<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-06 23:33:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213589" ref_strand="+" ref_description="SGN-E213589 [cLEC-76-A19]">
      <seq>ttttccggctgataaagctaaggaaatcatgcttatggctagtactagcaagggaaacaatcctgctaaaccattggaatctgctgccgatttggtggttccgagtttcggaaaaacttccatccaggaaaatcaaatgcctaaccagccaattgtttctgatttacctattgcgagaagagcttcattaacaaggtttttggagaagagaaaagataggctaactgcaaaagtaccttaccatagagaggaagcagcagctcctaaaaaggaagaacacaaggcgccatggctgggattgggtggtcaatttgcagtgaaaactgagcaatactagtttaccgtttttggctttaattgcttggtagaaagaagcctagataatcaattactacaagtttaatcctggcttcaactctcattgaaccccccatacttagatctgactattattattattactactttactgtaattaaaaccaaatatggttgttctctcaagtttttcatgtgtaatgaaatgttatcttcgctttgctttcatccgaatattaagagaccaaagactaaataggcaatagatttagatgatgttggcgtatgaatgaatatgttgttcaccaaattttcatctttttttgcctcatcttctccgctacataagtttttattaatttttttaaaaaattcaaatagaggagagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="3761" stop="2374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3461" g_stop="3301" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3300" i_stop="3221" i_length="80">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3220" g_stop="2674" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="708" r_length="547" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E213589" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3461" e_stop="3301"/>
          <exon e_start="3220" e_stop="2674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTGGTAATAGTTTTCCCCTTTTGAGTCTCTGTCCTTGCTTGTTTCTGTTTCGACTTCTATTTATGAGATTTTCGTCTTTGCAGATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTGTTCTCTCAAGTTTTTCATGTGTAATGAAATGTTATCTTCGCTTTGCTTTCATCCGAATATTAAGAGACCAAAGACTAAATAGGCAATAGATTTAGATGATGTTGGCGTATGAATGAATATGTTGTTCACCAAATTTTCATCTTTTTTTGCCTCATCTTCTCCGCTACATAAGTTTTTATTAATTTTTTAAAAAAATTCAAATAGAGGAGAGTAT</genome_strand>
        <mrna_strand>TTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTG................................................................................ATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTGTTCTCTCAAGTTTTTCATGTGTAATGAAATGTTATCTTCGCTTTGCTTTCATCCGAATATTAAGAGACCAAAGACTAAATAGGCAATAGATTTAGATGATGTTGGCGTATGAATGAATATGTTGTTCACCAAATTTTCATCTTTTTTTGCCTCATCTTCTCCGCTACATAAGTTTTTATTAATTTTTTTAAAAAATTCAAATAGAGGAGAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578094" ref_strand="-" ref_description="SGN-E578094 [LE08EA05]">
      <seq>aatctggtgagttggttcagaaatcgatgaatctgttccctcaaggtggaatgaaggctgagtcggaaccggaaaaggcacagatgacgatattctatggaggtcaagttattgtgtttaatgattttccggctgataaagctaaggaaatcatgcttatggctagtactagcaagggaaacaatcctgctaaaccattggaatctgctgccgatttggtggttccgagtttcggaaaaacttccatccaggaaaatcaaatgcctaaccagccaattgtttctgatttacctattgcgagaagagcttcattaacaaggtttttggagaagagaaaagataggctaactgcaaaagtaccttaccatagagaggaagcagcagctcctaaaaaggaagaacacaaggcgccatggctgggattgggtggtcaatttgcagtgaaaactgagcaatactagtttaccgtttttggctttaattgcttggtagaaagaagcctagataatcaattactacaagtttaatcctggcttcaactctcattgaaccccccacacttagatctgactattattattattactactttactgtaattaaaaccaaatatggttgttctctcaagtttttcatgtgtaatgaaatgttatcttcgctttgctttcatccgaatattaagagaccaaagactaaataggcaatagatttagatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="3885" stop="2489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3585" g_stop="3301" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3300" i_stop="3221" i_length="80">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3220" g_stop="2790" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="716" r_length="431" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="717" polyA_stop="731"/>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E578094" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578094" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3585" e_stop="3301"/>
          <exon e_start="3220" e_stop="2790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTGGTAATAGTTTTCCCCTTTTGAGTCTCTGTCCTTGCTTGTTTCTGTTTCGACTTCTATTTATGAGATTTTCGTCTTTGCAGATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTGTTCTCTCAAGTTTTTCATGTGTAATGAAATGTTATCTTCGCTTTGCTTTCATCCGAATATTAAGAGACCAAAGACTAAATAGGCAATAGATTTAGATG</genome_strand>
        <mrna_strand>AATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTG................................................................................ATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCACACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTGTTCTCTCAAGTTTTTCATGTGTAATGAAATGTTATCTTCGCTTTGCTTTCATCCGAATATTAAGAGACCAAAGACTAAATAGGCAATAGATTTAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715228" ref_strand="+" ref_description="SGN-E715228 [FB13CG10]">
      <seq>attcaaatactattattacaaatggcttcatcggagattgtggattccgggagatttgccggtcagaaatcgcatttctctcatacatgtaacttgttgagtcaatacttgaaagagaagaaaggttctttgggagatctcagccttgatatgcatcgcaatttcgattcagctggttctactactatggatttgttgccgatgattgagaaatctggtgagttggttcagaaatcgatgaatctgttccctcaaggtggaatgaaggctgagtcggaaccggaaaaggcacagatgacgatattctatggaggtcaagttattgtgtttaatgattttccggctgataaagctaaggaaatcatgcttatggctagtactagcaagggaaacaatcctgctaaaccattggaatctgctgccgatttggtggttccgagtttcggaaaaacttccatccaggaaaatcaaatgcctaaccagccaattgtttctgatttacctattgcgagaagagcttcattaacaaggtttttggagaagagaaaagataggctaactgcaaaagtaccttaccatagagaggaagcagcagctcctaaaaaggaagaacacaaggcgccatggctgggattgggtggtcaatttgcagtgaaaactgagcaatactagtttaccgtttttggctttaattgcttggtagaaagaagcctagataatcaattactacaagtttaatcctggcttncactctcattgaaccccccatacttagatctgactattattattattactactttactgtaattaaaccaaatatggttgttctctncagttttcatgtgtaatgaaatgttatcttcgcctttgcttcatccgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="4162" stop="2521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3866" g_stop="3692" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3691" i_stop="3622" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3621" g_stop="3301" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="496" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3300" i_stop="3221" i_length="80">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3220" g_stop="2821" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="894" r_length="398" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E715228" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3866" e_stop="3692"/>
          <exon e_start="3621" e_stop="3301"/>
          <exon e_start="3220" e_stop="2821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAATACTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTGGTATGATAATTTTGCTAGTATTTTTTTTTTTTGGAGTTGTATAACATGTATATGAGTTGTGTTTCAACAGGTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTGGTAATAGTTTTCCCCTTTTGAGTCTCTGTCCTTGCTTGTTTCTGTTTCGACTTCTATTTATGAGATTTTCGTCTTTGCAGATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTGTTCTCTCAAGTTTTTCATGTGTAATGAAATGTTATCTTCGCTTTGCTTTCATCCGAATATTAAGAGA</genome_strand>
