATTATGTACTTGTCTTTCTGTCAATTTTTGTTACCAATCAACCCCTTTTGGGAAATTTCATATTCTTTATGAACTAATTAAAACGGTGATCATTGGATTTTCTGTTCTTAAATATTATATCCAGCTTTAGGAGTTGATGCTAGTTGTACACTGAATTGATTCTCACATTTTGGCAATAGCTTATCTATATGTTTGCTAATACATCTTAACAGCTAAAGATTTTGCATGTCTTATGGCGTACTCAAAGAAAAGAAGAAGATTTTGCATGTTGTCTGCTCTCTCATAAAATGGCTTCTCTTTGCTATCTGATTCACTGAATTAAGAATGTATCTTGGGAGTATTTACACACTAATCTGAATTTTGTATTTGACCAAAATCTTGTTTTAGGATATGATTGGTGCACTCCTATCTGAGCATGACTGGCTTCGGTCAGTCCGGATGGCTTCATATGGATTTTTGTTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCAAGCAAAGCGTGGAGAATGTAATGATGAAGGTAGTTAT</genome_strand>
        <mrna_strand>AGAAGAGAGGAGC-AAAAATCAAGAATGGGTTCATTGAGTGGTGGAAATGGAAGTATATCGGGAATGGGATTTTTCCATTCTCAACAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCACATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGATTGGCGCACTCCTATCTGAGCATGACTGGCTTCTGTCAGTCCGGATGGCTTCATATGGATTTTTGGTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCCTGCAAATCGTGGAGAATGGAATGATGAAGG-ATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E545486" ref_strand="-" ref_description="SGN-E545486 	[TUS-68-F19]">
      <seq>atcgaagaagtcattgaagaatgcaagttgttctattttgctggacaagaaactacatcggcgttgcttgtatggactctaattttgttgtgcagacatcacgattggcagacacgggccagaacagaggtattgcaagtgtttgggagtcggaaaccagattttgatggactgactcatctaaaagtagtgacaatgatcttgtacgaatcgttaaggttataccctccagtaacgacagttacacgccggcttaatgaagatgctgtactaggagatatatctctaccagcagacgtgctactctcattaccagcggtcttattacaccacgatgaagagatatggggtgaagacgcaaagaaattcaatccagagagatttagagaaggcgtttcaagtgcaacaaagggtcaagtcactttcttcccgtttacatggggtcctagaatatgcattggacaaaacttcgctatgttagaagcaaagatggtgttggctatgatcctacaacgtttctcattggatttatccacatcttatactcatgctcttcattccgttataactacgcaaccccaatatggtgctccacttattttacacaaactatagtttgtacttgtaagcagtgtcttgttatatgttaagagagagttcaaacatgattaataaaggcttgtagaactgcctattgtttgttttagagtttcaagtgtgcagatactgtatatggaaaatctacaacatccaagtaatttacttaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="46926" stop="45482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46626" g_stop="46438" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46437" i_stop="46360" i_length="78">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46359" g_stop="45784" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="765" r_length="576" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="766" polyA_stop="784"/>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E545486" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545486" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46626" e_stop="46438"/>
          <exon e_start="46359" e_stop="45784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAAGAAGTCATTGAAGAATGCAAGTTGTTCTATTTTGCTGGACAAGAAACTACATCGGCGTTGCTTGTATGGACTCTAATTTTGTTGTGCAGACATCACGATTGGCAGACACGGGCCAGAACAGAGGTATTGCAAGTGTTTGGGAGTCGGAAACCAGATTTTGATGGACTGACTCATCTAAAAGTAGTAAGTATTATCGTTCAGTAATGCTTAAATCAGACGAAAATTGCATTGTAGTTCAACTGTTTGATGTTATATATGCAGGTGACAATGATCTTGTACGAATCGTTAAGGTTATACCCTCCAGTAACGACAGTTACACGCCGGCTTAATGAAGATGCTGTACTAGGAGATATATCTCTACCAGCAGACGTGCTACTCTCATTACCAGCGGTCTTATTACACCACGATGAAGAGATATGGGGTGAAGACGCAAAGAAATTCAATCCAGAGAGATTTAGAGAAGGCGTTTCAAGTGCAACAAAGGGTCAAGTCACTTTCTTCCCGTTTACATGGGGTCCTAGAATATGCATTGGACAAAACTTCGCTATGTTAGAAGCAAAGATGGTGTTGGCTATGATCCTACAACGTTTCTCATTGGATTTATCCACATCTTATACTCATGCTCTTCATTCCGTTATAACTACGCAACCCCAATATGGTGCTCCACTTATTTTACACAAACTATAGTTTGTACTTGTAAGCAGTGTCTTGTTATATGTTAAGAGAGAGTTCAAACATGATTAATAAAGGCTTGTAGAACTGCCTATTGTTTGTTTTAGAGTTTCAAGTGTGCAGATACTGTATATGGAAAATCTACAACATCCAAGTAATTTACTT</genome_strand>
        <mrna_strand>ATCGAAGAAGTCATTGAAGAATGCAAGTTGTTCTATTTTGCTGGACAAGAAACTACATCGGCGTTGCTTGTATGGACTCTAATTTTGTTGTGCAGACATCACGATTGGCAGACACGGGCCAGAACAGAGGTATTGCAAGTGTTTGGGAGTCGGAAACCAGATTTTGATGGACTGACTCATCTAAAAGTA..............................................................................GTGACAATGATCTTGTACGAATCGTTAAGGTTATACCCTCCAGTAACGACAGTTACACGCCGGCTTAATGAAGATGCTGTACTAGGAGATATATCTCTACCAGCAGACGTGCTACTCTCATTACCAGCGGTCTTATTACACCACGATGAAGAGATATGGGGTGAAGACGCAAAGAAATTCAATCCAGAGAGATTTAGAGAAGGCGTTTCAAGTGCAACAAAGGGTCAAGTCACTTTCTTCCCGTTTACATGGGGTCCTAGAATATGCATTGGACAAAACTTCGCTATGTTAGAAGCAAAGATGGTGTTGGCTATGATCCTACAACGTTTCTCATTGGATTTATCCACATCTTATACTCATGCTCTTCATTCCGTTATAACTACGCAACCCCAATATGGTGCTCCACTTATTTTACACAAACTATAGTTTGTACTTGTAAGCAGTGTCTTGTTATATGTTAAGAGAGAGTTCAAACATGATTAATAAAGGCTTGTAGAACTGCCTATTGTTTGTTTTAGAGTTTCAAGTGTGCAGATACTGTATATGGAAAATCTACAACATCCAAGTAATTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E311150" ref_strand="+" ref_description="SGN-E311150 	[cLEZ-16-D4]">
      <seq>atttgaacttcaaacagaacaagctcagtatttcattgaagctgtacgctccgtttatatcccagggtggagttttttgccaacaaagaggaatcgaagaatgaaggaaatcgagaagcatgttcaggctacaattagaggaattattgataaaagagtgaaggcaatgacaggaggagaggcgaataacaaggatctacttggtatattgctcgaatcaaattttaaagaaatcaaacaacatggagacaaggactttggacttagcatcgaagaagtcattgaagaatgcaagttgttctattttgctggacaagaaactacatcggcgttgcttgtatggactctaattttgttgtgcagacatcacgattggcagacacgggccagaacagaggtattgcaagtgtttgggagtcggaaaccagattttgatggactgactcatctaaaagtagtgacaatgatcttgtacgaatcgttaaggttataccctccagtaacgacagttacacgccggcttaatgaagatgctgtactaggagatatatctctaccagcagacgtgctactctcattaccagcggtcttattacaccacgatgaagagatatggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="47288" stop="45898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46988" g_stop="46917" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46916" i_stop="46823" i_length="94">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46822" g_stop="46438" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="457" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46437" i_stop="46360" i_length="78">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46359" g_stop="46198" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="619" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E311150" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46988" e_stop="46917"/>
          <exon e_start="46822" e_stop="46438"/>
          <exon e_start="46359" e_stop="46198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAACTTCAAACAGAACAAGCTCAGTATTTCATTGAAGCTGTACGCTCCGTTTATATCCCAGGGTGGAGGTAAATTGATGTTGTCATACTATAGTCATTGTACTCGAATACAAAATCTCGTTCACTTATAGCTAGATTTCTTATTTATTGAACTATATCGTAGTTTTTTGCCAACAAAGAGGAATCGAAGAATGAAGGAAATCGAGAAGCATGTTCAGGCTACAATTAGAGGAATTATTGATAAAAGAGTGAAGGCAATGACAGGAGGAGAGGCGAATAACAAGGATCTACTTGGTATATTGCTCGAATCAAATTTTAAAGAAATCAAACAACATGGAGACAAGGACTTTGGACTTAGCATCGAAGAAGTCATTGAAGAATGCAAGTTGTTCTATTTTGCTGGACAAGAAACTACATCGGCGTTGCTTGTATGGACTCTAATTTTGTTGTGCAGACATCACGATTGGCAGACACGGGCCAGAACAGAGGTATTGCAAGTGTTTGGGAGTCGGAAACCAGATTTTGATGGACTGACTCATCTAAAAGTAGTAAGTATTATCGTTCAGTAATGCTTAAATCAGACGAAAATTGCATTGTAGTTCAACTGTTTGATGTTATATATGCAGGTGACAATGATCTTGTACGAATCGTTAAGGTTATACCCTCCAGTAACGACAGTTACACGCCGGCTTAATGAAGATGCTGTACTAGGAGATATATCTCTACCAGCAGACGTGCTACTCTCATTACCAGCGGTCTTATTACACCACGATGAAGAGATATGGGGT</genome_strand>
        <mrna_strand>ATTTGAACTTCAAACAGAACAAGCTCAGTATTTCATTGAAGCTGTACGCTCCGTTTATATCCCAGGGTGGAG..............................................................................................TTTTTTGCCAACAAAGAGGAATCGAAGAATGAAGGAAATCGAGAAGCATGTTCAGGCTACAATTAGAGGAATTATTGATAAAAGAGTGAAGGCAATGACAGGAGGAGAGGCGAATAACAAGGATCTACTTGGTATATTGCTCGAATCAAATTTTAAAGAAATCAAACAACATGGAGACAAGGACTTTGGACTTAGCATCGAAGAAGTCATTGAAGAATGCAAGTTGTTCTATTTTGCTGGACAAGAAACTACATCGGCGTTGCTTGTATGGACTCTAATTTTGTTGTGCAGACATCACGATTGGCAGACACGGGCCAGAACAGAGGTATTGCAAGTGTTTGGGAGTCGGAAACCAGATTTTGATGGACTGACTCATCTAAAAGTA..............................................................................GTGACAATGATCTTGTACGAATCGTTAAGGTTATACCCTCCAGTAACGACAGTTACACGCCGGCTTAATGAAGATGCTGTACTAGGAGATATATCTCTACCAGCAGACGTGCTACTCTCATTACCAGCGGTCTTATTACACCACGATGAAGAGATATGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 	[TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="65463" stop="66711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65763" g_stop="66411" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65763" e_stop="66411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAATGAGAGCGATTTAAAAGAACCTGAAAAGGAGGATCAAAAGCCACAGACAGAAACTGATATCCCAGAATCTATGCCATCAGATATCCATCGGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGCCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAAGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGACAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGAGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATTTGGAGCTTGAACAACTTGATGTGAAGACAACGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 	[cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="65464" stop="66448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65764" g_stop="66148" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65764" e_stop="66148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAATGAGAGCGATTTAAAAGAACCTGAAAAGGAGGATCAAAAGCCACAGACAGAAACTGATATCCCAGAATCTATGCCATCAGATATCCATCGGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGCCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 	[cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="66122" stop="67529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66422" g_stop="67229" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66422" e_stop="67229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGAAAGCTATATGGTGATGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCACTCGAAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTGCCAATATCCATCTCACGACCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTTTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAAAGAACATTGGCAGGCTGTGAAGAGAATTTTTCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGATATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTTGAAGACAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E243194" ref_strand="-" ref_description="SGN-E243194 	[cLEE-2-G17]">
      <seq>ttcagagagattctttgtgttgagacataaattttgcaaaggagattatggagaggagaagcaagttgttgaagattaagtgaagaaggtggacaagtttatttgtcagaaattcaggccaagggggagacttgttgggttttatttgccctaaatttcttaccataaataggttttccttgtaggaaaaggttttggattgactaatccttttcttgtaggaaaaggttttggattgactaatccttttcttgtaggaaaaggtttaggactccataaatagaggcatttttcttctaacttaatcagcattcaaaatgtagtcttaagtgctttgagagttttggttagagggagaatttgtgggtcacaagcttgatacgttatcacttgtgtgaacctcccatgtattctgagtgaattggttgaggttgtttccctctgtattttgtactctcatatttatagtggattgctcatctcctttgtggacgtaggtcgattgaccgaaccacgttaaatctttatgtctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="71893" stop="86693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72193" g_stop="72419" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72420" i_stop="86083" i_length="13664">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86084" g_stop="86393" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="535" r_length="308" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E243194" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243194" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72193" e_stop="72419"/>
          <exon e_start="86084" e_stop="86393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGAGAGGTTCTCTGTGTTGAGACATAAATTTTGTAAAGGAGATTATGGAGAGGAGAAGCAAGTTGTTGAAGATTAAGTAAAGAAAGTGGACAAATTTATTTTGTCAGAAACTCAGGCCAAGGGGGAGATTTGTTGGGTTTTATTTGCCCT-GATTTCTTACCATAAATAGGTTTTCATTTTAGGAAAAGGTTTTGAATTGACTATTCTTTTTTTGGTAGGAAAAGGTTTAGGACTCTATAAATAGAGGCATATTCCTTCTAACTTAATTAGCATTCACAATGTAGTTTTAAGGGCTTTGAGAGTTTTGGTTAGAGGGAGAATCTGTGAACCTCTCATGTATTCCGAGTGAATTGGTTGAGGTTGTTTCCCTCTGTATTTTGTACTCTCATGTTTATATTGGATTTCTCATCTCCTTTGTAGACGTAGGTCGATTGACTGAACCACGTTAAATCTTTGTGTATTTTGGTATATTTCTCGTTGTCTTCTTACTCGTGGTCTTTCGAGGTTTGCTTTGCTAGCTTCCGCGTTTACACCTGCTTATTTACGGTCCTGACACATGATGTACAAAATACATTGATACGCAATATGGTTTTTAATTCAGAAGGCTTCAAGTGGCATAATAGGCTGGGACATCCCTCCATGAAGGTGTTGAAAAGTTTGTCTTTGATTAAAGGAGGTGAAGATATAAATGAGTGTAACAATTGTCCAGTTTGACTTACTTCATTTGGATGTATGGGGACCATATAAGAGTCCTACACATGTTGGTTATAGATATTTCCTAACAATTGTTGATGACTATTCAAGGATGACTTGGTTATTTTTGATGAAATTCAAAAGTGATGTTTTCCAGATATTACAGTATTTTTTTGTCATGGTTCAGACTCAATTCAATAAAGCTGTTAAGAAGATCAGGTCGGATAATAGGACTGAATTCTTCAATAATGAATGTAAAACATTGTTTGAAAAGTTGGGAGTCATTCATGAGAGTAGTTGTCCTCACACTCCACAACAAAATGGGGTAGTAGAGAGAAAACATAGGCACATTCTTGAAGTAGCAAGAGCTCTAAGATTTCAAGGTTCTTTGCCAATAAGATTTTGGGGAGAATGTGTCTTGGCAGCAATATATCTAATTAATAGAATGCCAACTAGTGTTCTAAATGGACAGTCACCTTTTGAAATGTTTCATGGAGTACAGCCTGATCTAAGTCACTCGAGAACAATTGGTTGTCTTTGTTATGCAACTAAACTTGTCAAGGATGACAAATTTTCAACCAGAGCTGATGCATGTGTGTTCATGGGATATTCTTCTACTAAAAAGGGTTGTTGTTTACAGTTTAAACCACCAGAAAATGTTGGTAAGTAGGGATGTTGTTTTTAAGGAAGATATGTTTCCATTTGCAACAAAGAAAATGGACAAAGATGTGCCATTATTCAATCATCAACATATTACTACAGATTCTCAAAGTGTGGAGGATGTTATAACAGTCCAAGAACCAGTAGTGAATGATGATACTTTGGAGTTTACTGAAACTAAAAATTCTGAAGAAGTTGAGTTAGAGGATAATTTGGTACCTAATGTTCCAGTGGTAGCAGCTATAGCAACCAGACATTCAGAGAGGTCAAGTAATCCTCCAGTTTGGTTAAAAGACTATGTTACAAATGTTTCTGATCATCCTTATTCCATGACTAAATACGTAGCATATGATCATTTGTCTACTGGATATCAATCTTTTCTTGGTCAATTTTCTGAAGAAGTAGAACCTAGAACTTATGAGGAAGCAGTGAGGAATCCTAAGTGGGTGGAAGCAATGGAACAAGAGATTAAAGCACTAGAGGATAATGGTACATGGCAGATCATGAAACTACCTGAAAGAAAATCTGTTATTGGTTGTAAATGGGTATTCAAAATTAAATATAAAGCAGATGGGATGGTTGATAGATACAAAGCAAGATTAGTTGCTAAAGGGTATAATAAAAAAGAAGGGATTGATTATCAGGAGACCTTTGCTCATGTTGTGAAGATGGTTACTGTGAGAGCCATTATTGCTTTGGCATCCATAGAGGTCTGGCCAATATTCCAAATGGATGTGTTTAATGCTTTTTTACAAGGTGATTTGTATGAAGAAGTCTATATGGAATTACCTAAAGGATTCAAGGGTGCAGAGCAAAATTGTGTGTGCAAGCTAGTCAAGTCATTGTATGGTCTAAAGCAAGCCTCAAGACAATGGAATGCTAAGCTTACTGAGACATTATGTAAATCTGGATATACACAGAGCTTTTTGGATTACTCATTGTTCACTAAGAGGAGTGATACAGGGATGGTAATATTTTTGGTTTATGTTGATGATTTGTTGATCACAGTTAGTGATCCTGTGTTAGTTAAGGCTACTAAACAAGTGTTGCATAATCACTTCAAGATGAAGGATCTAGGAGAGTTGAAATATTTCTTAGGAATTGAATTTTGCAGATCTGAAAGTGGTATAGTAATGAATCAAAGGAAATATGCATTGGAATTAATTTCTGAGGCTGGCCTTACAGGAGCACAACCTGTTTTTACTCCTTTGGAATGTAATATAAAGCTCACTTCAGCTGCATATAACACAAGCAATGCTGATCCTTTTTTCCTTGATGTAAGTAGATACCAAAGAATGATTGGTAAACTGCTTTACTTGACTAATACTAGACCAGATATTGCATTTGCAGTCAAGAATTTGAGTCAATTTATGCAGCAACCTAAACATTCACACTGGAATGCTGCTTTGAGAGTGATTAAGTACATTAAAGGGAGTCCAGGTTTGGGGTTACTTATGAGTTCACATAAAGATACAAAGTTAACTAGATTTTGTGATGTTGATTGGGCAGCTTGTCTCAGTACTAAAAGGTCTGTAACAGGTTATTTGTTGAAATTTGGTGACTCCCTTATCTCTTGGAAGTCTAAGAAACAGAATACAGTATCTCGAAGTTCTGCTGAGGCAGAATATAGGAGTTTAGCAACCTTGACTGCAGAGGTGGTTTGGGTAACTAGTTTGTTCAAGGAGTTATGTGTAAAGTTGGAATCCTCAGCCATAATACATTGTGATAGCAAAGCAGCTCTTCAGATTGCTGCTAATCCTGTGTTTCATGAGAGGACGAAGCACATCGAAATAGACTGTCACTTCATTCGTGAGAAGATATTACAAGGACTAATACAAACCAATTACATAATTTCCAAAGAGCAACAGGCAGATGTTTTAACAAAAGCTCTTGGAAGAACTCAACATGATTTTCTTTTATCCAAGCTTGGATTATTGAATATCTTCAATACATCCAGCTTGAGGGGGAGTATTGGAAATTAGTTAGTTGTTACATTCAATTTAGTTAGTTAGTTTGTATAGTTAGTTACATTGATAAATGTGTAGTAACTAAATTCTGTTTTAGGATACAAGTATATATATACAGAATGTACCCTCTTCAATATCACAATGAATATTAAAGTTTGAATAAACATTTTCTTTTCCTCTCAACTCTTCTTCCTCAAGGCTCTTCTTCCTCACGAATCTTCTTCCAAATTGAAACAATTCCAAGAGTAAGAAAACTTTTGGCATCATTTTTTTCCCTGTTGCCATCAATTCTCATACACAAGACGCACTCCCAAACCTTTGACCACTACATCCGTATGAATGTTATAAGTACAGACGCCAACCTCAAGCTGAATGAAGTTATTAAAACTATAATCATCATCCTTGAGCTTCCTATACGGATGAAGTGGTACGTGGGCTAGGAAAGTATTACCTAAACCAATAGGTTTTTCACTTCCTATTAAGCCTAAGCACGTACTAAATTTGCGCGACAAACCGTCATGGCTAGTGAACCTAAACCACATCGCAAGTCCTTGGAAAGTTTTTAGGCATTTGACATTATGAAAACTGAAGGGATCATCCGACTTAAGTTTCCGTAAAATGAAAGGAGTCATCATGTCAAAAACAACACAAATAGCTATCCCCCTGAATGTGGGTGTATACCAATTTTTGGGCAGGGCCACTGAGATTGATTCAGTACCCGAGTTCTTGTATGTAAACCACTCGGGAATCTCCACACCAGGGATGTACATACTAAATGAGCCATTCATGAATAGTACCTGCATGCACCGTGAAGAGAATGTTATTTGCCAAGATTCATATGTGATATAGTAGAGTTGTGGCTTGGAAGTGTACTTACCTTGTGCATCTGCTTCAACAATGAAACAACCACGGAGGCGTGCTGTTTATTTTTTACAAGTTGATGACATTTTGTGAATGAAACTTCACCCAACATTGGATATTTGGTTAGCTGATCAATGCTAATCAAAGATGTGCATTCATCAGCATATATCTCTTTTATACTTGGAGGAAGTTCTGGTAAACTCTCAAGTCTCCTACAACCAGCCAATGCAAGGGCTTTAAGTCGAGTGAGACGACTTATTCTTGCAGCCACAATATTGGAAAAATTGTTACCATCGAGAATCAATCCCTCCAAAGACGGTAACAACCCAAGATTACTTAAAATGCCTTCATCTGAAATGTTGCATTCACTAAGATCCAACATGATCAATGAACAAAGACCCGACAAATTCTGAAAATTTACACCCATAGACTCCTGGCCACAACTTGAGCTACTTACTTGTGAACTGAAAGCAGTACATCCACGGAGATATAAATGTTTAAGGTTTTTAAGAAGAGACATAGAGGACGGAATTGTTTGGATGGCTGTGTGAGTGCAGTGGAGCTCCTCTAAACCAACTAAAAGTCCCAAATCATCTGGTAAATTTTTAAGTTTTGAGCATCCGGACACATCGAGTGTTTTCAGACATTTCAACCTAAAAATACTGCTAGGTAGACTTTCAAGATGCTTGCAGTAACTTAGATTTATTACACCAACTCCTGAAAAGTTCTCAACTGATGCAGGTAGTTCACTCAAAGCAGTCGCTCCCAAATACAGTTCTGCTAAACGATTCATTTTCTCTTCTATTTCCGGGAATGTTCTTAACTTTGAGCAGCCTGAAAGAACGAGAATTTCAAGCTTTTCCAATCGAATACTCTTTGGTAGGGTCTTTAAATTTCTACAGTTCTTCAGATTCAGAAAGACTAGCTTTCCAAGATCTCCAATAGAAAAATTGATTTCTACCAAACTTGTGCATTCTTCAAGGACCAGTCTTTCAAGATTAGGTGTAACGGAAAAATCTGGCATCCTTATTAGCTTCTGTGAATGGCTAAGGTTCATGTACTTCAGTTTTCCTAGATCCTTTGAGGTTCTCCAAAGTTGTATGATGCGGCTTTTTTTCAATTTCAAACTAACAAGTTGATCTCCCTTAAAGCTATTTGGCAGACTTTTCAAAGGATATCCATGCCAATCAAGCCACCTCAACTCATCAGGAAGAAACTCAGGTCCCTGGCAAACATATGCATTCCGGAATTTGAGAAACCTCAGACTGGTCATCTGCATGAAGGCCTTGCCACCAAAATTAACTTCTTCTTCATTAGTCAGGCGCAGCGAAATGCCTTCGATCTTGTCAGTGCCCTAATAAGCAAGAGTATTAAAGGCGGATGCGAAAAGGAAAATAATGTAACAAGGAATAAGTTCACAACTACGTACAAAATTTCTTTCTAGTACAGGACAAATATCTTTGCGCTTCCACAACCTACTACATATTCTTGGATTGTAAGAAGCTTCCCGACGAACAATGTGCCAGCCCATTTCTTGTATCAATTGGTGTATTATAACGCGACCTTTTAATATAGTGATCAAACATTTCTCCATGAGAACTTTTATCCCAATGACAGGGCTAAAATGAAAACTCTCGAGTATTCTGGTCACTGAATCTTTCCTCTTCCCTGAAAAGAAGCATGCAATGTCTAAGAATATCTTTTGCTCAATATTGTTGAGACAAGTGAAACTTGGTTCGAGTTTCTTCAGAATTTCATTTTCTGGGATTCGTTTCAAACGCTCCACTTCACTTAACCATTCATCCAAACCTCTTCCATACAAGAAACTGCCAAGTACTTTCAATGCTAGGGGGAGTCCACCGGTATGCTCTATCACTTGAGCTGATAGATCCTCAAATTCTTTGGTAGGGTGGTTTTTCTTGAAAGCATGTTGTTTAAAAAGTTGTAAGCTTTCATAATTGTTTAAAGTTCCCATTCTGTATATCTTTTCAGTCTCATACTTAACAAGCAAGTGTTTGTCTTTGGTTGTTATGATGATTCTACTTCCATCACCAAACCATTCACGCTCCCCGGCTAATGCATCTAACTGTTCTATGTGATCAACATCATCCAGAACAAGAAGAACCTTTTTGTACCGTAGTCTTTGTTTTTGCATATTAGCTCCTTCAAACGAATCATTGATCCTTAGTTTCTTTACAACAAGGATCTCAGAAAGAAGTATCTCTTGCAAGCGCTCAATTCCCTGTTTTGCTGAACGGTCTCTGACTTCGTGAAGAAAACATGCACCTTGAAATTGACTTCGAATGTTATCATAAATAACTCTTGCAAGAGTTGTCTTCCCCACTCCGCTCATTCCAAGTATTCCAAGGAAGCGAACTCCACCAGACCCGATGCCAAGCATTTTATATACTTGGTGCATGTGTGACTCCATTCCAACAAGATTTCTAGAATTGCTTGCATGTCTCTGACTACCCAATCTAGCCATTATATCTTCCGCAATTTTCTCTATAACTCTAGCTTCATGTCTGCATACAACAACGGATGTCTTAAAAATATGTTTTGCGCATAGTAAAATCTTCATATATAAAAAATGCTTACATTTTTGGTCCTACAAGGATAAGTAATATCTCAGTCAATTGTATAGGAGTTTGTGGCAGAAACAAAAGCAAAATAAGAACGGAGGGAGGTTCCCGAGTAAATCTAGAAAGCAACTAAGGCAACTTCATAGCATGACCCCTAACAGACTATTTCCTATTGTATATATATCCCTCATCTCAGAGGTAATTTTCCAACTCCCCAAGTGTGTCTTCCACCATAGCCACATTTGTTACATTAAATGTGAATAGTTGTAAACCGAGAGACTCCCTCTATAAATTCCCTTATCTGGTTTGGCAGGTTGGGTATATCCATTCCCTTTAACTTGCTTATGATGTAAATACAAGTTGACATTGGATTTTATTAGAAAAGTAAGAACAGAAATGTACGATAATTCTATTTAATGAAAAAGGGAAAAGGACCTCTGATGAAAAATAGAAATGAACAAAAGTATTCAGAGTAACTTATTAACATATGTCGATGAGTTTGGTTTCATAATCGATACTTACCCATTGGAAGTATTTGGCATATCCCAGCCAGAAATATTAGCTGCTTCCTCCAGTGCTGCCCTCCATTTTTGCACCTTGTCCTCCTGGAACCGGGCTTCATGTTTGCTAAATGCTTCTCCAAATATCATTTTTTGTTTCCTCACTGTTGATGGATCTACATCATAGAACACCGGAACAACAATTTGTCCTTTCACATTCTTGCACTCCATGATCTTCGTCAATTCATCTAAACACCATGTTGAATCAGCATAGTTTTTAGAGAATATGATCAAAGCTATCCTTGACTCTTCAATCGAACTCTCGAGTTCCGGTGAAATGAACTTTCCTTTCTCTAGTTTTTCGTCATCCTTAAAGGTGTAAATGCATTTTTGTTCCAGAGCAAGGTAGAGATGGTCAACAAATGTTTTGCGTACATCTTCACCTCTGAAACTTAAGAAAACATCGTAACTCCATCGAATGATTTCTGGGGATGGAAGCACTGAACTTTCCTGATTCATCTTCACTATAATTGCTTTAATTCGCCTGCAAGAGAATAAAACAAGAAAGTGGAAGAGGAAATTAGTAATTATATTTACAACAACTTGCATTTATTTATGCAGAGTGATGACTTAGCATGTCATATGATAACAATTAACAAATGCTAGTGGTCAAGAAGTTGACTTTGTAAAATATATAGTATATAGTGAAATCTATGGTATCTTTATCAACACCATCTACAAATGCATTTGTTAAGCAACTTCGCCTGATACATATTTTAAGGTTCAATTGATATGGACTGGAAATACTATTTTATTTGGTATGTTTGGTTTGGTTTTTTATTAATGAGAAATGCTAAAATATGCCATTTGAACTCAGTAAAAAGGCTCATACATGCCATCCATTTAAAAAGTTTAACTCATTCATGTCATTACTGAGAAAAGATATATTCATGCCATTATTTATTAATGGAAAGCAACTTCGATTCTCCAAAACCATTTTTTACCCGTGGTCAATTATGATTTGACAACGTCATTAATTAAATTATTTTGCTTAAATATACCATTAAACTTTGAGAAAAGATTCATCGGTGACCTGGCTGATGATTCTCCCAATTCCAGCATCTCCACCATTAGTTCTTTGAATTACCATTTTGCCCCTACTGTTTCCTCTCCCCTCACTTGCCCTTCTTGCTCCCTTCCCCTTCTTCTCCAAAAATGTAACAAATCCGACTTGATCATTATATTATGGGAAAAGGATCTGATATACCCCTCAACTTTGTCATTTAGAGCTGATATACCCCTTGTTATGAAAGTGGCTCATATATACCCCTACTTGTAAACAATCTAAATTTTTATTATTTTTTTCTAAAAAATATAATTCCATATGAGTAAATTTAATCCTCGTCAAACATATTTTTTTTGACTTTTTTTTGTTTCAATGACTAATTTATAATTATTATTTTGATAATCAAATTTATTTATGTTTCACTAATATTCTTGTAAAACTTATTGTAGATGACCAAATTTTTTTTTGAATATGAAATTAAATTAAATACACACAAAAAAATAGTTTTTTCTTCTTCTTTAAACTAAGGAATGAAAGAAAAAAAATAAGAATAAGAAACTCAAATAATTATAAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTTATAGAAGAATCATATATACCACTAAATAATTTTTTTAAAAAAATTATAAGTAATAAATATAAATTTAAAACTAATTATTTAAATTCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGTATATATGAGCCACTTTTATAACGAGGGGTGTATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCTTATATTATTAAGAACGGGAACATGATTATAACTTTGAATAGTAATTACAACTCGAAAACTACTGAGTTACAACGAGATATTGAAATTACAAGTAAATAAAGGTTAGAAAATATTTATATAAGACTTCGGAAAGAAGATGAGAGGAATAGACAGTTTCTTCACAATACATATGATTTCCCAAATCGAAGATGATAACCATATAAACTCTACTCAACCTGAATCCCAAGCAAATCTAGTATTGAACTGTCTAATTCTTGGACCTCTTTATGCTTTGGCCCTAGGCCCAACAACTGTGGGTGGCAATGGTCCTTTGGTTCCAATGAGGATCAATTATGTTAAACTCCAGAATTTGGACTCTCAACACCATTATGGTGCATTCGTCTTCATCAACAAGCCCATGAATCCACAAGAATATATTGGTTATTTCTGTTTCAAATGTATGAAGTTTCCATTGAGGATTGTGTTAGGACCGGAAATAAGTAGGTGTAAACGCGGAAGCTAGCAAAGCAAACACTCAAAAGACCACGAGTAAGAAAACAACGAGAAATATACCAAAAGACACAAAGATTTAACGTGGTTCGGTCAATCGACCTACGTCCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAAAATACAGAGAGAAACAACCTCAACCAATTCACTCGGAATGCATGGGAGGTTTACACAAATGATAGCGTATCAAGCTTGTGACCCATAAATTCTCCCCCTAACCAAAACTCTCAAAGCCTTTAAGACTACATTGTGAATGCTGATTAAGTTAGAAGGAACAAATCTCTATTTATAGAGTCCTAAACTTTTTCCTACTAGAAAAAGGATTAGTCAATCCAAAACATTTTCCTAAAAGGAAAACCTATTTATGGTAAGAAATCAGGGCAAATAAAACCCAACAGATTGAGATGAAGAAGATTGGATAAATTGGTTTTGGGGTTTAATTGTTACGTCTTTTGTTTAGTTTAGAGGGTTGGATTCGGTTAAAAAAATGGAATTGGGTAATTTCACATAGTCAAAAGTACATTAATGATGTTCTTCAATTTTGTGCTTATTCAAATAAAAAGCTATTGACTAGAGATGGAAAATTGAGCCAGCAAGTAGGAGTGGCCTAAAGCCGACCTACTATAAGAGTTGTTAAACCTGCATGTCCACAAAGGGGTTAGTGGTTTACAAGAAGATATTGTTATGAGGTGAAGCTGATTAGGATACGATCAGTTGTTCAATATAGAAAATTCTAAACTTGCTTTCTGAACCTTTTCCGATAAATAGCACAATAAGCTTACTGCGCACTACCATTTGAAGTACCTAATGCAAATGCCGGCACTTAAAACACATGTTAAGCAGCTACACTTCAACAGTATTATACTTCTTTTCGCACATGAATTGAGAAGTCTCTACATGATAGTAACATGAAGCTCAAAAATTTAATATAGAAGTTACTGAACATTACATTTCATGAATTGTAATCTCATAAACCTTAAGTTATGCTAGAATTGAAAATGTTGCAACATTTGACATTATGCAATCACAAATTGGTTCCTTCAGAGACAAAACCTTAAGCATATTGTTTACCTTGGTCCCGATAAAACTGAAGGAATTTTTGAACTGATAATGGATTCCCTCTGTTGGTTGCCTGCCCCAATCTCAGGTACGTGTGTGAAATCATAATCCAAGTTGGTTTCAACAGTCACCAAACCTTCCAATGCCTTAACCACCAATGACATGGAAGGCCTCTTGGAAAAATCTCCCTGTAGACACCATGCAGCGAGGCTCATCATTTCGGTCACTGCTTCCCTGTGGAGCTGCATATCTTCGTTGTTTTTGTCAACCATATCCATGGGCTGCTCTTGTTCCGCTTTTCTCCTAAATACACTTAGCAAATGGACATCTTCTTCATCAGCTTGGGACCTATCCAAATTCTTTCGCCCACAGAGAATTTCCAAGAAGACTATTCCAAAAGCATAAACATAAACTTTCTCAGTGATTACGGAGCTCAACCATTCAGGGGCTAAATAACCCCGTTTTCCTCTCATTCTAGTCAAAACGTTGCTTTTGTCTTTCTCAATTAGCTTCAACAACCCAAAATCTGATATCTTGGCATTGAGATATTGATCCAGAAGGCTGTTTTGTGGTTTGATGTCCAAATGAATTATCTTTTGGCTGCAATCTTCATGTAGATACGCTAACCCTTTGGCGATATCTGATATTATCCTCTGCCTTGTGCTCCCATTTTCTCGGTTTTCATGTATAATCCACCTATCCAGTGAGTATAATTGGGGAACCCTTCTGCTAGCCCAAGATCGTTAACTAAGATCGGAAGATTCAACTAAGGAAGAGGAAGCTAGAAAGGAGAAGGAATATTTTGAACAAGAAAACTTTGATATAGAAGAAGACTAGTTGATTTGGATTTTGGGTTGCTTACAAATGTACAAGACCATCCATATTTATACTTGTTCATGGATGATTCTAGAAATTCTTGTAGATACTTCTACAAAGAAAATTCTAGTGATCTTTATCTTCTACCCTAGAATATCTAGATATTTTTTATCCTAGATATTATCGTACACTATTCTAGAAACATTACTAGAACAATCTATCATTCCCAAAATCAACTTTATTATTTTTCACAATCCTCTGCCTTGTGCTCCATGTAAGCCCATTTTCTCAGTTTTCATGTATAATCCACCTATCCAGTGATCCATTCACCATGTACTCATAGATTAGAAGCCTGTGGCATTTTTCAGCACAAAATCCGATGAGTTTTACCAAGTTGATATGGTGAATGCCACCGACCGCCTTAACTTCTGTTAAGAATGATTCCTTTACTTGACCTACACCATCCAGATGCTTCACAGCTATTTTGGTGCCATCTCGCAGTGTTCCTTTATAAACAGAGCCAAATCCTCCTTCCCAAGCTTACTACTAAAATCTTCTGTAACTACTTTCAGCTCATTGTAAGAGAATCGAGTTAGAATTCCTGGTAAGATTGGTTCCAGATCAGGAAAATCCGCAGCCTTTCCATGTATCCTCTTTTGGAAGATAAGAAAGCAAGTAGCTATGCTTAAAATTATCCCAAAGAAATGTGCAAGAGTAGATCCAACAATCACTTGGAAAGGTCTTGATTTCTTTCTTCCAGGAATGATTAAAGACTGATTCTGCACCTTAAGAAATACTGTCTTTTCTCTTCCTTTTCTGTTGTTGTCTATGAGAGAGAAGACTTCATTCAGTAACAAACAGGTCCCTCTTCGATTCAGATCCCAATTATATTCAAAGATAGCAGCTTTGCATGAACAGTTACTCAAACAGGCCCTTTTGCAATCTTCCAACTCTTTGTCCTCAAAGCCAAAATATGCTCGAACTTGGTTCATGATTATACGGAAATGAAAAATATGCAATATCCTTGAGCTCTATGAAACTATGGTACTGCAAGAGTTGCAGTAAATGGAAGTCAGCTGTGAACATCCAAGATCTGGTTTCCTCTCAGAAGATGGCCTGAAGAAATTTTCCTGTGGTGGACAAGCACATTGCCCATTATTTGTACAGATGCTATATCTTCCACACACCATTGGATACCCACAGTTTCCTACACGTTCCGCTGTTATGTCTAGTTCATTCCAATCCATTACTGACCATTGGTATACCTTTAAATGTCCATTAGGCTCAATCTTCACGAATTGAGCTGTCGAATTAGTAGGATGTAAAGCAGTAAAGGTATCTCCATCAAAACTGAAATAAGGATTGTCTTCATAATAGGAAGTGTAGTAATATTAAGGCGGGTCAGTATCCGTGTAAGCGGACCAGCCTCCTTTGTAAACAGTAAGAGAAAATAAACCTTGACTCGAATTGTCTGATGAAACACTAGCTGTGATCTTCCGCCCAGAAACCAAACTCTGCTCTGGGAGCAAAGTATCTGTTGGATGATTGAAAGACTGCCAAATTGTTTGATTGTCTTTGTCAAAGAGGACGAGATTCCCCGTTTCTGTCATGTTTAATCCAGAAACAGATTTGCCAGTAGTATTAGTGGACCAAACAGGAGTGCCATCAGAGTCTGTCAAGACTAAATTTCCATCTTGGCCTAGTTGCAATATTGCGTTAACTTTCACTAGAATGGTTCCTGTTAGCAGACCAAACTAAATGGGGTAATATCTATTATAACGTTATCCCCATCGGATCTGTTGTAGTACATAAAGATACCAAGAAGACATTCGGTGGCATAGTTTTTGCAGTAGAAGCCACAGAGGAATCTTGAGCCAGCATTTTTCGCTCAAGTATGGGTGTTGTCCAACCGAAATAGTTGGCATAGGCTGTGGAATTAAGAACAACTGATGGCCTGTTGATCCGGAAAGAGGAAAGCCCAGAAAGCCGAAAGAGTGGTGTTGTAGTCCAATATAGGTTGTGATATAGCAAACCGAGACGAACAGAAGAGGAGATAAATGAAGATAAGGATAGGAAAACAGTCTATGTTCTGCAAACATTGTTTCCTAAACAAAACAAAAAAAATATGTATGGAATCTTGTTATGCATATTGAAGAAACAAATGAGCATACAAAATTCAAAAATCAGTTTGCATCAACTACACCAATATTTGCTCACTAGAAAGGCATTGTTGGGTTTTATTTGCCTTAAATTTCTTACCATAAATAGGTTTTCTTTTTAGAAAAATGTTTTGGATTGACTAATCCTTTTTCTGGTAGGAAAAAATTTAGGACTCTATAAATAGAGGTATGTTCCTTCTAACTTAATCAGCATTCACAATGTAGTCTTTAAGGGCTTTGAGAGTTTTGATTAGGGGTAGAATTTATGGGTCACAAGCTTGATACGTTATCACTTGTGTGAACCTCCCATGTATTCTGAGTGAATTGGTAGAGGTTGTTTCTCTCTGTAATTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTTGGTCGATTGACCGAACCACGTTAAATCTTTGTGTCTTTT</genome_strand>
        <mrna_strand>TTCAGAGAGATTCTTTGTGTTGAGACATAAATTTTGCAAAGGAGATTATGGAGAGGAGAAGCAAGTTGTTGAAGATTAAGTGAAGAAGGTGGACAAGTTTA-TTTGTCAGAAATTCAGGCCAAGGGGGAGACTTGTTGGGTTTTATTTGCCCTAAATTTCTTACCATAAATAGGTTTTCCTTGTAGGAAAAGGTTTTGGATTGACTAATCCTTTTCTTGTAGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E212523" ref_strand="+" ref_description="SGN-E212523 	[cLEC-74-E18]">
      <seq>tgatttcagcagtaagcttggggaaggaggatttggctgtgtttatgaaggaacactgagaaatggcactaaaatagctgtgaagcatctggatggtgtaggtcaagtaaaggaatcattcttaacagaagtaaaggcagtcggtggcattcaccatatcaatctggtaaaactcattggattttgtgccgaaaaaacccacaggcttctaatctatgagtacatggtgaatggatcgcttgataggtggattacaatgaaaaaccgagaaaatgggcttacatggagcacaagacagaggataatatcagatatcgccaaagggttagcgtatctacatgaggattgcagccaaaagataattcatttggacatcaaaccacaaaacatccttctggatcaatatctcaatgctaagatatcagattttgggttgtcgaagctaattgagaaagacaaaagcaaagtcgtgactagaatgagaggaacacggggttatttagcccctgaatggttgagctcggtaatcactgagaaagttgatgtgtatgcttttggaattgtcctcttggaaattctctgtgggcggaagaatttggactggtcccaagctgatgaagaagatgtccatttgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="84650" stop="82994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84351" g_stop="84059" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84058" i_stop="83638" i_length="421">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83637" g_stop="83294" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="638" r_length="344" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E212523" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84351" e_stop="84059"/>
          <exon e_start="83637" e_stop="83294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTAGTAGTAAGCTT-GGGAAGGAGGATTTGGCTCTGTTTATAAAGGAACACTGCGAGATGGCACCAAAATAGCTGTGAAGCATCTGGATGGTGTAGGTCAAGTAAAGGAATCATTCTTAACAGAAGTTAAGGCGGTCGGTGGCATTCACCATATCAACTTGGTAAAACTCATCGGATTTTGTGCTGAAAAATGCCACAGGCTTCTAATCTATGAGTACATGGTGAATGGATCACTGGATAGGTGGATTATACATG-AAAACTGAGAAAATGGGCTTACATGGAGCACAAGGCAGAGGATTGTGAAAAATAATAAAGTTGATTTTGGGAATGATAGATTGTTCTAGTAATGTTTCTAGAATAGTGTACGATAATATCTAGGATAAAAAATATCTAGATATTCTAGGGTAGAAGATAAAGATCACTAGAATTTTCTTTGTAGAAGTATCTACAAGAATTTCTAGAATCATCCATGAACAAGTATAAATATGGATGGTCTTGTACATTTGTAAGCAACCCAAAATCCAAATCAACTAGTCTTCTTCTATATCAAAGTTTTCTTGTTCAAAATATTCCTTCTCCTTTCTAGCTTCCTCTTCCTTAGTTGAATCTTCCGATCTTAGTTAACGATCTTGGGCTAGCAGAAGGGTTCCCCAATTATACTCACTGGATAGGTGGATTATACATGAAAACCGAGAAAATGGGAGCACAAGGCAGAGGATAATATCAGATATCGCCAAAGGGTTAGCGTATCTACATGAAGATTGCAGCCAAAAGATAATTCATTTGGACATCAAACCACAAAACAGCCTTCTGGATCAATATCTCAATGCCAAGATATCAGATTTTGGGTTGTTGAAGCTAATTGAGAAAGACAAAAGCAACGTTTTGACTAGAATGAGAGGAAAACGGGGTTATTTAGCCCCTGAATGGTTGAGCTCCGTAATCACTGAGAAAGTTTATGTTTATGCTTTTGGAATAGTCTTCTTGGAAATTCTCTGTGGGCGAAAGAATTTGGATAGGTCCCAAGCTGATGAAGAAGATGTCCATTTGCTAA</genome_strand>
        <mrna_strand>TGATTTCAGCAGTAAGCTTGGGGAAGGAGGATTTGGCTGTGTTTATGAAGGAACACTGAGAAATGGCACTAAAATAGCTGTGAAGCATCTGGATGGTGTAGGTCAAGTAAAGGAATCATTCTTAACAGAAGTAAAGGCAGTCGGTGGCATTCACCATATCAATCTGGTAAAACTCATTGGATTTTGTGCCGAAAAAACCCACAGGCTTCTAATCTATGAGTACATGGTGAATGGATCGCTTGATAGGTGGATTACA-ATGAAAAACCGAGAAAATGGGCTTACATGGAGCACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGGATAATATCAGATATCGCCAAAGGGTTAGCGTATCTACATGAGGATTGCAGCCAAAAGATAATTCATTTGGACATCAAACCACAAAACATCCTTCTGGATCAATATCTCAATGCTAAGATATCAGATTTTGGGTTGTCGAAGCTAATTGAGAAAGACAAAAGCAAAGTCGTGACTAGAATGAGAGGAACACGGGGTTATTTAGCCCCTGAATGGTTGAGCTCGGTAATCACTGAGAAAGTTGATGTGTATGCTTTTGGAATTGTCCTCTTGGAAATTCTCTGTGGGCGGAAGAATTTGGACTGGTCCCAAGCTGATGAAGAAGATGTCCATTTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 	[cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="95842" stop="94660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95542" g_stop="95358" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95357" i_stop="95279" i_length="79">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95278" g_stop="94946" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="515" r_length="331" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95542" e_stop="95358"/>
          <exon e_start="95278" e_stop="94946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTT-GTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCGCGTTCCGACACCAAGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCTGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATTGAGTAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAGTCTTGAAAGACGATAATATATTCAAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTATCTGATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAG-A-ATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATG...............................................................................GATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGC-AATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E349296" ref_strand="+" ref_description="SGN-E349296 	[cTOS-2-P10]">
      <seq>gaaaaactggcagaaatgacggaccccacgacggaccatcatgggcacgacggaccgtcgcagggtctcatttcaaaacacttaggaaatctgaaattgggtactgaaaatcgactctctgaacttcgtaacggaatggcaagacggaccgtcacaggcgtgatggaccatcacagagtcttcagtgaaaatccagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacaacgggctgtcacaggctgcgtaaatcccagtctgagtcggaattcctcaattgttttaagggacgtttttgactattcctgctttaattataaagttagtgggttaatgttaataagtctaattacttgggggttaaaagaggtaaccttaagttaattagtgggttattattgccatattttattcttaattatatactaattagggtaaaagaaagagggtttgaataaagaaaatagaaagaacaagagaaagagagagaaagtcgaacgagaaagaggatcgaacgagaggaaaaaacacaaagcttgggaaatcacttgcttgatcacgaatcttcggtggaggtaggttatggtttctcttacgatattcgtagtaagctcttaatagcgaataatatgtattgataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="96608" stop="95351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96308" g_stop="95651" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E349296" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96308" e_stop="95651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACTGGCAGAAGCGACAGACCCCACGATGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGCGATGACCTGCAGGACGGACCGTCGCAGGCACAACGGGCCGTCACAGACTGCG-AAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGATGTTTTGGACTATTCCTACTTTAATAATAAAGTTAGAGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGTCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAACACAAAGAATAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAAAACACAAAGCTTGGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATT</genome_strand>
        <mrna_strand>GAAAAACTGGCAGAAATGACGGACCCCACGACGGACCATCATGGGCACGACGGACCGTCGCAGGGTCTCATTTCAAAACACTTAGGAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAAGACGGACCGTCACAGGCGTGATGGACCATCACAGAGTCTTCAGTGAAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACAACGGGCTGTCACAGGCTGCGTAAATCCCAGTCTGAGTCGGAATTCCTCAATTGTTTTAAGGGACGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATATTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGG--AAAAAACACAAAGCTTGGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAGCTCTTAATAGCGAATAATATGTATTGATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 	[LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="96712" stop="97489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97012" g_stop="97188" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97012" e_stop="97188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAAACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 	[TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="98197" stop="99499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98499" g_stop="99199" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="712" r_length="700" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98499" e_stop="99199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCGGCGGTAGTAGCTAGCTAACCCAATAAAGCTCCTTATTTCTGACACGTTAGTGGGTCTTACCCAATTCTTCACTGTCTCAACCTTAGAAGGATCCACCATCACTCCTTACTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCATTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAACACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGGGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>AAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 	[TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="98197" stop="99382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98499" g_stop="99082" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="596" r_length="584" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98499" e_stop="99082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCGGCGGTAGTAGCTAGCTAACCCAATAAAGCTCCTTATTTCTGACACGTTAGTGGGTCTTACCCAATTCTTCACTGTCTCAACCTTAGAAGGATCCACCATCACTCCTTACTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCATTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAACACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGGGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>AAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 	[cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="98197" stop="99312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98499" g_stop="99012" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="526" r_length="514" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98499" e_stop="99012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCGGCGGTAGTAGCTAGCTAACCCAATAAAGCTCCTTATTTCTGACACGTTAGTGGGTCTTACCCAATTCTTCACTGTCTCAACCTTAGAAGGATCCACCATCACTCCTTACTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCATTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAACACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>AAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 	[TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="98258" stop="99536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98558" g_stop="99237" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98558" e_stop="99237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAACCTTAGAAGGATCCACCATCACTCCTTACTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCATTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAACACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGGGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTGTAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 	[cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="98258" stop="99216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98558" g_stop="98916" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98558" e_stop="98916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAACCTTAGAAGGATCCACCATCACTCCTTACTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCATTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 	[cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="98707" stop="99965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99007" g_stop="99665" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99007" e_stop="99665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGGGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTGTAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAGAAACTTATGGACCACCGAAACTGACTCAATCGAAGGTACATGGGTAGTGTCGTCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGTTTGGCTAACGTCACTGTTTTAGAATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAATTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 	[cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="102152" stop="98795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101852" g_stop="101666" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101665" i_stop="99573" i_length="2093">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99572" g_stop="99059" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101852" e_stop="101666"/>
