<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-07 03:15:34"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0048D18-Z3ZB2/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-abkjJV/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-abkjJV/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328659" ref_strand="+" ref_description="SGN-U328659        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | dual specificity protein phosphatase family protein, contains Pfam profile: PF00782 dual specificity phosphatase, catalytic domain | chr2:1588401-1590163 FORWARD | Aliases: T1O3.4, T1O3_4(evalue: 7e-81, score=297) genbank/nr: gi|42568937|ref|NP_178534.2| dual specificity protein phosphatase family protein [Arabidopsis thaliana] >gi|28393745|gb|AAO42283.1| putative protein phosphatase [Arabidopsis thaliana] >gi|28973409|gb|AAO64029.1| putative protein phosphatase [Arabidopsis thaliana] >gi|37813554|gb|AAR04550.1| dual-specificity phosphatase-like protein [Arabidopsis thaliana] (evalue: 5e-79, score=297)">
      <seq>gaattttcaagaatccctccacccggccaaaaccaaaattactagcaccggtagctataaaatcaccaaatctagccttaaattctctcttgacgcttctccttcttctatagtcacttcaaatcggatcaaatctaggcaaaagtttctcctttttcctcttctgggtcgttcttgttttttgtcgattgaggcggacatagtgaatcagttcagcatgaggaagagagagagggaaaacccatgtggtatttgtgggcattatcacaagtacgaagaaggggagccttgtggggtttgtgggcatcgaatgcctactgtttctgatatgggttctacaattcaagtcagtgcttttccttctgagatcttgccggagtttctgtttttgggaagctatgataatgcttctagagctgagcttcttaagagtcaagggatttctcgtgttctcaatactgtacctgcttgccaaaatctatataaaaattcctttacttatcactgccttggtgatgagcaagatttgcagtttgacgatgctatccaattcttagaacaatgtgaaagggatagggctcgtgttcttgtacattgcatgtcagggaaaagcaggtcacctgccattgtaattgcttacctgatgaaaagtagaggctggaaacttgcacagagctatcagtgggtgaaagatcggaggccttatgtcgaccttaatcaaggggtttaccatcaactagaggcgtatgaacagaagatgttcggatcactggagaaccagcctgcatttggcatgccggtcttttcttctcctgtgctgccatcattgagctttaactacccaaagcctagtgattcagtttcaattcagcctttcacttttctggtgctacatcaattttcgctcgtcctgatattggcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0048D18-Z3ZB2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0048D18.1" temp_strand="-" temp_description="C07SLe0048D18.1  AC217337.1 htgs_phase:2 submitted_to_sgn_as:gi|167472504|gb|AC217337.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0048D18, *** SEQUENCING IN PROGRESS ***">
        <position start="6627" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6327" g_stop="5871" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5870" i_stop="2291" i_length="3580">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2290" g_stop="2191" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="557" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2190" i_stop="795" i_length="1396">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="794" g_stop="736" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="615" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="735" i_stop="457" i_length="279">
            <donor d_prob="0.927" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="456" g_stop="350" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="722" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="349" i_stop="205" i_length="145">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="204" g_stop="1" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="924" r_length="202" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0048D18.1" gen_strand="-" ref_id="SGN-U328659" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>927</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0048D18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6327" e_stop="5871"/>
          <exon e_start="2290" e_stop="2191"/>
          <exon e_start="794" e_stop="736"/>
          <exon e_start="456" e_stop="350"/>
          <exon e_start="204" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTTCAAGAATCCCTCCACCCGGCCAAAACCAAAATTACTAGCACCGGTAGCTATAAAATCACCAAATCTAGCCTTAAATTCTCTCTTGACGCTTCTCCTTCTTCTATAGTCACTTCAAATCGGATCAAATCTAGGCAAAAGTTTCTCCTTTTTCCTCTTCTGGGTCGTTCTTGTTTTTTGTCGATTGAGGCGGACATAGTGAATCAGTTCAGCATGAGGAAGAGAGAGAGGGAAAACCCATGTGGTATTTGTGGGCATTATCACAAGTACGAAGAAGGGGAGCCTTGTGGGGTTTGTGGGCATCGAATGCCTACTGTTTCTGATATGGGTTCTACAATTCAAGTCAGTGCTTTTCCTTCTGAGATCTTGCCGGAGTTTCTGTTTTTGGGAAGCTATGATAATGCTTCTAGAGCTGAGCTTCTTAAGAGTCAAGGGATTTCTCGTGTTCTCAATGTGAGTCCCCTTTTACTTGTCTCCTTGCTTTCTTTGGTACTTTGTTTGAGTTAATTGAATTGTTAAGTAGTGTTGAGAAGTTCCAATCTTTGAGGCAAACGTTGTGAAGTGTGACTTTTTGTTGTTGTTGGTATGAATTATAATTAGTTGACCTTGTTTTGTTCTCGTGTTTGAGGGATTTGGGGATAGGCTTGTTATCTGTTGCATTGTCTTTTTGAATTTCTTGGAGGTACTCTTGTTGAGATAACTTAATTTAATAGTTACATAGTCAAATTCAATCACTTGGTGTACGGTCATGCATTTTTTGTGACTAGGCAATTTCTCTTTAACAATTTTGTTGTGAGTACCTTTCACTTCCTTTGTATGATGCATGTAGAAGATTCTCATTGTTGTAGTATAATAGTAACAATCTGCGAAAACGTGGCCTGAGTTTCCAATCCTAAGGTGTGTGAATGAATATAAATCACAAAACTGACCATACAACAACATCTCAATCCCAAGGTAGTTGATGAATCCAGAAACGATCCAAACTTGATGTTTGTTATACAGCCATGCCTTTAATCCACGTAATAAATGACAAGTTTGCGCAGCAGCTTTGCACTTAGGTCTTTTGATTTCTTTGGAGCTGTATGGGGTTCTCTGGTTTAAGTTGGCGATAAAATTATTATCTTGCATTGAATAGTTCATGAGGGAGGATTATGACAAGCAATGAAGAAGAATCTTCTTTAGCAAAAGTATCTAGTTTCTTTTTCTTCTCATATTTGTCTGAAAAAAATCAGCTCAACCCTCTTCTTATAAATGAGTTGGTGTCATATTTGTTAGTATCTTAAAACAAGCAAGCAAATTCCAGTAGACAAAAAAGACCCTTTCTTCCCATATGTGTGTTACTTGGTACTGGTGTTGGTGAGAGATGATAAGTACCTGTAATTAGGTGGTGAGTGTGCACTGCCCTGGACACCACCGTTGTCAAAAAGTAAGAAAAGTATCTTATAACAAAATGATGCATAACTCCATGCTCCTACACAAATCTTCAAAGATACTTATTTTATGATCTTGCCTATTTAGTGCGTGGCTTCAACTGCATCCTACCATTACAGTGTGAAATGAATTTGTGTTCCATCTCATAAAAGTCTAGTCTGTGGATTTTGGTTTTATTAAAAAATGCCTATTCAAACTTAGCCTTTAAACGACGCCGACGACTAGAATTAGATCTTGACTGAGATTCTTTTGGTAATTATCTGACATTTTCATTAACAACCGTGAAGAATTACAAAACTATAAGAGCGCCTTCACAGTTTGCTTTTCCATCTGCTATTCTCATGTACAAAGAAAAGTAAGAATAGAACCTAATCTAGAACACAAAGCTTTGATTCATGATCCTCATTCTACAGGGGCTCTTACATCACAAGCATAAACTGTTTCTCTTGCTACACATTCCTGAAGCCTTGATTTCTTCTCAAAGATCCTTTAATTCCTCTCGATCCAAATGGAGTGAACAAATTATGTATAGACCTTTCTGATAAGTTGAGCACTCTGTGTTTTCCCCTTGGTCCTCATTATTATCCAATTGAGGTGATGTTTCGAGTCTGTGGCAAAGAAAATCTGAAGATGAAGCCACTGTAATAATCTTTCTCATATCCATTTTGAATACAGCATATGAACAAATAAGTGGTCTCTGGATTCATTTGCTACAGCACATAACCTGTGTTGGTGATCCACATTCATTCCCCAAGAAGCTAACCTGTCAACTGTCATCAATCTTCCTTGCAACTGCAGCCAGGGTTTGATTATGACTTTATGTTGGGCTGCATTATTGAACATAAGACCCTTCCATCTCATTCGGGGACAGTCCCTATCAACTGAAGATAGATCTGCTTAACCAATCCTTTGTGGCGTGCTTCATTAATTTAGTTTGTAAGGCATGTCGTGCAATTTAAAGGGAACTTCCCTGTTGGAAATTAAGCTAATGTCTCTGTTGTCATCTTAGAATATTTGTCCATATTTGCCACTTGGCCAGAAAGGGAAGAATGTAAGTATGAGATTATGACACAGACACACAACAACTTATGATATGTCAAATTCATATGCTTCGACCTTGGAGGAATGGTTGGTGTGTGGCATTGAACTTTCCCCTTTCAGACAGGAACCAATATGGACATTATCTCATTTTATTTAATAAGCCTGCTGAGTTTTATTGTTTTCAATTCTGAACTCCATGGGTTTCTTTTTGGGATTTTGTACTTGCCATTTTCGTCTATAGCTATCTGCAATAAATTTTCTTTTTCTGGTGAAGTTCTGTAGTACATTCTCTTGTAATTTATACATTCCCGAACCCACAGTTTAAGTGCTAAGCCAACTTTAGTGGGAGTAGTTCATATAAGATGATGGGAACCTTTGAGAAAAACACATGCTGCAGTTTGGATATGATATTGTCTGGTTCATGTATGATGGTCTGGCTCATGTATGATGATGCACGCAAAAAACTACAACTGTGATGTGTATTGTACTGGTGGAAAAGCATGTCGTGCTGGTTTGAGTAGTATCATTGCATGATCTATTGTTTGTAGGAAGGCAAAAGATTATAGCTCATTGGCTGACGATATTGCCTAAGACAGTAGGAGTTATGTACACAATCTGAAGCCTTGGGAATTTCTCAGAAAGAAGAGAAAGAAAAGGAACTGACAAGAGGCTATATACAATGGAACTAATATCAATCATTGTAGTTAGAGGGACGGATTGCAGCAAGTGTAGTACACATCATTGCGGTGAATCTGGATTGGCTGAATGTTAATTTGATTAGTGGTCCTTTCCGGGGTTTCATGGACATAATTATGGATTTCCTACTCTACTTGATTAATATGCGCCATTTCCTCTCTTGGATGCTTTCTCATTGTCTAGTTAATTAGTCTCTAGTCCAGAGGAAGGGAAAGGTCAGTTTTCCTTTGATGTATATCTACCATTAGGTTATGAAGGTGATCTCGAATACGATGTTAGTTACTAAGACAAGGAGGAGTACCTATTCAGTTTTAGCTATGTTTTTGTTTATGCCCTTCCATTATTGATCAGGATCTTGATGAGCTATCATGAATTACCACCAGGGAGGTTGTGATTTATAGTTCTCTAAAAGAACATTCTTTGAATCCTATAAATATGAGCTGTGGAATAATTATACTCACTAACAGAATGAACCCAGTGAGGTTTGTTTGTCACCTTTTCAATCAAGCTGGACTCTTCCAACTTTTACTGGTGAATAACTCGATTTAGAGGGTAAGAGAGTGGCAAACAGTTCCACATAGCTTGTTCATTTTCCTGCTCTTTTCAAGTACACTGGGCTGTTTCTCTGCAATTTTTTAATTGATGCAATTTAATCTTGAGAATATTTTACCATCTGAATCGAACTAAACTATATCTGGCACTCAGGCTGTTTGCTAAAATATGCTGATGTTTCTCTTGCTATGCCATTTCAATTTTCATTTTAGTGCTTCAGAAGTTATGCATGAGACAACTTTTGCATGCATCTCCTATTACTTTCAATATATTGAACCAAGTTCTCACCCACATTTACTTTTTCTCTGTGCAGACTGTACCTGCTTGCCAAAATCTATATAAAAATTCCTTTACTTATCACTGCCTTGGTGATGAGCAAGATTTGCAGTTTGACGATGCTATCCAATTCTTAGGTGAGTGTCATTACTTGTGAACTTAGTATGTCTAAGCTTATTTTTGACAATTTTTTACTTTATAGGTTTAAAGAGTAGTTTAGTCTGACATAGGATTTTAGATGATTTCTTTTTTAGATTCTTGGCTTTGTTGGATATCAAGGAACAATAGGATTTGAAACACATAAAGTTACTATCACCAAATAAAATGGGTTTTGAGCATCTATTGGCTTTTCTGAAGGAAAGTTTTTACTAGCACGTAGTTATTTCTGGGGTATTTTCATTAAGAATACAAATGCTACTTATCAAAAGAACATTGTAGAAAGCACCCAAAGGCGTGGTCTAGTGGTCAATGAAGTGGTTAAGAACCCTGAAGTCTTGGGTTCAAGAGTTAGCGAGACAAATACCACTAGGTGATTCTTCCAATAAAGAGAAAAAAATGAACATTGTAGAAAACCTCTTCAGAACCCGGAAACATAATTAGAAACCCTTTTATTTCGCAATACCTATCAGTCAAATGTCTGCATTCTGAATTCCATTCACATTGTGTAAACATCATAGCTATTATTGACCATAGAATCACATAATGATTCTTTAACTGAGATAATTCTGCATCTATAAATATTATCAGCCTTTTGATCTCAGATGAGTTCTACTCTTTCATTGAAGTTCCTCTCTTGTAACTCAACTTTTGATCAATTTACTAAGTCACAATCTGCTTGATTATGCCCCTTGTTCCTCTTCCTAATAATCACCTTGTTCCAAACTTTGAAGCTTTAGCCTTGTATTTTCCACGAGACTAGGCATCCTTCCTCCGAGTTGACATGCTTGTATAGAGAGTTTTATTGTATGTGTATTACTTCTGCCCTCTGGCTGTTTGATCAATGATCCCTGTCTGTGAAGGACAAGCTACTGTGTTGAATTTCTCTTATGAATTTAACTACCTGGACTTTGACTGCGAGCTCTTCACAGAATCCAGTACTTCATTCTTTTATCCATCTTCAATTGTAGCTTTTTCCAGTTGAACGTTGAGTCTTCTACAGGCTTCTTGTGTATATATTTGTCTCCAACAGGCTGTTGTTTTGAACTTTTGGTCTAAAGTAGGAAACGAAGCTTGCCATCTTCTTTTCCTTTTCTTAATGCTTTGGTCGTGTCTTGGATATGTGCTTATACTTGACAGTTCTTGAAGATTAAACCTGACAGCACATGAAAAGATTTTACTTGAACTTTCTCTACAATCTACAACTATTGAGTAGGAAAGTATAGTATTCGTGCTAAAATATGATATCATGCAATTTTACTGCTATAGTTGAAACTGTCATGTTTATGGCTTCAACTTTATTTTAGAGCCATCTTTGTATGTTTTGTGGAGATGCTTTGCTGCTAAACTGATGTTAATGTTACTTTTCTTCTGCAGAACAATGTGAAAGGGATAGGGGCTCGTGTTCTTGTACATTGCATGTCAGGGAAAAGCAGGTTTGGAGTTTGATTTATGAATTTTGCATGCATAAGTTTTCATGATTTTCTGTTTGTTCTTTCTTTTTGGTTTGGTGTTGCATTTTTTCCTCCATTCTGTGTTCTTTCCCCGGGTTTCCCTGAAATATAATGGTGTACAGGTCAAAGCGTGTTTATCGAAACACCTATATTTGTTGATTGAGAATGAGAAATGCAGTAAACTGTTCCATAGAATTGGTTTCAACTGATTGTGCTTACAGAAGTAACTATTGTTACAACTTAATCGTGCATTTCCGACAGGTCACCTGCCATTGTAATTGCTTACCTGATGAAAAGTAGAGGCTGGAAACTTGCACAGAGCTATCAGTGGGTGAAAGATCGGAGGCCTTATGTCGACCTTAATCAAGGTTTAGTTATACCCTTATAAGCATTTCTTCATTGTACGTAGCTAGTTACTCTGCTCGGACATGCTCGCAATGATCTAGATTTTGTTTTTGTTATTATAGCCCTATATGTCAATGAAACCTTTTTCGTATTTTTTGGTAAATGCAGGGGTTTACCATCAACTAGAGGCGTATGAACAGAAGATGTTCGGATCACTGGAGAACCAGCCTGCATTTGGCATGCCGGTCTTTTCTTCTCCTGTGCTGCCATCATTGAGCTTTAACTACCCAAAGACCTAGTGATTCAGTTCAAATTCCAGCCTTCAACTTTTCTGGTGCTACATCAATTTTCGCTTGTCAAGATGTCGGCATT</genome_strand>
        <mrna_strand>GAATTTTCAAGAATCCCTCCACCCGGCCAAAACCAAAATTACTAGCACCGGTAGCTATAAAATCACCAAATCTAGCCTTAAATTCTCTCTTGACGCTTCTCCTTCTTCTATAGTCACTTCAAATCGGATCAAATCTAGGCAAAAGTTTCTCCTTTTTCCTCTTCTGGGTCGTTCTTGTTTTTTGTCGATTGAGGCGGACATAGTGAATCAGTTCAGCATGAGGAAGAGAGAGAGGGAAAACCCATGTGGTATTTGTGGGCATTATCACAAGTACGAAGAAGGGGAGCCTTGTGGGGTTTGTGGGCATCGAATGCCTACTGTTTCTGATATGGGTTCTACAATTCAAGTCAGTGCTTTTCCTTCTGAGATCTTGCCGGAGTTTCTGTTTTTGGGAAGCTATGATAATGCTTCTAGAGCTGAGCTTCTTAAGAGTCAAGGGATTTCTCGTGTTCTCAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTACCTGCTTGCCAAAATCTATATAAAAATTCCTTTACTTATCACTGCCTTGGTGATGAGCAAGATTTGCAGTTTGACGATGCTATCCAATTCTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGTGAAAGGGATA-GGGCTCGTGTTCTTGTACATTGCATGTCAGGGAAAAGCAG.......................................................................................................................................................................................................................................................................................GTCACCTGCCATTGTAATTGCTTACCTGATGAAAAGTAGAGGCTGGAAACTTGCACAGAGCTATCAGTGGGTGAAAGATCGGAGGCCTTATGTCGACCTTAATCAAG.................................................................................................................................................GGGTTTACCATCAACTAGAGGCGTATGAACAGAAGATGTTCGGATCACTGGAGAACCAGCCTGCATTTGGCATGCCGGTCTTTTCTTCTCCTGTGCTGCCATCATTGAGCTTTAACTACCCAAAG-CCTAGTGATTCAGTTTCAATT-CAGCCTTTCACTTTTCTGGTGCTACATCAATTTTCGCTCGTCCTGATATTGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-abkjJV/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325032" ref_strand="+" ref_description="SGN-U325032        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:1416342-1418438 REVERSE | Aliases: F13M7.2, F13M7_2(evalue: 7e-34, score=125) genbank/nr: ESTs(evalue: 3e-32, score=126)">
      <seq>ggcgattggcggccaatcggccgaattgagactttgcccattccgcaagttaatcactctgaactgaaatctgtttgagccatgtacatttacagaggtttgaagcggtttagaatctctgattcatcaattgttaatcgtctaacagtgcctcagttgaaaagaaaagcttctaattcatggtctgctattcaggacactttttattcaacaaaggttatactttaagacatcttcatgaatcaagagttgatcaacggcttgaatctatagagaaagctatgaagaaagattatcagattgaagatcctgaatttaagaagcttgtgtctggatccattagtattcccgcttgtgctgcaactgctggaaccacactaattctcgggtatggcttgggttttcgaggtggaaaatggtacgcaaacagaaattttagaagagaacagatgaaattgttgggacaaataaaacctaaaagatggccactaaggtttttacgacgaccactaataaggtctaaatcgccagaaaatcttgttactgcatcagaaacattaccgaaggttgcatctacttcccacagtggaggataatcccctaacttgctgacaaaacgaggtccaatggctaattttttttttttggttctgtcgaaattactgctagtacagaaaagccgtgtagtttatcaaatgttaataaccatattattgtttataataccttgtcatcggactgtgttttcttatttcttaattaccaatcagggtttgaaatcttaaaaaaaaaaaaaaaaaaactcgaggggggcccggtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0048D18-Z3ZB2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0048D18.1" temp_strand="-" temp_description="C07SLe0048D18.1  AC217337.1 htgs_phase:2 submitted_to_sgn_as:gi|167472504|gb|AC217337.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0048D18, *** SEQUENCING IN PROGRESS ***">
        <position start="15172" stop="7487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14866" g_stop="14818" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="79" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14817" i_stop="14707" i_length="111">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14706" g_stop="14570" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="216" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14569" i_stop="11237" i_length="3333">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11236" g_stop="11172" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="281" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11171" i_stop="8729" i_length="2443">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8728" g_stop="8622" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="388" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8621" i_stop="8184" i_length="438">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8183" g_stop="7788" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="785" r_length="397" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="786" polyA_stop="803"/>
      <MATCH_line gen_id="C07SLe0048D18.1" gen_strand="-" ref_id="SGN-U325032" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0048D18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14866" e_stop="14818"/>
          <exon e_start="14706" e_stop="14570"/>
          <exon e_start="11236" e_stop="11172"/>
          <exon e_start="8728" e_stop="8622"/>