        <mrna_strand>ATTCAAATACTATTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTG......................................................................GTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTG................................................................................ATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTNCACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATT-AAACCAAATATGGTTGTTCTCTNCAG-TTTTCATGTGTAATGAAATGTTATCTTCGCCTTTGCTTCATCCGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352960" ref_strand="+" ref_description="SGN-E352960 [cTOS-14-G13]">
      <seq>caatactagtttaccgtttttggctttaattgcttggtagaaagaagcctagataatcaattactacaagtttaatcctggcttcaactctcattgaaccccccatacttagatctgactattattattattactactttactgtaattaaaaccaaatatggttgttctctcaagtttttcatgtgtaatgaaatgttatcttcgctttgctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="3353" stop="2537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3053" g_stop="2828" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E352960" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3053" e_stop="2828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTGTTCTCTCAAGTTTTTCATGTGTAATGAAATGTTATCTTCGCTTTGCTTTCATCCGAATAT</genome_strand>
        <mrna_strand>CAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTGTTCTCTCAAGTTTTTCATGTGTAATGAAATGTTATCTTCGCTTTGCTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220936" ref_strand="+" ref_description="SGN-E220936 [cLEL-22-D13](-)">
      <seq>gagagagagattggacaagagaaaagataggctaactgcaaaagtaccttaccatagagaggaagcagcagctcctaaaaaggaagaacacaaggcgccatggctgggattgggtggtcaatttgcagtgaaaactgagcaatactagtttaccgtttttggctttaattgcttggtagaaagaagcctagataatcaattactacaagtttaatcctggcttcaactctcattgaaccccccatacttagatctgactattattattattactactttactgtaattaaaaccaaatatggttgttctctcaagtttttcatgtgtaatgaaatgttatcttcgctttgctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="3482" stop="2537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3192" g_stop="2838" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="371"/>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E220936" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3192" e_stop="2838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTGTTCTCTCAAGTTTTTCATGTGTAATGAAATGTTATCTTCGCTTTGCTTTC</genome_strand>
        <mrna_strand>GAGAGAGAGATTGGACAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTGTTCTCTCAAGTTTTTCATGTGTAATGAAATGTTATCTTCGCTTTGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221349" ref_strand="+" ref_description="SGN-E221349 [cLEL-22-D13](-)">
      <seq>agcagcagctcctaaaaaggaagaacacaaggcgccatggctgggattgggtggtcaatttgcagtgaaaactgagcaatactagtttaccgtttttggctttaattgcttggtagaaagaagcctagataatcaattactacaagtttaatcctggcttcaactctcattgaaccccccatacttagatctgactattattattattactactttactgtaattaaaaccaaatatggttgttctctcaagtttttcatgtgtaatgaaatgttatcttcgctttgctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="3429" stop="2537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3129" g_stop="2838" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="293" polyA_stop="308"/>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E221349" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3129" e_stop="2838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTGTTCTCTCAAGTTTTTCATGTGTAATGAAATGTTATCTTCGCTTTGCTTTC</genome_strand>
        <mrna_strand>AGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTGTTCTCTCAAGTTTTTCATGTGTAATGAAATGTTATCTTCGCTTTGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336429" ref_strand="-" ref_description="SGN-E336429 [cTOE-4-M23]">
      <seq>tgtgtttaatgattttccggctgataaagctaaggaaatcatgcttatggctagtactagcaagggaaacaatcctgctaaaccattggaatctgctgccgatttggtggttccgagtttcggaaaaacttccatccaggaaaatcaaatgcctaaccagccaattgtttgtgatttacctattgcgagaagagcttcattaacaaggtttttggagaagagaaaagataggctaactgcaaaagtaccttaccatagagaggaagcagcagctcctaaaaaggaagaacacaaggcgccatggctgggattgggtggtcaatttgcagtgaaaactgagcaatactagtttaccgtttttggctttaattgcttggtagaaagaagcctagataatcaattactacaagtttaatcctggcttcaactctcattgaaccccccatacttagatctgactattattattattactactttactgtaattaaaaccaaatatggttgttctctcaagtttttcatgtgtaatgaaatgttatcttcgctttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="3773" stop="2543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3473" g_stop="3301" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3300" i_stop="3221" i_length="80">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3220" g_stop="2844" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="550" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="561"/>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E336429" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336429" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3473" e_stop="3301"/>
          <exon e_start="3220" e_stop="2844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTGGTAATAGTTTTCCCCTTTTGAGTCTCTGTCCTTGCTTGTTTCTGTTTCGACTTCTATTTATGAGATTTTCGTCTTTGCAGATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTGTTCTCTCAAGTTTTTCATGTGTAATGAAATGTTATCTTCGCTTT</genome_strand>
        <mrna_strand>TGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTGTG................................................................................ATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTGTTCTCTCAAGTTTTTCATGTGTAATGAAATGTTATCTTCGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717700" ref_strand="+" ref_description="SGN-E717700 [FC02BH12]">
      <seq>gggcgattggcggccaatcggccgaattgatccttcaactttactctttcatttttcattcaaaaaatactactattacaaatggcttcatcggagattgtggattccgggagatttgccggtcagaaatcgcatttctctcatacatgtaacttgttgagtcaatacttgaaagagaagaaaggttctttgggagatctcagccttgatatgcatcgcaatttcgattcagctggttctactactatggatttgttgccgatgattgagaaatctggtgagttggttcaaaaatcgatgaatctgttccctcaaggtggaatgaaggctgagtcggaaccggaaaaggcacagatgacgatattctatggaggtcaagttattgtgtttaatgattttccggctgataaagctaaggaaatcatgcttatggctagtactagcaagggaaacaatcctgctaaaccattggaatctgctgccgatttggtggttccgagtttcggaaaaacttccatccaggaaaatcaaatgcctaaccagccaattgtttctgatttacctattgcgagaagagcttcattaacaaggtttttggagaagagaaaagataggctaactgcaaaagtaccttaccatagagaggaagcagcagctcctaaaaaggaagaacacaaggcgccatggctgggattgggtggtcaatttgcagtgaaaactgagcaatactagtttaccgtttttggctttaattgcttggtagaaagaagcctagataatcaattactacaagtttaatcctggcttcaactctcattgaaccccccatacttagatctgactattattattattactactttactgtaattaaaaccaaatatggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="4198" stop="2588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3896" g_stop="3692" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="235" r_length="206" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3691" i_stop="3622" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3621" g_stop="3301" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="556" r_length="321" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3300" i_stop="3221" i_length="80">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3220" g_stop="2888" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="889" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E717700" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3896" e_stop="3692"/>
          <exon e_start="3621" e_stop="3301"/>