          <exon e_start="99572" e_stop="99059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGCTTACGAGGCTAGGTTTCACGCACTATCCAGATATGCCACGCAACTTTGTTTCAGTCCACAAGAGAGGATTCGCCGGTTTGTGAAGGGGTTGAGATCAGAGTTGCGAATTTCGGCCTTACAGGTAGCGGCTACAGCAAAATCCTTCCAAGAAGTGGTAGACTTCGTGATAGAGGTGGAAGGAGTGAAGCCCGATGACTTCACCTCGACATCGACATCAAAAAGGTTTCGAAAGAGAGGTGAGTTTAATGGTTCTTGCTCTAGAGGACAAGGTTCCGGAGGTTACGCAGTTCAACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACTGCATGGGCTCAGCTCCATGACGTTGCAACATTATCTGACGTGGCTCTCCTGAAGCGGCTGCGGAATGCCGCCGACTGGTTTGGCATACTTGCCGCACAAACACTTGCTGTACGCGCCGCAGTTACGGGTTGTACAAGCGGAAAGAGATTGCGTCTTGTCGATGGAACAGCAATCAGTGCGCCCGGGGGCGGCAGCGCTGAATGGCGACTACATATGGGATATGATCCTCATACCTGTCAGTTCACTGATTTTGAGCTAACCGACAGCAGAGACGCTGAACGGCTGGACCGATTTGCGCAAACGGCAGACGAGATACGCATTGCTGACCGGGGATTCGGTTCGCGTCCCGAATGTATCCGCTCACTTGCTTTTGGAGAAGCTGATTATATCGTCCGGGTTCACTGGCGAGGATTGCGCTGGTTAACTGCAGAAGGAATGCGCTTTGACATGATGGGTTTTCTGCGCGGGCTGGATTGCGGTAAGAACGGTGAAACCACTGTAATGATAGGCAATTCAGGTAATAAAAAAGCCGGAGCTCCCTTTCCGGCACGTCTCATTGCCGTATCACTTCCTCCCGAAAAAGCATTAATCAGTAAAACCCGACTGCTCAGCGAGAATCGTCGAAAAGGACGAGTAGTTCAGGCGGAAACGCTGGAAGCAGCGGGCCATGTGCTATTGCTAACATCATTACCGGAAGATGAATATTCAGCAGAGCAAGTGGCTGATTGTTACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAGTTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAGAATGGCTGAGGTGATGGGCAACCTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGGGTGAGAGGGCCCATTGCTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAAATTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTGGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATTCTAAAACAGTGACGTTAGCCAAACCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCATGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGACGACACTACCCATGTACCTTCGATTGAGTCAGTTTCGGTGGTCCATAAGTTTCTAGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTCTGTATTGACCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTACAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 	[cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="98776" stop="100137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99076" g_stop="99837" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99076" e_stop="99837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTGTAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAGAAACTTATGGACCACCGAAACTGACTCAATCGAAGGTACATGGGTAGTGTCGTCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGTTTGGCTAACGTCACTGTTTTAGAATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAATTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 	[cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="98776" stop="100036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99076" g_stop="99736" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99076" e_stop="99736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTGTAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAGAAACTTATGGACCACCGAAACTGACTCAATCGAAGGTACATGGGTAGTGTCGTCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGTTTGGCTAACGTCACTGTTTTAGAATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAATTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 	[cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="99179" stop="100105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99479" g_stop="99809" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99479" e_stop="99809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGTTTGGCTAACGTCACTGTTTTAGAATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAATTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 	[cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="99386" stop="101893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99686" g_stop="100147" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100148" i_stop="101496" i_length="1349">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101497" g_stop="101593" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="559" r_length="97" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99686" e_stop="100147"/>
          <exon e_start="101497" e_stop="101593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAGCAATGGGCCCTCTCACCCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGGTTGCCCATCACCTCAGCCATTCTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATACTGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAATCCAGCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATCGCAGACGGTAACAATCAGCCACTTGCTCTGCTGAATATTCATCTTCCGGTAATGATGTTAGCAATAGCACATGGCCCGCTGCTTCCAGCGTTTCCGCCTGAACTACTCGTCCTTTTCGACGATTCTCGCTGAGCAGTCGGGTTTTACTGATTAATGCTTTTTCGGGAGGAAGTGATACGGCAATGAGACGTGCCGGAAAGGGAGCTCCGGCTTTTTTATTACCTGAATTGCCTATCATTACAGTGGTTTCACCGTTCTTACCGCAATCCAGCCCGCGCAGAAAACCCATCATGTCAAAGCGCATTCCTTCTGCAGTTAACCAGCGCAATCCTCGCCAGTGAACCCGGACGATATAATCAGCTTCTCCAAAAGCAAGTGAGCGGATACATTCGGGACGCGAACCGAATCCCCGGTCAGCAATGCGTATCTCGTCTGCCGTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGTTAGCTCAAAATCAGTGAACTGACAGGTATGAGGATCATATCCCATATGTAGTCGCCATTCAGCGCTGCCGCCCCCGGGCGCACTGATTGCTGTTCCATCGACAAGACGCAATCTCTTTCCGCTTGTACAACCCGTAACTGCGGCGCGTACAGCAAGTGTTTGTGCGGCAAGTATGCCAAACCAGTCGGCGGCATTCCGCAGCCGCTTCAGGAGAGCCACGTCAGATAATGTTGCAACGTCATGGAGCTGAGCCCATGCAGTGACTTCACGTAATGACATCCCCCCGGGGCCGTAAGCCAGCCCCAGACGTAGCAGAGTTGCAGCATCACGAATTTCGCGGCGGCGGGTTAGAGCCCCGGCATTACGTGCCGAAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTTGAACTGCGTAACCTCCGGAACCTTGTCCTCTAGAGCAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 	[cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="99470" stop="102208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99770" g_stop="100147" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100148" i_stop="101496" i_length="1349">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101497" g_stop="101908" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="790" r_length="412" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99770" e_stop="100147"/>
          <exon e_start="101497" e_stop="101908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAGCAATGGGCCCTCTCACCCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGGTTGCCCATCACCTCAGCCATTCTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATACTGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAATCCAGCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATCGCAGACGGTAACAATCAGCCACTTGCTCTGCTGAATATTCATCTTCCGGTAATGATGTTAGCAATAGCACATGGCCCGCTGCTTCCAGCGTTTCCGCCTGAACTACTCGTCCTTTTCGACGATTCTCGCTGAGCAGTCGGGTTTTACTGATTAATGCTTTTTCGGGAGGAAGTGATACGGCAATGAGACGTGCCGGAAAGGGAGCTCCGGCTTTTTTATTACCTGAATTGCCTATCATTACAGTGGTTTCACCGTTCTTACCGCAATCCAGCCCGCGCAGAAAACCCATCATGTCAAAGCGCATTCCTTCTGCAGTTAACCAGCGCAATCCTCGCCAGTGAACCCGGACGATATAATCAGCTTCTCCAAAAGCAAGTGAGCGGATACATTCGGGACGCGAACCGAATCCCCGGTCAGCAATGCGTATCTCGTCTGCCGTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGTTAGCTCAAAATCAGTGAACTGACAGGTATGAGGATCATATCCCATATGTAGTCGCCATTCAGCGCTGCCGCCCCCGGGCGCACTGATTGCTGTTCCATCGACAAGACGCAATCTCTTTCCGCTTGTACAACCCGTAACTGCGGCGCGTACAGCAAGTGTTTGTGCGGCAAGTATGCCAAACCAGTCGGCGGCATTCCGCAGCCGCTTCAGGAGAGCCACGTCAGATAATGTTGCAACGTCATGGAGCTGAGCCCATGCAGTGACTTCACGTAATGACATCCCCCCGGGGCCGTAAGCCAGCCCCAGACGTAGCAGAGTTGCAGCATCACGAATTTCGCGGCGGCGGGTTAGAGCCCCGGCATTACGTGCCGAAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTTGAACTGCGTAACCTCCGGAACCTTGTCCTCTAGAGCAAGAACCATTAAACTCACCTCTCTTTCGAAACCTTTTTGATGTCGATGTCGAGGTGAAGTCATCGGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGGAAGGATTTTGCTGTAGCCGCTACCTGTAAGGCCGAAATTCGCAACTCTGATCTCAACCCCTTCACAAACCGGCGAATCCTCTCTTGTGGACTGAAACAAAGTTGCGTGGCATATCTGGATAGTGCGTGAAACCTAGCCTCGTAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTCTTCCTATCCCTCAAAGTCCGAGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 	[cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="99546" stop="102192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99846" g_stop="100147" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100148" i_stop="101496" i_length="1349">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101497" g_stop="101892" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="698" r_length="396" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99846" e_stop="100147"/>
          <exon e_start="101497" e_stop="101892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAGCAATGGGCCCTCTCACCCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGGTTGCCCATCACCTCAGCCATTCTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATACTGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAATCCAGCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATCGCAGACGGTAACAATCAGCCACTTGCTCTGCTGAATATTCATCTTCCGGTAATGATGTTAGCAATAGCACATGGCCCGCTGCTTCCAGCGTTTCCGCCTGAACTACTCGTCCTTTTCGACGATTCTCGCTGAGCAGTCGGGTTTTACTGATTAATGCTTTTTCGGGAGGAAGTGATACGGCAATGAGACGTGCCGGAAAGGGAGCTCCGGCTTTTTTATTACCTGAATTGCCTATCATTACAGTGGTTTCACCGTTCTTACCGCAATCCAGCCCGCGCAGAAAACCCATCATGTCAAAGCGCATTCCTTCTGCAGTTAACCAGCGCAATCCTCGCCAGTGAACCCGGACGATATAATCAGCTTCTCCAAAAGCAAGTGAGCGGATACATTCGGGACGCGAACCGAATCCCCGGTCAGCAATGCGTATCTCGTCTGCCGTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGTTAGCTCAAAATCAGTGAACTGACAGGTATGAGGATCATATCCCATATGTAGTCGCCATTCAGCGCTGCCGCCCCCGGGCGCACTGATTGCTGTTCCATCGACAAGACGCAATCTCTTTCCGCTTGTACAACCCGTAACTGCGGCGCGTACAGCAAGTGTTTGTGCGGCAAGTATGCCAAACCAGTCGGCGGCATTCCGCAGCCGCTTCAGGAGAGCCACGTCAGATAATGTTGCAACGTCATGGAGCTGAGCCCATGCAGTGACTTCACGTAATGACATCCCCCCGGGGCCGTAAGCCAGCCCCAGACGTAGCAGAGTTGCAGCATCACGAATTTCGCGGCGGCGGGTTAGAGCCCCGGCATTACGTGCCGAAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTTGAACTGCGTAACCTCCGGAACCTTGTCCTCTAGAGCAAGAACCATTAAACTCACCTCTCTTTCGAAACCTTTTTGATGTCGATGTCGAGGTGAAGTCATCGGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGGAAGGATTTTGCTGTAGCCGCTACCTGTAAGGCCGAAATTCGCAACTCTGATCTCAACCCCTTCACAAACCGGCGAATCCTCTCTTGTGGACTGAAACAAAGTTGCGTGGCATATCTGGATAGTGCGTGAAACCTAGCCTCGTAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTCTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 	[cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="101456" stop="102711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101756" g_stop="102474" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101756" e_stop="102474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCTCTCTTGTGGACTGAAACAAAGTTGCGTGGCATATCTGGATAGTGCGTGAAACCTAGCCTCGTAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTCTTCCTATCCCTCAAAGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTCGGTTGACACTCAACATCTGATCGCCACCACATTTTGGCGTTCCCTTGAAACTTATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTG-AAATTTCATGTTGATCATTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGTTTATTTCCAATGGAACATCCATGCTGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTTGTTCATTCTCCCCAT-CATCCCCTTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATTAGATGGGTT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 	[cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="101459" stop="102721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101759" g_stop="102421" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101759" e_stop="102421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTCTCTTGTGGACTGAAACAAAGTTGCGTGGCATATCTGGATAGTGCGTGAAACCTAGCCTCGTAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTCTTCCTATCCCTCAAAGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTCGGTTGACACTCAACATCTGATCGCCACCACATTTTGGCGTTCCCTTGAAACTTATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTG-AAATTTCATGTTGATCATTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGTTTATTTCCAATGGAACATCCATGCTGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTT-CCTCATTCTGCACTTGTTCATTCTCCCCATCATCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 	[cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="103143" stop="102252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102843" g_stop="102552" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102843" e_stop="102552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGACTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCAGCAGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACC-G--GC--CA-GACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 	[cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="103787" stop="102952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103487" g_stop="103252" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103487" e_stop="103252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCTAATTCCCAAATGAGTATGTTGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTATCTGATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTT-TCTTCTTGTTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTG-TTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E349296" ref_strand="+" ref_description="SGN-E349296 	[cTOS-2-P10]">
      <seq>gaaaaactggcagaaatgacggaccccacgacggaccatcatgggcacgacggaccgtcgcagggtctcatttcaaaacacttaggaaatctgaaattgggtactgaaaatcgactctctgaacttcgtaacggaatggcaagacggaccgtcacaggcgtgatggaccatcacagagtcttcagtgaaaatccagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacaacgggctgtcacaggctgcgtaaatcccagtctgagtcggaattcctcaattgttttaagggacgtttttgactattcctgctttaattataaagttagtgggttaatgttaataagtctaattacttgggggttaaaagaggtaaccttaagttaattagtgggttattattgccatattttattcttaattatatactaattagggtaaaagaaagagggtttgaataaagaaaatagaaagaacaagagaaagagagagaaagtcgaacgagaaagaggatcgaacgagaggaaaaaacacaaagcttgggaaatcacttgcttgatcacgaatcttcggtggaggtaggttatggtttctcttacgatattcgtagtaagctcttaatagcgaataatatgtattgataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="105005" stop="103748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104705" g_stop="104048" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-E349296" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104705" e_stop="104048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACTGGCAGAAGCGACAGACCCCACGACGGACTGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGCGACGACCTGCAGGACGGACCGTTGCAGGCACGACGGGCCGTCACAGACTGTG-AAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGAGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGTCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAACAGAAAGAACAAGAGAAAGAGAGAGAAATTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAAAACACAAAGCTTAGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATT</genome_strand>
        <mrna_strand>GAAAAACTGGCAGAAATGACGGACCCCACGACGGACCATCATGGGCACGACGGACCGTCGCAGGGTCTCATTTCAAAACACTTAGGAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAAGACGGACCGTCACAGGCGTGATGGACCATCACAGAGTCTTCAGTGAAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACAACGGGCTGTCACAGGCTGCGTAAATCCCAGTCTGAGTCGGAATTCCTCAATTGTTTTAAGGGACGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATATTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGG--AAAAAACACAAAGCTTGGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAGCTCTTAATAGCGAATAATATGTATTGATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E241959" ref_strand="+" ref_description="SGN-E241959 	[cLED-27-I11]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="103901" stop="105040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104195" g_stop="104740" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E241959" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104195" e_stop="104740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATTTCTCTCTCTTTCTCT-TGTTCTTTCTGTTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGACAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTTCACAGTCTGTGACGGCCCGTCGTGCCTGCAACGGTCCGTCCTGCAGGTCGTCGCAAGGGTCAGAGACTCAATTTCCACTGAATAATCTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATGACAGTCCGTCGTGGGGTCTGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGCTACTCAAAACGACTAAACA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATG-GAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/sgn_ests_tomato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 	[cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="103901" stop="104967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104195" g_stop="104667" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104195" e_stop="104667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATTTCTCTCTCTTTCTCT-TGTTCTTTCTGTTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGACAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTTCACAGTCTGTGACGGCCCGTCGTGCCTGCAACGGTCCGTCCTGCAGGTCGTCGCAAGGGTCAGAGACTCAATTTCCACTGAATAATCTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATG-GAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>89</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2055" PGL_stop="5507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2055" e_stop="2324"/>
            <exon e_start="2539" e_stop="2685"/>
            <exon e_start="5114" e_stop="5507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2055" e_stop="2324" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="2325" i_stop="2538" i_length="214"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2539" e_stop="2685" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2686" i_stop="5113" i_length="2428"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5114" e_stop="5507" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2055" stop="2324"/>
              <exon start="2539" stop="2685"/>
              <exon start="5114" stop="5300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2061" stop="2324"/>
              <exon start="2539" stop="2685"/>
              <exon start="5114" stop="5206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2061" stop="2324"/>
              <exon start="2539" stop="2685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2068" stop="2324"/>
              <exon start="2539" stop="2685"/>
              <exon start="5114" stop="5233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2068" stop="2324"/>
              <exon start="2539" stop="2685"/>
              <exon start="5114" stop="5220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2102" stop="2324"/>
              <exon start="2539" stop="2685"/>
              <exon start="5114" stop="5507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210676" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG : TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG : GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGA</gDNA_template>
            <first_frame> L  F  I  F  S  H  F  F  F  *  F  L  Y  D  I  K  Q  N  L  V  N  P  Q  K  V  F  I  F  F  L  F  F  F  *  V  I  *  V  I  F  V  F  F  G  H  G  R  *  F  I  Q  K  S  I  F  S  *  T  R  R  F  H  R  N  S  T  G  *  C  C  *  F  L  F  F  R  *  *  S  G  G  S  *  H  A  I  T  *  K  K  :  *  E  R  S  K  K  E  S  N  F  S  A  N  N  *  R  *  W  I  K  K  *  R  G  S  L  S  T  T  R  F  L  V  L  E  K  I  W  T  K  T  N  *  R  I  T  L  S  Q  :  G  I  L  S  M  Q  *  L  Q  R  L  S  R  Q  K  T  S  R  A  *  P  P  G  P  H  H  A  S  H  Y  L  L  L  R  T  Q  S  P  N  P  G  R  R  R  R  Q  T  P  P  S  Q  P  P  Y  Y  H  H  Q  F  T  H  Y  L  Y  R  H  R  R  R  Q  *  C  Y  C  G  C  S  H  G  L  Y  R  S  R  Q  I  I  P  R  R  T  R  S  I  C  L  S  T  R  *  W  I  F  R  A  R  R  *  V  R  L  V  F  R  Y  G  N  N  N  Y  V  Y  G  E  Y  V  V  V  H  G  G  </first_frame>
            <second_frame>  F  L  F  S  L  I  F  S  S  N  F  Y  M  I  *  N  K  I  *  L  I  L  K  K  F  L  F  S  F  F  F  F  S  K  L  Y  K  L  F  L  C  F  L  V  M  E  D  S  S  Y  K  N  L  F  F  H  K  Q  E  D  S  T  G  T  P  P  D  N  A  A  D  S  C  F  S  G  D  E  A  A  E  V  S  M  P  S  P  R  K  S :   R  R  G  A  K  K  K  V  I  S  V  P  I  I  E  G  D  G  S  R  S  K  G  E  V  Y  P  P  Q  D  S  W  S  W  R  K  Y  G  Q  K  P  I  K  G  S  P  Y  P  R :   G  Y  Y  R  C  S  S  S  K  G  C  P  A  R  K  Q  V  E  R  S  R  L  D  P  T  M  L  L  I  T  Y  C  S  E  H  N  H  Q  I  P  A  A  A  A  A  K  H  H  H  H  N  H  P  T  T  T  T  S  S  P  T  T  S  T  G  T  A  G  D  N  N  A  T  A  A  V  A  T  D  S  T  V  V  D  K  S  S  P  E  E  P  D  L  F  A  Y  Q  H  D  N  G  F  S  E  L  A  G  E  L  G  W  F  S  D  M  G  T  T  T  T  F  M  E  S  T  S  S  S  M  A  G </second_frame>
            <third_frame>   F  Y  F  L  S  F  F  L  L  I  S  I  *  Y  K  T  K  F  S  *  S  S  K  S  F  Y  F  L  S  F  F  F  L  S  Y  I  S  Y  F  C  V  F  W  S  W  K  I  V  H  T  K  I  Y  F  F  I  N  K  K  I  P  P  E  L  H  R  I  M  L  L  I  L  V  F  P  V  M  K  R  R  K  L  A  C  H  H  L  E  K   : V  G  E  E  Q  K  R  K  *  F  Q  C  Q  *  L  K  V  M  D  Q  E  V  K  G  K  F  I  H  H  K  I  L  G  L  G  E  N  M  D  K  N  Q  L  K  D  H  L  I  P   : G  D  I  I  D  A  V  A  P  K  A  V  P  P  E  N  K  S  S  V  A  A  W  T  P  P  C  F  S  L  P  I  A  P  N  T  I  T  K  S  R  P  P  P  P  P  N  T  T  I  T  T  T  L  L  P  P  P  V  H  P  L  P  L  P  A  P  P  E  T  I  M  L  L  R  L  *  P  R  T  L  P  *  *  T  N  H  P  P  K  N  Q  I  Y  L  L  I  N  T  I  M  D  F  Q  S  S  P  V  S  *  V  G  F  P  I  W  E  Q  Q  L  R  L  W  R  V  R  R  R  P  W  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2113" stop="2324"/>
                    <exon start="2539" stop="2685"/>