          <exon e_start="8183" e_stop="7788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGCCCATTCCGCAAGTTAATCACTCTGAACTGAAATCTGTTTGAGGTATATTAGCTTAATTTTCTCTTGCCAAAGTTAATTTACGAAGAAACAAAGCCCTATTTCTCCTAAATTTTGATAATTCATAGTATTTTTTTTTTGCGAATTTGCTGGCAGCCATGTACATTTACAGAGGTTTGAAGCGGTTTAGAATCTCTGATTCATCAATTGTTAATCGTCTAACAGTGCCTCAGTTGAAAAGAAAAGCTTCTAATTCATGGTCTGCTATTCAGGACACTTTTTATTCAACAAAGGTACTGTCTTTTCTTCTTTTTGAACTTTTTTTTTTTGTGATTCTTTGATGGATATTTGATTGTTTTTATGGGTTTTAGATTAAATTTTTTTATTTTTGTGTGAGAATGAACATATGTAATAGTGAAAATGTAAATTCTTTCTTTTGTTTTGGTGTGATTTTATTGGGGAATAGGATATATTTGAGAGGCATAAGGTGGTGTTCACAATCTCGACGTCAATAGCATCAGTTGCTACAGCATGGTTCGGTATGTTGATGGTTTTGTCCTCACTTTTATTAACTTGCTTGCTAATTCTTGTTGGAGTTTTGGGGTATTCATTTATTACCATTTAATGTTGTTTTTCATTCTTTGGCTTGAGAAGAAGTTTTGATATGCAAGAGAGTAATTATTCTTCATTTAATAAGTAAGAAGAGGCTTGCCTATACACTTTCTAGTGTACACGTTGTGTTTTTTGATTGGAGCTTGTCACTCACTACCTGGATCAATTAGCCTATTCTAGTTTGCATTGTGTCATCCGATTTTAGGGAATTCGTTGGTTAATGAAATTGCTTCACACTTCCCATATGGAGGGAATGAAGATGAACTTGTCCCATAAAAAGTGAAAAAAACTTGAATGGGAGTGATTGGTCATTGAGAAAGATGTGTTTTTGACAAAATTCATTGAACACCATACACAAGTCAAAGCTTTTAGAGAGAATGCAGAAAGAACTTGAAGGAAGTTTCAACAATTTTATTCTATGTGTAACACACACTTCTCCAGTTATATACAAGATGCTGCTACTTGCAATGTACCATATCTAAATTAATGTGGTCCAAAGTATTTAATCAAATGTTATACCAACTGGAACGGACTGATTAATGAAAAGAACTTTAGCTACTTAATCACCTACAATCTCTTGAGTTAATGATGTAAAGACAAAGTCTTCTTTGCTTGAGTGAGCTCCTCTTGCATATAAGCCTTCTTGCCAACACCCTTGTTCAAGTTGGAGCCCTATTAGGAGATCATTATAGGTAGGGAATGGTAGTGACTTAGTAAAATGATCTGCCTATTGAGACAGATAAGTGTAAAACGAATTGACATATGGTCTCAATCAATTCCTCCCTGCTATGACAATCACACTCAATGTGTTTTGTGCTTTTAAAAGAAACTGGATCCAGTAAGGTAAATGGATACTTGATTGTCACAGTCCAAGGGACAAGAGTAATGGATGTGACAATCAGTTCATCTAGCTGTCTAAATACCTAAGACAATTGTACCACCAGTTCTCTAATCGAATTATATATAGCCTCTGCTGAAGATAAAAAAAATGGCAAGCTGCTTCTTAGACTTCCAACAGAGCAATCTGGTACCTAATAAAACCACACAGACAAAAACTGGTCTCCGTGATCACTGTTCAGAAAACTTGAGTTGAAAAGAAGCAAAGAGGCACATAAAAACTGTGCGTAGGATCTTTTTTGATGTTTCGAGGACCTGAGATTGTAGCAGGGAACCCTTGAAGATTGCTTAAATTGATTGAGGTTTAACCAACAAAGGATATATCAGATCTGGTGTGAGGAGGTTTGACTTCTGAATAAGTTTATTCTACTGGTCAGAACCATCTTTGACATCCAGATAATTAGCAGCTGAACCTGCTAACTAACTGAATAATTATATAACAATGATTCATGTGAAATTTTTCTAAATCCTCAAAAATTACCATAACTTGATTTAGATGCATATGGTCGAGGGCGTGTAGAGGGAGGGGACGTGGTTGAGGAATGCTCTGAAATTAAACTAATAGAACTAAAGCAAACTTTTGTTGAGGAGTCAGAAATCTTTAGGTTCCTGCAGCAGCCAAATCCAACTCGTAACAAAAAAGATTTGAATCTTTAATTAGAGCTCCTTCCTCTCCAACACCTTACTTCAAGTTGGAAATGGGAGGACGAACAAGTTTTGGCAGGATTTTGGTTGGTCAATGCAGGAATATCAACTTCTGGTGTAGCTTAAATGACTGGGAAGTGGACACTGTGTCCTTGTTACTGCTCCAGCTTCACAACAACAATCCTGAATTTCCGAACCTGATTTTCTGATTTGGAAAGGTGATGCAAAAGGAAAATTTACAGTAAAAGCATGGTACAACCAACCAAGTGACCTTTCTGCTACCTTTGTCATTGGCCTTGGGAGTGTATTTGGAGGTAAAAGGCACTTTGAGGCTGGAGTATTTCACCTGGTAGTAGACTAGGGAGCATGCTTAACTCATGAAAATCACTAGAAAGAGGGGTCAATCGTCAATAAATGAAGCAGACATTCACTAAAAATGGAAGCCAAAAAGAGGATATCACTCGCCTTTAGTGAAGGCAAAATGAGGATATCAATCACCTCTTCTTCTATTACTCTTTCATCAAGCAAATCTGGGATCTGATACTAGACATTTTGGGAGTTGACTAGATTATGCCAAGGACAACCAAGGAGCTGTTGCGATGCTGGTACACCATACATTAAAGGGATGGAAAAGGCAAAAATAAAGTAAAAGTTGACATGAAGTGAAGAAATGATTACACATTTTTTAATTAAGAAATTATAAAATATAGTAGAATTCATAACTTAAGCATTTTAAACAGTAAATTCTTGCCATTCAATATAGTGCTGCTACCATTATGCTTGCAACTTAAACTTTGATCTGCTCTCCAACGTGCTCATCTGTCAATTAACTCGTAGGATTTCTCCATTCCCGACAAATAAGATGTCTATTACCTCTATAAACACTGTTTGGTTTTTAAAAATCAGTTGACCGCAAGCATATTAGAGTGTCTCCAATATGCAAGAAGTTCTGATCCATTGAATATGACCTATAATTTTAGATATCTTGCCCATCAGTGAGACTGTTATTTTGCATAATTGATCAGCTGACAGTTGAGTGAATGAGATTTTTAAGGTTGTTTGTCAAGGATGTTCATACGACCTATCTTTAAAATATGTAAAAGTCACATCTCCAACTTCATTGTGCCTGGCTTCACATTTCTTTGATGGCTTGATGCTTCTCTTGTATATTCACAGCACAACATTTGATTGACAGCGCCAAGTGTGTTTTTTCGTTAGAGTATCTCCTTTGTCTTCTTATATGATGCGTGGCCTGTCTGTATTTGAACCCTTGGCTACATTGTGAATTGTCTTGTTTGGTGCACAAATGTGGATTTGGCTTATATTGGTTGACTTGGTTCCTTAGAATTATCTGCTAAATACGTGCTAGAAGTGCATATATTGATCTCTTGTTCGTTTTATGTTTATATTAGCTACTCTTCTTTCCCTAGATACTTTGTTTATGCCATATTTAAGCTGTCAAACAATTGCAGGTTATACTTTAAGACATCTTCATGAATCAAGAGTTGATCAACGGCTTGAATCTATAGAGAAAGCTGTAAGTACTCATTGCAGAATAATGTTGTCCCACAAATATTTTACTATTTCTGTTCAAAAGAATAAGGTGTGTACTACACAAGAGAATTTGTTGGAGTGCAATATAGAAGGGGTGTAGGCTTGTTGGTATTAATTCTTCAACAATATGCCCTTACAAAATAGTGTAATTATTTTTTATACAAATAAGTGCAATTAAGTACATGAAGTTTAAAAATAAATTTATTACAACCTAAAATTATTTGTGATCGAGTGTCGCATAAAACCTTTGAGTAGTTCTTTTTTTATCCCCAAGGCAATGAGAAGATGTGGCAAAGTTGTCTTCTTTGGGTAATTTGTAATTAGAGTACACATGGAACTTGACCTTCTCTACATACTATGGATATGGACCGAATTGTTTAAGATTTATTGTTAAGCATGGCATGGAGTATGGAATGTGGAGTTAACTAAGTTTTACATGTTCGCCAGCTTGTGTTACCTTCTTCTTCTTCTTTTTTTGTTGAGAAGGTATCATTTGTGAATTTTCACTGAACCAGTACATGGGTTGCACTGAAAACCATGTTTACTCGTCAAAAATGTAAGAAAAACAAATCTAAATTCTAGCAGGAACCTAGGATATCTATAATGGATTCAGTGTTCTCTAAATACATCTGTTTGCACCAGAAGCAAAAAAGTCTGATACAATTTTGTTTTGATCTTTTGAAGATCATAACTCTTGCTCTCATAATATCTAGCATTTCTTTCTTTTCGAACAGTCTACCATATACAGGCTGGGGCAATCCTCCATCTATCTATATCTGCAGCTCCCACCCACTTCTCCCCAGCTGTACAAAAGATGTGTGATTTTGTTAGGCATAGCCCAAGCAAAACCCATGAGACTAATGAAAAGCCTCCACAACTGATAAAGCAATAATATTTTATGAATGAAGGTCAAAGATACATGCATACAAGGAGTGTACCAAAAAGTAGAAAATTTTACAGAAGGATGCTATGACAAACACTCAATTTTCTATACATTGTATACTCACCTTCCTAGCAGCCTTAGGCAACCCGCCTCCTAGAAAGCCGCAAGTCACTCAATGCTTCTTATAGGAACGCCAATGGTTGGGCATGCAGAAGGATAAAGTGGGGGCTGGCCTGGCCAAAGTAATCTGATGATTACAAATATCAAAGATTTTACTTCAAGACTCTCAATTTTTTTCCGCCGATCACTTCCTTTGTTTCTTGACTCCGTTGTGATCATGTTTGTTGTCACCCCACAACTGGTACTTCTCCATTCACCTGTATCTAGTTTGTTCTCCTACCTCTATTGGCCAAACCACTTGTTCTCCAATATCCACCACCATCCCCTCATGTTTGCTTTCAACTGCTACAAATTGATTGTACTCATGTAAGAAAAAATAAAAAATAAAACCCTGAATGAATTATCATAAATAATTTGCCACATTGCTTTGTTTCCTGGAAAAAGAAGTACAAAATGAATGTGGCATAGGCAGATGTCCACAAATGTGACTCTACTAAAATCTGGTGCATAAGTGGGACGAGGGTAGAGGGGCAGGCCCACACTCCTACTGGTTTGACCTGTGCTCTAACTTTGATATTGGTCAGCTAACCAACTAAGCAAGGGTTTCTTTGTTATCCCAAAATAAAACGTTAGAGTGAGTAGTCGAACATCAATATATAGGTTATTTCCCTGAGTATCCTTGTCAACATGTTGTTCAGCTCCAAAACAACCACTGATTCCTTATTGCATGGTTTTTTTTTTTACCAGAATAGGTTAGTTTCGGAAGTTTCATTTTGCGGTCTCTAAAGGTTGGCTCTCTGTGGCAATGGAGTACCAAGATCTTAATATCTCAAGATCTTAATATCTCATGGAACTAAGCTTTATGAACATGGAAAAAGGAAAAGAAGTGCTAACAAAAGGGTCTTTGGGGATGCTGGGTTGGGTGGCACTTAAAGGGGTTTGTGGGACAGGTTACTGAAGCTTCAGCTGGGAGTAAAATCATTTGGGTACTCTCACACAGTGTAGTCAAAGGCGCGCTTAAGCCCCTGAAGCGAGGCTCAAAATGTGTTGAGTGCTTTGCCTCGCTTTATGTGCACATCAATGTTTTCATAAAGGCTCTAAGGCAAACTTTTCCTTGCCAATGAGTCTCTTCTGATGAAGTGGCACTAAACAGTGATATTTCACTTTATCAGCAAAAAATTCACTTTTTTTGGTCCTATATTTGTTCTCCCTTTGCACCTTTTTCACTAAAGCCCATATTTTATTTGCACTTAAAGCTCCCATGAACCTTCAAGCTTTTTTGCGCTTTTCGCCTTTGATAACACTGCTCTCACATGATCAGTCTTATTCTAGCAGTTTCCATGGACCACATTGGTTTTCTTATGTGCCACAAGCAATACTTCTAAGTTTTATTAGCTCTTAAGATGACCTTTTTATCTGGCAGATGAAGAAAGATTATCAGATTGAAGATCCTGAATTTAAGAAGCTTGTGTCTGGATCCATTAGTATTCCCGCTTGTGCTGCAACTGCTGGAACCACACTAATTCTCGGGTTTGTCATTTTTTCTTCTTAGCAGTTACCTTGTTCTTGTTCTATTTTTTCTTTTTTTCCCCTTCACCCAGCTTGTTAAGATACCCTTTTTCTTGTTCTATTCATTGCCCTATTGTCCTTCTATCATTTTAGTTTTTTCGTTGATAAGAAGTTCTCGTTGCTTCTTATATCAATGGGAAATTTTCAAATTTATTTTTAATGGTCAAAAATAGTCTAAACAAACACAGACTCGTTTTTACATCCCCTCTCACCATTATTGTTTTATTTTGTTATGCAGCTCTTCTTTCTATATAATTTTAGACATTTAGAAACTTTTGTCGAAAAAAAAAGCTAGAAAGGTGTCCTCATCAACTGTCATAGAAAATATCAAGAGCTCAAAACCTGATTTGGTACACATGCGGCATGCCCTTTGATCTGCTTTTTGTGCCTTTGATTCAGGTATGGCTTGGGTTTTCGAGGTGGAAAATGGTACGCAAACAGAAATTTTAGAAGAGAACAGATGAAATTGTTGGGACAAATAAAACCTAAAAGATGGCCACTAAGGTTTTTACGACGACCACTAATAAGGTCTAAATCGCCAGAAAATCTTGTTACTGCATCAGAAACATTACCGAAGGTTGCATCTACTTCCCACAGTGGAGGATAATCCCCTAACTTGCTGACAAAACGAGGTCCAATGGCTAA-TTTTTTTTTTTGGTTCTGTCGAAATTACTGCTAGTACAGAAAAGCCGTGTAGTTTATCAAATGTTAATAACCATATTATTGTTTATAATACCTTGTCATCGGACTGTGTTTTCTTATTTCTTAATTACCAATCAGGGTTTGAAATCTTAA</genome_strand>
        <mrna_strand>ACTTTGCCCATTCCGCAAGTTAATCACTCTGAACTGAAATCTGTTTGAG...............................................................................................................CCATGTACATTTACAGAGGTTTGAAGCGGTTTAGAATCTCTGATTCATCAATTGTTAATCGTCTAACAGTGCCTCAGTTGAAAAGAAAAGCTTCTAATTCATGGTCTGCTATTCAGGACACTTTTTATTCAACAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACTTTAAGACATCTTCATGAATCAAGAGTTGATCAACGGCTTGAATCTATAGAGAAAGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGAAAGATTATCAGATTGAAGATCCTGAATTTAAGAAGCTTGTGTCTGGATCCATTAGTATTCCCGCTTGTGCTGCAACTGCTGGAACCACACTAATTCTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCTTGGGTTTTCGAGGTGGAAAATGGTACGCAAACAGAAATTTTAGAAGAGAACAGATGAAATTGTTGGGACAAATAAAACCTAAAAGATGGCCACTAAGGTTTTTACGACGACCACTAATAAGGTCTAAATCGCCAGAAAATCTTGTTACTGCATCAGAAACATTACCGAAGGTTGCATCTACTTCCCACAGTGGAGGATAATCCCCTAACTTGCTGACAAAACGAGGTCCAATGGCTAATTTTTTTTTTTTGGTTCTGTCGAAATTACTGCTAGTACAGAAAAGCCGTGTAGTTTATCAAATGTTAATAACCATATTATTGTTTATAATACCTTGTCATCGGACTGTGTTTTCTTATTTCTTAATTACCAATCAGGGTTTGAAATCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-abkjJV/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323465" ref_strand="+" ref_description="SGN-U323465        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | cleavage and polyadenylation specificity factor, putative, similar to cleavage and polyadenylation specificity factor 73 kDa subunit (Homo sapiens) SWISS-PROT:Q9UKF6 | chr1:22478382-22481396 REVERSE | Aliases: T7P1.15, T7P1_15(evalue: 0, score=1109) genbank/nr: gi|24415578|gb|AAN41458.1| putative cleavage and polyadenylation specificity factor 73 kDa subunit [Arabidopsis thaliana] >gi|23297661|gb|AAN13003.1| putative cleavage and polyadenylation specificity factor [Arabidopsis thaliana] >gi|12323330|gb|AAG51638.1| putative cleavage and polyadenylation specificity factor; 72745-70039 [Arabidopsis thaliana] >gi|15219848|ref|NP_176297.1| cleavage and polyadenylation specificity factor, putative [Arabidopsis thaliana] >gi|30696512|ref|NP_849835.1| cleavage and polyadenylation specificity factor, putative [Arabidopsis thaliana] (evalue: 0, score=1109)">
