<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 18:02:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323323" ref_strand="+" ref_description="SGN-U323323        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: AT3G58710.1 | Symbol: None | WRKY family transcription factor, contains Pfam profile: PF03106#WRKY DNA -binding domain | chr3:21725984-21728129 FORWARD | Aliases: T20N10.60 (evalue: 3e-50, score=196) genbank/nr: gi|74096728|gb|AAZ99027.1| WRKY-A1244 [Capsicum annuum] (evalue: 4e-49, score=198)">
      <seq>ctttttattttctctcattttttcttctaatttctatatgatataaaacaaaatttagttaatcctcaaaaagtttttattttctttcttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaagcggcggaagttagcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtcttggagaaaatatggacaaaaaccaattaaaggatcaccttatcccaggggatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgcttctcattacctattgctccgaacacaatcaccaaatcccggccgccgccgccgccaaacaccaccatcacaaccaccctactaccaccaccagttcacccactacctctaccggcaccgccggagacaataatgctactgcggctgtagccacggactctaccgtagtagacaaatcatcccccgaagaaccagatctatttgcttatcaacacgataatggattttcagagctcgccggtgagttaggttggttttccgatatgggaacaacaactacgtttatggagagtacgtcgtcgtccatggcgggatccacgtggaacgacagtgacgtggcgttaatgttgccgattcgagaagaggatcagtcgttgtacggtgatctcggtgaattaccggaatgttcagttgttttccggcggtacagtgtggaaactccctgctgcggaggtacaggataacaaatcatttgtcaatttttcactgaaattgccatatttttattttttaattatcttcctgacttttggttccacgttcttcgtgacccttttttttaattttatttttatgtaaagatctggtagattaaaaaaaaaaagaaatatactttgatttgatttttacttgaaaaacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="1755" stop="69321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2055" g_stop="2324" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2325" i_stop="2538" i_length="214">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2539" g_stop="2685" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="417" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2686" i_stop="5113" i_length="2428">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5114" g_stop="5828" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="1132" r_length="715" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5829" i_stop="6096" i_length="268">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6097" g_stop="6120" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1133" r_stop="1156" r_length="24" r_score="0.708"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-U323323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1156</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2055" e_stop="2324"/>
          <exon e_start="2539" e_stop="2685"/>
          <exon e_start="5114" e_stop="5828"/>
          <exon e_start="6097" e_stop="6120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGATCCACGTGGAACGACAGTGACGTGGCGTTAATGTTGCCGATTCGAGAAGAGGATCAGTCGTTGTACGGTGATCTCGGTGAATTACCGGAATGTTCAGTTGTTTTCCGGCGGTACAGTGTGGAAACTCCCTGCTGCGGAGGTACAGGATAACAAATCATTTGTCAATTTTTCACTGAAATTGCCATATTTTTATTTTTTAATTATCTTCCTGACTTTTGGTTCCACGTTCTTCGTGACCCTTTTTTTTAATTTTATTTTTATGTAAAGATCTGGTAGATTAAAAAAAAAAAGAAATATACTTTGATTTGATTTTTACTTGAAGCCATTGAGCTGCTTTTGTAATTTTTACAATAAAAATATAGTCTAAATTTGAAGATTATAAATTTAAAATTTTCGTTATTTTAGTCAAAATTATCAAATCATAATAAAAAAAGCTAAGATCACTCTCTAATCTCTATTCACATTTTGGAGGCCTACTTATTGCTTTACAAAGATATTTGGTGCCTGGCGGCTTATTTGGTTCCCTTTTTTTTGACTTATTGGACTATTTTCATTTTTTTCTGTTTGATAAAAACAAATACTTTTTTTAAAAAAAAAAAAAAACTATATTCAA</genome_strand>
        <mrna_strand>CTTTTTATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGATCCACGTGGAACGACAGTGACGTGGCGTTAATGTTGCCGATTCGAGAAGAGGATCAGTCGTTGTACGGTGATCTCGGTGAATTACCGGAATGTTCAGTTGTTTTCCGGCGGTACAGTGTGGAAACTCCCTGCTGCGGAGGTACAGGATAACAAATCATTTGTCAATTTTTCACTGAAATTGCCATATTTTTATTTTTTAATTATCTTCCTGACTTTTGGTTCCACGTTCTTCGTGACCCTTTTTTTTAATTTTATTTTTATGTAAAGATCTGGTAGATTAAAAAAAAAAAGAAATATACTTTGATTTGATTTTTACTTGAA............................................................................................................................................................................................................................................................................AAACAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319627" ref_strand="+" ref_description="SGN-U319627        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: AT1G06400.1 | Symbol: None | Ras-related GTP-binding protein (ARA-2), identical to Ras-related protein ARA-2 SP:P28185 from (Arabidopsis thaliana) | chr1:1950843-1952726 REVERSE | Aliases: T2D23.10, T2D23_10 (evalue: 2e-98, score=355) genbank/nr: gi|6688535|emb|CAB65172.1| Rab11 GTPase [Lycopersicon esculentum](evalue: 4e-119, score=431)">
      <seq>tatttttttcttcttcaaaattgaatcttttcagtgaacttttactatttggtcaatcaagaagtgaaattacagagcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattagaagcgaccaacgttgaaaatgcgtttactgaagctctcacgcagatataccggatcgtcagtaagaaagcagtcgaggcaggggacgaaggtgctacttcaaccgcaccacctaaaggacagacgattaatatcaaagatgaaggatctgcttggaaaaagtttgggtgctgttcgagctagggctcacgtaagacaatagctcaagctttatatatcagttgtaaattgtcattaaatcaatgatttcctctccctgttttctctcactttgggtatcgcgattgtgggatataagatttattctatagtcatgagaatacgtgaagcagcgcgttctcatgaaaaattccgaaggaggatcaggtactgctagtttctaattacagaatgtctaaacaaggtcttagttttatgttttctggttgatggcttgaaaaactggagatatctttgcaataacctgttaccgaatatcttcttatttgtctcgaatttacgtcttaattatttttccccttctaaaagtgtatttcctgagctgagtagcaatgtttgttgttcatgatatgtgtagtttgataaattaaagtagaacatggcaaggtgtgcccagagttgatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="12243" stop="6269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11943" g_stop="11623" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11622" i_stop="7449" i_length="4174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7448" g_stop="6561" g_length="888"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="1209" r_length="888" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-U319627" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1209</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11943" e_stop="11623"/>
          <exon e_start="7448" e_stop="6561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAAGTGTATTTCCTGAGCTGAGTAGCAATGTTTGTTGTTCATGATATGTGTAGTTTGATAAATTAAAGTAGAACATGGCAAGGTGTGCCCAGAGTTGATTTAAGTGGATGA</genome_strand>
        <mrna_strand>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAAGTGTATTTCCTGAGCTGAGTAGCAATGTTTGTTGTTCATGATATGTGTAGTTTGATAAATTAAAGTAGAACATGGCAAGGTGTGCCCAGAGTTGATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331368" ref_strand="+" ref_description="SGN-U331368        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gtgatgattataagacatataaaacatgttaataaaaaggagtagagaagtatatgcgaaaattcaaactacaaacttagttccaaactaaactgtcattttgaaatatagatgttttacatggattcttcattaatcattatcatcaatatacgtgtttgagtgattgtgatgtgggcatggttacttcatgtagatacactcaaaattagcgaaaagtctataagtacacatactagatacgtatgcacatcataggaataataaatctttggattagttaggcataaactaaaccaagatgcccccaaggcctagctcgagtggcaaaaggtggaggatttgtgacttaggtcgcaggttcaagcccacaccatgcaaagcgaagcctggtatttaagtggggaagggtagaggggtggacccattatccaccgagtttagaaggttgtgattggtccaaagggcagtgggtcacggataaataaataattggaagtcatatttgtatgtgatacaacttaaagtactgacaaaaagaattgagatacaacttaaggtaacattcgaacttctgtaggattttttagtaaaggtggttttcaggccattttgagccacctgttacgttctaaatcaccagtatagttatccggtaactgtctatcaaagcttagacaaatgggaagatgtcaccctacattttttgcctatgctaggacttgatcccagaaatcccatggttttaatctatttcattgacactaccctggctttttataacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="9904" stop="8516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9604" g_stop="8816" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-U331368" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9604" e_stop="8816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCT</genome_strand>
        <mrna_strand>GTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAAT-CACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344053" ref_strand="+" ref_description="SGN-U344053        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gggaactagtctcgagttttttttttttttttttgtgtgtttgggatttagatgagtgagaagtgcttgtgggtttgttggtttaatcttatttttggtaaggttcttcaaatgatgttgtgtttattggtattttctaagagtgtctagatgtgctgttgttgcttgattgggatttcttgtctttgggtgtggtatctgtgttcctaattgaaattcgagggacatggagtgcttactgcaaccaattatatataaaaaaaaaagaagaatatttttccgtgtttggttcatgaaaaagaatatcgtgagagcattttgaagacgtaatgaagtaaatcaaagtgtgttgccccaatggacttttagatgagatgatcatacaattcaacatttgtgcaggctatgtgtgctcctagttgtttagatgctattgtgatgtcaatctgaaagctaattatagaaattgtagtatccaaatttgttgttttaaaattatttgaacttattcagttcccgcacgagtacattggcaggtatgttttttctaatatgaaaaataattgaccaaagtaactcaatatttcctcataatttttgaaatccttagctattttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="69323" stop="10002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11270" g_stop="11255" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11254" i_stop="10908" i_length="347">
            <donor d_prob="0.879" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10907" g_stop="10302" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="621" r_length="606" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-U344053" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11270" e_stop="11255"/>
          <exon e_start="10907" e_stop="10302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTG</genome_strand>
        <mrna_strand>GGGAAC-TAGTCTCGA...........................................................................................................................................................................................................................................................................................................................................................GTTTTTTTTTTTTTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333424" ref_strand="+" ref_description="SGN-U333424        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycosyl transferase family 20 protein / trehalose-phosphatase family protein, contains Pfam profile: PF02358 trehalose-phosphatase | chr1:1955412-1958755 FORWARD | Aliases: T2D23.11, T2D23_11(evalue: 1e-37, score=152) genbank/nr: gi|19568935|gb|AAL91978.1| putative trehalose synthase [Solanum tuberosum](evalue: 6e-53, score=209)">
      <seq>gaaaagcggtcagcacattgtggaagtaaagcctcagggggtcaccaaaggtttagttgcagaaaaagtctttacatctttagcggagaaaggaaaactggcggattttgtgctttgcattggtgatgatagatcagatgaagatatgtttgaaatcattggcgatgctttgtccagaaatattatttcatatgatgccaaggtatttgcttgcacagttggacaaaaacctagcaaagcaaagtattacttggatgacacatctgaggtggtgcttatgctagactcccttgctgatgccactgatactccagtgacttctgatgacgatgaacctgcggactccgactgaatgtagctaccagatgttttgtttgcttcggttaccttctctattgaatgtatattccaggtctgaagatggcacattgtccatttgagttcggtttcgaggtttaagacggtggaatctcaaattctgttcaatcattctttcctttctgattgttctattcttttatcattagcctgtatgtaatatatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="20619" stop="23949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20919" g_stop="20955" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20956" i_stop="23138" i_length="2183">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23139" g_stop="23649" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="548" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-U333424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20919" e_stop="20955"/>
          <exon e_start="23139" e_stop="23649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCGGTCAGCACATTGTGGAAGTAAAGCCTCAGGCACGTATTACTTATCCCAACTTCCATATGAGTTCATTCATATTTGTTGCTTGTATTCCAAGATTTACACTTCAGAAATGTTACCTAGCGTCCTTAGTAAATGACCCCTTCTCTTATTGATGAGTCTCCTCTCCCAAAAAACAGTGTTTGGTTTCCACTCCCTTGTAATCTGGATAAAACTCTTTTATTAGCTATCGGTGTTTAGATGAGATATATGATCATGTTTACCGTAGAACCTTATACATCCTTTATTTCCTGTATATGACAATGTGCTGATCTCCACCTTAAGGGTGTGTTTGGTTAGGAGGTTTCCAGCTTTTTCCATGTTTGGTTGGTCATGATATTTTGGAAAGCATTTTCTCTGGTGAACAAGTTCATTGTCTCCTGCCCACCCACCTAGCTGCTAACCCCCATCCTTGACAATCTCACTCCTCGTCCCTGCCACTTCACCTTCCCACCCCATCCCACCCTCAAAGTGTTTTGCTTGATTACATATAAATGTTCTTGTGATCATATGTTTTGTTTACTTACCTAACACTAGAAAATAAGTAAGAAAATGTTTTCCTAATACCAAACACGCCCTAAATATGGCATTTGCTTTATGGGTCACTTGTTGGTTATATTGCTTATAAGGATGGTGTATATTCTTTTTTCGTAAGTGTGGAGGGTAATGCTTTCAAGCTTGCATCAATCTCCATTAGCTATCCCTTTATGTAATTCAGTATTATCATCCTCCATATTAAATGCATAGTTTATGTTTAGTCCAACAACATACCCAGTGTAATCCCACAAGGTGGAGTATTGGGAGGGTAGAGCGTACCGTAGCTTGTGCAGGTAGAGTGGTTGTTTCCGGTAGACCGTAACAACAACATGATAATAAGAAGCACAAGACTTGTACTGATGCTAATGCTACTCGTAAGGAAAAACAGAATGCGAACAATCTCAATAATACTAATACTAATACTAATGCTACTCAAAGGAAAAACAGAATGCAAGGCTACCTACTATAGTCTTATACCCTAATTCTCGACCTCTACACCCTCCTATCTAGGGTCATGTCCATGACCCTTGGTGTAAGCTGAAGACTTGCCATGTCCTGCCTAAACTCCTCTCCCCAATACTTCTTTGGCCTACCTTACTCTACCTCTCCTCTAGTCGTAACATCAGCCTCTCATACATCCTCACTAGTGTGTCTTGTGGAACTCCTCTTGACATACTCTTAGCCATTTCAGCCTTGCCTCCCGCATCTTGTCCGACATGGAGGCCACTCCCACTTTTTTCCAAATATCTTCATTTTGACCATATCTCTCTTAAGTAAGCCCACCCACCCATCCATCTCAACATCCTCATCTCTACAATTTTCATCTTCTGCACATGGGAGTCTTGACTAGCAACAACACTCCGCCCCATACAACAATGTTTTAAGTTACTTTCAACTTTTGGTGTCACCTTATCACAAAACACACCAGATGCTAGCCGTTTATTTCAACTACCACCTATAATGCTATCTGCGACATTCTCATCAATCTCCCCATTATCTTGGATAATAGCCCCAACTCCCAAGGTACTTGAAACTCCCTCTCGTGGAGATGGCTTGAGAATCCAACCTCGTTTCCACATTACCTTTGCGTGTCACAACACTGAATTTGCACTCCACGTACTTTGCCTTATTTCTACTCAATCCAAAACCTTTAGACTCCATGATCTGTCTCCAGACCTCTAGCCTGTCGTTAACTCCCCGTCTTGTCAACAAGTACTATGTCATCTCCAAATAACATGCACCAAAGCACCTCCCTTTGTATGTGCTACGTCAATACATCCATCGTCAAAGAAAATAAAACGTTATTTTTTAATTGATGTGCCATTAATCCATGCGTAGGTTATTTGCGAGCTAAAGAGCCTTTAGTATTTACTCAAGTAATTGGTTGAGAGCTGCAATTTCTTTGCTAGTGACAAGTGACTACCTGGCATATATTTCCTCTCTAGATAAAGATGATGTTAACGTAATAATTTTAACAACAATAGTAGTGTATTCTTTTTCACTGTTCTGATTGCTATTGTCAAATTCTTGAGTATCTTGAATATATCGTTTTCGTTTAATGCTTTTTGACGTGTATTTTAGTGTTGATTGCAGTCAACATCCTAGTATGTGTTCCGAATGACATTAATTTTCTCTTTTTCAGGGGGTCACCAAAGGTTTAGTTGCAGAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTG</genome_strand>
        <mrna_strand>GAAAAGCGGTCAGCACATTGTGGAAGTAAAGCCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTCACCAAAGGTTTAGTTGCAGAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313929" ref_strand="+" ref_description="SGN-U313929        Tomato 200607 #1 [59 ESTs aligned] arabidopsis/peptide: AT2G30950.1 | Symbol: None | FtsH protease (VAR2), identical to zinc dependent protease VAR2 GI:7650138 from (Arabidopsis thaliana) | chr2:13181402-13184300 FORWARD | Aliases: F7F1.16, F7F1_16 (evalue: 0, score=996) genbank/nr: gi|4325041|gb|AAD17230.1| FtsH-like protein Pftf precursor [Nicotiana tabacum](evalue: 0, score=1119)">
      <seq>gaggagttatctttcctctgtcaactttatcaggttcttgcttcttttctgagcgtatcaacatggcgacttcatcagtatgcatagcaggaaatgatttgtccacccatagaacacagaaagtttttaggaaggagatctatggcagaaaaattttgtactcctcaaatcttccatcatctaggaaaacatcaagagtagttgtaaaagcatcccttcagcaagggccacatgaaggaagaagaggctttcttaaattattgcttggaaatgttgggcttggagtgcctgctttgttaggtaatgggaaagcctatgctgatgagcaaggtgtttctaactcaaggatgtcttattctagatttttggagtatctggacaaggacagggtgcaaaaagtagatctgtttgaaaatggaaccatagctattgtagaagctgtatctccagaattggggaaccgagtgcaaagagttagggtacaactacctggactcagccaggaactccttcaaaagttccgggaaaagaacattgatttcgctgctcacaatgctcaagaggactcaggttctctcatattcaacttgattggaaatctggctttcccacttattttgattggtggtcttttcctgctatcaaggcggtctaacggaggaatgggaggtcctggtgggcctggaaacccactagcatttggtcaatcaaaggctaagttccaaatggagccaaacactggtgtgacatttgatgatgttgctggtgtagatgaagcaaaacaagattttatggaggtcgtagaatttttgaagaaacctgagagatttactgcagtaggggctcgtattccaaaaggtgttcttcttgttggtcctcctggtactgggaaaaccttgctagcaaaggcaattgctggtgaagcgggtgttccatttttctcaatttcaggttcagaattcgttgagatgtttgttggtgttggagcctctcgagtccgtgatcttttcaagaaggccaaggaaaatgctccttgcattgtatttgttgatgaaattgatgctgttgggcggcaaagagggactggaattggaggaggaaatgatgaaagggaacagaccctgaaccaactattgactgaaatggatggtttcgaaggaaatactggtataatagttgttgcggcaaccaatcgtgcagatattcttgactctgctttgctgaggccaggacgatttgatagacaagtatccgtggatgtcccagacatcaagggaagaacagagatcttaaaggttcatgccggcaacaagaagtttgattcagatgtgtctcttgaagttattgccatgaggacaccgggtttcagtggagcagatcttgctaacctcttaaatgaagcagccattcttgcaggtcgacgtggtaagacagcaatcgcatccaaagagattgatgattcaattgataggatagtggctggtatggaaggaacagtcatgactgatggcaagagcaagagtctggtggcatatcacgaagttggacatgccatctgtggaactctcactccagggcatgatgctgtacaaaaggtcactctaatcccacgtggtcaggcaaaaggtttgacctggttcattcctgcagatgacccaaccttaatatccaagcaacaactctttgctagaattgttggtggacttggtggaagagctgcagaagaagtgatctttggtgaacctgaagtgaccactggtgctgctggtgatttgcagcagatcactggtttggcaaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="31281" stop="26637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30983" g_stop="30951" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30950" i_stop="29864" i_length="1087">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.540" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29863" g_stop="28650" g_length="1214"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="1247" r_length="1214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28649" i_stop="28576" i_length="74">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28575" g_stop="28262" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1248" r_stop="1561" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28261" i_stop="28084" i_length="178">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28083" g_stop="27843" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1562" r_stop="1802" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27842" i_stop="27450" i_length="393">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27449" g_stop="26938" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1803" r_stop="2314" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2315" polyA_stop="2330"/>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-U313929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2314</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30983" e_stop="30951"/>
          <exon e_start="29863" e_stop="28650"/>
          <exon e_start="28575" e_stop="28262"/>
          <exon e_start="28083" e_stop="27843"/>