                    <exon start="5114" stop="5507"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILKKFLFSFFFFSKLYKLFLCFLVMEDSSYKNLFFHKQEDSTGTPPDNAADSCFSGDEAAEVSMPSPRKSRRGAKKKVISVPIIEGDGSRSKGEVYPPQDSWSWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRLDPTMLLITYCSEHNHQIPAAAAAKHHHHNHPTTTTSSPTTSTGTAGDNNATAAVATDSTVVDKSSPEEPDLFAYQHDNGFSELAGELGWFSDMGTTTTFMESTSSSMAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11943" PGL_stop="6561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11943" e_stop="11623"/>
            <exon e_start="7448" e_stop="6561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11943" e_stop="11623" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11622" i_stop="7449" i_length="4174"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="7448" e_stop="6561" e_length="888"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11943" stop="11623"/>
              <exon start="7448" stop="7285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11943" stop="11623"/>
              <exon start="7448" stop="7302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11938" stop="11623"/>
              <exon start="7448" stop="7126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11938" stop="11623"/>
              <exon start="7448" stop="7217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11938" stop="11623"/>
              <exon start="7448" stop="7303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11928" stop="11623"/>
              <exon start="7448" stop="7197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11791" stop="11623"/>
              <exon start="7448" stop="7123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7350" stop="6846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7350" stop="7006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7318" stop="6669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376733" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7096" stop="6561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306882" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG : GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAAGTGTATTTCCTGAGCTGAGTAGCAATGTTTGTTGTTCATGATATGTGTAGTTTGATAAATTAAAGTAGAACATGGCAAGGTGTGCCCAGAGTTGATTTAAGTGGATGA</gDNA_template>
            <first_frame> Y  F  F  L  L  Q  N  *  I  F  S  V  N  F  Y  Y  L  V  N  Q  E  V  K  L  Q  S  K  S  R  Y  S  F  E  D  G  R  L  Q  R  *  *  *  V  *  L  P  F  Q  A  C  V  D  R  *  F  R  C  G  *  I  *  S  A  F  Q  V  H  Q  K  *  I  Q  F  G  V  *  I  N  Y  W  G  *  I  C  N  Q  K  S  *  Y  *  W  *  S  Y  *  S  S  D  L  G  Y  C  W  S  R  K  :  V  S  C  H  Y  E  C  L  L  S  G  S  C  R  C  F  A  R  I  *  C  Y  S  T  C  Y  L  *  K  R  Q  Q  V  V  E  G  I  E  R  P  Y  *  P  *  H  C  S  H  A  P  R  Q  Q  I  R  S  P  T  S  R  G  C  F  N  *  R  G  *  I  F  G  R  E  G  S  P  I  L  H  G  N  F  C  I  R  S  D  Q  R  *  K  C  V  Y  *  S  S  H  A  D  I  P  D  R  Q  *  E  S  S  R  G  R  G  R  R  C  Y  F  N  R  T  T  *  R  T  D  D  *  Y  Q  R  *  R  I  C  L  E  K  V  W  V  L  F  E  L  G  L  T  *  D  N  S  S  S  F  I  Y  Q  L  *  I  V  I  K  S  M  I  S  S  P  C  F  L  S  L  W  V  S  R  L  W  D  I  R  F  I  L  *  S  *  E  Y  V  K  Q  R  V  L  M  K  N  S  E  G  G  S  G  T  A  S  F  *  L  Q  N  V  *  T  R  S  *  F  Y  V  F  W  L  M  A  *  K  T  G  D  I  F  A  I  T  C  Y  R  I  S  S  Y  L  S  R  I  Y  V  L  I  I  F  P  L  L  K  V  Y  F  L  S  *  V  A  M  F  V  V  H  D  M  C  S  L  I  N  *  S  R  T  W  Q  G  V  P  R  V  D  L  S  G  * </first_frame>
            <second_frame>  I  F  F  F  F  K  I  E  S  F  Q  *  T  F  T  I  W  S  I  K  K  *  N  Y  R  A  K  A  D  I  V  L  K  M  A  G  Y  R  G  D  D  E  Y  D  Y  L  F  K  L  V  L  I  G  D  S  G  V  G  K  S  N  L  L  S  R  F  T  K  N  E  F  N  L  E  S  K  S  T  I  G  V  E  F  A  T  K  S  L  N  I  D  G  K  V  I  K  A  Q  I  W  D  T  A  G  Q  E  R :   Y  R  A  I  T  S  A  Y  Y  R  G  A  V  G  A  L  L  V  Y  D  V  T  R  H  V  T  F  E  N  V  N  R  W  L  K  E  L  R  D  H  T  D  P  N  I  V  V  M  L  L  G  N  K  S  D  L  R  H  L  V  A  V  S  T  E  E  A  K  S  L  A  E  R  E  A  L  Y  F  M  E  T  S  A  L  E  A  T  N  V  E  N  A  F  T  E  A  L  T  Q  I  Y  R  I  V  S  K  K  A  V  E  A  G  D  E  G  A  T  S  T  A  P  P  K  G  Q  T  I  N  I  K  D  E  G  S  A  W  K  K  F  G  C  C  S  S  *  G  S  R  K  T  I  A  Q  A  L  Y  I  S  C  K  L  S  L  N  Q  *  F  P  L  P  V  F  S  H  F  G  Y  R  D  C  G  I  *  D  L  F  Y  S  H  E  N  T  *  S  S  A  F  S  *  K  I  P  K  E  D  Q  V  L  L  V  S  N  Y  R  M  S  K  Q  G  L  S  F  M  F  S  G  *  W  L  E  K  L  E  I  S  L  Q  *  P  V  T  E  Y  L  L  I  C  L  E  F  T  S  *  L  F  F  P  F  *  K  C  I  S  *  A  E  *  Q  C  L  L  F  M  I  C  V  V  *  *  I  K  V  E  H  G  K  V  C  P  E  L  I  *  V  D   </second_frame>
            <third_frame>   F  F  S  S  S  K  L  N  L  F  S  E  L  L  L  F  G  Q  S  R  S  E  I  T  E  Q  K  Q  I  *  F  *  R  W  Q  V  T  E  V  M  M  S  M  I  T  F  S  S  L  C  *  *  V  I  Q  V  W  V  N  L  I  C  F  P  G  S  P  K  M  N  S  I  W  S  L  N  Q  L  L  G  L  N  L  Q  P  K  V  L  I  L  M  V  K  L  L  K  L  R  F  G  I  L  L  V  K  K   : G  I  V  P  L  R  V  L  I  I  G  E  L  S  V  L  C  S  Y  M  M  L  L  D  M  L  P  L  K  T  S  T  G  G  *  R  N  *  E  T  I  L  T  L  T  L  *  S  C  S  *  A  T  N  Q  I  S  D  I  S  W  L  F  Q  L  K  R  L  N  L  W  Q  R  G  K  P  Y  T  S  W  K  L  L  H  *  K  R  P  T  L  K  M  R  L  L  K  L  S  R  R  Y  T  G  S  S  V  R  K  Q  S  R  Q  G  T  K  V  L  L  Q  P  H  H  L  K  D  R  R  L  I  S  K  M  K  D  L  L  G  K  S  L  G  A  V  R  A  R  A  H  V  R  Q  *  L  K  L  Y  I  S  V  V  N  C  H  *  I  N  D  F  L  S  L  F  S  L  T  L  G  I  A  I  V  G  Y  K  I  Y  S  I  V  M  R  I  R  E  A  A  R  S  H  E  K  F  R  R  R  I  R  Y  C  *  F  L  I  T  E  C  L  N  K  V  L  V  L  C  F  L  V  D  G  L  K  N  W  R  Y  L  C  N  N  L  L  P  N  I  F  L  F  V  S  N  L  R  L  N  Y  F  S  P  S  K  S  V  F  P  E  L  S  S  N  V  C  C  S  *  Y  V  *  F  D  K  L  K  *  N  M  A  R  C  A  Q  S  *  F  K  W  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11876" stop="11623"/>
                    <exon start="7448" stop="7013"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYRAKADIVLKMAGYRGDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVNRWLKELRDHTDPNIVVMLLGNKSDLRHLVAVSTEEAKSLAEREALYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSTAPPKGQTINIKDEGSAWKKFGCCSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7526" e_stop="6561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7526" e_stop="6561" e_length="966"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7526" stop="6741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544321" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7350" stop="6846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7350" stop="7006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7318" stop="6669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376733" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7096" stop="6561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306882" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAAGTGTATTTCCTGAGCTGAGTAGCAATGTTTGTTGTTCATGATATGTGTAGTTTGATAAATTAAAGTAGAACATGGCAAGGTGTGCCCAGAGTTGATTTAAGTGGATGA</gDNA_template>
            <first_frame> E  R  E  C  I  G  M  H  P  C  S  F  K  L  L  Y  Y  C  F  S  F  S  S  S  Y  Q  V  S  C  H  Y  E  C  L  L  S  G  S  C  R  C  F  A  R  I  *  C  Y  S  T  C  Y  L  *  K  R  Q  Q  V  V  E  G  I  E  R  P  Y  *  P  *  H  C  S  H  A  P  R  Q  Q  I  R  S  P  T  S  R  G  C  F  N  *  R  G  *  I  F  G  R  E  G  S  P  I  L  H  G  N  F  C  I  R  S  D  Q  R  *  K  C  V  Y  *  S  S  H  A  D  I  P  D  R  Q  *  E  S  S  R  G  R  G  R  R  C  Y  F  N  R  T  T  *  R  T  D  D  *  Y  Q  R  *  R  I  C  L  E  K  V  W  V  L  F  E  L  G  L  T  *  D  N  S  S  S  F  I  Y  Q  L  *  I  V  I  K  S  M  I  S  S  P  C  F  L  S  L  W  V  S  R  L  W  D  I  R  F  I  L  *  S  *  E  Y  V  K  Q  R  V  L  M  K  N  S  E  G  G  S  G  T  A  S  F  *  L  Q  N  V  *  T  R  S  *  F  Y  V  F  W  L  M  A  *  K  T  G  D  I  F  A  I  T  C  Y  R  I  S  S  Y  L  S  R  I  Y  V  L  I  I  F  P  L  L  K  V  Y  F  L  S  *  V  A  M  F  V  V  H  D  M  C  S  L  I  N  *  S  R  T  W  Q  G  V  P  R  V  D  L  S  G  * </first_frame>
            <second_frame>  K  G  N  V  L  G  C  I  L  V  P  L  S  C  C  T  I  A  S  V  F  L  L  H  T  R  Y  R  A  I  T  S  A  Y  Y  R  G  A  V  G  A  L  L  V  Y  D  V  T  R  H  V  T  F  E  N  V  N  R  W  L  K  E  L  R  D  H  T  D  P  N  I  V  V  M  L  L  G  N  K  S  D  L  R  H  L  V  A  V  S  T  E  E  A  K  S  L  A  E  R  E  A  L  Y  F  M  E  T  S  A  L  E  A  T  N  V  E  N  A  F  T  E  A  L  T  Q  I  Y  R  I  V  S  K  K  A  V  E  A  G  D  E  G  A  T  S  T  A  P  P  K  G  Q  T  I  N  I  K  D  E  G  S  A  W  K  K  F  G  C  C  S  S  *  G  S  R  K  T  I  A  Q  A  L  Y  I  S  C  K  L  S  L  N  Q  *  F  P  L  P  V  F  S  H  F  G  Y  R  D  C  G  I  *  D  L  F  Y  S  H  E  N  T  *  S  S  A  F  S  *  K  I  P  K  E  D  Q  V  L  L  V  S  N  Y  R  M  S  K  Q  G  L  S  F  M  F  S  G  *  W  L  E  K  L  E  I  S  L  Q  *  P  V  T  E  Y  L  L  I  C  L  E  F  T  S  *  L  F  F  P  F  *  K  C  I  S  *  A  E  *  Q  C  L  L  F  M  I  C  V  V  *  *  I  K  V  E  H  G  K  V  C  P  E  L  I  *  V  D   </second_frame>
            <third_frame>   K  G  M  Y  W  D  A  S  L  F  L  *  V  V  V  L  L  L  Q  F  F  F  F  I  P  G  I  V  P  L  R  V  L  I  I  G  E  L  S  V  L  C  S  Y  M  M  L  L  D  M  L  P  L  K  T  S  T  G  G  *  R  N  *  E  T  I  L  T  L  T  L  *  S  C  S  *  A  T  N  Q  I  S  D  I  S  W  L  F  Q  L  K  R  L  N  L  W  Q  R  G  K  P  Y  T  S  W  K  L  L  H  *  K  R  P  T  L  K  M  R  L  L  K  L  S  R  R  Y  T  G  S  S  V  R  K  Q  S  R  Q  G  T  K  V  L  L  Q  P  H  H  L  K  D  R  R  L  I  S  K  M  K  D  L  L  G  K  S  L  G  A  V  R  A  R  A  H  V  R  Q  *  L  K  L  Y  I  S  V  V  N  C  H  *  I  N  D  F  L  S  L  F  S  L  T  L  G  I  A  I  V  G  Y  K  I  Y  S  I  V  M  R  I  R  E  A  A  R  S  H  E  K  F  R  R  R  I  R  Y  C  *  F  L  I  T  E  C  L  N  K  V  L  V  L  C  F  L  V  D  G  L  K  N  W  R  Y  L  C  N  N  L  L  P  N  I  F  L  F  V  S  N  L  R  L  N  Y  F  S  P  S  K  S  V  F  P  E  L  S  S  N  V  C  C  S  *  Y  V  *  F  D  K  L  K  *  N  M  A  R  C  A  Q  S  *  F  K  W  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7525" stop="7013"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGNVLGCILVPLSCCTIASVFLLHTRYRAITSAYYRGAVGALLVYDVTRHVTFENVNRWLKELRDHTDPNIVVMLLGNKSDLRHLVAVSTEEAKSLAEREALYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSTAPPKGQTINIKDEGSAWKKFGCCSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9604" e_stop="8816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="9604" e_stop="8816" e_length="789"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9604" stop="8816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9603" stop="9161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCT</gDNA_template>
            <first_frame> V  M  I  I  R  H  I  K  H  V  N  K  K  E  *  R  S  I  C  E  N  S  N  Y  K  L  S  S  K  L  N  C  H  F  E  I  *  M  F  Y  M  D  S  S  L  I  I  I  I  N  I  R  V  *  V  I  V  M  W  A  W  L  L  H  V  D  T  L  K  I  S  E  K  S  I  S  T  H  T  R  Y  V  C  T  S  *  E  *  *  I  F  G  L  V  R  H  K  L  N  Q  D  A  P  K  A  *  L  E  W  Q  K  V  E  D  L  *  L  R  S  Q  V  Q  A  H  T  M  Q  S  E  A  W  Y  L  S  G  E  G  *  R  G  G  P  I  I  H  R  V  *  K  V  V  I  G  P  K  G  S  G  S  R  I  N  K  *  L  E  V  I  F  V  C  D  T  T  *  S  T  D  K  K  N  *  D  T  T  *  G  N  I  R  T  S  V  G  F  F  S  K  G  G  F  Q  A  I  L  S  H  L  L  R  S  K  S  T  S  I  V  I  R  *  L  S  I  K  A  *  T  N  G  K  M  S  P  Y  I  F  C  L  C  *  D  L  I  P  E  I  P  W  F  *  S  I  S  L  T  L  P  W  L  F  I  T  S </first_frame>
            <second_frame>  *  *  L  *  D  I  *  N  M  L  I  K  R  S  R  E  V  Y  A  K  I  Q  T  T  N  L  V  P  N  *  T  V  I  L  K  Y  R  C  F  T  W  I  L  H  *  S  L  S  S  I  Y  V  F  E  *  L  *  C  G  H  G  Y  F  M  *  I  H  S  K  L  A  K  S  L  *  V  H  I  L  D  T  Y  A  H  H  R  N  N  K  S  L  D  *  L  G  I  N  *  T  K  M  P  P  R  P  S  S  S  G  K  R  W  R  I  C  D  L  G  R  R  F  K  P  T  P  C  K  A  K  P  G  I  *  V  G  K  G  R  G  V  D  P  L  S  T  E  F  R  R  L  *  L  V  Q  R  A  V  G  H  G  *  I  N  N  W  K  S  Y  L  Y  V  I  Q  L  K  V  L  T  K  R  I  E  I  Q  L  K  V  T  F  E  L  L  *  D  F  L  V  K  V  V  F  R  P  F  *  A  T  C  Y  V  L  N  P  P  V  *  L  S  G  N  C  L  S  K  L  R  Q  M  G  R  C  H  P  T  F  F  A  Y  A  R  T  *  S  Q  K  S  H  G  F  N  L  F  H  *  H  Y  P  G  F  L  *  L   </second_frame>
            <third_frame>   D  D  Y  K  T  Y  K  T  C  *  *  K  G  V  E  K  Y  M  R  K  F  K  L  Q  T  *  F  Q  T  K  L  S  F  *  N  I  D  V  L  H  G  F  F  I  N  H  Y  H  Q  Y  T  C  L  S  D  C  D  V  G  M  V  T  S  C  R  Y  T  Q  N  *  R  K  V  Y  K  Y  T  Y  *  I  R  M  H  I  I  G  I  I  N  L  W  I  S  *  A  *  T  K  P  R  C  P  Q  G  L  A  R  V  A  K  G  G  G  F  V  T  *  V  A  G  S  S  P  H  H  A  K  R  S  L  V  F  K  W  G  R  V  E  G  W  T  H  Y  P  P  S  L  E  G  C  D  W  S  K  G  Q  W  V  T  D  K  *  I  I  G  S  H  I  C  M  *  Y  N  L  K  Y  *  Q  K  E  L  R  Y  N  L  R  *  H  S  N  F  C  R  I  F  *  *  R  W  F  S  G  H  F  E  P  P  V  T  F  *  I  H  Q  Y  S  Y  P  V  T  V  Y  Q  S  L  D  K  W  E  D  V  T  L  H  F  L  P  M  L  G  L  D  P  R  N  P  M  V  L  I  Y  F  I  D  T  T  L  A  F  Y  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0020F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="11270" e_stop="11255"/>
            <exon e_start="10907" e_stop="10302"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.879" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.625">
            <gDNA_exon_boundary e_start="11270" e_stop="11255" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.879" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11254" i_stop="10908" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="10907" e_stop="10302" e_length="606"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11270" stop="11255"/>
              <exon start="10907" stop="10302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317989" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGACCATTGGCTCAA : TATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTG</gDNA_template>
            <first_frame> R  T  I  G  S   : I  L  S  G  C  F  L  C  V  W  D  L  D  E  *  E  V  L  V  G  L  L  V  *  S  Y  F  W  *  G  S  S  N  D  V  V  F  I  G  I  F  *  E  C  L  D  V  L  L  L  L  D  W  D  F  L  S  L  G  V  V  S  V  F  L  I  E  I  R  G  T  W  S  A  Y  C  N  Q  L  Y  I  K  K  K  E  E  Y  F  S  V  F  G  S  *  K  R  I  S  *  E  H  F  E  D  V  M  K  *  I  K  V  C  C  P  N  G  L  L  D  E  M  I  I  Q  F  N  I  C  A  G  Y  V  C  S  *  L  F  R  C  Y  C  D  V  N  L  K  A  N  Y  R  N  C  S  I  Q  I  C  C  F  K  I  I  *  T  Y  S  V  P  A  R  V  H  W  Q  V  C  F  F  *  Y  E  K  *  L  T  K  V  T  Q  Y  F  L  I  I  F  E  I  L  S  Y  F  I  </first_frame>
            <second_frame>  G  P  L  A  Q  :  Y  *  V  V  V  F  C  V  F  G  I  *  M  S  E  K  C  L  W  V  C  W  F  N  L  I  F  G  K  V  L  Q  M  M  L  C  L  L  V  F  S  K  S  V  *  M  C  C  C  C  L  I  G  I  S  C  L  W  V  W  Y  L  C  S  *  L  K  F  E  G  H  G  V  L  T  A  T  N  Y  I  *  K  K  K  K  N  I  F  P  C  L  V  H  E  K  E  Y  R  E  S  I  L  K  T  *  *  S  K  S  K  C  V  A  P  M  D  F  *  M  R  *  S  Y  N  S  T  F  V  Q  A  M  C  A  P  S  C  L  D  A  I  V  M  S  I  *  K  L  I  I  E  I  V  V  S  K  F  V  V  L  K  L  F  E  L  I  Q  F  P  H  E  Y  I  G  R  Y  V  F  S  N  M  K  N  N  *  P  K  *  L  N  I  S  S  *  F  L  K  S  L  A  I  L  L </second_frame>
            <third_frame>   D  H  W  L  N :   I  K  W  L  F  F  V  C  L  G  F  R  *  V  R  S  A  C  G  F  V  G  L  I  L  F  L  V  R  F  F  K  *  C  C  V  Y  W  Y  F  L  R  V  S  R  C  A  V  V  A  *  L  G  F  L  V  F  G  C  G  I  C  V  P  N  *  N  S  R  D  M  E  C  L  L  Q  P  I  I  Y  K  K  K  R  R  I  F  F  R  V  W  F  M  K  K  N  I  V  R  A  F  *  R  R  N  E  V  N  Q  S  V  L  P  Q  W  T  F  R  *  D  D  H  T  I  Q  H  L  C  R  L  C  V  L  L  V  V  *  M  L  L  *  C  Q  S  E  S  *  L  *  K  L  *  Y  P  N  L  L  F  *  N  Y  L  N  L  F  S  S  R  T  S  T  L  A  G  M  F  F  L  I  *  K  I  I  D  Q  S  N  S  I  F  P  H  N  F  *  N  P  *  L  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0020F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="20919" PGL_stop="23650"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20919" e_stop="20955"/>
            <exon e_start="23139" e_stop="23650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20919" e_stop="20955" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20956" i_stop="23138" i_length="2183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23139" e_stop="23650" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20919" stop="20955"/>
              <exon start="23139" stop="23649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23163" stop="23650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAGCGGTCAGCACATTGTGGAAGTAAAGCCTCAG : GGGGTCACCAAAGGTTTAGTTGCAGAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTGA</gDNA_template>
            <first_frame> E  K  R  S  A  H  C  G  S  K  A  S   : G  G  H  Q  R  F  S  C  R  K  S  L  Y  I  F  S  G  E  R  K  T  G  G  F  C  A  L  H  W  *  *  *  I  R  *  R  Y  V  *  N  H  W  R  C  F  V  Q  K  Y  Y  F  I  *  C  Q  G  I  C  L  H  S  W  T  K  T  *  Q  S  K  V  L  L  G  *  H  I  *  G  G  A  Y  A  R  L  P  C  *  C  H  *  Y  S  S  D  F  *  *  R  *  T  C  G  L  R  L  N  V  A  T  R  C  F  V  C  F  G  Y  L  L  Y  *  M  Y  I  P  G  L  K  M  A  H  C  P  F  E  F  G  F  E  V  *  D  G  G  I  S  N  S  V  Q  S  F  F  P  F  *  L  F  Y  S  F  I  I  S  L  Y  V  I  Y  L  * </first_frame>
            <second_frame>  K  S  G  Q  H  I  V  E  V  K  P  Q  :  G  V  T  K  G  L  V  A  E  K  V  F  T  S  L  A  E  K  G  K  L  A  D  F  V  L  C  I  G  D  D  R  S  D  E  D  M  F  E  I  I  G  D  A  L  S  R  N  I  I  S  Y  D  A  K  V  F  A  C  T  V  G  Q  K  P  S  K  A  K  Y  Y  L  D  D  T  S  E  V  V  L  M  L  D  S  L  A  D  A  T  D  T  P  V  T  S  D  D  D  E  P  A  D  S  D  *  M  *  L  P  D  V  L  F  A  S  V  T  F  S  I  E  C  I  F  Q  V  *  R  W  H  I  V  H  L  S  S  V  S  R  F  K  T  V  E  S  Q  I  L  F  N  H  S  F  L  S  D  C  S  I  L  L  S  L  A  C  M  *  Y  I  S   </second_frame>
            <third_frame>   K  A  V  S  T  L  W  K  *  S  L  R :   G  S  P  K  V  *  L  Q  K  K  S  L  H  L  *  R  R  K  E  N  W  R  I  L  C  F  A  L  V  M  I  D  Q  M  K  I  C  L  K  S  L  A  M  L  C  P  E  I  L  F  H  M  M  P  R  Y  L  L  A  Q  L  D  K  N  L  A  K  Q  S  I  T  W  M  T  H  L  R  W  C  L  C  *  T  P  L  L  M  P  L  I  L  Q  *  L  L  M  T  M  N  L  R  T  P  T  E  C  S  Y  Q  M  F  C  L  L  R  L  P  S  L  L  N  V  Y  S  R  S  E  D  G  T  L  S  I  *  V  R  F  R  G  L  R  R  W  N  L  K  F  C  S  I  I  L  S  F  L  I  V  L  F  F  Y  H  *  P  V  C  N  I  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20920" stop="20955"/>