          <exon e_start="3220" e_stop="2888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTTCAACTTTACT-TTTCATTTTTCATTCAAAAAATACTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTGGTATGATAATTTTGCTAGTATTTTTTTTTTTTGGAGTTGTATAACATGTATATGAGTTGTGTTTCAACAGGTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTGGTAATAGTTTTCCCCTTTTGAGTCTCTGTCCTTGCTTGTTTCTGTTTCGACTTCTATTTATGAGATTTTCGTCTTTGCAGATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTG</genome_strand>
        <mrna_strand>ATCCTTCAACTTTACTCTTTCATTTTTCATTCAAAAAATACTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTG......................................................................GTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAAAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTG................................................................................ATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556556" ref_strand="+" ref_description="SGN-E556556 [cTSD-3-N24]">
      <seq>cacatacatgtgctttagaccataatccttcaactttacttttcatttttcattcaaaaaatactactattacaaatggcttcatcggagattgtggattccgggagatttgccggtcagaaatcgcatttctctcatacatgtaacttgttgagtcaatacttgaaagagaagaaaggttctttgggagatctcagccttgatatgcatcgcaatttcgattcagctggttctactactatggatttgttgccgatgattgagaaatctggtgagttggttcagaaatcgatgaatctgttccctcaaggtggaatgaaggctgagtcggaaccggaaaaggcacagatgacgatattctatggaggtcaagttattgtgtttaatgattttccggctgataaagctaaggaaatcatgcttatggctagtactagcaagggaaacaatcctgctaaaccattggaatctgctgccgatttggtggttccgagtttcggaaaaacttccatccaggaaaatcaaatgcctaaccagccaattgtttctgatttacctattgcgagaagagcttcattaacaaggtttttggagaagagaaaagataggctaactgcaaaagtaccttaccatagagaggaagcagcagctcctaaaaaggaagaacacaaggcgccatggctgggattgggtggtcaatttgcagtgaaaactgagcaatactagtttaccgtttttggctttaattgcttggtagaaagaagcctagataatcaattactacaagtttaatcctggcttcaactctcattgaaccccccatacttagatctgactattattattattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="4220" stop="2619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3920" g_stop="3692" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3691" i_stop="3622" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3621" g_stop="3301" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="550" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3300" i_stop="3221" i_length="80">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3220" g_stop="2919" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="852" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E556556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3920" e_stop="3692"/>
          <exon e_start="3621" e_stop="3301"/>
          <exon e_start="3220" e_stop="2919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATACATGTGCTTTAGACCATAATCCTTCAACTTTACTTTTCATTTTTCATTCAAAAAATACTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTGGTATGATAATTTTGCTAGTATTTTTTTTTTTTGGAGTTGTATAACATGTATATGAGTTGTGTTTCAACAGGTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTGGTAATAGTTTTCCCCTTTTGAGTCTCTGTCCTTGCTTGTTTCTGTTTCGACTTCTATTTATGAGATTTTCGTCTTTGCAGATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACT</genome_strand>
        <mrna_strand>CACATACATGTGCTTTAGACCATAATCCTTCAACTTTACTTTTCATTTTTCATTCAAAAAATACTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTG......................................................................GTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTG................................................................................ATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271768" ref_strand="+" ref_description="SGN-E271768 [cLEM-8-G5]">
      <seq>acaaatggcttcatcggagattgtggattccgggagatttgccggtcagaaatcgcatttctctcatacatgtaacttgttgagtcaatacttgaaagagaagaaaggttctttgggagatctcagccttgatatgcatcgcaatttcgattcagctggttctactactatggatttgttgccgatgattgagaaatctggtgagttggttcagaaatcgatgaatctgttccctcaaggtggaatgaaggctgagtcggaaccggaaaaggcacagatgacgatattctatggaggtcaagttattgtgtttaatgattttccggctgataaagctaaggaaatcatgcttatggctagtactagcaagggaaacaatcctgctaaaccattggaatctgctgccgatttggtggttccgagtttcggaaaaacttccatccaggaaaatcaaatgcctaaccagccaattgtttctgatttacctattgcgagaagagcttcattaacaaggtttttggagaagagaaaagataggctaactgcaaaagtaccttaccatagagaggaagcagcagctcctaaaaaggaagaacacaaggcgccatggctgggattgggtggtcaatttgcagtgaaaactgagcaatactagtttaccgtttttggctttaattgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="4149" stop="2719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3849" g_stop="3692" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3691" i_stop="3622" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3621" g_stop="3301" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="479" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3300" i_stop="3221" i_length="80">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3220" g_stop="3019" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="681" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E271768" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3849" e_stop="3692"/>
          <exon e_start="3621" e_stop="3301"/>
          <exon e_start="3220" e_stop="3019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTGGTATGATAATTTTGCTAGTATTTTTTTTTTTTGGAGTTGTATAACATGTATATGAGTTGTGTTTCAACAGGTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTGGTAATAGTTTTCCCCTTTTGAGTCTCTGTCCTTGCTTGTTTCTGTTTCGACTTCTATTTATGAGATTTTCGTCTTTGCAGATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTT</genome_strand>
        <mrna_strand>ACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTG......................................................................GTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTG................................................................................ATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261559" ref_strand="+" ref_description="SGN-E261559 [cLEG-57-D3]">
      <seq>ctactattacaaatggcttcatcggagattgtggattccgggagatttgccggtcagaaatcgcatttctctcatacatgtaacttgttgagtcaatacttgaaagagaagaaaggttctttgggagatctcagccttgatatgcatcgcaatttcgattcagctgggtctactactatggatttgttgccgatgattgagaaatctggtgagttggttcagaaatcgatgaatctgttccctcaaggtggaatgaaggctgagtcggaaccggaaaaggcacagatgacgatattctatggaggacaagttattgtgtttaatgattttccggctgataaagctagggaaatcatgcttatggctagtactagcaagggaaacaatcctgctaaaccattggaatctgctgccgatttggtggttccgagtttcggaaaaacttccatccaggaaaatcaaatgcctaaccaggcaattgtttctgatttacctattgcgagaagagcttcattaacgaggtttttggagaagagaacagataggctaactgcaaaagtaccttaccatggagaggaagcagcagctcctagaaaggaagaacaccaggcgccatggctgggattgtgtggtcaatttgcagtgaaaactgagccatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="4157" stop="2746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3857" g_stop="3692" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3691" i_stop="3622" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3621" g_stop="3301" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="487" r_length="321" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3300" i_stop="3221" i_length="80">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3220" g_stop="3046" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="662" r_length="175" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E261559" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3857" e_stop="3692"/>
          <exon e_start="3621" e_stop="3301"/>