          <exon e_start="27449" e_stop="26938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGAGTTATCTTTCCTCTGTCAACTTTATCAGGTACTTTCTCTTAACTCTTCTACTACTAACAGACTTGTATTTGAATGGTTTAGCTCTTAATTTGAAGTTACTAGCTGTACTTTTATGTTTGGCTCACAAGGTGTTTGTTATAATGCCTCAATGAATGATCCTTTACCTGTAGGCTGTAGTTGGCGTATGAAAAAGATATACCCACATCGAGATTTGGTTTAGTTTGCTCTTTTACCCTCCAACCCAACCCCCCAACACGCAAAAATTTGACTTGTTGGCGCGAATCTGGATTGGTCGGGGTTGAAGTGGGTACCGGATAGTGGGTGGGAAACCAAAAAGAACAGAGATTTGGCTTAGTTTCTTGAATTGGGGAAAAGGGGATTTTTTTTACTTTAAGGTTGGTTTTTTATTTGAATTTTTGACATAACAAAGCTTGTGTTTACTTGTCTCACTTTGATATCTTGGGTAATGATGAGGGAAGCGATACCCAGGTGCCAAGCTAACATTTTTCTAGTGCAAATGTTGTAATTGGAAATAACTGAAGGTTTAAAATGAGTAATTTTTACGTTAGGATGGGTCTCCTTCACTCTCTTGCAAATGGCACAATTTGAAATTGAAAGAAGCATTCGGAATCATGTCTCTTTTTAATTAGTCTATATACATGGTAAACCAATAGAGTACAGATGTGTGTAAATATCGTTACGTATGCTGGCAGTTCCTTATTAGTTTTTCGTGTATGAATAACCCATACGTATATCAGATCTGTTTGATACAGGTATTCTAAAAGTAAATCATCCATGTAGTATAGGTTAACTTCAAAAATCAATTGTGAAGCATTTACATGCCATCAATAAAGGGAAACTAAGAGTTCTTTTTGATAGATGAAATAAGCTTAAAATGGGTTGCGGAATTGTCATCATTGAGATCAGTGCTACTTGAGATGAAGAATACAAAAGGGAAAAAGTTGTCATCCCAGTATTTTCCCAATAAATTTAAAAGTGATTCAAATGGGCACGATGCCAGTCCTTTGCCTGATTGATTTATTTCCTTGCAACTTGCAGTTATCAACTTTATCATTTCTCCTTTGCAGAATTATCATTAGAAGTGAACTGTGCAGGTTCTTGCTTCTTTTCTGAGCGTATCAACATGGCGACTTCATCAGTATGCATAGCAGGAAATGATTTGTCCACCCATAGAACACAGAAAGTTTTTAGGAAGGAGATCTATGGCAGAAAAATTTTGTACTCCTCAAATCTTCCATCATCTAGGAAAACATCAAGAGTAGTTGTAAAAGCATCCCTTCAGCAAGGGCCACATGAAGGAAGAAGAGGCTTTCTTAAATTATTGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAGGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAAGTAAGCATCTGTCCTTGCCTCCGTTATTTAACTGTGACTTTTGCAAGAAACTAAAATTTACCGCTCTTATGTAGGTATCCGTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTCAATTGATAGGATAGTGGCTGGTATGGAAGGAACAGTCATGACTGATGGCAAGAGCAAGAGTCTGGTGGCATATCACGAAGTTGGACATGCCATCTGTGGGTGAGTGCTGCACCATTAGCTAGTTACTCCTGGCTCCTGATTTGCATCTATTATATAAGCATTTTTTATAACAATATTATGAGTTTATTATTGTGTTGGCATTTTAATTACCCAACAGTGATTTCAACAGAATATCCTGGTGAGCCTCTAATGGCACTATGTGTTCTTTGCCATGCAGAACTCTCACTCCAGGGCATGATGCTGTACAAAAGGTCACTCTAATCCCACGTGGTCAGGCAAAAGGTTTGACCTGGTTCATTCCTGCAGATGACCCAACCTTAATATCCAAGCAACAACTCTTTGCTAGAATTGTTGGTGGACTTGGTGGAAGAGCTGCAGAAGAAGTGATCTTTGGTGAACCTGAAGTGACCACTGGTGCTGCTGGTGATTTGCAGCAGATCACTGGTTTGGCAAAACAGGTATATATGCTCACTGCCTTTTTTGTGTTAAGGATTCTGGAACGGAATATATGTTGAGGTAATCTGTGGAGACTAGAAATTCTACAGAGTGATTGGTTTTGAATTAACCTCTACTTCCCGTTTCCTTCAAAAGATTATAGAGATAAGAGCAATACAATTATTCCCTCTGTTTCAATTTATGTGGTTTTGTTTGAAAAGATTTTTGGGTTTGTGATCTTAAACATGCCATGAAACTTCTGTGGCTATAAAGTTAAAATTGTTTTCAAATATAGAAACGTTAACATTCATTTTGGATAAGACTAACAACAGCATAGTGTCACATTATTGGAAAGGAGCGAGTAGTTTTATCTTCTTTTTGACTTAGTTCTGTAAAATGACAAACTGTTCATGCAGATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTA</genome_strand>
        <mrna_strand>GAGGAGTTATCTTTCCTCTGTCAACTTTATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTCTTTTCTGAGCGTATCAACATGGCGACTTCATCAGTATGCATAGCAGGAAATGATTTGTCCACCCATAGAACACAGAAAGTTTTTAGGAAGGAGATCTATGGCAGAAAAATTTTGTACTCCTCAAATCTTCCATCATCTAGGAAAACATCAAGAGTAGTTGTAAAAGCATCCCTTCAGCAAGGGCCACATGAAGGAAGAAGAGGCTTTCTTAAATTATTGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAGGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAA..........................................................................GTATCCGTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTCAATTGATAGGATAGTGGCTGGTATGGAAGGAACAGTCATGACTGATGGCAAGAGCAAGAGTCTGGTGGCATATCACGAAGTTGGACATGCCATCTGTGG..................................................................................................................................................................................AACTCTCACTCCAGGGCATGATGCTGTACAAAAGGTCACTCTAATCCCACGTGGTCAGGCAAAAGGTTTGACCTGGTTCATTCCTGCAGATGACCCAACCTTAATATCCAAGCAACAACTCTTTGCTAGAATTGTTGGTGGACTTGGTGGAAGAGCTGCAGAAGAAGTGATCTTTGGTGAACCTGAAGTGACCACTGGTGCTGCTGGTGATTTGCAGCAGATCACTGGTTTGGCAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334675" ref_strand="+" ref_description="SGN-U334675        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G06430.1 | Symbol: FTSH8 | encodes a FtsH protease that is localized to the chloroplast | chr1:1960057-1963006 REVERSE | Aliases: F12K11.22, FTSH8 (evalue: 3e-99, score=358) genbank/nr: gi|4325041|gb|AAD17230.1| FtsH-like protein Pftf precursor [Nicotiana tabacum](evalue: 4e-100, score=367)">
      <seq>ccatctgtttgaaaatggaaccatagctattgtagaagctgtatctccagaattggggaaccgagtgcaaagagttagggtacaactacctggactcagccaggaactccttcaaaagttccgggaaaagaacattgatttcgctgctcacaatgctcaagaggactcaggttctctcatattcaacttgattggaaatctggctttcccacttattttgattggtggtcttttcctgctatcaaggcggtctaacggaggaatgggaggtcctggtgggcctggaaacccactagcatttggtcaatcaaaggctaagttccaaatggagcctctcgagtccgtgatcttttcaagaaggccaaggaaaatgctccttgcattgtatttgttgatgaaattgatgctgttgggcggcaaagagggactggaattggaggaggaaatgatgaaagggaacagaccctgaaccaactattgactgaaatggatggtttcgaaggaaatactggtataatagttgttgcggcaaccaatcgtgcagatattcttgactctgctttgctgaggccaggacgatttgatagacaagtatccgtggatgtcccagacatcaagggaagaacagagatcttaaaggttcatgccggcaacaagaagtttgattcagatgtgtctcttgaagttattgccatgaggacaccgggtttcagtggagcagatcttgctaacctcttaaatgaagcagccattcttgcaggtcgacgtggtaagacagcaatcgcatccaaagagattgatgattcaattgataggatagtggctggtatggaaggaacagtcatgactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="29794" stop="28014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29496" g_stop="29166" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29165" i_stop="28910" i_length="256">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28909" g_stop="28650" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="591" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28649" i_stop="28576" i_length="74">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28575" g_stop="28314" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="853" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-U334675" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29496" e_stop="29166"/>
          <exon e_start="28909" e_stop="28650"/>
          <exon e_start="28575" e_stop="28314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAGGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAAGTAAGCATCTGTCCTTGCCTCCGTTATTTAACTGTGACTTTTGCAAGAAACTAAAATTTACCGCTCTTATGTAGGTATCCGTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTCAATTGATAGGATAGTGGCTGGTATGGAAGGAACAGTCATGACTGATG</genome_strand>
        <mrna_strand>CCATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAG................................................................................................................................................................................................................................................................CCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAA..........................................................................GTATCCGTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTCAATTGATAGGATAGTGGCTGGTATGGAAGGAACAGTCATGACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346968" ref_strand="+" ref_description="SGN-U346968        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr3:21727897-21728869 REVERSE | Aliases: T20N10.70(evalue: 9e-27, score=117) genbank/nr: gi|15231124|ref|NP_191431.1| zinc finger (C3HC4-type RING finger) protein family [Arabidopsis thaliana] gi|11358161|pir||T49155 hypothetical protein T20N10.70 - Arabidopsis thaliana gi|7630067|emb|CAB88289.1| putative protein [Arabidopsis thaliana](evalue: 7e-25, score=117)">
      <seq>aacacagaaaaatttacaaacatgaacagcaacaggcctcataattttacacaacatggaaattggagcaatggagagtggcatgatcctaattcacatggacctgagtacatatggcaacctattatccctcgtcctccgcctccacgagatatccctcagaatcctagacgtgtcgttcatgatccaccgttgcaagtaacagagagaccatttctagtacctactggtgcaacaagttatccatatccaggccaaccacgacgtaggctaactcatcctcctgttcgcgttctactccataacgatgatgtaccaagacatggatcatatcagagaccaagccaacttccattcgattctcctcctcctccgtggtttatgcagagcaatgaaacgtcgaggaatgaatcaaaattgagcccaaatgagcaaaaggcagccttaaataaactcaagaaagaaatctacaatcctgtacaagcaaaagtggcaaaacaagtgaacctttactttagaggcttgaacaatactaccaccaacgaatcgatcaaggacaaagatgaggatggtaaaagatgttcgatttgcttggaagatttcgagcctaaagagattgtgacagtcacaccatgtagtcatatgttccacgaagactgcatcgttccatgggtgacaaatcatggctcgtgccctgtctgtcgatttgctatctgtngaaagatgaaacaggacacaacagactcatcgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="33893" stop="32374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33593" g_stop="33432" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33431" i_stop="33341" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33340" g_stop="33264" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="239" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33263" i_stop="33188" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33187" g_stop="32674" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="753" r_length="514" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-U346968" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33593" e_stop="33432"/>
          <exon e_start="33340" e_stop="33264"/>
          <exon e_start="33187" e_stop="32674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAGAAAAATTTACAAACATGAACAGCAACAGGCCTCATAATTTTACACAACATGGAAATTGGAGCAATGGAGAGTGGCATGATCCTAATTCACATGGACCTGAGTACATATGGCAACCTATTATCCCTCGTCCTCCGCCTCCACGAGATATCCCTCAGGTATTCTCAACATGATACATAGATATACATGTTAGTTCAGTACTGAAATCTTTAAATCATGAATCCGACTCTAAAATTTTGTGTTGCACAGAATCCTAGACGTGTCGTTCATGATCCACCGTTGCAAGTAACAGAGAGACCATTTCTAGTACCTACTGGTGCAACAAGGTAAGCATTTCTTCTATCTTTTTTTCTTTTTTTTTGTCAGAATCCAAGATTTGATCATTTCAAGAACTACTTGCAGTTATCCATATCCAGGCCAACCACGACGTAGGCTAACTCATCCTCCTGTTCGCGTTCTACTCCATAACGATGATGTACCAAGACATGGATCATATCAGAGACCAAGCCAACTTCCATTCGATTCTCCTCCTCCTCCGTGGTTTATGCAGAGCAATGAAACGTCGAGGAATGAATCAAAATTGAGCCCAAATGAGCAAAAGGCAGCCTTAAATAAACTCAAGAAAGAAATCTACAATCCTGTACAAGCAAAAGTGGCAAAACAAGTGAACCTTTACTTTAGAGGCTTGAACAATACTACCACCAACGAATCGATCAAGGACAAAGATGAGGATGGTAAAAGATGTTCGATTTGCTTGGAAGATTTCGAGCCTAAAGAGATTGTGACAGTCACACCATGTAGTCATATGTTCCACGAAGACTGCATCGTTCCATGGGTGACAAATCATGGCTCGTGCCCTGTCTGTCGATTTGCTATCTGTGAAAGAATGAAACAGGACACAACAGACTCATCGACG</genome_strand>
        <mrna_strand>AACACAGAAAAATTTACAAACATGAACAGCAACAGGCCTCATAATTTTACACAACATGGAAATTGGAGCAATGGAGAGTGGCATGATCCTAATTCACATGGACCTGAGTACATATGGCAACCTATTATCCCTCGTCCTCCGCCTCCACGAGATATCCCTCAG...........................................................................................AATCCTAGACGTGTCGTTCATGATCCACCGTTGCAAGTAACAGAGAGACCATTTCTAGTACCTACTGGTGCAACAAG............................................................................TTATCCATATCCAGGCCAACCACGACGTAGGCTAACTCATCCTCCTGTTCGCGTTCTACTCCATAACGATGATGTACCAAGACATGGATCATATCAGAGACCAAGCCAACTTCCATTCGATTCTCCTCCTCCTCCGTGGTTTATGCAGAGCAATGAAACGTCGAGGAATGAATCAAAATTGAGCCCAAATGAGCAAAAGGCAGCCTTAAATAAACTCAAGAAAGAAATCTACAATCCTGTACAAGCAAAAGTGGCAAAACAAGTGAACCTTTACTTTAGAGGCTTGAACAATACTACCACCAACGAATCGATCAAGGACAAAGATGAGGATGGTAAAAGATGTTCGATTTGCTTGGAAGATTTCGAGCCTAAAGAGATTGTGACAGTCACACCATGTAGTCATATGTTCCACGAAGACTGCATCGTTCCATGGGTGACAAATCATGGCTCGTGCCCTGTCTGTCGATTTGCTATCTGTNGAAAGATGAAACAGGACACAACAGACTCATCGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320912" ref_strand="+" ref_description="SGN-U320912        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | peroxisomal membrane 22 kDa family protein, contains Mpv17 / PMP22 family domain, Pfam:PF04117 | chr2:17805363-17807083 REVERSE | Aliases: F7D19.23, F7D19_23(evalue: 1e-75, score=280) genbank/nr: gi|18406056|ref|NP_565983.1| peroxisomal membrane protein family (22 kDa) [Arabidopsis thaliana] gi|15450882|gb|AAK96712.1| Unknown protein [Arabidopsis thaliana] gi|20197967|gb|AAD21742.2| expressed protein [Arabidopsis thaliana] gi|20259846|gb|AAM13270.1| unknown protein [Arabidopsis thaliana](evalue: 8e-74, score=280)">
      <seq>gagaagagaggaacaaaaaaacaagaatgggttcattgagtggtggaaatggaagtatatggggaatgggatttttccattctcaagaatggaattctggaagaagaagaaggagaagtaatggtggaaaatcgtcaaattcggattcagtggatgcaaatggtggagctggttatcgttttcctctgaagcaagctatgacggctagctctcttgcacttagtggtgacaccattgctcagcttcgtgaccggtggctcaagaacaaagataatcttcctgatccatctcatcctaaggatatgattggtgcactcctatctgagcatgactggcttcggtcagtccggatggcttcatatggatttttgttatatggtcccggtacttatgcatggtactcatatcttgacagatgtatgcccaagcaaagcgtggagaatgtaatgatgaaggttttattaaaccaaatagtgctaggtccttctgtaatagctgttatctttgcatggaataatttatggctgggaaaactttcagaacttccaaacaagtatcagaaagatgcccttccaactttattgttcggatttaggttctggatccctgtcagcattttgaacttttgggccattcctcttcaagctcgtgttgcattcatgtctatggcctctatattctggaatttctgtttgtcagcaactatgagcaagtaactaccgtccaaaggattagctgggaagagcaggatcccgcaactgatataaccgcctatcaagacagagaaaatgatgtctggaggcaacagttgaaaccattctgattttccaaaagtggcttgcaccaggttctacagtgcctcagctcgcactaactacatatgatttgtttagaatatagtttcctttagtttcctagtgctataacgaaagacatatgtttggcttgttcgaccaattcttccgttgatttgctttcttttgtctggtttttggcattcttttccctgtctacacaatttataaacaagtgctgctacattatatatacgaaatcatcatgttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="39189" stop="11949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38889" g_stop="38591" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38590" i_stop="36158" i_length="2433">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36157" g_stop="36002" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="455" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36001" i_stop="35879" i_length="123">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35878" g_stop="35746" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="588" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35745" i_stop="35658" i_length="88">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35657" g_stop="35618" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="628" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35617" i_stop="35406" i_length="212">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35405" g_stop="35286" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="748" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35285" i_stop="35207" i_length="79">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35206" g_stop="34888" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="1067" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34887" i_stop="34567" i_length="321">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34566" g_stop="34561" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1068" r_stop="1073" r_length="6" r_score="0.833"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34560" i_stop="34176" i_length="385">
            <donor d_prob="0.535" d_score="0.00"/>
            <acceptor a_prob="0.911" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34175" g_stop="34160" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1074" r_stop="1089" r_length="16" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-U320912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1089</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38889" e_stop="38591"/>
          <exon e_start="36157" e_stop="36002"/>
          <exon e_start="35878" e_stop="35746"/>
          <exon e_start="35657" e_stop="35618"/>
          <exon e_start="35405" e_stop="35286"/>
          <exon e_start="35206" e_stop="34888"/>
          <exon e_start="34566" e_stop="34561"/>
          <exon e_start="34175" e_stop="34160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAGAGGAACAAAAAAACAAGAATGGGTTCATTGAGTGGTGGAAATGGAAGTATATGGGGAATGGGATTTTTCCATTCTCAAGAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCAAATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAGGTTAATTTTCTAAAAAAGATTGGAATTTGGTGAAATTTAAGGTTACTTATCTTGTAAAGTAACCAAATTTATTGGCTTTTGGAGTTGTGGGGTTTTTTGAAATATTGGTATTTCTTGAAACCCCACTTGGAATTCTTGAACTCATTTTGGGAATTTGGGGAACTATATAAAGGTCATGTTTGGCAGTTGTGATAATGTGAATTGTCTGTTTGTTAGTTCATGACTTGGTAAATTTGATTGCTTTTGATTTTTTATCTAACAATGAGTTAGGTTGAGAAACTCAGAGTAGGACAGATGTGCCAAATTTGAATACTTGACAGTGAAGTGAATAGAAAGTAGAGAGAAGGTTGGTTACATGGTACGAGAAGTTTGAATAGGGTGAAATTTATGTATCAAGAGCAGTATGAAGAGCTGATTAATATTCCGTGGTAAAAGAATAATTTTTTTAAGCAATTTATGTCAATGTGATCATAGTAAACGCGGAAGAGTTCATTCTGGCATAATTGCTGTTCTTTGATAATCATATAAAGTAAGTATTCCAAACCAATAATGATGTATCAGTTTGAAACCGATATTTATGATCTTACGAGGTAATTCGTGGGATTCAAATGAAAATGATTGAAAAAGAGGTTTGCCGTCTAACGAAATTTATGGTCTCAGGTGTCATTAGAATGTAATTATTGTCTGCAGAGTGTATCTGTATTGCACATAGATTCTTGTTGCTGTCCAAAAGGTAGTTCATATTCAGGGATAAAGTATTACCTCGAGGTGGTCCTTTTGTGGAAGCATGAGTGTGATGCCTCCCTGTGCTTTCAAGAACAACCAAGCAAAGTGGGAGGCAGGAATTAACACTGTCCGAGTATGTGCCTACTTCCACATATTTTGTTTCAGCATATATTCTGTTCAGTTCCAGTGGACCAACTTATTCCTAATCAATAGGCTCATTAGGCCTGTCTTTTTTTTTGCCCCTAGTGTATGTGCTTTTGGCTCTTAGCTATCCATATGTGTACTTAACTATGTTTTTTTTATGTCTTCTCACCGTAGTTGTCTGTCTTGAAAGAGGTTACGTATCCTCATTCTCTGACTCTGTTATTGACTAGACTTACATGACCCAAGGAATAATTTCATATGGTATGTAATTTTACCTTAAGTAACAAAATTAAAAAGCTTAAGAAAAGATTGTTTCAGAGACAACTTTAGACTCCCTTCAGCTGGTGCTTTACCTGCTTTAATCTCTTTTCGAAGATTAGTGTCCTGTCTATCACTAGTCTCCTTTGAGGTTTTCAAAACAGTATCTGCTGAGAATTTCCGGTTTTGAAGAGCATCATGCTAAGAACATGTTTTCATAAAATAGTTTACATGCACTCTAATGGTTAATCTCTTTGGCACATAGTGTTTGTGATTTAACCAGTCACATGTACTATATATGTGTCCCTTCTGTTTCCCCCCTTATCAGTAACAACACTTAAATTTCTAATTAGGTTATAGCCATTGATCCTCTATAGCCATCACTCTTCCAGTGATTAACTTGTTCCATTATTATTGACCTGCCTGTGTCTATTAACTTATCCATGCGGAGATATACAATATCGCATGCTTCCATAAAGAGAAAAGAATAGCCACGCAAAAAGAAATTCTAGATTTATTGCTTGTATTTGTGCTGTTGACACTACATACAATTAGAAAAAAGGAAAGAAATTACTTGCTAATCAGCTTGTTCTTTTGTTCTTTTGTGCATGTTGGGACTAGGGGGGGTCTAGAGTTTGCATATCCTTTGTATTTGATTATTTTATTCTCAGAAGGGAGGAGTGGGGGTTAATTAGGAAGTACTCTCTTGTACTCCTACCAGAGAAGAAGCAAATGGAGAAATCTTCTCCCGAGTGGTGCCTAGTGCTGCCCTCATCTACAGACCAAGGAAAAGGTCAATATTCCATCCACCTTTAGCACCCTCTCAAGCTTCACAACAAACGTTCCTTGATTGATCACTACACCACAAGCCAACTCCATTGGCATATTGGCAACCTTACAATCACTTGATCTATATATATTATGTACTTGTCTTTCTGTCAATTTTTGTTACCAATCAACCCCTTTTGGGAAATTTCATATTCTTTATGAACTAATTAAAACGGTGATCATTGGATTTTCTGTTCTTAAATATTATATCCAGCTTTAGGAGTTGATGCTAGTTGTACACTGAATTGATTCTCACATTTTGGCAATAGCTTATCTATATGTTTGCTAATACATCTTAACAGCTAAAGATTTTGCATGTCTTATGGCGTACTCAAAGAAAAGAAGAAGATTTTGCATGTTGTCTGCTCTCTCATAAAATGGCTTCTCTTTGCTATCTGATTCACTGAATTAAGAATGTATCTTGGGAGTATTTACACACTAATCTGAATTTTGTATTTGACCAAAATCTTGTTTTAGGATATGATTGGTGCACTCCTATCTGAGCATGACTGGCTTCGGTCAGTCCGGATGGCTTCATATGGATTTTTGTTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCAAGCAAAGCGTGGAGAATGTAATGATGAAGGTAGTTATGCTTCTGAGAAGAACCTCTTTCATGATGAGCTTGACCTACCAATGAAGAAAGAACTACTTCTATGCAAGTTTGACCTGTCCATCTAACTAGTACCTTTAATACTCTTTGTTTCAGGTTTTATTAAACCAAATAGTGCTAGGTCCTTCTGTAATAGCTGTTATCTTTGCATGGAATAATTTATGGCTGGGAAAACTTTCAGAACTTCCAAACAAGTATCAGAAAGATGCCCTTCCAACTTTATTGTTCGGTAAGCACTTCCATATGACATACCTTTGCCGGTTGCTTTAACTCCTCCTCCCTAGTGAAGTTTGATTTCATCCTTCATTCTCTTTCAGGATTTAGGTTCTGGATCCCTGTCAGCATTTTGAACTTTTGGTATGTCTTTTACTACTCCTTAGCCCCTTCCCCAACCTCATCCCAAAATATGGACAGATATAAAACAAAAACTTCTCATAATCTCTGTTAGTCTTGTCGTAATGGAGATCTTCTCATTCTCGTAAAAATGTTTTTCCTGAGATCATAGATGTTATTTTTTCTGAGTCTTTAGTATAATGAAATATGACAACTTCTGTGTTGAAAAATGATAGGGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCTGGAATTTCTGTTTGTCAGCAACTATGAGCAAGTAACTACCGTCCAAAGGATTAGCTGGGAAGAGCAGGTTCGTGCACACTCCTAGTCCAGTATTTGAGTTTTAGTATATCTCATGTCACGTATTAATATTAATCTGCTAATTTTAGGATCCCGCAACTGATATAACCGCCTATCAAGACAGAGAAAATGATGTCTGGAGGCAACAGTTGAAACCATTCTGATTTTCCAAAAGTGGCTTGCACCAGGTTCTACAGTGCCTCAGCTCGCACTAACTACATATGATTTGTTTAGAATATAGTTTCCTTTAGTTTCCTAGTGCTATAACGAAAGACATATGTTTGGCTTGTTCGACCAATTCTTCCGTTGATTTGCTTTCTTTTGTCTGGTTTTTGGCATTCTTTTCCCTGTCTACACAATTTATAAACAAGTGCTGCTACATTATATATACGAAATCATCATGTTAAAATTCTTGTGTTGGTAGAGTGTGTTATTATTATATCTTTGATAAGCATGATGTCAAAGTCATATGTATCGGTTACGACTCAATTTTAAACTAGTTGAGCTCGACTATGTGAATCCTCCATGCCTTCCACTCTCCTCTAGCTTCCGTTCTTTAGAATTTGATTCCTTTCTCACTTATGACGGTTCTGCTTCTGCAATTCCAAATGATCGAAACTGTGTAAAAACGAGTAGACAGTGAAAGACAGGAACTGTCATCCGTTGATCTTGCTGCACTGGAAAGTCACTTAAGGGTGTGTTTGGTATGGAGGAAAATGGAACATGCAGAAATAAGTTGGTTTCTTATTTATTTTTCTGGTGTTTGCCTCCGTCCATCTTTAATTGTCTAATATACTCTTTTGGGATGTACAATCATATTTGTCAAAATTTATAAACATAATTTATCATTTTGTGTCTACTTTACTATTGTCCATTTTTGGCAACACTTGACATGTTTAAGACCACAAAATTAAAGGGCATTTTGTTATATTTGGCATAACTTTCATTTAGAACCACAAGAATTGAAAGTCTTATTTTTTTTTTCTTAAAATTCCGTTCCAAGTCAAACTAGGTCATTTTTTTTTAAACGGAGGGAGTAGTTAATAAGGGTGAATTAGGAACTAGGTGATAAACTATTCATTGATTTTTCATACTCCCTCCGTCCACAAATGTTTGGCAGGTATACTAAAAATAGA</genome_strand>