                    <exon start="23139" stop="23453"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSGQHIVEVKPQGVTKGLVAEKVFTSLAEKGKLADFVLCIGDDRSDEDMFEIIGDALSRNIISYDAKVFACTVGQKPSKAKYYLDDTSEVVLMLDSLADATDTPVTSDDDEPADSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26928" PGL_stop="27458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26928" e_stop="27458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="26928" e_stop="27458" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26928" stop="27458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26928" stop="27458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26929" stop="27458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGTAGCATTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGCATGAA</gDNA_template>
            <first_frame> L  V  A  L  Q  *  R  K  D  *  F  Y  I  K  C  E  N  L  L  H  T  Q  M  H  K  S  V  F  *  L  S  Y  S  L  Y  I  V  Y  T  L  D  Q  I  R  G  I  S  V  C  E  L  Y  K  L  Q  Y  M  F  K  L  L  Y  S  C  W  G  R  N  S  S  R  D  A  V  F  S  R  N  F  N  K  F  *  E  N  S  T  E  F  I  S  S  H  R  L  L  F  K  E  D  F  H  N  L  I  N  C  F  T  V  A  A  D  L  A  Q  C  N  L  I  C  T  V  *  K  L  L  H  S  N  I  N  V  F  S  *  L  F  *  H  R  V  P  G  H  H  S  H  D  Y  I  T  T  L  G  *  R  I  H  E  G  P  R  A  K  F  R  H  T  K  S  D  N  H  L  H  E </first_frame>
            <second_frame>  S  *  H  Y  S  E  E  K  T  S  S  I  S  N  V  K  I  C  F  I  H  K  C  T  K  V  F  F  N  F  L  I  V  Y  I  L  F  I  L  *  I  K  L  G  G  *  V  Y  V  N  C  T  S  C  S  I  C  S  S  Y  Y  T  A  A  G  V  G  T  A  A  G  T  R  F  S  A  G  I  S  T  N  S  E  R  I  A  R  N  S  S  P  V  I  V  S  F  S  R  R  T  S  T  I  L  S  I  A  S  R  L  L  R  I  W  L  N  A  I  S  Y  A  L  S  E  S  F  F  T  A  T  S  M  S  S  A  S  F  S  D  I  E  F  L  A  I  I  L  M  I  T  S  P  L  W  A  E  E  S  M  R  D  H  G  P  S  S  D  I  P  K  V  T  T  I  C  M   </second_frame>
            <third_frame>   R  S  I  T  V  K  K  R  L  V  L  Y  Q  M  *  K  F  A  S  Y  T  N  A  Q  K  C  F  L  T  F  L  *  S  I  Y  C  L  Y  S  R  S  N  *  G  D  K  C  M  *  I  V  Q  V  A  V  Y  V  Q  A  I  I  Q  L  L  G  *  E  Q  Q  Q  G  R  G  F  Q  Q  E  F  Q  Q  I  L  R  E  *  H  G  I  H  L  Q  S  S  S  P  F  Q  G  G  L  P  Q  S  Y  Q  L  L  H  G  C  C  G  F  G  S  M  Q  S  H  M  H  C  L  K  A  S  S  Q  Q  H  Q  C  L  Q  L  A  F  L  T  S  S  S  W  P  S  F  S  *  L  H  H  H  F  G  L  K  N  P  *  G  T  T  G  Q  V  Q  T  Y  Q  K  *  Q  P  S  A  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27067" stop="27456"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYVNCTSCSICSSYYTAAGVGTAAGTRFSAGISTNSERIARNSSPVIVSFSRRTSTILSIASRLLRIWLNAISYALSESFFTATSMSSASFSDIEFLAIILMITSPLWAEESMRDHGPSSDIPKVTTICM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="30968" PGL_stop="26928"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30968" e_stop="30951"/>
            <exon e_start="29863" e_stop="28650"/>
            <exon e_start="28575" e_stop="28262"/>
            <exon e_start="28083" e_stop="27843"/>
            <exon e_start="27449" e_stop="26928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.540" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.949" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30968" e_stop="30951" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.540">
            <gDNA_intron_boundary i_start="30950" i_stop="29864" i_length="1087"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="29863" e_stop="28650" e_length="1214"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28649" i_stop="28576" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28575" e_stop="28262" e_length="314"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.974">
            <gDNA_intron_boundary i_start="28261" i_stop="28084" i_length="178"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28083" e_stop="27843" e_length="241"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27842" i_stop="27450" i_length="393"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="27449" e_stop="26928" e_length="522"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30968" stop="30951"/>
              <exon start="29863" stop="29277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29863" stop="29132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29644" stop="29058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29639" stop="29120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29635" stop="29134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29630" stop="29167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29622" stop="29075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29315" stop="28787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29301" stop="28650"/>
              <exon start="28575" stop="28354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29297" stop="28650"/>
              <exon start="28575" stop="28517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29175" stop="28650"/>
              <exon start="28575" stop="28563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28812" stop="28650"/>
              <exon start="28575" stop="28262"/>
              <exon start="28083" stop="28053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28780" stop="28650"/>
              <exon start="28575" stop="28262"/>
              <exon start="28083" stop="27992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28491" stop="28262"/>
              <exon start="28083" stop="27843"/>
              <exon start="27449" stop="27312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28310" stop="28262"/>
              <exon start="28083" stop="27843"/>
              <exon start="27449" stop="26996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27449" stop="26928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27449" stop="26928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27449" stop="26928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27449" stop="26938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27402" stop="26954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27326" stop="26938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218307" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27304" stop="26938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27207" stop="26941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTGTCAACTTTATCAG : GTTCTTGCTTCTTTTCTGAGCGTATCAACATGGCGACTTCATCAGTATGCATAGCAGGAAATGATTTGTCCACCCATAGAACACAGAAAGTTTTTAGGAAGGAGATCTATGGCAGAAAAATTTTGTACTCCTCAAATCTTCCATCATCTAGGAAAACATCAAGAGTAGTTGTAAAAGCATCCCTTCAGCAAGGGCCACATGAAGGAAGAAGAGGCTTTCTTAAATTATTGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAGGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAA : GTATCCGTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTCAATTGATAGGATAGTGGCTGGTATGGAAGGAACAGTCATGACTGATGGCAAGAGCAAGAGTCTGGTGGCATATCACGAAGTTGGACATGCCATCTGTGG : AACTCTCACTCCAGGGCATGATGCTGTACAAAAGGTCACTCTAATCCCACGTGGTCAGGCAAAAGGTTTGACCTGGTTCATTCCTGCAGATGACCCAACCTTAATATCCAAGCAACAACTCTTTGCTAGAATTGTTGGTGGACTTGGTGGAAGAGCTGCAGAAGAAGTGATCTTTGGTGAACCTGAAGTGACCACTGGTGCTGCTGGTGATTTGCAGCAGATCACTGGTTTGGCAAAACAG : ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAG</gDNA_template>
            <first_frame> L  C  Q  L  Y  Q  :  V  L  A  S  F  L  S  V  S  T  W  R  L  H  Q  Y  A  *  Q  E  M  I  C  P  P  I  E  H  R  K  F  L  G  R  R  S  M  A  E  K  F  C  T  P  Q  I  F  H  H  L  G  K  H  Q  E  *  L  *  K  H  P  F  S  K  G  H  M  K  E  E  E  A  F  L  N  Y  C  L  E  M  L  G  L  E  C  L  L  C  *  V  M  G  K  P  M  L  M  S  K  V  F  L  T  Q  G  C  L  I  L  D  F  W  S  I  W  T  R  T  G  C  K  K  *  I  C  L  K  M  E  P  *  L  L  *  K  L  Y  L  Q  N  W  G  T  E  C  K  E  L  G  Y  N  Y  L  D  S  A  R  N  S  F  K  S  S  G  K  R  T  L  I  S  L  L  T  M  L  K  R  T  Q  V  L  S  Y  S  T  *  L  E  I  W  L  S  H  L  F  *  L  V  V  F  S  C  Y  Q  G  G  L  T  E  E  W  E  V  L  V  G  L  E  T  H  *  H  L  V  N  Q  R  L  S  S  K  W  S  Q  T  L  V  *  H  L  M  M  L  L  V  *  M  K  Q  N  K  I  L  W  R  S  *  N  F  *  R  N  L  R  D  L  L  Q  *  G  L  V  F  Q  K  V  F  F  L  L  V  L  L  V  L  G  K  P  C  *  Q  R  Q  L  L  V  K  R  V  F  H  F  S  Q  F  Q  V  Q  N  S  L  R  C  L  L  V  L  E  P  L  E  S  V  I  F  S  R  R  P  R  K  M  L  L  A  L  Y  L  L  M  K  L  M  L  L  G  G  K  E  G  L  E  L  E  E  E  M  M  K  G  N  R  P  *  T  N  Y  *  L  K  W  M  V  S  K  E  I  L  V  *  *  L  L  R  Q  P  I  V  Q  I  F  L  T  L  L  C  *  G  Q  D  D  L  I  D  K :   Y  P  W  M  S  Q  T  S  R  E  E  Q  R  S  *  R  F  M  P  A  T  R  S  L  I  Q  M  C  L  L  K  L  L  P  *  G  H  R  V  S  V  E  Q  I  L  L  T  S  *  M  K  Q  P  F  L  Q  V  D  V  V  R  Q  Q  S  H  P  K  R  L  M  I  Q  L  I  G  *  W  L  V  W  K  E  Q  S  *  L  M  A  R  A  R  V  W  W  H  I  T  K  L  D  M  P  S  V   : E  L  S  L  Q  G  M  M  L  Y  K  R  S  L  *  S  H  V  V  R  Q  K  V  *  P  G  S  F  L  Q  M  T  Q  P  *  Y  P  S  N  N  S  L  L  E  L  L  V  D  L  V  E  E  L  Q  K  K  *  S  L  V  N  L  K  *  P  L  V  L  L  V  I  C  S  R  S  L  V  W  Q  N  R :   W  L  S  L  L  V  C  L  N  L  A  R  G  P  S  W  I  L  Q  P  K  V  V  M  *  S  *  E  *  W  P  G  T  R  C  Q  K  S  *  L  K  T  L  M  L  L  *  R  S  F  Q  T  V  H  M  R  L  H  *  A  K  S  A  A  T  V  K  Q  L  I  R  L  W  K  S  S  L  K  R  R  R  *  L  E  M  N  S  V  L  F  S  Q  N  L  L  K  F  L  L  K  T  A  S  L  L  L  F  L  P  Q  Q  L  Y  N  S  L  N  I  Y  C  N  L  Y  N  S  H  T  L  I  P  L  I  *  S  R  V  *  T  I  Y  R  L  *  E  S  *  K  T  L  L  C  I  C  V  *  S  K  F  S  H  L  I  *  N  *  S  F  L  H  C  N  A  T   </first_frame>
            <second_frame>  S  V  N  F  I  R :   F  L  L  L  F  *  A  Y  Q  H  G  D  F  I  S  M  H  S  R  K  *  F  V  H  P  *  N  T  E  S  F  *  E  G  D  L  W  Q  K  N  F  V  L  L  K  S  S  I  I  *  E  N  I  K  S  S  C  K  S  I  P  S  A  R  A  T  *  R  K  K  R  L  S  *  I  I  A  W  K  C  W  A  W  S  A  C  F  V  R  *  W  E  S  L  C  *  *  A  R  C  F  *  L  K  D  V  L  F  *  I  F  G  V  S  G  Q  G  Q  G  A  K  S  R  S  V  *  K  W  N  H  S  Y  C  R  S  C  I  S  R  I  G  E  P  S  A  K  S  *  G  T  T  T  W  T  Q  P  G  T  P  S  K  V  P  G  K  E  H  *  F  R  C  S  Q  C  S  R  G  L  R  F  S  H  I  Q  L  D  W  K  S  G  F  P  T  Y  F  D  W  W  S  F  P  A  I  K  A  V  *  R  R  N  G  R  S  W  W  A  W  K  P  T  S  I  W  S  I  K  G  *  V  P  N  G  A  K  H  W  C  D  I  *  *  C  C  W  C  R  *  S  K  T  R  F  Y  G  G  R  R  I  F  E  E  T  *  E  I  Y  C  S  R  G  S  Y  S  K  R  C  S  S  C  W  S  S  W  Y  W  E  N  L  A  S  K  G  N  C  W  *  S  G  C  S  I  F  L  N  F  R  F  R  I  R  *  D  V  C  W  C  W  S  L  S  S  P  *  S  F  Q  E  G  Q  G  K  C  S  L  H  C  I  C  *  *  N  *  C  C  W  A  A  K  R  D  W  N  W  R  R  K  *  *  K  G  T  D  P  E  P  T  I  D  *  N  G  W  F  R  R  K  Y  W  Y  N  S  C  C  G  N  Q  S  C  R  Y  S  *  L  C  F  A  E  A  R  T  I  *  *  T   : S  I  R  G  C  P  R  H  Q  G  K  N  R  D  L  K  G  S  C  R  Q  Q  E  V  *  F  R  C  V  S  *  S  Y  C  H  E  D  T  G  F  Q  W  S  R  S  C  *  P  L  K  *  S  S  H  S  C  R  S  T  W  *  D  S  N  R  I  Q  R  D  *  *  F  N  *  *  D  S  G  W  Y  G  R  N  S  H  D  *  W  Q  E  Q  E  S  G  G  I  S  R  S  W  T  C  H  L  W  :  N  S  H  S  R  A  *  C  C  T  K  G  H  S  N  P  T  W  S  G  K  R  F  D  L  V  H  S  C  R  *  P  N  L  N  I  Q  A  T  T  L  C  *  N  C  W  W  T  W  W  K  S  C  R  R  S  D  L  W  *  T  *  S  D  H  W  C  C  W  *  F  A  A  D  H  W  F  G  K  T   : D  G  C  H  F  W  Y  V  *  T  W  P  V  V  P  H  G  F  F  S  P  K  W  *  C  N  H  E  N  D  G  Q  E  L  D  V  R  K  A  S  *  R  H  *  C  C  C  E  E  A  F  R  Q  C  I  *  D  C  I  E  P  N  P  Q  Q  P  *  S  N  *  *  D  C  G  S  P  P  *  K  G  D  D  D  W  R  *  I  P  C  Y  S  L  R  I  C  *  N  S  C  *  K  P  R  P  C  C  C  S  Y  P  S  S  C  I  I  A  *  T  Y  T  A  T  C  T  I  H  I  H  L  S  P  *  F  D  L  E  Y  K  Q  Y  I  D  Y  K  K  V  K  K  H  F  C  A  F  V  Y  E  A  N  F  H  I  *  Y  R  T  S  L  F  F  T  V  M  L  R  </second_frame>
            <third_frame>   L  S  T  L  S   : G  S  C  F  F  S  E  R  I  N  M  A  T  S  S  V  C  I  A  G  N  D  L  S  T  H  R  T  Q  K  V  F  R  K  E  I  Y  G  R  K  I  L  Y  S  S  N  L  P  S  S  R  K  T  S  R  V  V  V  K  A  S  L  Q  Q  G  P  H  E  G  R  R  G  F  L  K  L  L  L  G  N  V  G  L  G  V  P  A  L  L  G  N  G  K  A  Y  A  D  E  Q  G  V  S  N  S  R  M  S  Y  S  R  F  L  E  Y  L  D  K  D  R  V  Q  K  V  D  L  F  E  N  G  T  I  A  I  V  E  A  V  S  P  E  L  G  N  R  V  Q  R  V  R  V  Q  L  P  G  L  S  Q  E  L  L  Q  K  F  R  E  K  N  I  D  F  A  A  H  N  A  Q  E  D  S  G  S  L  I  F  N  L  I  G  N  L  A  F  P  L  I  L  I  G  G  L  F  L  L  S  R  R  S  N  G  G  M  G  G  P  G  G  P  G  N  P  L  A  F  G  Q  S  K  A  K  F  Q  M  E  P  N  T  G  V  T  F  D  D  V  A  G  V  D  E  A  K  Q  D  F  M  E  V  V  E  F  L  K  K  P  E  R  F  T  A  V  G  A  R  I  P  K  G  V  L  L  V  G  P  P  G  T  G  K  T  L  L  A  K  A  I  A  G  E  A  G  V  P  F  F  S  I  S  G  S  E  F  V  E  M  F  V  G  V  G  A  S  R  V  R  D  L  F  K  K  A  K  E  N  A  P  C  I  V  F  V  D  E  I  D  A  V  G  R  Q  R  G  T  G  I  G  G  G  N  D  E  R  E  Q  T  L  N  Q  L  L  T  E  M  D  G  F  E  G  N  T  G  I  I  V  V  A  A  T  N  R  A  D  I  L  D  S  A  L  L  R  P  G  R  F  D  R  Q  :  V  S  V  D  V  P  D  I  K  G  R  T  E  I  L  K  V  H  A  G  N  K  K  F  D  S  D  V  S  L  E  V  I  A  M  R  T  P  G  F  S  G  A  D  L  A  N  L  L  N  E  A  A  I  L  A  G  R  R  G  K  T  A  I  A  S  K  E  I  D  D  S  I  D  R  I  V  A  G  M  E  G  T  V  M  T  D  G  K  S  K  S  L  V  A  Y  H  E  V  G  H  A  I  C  G :   T  L  T  P  G  H  D  A  V  Q  K  V  T  L  I  P  R  G  Q  A  K  G  L  T  W  F  I  P  A  D  D  P  T  L  I  S  K  Q  Q  L  F  A  R  I  V  G  G  L  G  G  R  A  A  E  E  V  I  F  G  E  P  E  V  T  T  G  A  A  G  D  L  Q  Q  I  T  G  L  A  K  Q  :  M  V  V  T  F  G  M  S  E  L  G  P  W  S  L  M  D  S  S  A  Q  S  G  D  V  I  M  R  M  M  A  R  N  S  M  S  E  K  L  A  E  D  I  D  V  A  V  K  K  L  S  D  S  A  Y  E  I  A  L  S  Q  I  R  S  N  R  E  A  I  D  K  I  V  E  V  L  L  E  K  E  T  M  T  G  D  E  F  R  A  I  L  S  E  F  V  E  I  P  A  E  N  R  V  P  A  A  V  P  T  P  A  A  V  *  *  L  E  H  I  L  Q  L  V  Q  F  T  Y  T  Y  P  P  N  L  I  *  S  I  N  N  I  *  T  I  R  K  L  K  N  T  F  V  H  L  C  M  K  Q  I  F  T  F  D  I  E  L  V  F  S  S  L  *  C  Y  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30966" stop="30951"/>
                    <exon start="29863" stop="28650"/>
                    <exon start="28575" stop="28262"/>
                    <exon start="28083" stop="27843"/>
                    <exon start="27449" stop="27108"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2124</number_coding_nucleotides>
                  <number_encoded_amino_acids>708</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSTLSGSCFFSERINMATSSVCIAGNDLSTHRTQKVFRKEIYGRKILYSSNLPSSRKTSRVVVKASLQQGPHEGRRGFLKLLLGNVGLGVPALLGNGKAYADEQGVSNSRMSYSRFLEYLDKDRVQKVDLFENGTIAIVEAVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLIFNLIGNLAFPLILIGGLFLLSRRSNGGMGGPGGPGNPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPGRFDRQVSVDVPDIKGRTEILKVHAGNKKFDSDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAIASKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQAKGLTWFIPADDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSELGPWSLMDSSAQSGDVIMRMMARNSMSEKLAEDIDVAVKKLSDSAYEIALSQIRSNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVPAAVPTPAAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="33593" PGL_stop="32674"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33593" e_stop="33432"/>
            <exon e_start="33340" e_stop="33264"/>
            <exon e_start="33187" e_stop="32674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.883" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33593" e_stop="33432" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33431" i_stop="33341" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33340" e_stop="33264" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.883">
            <gDNA_intron_boundary i_start="33263" i_stop="33188" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="33187" e_stop="32674" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33593" stop="33432"/>
              <exon start="33340" stop="33264"/>
              <exon start="33187" stop="32674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACAGAAAAATTTACAAACATGAACAGCAACAGGCCTCATAATTTTACACAACATGGAAATTGGAGCAATGGAGAGTGGCATGATCCTAATTCACATGGACCTGAGTACATATGGCAACCTATTATCCCTCGTCCTCCGCCTCCACGAGATATCCCTCAG : AATCCTAGACGTGTCGTTCATGATCCACCGTTGCAAGTAACAGAGAGACCATTTCTAGTACCTACTGGTGCAACAAG : TTATCCATATCCAGGCCAACCACGACGTAGGCTAACTCATCCTCCTGTTCGCGTTCTACTCCATAACGATGATGTACCAAGACATGGATCATATCAGAGACCAAGCCAACTTCCATTCGATTCTCCTCCTCCTCCGTGGTTTATGCAGAGCAATGAAACGTCGAGGAATGAATCAAAATTGAGCCCAAATGAGCAAAAGGCAGCCTTAAATAAACTCAAGAAAGAAATCTACAATCCTGTACAAGCAAAAGTGGCAAAACAAGTGAACCTTTACTTTAGAGGCTTGAACAATACTACCACCAACGAATCGATCAAGGACAAAGATGAGGATGGTAAAAGATGTTCGATTTGCTTGGAAGATTTCGAGCCTAAAGAGATTGTGACAGTCACACCATGTAGTCATATGTTCCACGAAGACTGCATCGTTCCATGGGTGACAAATCATGGCTCGTGCCCTGTCTGTCGATTTGCTATCTGTGAAAGAATGAAACAGGACACAACAGACTCATCGACG</gDNA_template>
            <first_frame> N  T  E  K  F  T  N  M  N  S  N  R  P  H  N  F  T  Q  H  G  N  W  S  N  G  E  W  H  D  P  N  S  H  G  P  E  Y  I  W  Q  P  I  I  P  R  P  P  P  P  R  D  I  P  Q  :  N  P  R  R  V  V  H  D  P  P  L  Q  V  T  E  R  P  F  L  V  P  T  G  A  T  S :   Y  P  Y  P  G  Q  P  R  R  R  L  T  H  P  P  V  R  V  L  L  H  N  D  D  V  P  R  H  G  S  Y  Q  R  P  S  Q  L  P  F  D  S  P  P  P  P  W  F  M  Q  S  N  E  T  S  R  N  E  S  K  L  S  P  N  E  Q  K  A  A  L  N  K  L  K  K  E  I  Y  N  P  V  Q  A  K  V  A  K  Q  V  N  L  Y  F  R  G  L  N  N  T  T  T  N  E  S  I  K  D  K  D  E  D  G  K  R  C  S  I  C  L  E  D  F  E  P  K  E  I  V  T  V  T  P  C  S  H  M  F  H  E  D  C  I  V  P  W  V  T  N  H  G  S  C  P  V  C  R  F  A  I  C  E  R  M  K  Q  D  T  T  D  S  S  T </first_frame>
            <second_frame>  T  Q  K  N  L  Q  T  *  T  A  T  G  L  I  I  L  H  N  M  E  I  G  A  M  E  S  G  M  I  L  I  H  M  D  L  S  T  Y  G  N  L  L  S  L  V  L  R  L  H  E  I  S  L  R :   I  L  D  V  S  F  M  I  H  R  C  K  *  Q  R  D  H  F  *  Y  L  L  V  Q  Q   : V  I  H  I  Q  A  N  H  D  V  G  *  L  I  L  L  F  A  F  Y  S  I  T  M  M  Y  Q  D  M  D  H  I  R  D  Q  A  N  F  H  S  I  L  L  L  L  R  G  L  C  R  A  M  K  R  R  G  M  N  Q  N  *  A  Q  M  S  K  R  Q  P  *  I  N  S  R  K  K  S  T  I  L  Y  K  Q  K  W  Q  N  K  *  T  F  T  L  E  A  *  T  I  L  P  P  T  N  R  S  R  T  K  M  R  M  V  K  D  V  R  F  A  W  K  I  S  S  L  K  R  L  *  Q  S  H  H  V  V  I  C  S  T  K  T  A  S  F  H  G  *  Q  I  M  A  R  A  L  S  V  D  L  L  S  V  K  E  *  N  R  T  Q  Q  T  H  R   </second_frame>
            <third_frame>   H  R  K  I  Y  K  H  E  Q  Q  Q  A  S  *  F  Y  T  T  W  K  L  E  Q  W  R  V  A  *  S  *  F  T  W  T  *  V  H  M  A  T  Y  Y  P  S  S  S  A  S  T  R  Y  P  S   : E  S  *  T  C  R  S  *  S  T  V  A  S  N  R  E  T  I  S  S  T  Y  W  C  N  K  :  L  S  I  S  R  P  T  T  T  *  A  N  S  S  S  C  S  R  S  T  P  *  R  *  C  T  K  T  W  I  I  S  E  T  K  P  T  S  I  R  F  S  S  S  S  V  V  Y  A  E  Q  *  N  V  E  E  *  I  K  I  E  P  K  *  A  K  G  S  L  K  *  T  Q  E  R  N  L  Q  S  C  T  S  K  S  G  K  T  S  E  P  L  L  *  R  L  E  Q  Y  Y  H  Q  R  I  D  Q  G  Q  R  *  G  W  *  K  M  F  D  L  L  G  R  F  R  A  *  R  D  C  D  S  H  T  M  *  S  Y  V  P  R  R  L  H  R  S  M  G  D  K  S  W  L  V  P  C  L  S  I  C  Y  L  *  K  N  E  T  G  H  N  R  L  I  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33593" stop="33432"/>