      <seq>gctctgcgatttcaaatggcatctacgggacagccacagtcttcgttaaagagacctagtcctggagttaatagagacggagataaactggttatcacccctttaggggctggaaatgaagtgggacggtcctgtgttttcatgacttttaaagggaaaacaatcatgtttgattgtggcatacatccgggttactcaggcatgtctgccttaccatattttgatgaaattgatccttcatctattgatgttcttcttgttacccattttcacttggatcatgctgcatcccttccttattttcttgaaaagactacatttaaggggcgtgttttcatgacacatgccacaaaggcaatatacaagttgcttttgtcaaattatgttaaagttagcaaagtctctgttgaaaatatgttgtttgatgaacatgacattcttcactccatggaaaaaattgaggttatcgacttccatcaaactatggaagtaaatggtattcgcttttggtgttatactgctggccatgtccttggtgctgccatgtttatggttgatattgctggtgttcgagttctctatacaggagactattcccgtgaagaagacaggcatctccgtgcagctgagatcccacaattttctccagatgtttgcattatagaatcaacttatggtgttcaactccatatgccccgtcagataagagagaagcttttcactgatgtcatacattcaacactgatgcaagggggtcgggtgctgattcctgcttatgccttgggacgtgcacaggaacttctccttatcctggaggaatattggtctaaccatcctgaactagctaacttccccatatattatgcttctccacttgcaagaaggtgcatggctgtctatcagacttacatcaatgccatgaatgaaaggatccgcaatcaatttatcagcgcaaatccctttaattttaagcatatatcttccctgaacagtattgaagattttatagacaacaagccatgtgtggtgatggcaagtccaggtagtcttcaaagtggtttgtcgaggcaactgttcgataaatggtgctctgacaagaaaaatgcgtgtgtcatacctgggtatgtagtggaagggaccttggctaagactatcatcaatgaaccaaaggaagtcactctcacaaatggcttgtctgctccacttaatatgcaggttcattatatttcattctcagctcacgcagattatgctcagacgagttccttcttgaaagaacttatgcctcccaacataattctagtccacggagcatctaatgagatggatagactcaagcagaaacttacctccctctttgctgatgggaatactaaaataatcactcccaagaactgccagtcagttgaaatgcacttcaactctgataaaatggccaaaactattggaaagctggctgaaaagacccctgaagtgggcgaaattgtcagtggtttacttgtgaagaaaggtttcacttaccagatcatggcacctgatgatctccatgtcttttctcagctatccactgcaaatgtcacacagagaataactatcccctattcaggtgcttttgctgttatacaacacaggcttaagcagatctatgaaagtgtagagtcctcaacagatgaggaatctggtgtaccaactttgcgggtgcatgagcgagtgatggtgaagcaggaatcagagaatcatctctccgttcattggacagcagatccaatttgtgatatggtatctgactccgtggtggcattggttctgaatgccagcagggagatgcctaaagtatcaattgactcggaaactccccttaatgaggaagaagatgcaaagaagactgagaaaatagtccatgcactcctggtttctatgtttggtaatgtgaaagttggggacggtggtaagctggttatcaattttgatgggattttggctcatctggacaaacaaactggtgacgtcgagtgtgaaaatgaagctctcaaggagagagttaagactgcatactggcgaattagaagtgcagtgaagccaataccgctttctacatctcagcctcttgtattatcttttgtaaccgtgttaagagtttctatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0048D18-Z3ZB2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0048D18.1" temp_strand="+" temp_description="C07SLe0048D18.1  AC217337.1 htgs_phase:2 submitted_to_sgn_as:gi|167472504|gb|AC217337.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0048D18, *** SEQUENCING IN PROGRESS ***">
        <position start="18780" stop="26517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19092" g_stop="19245" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="168" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19246" i_stop="19329" i_length="84">
            <donor d_prob="0.531" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19330" g_stop="19427" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="266" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19428" i_stop="21092" i_length="1665">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21093" g_stop="21138" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="312" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21139" i_stop="21220" i_length="82">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21221" g_stop="21370" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="462" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21371" i_stop="24532" i_length="3162">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24533" g_stop="26217" g_length="1685"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="2147" r_length="1685" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0048D18.1" gen_strand="+" ref_id="SGN-U323465" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2133</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0048D18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19092" e_stop="19245"/>
          <exon e_start="19330" e_stop="19427"/>
          <exon e_start="21093" e_stop="21138"/>
          <exon e_start="21221" e_stop="21370"/>
          <exon e_start="24533" e_stop="26217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCATCTACGGGACAGCCACAGTCTTCGTTAAAGAGACCTAGTCCTGGAGTTAATAGAGACGGAGATAAACTGGTTATCACCCCTTTAGGGGCTGGAAATGAAGTGGGACGGTCCTGTGTTTTCATGACTTTTAAAGGGAAAACAATCATGGTAGGCTTTGTCGTTCTTCTACGAAAAATATTTTCTTGGCCACAAGATCTGAACTTGATTAATTACTTTTGATGTTTTTTGCAGTTTGATTGTGGCATACATCCGGGTTACTCAGGCATGTCTGCCTTACCATATTTTGATGAAATTGATCCTTCATCTATTGATGTTCTTCTTGTTACCCAGTAAGTTTTCTGTGCCAGATCTCAGTTATATGATGCTTGTTTTATTGTTTGGGATATTGTATCTCAATTGGACACTGCAGCACAAGTTTTTCTCTTTTCTTTTTCCAAGCATCATTTGATGACTGGCTACCAATTTCTATTTCGTTTTCTTCATTTTGATTTCTTTCTTGGTGGGCAATTTTAAATGTTGATATCTTGGTGTACTGCTTTAAATGTTGAGTGTTAGATGCATTTCCATAATTTTGGTCCAGATTGGATTAGTTTCTCTATATTAAGAGTTAAGACGTTATTTCTCTTATCTCTGCTTCTCAACTTGTCTGTGCGAATGTCTGAGGAAGAGAAGACATGTTCAGGTAGTATCTATTATAGGAATGTGAAACATTATGCTGATTATCCTTTTGATTATTGATCCAAGCAAAACACCAGGCGATTCTTTCCATCTGTTCCTAGCTTTGGTGGACAAAATTACCTGGTATCTTTTGTGGGTGGAACATGACAGGTATCCCGTCGTACTAGGCTCTCATACCACGGTCATAAAAATTAAAAAAAATAAGTAATAATAGAAGACCAGGAGGAAAGAAGAAGTGAATGTTTGTATGAGGAAATTTTCTTTCACATTTAGAGGTATAAATCCATACTAAGACTGAAAGTTTTTGAACGAACACAACCCTTCATATAAGAAGTTATCGGTGCATTTGCAACCTTTGTAAGGATGCGTCATTTTGTTTGCCCTTTTCGATAAGGACAGGGTTTTGTTTTTTAAATAAGGTATTTTTAGGCTTTAAAAGGATCTTTTGATAATTTTACTTTCAAGTTTAGGAGTCATGCTTTTAATACAACATACATGTTGGATGGGCACAAATATCTATTGGTTTGAAGTACTTAGTTGACTCGTTTATAAATGGTTCAGACAGGGAACAGATGCATCAAAGTCATTGAAGAGTGATTAAAAGGAATGGCCATAGTTAGAGAAAAAGAATCTTGGATCACAATTCTTCTAAGTGTTGCCCACCCGGCCAATTGCTAAACATATCTTTCTGTTATTGAGTACAAAATTGTGGGTTTGATTATTCTTATATATTTGTTAAGGTTAACATTTTTTAGATATGCAACATCACTTTGAATCTGCTGATGAAGCTTTACAAAAAGTGCAAGGCACTGAGCAGACCGGTGATATAATTTGTGTCATTTACAGAAGAAAGTCTGCACGAAAAGGCTAACAAAAAAAGGTTCTATTCTTAAGGCTGATTAGGTTGTTCCTTTTGCCTTCCGAAATTCTTCTATTCCTCTCTTCCCAGCAGTCCACCAAATGACAAGAGGAATAGTATTCCATAGTTTTGACTATTTTAGCAGTTGCTGGATAGAATAATTTTTTTTCCCACTATTTATTGTTATTGTTTAATTGAGCAGTGGGAGGACTAAGGAGTGGTTGAATGGTGTGGGCTGGATCAAGTTTCAGTTTATTATCTATTTTATGTGGTTCTGATTTTGAGCAACTTACTTGTGCACCCGTTAGTTGTCTCTGCAGTGGCCATCGAGTCCCTTGTCACGTGTTATAACTGTTGACCGTTCATTGATTGTTTCTTTTTTATTCTTATTTTATTGGTTTCTGTTCCTGTTTATCTTACTTGGCTACTCACTTTAACTTGTTCTAATGCTTTGCAGTTTTCACTTGGATCATGCTGCATCCCTTCCTTATTTTCTTGAAAAGGTTTATTCAGGGGTTCATGGTCTTTTTATTCTGTACATTTAGTACTTATTTGCTGGTTCATATGGGTTCTTTTTATGTTCAGACTACATTTAAGGGGCGTGTTTTCATGACACATGCCACAAAGGCAATATACAAGTTGCTTTTGTCAGATTATGTTAAAGTTAGCAAAGTCTCTGTTGAAGATATGTTGTTTGATGAACATGACATTCTTCACTCCATGGAAAAAATTGAGGTTTGTTTTCAACATCCCATGCTTAATCTTCACGCAGTTGTATGATTAGTCATTCGGATTATAGATTCATACTCTTGTGAGGTCTTGGTTTGAAAACAGGTTCTACACTGAACAACGTATTTTCACTCCATTACTAGTCTGTGTTGTACATCTGGTCCACATGTAGACCTCTTGGAAGTTCTTCTGTCTTGGATAACACTGTGGATATCTAGCCTTCTATTTATAAGCTTTTTGGAAGAAAAAACCCTTTTCTGTATAGGATTTTTTCAAGTCCTGCATAAGGTTTTATCCCTTGAATAATGGTTAATATTTAATAAGGTATAATTGTTGGTGTGTTTATATTGCCCAATTAATGTTTAGAGAAATATAGAAGATAAGAAAGATGTGGTTTTCTGCATATTTTTCATAATATTTGCAGATTCCCCTCATGTTTGCACATTGGATATGGCTTTCGACAACAAAAAAAAAACTTGTAATCAGGACTTTTGGAGGTTGCTTGGTCTAAGATTATGATATATGAGAGTACATGCTATCGAATTTCTAGGGTTGAATCATCATATTGTTTGATTTTCTATATTGATAGTAAATTGTAGCATTGTTGAACTAGTGTTTTGACAGACAGTGAGTTGTTGGCAAAGGTGATTATGATTGAAATTAGATAGGGCCTAGGGGTGGATTATCATATTGTTAGATTTGCTATTTTGATTGTAAATTTTAGCATTATTGAAATAGTGATATGACAGACAATGAGTTGTTGGCAGGGTGATCGTGATTAGATATTTTGATTGATCCATCAGATAAGAATGTCTCAATATTGATGGTTCAATTAAATATTCAGAATGACTGTTTAATAACTAGAACCTCTCAGTAATTATCACTAATTTTATTGGTCAGGCTTCTCTATAAAGAGCAGGCTTCTCTATAAAGAGCTTCCCTATGTGTACTTCTTTTCATTTAGGTTAAGCCGTTAAGCTCATTTAGTGTTAGCAGTATTTAGGGCATTCGGGTCTTTTCAACAGAAGAGGTGTTTATCTACACCTTTTTTACCATACACACCCGTATTTTCAGCTGCAGCACTTCTATCCAAACATGTAATTGGTTATTTGAAATTTCAGCTGCAGCATTAAAAGAAGTGTTTTTCAACACTTTGGTACTAAAGCTACTTAAAATCCGCTAAGCCAAACGGGCTCTAAGTCTAAATAGAACCAATAAAAATTTAATTTGATTTGTATTTCTTTTCCTGATTAGAACTAATTTGCTAAAGTAATAGATTGTGGTGGCCTGGAGAGTGAGGGGGTGTAGTGAAGGGAAGGGACGGTGGGGTGATAGTGAAACTAATTTGGTGGTGTGGTGGGAGCACGAACCCTAAAAAGAGTTTCCTTGGCCTACTGCCTACAAGCTGGATATGAAAGCAACTCAAATATATTATTTCTTCACCTGGATATTTGAATTCTGACTCTATTATTTGATCTCCTTGGACCATAATATGGTTGTGCTGCAGAAAATTTAATTCTATTGGACATTTTTGGCTTTCCCTTGTTTGCTGTCCTGAATGAGTGTTATGTGTAGCTTACACTAAATGGTCTTTTAGAGAAGCTATTGAAGTTTGACTGTGCTTTTCATTTAGCTGAAGGAGTCTTAGATCGTGCTTTGAATATGCTATTTGGATATAAGAAACATTATTCTTACTGAAACAAGAGGGATGGATCGGGCTTTGGATATGCTTTTGTATACCTCATGGAACATCTGCAACCTTGGAGAAATACATGTTTTATGAATGTCAGAGAGTATACACAGTGATGCACCTGCATCGTTAGCCTTGAACTACTCTTTTCTTACTATTTCCTGCTAAACAAAATTCTTCTTTTCCATCCTCAAAAAAGAATGAAGTTGAACCTTTTTCATTCTTTTGGAATTGTTATTGACCAGTTTGTTGTTGTTGAGCTCATTAGAACTATTGGCTTAGGTGCACCCGGGGCTTTGGTCTAGTGGTAAGAGCATAGCACGTGACGTGAATTAGGCACACATCATGGTTTCGAACATTACTGCAGAAAAAAGCCCAGTATATTAAGTGGAGAAGGATAGAGCGGCAGACCCATTACCCACCTAGTTCCAAACCTTGCTTCATGTCCTCAGGGAGTTCTCGATTATCACAAATAAGGAAGGAAAAAAAAGAACTGTTGTCTTAGGTTCTGTGAGTATGCTTATGTAGTTACATGATCTTCTTAGTTTATTTATGAGAGGAGAAACTAGAAAAGGGTGTTTGTGTCATAACCATGCAGCTATTTCTTGAATCGGTGTATTAGAACTCCTTACCCATTTGACCTTATCACAGAAACTACCAAGTCATTACTCTCATACTTCCATCATATTAGCTCTGATGTTTATTTTCTTGGAAATTTGAATTTTTTAGTCATGGTAATATTGTCTATGTCCTCCCATTAATAACCTTGTGGAATGATGGTATCTTTGCCAATTTGACTCCTTTTGTCTTTTATTAATAGTCAAAGATGCTTTTCAGATATTGAGGTAGAAGTGAAGTGCTATGGAGAATGATTTCTTCTAACAAGATTACAGAACGATAAAAATAGCAGACCTTTCTATTTGTTTACCAATGTACTAATGCCATGACCCTAGAAATGCTGTTGCTCTTGGACTGTAAAAGCAACGAAAACCAGTTCTAATTTGAAATACATTTTTTATGCTGGACACATCACGTTATCACCAAATGAGCAGATTATATTACCTTTTGCTTTTGTTTCTACATAAACATTACACTAGGAGTGAGGTGCTGGAGGGGGAAAAAAAAGGACCTCCCGGAAAATGGAAATGGAACAACCTTCTCCTTAAGCTCAACTTAAAAAGAAGAAAGAAATCATTTGTAGGGAATGGCACCAAATTTTTAATTTTTTCTCCCTTTGAGAGGAAAGAGAAGCATATCCTGATTATTAGATGTTTGTCATTCAGTGTTAACATGTTTTGAGTTTTTTCTTTTTTCTAATTTTATTTTTGGGGAACCATGTTCGGTGTAGGTTCACTTTTGTATACCACTTGTATTCTGGAATTTTCCCCACCATATCAATGAATTATTACTCATCATTTTTTAAATCAGACAATATATTTTGTTAAGCTTATTTTGGCATGTGAAAACTTCTTTTGTAGGTTATCGACTTCCATCAGACTATGGAAGTAAATGGTATTCGCTTTTGGTGTTATACTGCTGGCCATGTCCTTGGTGCTGCCATGTTTATGGTTGATATTGCTGGTGTTCGAGTTCTCTATACAGGAGACTATTCCCGTGAAGAAGACAGGCATCTCCGTGCAGCTGAGATCCCACAATTTTCTCCAGATGTTTGCATTATAGAATCAACTTATGGTGTTCAACTCCATATGCCCCGTCAGATAAGAGAGAAGCTTTTCACTGATGTCATACATTCAACACTGATGCAAGGGGGTCGGGTGCTGATTCCTGCTTATGCCTTGGGACGTGCACAGGAACTTCTCCTTATCCTGGAGGAATATTGGTCTAACCATCCTGAACTAGCTAACTTCCCCATATATTATGCTTCTCCACTTGCAAGAAGGTGCATGGCTGTCTATCAGACTTACATCAATGCCATGAATGAAAGGATCCGCAATCAATTTATCAGCGCAAATCCCTTTAATTTTAAGCATATATCTTCCCTGAACAGTATTGAAGATTTTATAGACAACAAGCCATGTGTGGTGATGGCAAGTCCAGGTAGTCTTCAAAGTGGTTTGTCGAGGCAACTGTTCGATAAATGGTGCTCTGACAAGAAAAATGCGTGTGTCATACCTGGGTATGTAGTGGAAGGGACCTTGGCTAAGACTATCATCAATGAACCAAAGGAAGTCACTCTCACAAATGGCTTGTCTGCTCCACTTAATATGCAGGTTCATTATATTTCATTCTCAGCTCACGCAGATTATGCTCAGACGAGTTCCTTCTTGAAAGAACTTATGCCTCCCAACATAATTCTAGTCCACGGAGCATCTAATGAGATGGATAGACTCAAGCAGAAACTTACCTCCCTCTTTGCTGATGGGAATACTAAAATAATCACTCCCAAGAACTGCCAGTCAGTTGAAATGCACTTCAACTCTGATAAAATGGCCAAAACTATTGGAAAGCTGGCTGAAAAGACCCCTGAAGTGGGCGAAATTGTCAGTGGTTTACTTGTGAAGAAAGGTTTCACTTACCAGATCATGGCACCTGATGATCTCCATGTCTTTTCTCAGCTATCCACTGCAAATGTCACACAGAGAATAACTATCCCCTATTCAGGTGCTTTTGCTGTTATACAACACAGGCTTAAGCAGATCTATGAAAGTGTAGAGTCCTCAACAGATGAGGAATCTGGTGTACCAACTTTGCGGGTGCATGAGCGAGTGATGGTGAAGCAGGAATCAGAGAATCATCTCTCCGTTCATTGGACAGCAGATCCAATTTGTGATATGGTATCTGACTCCGTGGTGGCATTGGTTCTGAATGCCAGCAGGGAGATGCCTAAAGTATCAATTGACTCGGAAACTCCCCTTAATGAGGAAGAAGATGCAAAGAAGACTGAGAAAATAGTCCATGCACTCCTGGTTTCTATGTTTGGTAATGTGAAAGTTGGGGACGGTGGTAAGCTGGTTATCAATTTTGATGGGATTTTGGCTCATCTGGACAAACAAACTGGTGACGTCGAGTGTGAAAATGAAGCTCTCAAGGAGAGAGTTAAGACTGCATACTGGCGAATTAGAAGTGCAGTGAAGCCAATACCGCTTTCTACATCTTAGCCTCTTGTATTATCTTTTGTAACCGTGTTAAGAGTTTCTATGCA</genome_strand>
        <mrna_strand>AATGGCATCTACGGGACAGCCACAGTCTTCGTTAAAGAGACCTAGTCCTGGAGTTAATAGAGACGGAGATAAACTGGTTATCACCCCTTTAGGGGCTGGAAATGAAGTGGGACGGTCCTGTGTTTTCATGACTTTTAAAGGGAAAACAATCATG....................................................................................TTTGATTGTGGCATACATCCGGGTTACTCAGGCATGTCTGCCTTACCATATTTTGATGAAATTGATCCTTCATCTATTGATGTTCTTCTTGTTACCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCACTTGGATCATGCTGCATCCCTTCCTTATTTTCTTGAAAAG..................................................................................ACTACATTTAAGGGGCGTGTTTTCATGACACATGCCACAAAGGCAATATACAAGTTGCTTTTGTCAAATTATGTTAAAGTTAGCAAAGTCTCTGTTGAAAATATGTTGTTTGATGAACATGACATTCTTCACTCCATGGAAAAAATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCGACTTCCATCAAACTATGGAAGTAAATGGTATTCGCTTTTGGTGTTATACTGCTGGCCATGTCCTTGGTGCTGCCATGTTTATGGTTGATATTGCTGGTGTTCGAGTTCTCTATACAGGAGACTATTCCCGTGAAGAAGACAGGCATCTCCGTGCAGCTGAGATCCCACAATTTTCTCCAGATGTTTGCATTATAGAATCAACTTATGGTGTTCAACTCCATATGCCCCGTCAGATAAGAGAGAAGCTTTTCACTGATGTCATACATTCAACACTGATGCAAGGGGGTCGGGTGCTGATTCCTGCTTATGCCTTGGGACGTGCACAGGAACTTCTCCTTATCCTGGAGGAATATTGGTCTAACCATCCTGAACTAGCTAACTTCCCCATATATTATGCTTCTCCACTTGCAAGAAGGTGCATGGCTGTCTATCAGACTTACATCAATGCCATGAATGAAAGGATCCGCAATCAATTTATCAGCGCAAATCCCTTTAATTTTAAGCATATATCTTCCCTGAACAGTATTGAAGATTTTATAGACAACAAGCCATGTGTGGTGATGGCAAGTCCAGGTAGTCTTCAAAGTGGTTTGTCGAGGCAACTGTTCGATAAATGGTGCTCTGACAAGAAAAATGCGTGTGTCATACCTGGGTATGTAGTGGAAGGGACCTTGGCTAAGACTATCATCAATGAACCAAAGGAAGTCACTCTCACAAATGGCTTGTCTGCTCCACTTAATATGCAGGTTCATTATATTTCATTCTCAGCTCACGCAGATTATGCTCAGACGAGTTCCTTCTTGAAAGAACTTATGCCTCCCAACATAATTCTAGTCCACGGAGCATCTAATGAGATGGATAGACTCAAGCAGAAACTTACCTCCCTCTTTGCTGATGGGAATACTAAAATAATCACTCCCAAGAACTGCCAGTCAGTTGAAATGCACTTCAACTCTGATAAAATGGCCAAAACTATTGGAAAGCTGGCTGAAAAGACCCCTGAAGTGGGCGAAATTGTCAGTGGTTTACTTGTGAAGAAAGGTTTCACTTACCAGATCATGGCACCTGATGATCTCCATGTCTTTTCTCAGCTATCCACTGCAAATGTCACACAGAGAATAACTATCCCCTATTCAGGTGCTTTTGCTGTTATACAACACAGGCTTAAGCAGATCTATGAAAGTGTAGAGTCCTCAACAGATGAGGAATCTGGTGTACCAACTTTGCGGGTGCATGAGCGAGTGATGGTGAAGCAGGAATCAGAGAATCATCTCTCCGTTCATTGGACAGCAGATCCAATTTGTGATATGGTATCTGACTCCGTGGTGGCATTGGTTCTGAATGCCAGCAGGGAGATGCCTAAAGTATCAATTGACTCGGAAACTCCCCTTAATGAGGAAGAAGATGCAAAGAAGACTGAGAAAATAGTCCATGCACTCCTGGTTTCTATGTTTGGTAATGTGAAAGTTGGGGACGGTGGTAAGCTGGTTATCAATTTTGATGGGATTTTGGCTCATCTGGACAAACAAACTGGTGACGTCGAGTGTGAAAATGAAGCTCTCAAGGAGAGAGTTAAGACTGCATACTGGCGAATTAGAAGTGCAGTGAAGCCAATACCGCTTTCTACATCTCAGCCTCTTGTATTATCTTTTGTAACCGTGTTAAGAGTTTCTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-abkjJV/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327266" ref_strand="+" ref_description="SGN-U327266        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT3G20310.1 | Symbol: ATERF7 | Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-7). The protein contains one AP2 domain. Phosphorylated by PKS3 in vitro. Involved in ABA-mediated responses. Acts as a repressor of GCC box##mediated transcription together with AtSin3 and HDA19. | chr3:7084812-7086811 REVERSE | Aliases: MQC12.13, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 7, ATERF-7, ATERF7 (evalue: 1e-16, score=84) genbank/nr: gi|50929507|ref|XP_474281.1| OSJNBa0043A12.18 [Oryza sativa (japonica cultivar-group)] >gi|32488388|emb|CAE02813.1| OSJNBa0043A12.18 [Oryza sativa (japonica cultivar-group)] (evalue: 2e-17, score=93.2)">
      <seq>cattgccaatctgctctgaatctgcaaacaaagcaaaatcatcttccatttcatggaaaatcggcaaaaaaattgaaaaaatacccataaaaatccaatcttgattctcaattcaccggccatgcgccaccggaagtcgtcggagctgaaaagaccaggatctgacctccttcaacagcctgacgccgacccacctcgttatcgaggtgttcgtaaacggccatggggtagattcgcagcagagattagagatccgattaaaaagactcgagtttggctgggtacctttgacaccgctgaagacgccgcacgcgcttacgacgatgctgcacgcgctctccgtggagctaaggcgaaaactaatttcaatatgttacctctaacagacgatccttatgatgatgagtttgagcttttccccaatcctagaccggcttctagcagtatgagcagtacgttggaatcatctagtgggcctcgtggcggatcgagtagtaaggtgacccggatgaagattcctcgcccagttcgtccgatggaggaatgccggagtgattgcgattcgtcgtcgtctgtggtggatgatcggtgtgatgttgatcaaacgtcatcgtttgtgaccaaacaacctctgccgttcgatctgaatctgccacctccgtcggataacgatggagttgatgttgatgatttgcacgtcaccgctttatgcctctnatttacccttctgttacggtgatgtttgttgttaattaatttgatgatgaagaaaaaagaaaaaaaaaaaggaagttcttttagttttcgttgtcaaatcttcttactttttttttcaatttttgctcggaaaattgatgtactcaaatggtggatgatgaaaaacaaaagggatttttagattatgtgtagataagtgtaatgagtcttgatgcgatctgtattaaaaaagatggtatctgtttttgtgtctgtttcacaaaaaactttggatctgatcttgagttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0048D18-Z3ZB2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0048D18.1" temp_strand="+" temp_description="C07SLe0048D18.1  AC217337.1 htgs_phase:2 submitted_to_sgn_as:gi|167472504|gb|AC217337.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0048D18, *** SEQUENCING IN PROGRESS ***">