        <mrna_strand>GAGAAGAGAGGAACAAAAAAACAAGAATGGGTTCATTGAGTGGTGGAAATGGAAGTATATGGGGAATGGGATTTTTCCATTCTCAAGAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCAAATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGATTGGTGCACTCCTATCTGAGCATGACTGGCTTCGGTCAGTCCGGATGGCTTCATATGGATTTTTGTTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCAAGCAAAGCGTGGAGAATGTAATGATGAAG...........................................................................................................................GTTTTATTAAACCAAATAGTGCTAGGTCCTTCTGTAATAGCTGTTATCTTTGCATGGAATAATTTATGGCTGGGAAAACTTTCAGAACTTCCAAACAAGTATCAGAAAGATGCCCTTCCAACTTTATTGTTCG........................................................................................GATTTAGGTTCTGGATCCCTGTCAGCATTTTGAACTTTTG....................................................................................................................................................................................................................GGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCTGGAATTTCTGTTTGTCAGCAACTATGAGCAAGTAACTACCGTCCAAAGGATTAGCTGGGAAGAGCAG...............................................................................GATCCCGCAACTGATATAACCGCCTATCAAGACAGAGAAAATGATGTCTGGAGGCAACAGTTGAAACCATTCTGATTTTCCAAAAGTGGCTTGCACCAGGTTCTACAGTGCCTCAGCTCGCACTAACTACATATGATTTGTTTAGAATATAGTTTCCTTTAGTTTCCTAGTGCTATAACGAAAGACATATGTTTGGCTTGTTCGACCAATTCTTCCGTTGATTTGCTTTCTTTTGTCTGGTTTTTGGCATTCTTTTCCCTGTCTACACAATTTATAAACAAGTGCTGCTACATTATATATACGAAATCATCATGTTAAA.................................................................................................................................................................................................................................................................................................................................AAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U314326" ref_strand="+" ref_description="SGN-U314326        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT3G14690.1 | Symbol: None | cytochrome P450, putative, similar to GB:Q05047 from (Catharanthus roseus) | chr3:4937386-4939472 FORWARD | Aliases: MIE1.19 (evalue: 9e-104, score=373) genbank/nr: cytochrome(evalue: 1e-107, score=392)">
      <seq>atttgaacttcaaacagaacaagctcagtatttcattgaagctgtacgctccgtttatatcccagggtggagttttttgccaacaaagaggaatcgaagaatgaaggaaatcgagaagcatgttcaggctacaattagaggaattattgataaaagagtgaaggcaatgacaggaggagaggcgaataacaaggatctacttggtatattgctcgaatcaaattttaaagaaatcaaacaacatggagacaaggactttggacttagcatcgaagaagtcattgaagaatgcaagttgttctattttgctggacaagaaactacatcggcgttgcttgtatggactctaattttgttgtgcagacatcacgattggcagacacgggccagaacagaggtattgcaagtgtttgggagtcggaaaccagattttgatggactgactcatctaaaagtagtgacaatgatcttgtacgaatcgttaaggttataccctccagtaacgacagttacacgccggcttaatgaagatgctgtactaggagatatatctctaccagcagacgtgctactctcattaccagcggtcttattacaccacgatgaagagatatggggtgaagacgcaaagaaattcaatccagagagatttagagaaggcgtttcaagtgcaacaaagggtcaagtcactttcttcccgtttacatggggtcctagaatatgcattggacaaaacttcgctatgttagaagcaaagatggtgttggctatgatcctacaacgtttctcattggatttatccacatcttatactcatgctcttcattccgttataactacgcaaccccaatatggtgctccacttattttacacaaactatagtttgtacttgtaagcagtgtcttgttatatgttaagagagagttcaaacatgattaataaaggcttgtagaactgcctattgtttgttttagagtttcaagtgtgcagatactgtatatggaaaatctacaacatccaagtaatttacttaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="47288" stop="45482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46988" g_stop="46917" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46916" i_stop="46823" i_length="94">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46822" g_stop="46438" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="457" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46437" i_stop="46360" i_length="78">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46359" g_stop="45784" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="1033" r_length="576" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1034" polyA_stop="1052"/>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-U314326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1033</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46988" e_stop="46917"/>
          <exon e_start="46822" e_stop="46438"/>
          <exon e_start="46359" e_stop="45784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAACTTCAAACAGAACAAGCTCAGTATTTCATTGAAGCTGTACGCTCCGTTTATATCCCAGGGTGGAGGTAAATTGATGTTGTCATACTATAGTCATTGTACTCGAATACAAAATCTCGTTCACTTATAGCTAGATTTCTTATTTATTGAACTATATCGTAGTTTTTTGCCAACAAAGAGGAATCGAAGAATGAAGGAAATCGAGAAGCATGTTCAGGCTACAATTAGAGGAATTATTGATAAAAGAGTGAAGGCAATGACAGGAGGAGAGGCGAATAACAAGGATCTACTTGGTATATTGCTCGAATCAAATTTTAAAGAAATCAAACAACATGGAGACAAGGACTTTGGACTTAGCATCGAAGAAGTCATTGAAGAATGCAAGTTGTTCTATTTTGCTGGACAAGAAACTACATCGGCGTTGCTTGTATGGACTCTAATTTTGTTGTGCAGACATCACGATTGGCAGACACGGGCCAGAACAGAGGTATTGCAAGTGTTTGGGAGTCGGAAACCAGATTTTGATGGACTGACTCATCTAAAAGTAGTAAGTATTATCGTTCAGTAATGCTTAAATCAGACGAAAATTGCATTGTAGTTCAACTGTTTGATGTTATATATGCAGGTGACAATGATCTTGTACGAATCGTTAAGGTTATACCCTCCAGTAACGACAGTTACACGCCGGCTTAATGAAGATGCTGTACTAGGAGATATATCTCTACCAGCAGACGTGCTACTCTCATTACCAGCGGTCTTATTACACCACGATGAAGAGATATGGGGTGAAGACGCAAAGAAATTCAATCCAGAGAGATTTAGAGAAGGCGTTTCAAGTGCAACAAAGGGTCAAGTCACTTTCTTCCCGTTTACATGGGGTCCTAGAATATGCATTGGACAAAACTTCGCTATGTTAGAAGCAAAGATGGTGTTGGCTATGATCCTACAACGTTTCTCATTGGATTTATCCACATCTTATACTCATGCTCTTCATTCCGTTATAACTACGCAACCCCAATATGGTGCTCCACTTATTTTACACAAACTATAGTTTGTACTTGTAAGCAGTGTCTTGTTATATGTTAAGAGAGAGTTCAAACATGATTAATAAAGGCTTGTAGAACTGCCTATTGTTTGTTTTAGAGTTTCAAGTGTGCAGATACTGTATATGGAAAATCTACAACATCCAAGTAATTTACTT</genome_strand>
        <mrna_strand>ATTTGAACTTCAAACAGAACAAGCTCAGTATTTCATTGAAGCTGTACGCTCCGTTTATATCCCAGGGTGGAG..............................................................................................TTTTTTGCCAACAAAGAGGAATCGAAGAATGAAGGAAATCGAGAAGCATGTTCAGGCTACAATTAGAGGAATTATTGATAAAAGAGTGAAGGCAATGACAGGAGGAGAGGCGAATAACAAGGATCTACTTGGTATATTGCTCGAATCAAATTTTAAAGAAATCAAACAACATGGAGACAAGGACTTTGGACTTAGCATCGAAGAAGTCATTGAAGAATGCAAGTTGTTCTATTTTGCTGGACAAGAAACTACATCGGCGTTGCTTGTATGGACTCTAATTTTGTTGTGCAGACATCACGATTGGCAGACACGGGCCAGAACAGAGGTATTGCAAGTGTTTGGGAGTCGGAAACCAGATTTTGATGGACTGACTCATCTAAAAGTA..............................................................................GTGACAATGATCTTGTACGAATCGTTAAGGTTATACCCTCCAGTAACGACAGTTACACGCCGGCTTAATGAAGATGCTGTACTAGGAGATATATCTCTACCAGCAGACGTGCTACTCTCATTACCAGCGGTCTTATTACACCACGATGAAGAGATATGGGGTGAAGACGCAAAGAAATTCAATCCAGAGAGATTTAGAGAAGGCGTTTCAAGTGCAACAAAGGGTCAAGTCACTTTCTTCCCGTTTACATGGGGTCCTAGAATATGCATTGGACAAAACTTCGCTATGTTAGAAGCAAAGATGGTGTTGGCTATGATCCTACAACGTTTCTCATTGGATTTATCCACATCTTATACTCATGCTCTTCATTCCGTTATAACTACGCAACCCCAATATGGTGCTCCACTTATTTTACACAAACTATAGTTTGTACTTGTAAGCAGTGTCTTGTTATATGTTAAGAGAGAGTTCAAACATGATTAATAAAGGCTTGTAGAACTGCCTATTGTTTGTTTTAGAGTTTCAAGTGTGCAGATACTGTATATGGAAAATCTACAACATCCAAGTAATTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="65463" stop="66711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65763" g_stop="66411" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65763" e_stop="66411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAATGAGAGCGATTTAAAAGAACCTGAAAAGGAGGATCAAAAGCCACAGACAGAAACTGATATCCCAGAATCTATGCCATCAGATATCCATCGGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGCCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAAGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGACAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGAGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATTTGGAGCTTGAACAACTTGATGTGAAGACAACGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="66122" stop="67529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66422" g_stop="67229" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66422" e_stop="67229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGAAAGCTATATGGTGATGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCACTCGAAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTGCCAATATCCATCTCACGACCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTTTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAAAGAACATTGGCAGGCTGTGAAGAGAATTTTTCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGATATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTTGAAGACAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340073" ref_strand="+" ref_description="SGN-U340073        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lectin protein kinase family protein, contains Pfam domains, PF01453: Lectin (probable mannose binding) and PF00069: Protein kinase domain | chr4:15599481-15602601 FORWARD | Aliases: F10M6.60, F10M6_60(evalue: 3e-67, score=251) genbank/nr: gi|50922701|ref|XP_471711.1| OSJNBa0079M09.4 [Oryza sativa (japonica cultivar-group)] >gi|38344588|emb|CAE05335.2| OSJNBa0079M09.4 [Oryza sativa (japonica cultivar-group)] (evalue: 7e-80, score=291)">
      <seq>tgatttcagcagtaagcttggggaaggaggatttggctgtgtttatgaaggaacactgagaaatggcactaaaatagctgtgaagcatctggatggtgtaggtcaagtaaaggaatcattcttaacagaagtaaaggcagtcggtggcattcaccatatcaatctggtaaaactcattggattttgtgccgaaaaaacccacaggcttctaatctatgagtacatggtgaatggatcgcttgataggtggattacaatgaaaaaccgagaaaatgggcttacatggagcacaagacagaggataatatcagatatcgccaaagggttagcgtatctacatgaggattgcagccaaaagataattcatttggacatcaaaccacaaaacatccttctggatcaatatctcaatgctaagatatcagattttgggttgtcgaagctaattgagaaagacaaaagcaaagtcgtgactagaatgagaggaacacggggttatttagcccctgaatggttgagctcggtaatcactgagaaagttgatgtgtatgcttttggaattgtcctcttggaaattctctgtgggcggaagaatttggactggtcccaagctgatgaagaagatgtccatttgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="84650" stop="82994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84351" g_stop="84059" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84058" i_stop="83638" i_length="421">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83637" g_stop="83294" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="638" r_length="344" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-U340073" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84351" e_stop="84059"/>
          <exon e_start="83637" e_stop="83294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTAGTAGTAAGCTT-GGGAAGGAGGATTTGGCTCTGTTTATAAAGGAACACTGCGAGATGGCACCAAAATAGCTGTGAAGCATCTGGATGGTGTAGGTCAAGTAAAGGAATCATTCTTAACAGAAGTTAAGGCGGTCGGTGGCATTCACCATATCAACTTGGTAAAACTCATCGGATTTTGTGCTGAAAAATGCCACAGGCTTCTAATCTATGAGTACATGGTGAATGGATCACTGGATAGGTGGATTATACATG-AAAACTGAGAAAATGGGCTTACATGGAGCACAAGGCAGAGGATTGTGAAAAATAATAAAGTTGATTTTGGGAATGATAGATTGTTCTAGTAATGTTTCTAGAATAGTGTACGATAATATCTAGGATAAAAAATATCTAGATATTCTAGGGTAGAAGATAAAGATCACTAGAATTTTCTTTGTAGAAGTATCTACAAGAATTTCTAGAATCATCCATGAACAAGTATAAATATGGATGGTCTTGTACATTTGTAAGCAACCCAAAATCCAAATCAACTAGTCTTCTTCTATATCAAAGTTTTCTTGTTCAAAATATTCCTTCTCCTTTCTAGCTTCCTCTTCCTTAGTTGAATCTTCCGATCTTAGTTAACGATCTTGGGCTAGCAGAAGGGTTCCCCAATTATACTCACTGGATAGGTGGATTATACATGAAAACCGAGAAAATGGGAGCACAAGGCAGAGGATAATATCAGATATCGCCAAAGGGTTAGCGTATCTACATGAAGATTGCAGCCAAAAGATAATTCATTTGGACATCAAACCACAAAACAGCCTTCTGGATCAATATCTCAATGCCAAGATATCAGATTTTGGGTTGTTGAAGCTAATTGAGAAAGACAAAAGCAACGTTTTGACTAGAATGAGAGGAAAACGGGGTTATTTAGCCCCTGAATGGTTGAGCTCCGTAATCACTGAGAAAGTTTATGTTTATGCTTTTGGAATAGTCTTCTTGGAAATTCTCTGTGGGCGAAAGAATTTGGATAGGTCCCAAGCTGATGAAGAAGATGTCCATTTGCTAA</genome_strand>
        <mrna_strand>TGATTTCAGCAGTAAGCTTGGGGAAGGAGGATTTGGCTGTGTTTATGAAGGAACACTGAGAAATGGCACTAAAATAGCTGTGAAGCATCTGGATGGTGTAGGTCAAGTAAAGGAATCATTCTTAACAGAAGTAAAGGCAGTCGGTGGCATTCACCATATCAATCTGGTAAAACTCATTGGATTTTGTGCCGAAAAAACCCACAGGCTTCTAATCTATGAGTACATGGTGAATGGATCGCTTGATAGGTGGATTACA-ATGAAAAACCGAGAAAATGGGCTTACATGGAGCACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGGATAATATCAGATATCGCCAAAGGGTTAGCGTATCTACATGAGGATTGCAGCCAAAAGATAATTCATTTGGACATCAAACCACAAAACATCCTTCTGGATCAATATCTCAATGCTAAGATATCAGATTTTGGGTTGTCGAAGCTAATTGAGAAAGACAAAAGCAAAGTCGTGACTAGAATGAGAGGAACACGGGGTTATTTAGCCCCTGAATGGTTGAGCTCGGTAATCACTGAGAAAGTTGATGTGTATGCTTTTGGAATTGTCCTCTTGGAAATTCTCTGTGGGCGGAAGAATTTGGACTGGTCCCAAGCTGATGAAGAAGATGTCCATTTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335078" ref_strand="+" ref_description="SGN-U335078        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="95842" stop="94660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95542" g_stop="95358" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95357" i_stop="95279" i_length="79">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95278" g_stop="94946" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="515" r_length="331" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-U335078" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95542" e_stop="95358"/>
          <exon e_start="95278" e_stop="94946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTT-GTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCGCGTTCCGACACCAAGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCTGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATTGAGTAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAGTCTTGAAAGACGATAATATATTCAAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTATCTGATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAG-A-ATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATG...............................................................................GATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGC-AATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335319" ref_strand="+" ref_description="SGN-U335319        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gaaaaactggcagaaatgacggaccccacgacggaccatcatgggcacgacggaccgtcgcagggtctcatttcaaaacacttaggaaatctgaaattgggtactgaaaatcgactctctgaacttcgtaacggaatggcaagacggaccgtcacaggcgtgatggaccatcacagagtcttcagtgaaaatccagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacaacgggctgtcacaggctgcgtaaatcccagtctgagtcggaattcctcaattgttttaagggacgtttttgactattcctgctttaattataaagttagtgggttaatgttaataagtctaattacttgggggttaaaagaggtaaccttaagttaattagtgggttattattgccatattttattcttaattatatactaattagggtaaaagaaagagggtttgaataaagaaaatagaaagaacaagagaaagagagagaaagtcgaacgagaaagaggatcgaacgagaggaaaaaacacaaagcttgggaaatcacttgcttgatcacgaatcttcggtggaggtaggttatggtttctcttacgatattcgtagtaagctcttaatagcgaataatatgtattgataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="96608" stop="95351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96308" g_stop="95651" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-U335319" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96308" e_stop="95651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACTGGCAGAAGCGACAGACCCCACGATGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGCGATGACCTGCAGGACGGACCGTCGCAGGCACAACGGGCCGTCACAGACTGCG-AAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGATGTTTTGGACTATTCCTACTTTAATAATAAAGTTAGAGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGTCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAACACAAAGAATAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAAAACACAAAGCTTGGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATT</genome_strand>
        <mrna_strand>GAAAAACTGGCAGAAATGACGGACCCCACGACGGACCATCATGGGCACGACGGACCGTCGCAGGGTCTCATTTCAAAACACTTAGGAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAAGACGGACCGTCACAGGCGTGATGGACCATCACAGAGTCTTCAGTGAAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACAACGGGCTGTCACAGGCTGCGTAAATCCCAGTCTGAGTCGGAATTCCTCAATTGTTTTAAGGGACGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATATTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGG--AAAAAACACAAAGCTTGGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAGCTCTTAATAGCGAATAATATGTATTGATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="96712" stop="97489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97012" g_stop="97188" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97012" e_stop="97188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAAACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="98197" stop="99499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98499" g_stop="99199" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="712" r_length="700" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98499" e_stop="99199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCGGCGGTAGTAGCTAGCTAACCCAATAAAGCTCCTTATTTCTGACACGTTAGTGGGTCTTACCCAATTCTTCACTGTCTCAACCTTAGAAGGATCCACCATCACTCCTTACTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCATTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAACACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGGGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>AAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="98707" stop="99965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99007" g_stop="99665" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99007" e_stop="99665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGGGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTGTAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAGAAACTTATGGACCACCGAAACTGACTCAATCGAAGGTACATGGGTAGTGTCGTCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGTTTGGCTAACGTCACTGTTTTAGAATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAATTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="102152" stop="98795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101852" g_stop="101666" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101665" i_stop="99573" i_length="2093">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99572" g_stop="99059" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101852" e_stop="101666"/>