                    <exon start="33340" stop="33264"/>
                    <exon start="33187" stop="32674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTEKFTNMNSNRPHNFTQHGNWSNGEWHDPNSHGPEYIWQPIIPRPPPPRDIPQNPRRVVHDPPLQVTERPFLVPTGATSYPYPGQPRRRLTHPPVRVLLHNDDVPRHGSYQRPSQLPFDSPPPPWFMQSNETSRNESKLSPNEQKAALNKLKKEIYNPVQAKVAKQVNLYFRGLNNTTTNESIKDKDEDGKRCSICLEDFEPKEIVTVTPCSHMFHEDCIVPWVTNHGSCPVCRFAICERMKQDTTDSST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="38889" PGL_stop="34160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38889" e_stop="38591"/>
            <exon e_start="36157" e_stop="36002"/>
            <exon e_start="35878" e_stop="35746"/>
            <exon e_start="35657" e_stop="35618"/>
            <exon e_start="35405" e_stop="35286"/>
            <exon e_start="35206" e_stop="34888"/>
            <exon e_start="34566" e_stop="34561"/>
            <exon e_start="34175" e_stop="34160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.674" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.535" acc_prob="0.911" e_score="0.833"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38889" e_stop="38591" e_length="299"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38590" i_stop="36158" i_length="2433"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36157" e_stop="36002" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="36001" i_stop="35879" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35878" e_stop="35746" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.674">
            <gDNA_intron_boundary i_start="35745" i_stop="35658" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35657" e_stop="35618" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.862">
            <gDNA_intron_boundary i_start="35617" i_stop="35406" i_length="212"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35405" e_stop="35286" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.898" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35285" i_stop="35207" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35206" e_stop="34888" e_length="319"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34887" i_stop="34567" i_length="321"/>
          </intron>
          <exon e_serial="7" e_score="0.833">
            <gDNA_exon_boundary e_start="34566" e_stop="34561" e_length="6"/>
          </exon>
          <intron i_serial="7" don_prob="0.535" acc_prob="0.911">
            <gDNA_intron_boundary i_start="34560" i_stop="34176" i_length="385"/>
          </intron>
          <exon e_serial="8" e_score="0.562">
            <gDNA_exon_boundary e_start="34175" e_stop="34160" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38889" stop="38591"/>
              <exon start="36157" stop="36002"/>
              <exon start="35878" stop="35746"/>
              <exon start="35657" stop="35618"/>
              <exon start="35405" stop="35303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38876" stop="38591"/>
              <exon start="36157" stop="36002"/>
              <exon start="35878" stop="35746"/>
              <exon start="35657" stop="35618"/>
              <exon start="35405" stop="35313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38876" stop="38591"/>
              <exon start="36157" stop="36002"/>
              <exon start="35878" stop="35746"/>
              <exon start="35657" stop="35618"/>
              <exon start="35405" stop="35370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38872" stop="38591"/>
              <exon start="36157" stop="36002"/>
              <exon start="35878" stop="35746"/>
              <exon start="35657" stop="35618"/>
              <exon start="35405" stop="35353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35760" stop="35746"/>
              <exon start="35657" stop="35618"/>
              <exon start="35405" stop="35286"/>
              <exon start="35206" stop="34888"/>
              <exon start="34566" stop="34561"/>
              <exon start="34175" stop="34160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308049" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35625" stop="35618"/>
              <exon start="35405" stop="35286"/>
              <exon start="35206" stop="34888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35625" stop="35618"/>
              <exon start="35405" stop="35286"/>
              <exon start="35206" stop="34888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35190" stop="34888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229655" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAGAGAGGAACAAAAAAACAAGAATGGGTTCATTGAGTGGTGGAAATGGAAGTATATGGGGAATGGGATTTTTCCATTCTCAAGAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCAAATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAG : GATATGATTGGTGCACTCCTATCTGAGCATGACTGGCTTCGGTCAGTCCGGATGGCTTCATATGGATTTTTGTTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCAAGCAAAGCGTGGAGAATGTAATGATGAAG : GTTTTATTAAACCAAATAGTGCTAGGTCCTTCTGTAATAGCTGTTATCTTTGCATGGAATAATTTATGGCTGGGAAAACTTTCAGAACTTCCAAACAAGTATCAGAAAGATGCCCTTCCAACTTTATTGTTCG : GATTTAGGTTCTGGATCCCTGTCAGCATTTTGAACTTTTG : GGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCTGGAATTTCTGTTTGTCAGCAACTATGAGCAAGTAACTACCGTCCAAAGGATTAGCTGGGAAGAGCAG : GATCCCGCAACTGATATAACCGCCTATCAAGACAGAGAAAATGATGTCTGGAGGCAACAGTTGAAACCATTCTGATTTTCCAAAAGTGGCTTGCACCAGGTTCTACAGTGCCTCAGCTCGCACTAACTACATATGATTTGTTTAGAATATAGTTTCCTTTAGTTTCCTAGTGCTATAACGAAAGACATATGTTTGGCTTGTTCGACCAATTCTTCCGTTGATTTGCTTTCTTTTGTCTGGTTTTTGGCATTCTTTTCCCTGTCTACACAATTTATAAACAAGTGCTGCTACATTATATATACGAAATCATCATGTTAAA : AAATAA : GTATACTAAAAATAGA</gDNA_template>
            <first_frame> E  K  R  G  T  K  K  Q  E  W  V  H  *  V  V  E  M  E  V  Y  G  E  W  D  F  S  I  L  K  N  G  I  L  E  E  E  E  G  E  V  M  V  E  N  R  Q  I  R  I  Q  W  M  Q  M  V  E  L  V  I  V  F  L  *  S  K  L  *  R  L  A  L  L  H  L  V  V  T  P  L  L  S  F  V  T  G  G  S  R  T  K  I  I  F  L  I  H  L  I  L  R :   I  *  L  V  H  S  Y  L  S  M  T  G  F  G  Q  S  G  W  L  H  M  D  F  C  Y  M  V  P  V  L  M  H  G  T  H  I  L  T  D  V  C  P  S  K  A  W  R  M  *  *  *  R :   F  Y  *  T  K  *  C  *  V  L  L  *  *  L  L  S  L  H  G  I  I  Y  G  W  E  N  F  Q  N  F  Q  T  S  I  R  K  M  P  F  Q  L  Y  C  S  :  D  L  G  S  G  S  L  S  A  F  *  T  F   : G  P  F  L  F  K  L  V  L  H  S  C  L  W  P  L  Y  S  G  I  S  V  C  Q  Q  L  *  A  S  N  Y  R  P  K  D  *  L  G  R  A   : G  S  R  N  *  Y  N  R  L  S  R  Q  R  K  *  C  L  E  A  T  V  E  T  I  L  I  F  Q  K  W  L  A  P  G  S  T  V  P  Q  L  A  L  T  T  Y  D  L  F  R  I  *  F  P  L  V  S  *  C  Y  N  E  R  H  M  F  G  L  F  D  Q  F  F  R  *  F  A  F  F  C  L  V  F  G  I  L  F  P  V  Y  T  I  Y  K  Q  V  L  L  H  Y  I  Y  E  I  I  M  L  K :   N  K :   Y  T  K  N  R </first_frame>
            <second_frame>  R  R  E  E  Q  K  N  K  N  G  F  I  E  W  W  K  W  K  Y  M  G  N  G  I  F  P  F  S  R  M  E  F  W  K  K  K  K  E  K  *  W  W  K  I  V  K  F  G  F  S  G  C  K  W  W  S  W  L  S  F  S  S  E  A  S  Y  D  G  *  L  S  C  T  *  W  *  H  H  C  S  A  S  *  P  V  A  Q  E  Q  R  *  S  S  *  S  I  S  S  *   : G  Y  D  W  C  T  P  I  *  A  *  L  A  S  V  S  P  D  G  F  I  W  I  F  V  I  W  S  R  Y  L  C  M  V  L  I  S  *  Q  M  Y  A  Q  A  K  R  G  E  C  N  D  E   : G  F  I  K  P  N  S  A  R  S  F  C  N  S  C  Y  L  C  M  E  *  F  M  A  G  K  T  F  R  T  S  K  Q  V  S  E  R  C  P  S  N  F  I  V  R :   I  *  V  L  D  P  C  Q  H  F  E  L  L  :  G  H  S  S  S  S  S  C  C  I  H  V  Y  G  L  Y  I  L  E  F  L  F  V  S  N  Y  E  Q  V  T  T  V  Q  R  I  S  W  E  E  Q  :  D  P  A  T  D  I  T  A  Y  Q  D  R  E  N  D  V  W  R  Q  Q  L  K  P  F  *  F  S  K  S  G  L  H  Q  V  L  Q  C  L  S  S  H  *  L  H  M  I  C  L  E  Y  S  F  L  *  F  P  S  A  I  T  K  D  I  C  L  A  C  S  T  N  S  S  V  D  L  L  S  F  V  W  F  L  A  F  F  S  L  S  T  Q  F  I  N  K  C  C  Y  I  I  Y  T  K  S  S  C  *   : K  I   : S  I  L  K  I   </second_frame>
            <third_frame>   E  E  R  N  K  K  T  R  M  G  S  L  S  G  G  N  G  S  I  W  G  M  G  F  F  H  S  Q  E  W  N  S  G  R  R  R  R  R  S  N  G  G  K  S  S  N  S  D  S  V  D  A  N  G  G  A  G  Y  R  F  P  L  K  Q  A  M  T  A  S  S  L  A  L  S  G  D  T  I  A  Q  L  R  D  R  W  L  K  N  K  D  N  L  P  D  P  S  H  P  K  :  D  M  I  G  A  L  L  S  E  H  D  W  L  R  S  V  R  M  A  S  Y  G  F  L  L  Y  G  P  G  T  Y  A  W  Y  S  Y  L  D  R  C  M  P  K  Q  S  V  E  N  V  M  M  K  :  V  L  L  N  Q  I  V  L  G  P  S  V  I  A  V  I  F  A  W  N  N  L  W  L  G  K  L  S  E  L  P  N  K  Y  Q  K  D  A  L  P  T  L  L  F   : G  F  R  F  W  I  P  V  S  I  L  N  F  W :   A  I  P  L  Q  A  R  V  A  F  M  S  M  A  S  I  F  W  N  F  C  L  S  A  T  M  S  K  *  L  P  S  K  G  L  A  G  K  S  R :   I  P  Q  L  I  *  P  P  I  K  T  E  K  M  M  S  G  G  N  S  *  N  H  S  D  F  P  K  V  A  C  T  R  F  Y  S  A  S  A  R  T  N  Y  I  *  F  V  *  N  I  V  S  F  S  F  L  V  L  *  R  K  T  Y  V  W  L  V  R  P  I  L  P  L  I  C  F  L  L  S  G  F  W  H  S  F  P  C  L  H  N  L  *  T  S  A  A  T  L  Y  I  R  N  H  H  V  K  :  K  *  :  V  Y  *  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38887" stop="38591"/>
                    <exon start="36157" stop="36002"/>
                    <exon start="35878" stop="35746"/>
                    <exon start="35657" stop="35618"/>
                    <exon start="35405" stop="35318"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EERNKKTRMGSLSGGNGSIWGMGFFHSQEWNSGRRRRRSNGGKSSNSDSVDANGGAGYRFPLKQAMTASSLALSGDTIAQLRDRWLKNKDNLPDPSHPKDMIGALLSEHDWLRSVRMASYGFLLYGPGTYAWYSYLDRCMPKQSVENVMMKVLLNQIVLGPSVIAVIFAWNNLWLGKLSELPNKYQKDALPTLLFGFRFWIPVSILNFWAIPLQARVAFMSMASIFWNFCLSATMSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38888" e_stop="38591"/>
            <exon e_start="36157" e_stop="35994"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.980"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="38888" e_stop="38591" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38590" i_stop="36158" i_length="2433"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="36157" e_stop="35994" e_length="164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38888" stop="38591"/>
              <exon start="36157" stop="35994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGAGAGGAACAAAAAAACAAGAATGGGTTCATTGAGTGGTGGAAATGGAAGTATATGGGGAATGGGATTTTTCCATTCTCAAGAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCAAATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAG : GATATGATTGGTGCACTCCTATCTGAGCATGACTGGCTTCGGTCAGTCCGGATGGCTTCATATGGATTTTTGTTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCAAGCAAAGCGTGGAGAATGTAATGATGAAGGTAGTTAT</gDNA_template>
            <first_frame> R  R  E  E  Q  K  N  K  N  G  F  I  E  W  W  K  W  K  Y  M  G  N  G  I  F  P  F  S  R  M  E  F  W  K  K  K  K  E  K  *  W  W  K  I  V  K  F  G  F  S  G  C  K  W  W  S  W  L  S  F  S  S  E  A  S  Y  D  G  *  L  S  C  T  *  W  *  H  H  C  S  A  S  *  P  V  A  Q  E  Q  R  *  S  S  *  S  I  S  S  *   : G  Y  D  W  C  T  P  I  *  A  *  L  A  S  V  S  P  D  G  F  I  W  I  F  V  I  W  S  R  Y  L  C  M  V  L  I  S  *  Q  M  Y  A  Q  A  K  R  G  E  C  N  D  E  G  S  Y </first_frame>
            <second_frame>  E  E  R  N  K  K  T  R  M  G  S  L  S  G  G  N  G  S  I  W  G  M  G  F  F  H  S  Q  E  W  N  S  G  R  R  R  R  R  S  N  G  G  K  S  S  N  S  D  S  V  D  A  N  G  G  A  G  Y  R  F  P  L  K  Q  A  M  T  A  S  S  L  A  L  S  G  D  T  I  A  Q  L  R  D  R  W  L  K  N  K  D  N  L  P  D  P  S  H  P  K  :  D  M  I  G  A  L  L  S  E  H  D  W  L  R  S  V  R  M  A  S  Y  G  F  L  L  Y  G  P  G  T  Y  A  W  Y  S  Y  L  D  R  C  M  P  K  Q  S  V  E  N  V  M  M  K  V  V   </second_frame>
            <third_frame>   K  R  G  T  K  K  Q  E  W  V  H  *  V  V  E  M  E  V  Y  G  E  W  D  F  S  I  L  K  N  G  I  L  E  E  E  E  G  E  V  M  V  E  N  R  Q  I  R  I  Q  W  M  Q  M  V  E  L  V  I  V  F  L  *  S  K  L  *  R  L  A  L  L  H  L  V  V  T  P  L  L  S  F  V  T  G  G  S  R  T  K  I  I  F  L  I  H  L  I  L  R :   I  *  L  V  H  S  Y  L  S  M  T  G  F  G  Q  S  G  W  L  H  M  D  F  C  Y  M  V  P  V  L  M  H  G  T  H  I  L  T  D  V  C  P  S  K  A  W  R  M  *  *  *  R  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38887" stop="38591"/>
                    <exon start="36157" stop="35996"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EERNKKTRMGSLSGGNGSIWGMGFFHSQEWNSGRRRRRSNGGKSSNSDSVDANGGAGYRFPLKQAMTASSLALSGDTIAQLRDRWLKNKDNLPDPSHPKDMIGALLSEHDWLRSVRMASYGFLLYGPGTYAWYSYLDRCMPKQSVENVMMKVV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="46988" PGL_stop="45784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46988" e_stop="46917"/>
            <exon e_start="46822" e_stop="46438"/>
            <exon e_start="46359" e_stop="45784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46988" e_stop="46917" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.987">
            <gDNA_intron_boundary i_start="46916" i_stop="46823" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46822" e_stop="46438" e_length="385"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.989">
            <gDNA_intron_boundary i_start="46437" i_stop="46360" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46359" e_stop="45784" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46988" stop="46917"/>
              <exon start="46822" stop="46438"/>
              <exon start="46359" stop="46198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46626" stop="46438"/>
              <exon start="46359" stop="45784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545486" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGAACTTCAAACAGAACAAGCTCAGTATTTCATTGAAGCTGTACGCTCCGTTTATATCCCAGGGTGGAG : TTTTTTGCCAACAAAGAGGAATCGAAGAATGAAGGAAATCGAGAAGCATGTTCAGGCTACAATTAGAGGAATTATTGATAAAAGAGTGAAGGCAATGACAGGAGGAGAGGCGAATAACAAGGATCTACTTGGTATATTGCTCGAATCAAATTTTAAAGAAATCAAACAACATGGAGACAAGGACTTTGGACTTAGCATCGAAGAAGTCATTGAAGAATGCAAGTTGTTCTATTTTGCTGGACAAGAAACTACATCGGCGTTGCTTGTATGGACTCTAATTTTGTTGTGCAGACATCACGATTGGCAGACACGGGCCAGAACAGAGGTATTGCAAGTGTTTGGGAGTCGGAAACCAGATTTTGATGGACTGACTCATCTAAAAGTA : GTGACAATGATCTTGTACGAATCGTTAAGGTTATACCCTCCAGTAACGACAGTTACACGCCGGCTTAATGAAGATGCTGTACTAGGAGATATATCTCTACCAGCAGACGTGCTACTCTCATTACCAGCGGTCTTATTACACCACGATGAAGAGATATGGGGTGAAGACGCAAAGAAATTCAATCCAGAGAGATTTAGAGAAGGCGTTTCAAGTGCAACAAAGGGTCAAGTCACTTTCTTCCCGTTTACATGGGGTCCTAGAATATGCATTGGACAAAACTTCGCTATGTTAGAAGCAAAGATGGTGTTGGCTATGATCCTACAACGTTTCTCATTGGATTTATCCACATCTTATACTCATGCTCTTCATTCCGTTATAACTACGCAACCCCAATATGGTGCTCCACTTATTTTACACAAACTATAGTTTGTACTTGTAAGCAGTGTCTTGTTATATGTTAAGAGAGAGTTCAAACATGATTAATAAAGGCTTGTAGAACTGCCTATTGTTTGTTTTAGAGTTTCAAGTGTGCAGATACTGTATATGGAAAATCTACAACATCCAAGTAATTTACTT</gDNA_template>
            <first_frame> I  *  T  S  N  R  T  S  S  V  F  H  *  S  C  T  L  R  L  Y  P  R  V  E  :  F  F  A  N  K  E  E  S  K  N  E  G  N  R  E  A  C  S  G  Y  N  *  R  N  Y  *  *  K  S  E  G  N  D  R  R  R  G  E  *  Q  G  S  T  W  Y  I  A  R  I  K  F  *  R  N  Q  T  T  W  R  Q  G  L  W  T  *  H  R  R  S  H  *  R  M  Q  V  V  L  F  C  W  T  R  N  Y  I  G  V  A  C  M  D  S  N  F  V  V  Q  T  S  R  L  A  D  T  G  Q  N  R  G  I  A  S  V  W  E  S  E  T  R  F  *  W  T  D  S  S  K  S   : S  D  N  D  L  V  R  I  V  K  V  I  P  S  S  N  D  S  Y  T  P  A  *  *  R  C  C  T  R  R  Y  I  S  T  S  R  R  A  T  L  I  T  S  G  L  I  T  P  R  *  R  D  M  G  *  R  R  K  E  I  Q  S  R  E  I  *  R  R  R  F  K  C  N  K  G  S  S  H  F  L  P  V  Y  M  G  S  *  N  M  H  W  T  K  L  R  Y  V  R  S  K  D  G  V  G  Y  D  P  T  T  F  L  I  G  F  I  H  I  L  Y  S  C  S  S  F  R  Y  N  Y  A  T  P  I  W  C  S  T  Y  F  T  Q  T  I  V  C  T  C  K  Q  C  L  V  I  C  *  E  R  V  Q  T  *  L  I  K  A  C  R  T  A  Y  C  L  F  *  S  F  K  C  A  D  T  V  Y  G  K  S  T  T  S  K  *  F  T  </first_frame>
            <second_frame>  F  E  L  Q  T  E  Q  A  Q  Y  F  I  E  A  V  R  S  V  Y  I  P  G  W  S :   F  L  P  T  K  R  N  R  R  M  K  E  I  E  K  H  V  Q  A  T  I  R  G  I  I  D  K  R  V  K  A  M  T  G  G  E  A  N  N  K  D  L  L  G  I  L  L  E  S  N  F  K  E  I  K  Q  H  G  D  K  D  F  G  L  S  I  E  E  V  I  E  E  C  K  L  F  Y  F  A  G  Q  E  T  T  S  A  L  L  V  W  T  L  I  L  L  C  R  H  H  D  W  Q  T  R  A  R  T  E  V  L  Q  V  F  G  S  R  K  P  D  F  D  G  L  T  H  L  K  V  :  V  T  M  I  L  Y  E  S  L  R  L  Y  P  P  V  T  T  V  T  R  R  L  N  E  D  A  V  L  G  D  I  S  L  P  A  D  V  L  L  S  L  P  A  V  L  L  H  H  D  E  E  I  W  G  E  D  A  K  K  F  N  P  E  R  F  R  E  G  V  S  S  A  T  K  G  Q  V  T  F  F  P  F  T  W  G  P  R  I  C  I  G  Q  N  F  A  M  L  E  A  K  M  V  L  A  M  I  L  Q  R  F  S  L  D  L  S  T  S  Y  T  H  A  L  H  S  V  I  T  T  Q  P  Q  Y  G  A  P  L  I  L  H  K  L  *  F  V  L  V  S  S  V  L  L  Y  V  K  R  E  F  K  H  D  *  *  R  L  V  E  L  P  I  V  C  F  R  V  S  S  V  Q  I  L  Y  M  E  N  L  Q  H  P  S  N  L  L </second_frame>
            <third_frame>   L  N  F  K  Q  N  K  L  S  I  S  L  K  L  Y  A  P  F  I  S  Q  G  G   : V  F  C  Q  Q  R  G  I  E  E  *  R  K  S  R  S  M  F  R  L  Q  L  E  E  L  L  I  K  E  *  R  Q  *  Q  E  E  R  R  I  T  R  I  Y  L  V  Y  C  S  N  Q  I  L  K  K  S  N  N  M  E  T  R  T  L  D  L  A  S  K  K  S  L  K  N  A  S  C  S  I  L  L  D  K  K  L  H  R  R  C  L  Y  G  L  *  F  C  C  A  D  I  T  I  G  R  H  G  P  E  Q  R  Y  C  K  C  L  G  V  G  N  Q  I  L  M  D  *  L  I  *  K  * :   *  Q  *  S  C  T  N  R  *  G  Y  T  L  Q  *  R  Q  L  H  A  G  L  M  K  M  L  Y  *  E  I  Y  L  Y  Q  Q  T  C  Y  S  H  Y  Q  R  S  Y  Y  T  T  M  K  R  Y  G  V  K  T  Q  R  N  S  I  Q  R  D  L  E  K  A  F  Q  V  Q  Q  R  V  K  S  L  S  S  R  L  H  G  V  L  E  Y  A  L  D  K  T  S  L  C  *  K  Q  R  W  C  W  L  *  S  Y  N  V  S  H  W  I  Y  P  H  L  I  L  M  L  F  I  P  L  *  L  R  N  P  N  M  V  L  H  L  F  Y  T  N  Y  S  L  Y  L  *  A  V  S  C  Y  M  L  R  E  S  S  N  M  I  N  K  G  L  *  N  C  L  L  F  V  L  E  F  Q  V  C  R  Y  C  I  W  K  I  Y  N  I  Q  V  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46987" stop="46917"/>
                    <exon start="46822" stop="46438"/>