        <position start="27271" stop="28875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27571" g_stop="28571" g_length="1001"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1001" r_length="1001" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1005" polyA_stop="1021"/>
      <MATCH_line gen_id="C07SLe0048D18.1" gen_strand="+" ref_id="SGN-U327266" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>1001</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0048D18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27571" e_stop="28571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCCAATCTGCTCTGAATCTGCAAACAAAGCAAAATCATCTTCCATTTCATGGAAAATCGGCAAAAAAATTGAAAAAATACCCATAAAAATCCAATCTTGATTCTCAATTCACCGGCCATGCGCCACCGGAAGTCGTCGGAGCTGAAAAGACCAGGATCTGACCTCCTTCAACAGCCTGACGCCGACCCACCTCGTTATCGAGGTGTTCGTAAACGGCCATGGGGTAGATTCGCAGCAGAGATTAGAGATCCGATTAAAAAGACTCGAGTTTGGCTGGGTACCTTTGACACAGCTGAAGACGCCGCACGCGCTTACGACGATGCTGCACGCGCTCTCCGTGGAGCTAAGGCGAAAACTAATTTCAATATGTTACCTCTAACAGATGATCCTTATGATGATGAGTTTGAGCTTTTCCCCAATCCGAGACCGGCTTCTAGCAGTATGAGCAGTACGTTGGAATCGTCTAGTGGGCCTCGTGGCGGATCGAGTAGTAAGGTGACCCGGATGAAGATTCCTCGCCCAGTTCGTCCGATGGAGGAATGCCGGAGTGATTGCGATTCGTCGTCGTCTGTGGTGGATGATCGGTGTGATGTTGATCAAACGTCATCGTTTGTGACCAAACAACCTCTGCCGTTCGATCTGAATCTGCCACCTCCGTCGGATAACGATGGAGTTGATGTTGATGATTTGCACGTCACCGCTTTATGCCTCTAATTTACCCTTCTGTTACGGTGATGTTTGTTGTTAATTAATTTGATGATGAAGAAAAAAGAAAAAAAAAAAGGAAGTTCTTTTAGTTTTCGTTGTCAAATCTTCTTACTTTTTTTTTCAAATTTTGCTCGGAAAAATGATGTACTCAAATGGTGGATGATGAAAAACAAAATGGATTTTTAGATTATGTGTAGATTAGTGTAATGAGTCATGATGCGATCTGTATTAAGAAAGATTGTATCTGTATTTGTGTCTGTATCACAAAAAACATTGGATCTGATCTTGA</genome_strand>
        <mrna_strand>CATTGCCAATCTGCTCTGAATCTGCAAACAAAGCAAAATCATCTTCCATTTCATGGAAAATCGGCAAAAAAATTGAAAAAATACCCATAAAAATCCAATCTTGATTCTCAATTCACCGGCCATGCGCCACCGGAAGTCGTCGGAGCTGAAAAGACCAGGATCTGACCTCCTTCAACAGCCTGACGCCGACCCACCTCGTTATCGAGGTGTTCGTAAACGGCCATGGGGTAGATTCGCAGCAGAGATTAGAGATCCGATTAAAAAGACTCGAGTTTGGCTGGGTACCTTTGACACCGCTGAAGACGCCGCACGCGCTTACGACGATGCTGCACGCGCTCTCCGTGGAGCTAAGGCGAAAACTAATTTCAATATGTTACCTCTAACAGACGATCCTTATGATGATGAGTTTGAGCTTTTCCCCAATCCTAGACCGGCTTCTAGCAGTATGAGCAGTACGTTGGAATCATCTAGTGGGCCTCGTGGCGGATCGAGTAGTAAGGTGACCCGGATGAAGATTCCTCGCCCAGTTCGTCCGATGGAGGAATGCCGGAGTGATTGCGATTCGTCGTCGTCTGTGGTGGATGATCGGTGTGATGTTGATCAAACGTCATCGTTTGTGACCAAACAACCTCTGCCGTTCGATCTGAATCTGCCACCTCCGTCGGATAACGATGGAGTTGATGTTGATGATTTGCACGTCACCGCTTTATGCCTCTNATTTACCCTTCTGTTACGGTGATGTTTGTTGTTAATTAATTTGATGATGAAGAAAAAAGAAAAAAAAAAAGGAAGTTCTTTTAGTTTTCGTTGTCAAATCTTCTTACTTTTTTTTTCAATTTTTGCTCGGAAAATTGATGTACTCAAATGGTGGATGATGAAAAACAAAAGGGATTTTTAGATTATGTGTAGATAAGTGTAATGAGTCTTGATGCGATCTGTATTAAAAAAGATGGTATCTGTTTTTGTGTCTGTTTCACAAAAAACTTTGGATCTGATCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-abkjJV/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330393" ref_strand="+" ref_description="SGN-U330393        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ctcaacgcaacacttgaaagaaaataattgttgtagcgaagaaggtctatgtaaaagataataattggaccagctctgcagtctccttttgtcaccttatatgttatcttgtgatggaccactcaacttcccagcaacagaacgacacaaattcttgttgaatgagttgtcctgaattcctttcagctggctatattcatcattaagcttggttcaagagcaagtggtcatccatctctagatggaatgcttcattcgagtatggaaattgctccagaggtaagccgttaatttttcaagtgaaatttattttcatgcgtcttttttcaaaaaatgagccttaaatgtgtcgtggtaagtttctgagatgtcttttttttaaagccaaagttaaactgcttttgttctgtggtaagaacttccgcttaatacctctctgagctgaaggaaaattattcaagtgtcctttgcagaatgacttgatgaagttaaaactctagattttgaaaaagtatatcattttcaagtttgaaattactttttttgagttaaagaaaaattctttttcatggattttgaagtgtcagtggtggaagttactaccctcacctgttatgaacttgtataatatattgtggtgtttgttatctgcctatgttattcaacattgaaggcttacaaatggtacttttgattagtaaaatgctttttaacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0048D18-Z3ZB2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0048D18.1" temp_strand="+" temp_description="C07SLe0048D18.1  AC217337.1 htgs_phase:2 submitted_to_sgn_as:gi|167472504|gb|AC217337.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0048D18, *** SEQUENCING IN PROGRESS ***">
        <position start="28739" stop="30063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29039" g_stop="29768" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0048D18.1" gen_strand="+" ref_id="SGN-U330393" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0048D18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29039" e_stop="29768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACGGAACACTTGAAAGAAAATAATTGTGGTAGAGAAGAAGGTCTATGTAAAAGATATTAATTGGACCAGCTCTGCAGTCTCCTTTTGTCACCTTATATATTTTCTTGTGATGAACCACTCAACTGCCCAGCAACAGAACGACACAAATTCTTGTTGAATGAGTTGTCCTGAATTCCTTTCAGCTGGCTATATTCATCATTAAGCTTGGTTCAAGAGCAAGTGGTCATCCATCTCTAGATGGAATGCTTCATTTGAGTATGGAAATTGCTCCTGAGGTAAGCCGCTAATTTTTCAAGTGAAATTTATTTTCATGCGTCTTTTTTCAAAAAATGAGCCTTTTAAATGTGTCCTGGTAAGTTTCTGAGATGTTTTTTTTTTAAAACCAAAGTTTAACTGCTTTTGTTCTGTGGTAAGAACTTCCGCTTAATACCTCTCTGAACTGAAGGAAAATTATTCAAGTGTCCTTTGCAGAATGACTTGATGAAGTTAAAACTCTAGATTTCGAAAAAGTATATCATTTTCAAGTTTTAGATTACTTTTTATGGGTTAAACAAGAATTCTTTTTCATGGGTTTTGAAGTGTCAGTGGTGGAAGTTACTACCCTCACCTGTTTATGAACTTGTATAATATATCGTGGTGTTTGTTATCTGCCTATGTTATTCCACAATGAAGGCTTACAAATGGTACTTTTGATTAGTAAAATGCTTTTTAACAAATACAAGTGTA</genome_strand>
        <mrna_strand>CTCAACGCAACACTTGAAAGAAAATAATTGTTGTAGCGAAGAAGGTCTATGTAAAAGATAATAATTGGACCAGCTCTGCAGTCTCCTTTTGTCACCTTATATGTTATCTTGTGATGGACCACTCAACTTCCCAGCAACAGAACGACACAAATTCTTGTTGAATGAGTTGTCCTGAATTCCTTTCAGCTGGCTATATTCATCATTAAGCTTGGTTCAAGAGCAAGTGGTCATCCATCTCTAGATGGAATGCTTCATTCGAGTATGGAAATTGCTCCAGAGGTAAGCCGTTAATTTTTCAAGTGAAATTTATTTTCATGCGTCTTTTTTCAAAAAATGAGCC--TTAAATGTGTCGTGGTAAGTTTCTGAGATGTCTTTTTTTTAAAGCCAAAGTTAAACTGCTTTTGTTCTGTGGTAAGAACTTCCGCTTAATACCTCTCTGAGCTGAAGGAAAATTATTCAAGTGTCCTTTGCAGAATGACTTGATGAAGTTAAAACTCTAGATTTTGAAAAAGTATATCATTTTCAAGTTTGAAATTACTTTTTTTGAGTTAAAGAAAAATTCTTTTTCATGGATTTTGAAGTGTCAGTGGTGGAAGTTACTACCCTCACCTG-TTATGAACTTGTATAATATATTGTGGTGTTTGTTATCTGCCTATGTTATTCAACATTGAAGGCTTACAAATGGTACTTTTGATTAGTAAAATGCTTTTTAACAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-abkjJV/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324472" ref_strand="+" ref_description="SGN-U324472        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | PAZ domain-containing protein / piwi domain-containing protein, similar to SP:Q9QZ81 Eukaryotic translation initiation factor 2C 2 {Rattus norvegicus}; contains Pfam profiles PF02171: Piwi domain, PF02170: PAZ domain | chr2:11543612-11549431 REVERSE | Aliases: T20P8.9, T20P8_9(evalue: 6e-77, score=284) genbank/nr: AGO4-1(evalue: 3e-76, score=288)">
      <seq>ggacttctataggacaagtaacaggcataagccagctcaaattattgtcttcagggatggcgtcagcgaatcacagtttagtcaagttctgaaccttgagctagatcaaatgatcaaggcatacaagcatcttggtgagggcggcaaccctaagttcaccttgatcgtggctcaaaagaatcaccatacaaaactatttcaagctaatgcagttgataatgtaccaccaggtactgttgtagacacaaatattgtgcatcctagaaataatgattttttcatgtgtgcacatgcggggatgattggaacaactaaacctgcacattatcatgtattgcttgatgagattggtttcgcacctgatgtcctgcaaaatctcatacattcactatcatatgtgtaccaaaggagtaccagcgcgacctctattgtggctcctgtgcgttatgcacacctagcagcacaacaattcgggcagtttgataagtacgaggaccactccgaaactttgtcagaacagggaagtgtcaaatcaattgggactactccggtaacccaactgcccaggctgcacaagaatgtcagcgactcaatgtttttctgttgaaaattgtaaagcttttaaatgcatatgctgtaaatccttagtagtttggtagtatagtacccggctccaaattttgtcgaggccttcggttagttaagtgctttaaggtcgtctaacaaggatcatgcttcgagtttgttttatttttttgacgtaattaagatagaaatttccccatttaaagggcatagaattttgggcgttgctccatttagctattttagaagttgaactgatttttgtatagtcaaagtttgtctaagtttggcgcttgatttgttaaaccgctggtctctttttagagtttaaatgactcagaaattgtgagccccccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0048D18-Z3ZB2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0048D18.1" temp_strand="-" temp_description="C07SLe0048D18.1  AC217337.1 htgs_phase:2 submitted_to_sgn_as:gi|167472504|gb|AC217337.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0048D18, *** SEQUENCING IN PROGRESS ***">