          <exon e_start="99572" e_stop="99059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGCTTACGAGGCTAGGTTTCACGCACTATCCAGATATGCCACGCAACTTTGTTTCAGTCCACAAGAGAGGATTCGCCGGTTTGTGAAGGGGTTGAGATCAGAGTTGCGAATTTCGGCCTTACAGGTAGCGGCTACAGCAAAATCCTTCCAAGAAGTGGTAGACTTCGTGATAGAGGTGGAAGGAGTGAAGCCCGATGACTTCACCTCGACATCGACATCAAAAAGGTTTCGAAAGAGAGGTGAGTTTAATGGTTCTTGCTCTAGAGGACAAGGTTCCGGAGGTTACGCAGTTCAACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACTGCATGGGCTCAGCTCCATGACGTTGCAACATTATCTGACGTGGCTCTCCTGAAGCGGCTGCGGAATGCCGCCGACTGGTTTGGCATACTTGCCGCACAAACACTTGCTGTACGCGCCGCAGTTACGGGTTGTACAAGCGGAAAGAGATTGCGTCTTGTCGATGGAACAGCAATCAGTGCGCCCGGGGGCGGCAGCGCTGAATGGCGACTACATATGGGATATGATCCTCATACCTGTCAGTTCACTGATTTTGAGCTAACCGACAGCAGAGACGCTGAACGGCTGGACCGATTTGCGCAAACGGCAGACGAGATACGCATTGCTGACCGGGGATTCGGTTCGCGTCCCGAATGTATCCGCTCACTTGCTTTTGGAGAAGCTGATTATATCGTCCGGGTTCACTGGCGAGGATTGCGCTGGTTAACTGCAGAAGGAATGCGCTTTGACATGATGGGTTTTCTGCGCGGGCTGGATTGCGGTAAGAACGGTGAAACCACTGTAATGATAGGCAATTCAGGTAATAAAAAAGCCGGAGCTCCCTTTCCGGCACGTCTCATTGCCGTATCACTTCCTCCCGAAAAAGCATTAATCAGTAAAACCCGACTGCTCAGCGAGAATCGTCGAAAAGGACGAGTAGTTCAGGCGGAAACGCTGGAAGCAGCGGGCCATGTGCTATTGCTAACATCATTACCGGAAGATGAATATTCAGCAGAGCAAGTGGCTGATTGTTACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAGTTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCCAGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAAAAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAGAATGGCTGAGGTGATGGGCAACCTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGGGTGAGAGGGCCCATTGCTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAAATTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTGGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATTCTAAAACAGTGACGTTAGCCAAACCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCATGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGACGACACTACCCATGTACCTTCGATTGAGTCAGTTTCGGTGGTCCATAAGTTTCTAGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTCTGTATTGACCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTACAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="98776" stop="100133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99076" g_stop="99833" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99076" e_stop="99833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTGTAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAGAAACTTATGGACCACCGAAACTGACTCAATCGAAGGTACATGGGTAGTGTCGTCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGTTTGGCTAACGTCACTGTTTTAGAATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAATTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="99179" stop="100105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99479" g_stop="99809" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99479" e_stop="99809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGTTTGGCTAACGTCACTGTTTTAGAATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAATTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="99386" stop="101893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99686" g_stop="100147" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100148" i_stop="101496" i_length="1349">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101497" g_stop="101593" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="559" r_length="97" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99686" e_stop="100147"/>
          <exon e_start="101497" e_stop="101593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAGCAATGGGCCCTCTCACCCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGGTTGCCCATCACCTCAGCCATTCTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATACTGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAATCCAGCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATCGCAGACGGTAACAATCAGCCACTTGCTCTGCTGAATATTCATCTTCCGGTAATGATGTTAGCAATAGCACATGGCCCGCTGCTTCCAGCGTTTCCGCCTGAACTACTCGTCCTTTTCGACGATTCTCGCTGAGCAGTCGGGTTTTACTGATTAATGCTTTTTCGGGAGGAAGTGATACGGCAATGAGACGTGCCGGAAAGGGAGCTCCGGCTTTTTTATTACCTGAATTGCCTATCATTACAGTGGTTTCACCGTTCTTACCGCAATCCAGCCCGCGCAGAAAACCCATCATGTCAAAGCGCATTCCTTCTGCAGTTAACCAGCGCAATCCTCGCCAGTGAACCCGGACGATATAATCAGCTTCTCCAAAAGCAAGTGAGCGGATACATTCGGGACGCGAACCGAATCCCCGGTCAGCAATGCGTATCTCGTCTGCCGTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGTTAGCTCAAAATCAGTGAACTGACAGGTATGAGGATCATATCCCATATGTAGTCGCCATTCAGCGCTGCCGCCCCCGGGCGCACTGATTGCTGTTCCATCGACAAGACGCAATCTCTTTCCGCTTGTACAACCCGTAACTGCGGCGCGTACAGCAAGTGTTTGTGCGGCAAGTATGCCAAACCAGTCGGCGGCATTCCGCAGCCGCTTCAGGAGAGCCACGTCAGATAATGTTGCAACGTCATGGAGCTGAGCCCATGCAGTGACTTCACGTAATGACATCCCCCCGGGGCCGTAAGCCAGCCCCAGACGTAGCAGAGTTGCAGCATCACGAATTTCGCGGCGGCGGGTTAGAGCCCCGGCATTACGTGCCGAAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTTGAACTGCGTAACCTCCGGAACCTTGTCCTCTAGAGCAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="+" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="99390" stop="102711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99690" g_stop="100147" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100148" i_stop="101496" i_length="1349">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101497" g_stop="102474" g_length="978"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="1437" r_length="979" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="+" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>1436</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99690" e_stop="100147"/>
          <exon e_start="101497" e_stop="102474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAGCAATGGGCCCTCTCACCCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGGTTGCCCATCACCTCAGCCATTCTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATACTGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAATCCAGCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATCGCAGACGGTAACAATCAGCCACTTGCTCTGCTGAATATTCATCTTCCGGTAATGATGTTAGCAATAGCACATGGCCCGCTGCTTCCAGCGTTTCCGCCTGAACTACTCGTCCTTTTCGACGATTCTCGCTGAGCAGTCGGGTTTTACTGATTAATGCTTTTTCGGGAGGAAGTGATACGGCAATGAGACGTGCCGGAAAGGGAGCTCCGGCTTTTTTATTACCTGAATTGCCTATCATTACAGTGGTTTCACCGTTCTTACCGCAATCCAGCCCGCGCAGAAAACCCATCATGTCAAAGCGCATTCCTTCTGCAGTTAACCAGCGCAATCCTCGCCAGTGAACCCGGACGATATAATCAGCTTCTCCAAAAGCAAGTGAGCGGATACATTCGGGACGCGAACCGAATCCCCGGTCAGCAATGCGTATCTCGTCTGCCGTTTGCGCAAATCGGTCCAGCCGTTCAGCGTCTCTGCTGTCGGTTAGCTCAAAATCAGTGAACTGACAGGTATGAGGATCATATCCCATATGTAGTCGCCATTCAGCGCTGCCGCCCCCGGGCGCACTGATTGCTGTTCCATCGACAAGACGCAATCTCTTTCCGCTTGTACAACCCGTAACTGCGGCGCGTACAGCAAGTGTTTGTGCGGCAAGTATGCCAAACCAGTCGGCGGCATTCCGCAGCCGCTTCAGGAGAGCCACGTCAGATAATGTTGCAACGTCATGGAGCTGAGCCCATGCAGTGACTTCACGTAATGACATCCCCCCGGGGCCGTAAGCCAGCCCCAGACGTAGCAGAGTTGCAGCATCACGAATTTCGCGGCGGCGGGTTAGAGCCCCGGCATTACGTGCCGAAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTTGAACTGCGTAACCTCCGGAACCTTGTCCTCTAGAGCAAGAACCATTAAACTCACCTCTCTTTCGAAACCTTTTTGATGTCGATGTCGAGGTGAAGTCATCGGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGGAAGGATTTTGCTGTAGCCGCTACCTGTAAGGCCGAAATTCGCAACTCTGATCTCAACCCCTTCACAAACCGGCGAATCCTCTCTTGTGGACTGAAACAAAGTTGCGTGGCATATCTGGATAGTGCGTGAAACCTAGCCTCGTAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTCTTCCTATCCCTCAAAGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTCGGTTGACACTCAACATCTGATCGCCACCACATTTTGGCGTTCCCTTGAAACTTATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTG-AAATTTCATGTTGATCATTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGTTTATTTCCAATGGAACATCCATGCTGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTTGTTCATTCTCCCCAT-CATCCCCTTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATTAGATGGGTT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="103143" stop="102252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102843" g_stop="102552" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102843" e_stop="102552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGACTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCAGCAGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACC-G--GC--CA-GACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-h2yYfY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335319" ref_strand="+" ref_description="SGN-U335319        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gaaaaactggcagaaatgacggaccccacgacggaccatcatgggcacgacggaccgtcgcagggtctcatttcaaaacacttaggaaatctgaaattgggtactgaaaatcgactctctgaacttcgtaacggaatggcaagacggaccgtcacaggcgtgatggaccatcacagagtcttcagtgaaaatccagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacaacgggctgtcacaggctgcgtaaatcccagtctgagtcggaattcctcaattgttttaagggacgtttttgactattcctgctttaattataaagttagtgggttaatgttaataagtctaattacttgggggttaaaagaggtaaccttaagttaattagtgggttattattgccatattttattcttaattatatactaattagggtaaaagaaagagggtttgaataaagaaaatagaaagaacaagagaaagagagagaaagtcgaacgagaaagaggatcgaacgagaggaaaaaacacaaagcttgggaaatcacttgcttgatcacgaatcttcggtggaggtaggttatggtttctcttacgatattcgtagtaagctcttaatagcgaataatatgtattgataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-cyvSH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0020F06.1" temp_strand="-" temp_description="C07SLe0020F06.1  AC210367.1 htgs_phase:2 submitted_to_sgn_as:C07SLe0020F06 sequenced_by:ensat">
        <position start="105005" stop="103748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104705" g_stop="104048" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0020F06.1" gen_strand="-" ref_id="SGN-U335319" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0020F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104705" e_stop="104048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACTGGCAGAAGCGACAGACCCCACGACGGACTGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGCGACGACCTGCAGGACGGACCGTTGCAGGCACGACGGGCCGTCACAGACTGTG-AAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGAGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGTCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAACAGAAAGAACAAGAGAAAGAGAGAGAAATTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAAAACACAAAGCTTAGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATT</genome_strand>
        <mrna_strand>GAAAAACTGGCAGAAATGACGGACCCCACGACGGACCATCATGGGCACGACGGACCGTCGCAGGGTCTCATTTCAAAACACTTAGGAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAAGACGGACCGTCACAGGCGTGATGGACCATCACAGAGTCTTCAGTGAAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACAACGGGCTGTCACAGGCTGCGTAAATCCCAGTCTGAGTCGGAATTCCTCAATTGTTTTAAGGGACGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATATTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGG--AAAAAACACAAAGCTTGGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAGCTCTTAATAGCGAATAATATGTATTGATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>25</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2055" PGL_stop="6120"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2055" e_stop="2324"/>
            <exon e_start="2539" e_stop="2685"/>
            <exon e_start="5114" e_stop="5828"/>
            <exon e_start="6097" e_stop="6120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.708"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2055" e_stop="2324" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="2325" i_stop="2538" i_length="214"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2539" e_stop="2685" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2686" i_stop="5113" i_length="2428"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5114" e_stop="5828" e_length="715"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5829" i_stop="6096" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="0.708">
            <gDNA_exon_boundary e_start="6097" e_stop="6120" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2055" stop="2324"/>
              <exon start="2539" stop="2685"/>
              <exon start="5114" stop="5828"/>
              <exon start="6097" stop="6120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323323" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG : TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG : GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGATCCACGTGGAACGACAGTGACGTGGCGTTAATGTTGCCGATTCGAGAAGAGGATCAGTCGTTGTACGGTGATCTCGGTGAATTACCGGAATGTTCAGTTGTTTTCCGGCGGTACAGTGTGGAAACTCCCTGCTGCGGAGGTACAGGATAACAAATCATTTGTCAATTTTTCACTGAAATTGCCATATTTTTATTTTTTAATTATCTTCCTGACTTTTGGTTCCACGTTCTTCGTGACCCTTTTTTTTAATTTTATTTTTATGTAAAGATCTGGTAGATTAAAAAAAAAAAGAAATATACTTTGATTTGATTTTTACTTGAA : AAAAAAAAAAAAAACTATATTCAA</gDNA_template>
            <first_frame> L  F  I  F  S  H  F  F  F  *  F  L  Y  D  I  K  Q  N  L  V  N  P  Q  K  V  F  I  F  F  L  F  F  F  *  V  I  *  V  I  F  V  F  F  G  H  G  R  *  F  I  Q  K  S  I  F  S  *  T  R  R  F  H  R  N  S  T  G  *  C  C  *  F  L  F  F  R  *  *  S  G  G  S  *  H  A  I  T  *  K  K  :  *  E  R  S  K  K  E  S  N  F  S  A  N  N  *  R  *  W  I  K  K  *  R  G  S  L  S  T  T  R  F  L  V  L  E  K  I  W  T  K  T  N  *  R  I  T  L  S  Q  :  G  I  L  S  M  Q  *  L  Q  R  L  S  R  Q  K  T  S  R  A  *  P  P  G  P  H  H  A  S  H  Y  L  L  L  R  T  Q  S  P  N  P  G  R  R  R  R  Q  T  P  P  S  Q  P  P  Y  Y  H  H  Q  F  T  H  Y  L  Y  R  H  R  R  R  Q  *  C  Y  C  G  C  S  H  G  L  Y  R  S  R  Q  I  I  P  R  R  T  R  S  I  C  L  S  T  R  *  W  I  F  R  A  R  R  *  V  R  L  V  F  R  Y  G  N  N  N  Y  V  Y  G  E  Y  V  V  V  H  G  G  I  H  V  E  R  Q  *  R  G  V  N  V  A  D  S  R  R  G  S  V  V  V  R  *  S  R  *  I  T  G  M  F  S  C  F  P  A  V  Q  C  G  N  S  L  L  R  R  Y  R  I  T  N  H  L  S  I  F  H  *  N  C  H  I  F  I  F  *  L  S  S  *  L  L  V  P  R  S  S  *  P  F  F  L  I  L  F  L  C  K  D  L  V  D  *  K  K  K  E  I  Y  F  D  L  I  F  T  *   : K  K  K  K  K  L  Y  S  </first_frame>
            <second_frame>  F  L  F  S  L  I  F  S  S  N  F  Y  M  I  *  N  K  I  *  L  I  L  K  K  F  L  F  S  F  F  F  F  S  K  L  Y  K  L  F  L  C  F  L  V  M  E  D  S  S  Y  K  N  L  F  F  H  K  Q  E  D  S  T  G  T  P  P  D  N  A  A  D  S  C  F  S  G  D  E  A  A  E  V  S  M  P  S  P  R  K  S :   R  R  G  A  K  K  K  V  I  S  V  P  I  I  E  G  D  G  S  R  S  K  G  E  V  Y  P  P  Q  D  S  W  S  W  R  K  Y  G  Q  K  P  I  K  G  S  P  Y  P  R :   G  Y  Y  R  C  S  S  S  K  G  C  P  A  R  K  Q  V  E  R  S  R  L  D  P  T  M  L  L  I  T  Y  C  S  E  H  N  H  Q  I  P  A  A  A  A  A  K  H  H  H  H  N  H  P  T  T  T  T  S  S  P  T  T  S  T  G  T  A  G  D  N  N  A  T  A  A  V  A  T  D  S  T  V  V  D  K  S  S  P  E  E  P  D  L  F  A  Y  Q  H  D  N  G  F  S  E  L  A  G  E  L  G  W  F  S  D  M  G  T  T  T  T  F  M  E  S  T  S  S  S  M  A  G  S  T  W  N  D  S  D  V  A  L  M  L  P  I  R  E  E  D  Q  S  L  Y  G  D  L  G  E  L  P  E  C  S  V  V  F  R  R  Y  S  V  E  T  P  C  C  G  G  T  G  *  Q  I  I  C  Q  F  F  T  E  I  A  I  F  L  F  F  N  Y  L  P  D  F  W  F  H  V  L  R  D  P  F  F  *  F  Y  F  Y  V  K  I  W  *  I  K  K  K  K  K  Y  T  L  I  *  F  L  L  E  :  K  K  K  K  N  Y  I  Q </second_frame>
            <third_frame>   F  Y  F  L  S  F  F  L  L  I  S  I  *  Y  K  T  K  F  S  *  S  S  K  S  F  Y  F  L  S  F  F  F  L  S  Y  I  S  Y  F  C  V  F  W  S  W  K  I  V  H  T  K  I  Y  F  F  I  N  K  K  I  P  P  E  L  H  R  I  M  L  L  I  L  V  F  P  V  M  K  R  R  K  L  A  C  H  H  L  E  K   : V  G  E  E  Q  K  R  K  *  F  Q  C  Q  *  L  K  V  M  D  Q  E  V  K  G  K  F  I  H  H  K  I  L  G  L  G  E  N  M  D  K  N  Q  L  K  D  H  L  I  P   : G  D  I  I  D  A  V  A  P  K  A  V  P  P  E  N  K  S  S  V  A  A  W  T  P  P  C  F  S  L  P  I  A  P  N  T  I  T  K  S  R  P  P  P  P  P  N  T  T  I  T  T  T  L  L  P  P  P  V  H  P  L  P  L  P  A  P  P  E  T  I  M  L  L  R  L  *  P  R  T  L  P  *  *  T  N  H  P  P  K  N  Q  I  Y  L  L  I  N  T  I  M  D  F  Q  S  S  P  V  S  *  V  G  F  P  I  W  E  Q  Q  L  R  L  W  R  V  R  R  R  P  W  R  D  P  R  G  T  T  V  T  W  R  *  C  C  R  F  E  K  R  I  S  R  C  T  V  I  S  V  N  Y  R  N  V  Q  L  F  S  G  G  T  V  W  K  L  P  A  A  E  V  Q  D  N  K  S  F  V  N  F  S  L  K  L  P  Y  F  Y  F  L  I  I  F  L  T  F  G  S  T  F  F  V  T  L  F  F  N  F  I  F  M  *  R  S  G  R  L  K  K  K  R  N  I  L  *  F  D  F  Y  L  K :   K  K  K  K  T  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2113" stop="2324"/>
                    <exon start="2539" stop="2685"/>
                    <exon start="5114" stop="5657"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILKKFLFSFFFFSKLYKLFLCFLVMEDSSYKNLFFHKQEDSTGTPPDNAADSCFSGDEAAEVSMPSPRKSRRGAKKKVISVPIIEGDGSRSKGEVYPPQDSWSWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRLDPTMLLITYCSEHNHQIPAAAAAKHHHHNHPTTTTSSPTTSTGTAGDNNATAAVATDSTVVDKSSPEEPDLFAYQHDNGFSELAGELGWFSDMGTTTTFMESTSSSMAGSTWNDSDVALMLPIREEDQSLYGDLGELPECSVVFRRYSVETPCCGGTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11943" PGL_stop="6561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11943" e_stop="11623"/>
            <exon e_start="7448" e_stop="6561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11943" e_stop="11623" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11622" i_stop="7449" i_length="4174"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="7448" e_stop="6561" e_length="888"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11943" stop="11623"/>
              <exon start="7448" stop="6561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319627" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG : GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAAGTGTATTTCCTGAGCTGAGTAGCAATGTTTGTTGTTCATGATATGTGTAGTTTGATAAATTAAAGTAGAACATGGCAAGGTGTGCCCAGAGTTGATTTAAGTGGATGA</gDNA_template>
            <first_frame> Y  F  F  L  L  Q  N  *  I  F  S  V  N  F  Y  Y  L  V  N  Q  E  V  K  L  Q  S  K  S  R  Y  S  F  E  D  G  R  L  Q  R  *  *  *  V  *  L  P  F  Q  A  C  V  D  R  *  F  R  C  G  *  I  *  S  A  F  Q  V  H  Q  K  *  I  Q  F  G  V  *  I  N  Y  W  G  *  I  C  N  Q  K  S  *  Y  *  W  *  S  Y  *  S  S  D  L  G  Y  C  W  S  R  K  :  V  S  C  H  Y  E  C  L  L  S  G  S  C  R  C  F  A  R  I  *  C  Y  S  T  C  Y  L  *  K  R  Q  Q  V  V  E  G  I  E  R  P  Y  *  P  *  H  C  S  H  A  P  R  Q  Q  I  R  S  P  T  S  R  G  C  F  N  *  R  G  *  I  F  G  R  E  G  S  P  I  L  H  G  N  F  C  I  R  S  D  Q  R  *  K  C  V  Y  *  S  S  H  A  D  I  P  D  R  Q  *  E  S  S  R  G  R  G  R  R  C  Y  F  N  R  T  T  *  R  T  D  D  *  Y  Q  R  *  R  I  C  L  E  K  V  W  V  L  F  E  L  G  L  T  *  D  N  S  S  S  F  I  Y  Q  L  *  I  V  I  K  S  M  I  S  S  P  C  F  L  S  L  W  V  S  R  L  W  D  I  R  F  I  L  *  S  *  E  Y  V  K  Q  R  V  L  M  K  N  S  E  G  G  S  G  T  A  S  F  *  L  Q  N  V  *  T  R  S  *  F  Y  V  F  W  L  M  A  *  K  T  G  D  I  F  A  I  T  C  Y  R  I  S  S  Y  L  S  R  I  Y  V  L  I  I  F  P  L  L  K  V  Y  F  L  S  *  V  A  M  F  V  V  H  D  M  C  S  L  I  N  *  S  R  T  W  Q  G  V  P  R  V  D  L  S  G  * </first_frame>
            <second_frame>  I  F  F  F  F  K  I  E  S  F  Q  *  T  F  T  I  W  S  I  K  K  *  N  Y  R  A  K  A  D  I  V  L  K  M  A  G  Y  R  G  D  D  E  Y  D  Y  L  F  K  L  V  L  I  G  D  S  G  V  G  K  S  N  L  L  S  R  F  T  K  N  E  F  N  L  E  S  K  S  T  I  G  V  E  F  A  T  K  S  L  N  I  D  G  K  V  I  K  A  Q  I  W  D  T  A  G  Q  E  R :   Y  R  A  I  T  S  A  Y  Y  R  G  A  V  G  A  L  L  V  Y  D  V  T  R  H  V  T  F  E  N  V  N  R  W  L  K  E  L  R  D  H  T  D  P  N  I  V  V  M  L  L  G  N  K  S  D  L  R  H  L  V  A  V  S  T  E  E  A  K  S  L  A  E  R  E  A  L  Y  F  M  E  T  S  A  L  E  A  T  N  V  E  N  A  F  T  E  A  L  T  Q  I  Y  R  I  V  S  K  K  A  V  E  A  G  D  E  G  A  T  S  T  A  P  P  K  G  Q  T  I  N  I  K  D  E  G  S  A  W  K  K  F  G  C  C  S  S  *  G  S  R  K  T  I  A  Q  A  L  Y  I  S  C  K  L  S  L  N  Q  *  F  P  L  P  V  F  S  H  F  G  Y  R  D  C  G  I  *  D  L  F  Y  S  H  E  N  T  *  S  S  A  F  S  *  K  I  P  K  E  D  Q  V  L  L  V  S  N  Y  R  M  S  K  Q  G  L  S  F  M  F  S  G  *  W  L  E  K  L  E  I  S  L  Q  *  P  V  T  E  Y  L  L  I  C  L  E  F  T  S  *  L  F  F  P  F  *  K  C  I  S  *  A  E  *  Q  C  L  L  F  M  I  C  V  V  *  *  I  K  V  E  H  G  K  V  C  P  E  L  I  *  V  D   </second_frame>