                    <exon start="46359" stop="45934"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FELQTEQAQYFIEAVRSVYIPGWSFLPTKRNRRMKEIEKHVQATIRGIIDKRVKAMTGGEANNKDLLGILLESNFKEIKQHGDKDFGLSIEEVIEECKLFYFAGQETTSALLVWTLILLCRHHDWQTRARTEVLQVFGSRKPDFDGLTHLKVVTMILYESLRLYPPVTTVTRRLNEDAVLGDISLPADVLLSLPAVLLHHDEEIWGEDAKKFNPERFREGVSSATKGQVTFFPFTWGPRICIGQNFAMLEAKMVLAMILQRFSLDLSTSYTHALHSVITTQPQYGAPLILHKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="65763" PGL_stop="66411"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65763" e_stop="66411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="65763" e_stop="66411" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65763" stop="66411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65764" stop="66148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAATGAGAGCGATTTAAAAGAACCTGAAAAGGAGGATCAAAAGCCACAGACAGAAACTGATATCCCAGAATCTATGCCATCAGATATCCATCGGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGCCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAAGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGACAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGAGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATTTGGAGCTTGAACAACTTGATGTGAAGACAACGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  *  T  G  G  V  S  S  H  S  E  *  E  R  F  K  R  T  *  K  G  G  S  K  A  T  D  R  N  *  Y  P  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  P  *  F  *  K  M  V  C  C  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  R  R  D  I  T  S  R  R  S  Q  V  *  R  Q  G  C  C  *  R  F  Q  P  K  R  E  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  Y  T  S  E  F  G  A  *  T  T  *  C  E  D  N  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  K  E  D  Q  K  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  R  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  D  R  V  V  A  R  G  F  N  Q  R  E  R  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  T  H  Q  N  L  E  L  E  Q  L  D  V  K  T  T  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  I  N  R  W  S  F  K  S  F  R  M  R  A  I  *  K  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  S  Q  N  L  C  H  Q  I  S  I  G  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  A  L  I  L  K  N  G  L  L  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  K  K  G  Y  H  Q  Q  K  E  S  S  I  K  T  G  L  L  L  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65764" stop="66411"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEKEDQKPQTETDIPESMPSDIHRSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSPDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKDRVVARGFNQRERVDYNEIFSPVVRHTSIRVLLAIVTHQNLELEQLDVKTTFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="66422" PGL_stop="67229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66422" e_stop="67229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="66422" e_stop="67229" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66422" stop="67229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGAAAGCTATATGGTGATGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCACTCGAAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTGCCAATATCCATCTCACGACCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTTTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAAAGAACATTGGCAGGCTGTGAAGAGAATTTTTCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGATATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTTGAAGACAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  K  A  I  W  *  C  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  R  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  E  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  L  L  I  P  P  V  L  P  I  S  I  S  R  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  F  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  K  N  I  G  R  L  *  R  E  F  F  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  L  T  M  L  E  M  L  T  Q  E  D  R  *  L  D  M  C  L  P  L  E  D  L  S  S  V  *  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  K  L  Y  G  D  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  G  *  F  I  H  L  S  G  A  L  C  R  *  Y  A  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  H  S  K  D  S  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  Y  *  Y  P  Q  C  C  Q  Y  P  S  H  D  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  S  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  *  L  C  W  R  C  *  H  K  K  I  D  D  W  I  C  V  Y  P  W  R  I  C  R  Q  F  E  D  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  E  S  Y  M  V  M  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  T  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  T  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  K  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  L  K  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66424" stop="67227"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFESYMVMLGYTRSSYDCCVYYNRLKDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGATRKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTTMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGKEHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSLKTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="72193" PGL_stop="86393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72193" e_stop="72419"/>
            <exon e_start="86084" e_stop="86393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.916"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="72193" e_stop="72419" e_length="227"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72420" i_stop="86083" i_length="13664"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="86084" e_stop="86393" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72193" stop="72419"/>
              <exon start="86084" stop="86393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243194" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGAGAGGTTCTCTGTGTTGAGACATAAATTTTGTAAAGGAGATTATGGAGAGGAGAAGCAAGTTGTTGAAGATTAAGTAAAGAAAGTGGACAAATTTATTTTGTCAGAAACTCAGGCCAAGGGGGAGATTTGTTGGGTTTTATTTGCCCTGATTTCTTACCATAAATAGGTTTTCATTTTAGGAAAAGGTTTTGAATTGACTATTCTTTTTTTGGTAGGAAAAG : GTTTTGGATTGACTAATCCTTTTTCTGGTAGGAAAAAATTTAGGACTCTATAAATAGAGGTATGTTCCTTCTAACTTAATCAGCATTCACAATGTAGTCTTTAAGGGCTTTGAGAGTTTTGATTAGGGGTAGAATTTATGGGTCACAAGCTTGATACGTTATCACTTGTGTGAACCTCCCATGTATTCTGAGTGAATTGGTAGAGGTTGTTTCTCTCTGTAATTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTTGGTCGATTGACCGAACCACGTTAAATCTTTGTGTCTTTT</gDNA_template>
            <first_frame> F  R  E  V  L  C  V  E  T  *  I  L  *  R  R  L  W  R  G  E  A  S  C  *  R  L  S  K  E  S  G  Q  I  Y  F  V  R  N  S  G  Q  G  G  D  L  L  G  F  I  C  P  D  F  L  P  *  I  G  F  H  F  R  K  R  F  *  I  D  Y  S  F  F  G  R  K  R :   F  W  I  D  *  S  F  F  W  *  E  K  I  *  D  S  I  N  R  G  M  F  L  L  T  *  S  A  F  T  M  *  S  L  R  A  L  R  V  L  I  R  G  R  I  Y  G  S  Q  A  *  Y  V  I  T  C  V  N  L  P  C  I  L  S  E  L  V  E  V  V  S  L  C  N  L  Y  S  H  I  Y  S  G  L  L  I  S  F  V  D  V  G  R  L  T  E  P  R  *  I  F  V  S  F </first_frame>
            <second_frame>  S  E  R  F  S  V  L  R  H  K  F  C  K  G  D  Y  G  E  E  K  Q  V  V  E  D  *  V  K  K  V  D  K  F  I  L  S  E  T  Q  A  K  G  E  I  C  W  V  L  F  A  L  I  S  Y  H  K  *  V  F  I  L  G  K  G  F  E  L  T  I  L  F  L  V  G  K   : G  F  G  L  T  N  P  F  S  G  R  K  K  F  R  T  L  *  I  E  V  C  S  F  *  L  N  Q  H  S  Q  C  S  L  *  G  L  *  E  F  *  L  G  V  E  F  M  G  H  K  L  D  T  L  S  L  V  *  T  S  H  V  F  *  V  N  W  *  R  L  F  L  S  V  I  C  T  L  I  F  I  V  D  C  S  S  P  L  W  T  L  V  D  *  P  N  H  V  K  S  L  C  L   </second_frame>
            <third_frame>   Q  R  G  S  L  C  *  D  I  N  F  V  K  E  I  M  E  R  R  S  K  L  L  K  I  K  *  R  K  W  T  N  L  F  C  Q  K  L  R  P  R  G  R  F  V  G  F  Y  L  P  *  F  L  T  I  N  R  F  S  F  *  E  K  V  L  N  *  L  F  F  F  W  *  E  K  :  V  L  D  *  L  I  L  F  L  V  G  K  N  L  G  L  Y  K  *  R  Y  V  P  S  N  L  I  S  I  H  N  V  V  F  K  G  F  E  S  F  D  *  G  *  N  L  W  V  T  S  L  I  R  Y  H  L  C  E  P  P  M  Y  S  E  *  I  G  R  G  C  F  S  L  *  F  V  L  S  Y  L  *  W  I  A  H  L  L  C  G  R  W  S  I  D  R  T  T  L  N  L  C  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0020F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="84351" PGL_stop="83294"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84351" e_stop="84059"/>
            <exon e_start="83637" e_stop="83294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.915"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="84351" e_stop="84059" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84058" i_stop="83638" i_length="421"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="83637" e_stop="83294" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84351" stop="84059"/>
              <exon start="83637" stop="83294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212523" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTTAGTAGTAAGCTTGGGAAGGAGGATTTGGCTCTGTTTATAAAGGAACACTGCGAGATGGCACCAAAATAGCTGTGAAGCATCTGGATGGTGTAGGTCAAGTAAAGGAATCATTCTTAACAGAAGTTAAGGCGGTCGGTGGCATTCACCATATCAACTTGGTAAAACTCATCGGATTTTGTGCTGAAAAATGCCACAGGCTTCTAATCTATGAGTACATGGTGAATGGATCACTGGATAGGTGGATTATACATGAAAACTGAGAAAATGGGCTTACATGGAGCACAAG : GCAGAGGATAATATCAGATATCGCCAAAGGGTTAGCGTATCTACATGAAGATTGCAGCCAAAAGATAATTCATTTGGACATCAAACCACAAAACAGCCTTCTGGATCAATATCTCAATGCCAAGATATCAGATTTTGGGTTGTTGAAGCTAATTGAGAAAGACAAAAGCAACGTTTTGACTAGAATGAGAGGAAAACGGGGTTATTTAGCCCCTGAATGGTTGAGCTCCGTAATCACTGAGAAAGTTTATGTTTATGCTTTTGGAATAGTCTTCTTGGAAATTCTCTGTGGGCGAAAGAATTTGGATAGGTCCCAAGCTGATGAAGAAGATGTCCATTTGCTAA</gDNA_template>
            <first_frame> R  F  *  *  *  A  W  E  G  G  F  G  S  V  Y  K  G  T  L  R  D  G  T  K  I  A  V  K  H  L  D  G  V  G  Q  V  K  E  S  F  L  T  E  V  K  A  V  G  G  I  H  H  I  N  L  V  K  L  I  G  F  C  A  E  K  C  H  R  L  L  I  Y  E  Y  M  V  N  G  S  L  D  R  W  I  I  H  E  N  *  E  N  G  L  T  W  S  T  R :   Q  R  I  I  S  D  I  A  K  G  L  A  Y  L  H  E  D  C  S  Q  K  I  I  H  L  D  I  K  P  Q  N  S  L  L  D  Q  Y  L  N  A  K  I  S  D  F  G  L  L  K  L  I  E  K  D  K  S  N  V  L  T  R  M  R  G  K  R  G  Y  L  A  P  E  W  L  S  S  V  I  T  E  K  V  Y  V  Y  A  F  G  I  V  F  L  E  I  L  C  G  R  K  N  L  D  R  S  Q  A  D  E  E  D  V  H  L  L  </first_frame>
            <second_frame>  D  F  S  S  K  L  G  K  E  D  L  A  L  F  I  K  E  H  C  E  M  A  P  K  *  L  *  S  I  W  M  V  *  V  K  *  R  N  H  S  *  Q  K  L  R  R  S  V  A  F  T  I  S  T  W  *  N  S  S  D  F  V  L  K  N  A  T  G  F  *  S  M  S  T  W  *  M  D  H  W  I  G  G  L  Y  M  K  T  E  K  M  G  L  H  G  A  Q   : G  R  G  *  Y  Q  I  S  P  K  G  *  R  I  Y  M  K  I  A  A  K  R  *  F  I  W  T  S  N  H  K  T  A  F  W  I  N  I  S  M  P  R  Y  Q  I  L  G  C  *  S  *  L  R  K  T  K  A  T  F  *  L  E  *  E  E  N  G  V  I  *  P  L  N  G  *  A  P  *  S  L  R  K  F  M  F  M  L  L  E  *  S  S  W  K  F  S  V  G  E  R  I  W  I  G  P  K  L  M  K  K  M  S  I  C  * </second_frame>
            <third_frame>   I  L  V  V  S  L  G  R  R  I  W  L  C  L  *  R  N  T  A  R  W  H  Q  N  S  C  E  A  S  G  W  C  R  S  S  K  G  I  I  L  N  R  S  *  G  G  R  W  H  S  P  Y  Q  L  G  K  T  H  R  I  L  C  *  K  M  P  Q  A  S  N  L  *  V  H  G  E  W  I  T  G  *  V  D  Y  T  *  K  L  R  K  W  A  Y  M  E  H  K  :  A  E  D  N  I  R  Y  R  Q  R  V  S  V  S  T  *  R  L  Q  P  K  D  N  S  F  G  H  Q  T  T  K  Q  P  S  G  S  I  S  Q  C  Q  D  I  R  F  W  V  V  E  A  N  *  E  R  Q  K  Q  R  F  D  *  N  E  R  K  T  G  L  F  S  P  *  M  V  E  L  R  N  H  *  E  S  L  C  L  C  F  W  N  S  L  L  G  N  S  L  W  A  K  E  F  G  *  V  P  S  *  *  R  R  C  P  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84084" stop="84059"/>
                    <exon start="83637" stop="83295"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENGLTWSTRQRIISDIAKGLAYLHEDCSQKIIHLDIKPQNSLLDQYLNAKISDFGLLKLIEKDKSNVLTRMRGKRGYLAPEWLSSVITEKVYVYAFGIVFLEILCGRKNLDRSQADEEDVHLL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84336" stop="84085"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AWEGGFGSVYKGTLRDGTKIAVKHLDGVGQVKESFLTEVKAVGGIHHINLVKLIGFCAEKCHRLLIYEYMVNGSLDRWIIHEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="95542" PGL_stop="94946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95542" e_stop="95358"/>
            <exon e_start="95278" e_stop="94946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.951"/>
          <exon-only e_score="0.892"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="95542" e_stop="95358" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95357" i_stop="95279" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.892">
            <gDNA_exon_boundary e_start="95278" e_stop="94946" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95542" stop="95358"/>
              <exon start="95278" stop="94946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCGCGTTCCGACACCAAGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATG : GATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATTGAGTAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAGTCTTGAAAGACGATAATATATTCAAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTATCTGATATATACT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  M  D  R  V  S  R  S  D  T  K  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  W :   I  G  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  Y  I  E  *  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  K  T  I  I  Y  S  N  L  M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  I  *  Y  I   </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  I  W  I  G  C  R  V  P  T  P  R  *  Y  M  D  R  V  P  R  S  G  T  R  I  V  Y   : G  S  E  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  S  I  L  S  S  G  V  S  R  T  D  T  R  G  I  K  I  M  S  L  E  R  R  *  Y  I  Q  I  *  *  T  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  N  F  M  I  L  S  D  I  Y  </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  C  I  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  Y  G  S  G  V  A  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  :  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  V  Y  *  V  A  E  C  H  V  P  T  R  G  E  *  R  *  *  V  L  K  D  D  N  I  F  K  S  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  Y  L  I  Y  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95491" stop="95358"/>
                    <exon start="95278" stop="95173"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKVVRLGDRVPRSGTRIEYMDRVSRSDTKIVYGSGATFRYQDSIWIGVSRSDTRIVYGSGATFRYQDRIWIGCHVPTPG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="96308" PGL_stop="95651"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96308" e_stop="95651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="96308" e_stop="95651" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96308" stop="95651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAACTGGCAGAAGCGACAGACCCCACGATGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGCGATGACCTGCAGGACGGACCGTCGCAGGCACAACGGGCCGTCACAGACTGCGAAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGATGTTTTGGACTATTCCTACTTTAATAATAAAGTTAGAGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGTCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAACACAAAGAATAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAAAACACAAAGCTTGGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATT</gDNA_template>
            <first_frame> E  K  L  A  E  A  T  D  P  T  M  D  R  H  G  H  D  G  P  S  Q  G  L  V  S  K  H  L  E  N  L  K  L  G  T  E  N  R  L  S  E  L  R  N  G  M  A  G  R  T  V  T  G  V  T  D  R  H  R  L  F  S  G  N  *  V  S  D  P  C  D  D  L  Q  D  G  P  S  Q  A  Q  R  A  V  T  D  C  E  I  P  V  W  V  G  F  L  Y  T  F  *  G  M  F  W  T  I  P  T  L  I  I  K  L  E  G  *  C  *  *  V  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  V  I  I  V  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  V  *  I  K  K  T  Q  R  I  R  E  R  E  R  K  S  N  E  K  E  D  R  T  R  G  K  K  T  Q  S  L  G  N  H  L  L  D  H  E  S  S  V  E  V  G  Y  G  F  H  A  I  R  S  K  L  L  I  A  N  D  M  C  *  *  Y  </first_frame>
            <second_frame>  K  N  W  Q  K  R  Q  T  P  R  W  T  V  M  G  T  T  D  R  R  R  V  S  F  Q  N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  R  T  V  T  D  Y  S  V  E  I  E  S  L  T  L  A  M  T  C  R  T  D  R  R  R  H  N  G  P  S  Q  T  A  K  S  Q  S  G  S  D  F  F  T  R  F  K  G  C  F  G  L  F  L  L  *  *  *  S  *  R  V  N  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  K  L  I  S  G  L  L  L  S  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G  F  E  *  R  K  H  K  E  *  E  K  E  R  E  S  R  T  R  K  R  I  E  R  E  E  K  K  H  K  A  W  E  I  T  C  L  I  T  N  L  R  W  R  *  V  M  V  F  M  L  F  V  V  N  S  *  *  R  M  I  C  V  S  S  I </second_frame>
            <third_frame>   K  T  G  R  S  D  R  P  H  D  G  P  S  W  A  R  R  T  V  A  G  S  R  F  K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  Q  I  I  Q  W  K  L  S  L  *  P  L  R  *  P  A  G  R  T  V  A  G  T  T  G  R  H  R  L  R  N  P  S  L  G  R  I  S  L  H  V  L  R  D  V  L  D  Y  S  Y  F  N  N  K  V  R  G  L  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  E  G  L  N  K  E  N  T  K  N  K  R  K  R  E  K  V  E  R  E  R  G  S  N  E  R  K  K  N  T  K  L  G  K  S  L  A  *  S  R  I  F  G  G  G  R  L  W  F  S  C  Y  S  *  *  T  L  N  S  E  *  Y  V  L  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96308" stop="96114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKLAEATDPTMDRHGHDGPSQGLVSKHLENLKLGTENRLSELRNGMAGRTVTGVTDRHRLFSGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="97012" PGL_stop="97188"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97012" e_stop="97188"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="97012" e_stop="97188" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97012" stop="97188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAAACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  N  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  P  F  K  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0020F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="98499" PGL_stop="102474"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98499" e_stop="100147"/>
            <exon e_start="101497" e_stop="102474"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.937"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="98499" e_stop="100147" e_length="1649"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="100148" i_stop="101496" i_length="1349"/>
          </intron>
          <exon e_serial="2" e_score="0.901">
            <gDNA_exon_boundary e_start="101497" e_stop="102474" e_length="978"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98499" stop="99199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98499" stop="99082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98499" stop="99012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98558" stop="99237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98558" stop="98916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99007" stop="99665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99076" stop="99837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99076" stop="99736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99479" stop="99809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99686" stop="100147"/>
              <exon start="101497" stop="101593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99770" stop="100147"/>
              <exon start="101497" stop="101908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99846" stop="100147"/>