          <exon e_start="3220" e_stop="3046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTGGTATGATAATTTTGCTAGTATTTTTTTTTTTTGGAGTTGTATAACATGTATATGAGTTGTGTTTCAACAGGTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTGGTAATAGTTTTCCCCTTTTGAGTCTCTGTCCTTGCTTGTTTCTGTTTCGACTTCTATTTATGAGATTTTCGTCTTTGCAGATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTA</genome_strand>
        <mrna_strand>CTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTG......................................................................GGTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGACAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAGGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGGCAATTGTTTCTG................................................................................ATTTACCTATTGCGAGAAGAGCTTCATTAACGAGGTTTTTGGAGAAGAGAACAGATAGGCTAACTGCAAAAGTACCTTACCATGGAGAGGAAGCAGCAGCTCCTAGAAAGGAAGAACACCAGGCGCCATGGCTGGGATTGTGTGGTCAATTTGCAGTGAAAACTGAGCCATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210483" ref_strand="+" ref_description="SGN-E210483 [cLEC-35-M4]">
      <seq>ttcattcaaaaaatactactattacaaatggcttcatcggagattgtggattccgggagatttgccggtcagaaatcgcatttctctcatacatgtaacttgttgagtcaatacttgaaagagaagaaaggttctttgggagatctcagccttgatatgcatcgcaatttcgattcagctggttctactactatggatttgttgccgatgattgagaaatctggtgagttggttcagaaatcgatgaatctgttccctcaaggtggaatgaaggctgagtcggaaccggaaaaggcacagatgacgatattctatggaggtcaagttattgtgtttaatgattttccggctgataaagctaaggaaatcatgcttatggctagtactagcaagggaaacaatcctgctaaaccattggaatctgctgccgatttggtggttccgagtttcggaaaaacttccatccaggaaaatcaaatgcctaaccagccaattgtttctgatttacctattgcgagaagagcttcattaacaaggtttttggagaagagaaaagataggctaactgcaaaagtaccttaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="4172" stop="2838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3872" g_stop="3692" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3691" i_stop="3622" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3621" g_stop="3301" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="502" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3300" i_stop="3221" i_length="80">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3220" g_stop="3138" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="585" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E210483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3872" e_stop="3692"/>
          <exon e_start="3621" e_stop="3301"/>
          <exon e_start="3220" e_stop="3138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCAAAAAATACTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTGGTATGATAATTTTGCTAGTATTTTTTTTTTTTGGAGTTGTATAACATGTATATGAGTTGTGTTTCAACAGGTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTGGTAATAGTTTTCCCCTTTTGAGTCTCTGTCCTTGCTTGTTTCTGTTTCGACTTCTATTTATGAGATTTTCGTCTTTGCAGATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCAT</genome_strand>
        <mrna_strand>TTCATTCAAAAAATACTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTG......................................................................GTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTG................................................................................ATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344925" ref_strand="+" ref_description="SGN-E344925 [cTOF-21-J14]">
      <seq>agattgtggattccgggagatttgccggtcagaaatcgcatttctctcatacatgtaacttgttgagtcaatacttgaaagagaagaaaggttctttgggagatctcagccttgatatgcatcgcaatttcgattcagctggtatgataattttgctagtattttttttttttggagttgtataacatgtatatgagttgtgtttcaacaggttctactactatggatttgttgccgatgattgagaaatctggtgagttggttcagaaatcgatgaatctgttccctcaaggtggaatgaaggctgagtcggaaccggaaaaggcacagatgacgatattctatggaggtcaagttattgtgtttaatgattttccggctgataaagctaaggaaatcatgcttatggctagtactagcaagggaaacaatcctgctaaaccattggaatctgctgccgatttggtggttccgagtttcggaaaaacttccatccaggaaaatcaaatgcctaaccagccaattgtttctggtaatagttttccccttttgagtctctgtccttgcttgtttctgtttcgacttctatttatgagattttcgtctttgcagatttacctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="4132" stop="2910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3832" g_stop="3210" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E344925" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3832" e_stop="3210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTGGTATGATAATTTTGCTAGTATTTTTTTTTTTTGGAGTTGTATAACATGTATATGAGTTGTGTTTCAACAGGTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTGGTAATAGTTTTCCCCTTTTGAGTCTCTGTCCTTGCTTGTTTCTGTTTCGACTTCTATTTATGAGATTTTCGTCTTTGCAGATTTACCTATT</genome_strand>
        <mrna_strand>AGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTGGTATGATAATTTTGCTAGTATTTTTTTTTTTTGGAGTTGTATAACATGTATATGAGTTGTGTTTCAACAGGTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTGGTAATAGTTTTCCCCTTTTGAGTCTCTGTCCTTGCTTGTTTCTGTTTCGACTTCTATTTATGAGATTTTCGTCTTTGCAGATTTACCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241140" ref_strand="+" ref_description="SGN-E241140 [cLED-26-J21]">
      <seq>ttcaaaaaatactactattacaaatggcttcatcggagattgtggattccgggagatttgccggtcagaaatcgcatttctctcatacatgtaacttgttgagtcaatacttgaaagagaagaaaggttctttgggagatctcagccttgatatgcatcgcaatttcgattcagctggttctactactatggatttgttgccgatgattgagaaatctggtgagttggttcagaaatcgatgaatctgttccctcaaggtggaatgaaggctgagtcggaaccggaaaaggcacagatgacgatattctatggaggtcaagttattgtgtttaatgattttccggctgataaagctaaggaaatcatgcttatggctagtactagcaagggaaacaatcctgctaaaccattggaatctgctgccgatttggtggttccgagtttcggaaaaacttccatccaggaaaatcaaatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="4168" stop="3020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3868" g_stop="3692" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3691" i_stop="3622" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3621" g_stop="3320" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="479" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E241140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3868" e_stop="3692"/>
          <exon e_start="3621" e_stop="3320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAAAATACTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTGGTATGATAATTTTGCTAGTATTTTTTTTTTTTGGAGTTGTATAACATGTATATGAGTTGTGTTTCAACAGGTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCT</genome_strand>
        <mrna_strand>TTCAAAAAATACTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTG......................................................................GTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338157" ref_strand="+" ref_description="SGN-E338157 [cTOE-13-J17]">
      <seq>atggcttcatcggagattgtggattccgggagatttgccggtcagaaatcgcatttctctcatacatgtaacttgttgagtcaatacttgaaagagaagaaaggttctttgggagatctcagccttgatatgcatcgcaatttcgattcagctggttctactactatggatttgttgccgatgattgagaaatctggtgagttggttcagaaatcgatgaatctgttccctcaaggtggaatgaaggctgagtcggaaccggaaaaggcacagatgacgatattctatggaggtcaagttattgtgtttaatgattttccggctgataaagctaaggaaatcatgcttatggctagtactagcaagggaaacaatcctgctaaaccattggaatctgctgccgatttggtggttccgagtttcggaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="4145" stop="3045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3845" g_stop="3692" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3691" i_stop="3622" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3621" g_stop="3345" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="431" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E338157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3845" e_stop="3692"/>