            <third_frame>   F  F  S  S  S  K  L  N  L  F  S  E  L  L  L  F  G  Q  S  R  S  E  I  T  E  Q  K  Q  I  *  F  *  R  W  Q  V  T  E  V  M  M  S  M  I  T  F  S  S  L  C  *  *  V  I  Q  V  W  V  N  L  I  C  F  P  G  S  P  K  M  N  S  I  W  S  L  N  Q  L  L  G  L  N  L  Q  P  K  V  L  I  L  M  V  K  L  L  K  L  R  F  G  I  L  L  V  K  K   : G  I  V  P  L  R  V  L  I  I  G  E  L  S  V  L  C  S  Y  M  M  L  L  D  M  L  P  L  K  T  S  T  G  G  *  R  N  *  E  T  I  L  T  L  T  L  *  S  C  S  *  A  T  N  Q  I  S  D  I  S  W  L  F  Q  L  K  R  L  N  L  W  Q  R  G  K  P  Y  T  S  W  K  L  L  H  *  K  R  P  T  L  K  M  R  L  L  K  L  S  R  R  Y  T  G  S  S  V  R  K  Q  S  R  Q  G  T  K  V  L  L  Q  P  H  H  L  K  D  R  R  L  I  S  K  M  K  D  L  L  G  K  S  L  G  A  V  R  A  R  A  H  V  R  Q  *  L  K  L  Y  I  S  V  V  N  C  H  *  I  N  D  F  L  S  L  F  S  L  T  L  G  I  A  I  V  G  Y  K  I  Y  S  I  V  M  R  I  R  E  A  A  R  S  H  E  K  F  R  R  R  I  R  Y  C  *  F  L  I  T  E  C  L  N  K  V  L  V  L  C  F  L  V  D  G  L  K  N  W  R  Y  L  C  N  N  L  L  P  N  I  F  L  F  V  S  N  L  R  L  N  Y  F  S  P  S  K  S  V  F  P  E  L  S  S  N  V  C  C  S  *  Y  V  *  F  D  K  L  K  *  N  M  A  R  C  A  Q  S  *  F  K  W  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11876" stop="11623"/>
                    <exon start="7448" stop="7013"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYRAKADIVLKMAGYRGDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVNRWLKELRDHTDPNIVVMLLGNKSDLRHLVAVSTEEAKSLAEREALYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSTAPPKGQTINIKDEGSAWKKFGCCSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9604" e_stop="8816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="9604" e_stop="8816" e_length="789"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9604" stop="8816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCT</gDNA_template>
            <first_frame> V  M  I  I  R  H  I  K  H  V  N  K  K  E  *  R  S  I  C  E  N  S  N  Y  K  L  S  S  K  L  N  C  H  F  E  I  *  M  F  Y  M  D  S  S  L  I  I  I  I  N  I  R  V  *  V  I  V  M  W  A  W  L  L  H  V  D  T  L  K  I  S  E  K  S  I  S  T  H  T  R  Y  V  C  T  S  *  E  *  *  I  F  G  L  V  R  H  K  L  N  Q  D  A  P  K  A  *  L  E  W  Q  K  V  E  D  L  *  L  R  S  Q  V  Q  A  H  T  M  Q  S  E  A  W  Y  L  S  G  E  G  *  R  G  G  P  I  I  H  R  V  *  K  V  V  I  G  P  K  G  S  G  S  R  I  N  K  *  L  E  V  I  F  V  C  D  T  T  *  S  T  D  K  K  N  *  D  T  T  *  G  N  I  R  T  S  V  G  F  F  S  K  G  G  F  Q  A  I  L  S  H  L  L  R  S  K  S  T  S  I  V  I  R  *  L  S  I  K  A  *  T  N  G  K  M  S  P  Y  I  F  C  L  C  *  D  L  I  P  E  I  P  W  F  *  S  I  S  L  T  L  P  W  L  F  I  T  S </first_frame>
            <second_frame>  *  *  L  *  D  I  *  N  M  L  I  K  R  S  R  E  V  Y  A  K  I  Q  T  T  N  L  V  P  N  *  T  V  I  L  K  Y  R  C  F  T  W  I  L  H  *  S  L  S  S  I  Y  V  F  E  *  L  *  C  G  H  G  Y  F  M  *  I  H  S  K  L  A  K  S  L  *  V  H  I  L  D  T  Y  A  H  H  R  N  N  K  S  L  D  *  L  G  I  N  *  T  K  M  P  P  R  P  S  S  S  G  K  R  W  R  I  C  D  L  G  R  R  F  K  P  T  P  C  K  A  K  P  G  I  *  V  G  K  G  R  G  V  D  P  L  S  T  E  F  R  R  L  *  L  V  Q  R  A  V  G  H  G  *  I  N  N  W  K  S  Y  L  Y  V  I  Q  L  K  V  L  T  K  R  I  E  I  Q  L  K  V  T  F  E  L  L  *  D  F  L  V  K  V  V  F  R  P  F  *  A  T  C  Y  V  L  N  P  P  V  *  L  S  G  N  C  L  S  K  L  R  Q  M  G  R  C  H  P  T  F  F  A  Y  A  R  T  *  S  Q  K  S  H  G  F  N  L  F  H  *  H  Y  P  G  F  L  *  L   </second_frame>
            <third_frame>   D  D  Y  K  T  Y  K  T  C  *  *  K  G  V  E  K  Y  M  R  K  F  K  L  Q  T  *  F  Q  T  K  L  S  F  *  N  I  D  V  L  H  G  F  F  I  N  H  Y  H  Q  Y  T  C  L  S  D  C  D  V  G  M  V  T  S  C  R  Y  T  Q  N  *  R  K  V  Y  K  Y  T  Y  *  I  R  M  H  I  I  G  I  I  N  L  W  I  S  *  A  *  T  K  P  R  C  P  Q  G  L  A  R  V  A  K  G  G  G  F  V  T  *  V  A  G  S  S  P  H  H  A  K  R  S  L  V  F  K  W  G  R  V  E  G  W  T  H  Y  P  P  S  L  E  G  C  D  W  S  K  G  Q  W  V  T  D  K  *  I  I  G  S  H  I  C  M  *  Y  N  L  K  Y  *  Q  K  E  L  R  Y  N  L  R  *  H  S  N  F  C  R  I  F  *  *  R  W  F  S  G  H  F  E  P  P  V  T  F  *  I  H  Q  Y  S  Y  P  V  T  V  Y  Q  S  L  D  K  W  E  D  V  T  L  H  F  L  P  M  L  G  L  D  P  R  N  P  M  V  L  I  Y  F  I  D  T  T  L  A  F  Y  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0020F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="11270" e_stop="11255"/>
            <exon e_start="10907" e_stop="10302"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.879" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.625">
            <gDNA_exon_boundary e_start="11270" e_stop="11255" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.879" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11254" i_stop="10908" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="10907" e_stop="10302" e_length="606"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11270" stop="11255"/>
              <exon start="10907" stop="10302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGACCATTGGCTCAA : TATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTG</gDNA_template>
            <first_frame> R  T  I  G  S   : I  L  S  G  C  F  L  C  V  W  D  L  D  E  *  E  V  L  V  G  L  L  V  *  S  Y  F  W  *  G  S  S  N  D  V  V  F  I  G  I  F  *  E  C  L  D  V  L  L  L  L  D  W  D  F  L  S  L  G  V  V  S  V  F  L  I  E  I  R  G  T  W  S  A  Y  C  N  Q  L  Y  I  K  K  K  E  E  Y  F  S  V  F  G  S  *  K  R  I  S  *  E  H  F  E  D  V  M  K  *  I  K  V  C  C  P  N  G  L  L  D  E  M  I  I  Q  F  N  I  C  A  G  Y  V  C  S  *  L  F  R  C  Y  C  D  V  N  L  K  A  N  Y  R  N  C  S  I  Q  I  C  C  F  K  I  I  *  T  Y  S  V  P  A  R  V  H  W  Q  V  C  F  F  *  Y  E  K  *  L  T  K  V  T  Q  Y  F  L  I  I  F  E  I  L  S  Y  F  I  </first_frame>
            <second_frame>  G  P  L  A  Q  :  Y  *  V  V  V  F  C  V  F  G  I  *  M  S  E  K  C  L  W  V  C  W  F  N  L  I  F  G  K  V  L  Q  M  M  L  C  L  L  V  F  S  K  S  V  *  M  C  C  C  C  L  I  G  I  S  C  L  W  V  W  Y  L  C  S  *  L  K  F  E  G  H  G  V  L  T  A  T  N  Y  I  *  K  K  K  K  N  I  F  P  C  L  V  H  E  K  E  Y  R  E  S  I  L  K  T  *  *  S  K  S  K  C  V  A  P  M  D  F  *  M  R  *  S  Y  N  S  T  F  V  Q  A  M  C  A  P  S  C  L  D  A  I  V  M  S  I  *  K  L  I  I  E  I  V  V  S  K  F  V  V  L  K  L  F  E  L  I  Q  F  P  H  E  Y  I  G  R  Y  V  F  S  N  M  K  N  N  *  P  K  *  L  N  I  S  S  *  F  L  K  S  L  A  I  L  L </second_frame>
            <third_frame>   D  H  W  L  N :   I  K  W  L  F  F  V  C  L  G  F  R  *  V  R  S  A  C  G  F  V  G  L  I  L  F  L  V  R  F  F  K  *  C  C  V  Y  W  Y  F  L  R  V  S  R  C  A  V  V  A  *  L  G  F  L  V  F  G  C  G  I  C  V  P  N  *  N  S  R  D  M  E  C  L  L  Q  P  I  I  Y  K  K  K  R  R  I  F  F  R  V  W  F  M  K  K  N  I  V  R  A  F  *  R  R  N  E  V  N  Q  S  V  L  P  Q  W  T  F  R  *  D  D  H  T  I  Q  H  L  C  R  L  C  V  L  L  V  V  *  M  L  L  *  C  Q  S  E  S  *  L  *  K  L  *  Y  P  N  L  L  F  *  N  Y  L  N  L  F  S  S  R  T  S  T  L  A  G  M  F  F  L  I  *  K  I  I  D  Q  S  N  S  I  F  P  H  N  F  *  N  P  *  L  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0020F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="20919" PGL_stop="23649"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20919" e_stop="20955"/>
            <exon e_start="23139" e_stop="23649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20919" e_stop="20955" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20956" i_stop="23138" i_length="2183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23139" e_stop="23649" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20919" stop="20955"/>
              <exon start="23139" stop="23649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333424" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAGCGGTCAGCACATTGTGGAAGTAAAGCCTCAG : GGGGTCACCAAAGGTTTAGTTGCAGAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTG</gDNA_template>
            <first_frame> E  K  R  S  A  H  C  G  S  K  A  S   : G  G  H  Q  R  F  S  C  R  K  S  L  Y  I  F  S  G  E  R  K  T  G  G  F  C  A  L  H  W  *  *  *  I  R  *  R  Y  V  *  N  H  W  R  C  F  V  Q  K  Y  Y  F  I  *  C  Q  G  I  C  L  H  S  W  T  K  T  *  Q  S  K  V  L  L  G  *  H  I  *  G  G  A  Y  A  R  L  P  C  *  C  H  *  Y  S  S  D  F  *  *  R  *  T  C  G  L  R  L  N  V  A  T  R  C  F  V  C  F  G  Y  L  L  Y  *  M  Y  I  P  G  L  K  M  A  H  C  P  F  E  F  G  F  E  V  *  D  G  G  I  S  N  S  V  Q  S  F  F  P  F  *  L  F  Y  S  F  I  I  S  L  Y  V  I  Y  L   </first_frame>
            <second_frame>  K  S  G  Q  H  I  V  E  V  K  P  Q  :  G  V  T  K  G  L  V  A  E  K  V  F  T  S  L  A  E  K  G  K  L  A  D  F  V  L  C  I  G  D  D  R  S  D  E  D  M  F  E  I  I  G  D  A  L  S  R  N  I  I  S  Y  D  A  K  V  F  A  C  T  V  G  Q  K  P  S  K  A  K  Y  Y  L  D  D  T  S  E  V  V  L  M  L  D  S  L  A  D  A  T  D  T  P  V  T  S  D  D  D  E  P  A  D  S  D  *  M  *  L  P  D  V  L  F  A  S  V  T  F  S  I  E  C  I  F  Q  V  *  R  W  H  I  V  H  L  S  S  V  S  R  F  K  T  V  E  S  Q  I  L  F  N  H  S  F  L  S  D  C  S  I  L  L  S  L  A  C  M  *  Y  I  S  </second_frame>
            <third_frame>   K  A  V  S  T  L  W  K  *  S  L  R :   G  S  P  K  V  *  L  Q  K  K  S  L  H  L  *  R  R  K  E  N  W  R  I  L  C  F  A  L  V  M  I  D  Q  M  K  I  C  L  K  S  L  A  M  L  C  P  E  I  L  F  H  M  M  P  R  Y  L  L  A  Q  L  D  K  N  L  A  K  Q  S  I  T  W  M  T  H  L  R  W  C  L  C  *  T  P  L  L  M  P  L  I  L  Q  *  L  L  M  T  M  N  L  R  T  P  T  E  C  S  Y  Q  M  F  C  L  L  R  L  P  S  L  L  N  V  Y  S  R  S  E  D  G  T  L  S  I  *  V  R  F  R  G  L  R  R  W  N  L  K  F  C  S  I  I  L  S  F  L  I  V  L  F  F  Y  H  *  P  V  C  N  I  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20920" stop="20955"/>
                    <exon start="23139" stop="23453"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSGQHIVEVKPQGVTKGLVAEKVFTSLAEKGKLADFVLCIGDDRSDEDMFEIIGDALSRNIISYDAKVFACTVGQKPSKAKYYLDDTSEVVLMLDSLADATDTPVTSDDDEPADSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="30983" PGL_stop="26938"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30983" e_stop="30951"/>
            <exon e_start="29863" e_stop="28650"/>
            <exon e_start="28575" e_stop="28262"/>
            <exon e_start="28083" e_stop="27843"/>
            <exon e_start="27449" e_stop="26938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.540" e_score="0.939"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="30983" e_stop="30951" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.540">
            <gDNA_intron_boundary i_start="30950" i_stop="29864" i_length="1087"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29863" e_stop="28650" e_length="1214"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28649" i_stop="28576" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28575" e_stop="28262" e_length="314"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.974">
            <gDNA_intron_boundary i_start="28261" i_stop="28084" i_length="178"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28083" e_stop="27843" e_length="241"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27842" i_stop="27450" i_length="393"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27449" e_stop="26938" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30983" stop="30951"/>
              <exon start="29863" stop="28650"/>
              <exon start="28575" stop="28262"/>
              <exon start="28083" stop="27843"/>
              <exon start="27449" stop="26938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGGAGTTATCTTTCCTCTGTCAACTTTATCAG : GTTCTTGCTTCTTTTCTGAGCGTATCAACATGGCGACTTCATCAGTATGCATAGCAGGAAATGATTTGTCCACCCATAGAACACAGAAAGTTTTTAGGAAGGAGATCTATGGCAGAAAAATTTTGTACTCCTCAAATCTTCCATCATCTAGGAAAACATCAAGAGTAGTTGTAAAAGCATCCCTTCAGCAAGGGCCACATGAAGGAAGAAGAGGCTTTCTTAAATTATTGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAGGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAA : GTATCCGTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTCAATTGATAGGATAGTGGCTGGTATGGAAGGAACAGTCATGACTGATGGCAAGAGCAAGAGTCTGGTGGCATATCACGAAGTTGGACATGCCATCTGTGG : AACTCTCACTCCAGGGCATGATGCTGTACAAAAGGTCACTCTAATCCCACGTGGTCAGGCAAAAGGTTTGACCTGGTTCATTCCTGCAGATGACCCAACCTTAATATCCAAGCAACAACTCTTTGCTAGAATTGTTGGTGGACTTGGTGGAAGAGCTGCAGAAGAAGTGATCTTTGGTGAACCTGAAGTGACCACTGGTGCTGCTGGTGATTTGCAGCAGATCACTGGTTTGGCAAAACAG : ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTA</gDNA_template>
            <first_frame> T  E  L  S  F  L  C  Q  L  Y  Q  :  V  L  A  S  F  L  S  V  S  T  W  R  L  H  Q  Y  A  *  Q  E  M  I  C  P  P  I  E  H  R  K  F  L  G  R  R  S  M  A  E  K  F  C  T  P  Q  I  F  H  H  L  G  K  H  Q  E  *  L  *  K  H  P  F  S  K  G  H  M  K  E  E  E  A  F  L  N  Y  C  L  E  M  L  G  L  E  C  L  L  C  *  V  M  G  K  P  M  L  M  S  K  V  F  L  T  Q  G  C  L  I  L  D  F  W  S  I  W  T  R  T  G  C  K  K  *  I  C  L  K  M  E  P  *  L  L  *  K  L  Y  L  Q  N  W  G  T  E  C  K  E  L  G  Y  N  Y  L  D  S  A  R  N  S  F  K  S  S  G  K  R  T  L  I  S  L  L  T  M  L  K  R  T  Q  V  L  S  Y  S  T  *  L  E  I  W  L  S  H  L  F  *  L  V  V  F  S  C  Y  Q  G  G  L  T  E  E  W  E  V  L  V  G  L  E  T  H  *  H  L  V  N  Q  R  L  S  S  K  W  S  Q  T  L  V  *  H  L  M  M  L  L  V  *  M  K  Q  N  K  I  L  W  R  S  *  N  F  *  R  N  L  R  D  L  L  Q  *  G  L  V  F  Q  K  V  F  F  L  L  V  L  L  V  L  G  K  P  C  *  Q  R  Q  L  L  V  K  R  V  F  H  F  S  Q  F  Q  V  Q  N  S  L  R  C  L  L  V  L  E  P  L  E  S  V  I  F  S  R  R  P  R  K  M  L  L  A  L  Y  L  L  M  K  L  M  L  L  G  G  K  E  G  L  E  L  E  E  E  M  M  K  G  N  R  P  *  T  N  Y  *  L  K  W  M  V  S  K  E  I  L  V  *  *  L  L  R  Q  P  I  V  Q  I  F  L  T  L  L  C  *  G  Q  D  D  L  I  D  K :   Y  P  W  M  S  Q  T  S  R  E  E  Q  R  S  *  R  F  M  P  A  T  R  S  L  I  Q  M  C  L  L  K  L  L  P  *  G  H  R  V  S  V  E  Q  I  L  L  T  S  *  M  K  Q  P  F  L  Q  V  D  V  V  R  Q  Q  S  H  P  K  R  L  M  I  Q  L  I  G  *  W  L  V  W  K  E  Q  S  *  L  M  A  R  A  R  V  W  W  H  I  T  K  L  D  M  P  S  V   : E  L  S  L  Q  G  M  M  L  Y  K  R  S  L  *  S  H  V  V  R  Q  K  V  *  P  G  S  F  L  Q  M  T  Q  P  *  Y  P  S  N  N  S  L  L  E  L  L  V  D  L  V  E  E  L  Q  K  K  *  S  L  V  N  L  K  *  P  L  V  L  L  V  I  C  S  R  S  L  V  W  Q  N  R :   W  L  S  L  L  V  C  L  N  L  A  R  G  P  S  W  I  L  Q  P  K  V  V  M  *  S  *  E  *  W  P  G  T  R  C  Q  K  S  *  L  K  T  L  M  L  L  *  R  S  F  Q  T  V  H  M  R  L  H  *  A  K  S  A  A  T  V  K  Q  L  I  R  L  W  K  S  S  L  K  R  R  R  *  L  E  M  N  S  V  L  F  S  Q  N  L  L  K  F  L  L  K  T  A  S  L  L  L  F  L  P  Q  Q  L  Y  N  S  L  N  I  Y  C  N  L  Y  N  S  H  T  L  I  P  L  I  *  S  R  V  *  T  I  Y  R  L  *  E  S  *  K  T  L  L  C  I  C  V  *  S  K  F  S  H  L  I  *  N  *  S  F  L  H  C  </first_frame>
            <second_frame>  R  S  Y  L  S  S  V  N  F  I  R :   F  L  L  L  F  *  A  Y  Q  H  G  D  F  I  S  M  H  S  R  K  *  F  V  H  P  *  N  T  E  S  F  *  E  G  D  L  W  Q  K  N  F  V  L  L  K  S  S  I  I  *  E  N  I  K  S  S  C  K  S  I  P  S  A  R  A  T  *  R  K  K  R  L  S  *  I  I  A  W  K  C  W  A  W  S  A  C  F  V  R  *  W  E  S  L  C  *  *  A  R  C  F  *  L  K  D  V  L  F  *  I  F  G  V  S  G  Q  G  Q  G  A  K  S  R  S  V  *  K  W  N  H  S  Y  C  R  S  C  I  S  R  I  G  E  P  S  A  K  S  *  G  T  T  T  W  T  Q  P  G  T  P  S  K  V  P  G  K  E  H  *  F  R  C  S  Q  C  S  R  G  L  R  F  S  H  I  Q  L  D  W  K  S  G  F  P  T  Y  F  D  W  W  S  F  P  A  I  K  A  V  *  R  R  N  G  R  S  W  W  A  W  K  P  T  S  I  W  S  I  K  G  *  V  P  N  G  A  K  H  W  C  D  I  *  *  C  C  W  C  R  *  S  K  T  R  F  Y  G  G  R  R  I  F  E  E  T  *  E  I  Y  C  S  R  G  S  Y  S  K  R  C  S  S  C  W  S  S  W  Y  W  E  N  L  A  S  K  G  N  C  W  *  S  G  C  S  I  F  L  N  F  R  F  R  I  R  *  D  V  C  W  C  W  S  L  S  S  P  *  S  F  Q  E  G  Q  G  K  C  S  L  H  C  I  C  *  *  N  *  C  C  W  A  A  K  R  D  W  N  W  R  R  K  *  *  K  G  T  D  P  E  P  T  I  D  *  N  G  W  F  R  R  K  Y  W  Y  N  S  C  C  G  N  Q  S  C  R  Y  S  *  L  C  F  A  E  A  R  T  I  *  *  T   : S  I  R  G  C  P  R  H  Q  G  K  N  R  D  L  K  G  S  C  R  Q  Q  E  V  *  F  R  C  V  S  *  S  Y  C  H  E  D  T  G  F  Q  W  S  R  S  C  *  P  L  K  *  S  S  H  S  C  R  S  T  W  *  D  S  N  R  I  Q  R  D  *  *  F  N  *  *  D  S  G  W  Y  G  R  N  S  H  D  *  W  Q  E  Q  E  S  G  G  I  S  R  S  W  T  C  H  L  W  :  N  S  H  S  R  A  *  C  C  T  K  G  H  S  N  P  T  W  S  G  K  R  F  D  L  V  H  S  C  R  *  P  N  L  N  I  Q  A  T  T  L  C  *  N  C  W  W  T  W  W  K  S  C  R  R  S  D  L  W  *  T  *  S  D  H  W  C  C  W  *  F  A  A  D  H  W  F  G  K  T   : D  G  C  H  F  W  Y  V  *  T  W  P  V  V  P  H  G  F  F  S  P  K  W  *  C  N  H  E  N  D  G  Q  E  L  D  V  R  K  A  S  *  R  H  *  C  C  C  E  E  A  F  R  Q  C  I  *  D  C  I  E  P  N  P  Q  Q  P  *  S  N  *  *  D  C  G  S  P  P  *  K  G  D  D  D  W  R  *  I  P  C  Y  S  L  R  I  C  *  N  S  C  *  K  P  R  P  C  C  C  S  Y  P  S  S  C  I  I  A  *  T  Y  T  A  T  C  T  I  H  I  H  L  S  P  *  F  D  L  E  Y  K  Q  Y  I  D  Y  K  K  V  K  K  H  F  C  A  F  V  Y  E  A  N  F  H  I  *  Y  R  T  S  L  F  F  T  V </second_frame>
            <third_frame>   G  V  I  F  P  L  S  T  L  S   : G  S  C  F  F  S  E  R  I  N  M  A  T  S  S  V  C  I  A  G  N  D  L  S  T  H  R  T  Q  K  V  F  R  K  E  I  Y  G  R  K  I  L  Y  S  S  N  L  P  S  S  R  K  T  S  R  V  V  V  K  A  S  L  Q  Q  G  P  H  E  G  R  R  G  F  L  K  L  L  L  G  N  V  G  L  G  V  P  A  L  L  G  N  G  K  A  Y  A  D  E  Q  G  V  S  N  S  R  M  S  Y  S  R  F  L  E  Y  L  D  K  D  R  V  Q  K  V  D  L  F  E  N  G  T  I  A  I  V  E  A  V  S  P  E  L  G  N  R  V  Q  R  V  R  V  Q  L  P  G  L  S  Q  E  L  L  Q  K  F  R  E  K  N  I  D  F  A  A  H  N  A  Q  E  D  S  G  S  L  I  F  N  L  I  G  N  L  A  F  P  L  I  L  I  G  G  L  F  L  L  S  R  R  S  N  G  G  M  G  G  P  G  G  P  G  N  P  L  A  F  G  Q  S  K  A  K  F  Q  M  E  P  N  T  G  V  T  F  D  D  V  A  G  V  D  E  A  K  Q  D  F  M  E  V  V  E  F  L  K  K  P  E  R  F  T  A  V  G  A  R  I  P  K  G  V  L  L  V  G  P  P  G  T  G  K  T  L  L  A  K  A  I  A  G  E  A  G  V  P  F  F  S  I  S  G  S  E  F  V  E  M  F  V  G  V  G  A  S  R  V  R  D  L  F  K  K  A  K  E  N  A  P  C  I  V  F  V  D  E  I  D  A  V  G  R  Q  R  G  T  G  I  G  G  G  N  D  E  R  E  Q  T  L  N  Q  L  L  T  E  M  D  G  F  E  G  N  T  G  I  I  V  V  A  A  T  N  R  A  D  I  L  D  S  A  L  L  R  P  G  R  F  D  R  Q  :  V  S  V  D  V  P  D  I  K  G  R  T  E  I  L  K  V  H  A  G  N  K  K  F  D  S  D  V  S  L  E  V  I  A  M  R  T  P  G  F  S  G  A  D  L  A  N  L  L  N  E  A  A  I  L  A  G  R  R  G  K  T  A  I  A  S  K  E  I  D  D  S  I  D  R  I  V  A  G  M  E  G  T  V  M  T  D  G  K  S  K  S  L  V  A  Y  H  E  V  G  H  A  I  C  G :   T  L  T  P  G  H  D  A  V  Q  K  V  T  L  I  P  R  G  Q  A  K  G  L  T  W  F  I  P  A  D  D  P  T  L  I  S  K  Q  Q  L  F  A  R  I  V  G  G  L  G  G  R  A  A  E  E  V  I  F  G  E  P  E  V  T  T  G  A  A  G  D  L  Q  Q  I  T  G  L  A  K  Q  :  M  V  V  T  F  G  M  S  E  L  G  P  W  S  L  M  D  S  S  A  Q  S  G  D  V  I  M  R  M  M  A  R  N  S  M  S  E  K  L  A  E  D  I  D  V  A  V  K  K  L  S  D  S  A  Y  E  I  A  L  S  Q  I  R  S  N  R  E  A  I  D  K  I  V  E  V  L  L  E  K  E  T  M  T  G  D  E  F  R  A  I  L  S  E  F  V  E  I  P  A  E  N  R  V  P  A  A  V  P  T  P  A  A  V  *  *  L  E  H  I  L  Q  L  V  Q  F  T  Y  T  Y  P  P  N  L  I  *  S  I  N  N  I  *  T  I  R  K  L  K  N  T  F  V  H  L  C  M  K  Q  I  F  T  F  D  I  E  L  V  F  S  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30981" stop="30951"/>