              <exon start="101497" stop="101892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101756" stop="102474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101759" stop="102421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCGGCGGTAGTAGCTAGCTAACCCAATAAAGCTCCTTATTTCTGACACGTTAGTGGGTCTTACCCAATTCTTCACTGTCTCAACCTTAGAAGGATCCACCATCACTCCTTACTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCATTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAACACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGGGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTGTAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAGAAACTTATGGACCACCGAAACTGACTCAATCGAAGGTACATGGGTAGTGTCGTCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGTTTGGCTAACGTCACTGTTTTAGAATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAATTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAGCAATGGGCCCTCTCACCCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGGTTGCCCATCACCTCAGCCATTCTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAG : GTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTTGAACTGCGTAACCTCCGGAACCTTGTCCTCTAGAGCAAGAACCATTAAACTCACCTCTCTTTCGAAACCTTTTTGATGTCGATGTCGAGGTGAAGTCATCGGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGGAAGGATTTTGCTGTAGCCGCTACCTGTAAGGCCGAAATTCGCAACTCTGATCTCAACCCCTTCACAAACCGGCGAATCCTCTCTTGTGGACTGAAACAAAGTTGCGTGGCATATCTGGATAGTGCGTGAAACCTAGCCTCGTAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTCTTCCTATCCCTCAAAGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTCGGTTGACACTCAACATCTGATCGCCACCACATTTTGGCGTTCCCTTGAAACTTATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAATTTCATGTTGATCATTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGTTTATTTCCAATGGAACATCCATGCTGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTTGTTCATTCTCCCCATCATCCCCTTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATTAGATGGGTT</gDNA_template>
            <first_frame> K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  V  S  G  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  L  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  I  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  N  T  L  *  L  I  E  Q  V  I  N  A  G  K  G  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  V  R  G  Y  R  N  G  A  S  T  R  F  K  V  N  T  E  I  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  *  K  L  M  D  H  R  N  *  L  N  R  R  Y  M  G  S  V  V  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  M  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  N  *  R  I  C  P  R  F  G  *  R  H  C  F  R  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  Q  D  N  Q  I  Y  I  S  V  A  P  H  K  F  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  A  M  G  P  L  T  R  L  S  V  A  P  T  M  L  *  C  S  G  S  R  L  P  I  T  S  A  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  A  M  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R :   W  T  P  N  Y  S  L  *  *  R  L  N  G  L  N  C  V  T  S  G  T  L  S  S  R  A  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  G  E  V  I  G  L  H  S  F  H  L  Y  H  E  V  Y  H  F  L  E  G  F  C  C  S  R  Y  L  *  G  R  N  S  Q  L  *  S  Q  P  L  H  K  P  A  N  P  L  L  W  T  E  T  K  L  R  G  I  S  G  *  C  V  K  P  S  L  V  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  L  P  I  P  Q  S  P  R  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  R  L  T  L  N  I  *  S  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  M  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  I  S  C  *  S  F  V  I  T  G  P  V  V  R  R  G  N  V  F  I  S  N  G  T  S  M  L  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  L  D  G   </first_frame>
            <second_frame>  N  R  R  *  *  L  A  N  P  I  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  T  L  E  G  S  T  I  T  P  Y  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  M  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  L  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  T  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  I  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  L  W  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  *  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  Q  T  N  G  S  V  P  G  L  A  N  V  T  V  L  E  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  N  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  P  V  C  P  L  P  L  P  C  C  D  V  V  A  P  G  C  P  S  P  Q  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G   : G  G  P  P  T  T  V  C  S  E  D  *  M  G  *  T  A  *  P  P  E  P  C  P  L  E  Q  E  P  L  N  S  P  L  F  R  N  L  F  D  V  D  V  E  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  L  S  C  G  L  K  Q  S  C  V  A  Y  L  D  S  A  *  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  S  D  R  H  H  I  L  A  F  P  *  N  L  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  F  H  V  D  H  L  S  L  Q  A  L  *  S  D  E  E  M  C  L  F  P  M  E  H  P  C  W  E  P  *  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  S  A  L  V  H  S  P  H  H  P  L  L  L  L  L  L  Q  S  V  E  E  S  P  P  *  Y  *  M  G  </second_frame>
            <third_frame>   I  G  G  S  S  *  L  T  Q  *  S  S  L  F  L  T  R  *  W  V  L  P  N  S  S  L  S  Q  P  *  K  D  P  P  S  L  L  T  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  *  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  H  *  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  G  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  S  Q  T  K  S  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  C  K  G  V  *  K  W  G  E  Y  P  V  Q  G  Q  Y  R  N  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  L  E  T  Y  G  P  P  K  L  T  Q  S  K  V  H  G  *  C  R  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  K  L  T  D  L  S  Q  V  W  L  T  S  L  F  *  N  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  P  R  *  P  N  L  H  K  C  C  S  P  Q  I  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  S  N  G  P  S  H  P  S  V  R  C  P  Y  H  V  V  M  *  W  L  Q  V  A  H  H  L  S  H  S  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  C  H  D  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  :  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  R  N  L  R  N  L  V  L  *  S  K  N  H  *  T  H  L  S  F  E  T  F  L  M  S  M  S  R  *  S  H  R  A  S  L  L  P  P  L  S  R  S  L  P  L  L  G  R  I  L  L  *  P  L  P  V  R  P  K  F  A  T  L  I  S  T  P  S  Q  T  G  E  S  S  L  V  D  *  N  K  V  A  W  H  I  W  I  V  R  E  T  *  P  R  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  S  S  Y  P  S  K  S  E  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  S  V  D  T  Q  H  L  I  A  T  T  F  W  R  S  L  E  T  Y  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  Y  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  N  F  M  L  I  I  C  H  Y  R  P  C  S  Q  T  R  K  C  V  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  L  H  L  F  I  L  P  I  I  P  F  S  Y  Y  F  F  S  R  W  R  S  H  R  P  S  I  R  W  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101550" stop="101813"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPEPCPLEQEPLNSPLFRNLFDVDVEVKSSGFTPSTSITKSTTSWKDFAVAATCKAEIRNSDLNPFTNRRILSCGLKQSCVAYLDSA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99918" stop="100147"/>
                    <exon start="101497" stop="101521"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSRLPITSAILVTTITSTTTSSRITASAMTTSTSNIWRSVTLFWTISLNMSNLPTSIALSGFMHRSLREVLTGRRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98751" stop="98990"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERIRGIRKTKRHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTNTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99501" stop="99710"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHCFRITIQDRKLRRKPSHTQNYIKIIHFQDNQIYISVAPHKFHQTRPIYLFNYHRLTHRSRNTNRHIK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99214" stop="99423"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNLWTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98683" stop="98880"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINMITKRSKYGLKIPFIKLMNALGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="101852" PGL_stop="99059"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101852" e_stop="101666"/>
            <exon e_start="99572" e_stop="99059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.898"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.898">
            <gDNA_exon_boundary e_start="101852" e_stop="101666" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101665" i_stop="99573" i_length="2093"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="99572" e_stop="99059" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101852" stop="101666"/>
              <exon start="99572" stop="99059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGCTTACGAGGCTAGGTTTCACGCACTATCCAGATATGCCACGCAACTTTGTTTCAGTCCACAAGAGAGGATTCGCCGGTTTGTGAAGGGGTTGAGATCAGAGTTGCGAATTTCGGCCTTACAGGTAGCGGCTACAGCAAAATCCTTCCAAGAAGTGGTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATTCTAAAACAGTGACGTTAGCCAAACCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCATGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGACGACACTACCCATGTACCTTCGATTGAGTCAGTTTCGGTGGTCCATAAGTTTCTAGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTCTGTATTGACCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTACAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  R  G  *  V  S  R  T  I  Q  I  C  H  A  T  L  F  Q  S  T  R  E  D  S  P  V  C  E  G  V  E  I  R  V  A  N  F  G  L  T  G  S  G  Y  S  K  I  L  P  R  S  G  R  L   : R  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  F  *  N  S  D  V  S  Q  T  W  D  R  S  V  S  L  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  R  H  Y  P  C  T  F  D  *  V  S  F  G  G  P  *  V  S  R  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  F  L  Y  *  P  *  T  G  Y  S  P  H  F  Y  T  P  L  Q  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  D  F  V  C  E  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  R  F  H  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  S  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  H  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  H  V  P  S  I  E  S  V  S  V  V  H  K  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  I  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  M  L  T  R  L  G  F  T  H  Y  P  D  M  P  R  N  F  V  S  V  H  K  R  G  F  A  G  L  *  R  G  *  D  Q  S  C  E  F  R  P  Y  R  *  R  L  Q  Q  N  P  S  K  K  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  I  L  K  Q  *  R  *  P  N  L  G  Q  I  R  *  F  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  M  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  T  T  L  P  M  Y  L  R  L  S  Q  F  R  W  S  I  S  F  *  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  I  S  V  L  T  L  N  R  V  L  A  P  F  L  Y  P  L  T  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101851" stop="101666"/>
                    <exon start="99572" stop="99060"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEARFHALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEVVDFDVILGMTWLSPQFAILDCNSKTVTLAKPGTDPLVWEGDYTSNPVRIISFLHAKKMVSKGCLAFLAHLKDDTTHVPSIESVSVVHKFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPILFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="102843" PGL_stop="102552"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102843" e_stop="102552"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="102843" e_stop="102552" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102843" stop="102552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGACTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCAGCAGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  P  A  G  Q  G  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  D  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  H  Q  Q  D  R  V  R  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  T  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  S  T  S  R  T  G  C  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102794" stop="102552"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRDYKTLGKFHSFFLSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQHQQDRVRLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="103487" PGL_stop="103252"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103487" e_stop="103252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="103487" e_stop="103252" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103487" stop="103252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATGAACCTAATTCCCAAATGAGTATGTTGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTATCTGATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTG</gDNA_template>
            <first_frame> *  *  T  *  F  P  N  E  Y  V  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  S  D  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L   </first_frame>
            <second_frame>  N  E  P  N  S  Q  M  S  M  L  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  Y  L  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  </second_frame>
            <third_frame>   M  N  L  I  P  K  *  V  C  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  I  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0020F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="104705" PGL_stop="104048"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104705" e_stop="104048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="104705" e_stop="104048" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104705" stop="104048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAACTGGCAGAAGCGACAGACCCCACGACGGACTGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGCGACGACCTGCAGGACGGACCGTTGCAGGCACGACGGGCCGTCACAGACTGTGAAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGAGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGTCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAACAGAAAGAACAAGAGAAAGAGAGAGAAATTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAAAACACAAAGCTTAGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATT</gDNA_template>
            <first_frame> E  K  L  A  E  A  T  D  P  T  T  D  C  H  G  H  D  G  P  S  Q  G  L  V  S  K  H  L  E  N  L  K  L  G  T  E  N  R  L  S  E  L  R  N  G  M  A  G  R  T  V  T  G  V  T  D  R  H  R  L  F  S  G  N  *  V  S  D  P  C  D  D  L  Q  D  G  P  L  Q  A  R  R  A  V  T  D  C  E  I  P  V  W  V  G  F  L  Y  T  F  *  G  T  F  W  T  I  P  T  L  I  I  K  L  E  G  *  C  *  *  V  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  V  I  I  V  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  V  *  I  K  K  T  E  R  T  R  E  R  E  R  N  S  N  E  K  E  D  R  T  R  G  K  K  T  Q  S  L  G  N  H  L  L  D  H  E  S  S  V  E  V  G  Y  G  F  H  A  I  R  S  K  L  L  I  A  N  D  M  C  *  *  Y  </first_frame>
            <second_frame>  K  N  W  Q  K  R  Q  T  P  R  R  T  V  M  G  T  T  D  R  R  R  V  S  F  Q  N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  R  T  V  T  D  Y  S  V  E  I  E  S  L  T  L  A  T  T  C  R  T  D  R  C  R  H  D  G  P  S  Q  T  V  K  S  Q  S  G  S  D  F  F  T  R  F  K  G  R  F  G  L  F  L  L  *  L  *  S  *  R  V  N  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  K  L  I  S  G  L  L  L  S  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G  F  E  *  R  K  Q  K  E  Q  E  K  E  R  E  I  R  T  R  K  R  I  E  R  E  E  K  K  H  K  A  *  E  I  T  C  L  I  T  N  L  R  W  R  *  V  M  V  F  M  L  F  V  V  N  S  *  *  R  M  I  C  V  S  S  I </second_frame>
            <third_frame>   K  T  G  R  S  D  R  P  H  D  G  L  S  W  A  R  R  T  V  A  G  S  R  F  K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  Q  I  I  Q  W  K  L  S  L  *  P  L  R  R  P  A  G  R  T  V  A  G  T  T  G  R  H  R  L  *  N  P  S  L  G  R  I  S  L  H  V  L  R  D  V  L  D  Y  S  Y  F  N  Y  K  V  R  G  L  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  E  G  L  N  K  E  N  R  K  N  K  R  K  R  E  K  F  E  R  E  R  G  S  N  E  R  K  K  N  T  K  L  R  K  S  L  A  *  S  R  I  F  G  G  G  R  L  W  F  S  C  Y  S  *  *  T  L  N  S  E  *  Y  V  L  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104705" stop="104511"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKLAEATDPTTDCHGHDGPSQGLVSKHLENLKLGTENRLSELRNGMAGRTVTGVTDRHRLFSGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="104195" PGL_stop="104740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104195" e_stop="104740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="104195" e_stop="104740" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104195" stop="104740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104195" stop="104667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAATTTCTCTCTCTTTCTCTTGTTCTTTCTGTTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGACAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTTCACAGTCTGTGACGGCCCGTCGTGCCTGCAACGGTCCGTCCTGCAGGTCGTCGCAAGGGTCAGAGACTCAATTTCCACTGAATAATCTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATGACAGTCCGTCGTGGGGTCTGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGCTACTCAAAACGACTAAACA</gDNA_template>
            <first_frame> S  N  F  S  L  F  L  L  F  F  L  F  S  L  F  K  P  S  F  F  Y  P  N  *  Y  I  I  K  N  K  R  *  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  *  E  *  S  K  T  S  L  K  T  C  K  E  I  R  P  R  L  G  F  H  S  L  *  R  P  V  V  P  A  T  V  R  P  A  G  R  R  K  G  Q  R  L  N  F  H  *  I  I  C  D  G  P  S  R  L  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  D  F  Q  Y  P  I  S  D  F  L  S  V  L  K  R  D  P  A  T  V  R  R  A  H  D  S  P  S  W  G  L  S  L  L  P  V  F  P  E  L  K  S  A  T  Q  N  D  *  T </first_frame>
            <second_frame>  R  I  S  L  S  F  S  C  S  F  C  F  L  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  D  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  L  *  L  Y  N  *  S  R  N  S  P  K  R  P  L  K  R  V  K  K  S  D  P  D  W  D  F  T  V  C  D  G  P  S  C  L  Q  R  S  V  L  Q  V  V  A  R  V  R  D  S  I  S  T  E  *  S  V  T  V  R  H  A  C  D  G  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  I  F  *  V  F  *  N  E  T  L  R  R  S  V  V  P  M  T  V  R  R  G  V  C  R  F  C  Q  F  F  Q  N  *  S  L  L  L  K  T  T  K   </second_frame>
            <third_frame>   E  F  L  S  L  S  L  V  L  S  V  F  F  I  Q  T  L  F  L  L  P  *  L  V  Y  N  *  E  *  K  M  T  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  *  P  S  N  F  I  I  K  V  G  I  V  Q  N  V  P  *  N  V  *  R  N  P  T  Q  T  G  I  S  Q  S  V  T  A  R  R  A  C  N  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  L  N  N  L  *  R  S  V  T  P  V  T  V  R  P  A  I  P  L  R  S  S  E  S  R  F  S  V  P  N  F  R  F  S  K  C  F  E  T  R  P  C  D  G  P  S  C  P  *  Q  S  V  V  G  S  V  A  S  A  S  F  S  R  I  E  V  C  Y  S  K  R  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0020F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 256 chains have been computed
$ 
$ memory statistics:
$ 345256 bytes spliced alignments in total
$ 89 spliced alignments have been stored
$ 3879 bytes was the average size of a spliced alignment
$ 30488 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1451 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 328 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 17:57:37
-->