          <exon e_start="3621" e_stop="3345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTGGTATGATAATTTTGCTAGTATTTTTTTTTTTTGGAGTTGTATAACATGTATATGAGTTGTGTTTCAACAGGTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAAC</genome_strand>
        <mrna_strand>ATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTG......................................................................GTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211999" ref_strand="+" ref_description="SGN-E211999 [cLEC-66-L9]">
      <seq>caaccccacccccacttctctaaccccacgtcctcttccgtgtttcatacaaacagtccatatatatatacacatacatgtgctttagaccataatccttcaactttacttttcatttttcattcaaaaaatactactattacaaatggcttcatcggagattgtggattccgggagatttgccggtcagaaatcgcatttctctcatacatgtaacttgttgagtcaatacttgaaagagaagaaaggttctttgggagatctcagccttgatatgcatcgcaatttcgattcagctggttctactactatggatttgttgccgatgattgagaaatctggtgagttggttcagaaatcgatgaatctgttccctcaaggtggaatgaaggctgagtcggaaccggaaaaagcacagatgacgatattctatggaggtcaagttattgtgtttaatgattttccggctgataaagctaaggaaatcatgcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="4290" stop="3125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3990" g_stop="3692" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3691" i_stop="3622" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3621" g_stop="3425" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="496" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E211999" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3990" e_stop="3692"/>
          <exon e_start="3621" e_stop="3425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCCCACCCCCACTTCTCTAACCCCACGTCCTCTTCCGTGTTTCATACAAACAGTCCATATATATATACACATACATGTGCTTTAGACCATAATCCTTCAACTTTACTTTTCATTTTTCATTCAAAAAATACTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTGGTATGATAATTTTGCTAGTATTTTTTTTTTTTGGAGTTGTATAACATGTATATGAGTTGTGTTTCAACAGGTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATG</genome_strand>
        <mrna_strand>CAACCCCACCCCCACTTCTCTAACCCCACGTCCTCTTCCGTGTTTCATACAAACAGTCCATATATATATACACATACATGTGCTTTAGACCATAATCCTTCAACTTTACTTTTCATTTTTCATTCAAAAAATACTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTG......................................................................GTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAAGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289092" ref_strand="+" ref_description="SGN-E289092 [cLES-18-G8]">
      <seq>aatactactattacaaatggcttcatcggagattgtggattccgggagatttgccggtcagaaatcgcatttctctcatacatgtaacttgttgagtcaatacttgaaagagaagaaaggttctttgggagatctcagccttgatatgcatcgcaatttcgattcagctggttctactactatggatttgttgccgatgattgagaaatctggtgagttggttcagaaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="4161" stop="3260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3861" g_stop="3692" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3691" i_stop="3622" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3621" g_stop="3560" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="232" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E289092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3861" e_stop="3692"/>
          <exon e_start="3621" e_stop="3560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTGGTATGATAATTTTGCTAGTATTTTTTTTTTTTGGAGTTGTATAACATGTATATGAGTTGTGTTTCAACAGGTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCG</genome_strand>
        <mrna_strand>AATACTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTG......................................................................GTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347153" ref_strand="+" ref_description="SGN-E347153 [cTOF-25-O15]">
      <seq>aacggtaaatccagacctatgaggaggaaatgcagtaatgtaagatcgtatttgacaaatggtaccattaatgttgagtatgtcaaatcttgtgataatcttgcagatcctcttacgaaggtcttaacaagagaaaaggtctggagcacatcgagggggataggattgaagcctacaaatccttcagtcatatatgaggaaactcaacctgnggaatagagatcctataaccaggttcaaagggaaaaactaatcatatgatgacttgttatgaaaaatacactattttttccctccctatgatgtgagtgcatttgttcctatagtttgtgaaggttgagttgataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="+" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="24343" stop="25293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24643" g_stop="24994" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="+" ref_id="SGN-E347153" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24643" e_stop="24994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTAAATCCATACCTATAAAGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTAATAATCTTGCAGATCCTCTTACGAAGGCCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATCCTTGATTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTAATAAAAC</genome_strand>
        <mrna_strand>AACGGTAAATCCAGACCTATGAGGAGGAAATGCAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGTCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATAGGATTGAAGCCTACAAATCCTTCAGTCATATATGAGGAAACTCAACCTGNGGAATAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTATGAAAAATACACTA-TTTTTTCCCTCCCTATGATGTGAGTGCATTTGTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731859" ref_strand="+" ref_description="SGN-E731859 [LA28BE11]">
      <seq>cccagcactcctacgcacaggaaaaattcccagaacctccttcacgcgcaaagccaccctccttctccttctctctatcgcgcgtggataagcaacggatacttgcgctcctgctgctccgtacagcacaagacgacgcgagtttgtccttggcatcataggatcgagccacgtcgtttgccaaggacgagggatcgatctccaccctccacccttcacctccctttttccgttcgaatcatccgtatttggataagatttcggaatttcgaaatgggaaatgggccgaaattcgtcttacccacccaaaaatcgaaaccctaattatttcctctatataaacccctgtcttcttcacaatagggggttggaaaaaatttttggggggaaattctttggtttttctgtttgtttcgaatgaactaaagaaaattacggagagttggaagaaatttcgggagtcatatttaggattaacatgcatacaaaatactcagagaagttgctcttttcgctttcgtgattaggattggtgagctattcaattctgcgacttttattccgtcattctgtgttcatgttttcgtttgggagaaggttgttgctgttgctgctcgtttccgtctcagtcttgctgctcggagagagcatgtgaaatccctctcgagtccattttgagactccattttcctccttgcatttcggaagagccatgaaggctcgaaaattttttatcgagtcaatctatcaaggcaggcgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0027C04-UwY6X/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0027C04.2" temp_strand="-" temp_description="C07SLe0027C04.2  AC212645.3 htgs_phase:1 submitted_to_sgn_as:gi|159647959|gb|AC212645.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0027C04, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="33218" stop="30081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32918" g_stop="32271" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32270" i_stop="30496" i_length="1775">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30495" g_stop="30381" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="763" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0027C04.2" gen_strand="-" ref_id="SGN-E731859" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0027C04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32918" e_stop="32271"/>