                    <exon start="29863" stop="28650"/>
                    <exon start="28575" stop="28262"/>
                    <exon start="28083" stop="27843"/>
                    <exon start="27449" stop="27108"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2139</number_coding_nucleotides>
                  <number_encoded_amino_acids>713</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVIFPLSTLSGSCFFSERINMATSSVCIAGNDLSTHRTQKVFRKEIYGRKILYSSNLPSSRKTSRVVVKASLQQGPHEGRRGFLKLLLGNVGLGVPALLGNGKAYADEQGVSNSRMSYSRFLEYLDKDRVQKVDLFENGTIAIVEAVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLIFNLIGNLAFPLILIGGLFLLSRRSNGGMGGPGGPGNPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPGRFDRQVSVDVPDIKGRTEILKVHAGNKKFDSDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAIASKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQAKGLTWFIPADDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSELGPWSLMDSSAQSGDVIMRMMARNSMSEKLAEDIDVAVKKLSDSAYEIALSQIRSNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVPAAVPTPAAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29496" e_stop="29166"/>
            <exon e_start="28909" e_stop="28650"/>
            <exon e_start="28575" e_stop="28314"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="29496" e_stop="29166" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29165" i_stop="28910" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28909" e_stop="28650" e_length="260"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28649" i_stop="28576" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28575" e_stop="28314" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29496" stop="29166"/>
              <exon start="28909" stop="28650"/>
              <exon start="28575" stop="28314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334675" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAG : CCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAA : GTATCCGTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTCAATTGATAGGATAGTGGCTGGTATGGAAGGAACAGTCATGACTGATG</gDNA_template>
            <first_frame> R  S  V  *  K  W  N  H  S  Y  C  R  S  C  I  S  R  I  G  E  P  S  A  K  S  *  G  T  T  T  W  T  Q  P  G  T  P  S  K  V  P  G  K  E  H  *  F  R  C  S  Q  C  S  R  G  L  R  F  S  H  I  Q  L  D  W  K  S  G  F  P  T  Y  F  D  W  W  S  F  P  A  I  K  A  V  *  R  R  N  G  R  S  W  W  A  W  K  P  T  S  I  W  S  I  K  G  *  V  P  N  G   : A  S  R  V  R  D  L  F  K  K  A  K  E  N  A  P  C  I  V  F  V  D  E  I  D  A  V  G  R  Q  R  G  T  G  I  G  G  G  N  D  E  R  E  Q  T  L  N  Q  L  L  T  E  M  D  G  F  E  G  N  T  G  I  I  V  V  A  A  T  N  R  A  D  I  L  D  S  A  L  L  R  P  G  R  F  D  R  Q  :  V  S  V  D  V  P  D  I  K  G  R  T  E  I  L  K  V  H  A  G  N  K  K  F  D  S  D  V  S  L  E  V  I  A  M  R  T  P  G  F  S  G  A  D  L  A  N  L  L  N  E  A  A  I  L  A  G  R  R  G  K  T  A  I  A  S  K  E  I  D  D  S  I  D  R  I  V  A  G  M  E  G  T  V  M  T  D  </first_frame>
            <second_frame>  D  L  F  E  N  G  T  I  A  I  V  E  A  V  S  P  E  L  G  N  R  V  Q  R  V  R  V  Q  L  P  G  L  S  Q  E  L  L  Q  K  F  R  E  K  N  I  D  F  A  A  H  N  A  Q  E  D  S  G  S  L  I  F  N  L  I  G  N  L  A  F  P  L  I  L  I  G  G  L  F  L  L  S  R  R  S  N  G  G  M  G  G  P  G  G  P  G  N  P  L  A  F  G  Q  S  K  A  K  F  Q  M  E  :  P  L  E  S  V  I  F  S  R  R  P  R  K  M  L  L  A  L  Y  L  L  M  K  L  M  L  L  G  G  K  E  G  L  E  L  E  E  E  M  M  K  G  N  R  P  *  T  N  Y  *  L  K  W  M  V  S  K  E  I  L  V  *  *  L  L  R  Q  P  I  V  Q  I  F  L  T  L  L  C  *  G  Q  D  D  L  I  D  K :   Y  P  W  M  S  Q  T  S  R  E  E  Q  R  S  *  R  F  M  P  A  T  R  S  L  I  Q  M  C  L  L  K  L  L  P  *  G  H  R  V  S  V  E  Q  I  L  L  T  S  *  M  K  Q  P  F  L  Q  V  D  V  V  R  Q  Q  S  H  P  K  R  L  M  I  Q  L  I  G  *  W  L  V  W  K  E  Q  S  *  L  M </second_frame>
            <third_frame>   I  C  L  K  M  E  P  *  L  L  *  K  L  Y  L  Q  N  W  G  T  E  C  K  E  L  G  Y  N  Y  L  D  S  A  R  N  S  F  K  S  S  G  K  R  T  L  I  S  L  L  T  M  L  K  R  T  Q  V  L  S  Y  S  T  *  L  E  I  W  L  S  H  L  F  *  L  V  V  F  S  C  Y  Q  G  G  L  T  E  E  W  E  V  L  V  G  L  E  T  H  *  H  L  V  N  Q  R  L  S  S  K  W  S :   L  S  S  P  *  S  F  Q  E  G  Q  G  K  C  S  L  H  C  I  C  *  *  N  *  C  C  W  A  A  K  R  D  W  N  W  R  R  K  *  *  K  G  T  D  P  E  P  T  I  D  *  N  G  W  F  R  R  K  Y  W  Y  N  S  C  C  G  N  Q  S  C  R  Y  S  *  L  C  F  A  E  A  R  T  I  *  *  T   : S  I  R  G  C  P  R  H  Q  G  K  N  R  D  L  K  G  S  C  R  Q  Q  E  V  *  F  R  C  V  S  *  S  Y  C  H  E  D  T  G  F  Q  W  S  R  S  C  *  P  L  K  *  S  S  H  S  C  R  S  T  W  *  D  S  N  R  I  Q  R  D  *  *  F  N  *  *  D  S  G  W  Y  G  R  N  S  H  D  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29178" stop="29166"/>
                    <exon start="28909" stop="28650"/>
                    <exon start="28575" stop="28315"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPNGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPGRFDRQVSVDVPDIKGRTEILKVHAGNKKFDSDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAIASKEIDDSIDRIVAGMEGTVMTD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29495" stop="29166"/>
                    <exon start="28909" stop="28772"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLFENGTIAIVEAVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLIFNLIGNLAFPLILIGGLFLLSRRSNGGMGGPGGPGNPLAFGQSKAKFQMEPLESVIFSRRPRKMLLALYLLMKLMLLGGKEGLELEEEMMKGNRP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="33593" PGL_stop="32674"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33593" e_stop="33432"/>
            <exon e_start="33340" e_stop="33264"/>
            <exon e_start="33187" e_stop="32674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.883" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33593" e_stop="33432" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33431" i_stop="33341" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33340" e_stop="33264" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.883">
            <gDNA_intron_boundary i_start="33263" i_stop="33188" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="33187" e_stop="32674" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33593" stop="33432"/>
              <exon start="33340" stop="33264"/>
              <exon start="33187" stop="32674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346968" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACAGAAAAATTTACAAACATGAACAGCAACAGGCCTCATAATTTTACACAACATGGAAATTGGAGCAATGGAGAGTGGCATGATCCTAATTCACATGGACCTGAGTACATATGGCAACCTATTATCCCTCGTCCTCCGCCTCCACGAGATATCCCTCAG : AATCCTAGACGTGTCGTTCATGATCCACCGTTGCAAGTAACAGAGAGACCATTTCTAGTACCTACTGGTGCAACAAG : TTATCCATATCCAGGCCAACCACGACGTAGGCTAACTCATCCTCCTGTTCGCGTTCTACTCCATAACGATGATGTACCAAGACATGGATCATATCAGAGACCAAGCCAACTTCCATTCGATTCTCCTCCTCCTCCGTGGTTTATGCAGAGCAATGAAACGTCGAGGAATGAATCAAAATTGAGCCCAAATGAGCAAAAGGCAGCCTTAAATAAACTCAAGAAAGAAATCTACAATCCTGTACAAGCAAAAGTGGCAAAACAAGTGAACCTTTACTTTAGAGGCTTGAACAATACTACCACCAACGAATCGATCAAGGACAAAGATGAGGATGGTAAAAGATGTTCGATTTGCTTGGAAGATTTCGAGCCTAAAGAGATTGTGACAGTCACACCATGTAGTCATATGTTCCACGAAGACTGCATCGTTCCATGGGTGACAAATCATGGCTCGTGCCCTGTCTGTCGATTTGCTATCTGTGAAAGAATGAAACAGGACACAACAGACTCATCGACG</gDNA_template>
            <first_frame> N  T  E  K  F  T  N  M  N  S  N  R  P  H  N  F  T  Q  H  G  N  W  S  N  G  E  W  H  D  P  N  S  H  G  P  E  Y  I  W  Q  P  I  I  P  R  P  P  P  P  R  D  I  P  Q  :  N  P  R  R  V  V  H  D  P  P  L  Q  V  T  E  R  P  F  L  V  P  T  G  A  T  S :   Y  P  Y  P  G  Q  P  R  R  R  L  T  H  P  P  V  R  V  L  L  H  N  D  D  V  P  R  H  G  S  Y  Q  R  P  S  Q  L  P  F  D  S  P  P  P  P  W  F  M  Q  S  N  E  T  S  R  N  E  S  K  L  S  P  N  E  Q  K  A  A  L  N  K  L  K  K  E  I  Y  N  P  V  Q  A  K  V  A  K  Q  V  N  L  Y  F  R  G  L  N  N  T  T  T  N  E  S  I  K  D  K  D  E  D  G  K  R  C  S  I  C  L  E  D  F  E  P  K  E  I  V  T  V  T  P  C  S  H  M  F  H  E  D  C  I  V  P  W  V  T  N  H  G  S  C  P  V  C  R  F  A  I  C  E  R  M  K  Q  D  T  T  D  S  S  T </first_frame>
            <second_frame>  T  Q  K  N  L  Q  T  *  T  A  T  G  L  I  I  L  H  N  M  E  I  G  A  M  E  S  G  M  I  L  I  H  M  D  L  S  T  Y  G  N  L  L  S  L  V  L  R  L  H  E  I  S  L  R :   I  L  D  V  S  F  M  I  H  R  C  K  *  Q  R  D  H  F  *  Y  L  L  V  Q  Q   : V  I  H  I  Q  A  N  H  D  V  G  *  L  I  L  L  F  A  F  Y  S  I  T  M  M  Y  Q  D  M  D  H  I  R  D  Q  A  N  F  H  S  I  L  L  L  L  R  G  L  C  R  A  M  K  R  R  G  M  N  Q  N  *  A  Q  M  S  K  R  Q  P  *  I  N  S  R  K  K  S  T  I  L  Y  K  Q  K  W  Q  N  K  *  T  F  T  L  E  A  *  T  I  L  P  P  T  N  R  S  R  T  K  M  R  M  V  K  D  V  R  F  A  W  K  I  S  S  L  K  R  L  *  Q  S  H  H  V  V  I  C  S  T  K  T  A  S  F  H  G  *  Q  I  M  A  R  A  L  S  V  D  L  L  S  V  K  E  *  N  R  T  Q  Q  T  H  R   </second_frame>
            <third_frame>   H  R  K  I  Y  K  H  E  Q  Q  Q  A  S  *  F  Y  T  T  W  K  L  E  Q  W  R  V  A  *  S  *  F  T  W  T  *  V  H  M  A  T  Y  Y  P  S  S  S  A  S  T  R  Y  P  S   : E  S  *  T  C  R  S  *  S  T  V  A  S  N  R  E  T  I  S  S  T  Y  W  C  N  K  :  L  S  I  S  R  P  T  T  T  *  A  N  S  S  S  C  S  R  S  T  P  *  R  *  C  T  K  T  W  I  I  S  E  T  K  P  T  S  I  R  F  S  S  S  S  V  V  Y  A  E  Q  *  N  V  E  E  *  I  K  I  E  P  K  *  A  K  G  S  L  K  *  T  Q  E  R  N  L  Q  S  C  T  S  K  S  G  K  T  S  E  P  L  L  *  R  L  E  Q  Y  Y  H  Q  R  I  D  Q  G  Q  R  *  G  W  *  K  M  F  D  L  L  G  R  F  R  A  *  R  D  C  D  S  H  T  M  *  S  Y  V  P  R  R  L  H  R  S  M  G  D  K  S  W  L  V  P  C  L  S  I  C  Y  L  *  K  N  E  T  G  H  N  R  L  I  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33593" stop="33432"/>
                    <exon start="33340" stop="33264"/>
                    <exon start="33187" stop="32674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTEKFTNMNSNRPHNFTQHGNWSNGEWHDPNSHGPEYIWQPIIPRPPPPRDIPQNPRRVVHDPPLQVTERPFLVPTGATSYPYPGQPRRRLTHPPVRVLLHNDDVPRHGSYQRPSQLPFDSPPPPWFMQSNETSRNESKLSPNEQKAALNKLKKEIYNPVQAKVAKQVNLYFRGLNNTTTNESIKDKDEDGKRCSICLEDFEPKEIVTVTPCSHMFHEDCIVPWVTNHGSCPVCRFAICERMKQDTTDSST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="38889" PGL_stop="34160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38889" e_stop="38591"/>
            <exon e_start="36157" e_stop="36002"/>
            <exon e_start="35878" e_stop="35746"/>
            <exon e_start="35657" e_stop="35618"/>
            <exon e_start="35405" e_stop="35286"/>
            <exon e_start="35206" e_stop="34888"/>
            <exon e_start="34566" e_stop="34561"/>
            <exon e_start="34175" e_stop="34160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.674" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.535" acc_prob="0.911" e_score="0.833"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38889" e_stop="38591" e_length="299"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38590" i_stop="36158" i_length="2433"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36157" e_stop="36002" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="36001" i_stop="35879" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35878" e_stop="35746" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.674">
            <gDNA_intron_boundary i_start="35745" i_stop="35658" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35657" e_stop="35618" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.862">
            <gDNA_intron_boundary i_start="35617" i_stop="35406" i_length="212"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35405" e_stop="35286" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.898" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35285" i_stop="35207" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35206" e_stop="34888" e_length="319"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34887" i_stop="34567" i_length="321"/>
          </intron>
          <exon e_serial="7" e_score="0.833">
            <gDNA_exon_boundary e_start="34566" e_stop="34561" e_length="6"/>
          </exon>
          <intron i_serial="7" don_prob="0.535" acc_prob="0.911">
            <gDNA_intron_boundary i_start="34560" i_stop="34176" i_length="385"/>
          </intron>
          <exon e_serial="8" e_score="0.562">
            <gDNA_exon_boundary e_start="34175" e_stop="34160" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38889" stop="38591"/>
              <exon start="36157" stop="36002"/>
              <exon start="35878" stop="35746"/>
              <exon start="35657" stop="35618"/>
              <exon start="35405" stop="35286"/>
              <exon start="35206" stop="34888"/>
              <exon start="34566" stop="34561"/>
              <exon start="34175" stop="34160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAGAGAGGAACAAAAAAACAAGAATGGGTTCATTGAGTGGTGGAAATGGAAGTATATGGGGAATGGGATTTTTCCATTCTCAAGAATGGAATTCTGGAAGAAGAAGAAGGAGAAGTAATGGTGGAAAATCGTCAAATTCGGATTCAGTGGATGCAAATGGTGGAGCTGGTTATCGTTTTCCTCTGAAGCAAGCTATGACGGCTAGCTCTCTTGCACTTAGTGGTGACACCATTGCTCAGCTTCGTGACCGGTGGCTCAAGAACAAAGATAATCTTCCTGATCCATCTCATCCTAAG : GATATGATTGGTGCACTCCTATCTGAGCATGACTGGCTTCGGTCAGTCCGGATGGCTTCATATGGATTTTTGTTATATGGTCCCGGTACTTATGCATGGTACTCATATCTTGACAGATGTATGCCCAAGCAAAGCGTGGAGAATGTAATGATGAAG : GTTTTATTAAACCAAATAGTGCTAGGTCCTTCTGTAATAGCTGTTATCTTTGCATGGAATAATTTATGGCTGGGAAAACTTTCAGAACTTCCAAACAAGTATCAGAAAGATGCCCTTCCAACTTTATTGTTCG : GATTTAGGTTCTGGATCCCTGTCAGCATTTTGAACTTTTG : GGCCATTCCTCTTCAAGCTCGTGTTGCATTCATGTCTATGGCCTCTATATTCTGGAATTTCTGTTTGTCAGCAACTATGAGCAAGTAACTACCGTCCAAAGGATTAGCTGGGAAGAGCAG : GATCCCGCAACTGATATAACCGCCTATCAAGACAGAGAAAATGATGTCTGGAGGCAACAGTTGAAACCATTCTGATTTTCCAAAAGTGGCTTGCACCAGGTTCTACAGTGCCTCAGCTCGCACTAACTACATATGATTTGTTTAGAATATAGTTTCCTTTAGTTTCCTAGTGCTATAACGAAAGACATATGTTTGGCTTGTTCGACCAATTCTTCCGTTGATTTGCTTTCTTTTGTCTGGTTTTTGGCATTCTTTTCCCTGTCTACACAATTTATAAACAAGTGCTGCTACATTATATATACGAAATCATCATGTTAAA : AAATAA : GTATACTAAAAATAGA</gDNA_template>
            <first_frame> E  K  R  G  T  K  K  Q  E  W  V  H  *  V  V  E  M  E  V  Y  G  E  W  D  F  S  I  L  K  N  G  I  L  E  E  E  E  G  E  V  M  V  E  N  R  Q  I  R  I  Q  W  M  Q  M  V  E  L  V  I  V  F  L  *  S  K  L  *  R  L  A  L  L  H  L  V  V  T  P  L  L  S  F  V  T  G  G  S  R  T  K  I  I  F  L  I  H  L  I  L  R :   I  *  L  V  H  S  Y  L  S  M  T  G  F  G  Q  S  G  W  L  H  M  D  F  C  Y  M  V  P  V  L  M  H  G  T  H  I  L  T  D  V  C  P  S  K  A  W  R  M  *  *  *  R :   F  Y  *  T  K  *  C  *  V  L  L  *  *  L  L  S  L  H  G  I  I  Y  G  W  E  N  F  Q  N  F  Q  T  S  I  R  K  M  P  F  Q  L  Y  C  S  :  D  L  G  S  G  S  L  S  A  F  *  T  F   : G  P  F  L  F  K  L  V  L  H  S  C  L  W  P  L  Y  S  G  I  S  V  C  Q  Q  L  *  A  S  N  Y  R  P  K  D  *  L  G  R  A   : G  S  R  N  *  Y  N  R  L  S  R  Q  R  K  *  C  L  E  A  T  V  E  T  I  L  I  F  Q  K  W  L  A  P  G  S  T  V  P  Q  L  A  L  T  T  Y  D  L  F  R  I  *  F  P  L  V  S  *  C  Y  N  E  R  H  M  F  G  L  F  D  Q  F  F  R  *  F  A  F  F  C  L  V  F  G  I  L  F  P  V  Y  T  I  Y  K  Q  V  L  L  H  Y  I  Y  E  I  I  M  L  K :   N  K :   Y  T  K  N  R </first_frame>
            <second_frame>  R  R  E  E  Q  K  N  K  N  G  F  I  E  W  W  K  W  K  Y  M  G  N  G  I  F  P  F  S  R  M  E  F  W  K  K  K  K  E  K  *  W  W  K  I  V  K  F  G  F  S  G  C  K  W  W  S  W  L  S  F  S  S  E  A  S  Y  D  G  *  L  S  C  T  *  W  *  H  H  C  S  A  S  *  P  V  A  Q  E  Q  R  *  S  S  *  S  I  S  S  *   : G  Y  D  W  C  T  P  I  *  A  *  L  A  S  V  S  P  D  G  F  I  W  I  F  V  I  W  S  R  Y  L  C  M  V  L  I  S  *  Q  M  Y  A  Q  A  K  R  G  E  C  N  D  E   : G  F  I  K  P  N  S  A  R  S  F  C  N  S  C  Y  L  C  M  E  *  F  M  A  G  K  T  F  R  T  S  K  Q  V  S  E  R  C  P  S  N  F  I  V  R :   I  *  V  L  D  P  C  Q  H  F  E  L  L  :  G  H  S  S  S  S  S  C  C  I  H  V  Y  G  L  Y  I  L  E  F  L  F  V  S  N  Y  E  Q  V  T  T  V  Q  R  I  S  W  E  E  Q  :  D  P  A  T  D  I  T  A  Y  Q  D  R  E  N  D  V  W  R  Q  Q  L  K  P  F  *  F  S  K  S  G  L  H  Q  V  L  Q  C  L  S  S  H  *  L  H  M  I  C  L  E  Y  S  F  L  *  F  P  S  A  I  T  K  D  I  C  L  A  C  S  T  N  S  S  V  D  L  L  S  F  V  W  F  L  A  F  F  S  L  S  T  Q  F  I  N  K  C  C  Y  I  I  Y  T  K  S  S  C  *   : K  I   : S  I  L  K  I   </second_frame>
            <third_frame>   E  E  R  N  K  K  T  R  M  G  S  L  S  G  G  N  G  S  I  W  G  M  G  F  F  H  S  Q  E  W  N  S  G  R  R  R  R  R  S  N  G  G  K  S  S  N  S  D  S  V  D  A  N  G  G  A  G  Y  R  F  P  L  K  Q  A  M  T  A  S  S  L  A  L  S  G  D  T  I  A  Q  L  R  D  R  W  L  K  N  K  D  N  L  P  D  P  S  H  P  K  :  D  M  I  G  A  L  L  S  E  H  D  W  L  R  S  V  R  M  A  S  Y  G  F  L  L  Y  G  P  G  T  Y  A  W  Y  S  Y  L  D  R  C  M  P  K  Q  S  V  E  N  V  M  M  K  :  V  L  L  N  Q  I  V  L  G  P  S  V  I  A  V  I  F  A  W  N  N  L  W  L  G  K  L  S  E  L  P  N  K  Y  Q  K  D  A  L  P  T  L  L  F   : G  F  R  F  W  I  P  V  S  I  L  N  F  W :   A  I  P  L  Q  A  R  V  A  F  M  S  M  A  S  I  F  W  N  F  C  L  S  A  T  M  S  K  *  L  P  S  K  G  L  A  G  K  S  R :   I  P  Q  L  I  *  P  P  I  K  T  E  K  M  M  S  G  G  N  S  *  N  H  S  D  F  P  K  V  A  C  T  R  F  Y  S  A  S  A  R  T  N  Y  I  *  F  V  *  N  I  V  S  F  S  F  L  V  L  *  R  K  T  Y  V  W  L  V  R  P  I  L  P  L  I  C  F  L  L  S  G  F  W  H  S  F  P  C  L  H  N  L  *  T  S  A  A  T  L  Y  I  R  N  H  H  V  K  :  K  *  :  V  Y  *  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38887" stop="38591"/>
                    <exon start="36157" stop="36002"/>
                    <exon start="35878" stop="35746"/>
                    <exon start="35657" stop="35618"/>