          <exon e_start="30495" e_stop="30381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGCACTCCTACGCACAGGAAAAATTCCCAGAACCTCCTTCACGCGCAAAGCCACCCTCCTTCTCCTTCTCTCTATCGCGCGTGGATAAGCAACGGATACTTGCGCTCCTGCTGCTCCGTACAGCACAAGACGACGCGAGTTTGTCCTTGGCATCATAGGATCGAGCCACGTCGTTTGCCAAGGACGAGGGATCGATCTCCACCCTCCACCCTTCACCTCCCTTTTTCCGTTCGAATCATCCGTATTTGGATAAGATTTCGGAATTTCGAAATGGGAAATGGGCCGAAATTCGTCTTACCCACCCAAAAATCGAAACCCTAATTATTTCCTCTATATAAACCCCTGTCTTCTTCACAATAGGGGGTTGGAAAAAATTTTTGGGGGGAAATTCTTTGGTTTTTCTGTTTGTTTCGAATGAACTAAAGAAAATTACAGAGAGTTGGAAGAAATTTCGGGAGTCATATTTAGGATTAACATGCATACAAAATACTCAAAGAAGTTGCTCTTTTCGCTTTCGTGATTAGGATTGGTGAGCTATTCAATTCTGCGACTTTTATTCCGTCATTCTGTGTTCATGTTTTCGTTTGGGTGAAGGTTGTTGCTGTTGCTGCTCGTTTCCGTCTCAGTCTTGCTGCTCGGAGAAAGGTAATCGCCCTATTAAAGCTTTCTTCTTCCATTTCTAACTTAGCATAATGTTTTGATCATGAAGTTGCTACTGTGATTGTTCCATTGTTATCAACCGAGTTTCTTTTCGTTTTCATTGCTATTGATTCGGTTTCTTTGATCTCTATGAACTTGTTGTTTCATGTCATGTTAATGATCTTTCCTTATCTTCACGGCCATCTTGAATTTTTCTGGTGATAGTTATTTGTTTACAACAAGGTTTAGATGGGAGCTTTGAATCTGTTTCTCATTCTTAAGGGTTTATCCAGTTCCTTTAGTGTGGAGTCCACTGTTTTGTATCGAGTAGCTGGTAATGGTGATTAGTTGTTAAGAATGTTGTGTTAGTTCTTGATATACTTCGCTTGCGCTGAGGCTTTTATTATGGGATGGTACAGTGTGTTTCGTTAATGTTGAAGTTTAGTGTATTCGTTGGTTTGAATGATAGAAAGGGATAATTTCCCATTAAGCTGGGTCTGCAGTTTATTGTTGCTCACTGTTGAGAGGCCTTTCAATGGTGCTTATCGTTATGGAGCCATATTAGCTGTTTGTCTTCTTTTCTCTCATATTACAAGTTCGTAGATAATCTATTTGAAGTTTATCACGCTGAGTTTCTTGATATCTTCACGTGCACCGAGAATCCATCTGGAGCAGCCTCTCTATCATTACAGGGCAGGGGTAAGGCTGAGGCTCCCATTGCGGGATGGTACGGTATGTCTTTTGTTGCTAAGACTGAAACTTTGTGCCCCTCATCGGGATTCTTGGTCTAAGATGGCTTAATGAAATAAGTTTTGATCGACTCTTCCCTTTTTGCTTTTTTTATGTGAAGTTTAAGTAGATTATAGTTTGTTTATCGAATGATCTTCCTATTTGATTACCTCAAGAGTGTTGTAGTGAATTAATGGTATTGTTGTCTATAACACATCATCGCCTGAGTCCCTTCTAATCGAACTTTGTTGAATATATGTTGGTAATCTTTTCTTTACTATGTTGTTTAGTCGTTACATGGGTAGGAAACATCAAAGTGTTTGAGTTATGATTATTTTGGAGTGATCTTTGTTCAACAGTGGCATAATGACCTCTTCTATTTTCTCTTTGCTGTGTTTTCAATATAATGTTAAGAATAATGTGTTTGTTTTAGGGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAGTACTTTTAAAAGTGCTGAAACTTATTTTAAAAATAAGCAGTTATGTGTTTGGATAAAAGTGCTGAAGTTGTTATGTCAAACGTGAAAAGAGGATAAATGGAAGAAAGAAATGTTAGGGTTATATGGGTAATTTGGAGATTGTATAAAAATATTAAGCACAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAATAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTAACTTAAAATAAACTGTTTTGAGTATTGTCAAACAGCTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAGGCTCTTAGTTATTTCTTTTAATTCTGCTGGCCATATTCCTTTCCTAGCCTAAATATCAAGCTCATCCAATCACTTTAGATTGTTGCTGCCTGCAATATGCAAAAATAAAATAAAATGTGTGTTATATCATTGTATGCATTGTTTATGTTACAAGTTGTTTATTGGACTTAGCATGTTAAGATTTCATGTTCCTTTCTTAACTCCATTTTCGTTTGATAGCATGTGAAATCCCTCTCGAGTCCATTTTGAGACTCCATTTTCCTCCTTGCATTTCGGAAGAGCCATGAAGGCTCGAAAATTTTTTATCGAGTCAATCTATCAAGGCAGGCGTACA</genome_strand>
        <mrna_strand>CCCAGCACTCCTACGCACAGGAAAAATTCCCAGAACCTCCTTCACGCGCAAAGCCACCCTCCTTCTCCTTCTCTCTATCGCGCGTGGATAAGCAACGGATACTTGCGCTCCTGCTGCTCCGTACAGCACAAGACGACGCGAGTTTGTCCTTGGCATCATAGGATCGAGCCACGTCGTTTGCCAAGGACGAGGGATCGATCTCCACCCTCCACCCTTCACCTCCCTTTTTCCGTTCGAATCATCCGTATTTGGATAAGATTTCGGAATTTCGAAATGGGAAATGGGCCGAAATTCGTCTTACCCACCCAAAAATCGAAACCCTAATTATTTCCTCTATATAAACCCCTGTCTTCTTCACAATAGGGGGTTGGAAAAAATTTTTGGGGGGAAATTCTTTGGTTTTTCTGTTTGTTTCGAATGAACTAAAGAAAATTACGGAGAGTTGGAAGAAATTTCGGGAGTCATATTTAGGATTAACATGCATACAAAATACTCAGAGAAGTTGCTCTTTTCGCTTTCGTGATTAGGATTGGTGAGCTATTCAATTCTGCGACTTTTATTCCGTCATTCTGTGTTCATGTTTTCGTTTGGGAGAAGGTTGTTGCTGTTGCTGCTCGTTTCCGTCTCAGTCTTGCTGCTCGGAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTGAAATCCCTCTCGAGTCCATTTTGAGACTCCATTTTCCTCCTTGCATTTCGGAAGAGCCATGAAGGCTCGAAAATTTTTTATCGAGTCAATCTATCAAGGCAGGCGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3990" PGL_stop="2674"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3990" e_stop="3692"/>
            <exon e_start="3621" e_stop="3301"/>
            <exon e_start="3220" e_stop="2674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3990" e_stop="3692" e_length="299"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3691" i_stop="3622" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3621" e_stop="3301" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.991">
            <gDNA_intron_boundary i_start="3300" i_stop="3221" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="3220" e_stop="2674" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3990" stop="3692"/>
              <exon start="3621" stop="3425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3920" stop="3692"/>
              <exon start="3621" stop="3301"/>
              <exon start="3220" stop="2919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3896" stop="3692"/>
              <exon start="3621" stop="3301"/>
              <exon start="3220" stop="2888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3872" stop="3692"/>
              <exon start="3621" stop="3301"/>
              <exon start="3220" stop="3138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3868" stop="3692"/>
              <exon start="3621" stop="3320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3866" stop="3692"/>
              <exon start="3621" stop="3301"/>
              <exon start="3220" stop="2821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3861" stop="3692"/>
              <exon start="3621" stop="3560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3857" stop="3692"/>
              <exon start="3621" stop="3301"/>
              <exon start="3220" stop="3046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3849" stop="3692"/>
              <exon start="3621" stop="3301"/>
              <exon start="3220" stop="3019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3845" stop="3692"/>
              <exon start="3621" stop="3345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3585" stop="3301"/>
              <exon start="3220" stop="2790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578094" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3473" stop="3301"/>
              <exon start="3220" stop="2844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336429" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3461" stop="3301"/>
              <exon start="3220" stop="2674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3192" stop="2838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3129" stop="2838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3053" stop="2828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACCCCACCCCCACTTCTCTAACCCCACGTCCTCTTCCGTGTTTCATACAAACAGTCCATATATATATACACATACATGTGCTTTAGACCATAATCCTTCAACTTTACTTTTCATTTTTCATTCAAAAAATACTACTATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTG : GTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTG : ATTTACCTATTGCGAGAAGAGCTTCATTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGCTAACTGCAAAAGTACCTTACCATAGAGAGGAAGCAGCAGCTCCTAAAAAGGAAGAACACAAGGCGCCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTTTACCGTTTTTGGCTTTAATTGCTTGGTAGAAAGAAGCCTAGATAATCAATTACTACAAGTTTAATCCTGGCTTCAACTCTCATTGAACCCCCCATACTTAGATCTGACTATTATTATTATTACTACTTTACTGTAATTAAAACCAAATATGGTTGTTCTCTCAAGTTTTTCATGTGTAATGAAATGTTATCTTCGCTTTGCTTTCATCCGAATATTAAGAGACCAAAGACTAAATAGGCAATAGATTTAGATGATGTTGGCGTATGAATGAATATGTTGTTCACCAAATTTTCATCTTTTTTTGCCTCATCTTCTCCGCTACATAAGTTTTTATTAATTTTTTAAAAAAATTCAAATAGAGGAGAGTAT</gDNA_template>
            <first_frame> Q  P  H  P  H  F  S  N  P  T  S  S  S  V  F  H  T  N  S  P  Y  I  Y  T  H  T  C  A  L  D  H  N  P  S  T  L  L  F  I  F  H  S  K  N  T  T  I  T  N  G  F  I  G  D  C  G  F  R  E  I  C  R  S  E  I  A  F  L  S  Y  M  *  L  V  E  S  I  L  E  R  E  E  R  F  F  G  R  S  Q  P  *  Y  A  S  Q  F  R  F  S  W :   F  Y  Y  Y  G  F  V  A  D  D  *  E  I  W  *  V  G  S  E  I  D  E  S  V  P  S  R  W  N  E  G  *  V  G  T  G  K  G  T  D  D  D  I  L  W  R  S  S  Y  C  V  *  *  F  S  G  *  *  S  *  G  N  H  A  Y  G  *  Y  *  Q  G  K  Q  S  C  *  T  I  G  I  C  C  R  F  G  G  S  E  F  R  K  N  F  H  P  G  K  S  N  A  *  P  A  N  C  F  * :   F  T  Y  C  E  K  S  F  I  N  K  V  F  G  E  E  K  R  *  A  N  C  K  S  T  L  P  *  R  G  S  S  S  S  *  K  G  R  T  Q  G  A  M  A  G  I  G  W  S  I  C  S  E  N  *  A  I  L  V  Y  R  F  W  L  *  L  L  G  R  K  K  P  R  *  S  I  T  T  S  L  I  L  A  S  T  L  I  E  P  P  I  L  R  S  D  Y  Y  Y  Y  Y  Y  F  T  V  I  K  T  K  Y  G  C  S  L  K  F  F  M  C  N  E  M  L  S  S  L  C  F  H  P  N  I  K  R  P  K  T  K  *  A  I  D  L  D  D  V  G  V  *  M  N  M  L  F  T  K  F  S  S  F  F  A  S  S  S  P  L  H  K  F  L  L  I  F  *  K  N  S  N  R  G  E  Y </first_frame>
            <second_frame>  N  P  T  P  T  S  L  T  P  R  P  L  P  C  F  I  Q  T  V  H  I  Y  I  H  I  H  V  L  *  T  I  I  L  Q  L  Y  F  S  F  F  I  Q  K  I  L  L  L  Q  M  A  S  S  E  I  V  D  S  G  R  F  A  G  Q  K  S  H  F  S  H  T  C  N  L  L  S  Q  Y  L  K  E  K  K  G  S  L  G  D  L  S  L  D  M  H  R  N  F  D  S  A   : G  S  T  T  M  D  L  L  P  M  I  E  K  S  G  E  L  V  Q  K  S  M  N  L  F  P  Q  G  G  M  K  A  E  S  E  P  E  K  A  Q  M  T  I  F  Y  G  G  Q  V  I  V  F  N  D  F  P  A  D  K  A  K  E  I  M  L  M  A  S  T  S  K  G  N  N  P  A  K  P  L  E  S  A  A  D  L  V  V  P  S  F  G  K  T  S  I  Q  E  N  Q  M  P  N  Q  P  I  V  S   : D  L  P  I  A  R  R  A  S  L  T  R  F  L  E  K  R  K  D  R  L  T  A  K  V  P  Y  H  R  E  E  A  A  A  P  K  K  E  E  H  K  A  P  W  L  G  L  G  G  Q  F  A  V  K  T  E  Q  Y  *  F  T  V  F  G  F  N  C  L  V  E  R  S  L  D  N  Q  L  L  Q  V  *  S  W  L  Q  L  S  L  N  P  P  Y  L  D  L  T  I  I  I  I  T  T  L  L  *  L  K  P  N  M  V  V  L  S  S  F  S  C  V  M  K  C  Y  L  R  F  A  F  I  R  I  L  R  D  Q  R  L  N  R  Q  *  I  *  M  M  L  A  Y  E  *  I  C  C  S  P  N  F  H  L  F  L  P  H  L  L  R  Y  I  S  F  Y  *  F  F  K  K  I  Q  I  E  E  S   </second_frame>
            <third_frame>   T  P  P  P  L  L  *  P  H  V  L  F  R  V  S  Y  K  Q  S  I  Y  I  Y  T  Y  M  C  F  R  P  *  S  F  N  F  T  F  H  F  S  F  K  K  Y  Y  Y  Y  K  W  L  H  R  R  L  W  I  P  G  D  L  P  V  R  N  R  I  S  L  I  H  V  T  C  *  V  N  T  *  K  R  R  K  V  L  W  E  I  S  A  L  I  C  I  A  I  S  I  Q  L  :  V  L  L  L  W  I  C  C  R  *  L  R  N  L  V  S  W  F  R  N  R  *  I  C  S  L  K  V  E  *  R  L  S  R  N  R  K  R  H  R  *  R  Y  S  M  E  V  K  L  L  C  L  M  I  F  R  L  I  K  L  R  K  S  C  L  W  L  V  L  A  R  E  T  I  L  L  N  H  W  N  L  L  P  I  W  W  F  R  V  S  E  K  L  P  S  R  K  I  K  C  L  T  S  Q  L  F  L  :  I  Y  L  L  R  E  E  L  H  *  Q  G  F  W  R  R  E  K  I  G  *  L  Q  K  Y  L  T  I  E  R  K  Q  Q  L  L  K  R  K  N  T  R  R  H  G  W  D  W  V  V  N  L  Q  *  K  L  S  N  T  S  L  P  F  L  A  L  I  A  W  *  K  E  A  *  I  I  N  Y  Y  K  F  N  P  G  F  N  S  H  *  T  P  H  T  *  I  *  L  L  L  L  L  L  L  Y  C  N  *  N  Q  I  W  L  F  S  Q  V  F  H  V  *  *  N  V  I  F  A  L  L  S  S  E  Y  *  E  T  K  D  *  I  G  N  R  F  R  *  C  W  R  M  N  E  Y  V  V  H  Q  I  F  I  F  F  C  L  I  F  S  A  T  *  V  F  I  N  F  L  K  K  F  K  *  R  R  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0027C04.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3902" stop="3692"/>
                    <exon start="3621" stop="3301"/>
                    <exon start="3220" stop="3045"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIILQLYFSFFIQKILLLQMASSEIVDSGRFAGQKSHFSHTCNLLSQYLKEKKGSLGDLSLDMHRNFDSAGSTTMDLLPMIEKSGELVQKSMNLFPQGGMKAESEPEKAQMTIFYGGQVIVFNDFPADKAKEIMLMASTSKGNNPAKPLESAADLVVPSFGKTSIQENQMPNQPIVSDLPIARRASLTRFLEKRKDRLTAKVPYHREEAAAPKKEEHKAPWLGLGGQFAVKTEQY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3832" e_stop="3210"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3832" e_stop="3210" e_length="623"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3832" stop="3210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344925" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTGTGGATTCCGGGAGATTTGCCGGTCAGAAATCGCATTTCTCTCATACATGTAACTTGTTGAGTCAATACTTGAAAGAGAAGAAAGGTTCTTTGGGAGATCTCAGCCTTGATATGCATCGCAATTTCGATTCAGCTGGTATGATAATTTTGCTAGTATTTTTTTTTTTTGGAGTTGTATAACATGTATATGAGTTGTGTTTCAACAGGTTCTACTACTATGGATTTGTTGCCGATGATTGAGAAATCTGGTGAGTTGGTTCAGAAATCGATGAATCTGTTCCCTCAAGGTGGAATGAAGGCTGAGTCGGAACCGGAAAAGGCACAGATGACGATATTCTATGGAGGTCAAGTTATTGTGTTTAATGATTTTCCGGCTGATAAAGCTAAGGAAATCATGCTTATGGCTAGTACTAGCAAGGGAAACAATCCTGCTAAACCATTGGAATCTGCTGCCGATTTGGTGGTTCCGAGTTTCGGAAAAACTTCCATCCAGGAAAATCAAATGCCTAACCAGCCAATTGTTTCTGGTAATAGTTTTCCCCTTTTGAGTCTCTGTCCTTGCTTGTTTCTGTTTCGACTTCTATTTATGAGATTTTCGTCTTTGCAGATTTACCTATT</gDNA_template>
            <first_frame> R  L  W  I  P  G  D  L  P  V  R  N  R  I  S  L  I  H  V  T  C  *  V  N  T  *  K  R  R  K  V  L  W  E  I  S  A  L  I  C  I  A  I  S  I  Q  L  V  *  *  F  C  *  Y  F  F  F  L  E  L  Y  N  M  Y  M  S  C  V  S  T  G  S  T  T  M  D  L  L  P  M  I  E  K  S  G  E  L  V  Q  K  S  M  N  L  F  P  Q  G  G  M  K  A  E  S  E  P  E  K  A  Q  M  T  I  F  Y  G  G  Q  V  I  V  F  N  D  F  P  A  D  K  A  K  E  I  M  L  M  A  S  T  S  K  G  N  N  P  A  K  P  L  E  S  A  A  D  L  V  V  P  S  F  G  K  T  S  I  Q  E  N  Q  M  P  N  Q  P  I  V  S  G  N  S  F  P  L  L  S  L  C  P  C  L  F  L  F  R  L  L  F  M  R  F  S  S  L  Q  I  Y  L   </first_frame>
            <second_frame>  D  C  G  F  R  E  I  C  R  S  E  I  A  F  L  S  Y  M  *  L  V  E  S  I  L  E  R  E  E  R  F  F  G  R  S  Q  P  *  Y  A  S  Q  F  R  F  S  W  Y  D  N  F  A  S  I  F  F  F  W  S  C  I  T  C  I  *  V  V  F  Q  Q  V  L  L  L  W  I  C  C  R  *  L  R  N  L  V  S  W  F  R  N  R  *  I  C  S  L  K  V  E  *  R  L  S  R  N  R  K  R  H  R  *  R  Y  S  M  E  V  K  L  L  C  L  M  I  F  R  L  I  K  L  R  K  S  C  L  W  L  V  L  A  R  E  T  I  L  L  N  H  W  N  L  L  P  I  W  W  F  R  V  S  E  K  L  P  S  R  K  I  K  C  L  T  S  Q  L  F  L  V  I  V  F  P  F  *  V  S  V  L  A  C  F  C  F  D  F  Y  L  *  D  F  R  L  C  R  F  T  Y  </second_frame>