                    <exon start="35405" stop="35318"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EERNKKTRMGSLSGGNGSIWGMGFFHSQEWNSGRRRRRSNGGKSSNSDSVDANGGAGYRFPLKQAMTASSLALSGDTIAQLRDRWLKNKDNLPDPSHPKDMIGALLSEHDWLRSVRMASYGFLLYGPGTYAWYSYLDRCMPKQSVENVMMKVLLNQIVLGPSVIAVIFAWNNLWLGKLSELPNKYQKDALPTLLFGFRFWIPVSILNFWAIPLQARVAFMSMASIFWNFCLSATMSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="46988" PGL_stop="45784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46988" e_stop="46917"/>
            <exon e_start="46822" e_stop="46438"/>
            <exon e_start="46359" e_stop="45784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46988" e_stop="46917" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.987">
            <gDNA_intron_boundary i_start="46916" i_stop="46823" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46822" e_stop="46438" e_length="385"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.989">
            <gDNA_intron_boundary i_start="46437" i_stop="46360" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46359" e_stop="45784" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46988" stop="46917"/>
              <exon start="46822" stop="46438"/>
              <exon start="46359" stop="45784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGAACTTCAAACAGAACAAGCTCAGTATTTCATTGAAGCTGTACGCTCCGTTTATATCCCAGGGTGGAG : TTTTTTGCCAACAAAGAGGAATCGAAGAATGAAGGAAATCGAGAAGCATGTTCAGGCTACAATTAGAGGAATTATTGATAAAAGAGTGAAGGCAATGACAGGAGGAGAGGCGAATAACAAGGATCTACTTGGTATATTGCTCGAATCAAATTTTAAAGAAATCAAACAACATGGAGACAAGGACTTTGGACTTAGCATCGAAGAAGTCATTGAAGAATGCAAGTTGTTCTATTTTGCTGGACAAGAAACTACATCGGCGTTGCTTGTATGGACTCTAATTTTGTTGTGCAGACATCACGATTGGCAGACACGGGCCAGAACAGAGGTATTGCAAGTGTTTGGGAGTCGGAAACCAGATTTTGATGGACTGACTCATCTAAAAGTA : GTGACAATGATCTTGTACGAATCGTTAAGGTTATACCCTCCAGTAACGACAGTTACACGCCGGCTTAATGAAGATGCTGTACTAGGAGATATATCTCTACCAGCAGACGTGCTACTCTCATTACCAGCGGTCTTATTACACCACGATGAAGAGATATGGGGTGAAGACGCAAAGAAATTCAATCCAGAGAGATTTAGAGAAGGCGTTTCAAGTGCAACAAAGGGTCAAGTCACTTTCTTCCCGTTTACATGGGGTCCTAGAATATGCATTGGACAAAACTTCGCTATGTTAGAAGCAAAGATGGTGTTGGCTATGATCCTACAACGTTTCTCATTGGATTTATCCACATCTTATACTCATGCTCTTCATTCCGTTATAACTACGCAACCCCAATATGGTGCTCCACTTATTTTACACAAACTATAGTTTGTACTTGTAAGCAGTGTCTTGTTATATGTTAAGAGAGAGTTCAAACATGATTAATAAAGGCTTGTAGAACTGCCTATTGTTTGTTTTAGAGTTTCAAGTGTGCAGATACTGTATATGGAAAATCTACAACATCCAAGTAATTTACTT</gDNA_template>
            <first_frame> I  *  T  S  N  R  T  S  S  V  F  H  *  S  C  T  L  R  L  Y  P  R  V  E  :  F  F  A  N  K  E  E  S  K  N  E  G  N  R  E  A  C  S  G  Y  N  *  R  N  Y  *  *  K  S  E  G  N  D  R  R  R  G  E  *  Q  G  S  T  W  Y  I  A  R  I  K  F  *  R  N  Q  T  T  W  R  Q  G  L  W  T  *  H  R  R  S  H  *  R  M  Q  V  V  L  F  C  W  T  R  N  Y  I  G  V  A  C  M  D  S  N  F  V  V  Q  T  S  R  L  A  D  T  G  Q  N  R  G  I  A  S  V  W  E  S  E  T  R  F  *  W  T  D  S  S  K  S   : S  D  N  D  L  V  R  I  V  K  V  I  P  S  S  N  D  S  Y  T  P  A  *  *  R  C  C  T  R  R  Y  I  S  T  S  R  R  A  T  L  I  T  S  G  L  I  T  P  R  *  R  D  M  G  *  R  R  K  E  I  Q  S  R  E  I  *  R  R  R  F  K  C  N  K  G  S  S  H  F  L  P  V  Y  M  G  S  *  N  M  H  W  T  K  L  R  Y  V  R  S  K  D  G  V  G  Y  D  P  T  T  F  L  I  G  F  I  H  I  L  Y  S  C  S  S  F  R  Y  N  Y  A  T  P  I  W  C  S  T  Y  F  T  Q  T  I  V  C  T  C  K  Q  C  L  V  I  C  *  E  R  V  Q  T  *  L  I  K  A  C  R  T  A  Y  C  L  F  *  S  F  K  C  A  D  T  V  Y  G  K  S  T  T  S  K  *  F  T  </first_frame>
            <second_frame>  F  E  L  Q  T  E  Q  A  Q  Y  F  I  E  A  V  R  S  V  Y  I  P  G  W  S :   F  L  P  T  K  R  N  R  R  M  K  E  I  E  K  H  V  Q  A  T  I  R  G  I  I  D  K  R  V  K  A  M  T  G  G  E  A  N  N  K  D  L  L  G  I  L  L  E  S  N  F  K  E  I  K  Q  H  G  D  K  D  F  G  L  S  I  E  E  V  I  E  E  C  K  L  F  Y  F  A  G  Q  E  T  T  S  A  L  L  V  W  T  L  I  L  L  C  R  H  H  D  W  Q  T  R  A  R  T  E  V  L  Q  V  F  G  S  R  K  P  D  F  D  G  L  T  H  L  K  V  :  V  T  M  I  L  Y  E  S  L  R  L  Y  P  P  V  T  T  V  T  R  R  L  N  E  D  A  V  L  G  D  I  S  L  P  A  D  V  L  L  S  L  P  A  V  L  L  H  H  D  E  E  I  W  G  E  D  A  K  K  F  N  P  E  R  F  R  E  G  V  S  S  A  T  K  G  Q  V  T  F  F  P  F  T  W  G  P  R  I  C  I  G  Q  N  F  A  M  L  E  A  K  M  V  L  A  M  I  L  Q  R  F  S  L  D  L  S  T  S  Y  T  H  A  L  H  S  V  I  T  T  Q  P  Q  Y  G  A  P  L  I  L  H  K  L  *  F  V  L  V  S  S  V  L  L  Y  V  K  R  E  F  K  H  D  *  *  R  L  V  E  L  P  I  V  C  F  R  V  S  S  V  Q  I  L  Y  M  E  N  L  Q  H  P  S  N  L  L </second_frame>
            <third_frame>   L  N  F  K  Q  N  K  L  S  I  S  L  K  L  Y  A  P  F  I  S  Q  G  G   : V  F  C  Q  Q  R  G  I  E  E  *  R  K  S  R  S  M  F  R  L  Q  L  E  E  L  L  I  K  E  *  R  Q  *  Q  E  E  R  R  I  T  R  I  Y  L  V  Y  C  S  N  Q  I  L  K  K  S  N  N  M  E  T  R  T  L  D  L  A  S  K  K  S  L  K  N  A  S  C  S  I  L  L  D  K  K  L  H  R  R  C  L  Y  G  L  *  F  C  C  A  D  I  T  I  G  R  H  G  P  E  Q  R  Y  C  K  C  L  G  V  G  N  Q  I  L  M  D  *  L  I  *  K  * :   *  Q  *  S  C  T  N  R  *  G  Y  T  L  Q  *  R  Q  L  H  A  G  L  M  K  M  L  Y  *  E  I  Y  L  Y  Q  Q  T  C  Y  S  H  Y  Q  R  S  Y  Y  T  T  M  K  R  Y  G  V  K  T  Q  R  N  S  I  Q  R  D  L  E  K  A  F  Q  V  Q  Q  R  V  K  S  L  S  S  R  L  H  G  V  L  E  Y  A  L  D  K  T  S  L  C  *  K  Q  R  W  C  W  L  *  S  Y  N  V  S  H  W  I  Y  P  H  L  I  L  M  L  F  I  P  L  *  L  R  N  P  N  M  V  L  H  L  F  Y  T  N  Y  S  L  Y  L  *  A  V  S  C  Y  M  L  R  E  S  S  N  M  I  N  K  G  L  *  N  C  L  L  F  V  L  E  F  Q  V  C  R  Y  C  I  W  K  I  Y  N  I  Q  V  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46987" stop="46917"/>
                    <exon start="46822" stop="46438"/>
                    <exon start="46359" stop="45934"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FELQTEQAQYFIEAVRSVYIPGWSFLPTKRNRRMKEIEKHVQATIRGIIDKRVKAMTGGEANNKDLLGILLESNFKEIKQHGDKDFGLSIEEVIEECKLFYFAGQETTSALLVWTLILLCRHHDWQTRARTEVLQVFGSRKPDFDGLTHLKVVTMILYESLRLYPPVTTVTRRLNEDAVLGDISLPADVLLSLPAVLLHHDEEIWGEDAKKFNPERFREGVSSATKGQVTFFPFTWGPRICIGQNFAMLEAKMVLAMILQRFSLDLSTSYTHALHSVITTQPQYGAPLILHKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="65763" PGL_stop="66411"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65763" e_stop="66411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="65763" e_stop="66411" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65763" stop="66411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAATGAGAGCGATTTAAAAGAACCTGAAAAGGAGGATCAAAAGCCACAGACAGAAACTGATATCCCAGAATCTATGCCATCAGATATCCATCGGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGCCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAAGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGACAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGAGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATTTGGAGCTTGAACAACTTGATGTGAAGACAACGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  *  T  G  G  V  S  S  H  S  E  *  E  R  F  K  R  T  *  K  G  G  S  K  A  T  D  R  N  *  Y  P  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  P  *  F  *  K  M  V  C  C  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  R  R  D  I  T  S  R  R  S  Q  V  *  R  Q  G  C  C  *  R  F  Q  P  K  R  E  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  Y  T  S  E  F  G  A  *  T  T  *  C  E  D  N  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  K  E  D  Q  K  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  R  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  D  R  V  V  A  R  G  F  N  Q  R  E  R  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  T  H  Q  N  L  E  L  E  Q  L  D  V  K  T  T  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  I  N  R  W  S  F  K  S  F  R  M  R  A  I  *  K  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  S  Q  N  L  C  H  Q  I  S  I  G  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  A  L  I  L  K  N  G  L  L  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  K  K  G  Y  H  Q  Q  K  E  S  S  I  K  T  G  L  L  L  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65764" stop="66411"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEKEDQKPQTETDIPESMPSDIHRSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSPDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKDRVVARGFNQRERVDYNEIFSPVVRHTSIRVLLAIVTHQNLELEQLDVKTTFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="66422" PGL_stop="67229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66422" e_stop="67229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="66422" e_stop="67229" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66422" stop="67229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGAAAGCTATATGGTGATGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCACTCGAAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTGCCAATATCCATCTCACGACCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTTTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAAAGAACATTGGCAGGCTGTGAAGAGAATTTTTCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGATATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTTGAAGACAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  K  A  I  W  *  C  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  R  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  E  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  L  L  I  P  P  V  L  P  I  S  I  S  R  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  F  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  K  N  I  G  R  L  *  R  E  F  F  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  L  T  M  L  E  M  L  T  Q  E  D  R  *  L  D  M  C  L  P  L  E  D  L  S  S  V  *  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  K  L  Y  G  D  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  G  *  F  I  H  L  S  G  A  L  C  R  *  Y  A  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  H  S  K  D  S  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  Y  *  Y  P  Q  C  C  Q  Y  P  S  H  D  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  S  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  *  L  C  W  R  C  *  H  K  K  I  D  D  W  I  C  V  Y  P  W  R  I  C  R  Q  F  E  D  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  E  S  Y  M  V  M  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  T  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  T  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  K  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  L  K  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66424" stop="67227"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFESYMVMLGYTRSSYDCCVYYNRLKDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGATRKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTTMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGKEHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSLKTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="84351" PGL_stop="83294"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84351" e_stop="84059"/>
            <exon e_start="83637" e_stop="83294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.915"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="84351" e_stop="84059" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84058" i_stop="83638" i_length="421"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="83637" e_stop="83294" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84351" stop="84059"/>
              <exon start="83637" stop="83294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTTAGTAGTAAGCTTGGGAAGGAGGATTTGGCTCTGTTTATAAAGGAACACTGCGAGATGGCACCAAAATAGCTGTGAAGCATCTGGATGGTGTAGGTCAAGTAAAGGAATCATTCTTAACAGAAGTTAAGGCGGTCGGTGGCATTCACCATATCAACTTGGTAAAACTCATCGGATTTTGTGCTGAAAAATGCCACAGGCTTCTAATCTATGAGTACATGGTGAATGGATCACTGGATAGGTGGATTATACATGAAAACTGAGAAAATGGGCTTACATGGAGCACAAG : GCAGAGGATAATATCAGATATCGCCAAAGGGTTAGCGTATCTACATGAAGATTGCAGCCAAAAGATAATTCATTTGGACATCAAACCACAAAACAGCCTTCTGGATCAATATCTCAATGCCAAGATATCAGATTTTGGGTTGTTGAAGCTAATTGAGAAAGACAAAAGCAACGTTTTGACTAGAATGAGAGGAAAACGGGGTTATTTAGCCCCTGAATGGTTGAGCTCCGTAATCACTGAGAAAGTTTATGTTTATGCTTTTGGAATAGTCTTCTTGGAAATTCTCTGTGGGCGAAAGAATTTGGATAGGTCCCAAGCTGATGAAGAAGATGTCCATTTGCTAA</gDNA_template>
            <first_frame> R  F  *  *  *  A  W  E  G  G  F  G  S  V  Y  K  G  T  L  R  D  G  T  K  I  A  V  K  H  L  D  G  V  G  Q  V  K  E  S  F  L  T  E  V  K  A  V  G  G  I  H  H  I  N  L  V  K  L  I  G  F  C  A  E  K  C  H  R  L  L  I  Y  E  Y  M  V  N  G  S  L  D  R  W  I  I  H  E  N  *  E  N  G  L  T  W  S  T  R :   Q  R  I  I  S  D  I  A  K  G  L  A  Y  L  H  E  D  C  S  Q  K  I  I  H  L  D  I  K  P  Q  N  S  L  L  D  Q  Y  L  N  A  K  I  S  D  F  G  L  L  K  L  I  E  K  D  K  S  N  V  L  T  R  M  R  G  K  R  G  Y  L  A  P  E  W  L  S  S  V  I  T  E  K  V  Y  V  Y  A  F  G  I  V  F  L  E  I  L  C  G  R  K  N  L  D  R  S  Q  A  D  E  E  D  V  H  L  L  </first_frame>
            <second_frame>  D  F  S  S  K  L  G  K  E  D  L  A  L  F  I  K  E  H  C  E  M  A  P  K  *  L  *  S  I  W  M  V  *  V  K  *  R  N  H  S  *  Q  K  L  R  R  S  V  A  F  T  I  S  T  W  *  N  S  S  D  F  V  L  K  N  A  T  G  F  *  S  M  S  T  W  *  M  D  H  W  I  G  G  L  Y  M  K  T  E  K  M  G  L  H  G  A  Q   : G  R  G  *  Y  Q  I  S  P  K  G  *  R  I  Y  M  K  I  A  A  K  R  *  F  I  W  T  S  N  H  K  T  A  F  W  I  N  I  S  M  P  R  Y  Q  I  L  G  C  *  S  *  L  R  K  T  K  A  T  F  *  L  E  *  E  E  N  G  V  I  *  P  L  N  G  *  A  P  *  S  L  R  K  F  M  F  M  L  L  E  *  S  S  W  K  F  S  V  G  E  R  I  W  I  G  P  K  L  M  K  K  M  S  I  C  * </second_frame>
            <third_frame>   I  L  V  V  S  L  G  R  R  I  W  L  C  L  *  R  N  T  A  R  W  H  Q  N  S  C  E  A  S  G  W  C  R  S  S  K  G  I  I  L  N  R  S  *  G  G  R  W  H  S  P  Y  Q  L  G  K  T  H  R  I  L  C  *  K  M  P  Q  A  S  N  L  *  V  H  G  E  W  I  T  G  *  V  D  Y  T  *  K  L  R  K  W  A  Y  M  E  H  K  :  A  E  D  N  I  R  Y  R  Q  R  V  S  V  S  T  *  R  L  Q  P  K  D  N  S  F  G  H  Q  T  T  K  Q  P  S  G  S  I  S  Q  C  Q  D  I  R  F  W  V  V  E  A  N  *  E  R  Q  K  Q  R  F  D  *  N  E  R  K  T  G  L  F  S  P  *  M  V  E  L  R  N  H  *  E  S  L  C  L  C  F  W  N  S  L  L  G  N  S  L  W  A  K  E  F  G  *  V  P  S  *  *  R  R  C  P  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84084" stop="84059"/>
                    <exon start="83637" stop="83295"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENGLTWSTRQRIISDIAKGLAYLHEDCSQKIIHLDIKPQNSLLDQYLNAKISDFGLLKLIEKDKSNVLTRMRGKRGYLAPEWLSSVITEKVYVYAFGIVFLEILCGRKNLDRSQADEEDVHLL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84336" stop="84085"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AWEGGFGSVYKGTLRDGTKIAVKHLDGVGQVKESFLTEVKAVGGIHHINLVKLIGFCAEKCHRLLIYEYMVNGSLDRWIIHEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="95542" PGL_stop="94946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95542" e_stop="95358"/>
            <exon e_start="95278" e_stop="94946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.951"/>
          <exon-only e_score="0.892"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="95542" e_stop="95358" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95357" i_stop="95279" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.892">
            <gDNA_exon_boundary e_start="95278" e_stop="94946" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95542" stop="95358"/>
              <exon start="95278" stop="94946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCGCGTTCCGACACCAAGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATG : GATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATTGAGTAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAGTCTTGAAAGACGATAATATATTCAAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTATCTGATATATACT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  M  D  R  V  S  R  S  D  T  K  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  W :   I  G  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  Y  I  E  *  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  K  T  I  I  Y  S  N  L  M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  I  *  Y  I   </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  I  W  I  G  C  R  V  P  T  P  R  *  Y  M  D  R  V  P  R  S  G  T  R  I  V  Y   : G  S  E  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  S  I  L  S  S  G  V  S  R  T  D  T  R  G  I  K  I  M  S  L  E  R  R  *  Y  I  Q  I  *  *  T  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  N  F  M  I  L  S  D  I  Y  </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  C  I  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  Y  G  S  G  V  A  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  :  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  V  Y  *  V  A  E  C  H  V  P  T  R  G  E  *  R  *  *  V  L  K  D  D  N  I  F  K  S  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  Y  L  I  Y  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95491" stop="95358"/>
                    <exon start="95278" stop="95173"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKVVRLGDRVPRSGTRIEYMDRVSRSDTKIVYGSGATFRYQDSIWIGVSRSDTRIVYGSGATFRYQDRIWIGCHVPTPG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="96308" PGL_stop="95651"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96308" e_stop="95651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="96308" e_stop="95651" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96308" stop="95651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAACTGGCAGAAGCGACAGACCCCACGATGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGCGATGACCTGCAGGACGGACCGTCGCAGGCACAACGGGCCGTCACAGACTGCGAAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGATGTTTTGGACTATTCCTACTTTAATAATAAAGTTAGAGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGTCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAACACAAAGAATAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAAAACACAAAGCTTGGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATT</gDNA_template>
            <first_frame> E  K  L  A  E  A  T  D  P  T  M  D  R  H  G  H  D  G  P  S  Q  G  L  V  S  K  H  L  E  N  L  K  L  G  T  E  N  R  L  S  E  L  R  N  G  M  A  G  R  T  V  T  G  V  T  D  R  H  R  L  F  S  G  N  *  V  S  D  P  C  D  D  L  Q  D  G  P  S  Q  A  Q  R  A  V  T  D  C  E  I  P  V  W  V  G  F  L  Y  T  F  *  G  M  F  W  T  I  P  T  L  I  I  K  L  E  G  *  C  *  *  V  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  V  I  I  V  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  V  *  I  K  K  T  Q  R  I  R  E  R  E  R  K  S  N  E  K  E  D  R  T  R  G  K  K  T  Q  S  L  G  N  H  L  L  D  H  E  S  S  V  E  V  G  Y  G  F  H  A  I  R  S  K  L  L  I  A  N  D  M  C  *  *  Y  </first_frame>