            <third_frame>   I  V  D  S  G  R  F  A  G  Q  K  S  H  F  S  H  T  C  N  L  L  S  Q  Y  L  K  E  K  K  G  S  L  G  D  L  S  L  D  M  H  R  N  F  D  S  A  G  M  I  I  L  L  V  F  F  F  F  G  V  V  *  H  V  Y  E  L  C  F  N  R  F  Y  Y  Y  G  F  V  A  D  D  *  E  I  W  *  V  G  S  E  I  D  E  S  V  P  S  R  W  N  E  G  *  V  G  T  G  K  G  T  D  D  D  I  L  W  R  S  S  Y  C  V  *  *  F  S  G  *  *  S  *  G  N  H  A  Y  G  *  Y  *  Q  G  K  Q  S  C  *  T  I  G  I  C  C  R  F  G  G  S  E  F  R  K  N  F  H  P  G  K  S  N  A  *  P  A  N  C  F  W  *  *  F  S  P  F  E  S  L  S  L  L  V  S  V  S  T  S  I  Y  E  I  F  V  F  A  D  L  P  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0027C04.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3673" stop="3212"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFFFLELYNMYMSCVSTGSTTMDLLPMIEKSGELVQKSMNLFPQGGMKAESEPEKAQMTIFYGGQVIVFNDFPADKAKEIMLMASTSKGNNPAKPLESAADLVVPSFGKTSIQENQMPNQPIVSGNSFPLLSLCPCLFLFRLLFMRFSSLQIYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="24643" PGL_stop="24994"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24643" e_stop="24994"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="24643" e_stop="24994" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24643" stop="24994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACGGTAAATCCATACCTATAAAGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTAATAATCTTGCAGATCCTCTTACGAAGGCCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATCCTTGATTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTAATAAAAC</gDNA_template>
            <first_frame> N  G  K  S  I  P  I  K  R  K  H  S  N  V  R  S  Y  L  T  N  G  T  I  N  V  D  Y  V  K  S  C  N  N  L  A  D  P  L  T  K  A  L  T  R  E  K  V  W  S  T  S  R  G  M  G  L  K  P  T  N  P  *  F  I  Y  E  E  T  Q  P  G  D  *  R  S  Y  N  Q  V  Q  R  E  K  L  I  I  *  *  L  V  V  K  N  A  L  F  F  S  L  P  M  M  *  V  H  Y  F  L  *  F  V  K  V  E  L  I  K  </first_frame>
            <second_frame>  T  V  N  P  Y  L  *  R  G  N  T  V  M  *  D  R  I  *  Q  M  V  P  L  M  L  I  M  S  N  L  V  I  I  L  Q  I  L  L  R  R  P  *  Q  E  K  R  S  G  A  H  R  G  G  W  D  *  S  L  Q  I  L  D  S  Y  M  R  K  P  N  L  G  T  R  D  P  I  T  R  F  K  G  K  N  *  S  Y  D  D  L  L  *  K  M  H  Y  F  F  P  S  L  *  C  E  C  I  I  S  C  S  L  *  R  L  S  *  *  N </second_frame>
            <third_frame>   R  *  I  H  T  Y  K  E  E  T  Q  *  C  K  I  V  F  D  K  W  Y  H  *  C  *  L  C  Q  I  L  *  *  S  C  R  S  S  Y  E  G  L  N  K  R  K  G  L  E  H  I  E  G  D  G  I  E  A  Y  K  S  L  I  H  I  *  G  N  P  T  W  G  L  E  I  L  *  P  G  S  K  G  K  T  N  H  M  M  T  C  C  E  K  C  T  I  F  F  P  P  Y  D  V  S  A  L  F  P  V  V  C  E  G  *  V  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0027C04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="32918" PGL_stop="30381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32918" e_stop="32271"/>
            <exon e_start="30495" e_stop="30381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.710" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="32918" e_stop="32271" e_length="648"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.710">
            <gDNA_intron_boundary i_start="32270" i_stop="30496" i_length="1775"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30495" e_stop="30381" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32918" stop="32271"/>
              <exon start="30495" stop="30381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAGCACTCCTACGCACAGGAAAAATTCCCAGAACCTCCTTCACGCGCAAAGCCACCCTCCTTCTCCTTCTCTCTATCGCGCGTGGATAAGCAACGGATACTTGCGCTCCTGCTGCTCCGTACAGCACAAGACGACGCGAGTTTGTCCTTGGCATCATAGGATCGAGCCACGTCGTTTGCCAAGGACGAGGGATCGATCTCCACCCTCCACCCTTCACCTCCCTTTTTCCGTTCGAATCATCCGTATTTGGATAAGATTTCGGAATTTCGAAATGGGAAATGGGCCGAAATTCGTCTTACCCACCCAAAAATCGAAACCCTAATTATTTCCTCTATATAAACCCCTGTCTTCTTCACAATAGGGGGTTGGAAAAAATTTTTGGGGGGAAATTCTTTGGTTTTTCTGTTTGTTTCGAATGAACTAAAGAAAATTACAGAGAGTTGGAAGAAATTTCGGGAGTCATATTTAGGATTAACATGCATACAAAATACTCAAAGAAGTTGCTCTTTTCGCTTTCGTGATTAGGATTGGTGAGCTATTCAATTCTGCGACTTTTATTCCGTCATTCTGTGTTCATGTTTTCGTTTGGGTGAAGGTTGTTGCTGTTGCTGCTCGTTTCCGTCTCAGTCTTGCTGCTCGGAGAAAG : CATGTGAAATCCCTCTCGAGTCCATTTTGAGACTCCATTTTCCTCCTTGCATTTCGGAAGAGCCATGAAGGCTCGAAAATTTTTTATCGAGTCAATCTATCAAGGCAGGCGTACA</gDNA_template>
            <first_frame> P  S  T  P  T  H  R  K  N  S  Q  N  L  L  H  A  Q  S  H  P  P  S  P  S  L  Y  R  A  W  I  S  N  G  Y  L  R  S  C  C  S  V  Q  H  K  T  T  R  V  C  P  W  H  H  R  I  E  P  R  R  L  P  R  T  R  D  R  S  P  P  S  T  L  H  L  P  F  S  V  R  I  I  R  I  W  I  R  F  R  N  F  E  M  G  N  G  P  K  F  V  L  P  T  Q  K  S  K  P  *  L  F  P  L  Y  K  P  L  S  S  S  Q  *  G  V  G  K  N  F  W  G  E  I  L  W  F  F  C  L  F  R  M  N  *  R  K  L  Q  R  V  G  R  N  F  G  S  H  I  *  D  *  H  A  Y  K  I  L  K  E  V  A  L  F  A  F  V  I  R  I  G  E  L  F  N  S  A  T  F  I  P  S  F  C  V  H  V  F  V  W  V  K  V  V  A  V  A  A  R  F  R  L  S  L  A  A  R  R  K  :  H  V  K  S  L  S  S  P  F  *  D  S  I  F  L  L  A  F  R  K  S  H  E  G  S  K  I  F  Y  R  V  N  L  S  R  Q  A  Y  </first_frame>
            <second_frame>  P  A  L  L  R  T  G  K  I  P  R  T  S  F  T  R  K  A  T  L  L  L  L  L  S  I  A  R  G  *  A  T  D  T  C  A  P  A  A  P  Y  S  T  R  R  R  E  F  V  L  G  I  I  G  S  S  H  V  V  C  Q  G  R  G  I  D  L  H  P  P  P  F  T  S  L  F  P  F  E  S  S  V  F  G  *  D  F  G  I  S  K  W  E  M  G  R  N  S  S  Y  P  P  K  N  R  N  P  N  Y  F  L  Y  I  N  P  C  L  L  H  N  R  G  L  E  K  I  F  G  G  K  F  F  G  F  S  V  C  F  E  *  T  K  E  N  Y  R  E  L  E  E  I  S  G  V  I  F  R  I  N  M  H  T  K  Y  S  K  K  L  L  F  S  L  S  *  L  G  L  V  S  Y  S  I  L  R  L  L  F  R  H  S  V  F  M  F  S  F  G  *  R  L  L  L  L  L  L  V  S  V  S  V  L  L  L  G  E  S :   M  *  N  P  S  R  V  H  F  E  T  P  F  S  S  L  H  F  G  R  A  M  K  A  R  K  F  F  I  E  S  I  Y  Q  G  R  R  T </second_frame>
            <third_frame>   Q  H  S  Y  A  Q  E  K  F  P  E  P  P  S  R  A  K  P  P  S  F  S  F  S  L  S  R  V  D  K  Q  R  I  L  A  L  L  L  L  R  T  A  Q  D  D  A  S  L  S  L  A  S  *  D  R  A  T  S  F  A  K  D  E  G  S  I  S  T  L  H  P  S  P  P  F  F  R  S  N  H  P  Y  L  D  K  I  S  E  F  R  N  G  K  W  A  E  I  R  L  T  H  P  K  I  E  T  L  I  I  S  S  I  *  T  P  V  F  F  T  I  G  G  W  K  K  F  L  G  G  N  S  L  V  F  L  F  V  S  N  E  L  K  K  I  T  E  S  W  K  K  F  R  E  S  Y  L  G  L  T  C  I  Q  N  T  Q  R  S  C  S  F  R  F  R  D  *  D  W  *  A  I  Q  F  C  D  F  Y  S  V  I  L  C  S  C  F  R  L  G  E  G  C  C  C  C  C  S  F  P  S  Q  S  C  C  S  E  K   : A  C  E  I  P  L  E  S  I  L  R  L  H  F  P  P  C  I  S  E  E  P  *  R  L  E  N  F  L  S  S  Q  S  I  K  A  G  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0027C04.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32918" stop="32595"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSTPTHRKNSQNLLHAQSHPPSPSLYRAWISNGYLRSCCSVQHKTTRVCPWHHRIEPRRLPRTRDRSPPSTLHLPFSVRIIRIWIRFRNFEMGNGPKFVLPTQKSKP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0027C04.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32441" stop="32271"/>
                    <exon start="30495" stop="30466"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HAYKILKEVALFAFVIRIGELFNSATFIPSFCVHVFVWVKVVAVAARFRLSLAARRKHVKSLSSPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 39 chains have been computed
$ 
$ memory statistics:
$ 39816 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 2095 bytes was the average size of a spliced alignment
$ 8128 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2709 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 42 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-06 23:33:57
-->