            <second_frame>  K  N  W  Q  K  R  Q  T  P  R  W  T  V  M  G  T  T  D  R  R  R  V  S  F  Q  N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  R  T  V  T  D  Y  S  V  E  I  E  S  L  T  L  A  M  T  C  R  T  D  R  R  R  H  N  G  P  S  Q  T  A  K  S  Q  S  G  S  D  F  F  T  R  F  K  G  C  F  G  L  F  L  L  *  *  *  S  *  R  V  N  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  K  L  I  S  G  L  L  L  S  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G  F  E  *  R  K  H  K  E  *  E  K  E  R  E  S  R  T  R  K  R  I  E  R  E  E  K  K  H  K  A  W  E  I  T  C  L  I  T  N  L  R  W  R  *  V  M  V  F  M  L  F  V  V  N  S  *  *  R  M  I  C  V  S  S  I </second_frame>
            <third_frame>   K  T  G  R  S  D  R  P  H  D  G  P  S  W  A  R  R  T  V  A  G  S  R  F  K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  Q  I  I  Q  W  K  L  S  L  *  P  L  R  *  P  A  G  R  T  V  A  G  T  T  G  R  H  R  L  R  N  P  S  L  G  R  I  S  L  H  V  L  R  D  V  L  D  Y  S  Y  F  N  N  K  V  R  G  L  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  E  G  L  N  K  E  N  T  K  N  K  R  K  R  E  K  V  E  R  E  R  G  S  N  E  R  K  K  N  T  K  L  G  K  S  L  A  *  S  R  I  F  G  G  G  R  L  W  F  S  C  Y  S  *  *  T  L  N  S  E  *  Y  V  L  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96308" stop="96114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKLAEATDPTMDRHGHDGPSQGLVSKHLENLKLGTENRLSELRNGMAGRTVTGVTDRHRLFSGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="97012" PGL_stop="97188"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97012" e_stop="97188"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="97012" e_stop="97188" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97012" stop="97188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAAACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  N  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  P  F  K  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0020F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="98499" PGL_stop="102474"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98499" e_stop="100147"/>
            <exon e_start="101497" e_stop="102474"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.939"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="98499" e_stop="100147" e_length="1649"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="100148" i_stop="101496" i_length="1349"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="101497" e_stop="102474" e_length="978"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98499" stop="99199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99007" stop="99665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99076" stop="99833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99479" stop="99809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99686" stop="100147"/>
              <exon start="101497" stop="101593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99690" stop="100147"/>
              <exon start="101497" stop="102474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCGGCGGTAGTAGCTAGCTAACCCAATAAAGCTCCTTATTTCTGACACGTTAGTGGGTCTTACCCAATTCTTCACTGTCTCAACCTTAGAAGGATCCACCATCACTCCTTACTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCATTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAACACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGGGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTGTAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAGAAACTTATGGACCACCGAAACTGACTCAATCGAAGGTACATGGGTAGTGTCGTCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGTTTGGCTAACGTCACTGTTTTAGAATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAATTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAGCAATGGGCCCTCTCACCCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGGTTGCCCATCACCTCAGCCATTCTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAG : GTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTTGAACTGCGTAACCTCCGGAACCTTGTCCTCTAGAGCAAGAACCATTAAACTCACCTCTCTTTCGAAACCTTTTTGATGTCGATGTCGAGGTGAAGTCATCGGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGGAAGGATTTTGCTGTAGCCGCTACCTGTAAGGCCGAAATTCGCAACTCTGATCTCAACCCCTTCACAAACCGGCGAATCCTCTCTTGTGGACTGAAACAAAGTTGCGTGGCATATCTGGATAGTGCGTGAAACCTAGCCTCGTAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTCTTCCTATCCCTCAAAGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTCGGTTGACACTCAACATCTGATCGCCACCACATTTTGGCGTTCCCTTGAAACTTATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAATTTCATGTTGATCATTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGTTTATTTCCAATGGAACATCCATGCTGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTTGTTCATTCTCCCCATCATCCCCTTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATTAGATGGGTT</gDNA_template>
            <first_frame> K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  V  S  G  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  L  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  I  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  N  T  L  *  L  I  E  Q  V  I  N  A  G  K  G  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  V  R  G  Y  R  N  G  A  S  T  R  F  K  V  N  T  E  I  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  *  K  L  M  D  H  R  N  *  L  N  R  R  Y  M  G  S  V  V  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  M  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  N  *  R  I  C  P  R  F  G  *  R  H  C  F  R  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  Q  D  N  Q  I  Y  I  S  V  A  P  H  K  F  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  A  M  G  P  L  T  R  L  S  V  A  P  T  M  L  *  C  S  G  S  R  L  P  I  T  S  A  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  A  M  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R :   W  T  P  N  Y  S  L  *  *  R  L  N  G  L  N  C  V  T  S  G  T  L  S  S  R  A  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  G  E  V  I  G  L  H  S  F  H  L  Y  H  E  V  Y  H  F  L  E  G  F  C  C  S  R  Y  L  *  G  R  N  S  Q  L  *  S  Q  P  L  H  K  P  A  N  P  L  L  W  T  E  T  K  L  R  G  I  S  G  *  C  V  K  P  S  L  V  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  L  P  I  P  Q  S  P  R  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  R  L  T  L  N  I  *  S  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  M  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  I  S  C  *  S  F  V  I  T  G  P  V  V  R  R  G  N  V  F  I  S  N  G  T  S  M  L  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  L  D  G   </first_frame>
            <second_frame>  N  R  R  *  *  L  A  N  P  I  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  T  L  E  G  S  T  I  T  P  Y  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  M  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  L  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  T  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  I  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  L  W  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  *  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  Q  T  N  G  S  V  P  G  L  A  N  V  T  V  L  E  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  N  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  P  V  C  P  L  P  L  P  C  C  D  V  V  A  P  G  C  P  S  P  Q  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G   : G  G  P  P  T  T  V  C  S  E  D  *  M  G  *  T  A  *  P  P  E  P  C  P  L  E  Q  E  P  L  N  S  P  L  F  R  N  L  F  D  V  D  V  E  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  L  S  C  G  L  K  Q  S  C  V  A  Y  L  D  S  A  *  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  S  D  R  H  H  I  L  A  F  P  *  N  L  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  F  H  V  D  H  L  S  L  Q  A  L  *  S  D  E  E  M  C  L  F  P  M  E  H  P  C  W  E  P  *  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  S  A  L  V  H  S  P  H  H  P  L  L  L  L  L  L  Q  S  V  E  E  S  P  P  *  Y  *  M  G  </second_frame>
            <third_frame>   I  G  G  S  S  *  L  T  Q  *  S  S  L  F  L  T  R  *  W  V  L  P  N  S  S  L  S  Q  P  *  K  D  P  P  S  L  L  T  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  *  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  H  *  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  G  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  S  Q  T  K  S  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  C  K  G  V  *  K  W  G  E  Y  P  V  Q  G  Q  Y  R  N  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  L  E  T  Y  G  P  P  K  L  T  Q  S  K  V  H  G  *  C  R  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  K  L  T  D  L  S  Q  V  W  L  T  S  L  F  *  N  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  P  R  *  P  N  L  H  K  C  C  S  P  Q  I  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  S  N  G  P  S  H  P  S  V  R  C  P  Y  H  V  V  M  *  W  L  Q  V  A  H  H  L  S  H  S  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  C  H  D  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  :  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  R  N  L  R  N  L  V  L  *  S  K  N  H  *  T  H  L  S  F  E  T  F  L  M  S  M  S  R  *  S  H  R  A  S  L  L  P  P  L  S  R  S  L  P  L  L  G  R  I  L  L  *  P  L  P  V  R  P  K  F  A  T  L  I  S  T  P  S  Q  T  G  E  S  S  L  V  D  *  N  K  V  A  W  H  I  W  I  V  R  E  T  *  P  R  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  S  S  Y  P  S  K  S  E  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  S  V  D  T  Q  H  L  I  A  T  T  F  W  R  S  L  E  T  Y  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  Y  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  N  F  M  L  I  I  C  H  Y  R  P  C  S  Q  T  R  K  C  V  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  L  H  L  F  I  L  P  I  I  P  F  S  Y  Y  F  F  S  R  W  R  S  H  R  P  S  I  R  W  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101550" stop="101813"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPEPCPLEQEPLNSPLFRNLFDVDVEVKSSGFTPSTSITKSTTSWKDFAVAATCKAEIRNSDLNPFTNRRILSCGLKQSCVAYLDSA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99918" stop="100147"/>
                    <exon start="101497" stop="101521"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSRLPITSAILVTTITSTTTSSRITASAMTTSTSNIWRSVTLFWTISLNMSNLPTSIALSGFMHRSLREVLTGRRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98751" stop="98990"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERIRGIRKTKRHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTNTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99501" stop="99710"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHCFRITIQDRKLRRKPSHTQNYIKIIHFQDNQIYISVAPHKFHQTRPIYLFNYHRLTHRSRNTNRHIK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99214" stop="99423"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNLWTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98683" stop="98880"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINMITKRSKYGLKIPFIKLMNALGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="101852" PGL_stop="99059"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101852" e_stop="101666"/>
            <exon e_start="99572" e_stop="99059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.898"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.898">
            <gDNA_exon_boundary e_start="101852" e_stop="101666" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101665" i_stop="99573" i_length="2093"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="99572" e_stop="99059" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101852" stop="101666"/>
              <exon start="99572" stop="99059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGCTTACGAGGCTAGGTTTCACGCACTATCCAGATATGCCACGCAACTTTGTTTCAGTCCACAAGAGAGGATTCGCCGGTTTGTGAAGGGGTTGAGATCAGAGTTGCGAATTTCGGCCTTACAGGTAGCGGCTACAGCAAAATCCTTCCAAGAAGTGGTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATTCTAAAACAGTGACGTTAGCCAAACCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCATGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGACGACACTACCCATGTACCTTCGATTGAGTCAGTTTCGGTGGTCCATAAGTTTCTAGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTCTGTATTGACCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTACAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  R  G  *  V  S  R  T  I  Q  I  C  H  A  T  L  F  Q  S  T  R  E  D  S  P  V  C  E  G  V  E  I  R  V  A  N  F  G  L  T  G  S  G  Y  S  K  I  L  P  R  S  G  R  L   : R  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  F  *  N  S  D  V  S  Q  T  W  D  R  S  V  S  L  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  R  H  Y  P  C  T  F  D  *  V  S  F  G  G  P  *  V  S  R  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  F  L  Y  *  P  *  T  G  Y  S  P  H  F  Y  T  P  L  Q  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  D  F  V  C  E  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  R  F  H  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  S  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  H  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  H  V  P  S  I  E  S  V  S  V  V  H  K  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  I  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  M  L  T  R  L  G  F  T  H  Y  P  D  M  P  R  N  F  V  S  V  H  K  R  G  F  A  G  L  *  R  G  *  D  Q  S  C  E  F  R  P  Y  R  *  R  L  Q  Q  N  P  S  K  K  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  I  L  K  Q  *  R  *  P  N  L  G  Q  I  R  *  F  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  M  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  T  T  L  P  M  Y  L  R  L  S  Q  F  R  W  S  I  S  F  *  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  I  S  V  L  T  L  N  R  V  L  A  P  F  L  Y  P  L  T  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101851" stop="101666"/>
                    <exon start="99572" stop="99060"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEARFHALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEVVDFDVILGMTWLSPQFAILDCNSKTVTLAKPGTDPLVWEGDYTSNPVRIISFLHAKKMVSKGCLAFLAHLKDDTTHVPSIESVSVVHKFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPILFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="102843" PGL_stop="102552"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102843" e_stop="102552"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="102843" e_stop="102552" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102843" stop="102552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGACTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCAGCAGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  P  A  G  Q  G  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  D  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  H  Q  Q  D  R  V  R  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  T  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  S  T  S  R  T  G  C  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102794" stop="102552"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRDYKTLGKFHSFFLSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQHQQDRVRLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="104705" PGL_stop="104048"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104705" e_stop="104048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="104705" e_stop="104048" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104705" stop="104048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAACTGGCAGAAGCGACAGACCCCACGACGGACTGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGCGACGACCTGCAGGACGGACCGTTGCAGGCACGACGGGCCGTCACAGACTGTGAAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGAGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGTCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAACAGAAAGAACAAGAGAAAGAGAGAGAAATTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAAAACACAAAGCTTAGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATT</gDNA_template>
            <first_frame> E  K  L  A  E  A  T  D  P  T  T  D  C  H  G  H  D  G  P  S  Q  G  L  V  S  K  H  L  E  N  L  K  L  G  T  E  N  R  L  S  E  L  R  N  G  M  A  G  R  T  V  T  G  V  T  D  R  H  R  L  F  S  G  N  *  V  S  D  P  C  D  D  L  Q  D  G  P  L  Q  A  R  R  A  V  T  D  C  E  I  P  V  W  V  G  F  L  Y  T  F  *  G  T  F  W  T  I  P  T  L  I  I  K  L  E  G  *  C  *  *  V  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  V  I  I  V  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  V  *  I  K  K  T  E  R  T  R  E  R  E  R  N  S  N  E  K  E  D  R  T  R  G  K  K  T  Q  S  L  G  N  H  L  L  D  H  E  S  S  V  E  V  G  Y  G  F  H  A  I  R  S  K  L  L  I  A  N  D  M  C  *  *  Y  </first_frame>
            <second_frame>  K  N  W  Q  K  R  Q  T  P  R  R  T  V  M  G  T  T  D  R  R  R  V  S  F  Q  N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  R  T  V  T  D  Y  S  V  E  I  E  S  L  T  L  A  T  T  C  R  T  D  R  C  R  H  D  G  P  S  Q  T  V  K  S  Q  S  G  S  D  F  F  T  R  F  K  G  R  F  G  L  F  L  L  *  L  *  S  *  R  V  N  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  K  L  I  S  G  L  L  L  S  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G  F  E  *  R  K  Q  K  E  Q  E  K  E  R  E  I  R  T  R  K  R  I  E  R  E  E  K  K  H  K  A  *  E  I  T  C  L  I  T  N  L  R  W  R  *  V  M  V  F  M  L  F  V  V  N  S  *  *  R  M  I  C  V  S  S  I </second_frame>
            <third_frame>   K  T  G  R  S  D  R  P  H  D  G  L  S  W  A  R  R  T  V  A  G  S  R  F  K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  Q  I  I  Q  W  K  L  S  L  *  P  L  R  R  P  A  G  R  T  V  A  G  T  T  G  R  H  R  L  *  N  P  S  L  G  R  I  S  L  H  V  L  R  D  V  L  D  Y  S  Y  F  N  Y  K  V  R  G  L  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  E  G  L  N  K  E  N  R  K  N  K  R  K  R  E  K  F  E  R  E  R  G  S  N  E  R  K  K  N  T  K  L  R  K  S  L  A  *  S  R  I  F  G  G  G  R  L  W  F  S  C  Y  S  *  *  T  L  N  S  E  *  Y  V  L  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0020F06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104705" stop="104511"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKLAEATDPTTDCHGHDGPSQGLVSKHLENLKLGTENRLSELRNGMAGRTVTGVTDRHRLFSGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 80 chains have been computed
$ 
$ memory statistics:
$ 341336 bytes spliced alignments in total
$ 25 spliced alignments have been stored
$ 13653 bytes was the average size of a spliced alignment
$ 25472 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1498 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 108 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 18:04:23
-->