        <position start="40367" stop="32864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40067" g_stop="40014" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40013" i_stop="34777" i_length="5237">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34776" g_stop="34713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="118" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34712" i_stop="34453" i_length="260">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34452" g_stop="34341" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="230" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34340" i_stop="34255" i_length="86">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34254" g_stop="34181" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="304" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34180" i_stop="33967" i_length="214">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33966" g_stop="33872" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="399" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33871" i_stop="33790" i_length="82">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33789" g_stop="33758" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="431" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33757" i_stop="33669" i_length="89">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33668" g_stop="33170" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="930" r_length="499" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="942" polyA_stop="956"/>
      <MATCH_line gen_id="C07SLe0048D18.1" gen_strand="-" ref_id="SGN-U324472" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>930</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0048D18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40067" e_stop="40014"/>
          <exon e_start="34776" e_stop="34713"/>
          <exon e_start="34452" e_stop="34341"/>
          <exon e_start="34254" e_stop="34181"/>
          <exon e_start="33966" e_stop="33872"/>
          <exon e_start="33789" e_stop="33758"/>
          <exon e_start="33668" e_stop="33170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTTCAGGTACTCCAATATTCATGTTTGAAGTCAAAGTTGCATATGCTTTTATACATATGAGTAGTGACATATGTTGCTCGGACTCTCCAAAATGCTCCTGCACCCGTGTTGGATCCTTCAAAAATTCACTACTTCTCAAGGATCCCACACATACTCGAAAGCATTTTTGAAGTCGTAGCAACATAGTTCGTGACAGTTGCTAAGTCAAACAAAAAATTGTTGCTTTAACCACAAATTTTCTATCTAAGATATATAGGATGCTGCTTCATATGATTGCATAAAATCCTTTTAGTTTGCATGAAAGATGTGCCTTGTTGTAGGCATTTTTCTATTGTAAAATATTAGCAGTAATGTCATGCACATAGGCAACAAGATGAAAAAGTTACTCAGCCTCAAAAAAAGATGAAAAAGTTAAATCTTAATATTTCAAAATTCACATATATGTAATTTTTGTGGACAATAGAAGTAACATGTAGCCGTATTGGTTTATTCAAGGTGCAGTAAGCCAAGCTGGCATAGGCACCATATTTCAAAAGAAAGTTAATAGGACTGACTATCATAAAGCACACTATTACAAGGTCAAAGTTGGAGCCAATCATTCTGGATGAACTAAAACAAATCCAGAATCATATAGTTTCTCCCATGAGATGATGTGGGTTGCAGATCAGTGTTCTTAGATGTCATCTTCATATCTTGTCAATCTTGAAAGCCTTTTGATAGGAAAAATCATCTTCACCTGAGATAGATTGAAATAAAACATCTATTTCCTAAGCTGTGCAATTTGTTTTGGCAGAATACATTGGGAAGTGGGAACACCCCCATCCCCACCCCCTGAACTTGACACTATTTATTCTGTCCACCCTGAACAATTTTTGGTCCTAATTACCGCCCCTGAACTTGGTATTTTGATAATTTCAACCTCCTGGATGATCTCAATCCATGGAAGTCCTGTCATGACCCGTTTTCTAAACAAGCGGTAACTGGTACCTGGTGCCTTACATGCCGAGCAAAATCAGCTTGACAGTTCTAACCTGTACTTTGTTAAATTAACATCACATGCCCCATGTGCATTTAAAATAAATAACTAAACTTTTGGATCAATACTCTATTCCAATGATTTTTAAACAATCCAAAAATACATTCTGTAAACAAGTAGAAATTATTGAAAATGATGCCATGTAATGTGAACAAACATGACCCAACTGAAAACACGTCTATGAAGCCTTATTGGAGTACCAAGGGGAATGCACACGACATAGATTTCCTGGCCAATGCCAATCCCCAGAACAAATGCTGGATTAATGAATAAAAATTGTCTCCAAAAAAAAAAAAAGAACAAAAAATTTTCTAACTGAAAGAGGAGAAACTCCATGGTCAAGGTCAGAATTCACCAAATCAACTTCTGGAATAAAGCAACCTAGCTCGTAGTGTGCTTGTCTATGATCTTGTGTCTACATTGACCTAATTGACATAGGTCAATGCAGGTTCCACAAAGAGAACGTCAGCACGCTACTAGCGTTGCTCAATGAGTCTCAACATTCTGCTCACCAAAGTCAAAACAAGACCTTGAATAGAAACATGTGGGTAGTGAAGAGATAAGAGAGGAAACAAGGCATAACTGATCCTAAAGTACCATACAACAGTGAAGCAGGAAAACATAAAACTTATATCTTAGTTCATTTATTCATTCTTTTCACTTTCTTTAAAGTTGTTCCAGTCGACTAAACTTTTCTTGTGCCCAACTGTGACAACTAGTAACCCTTTATATGATTACTGGTGTCCCTTTATATGACCACCAATCTTATGTGCCTCGTTATGACAATATTAGCAACCATTTGTACAGTTGTTCGTGACCCTTTATTTTTTTATCAAGTAATAATTTTCACATTGATAGGGTGTAAAAAGTGCCCATCAAAAGGTAGAGAACCTTACAACGGAACATGGTTTTCTGCAAAAAAACCATCAAATTCTCTATACTTATTGGAACCTCATGGGTGCACCAAAAAGAAATAAGAGCAAAGAGACTGTTTGTCAAATAAGCAATTTTTTCTCTACACTCTCAAAAGATATCCTATTCCTCTCTCTATAGTCTATATGTCTATATGAGTGCCAAGCAACATCCCCTTCTCTGCTTCTCTCTTGTCTTCTAAGGGCCTAACTAACCATCGAGTCTTTCACAGTGCTCGACATTATCACTCAACTCTAAACCATCTTAGAATTTCTCTCCACAAAAGAAGATGCTAACCAATAATGTAATAAAAGGTGGTTATGTCTTCTCCAGATTCTTTACACATGAAACACCAACTGACAGAAGTGATCTTCTTCCTCAAATCATCTGCCATCAAGATTACCACCCTCATAGCTAACCAAGTGAAGAAACAAACTTTTTGAGGTACCCTGGGGATCCATACCGAACTTTGTGGAAAAGTCGATTCTTCCCTGCATGGGAGTTTCTCATAATAGTATTTAACAAGAGTATATGCTCCTAATTGCTACAAGGAAAAGAGGTTGGAATCTGATGTCATCTTCTTGAACTTTTGATCAAAATGATCGTTCAAGGTTCATAAGCTCCAAAAACACTAAAACTCGCACAATAACCAAACAAACGACCATGTGACCTAACTGTTAGTCCCAGCAAGTCATAGATGACTTGGGGTCGCTATAGGAAGACTCTAAACGACGCACAAAAGAAAAAACACAGAAATGACCAAGAGGGTCATTACACTCTTTCCGCAAACCAGGGTATCTTTTTTTCATTTCTTCTTCGGGTTTATATGTAGCCTTTTCTAATTGATGGTTACAACTTACACCACTAGACTTTTACTGACAGTACATCTTTGGTTCTAACCTGCGGACTTGCTTGTCAAGGATCTCTAAAGGTACTTATTCATACATTAAGCTCTCTTTAACCGAGGATAGTTTGGATGGAAAGTCTAGCTCGTAAGCCACCTTACTCATCTTGCTCAAAATTTCATAAGGTCCAACAAATCTAGGACTCAACTTTCCTTTCTTTCCAATTCTTATGACTCCCTTAATTGGTACATTCAAGAATACATAGTTACCTATTCACCTTCCTTGAATTCTAGATCCTTGTGCCTCTTGTCTCCATAAGACTCTTCGTGACTCTTAGCTATATATAAGGTATCAAGCTAGGTGAATTTTAACATTCTACTTGTTAAAACACAATGATCTCTAAATCTACAGTTAAGATCTTGTAAAGCTATGTTGAAGTTTTGATGATTGAAAAATTGTTCAAGTGACATTCACATGCTGAAGAAGAAGGATAGAAGTATCAAGAATCAGGTCCTCATAGATCTCCAAAGAAGTTACATAAAAAGCAACACTGCCAAAGGAACTCATCCAAGAACCTGCTCCTGTGAGTAGAGAAGGAGACTCTCTAAGAGAGAAGATTGAGACGGTTTACATGTGCACTAGATTTTCATGAAGAATGTAACTCTCCAAGGAACTGAAAAGGTATACAAGGAAAGTTACGATAAACTTGCACATGGAATTAGTTTTAAACAAGAAGTTGAAGAAGCAAATGTTAAACCAAGTCAAATTCGGATTGGATTCTCGGTGAATGTTGAACCAAATCTAACTTAGATTGGATATCAAGAAGCAGGGGTGGATTTAGGCGTAGGTAAGGTGTGTCACAGGACACGTCTTCGTCAATTTTTCTTACGAATTATACCTGTATAAAAAAAAGAAAAAAGAAATCTTAAAAGGTAAAACGTTAAAAAGGACATCCCTTCTATCAAAATGCTATTAGCTCAAGTGGCAAAGGCGCCACATTTGATTTCATACGTCCCAAGTTCGATTCCCTTTGGGACTACCTTTTTCTATGTTTTTATTGACTCCTTAAATCCTTATATTTGTGACTAGCGAGTTTCCTCAATTTTCTTTTTTGATCTTGTTCATCAATCATATCATTATTTGACATCTCAAATCTCTCTGCATCATGAAAGTATTTTTTGTTATTCTATTTTAAATTATTACTTGCTCAAATTTTTATTTTAGTTTGTTCATAATAATAATTTTATTTTTTTTCTATTGGCTTGTTACAAAGAAACAAGTTAGAATTCATTAAATTGATTACAATTGTCCGCAATCGTCTATTATTTGATCCTCAATTACTATGTGCAGATTACATTATATTAGTCTAAATTTAATGGGGAGTCTAATTTTAATGCATAGGTATTATCCTAAAAAAACATAAACTTTCAAAGTCAATCTTAACAACTCAAGCTTCCTGACTTGGGAGAATACGTCGATGAGACAAAAAGATATCAACGAAGTAAATGAATTGATTTAAGTAAAAATATCAACGAAGTAATGGAATCAATTTAAGTTCATTGCCGATTTATTTGCAGTACAATTGGTTGAATAATATTGTATAAAATTTTATTTAATAATATGAAGATGTAAAGTGGTTTAGTTTAAATTTTGAAATATTTTCTAATTTGAAGAGTAGGTAATTTTTTTAAATTAACCAAAATTTTATAATTTTAAGAAAAATATCATTTCATAAAGTTCACTATTAATGGAGCCCTCAAATTTTAGCCTATAGCAAAAGCTTCATTGATTTTCTTTTTGAGTCATTCTTGTCTCCTAAATGGTGACACCGCTTTGAAAAAATTCTGCGTACGCCACTGTCTTGTAGGCAGCGACTTACTCCTATATAAACAACACGTTAAACAAACTTTGGGGTTTGATCACATCCAAAGACAGAGTCCTCAGAGTGTTCCCAGTTCTACATGAAGAGTCTCGAAGAAGAAGTTGTTGCAACAAACAACCTGTTCCTATCAAGTTTATCTATACTGTTTTTAGTTTGTAATAGCTAGTTTCTTGAAGTAGTTACAAGGAAGGATCATTACATTCTTTTAGATTGTAGTAGGTGTTATCTTGAGTTGTGAAGGGTGGAAGGAGAAGAGTATAGGGTGTAGAGAAGACGGGATTGCTGGGAACAAGTCCTAAGGTGTTACAAGAGCGGTTGTAAACCTTGAGTTATAGTGGAGAATTGGATCCTGTTTTTTGATTCCTAAAGTAAGAAATTTTTCCAAATCAAATTCTTGTGTTGATTTACTTTCCGCGATTTACCTTCTTGCATAGTGAATTGAGGTTTATGTGGCTGAGATTTTTATAGCAGTCCCTTTTTCAAGTTTCTGTTTGCAATAACATGATGATTGTTCTTAGTTATTATATCGATAGCTGTTTGCAGTTGACATAACACTGTCCTTTGTTAGGGATGGCGTCAGCGAATCACAGTTTAGTCAAGTTCTGAACCTTGAGCTAGATCAAATGATCAAGGTAATGTCCTTTTTATCTGAAAAATGTTTATGCCTTATGTCGTTCTGATAAAGTCATACCTAATACTGCATCATAGAGTTATTTATCTTTATAGAAACGTTTAATTTCTTATCTTATGTTTTTCATGACACAAAATTAAAATGAATATTAGGATTTAATGCTTAAATTGAGGCATCTCTTAGGATCTGAATTCTATACATCATCCATCAGTTTTTAAGTTCCTGGATGTTTACTTTTAGTCTCGTATTTTCTGAAAACAGGCATACAAGCATCTTGGTGAGGGCGGCAACCCTAAGTTCACCTTGATCGTGGCTCAAAAGAATCACCATACAAAACTATTTCAAGCTAATGCAGTTGATAATGTACCACCAGGTCTGTGACTTTCCAGCTACTCTTTTGATCTACTTCAACTTATGTGTGCTGAGGTATTATTTAAAATGCATTCTCTCTCCCCTCAGGTACTGTTGTAGACACAAATATTGTGCATCCTAGAAATAATGATTTTTTCATGTGTGCACATGCGGGGATGATTGTAAGTTACTCTAATCCCTTTATCCATCTGGTGTTTCCTAGATTTTGCCTACTTATCCTGGCGTATAGGACCTTCCCTAGTACATAATTAGTTGTTTCTTGTGTCGTTATGTGTTACCTGGGCTTTAAGTTTTTTTAATTTCATCTCCTTCAGTGCTTCACCAATATTAGAATAATATAAACTGATAATAATCTCTCTATAAATTTTCCTACAGGGAACAACTAAACCTGCACATTATCATGTATTGCTTGATGAGATTGGTTTCGCACCTGATGTCCTGCAAAATCTCATACATTCACTATCATATGTGTAAGCTGTCTGATTTGTAATCTATAAGTTATTATGATGCACTTTGCAAGTTTAATGTGAATAGTACTTTGTTGTCTTTCAGGTACCAAAGGAGTACCAGCGCGACCTCTATTGGTAATTCCTCTTATCCTGCATTAAATTTTTTGAATTATAGAATTAGCAAAATTAAGCAAATCATCCAACTTCATCCATTGTTGCTGCAGTGGCTCCTGTGCGTTATGCACACCTAGCAGCACAACAATTCGGGCAGTTTGATAAGTACGAGGACCACTCCGAAACTTTGTCAGAACAGGGAAGTGTCAAATCAATTGGGACTACTCCGGTAACCCAACTGCCCAGGCTGCACAAGAATGTCAGCGACTCAATGTTTTTCTGTTGAAAATTGTAAAGCTTTTAAATGCATATGCTGTAAATCCTTAGTAGTTTGGTAGTATAGTACCCGGCTCCAAATTTTGTCGAGGCCTTCGGTTAGTTAAGTGCTTTAAGGTCGTCTAACAAGGATCATGCTTCGAGTTTGTTTTATTTTTTTGACGTAATTAAGATAGAAATTTCACCATTTAAAGGGCATAGAATTTTGGGCGTTGCTCCATTTAGCTATTTTAGAAGTTGAACTGATTTTTGTATAGTCAAAGTTTGTCTAAGTTTGGCGCTTGATTTGTTAAACCGCTGGTCTCTTTTTAGAGTTTAAATGACTCAGAAATT</genome_strand>
        <mrna_strand>GGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGCGTCAGCGAATCACAGTTTAGTCAAGTTCTGAACCTTGAGCTAGATCAAATGATCAAG....................................................................................................................................................................................................................................................................GCATACAAGCATCTTGGTGAGGGCGGCAACCCTAAGTTCACCTTGATCGTGGCTCAAAAGAATCACCATACAAAACTATTTCAAGCTAATGCAGTTGATAATGTACCACCAG......................................................................................GTACTGTTGTAGACACAAATATTGTGCATCCTAGAAATAATGATTTTTTCATGTGTGCACATGCGGGGATGATT......................................................................................................................................................................................................................GGAACAACTAAACCTGCACATTATCATGTATTGCTTGATGAGATTGGTTTCGCACCTGATGTCCTGCAAAATCTCATACATTCACTATCATATGT..................................................................................GTACCAAAGGAGTACCAGCGCGACCTCTATTG.........................................................................................TGGCTCCTGTGCGTTATGCACACCTAGCAGCACAACAATTCGGGCAGTTTGATAAGTACGAGGACCACTCCGAAACTTTGTCAGAACAGGGAAGTGTCAAATCAATTGGGACTACTCCGGTAACCCAACTGCCCAGGCTGCACAAGAATGTCAGCGACTCAATGTTTTTCTGTTGAAAATTGTAAAGCTTTTAAATGCATATGCTGTAAATCCTTAGTAGTTTGGTAGTATAGTACCCGGCTCCAAATTTTGTCGAGGCCTTCGGTTAGTTAAGTGCTTTAAGGTCGTCTAACAAGGATCATGCTTCGAGTTTGTTTTATTTTTTTGACGTAATTAAGATAGAAATTTCCCCATTTAAAGGGCATAGAATTTTGGGCGTTGCTCCATTTAGCTATTTTAGAAGTTGAACTGATTTTTGTATAGTCAAAGTTTGTCTAAGTTTGGCGCTTGATTTGTTAAACCGCTGGTCTCTTTTTAGAGTTTAAATGACTCAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-abkjJV/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324591" ref_strand="+" ref_description="SGN-U324591        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | PAZ domain-containing protein / piwi domain-containing protein, similar to SP:O04379 Argonaute protein (AGO1) {Arabidopsis thaliana}, SP:Q9XGW1 PINHEAD protein (ZWILLE protein) {Arabidopsis thaliana}; contains Pfam profiles PF02171: Piwi domain, PF02170: PAZ domain | chr2:13979295-13983933 REVERSE | Aliases: T21L14.12, T21L14_12(evalue: 1e-97, score=352) genbank/nr: gi|50935599|ref|XP_477327.1| putative ARGONAUTE9 protein [Oryza sativa (japonica cultivar-group)] >gi|50509873|dbj|BAD32046.1| putative ARGONAUTE9 protein [Oryza sativa (japonica cultivar-group)] >gi|34395088|dbj|BAC84805.1| putative ARGONAUTE9 protein [Oryza sativa (japonica cultivar-group)] (evalue: 3e-103, score=377)">
      <seq>gatcccccgggctgcaagttcaaatgaacggcagggtccttgaagccccaaagttgaaggttggtaatggcgaagaggtcactccctgtgacggcaggtggaatttcaagaacaagcatcttttcaaccctgcacgaattgaacgctgggcagtggtcaacttctctgccaattgtgatacaagtcacctttcaagggagcttattagttgcggaaggagcaaaggcattcattttgagcgcccacatacactcattgaggaagatccccagtataggcgagctgggcctgtagttcgagtagaacagatgtttgaagagataatagctagactgcctggccatcctgatttcctcctctgtgtcttgccagagcggaaaaactcagagttatatggaccttggaagaaaaaaagtttgactgacttgggaattgttactcaatgtatctctccgttaaagatcaccgatcgatatctaacaaatgtgcttctcaaaattaatgctaagcttggagggaccaattcactgttggctatggaacatacctctcatctaccgcttattaaggacactccaacaatgatcctgggaatggacgtctctcatggatctcgtgttcaatcagatattccatcaattgctgcggttgtaggatccttatactggccattaatatccaagtataaggcagttgtgcgcagtcaatctccaaagttggaaattgtagaatccttatacaagcctttaccaaatggagacgatgaaggaatcatgagagaactacttctggacttctataggacaagtaacaggcataagccagctcaaattattgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0048D18-Z3ZB2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0048D18.1" temp_strand="-" temp_description="C07SLe0048D18.1  AC217337.1 htgs_phase:2 submitted_to_sgn_as:gi|167472504|gb|AC217337.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0048D18, *** SEQUENCING IN PROGRESS ***">
        <position start="42003" stop="39717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41721" g_stop="41669" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.736"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41668" i_stop="41582" i_length="87">
            <donor d_prob="0.920" d_score="0.76"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41581" g_stop="41519" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="116" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41518" i_stop="41172" i_length="347">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41171" g_stop="41058" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="230" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41057" i_stop="40972" i_length="86">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40971" g_stop="40806" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="396" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40805" i_stop="40732" i_length="74">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.200" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40731" g_stop="40619" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="509" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40618" i_stop="40525" i_length="94">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40524" g_stop="40387" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="647" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40386" i_stop="40299" i_length="88">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40298" g_stop="40168" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="778" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40167" i_stop="40080" i_length="88">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40079" g_stop="40017" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="841" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0048D18.1" gen_strand="-" ref_id="SGN-U324591" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0048D18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41721" e_stop="41669"/>
          <exon e_start="41581" e_stop="41519"/>
          <exon e_start="41171" e_stop="41058"/>
          <exon e_start="40971" e_stop="40806"/>
          <exon e_start="40731" e_stop="40619"/>
          <exon e_start="40524" e_stop="40387"/>
          <exon e_start="40298" e_stop="40168"/>
          <exon e_start="40079" e_stop="40017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAGAAAAGCAGTTGATTCAAATGAACGGCAGGGTCCTTGAAGCCCCAAAGGTAGCATCTGCACATTCTCTAATGACAGCGTCCATTAAAATTTTTAATTTCTTTTCTGACTTTACTTTATTATCCTGTAATCTCTAGTTGAAGGTTGGTAATGGCGAAGAGGTCACTCCCTGTGACGGCAGGTGGAATTTCAAGAACAAGGTGCATTTAACCGCATAACATTACCTTGTAGTATTATTATAAAAGAAATTACCTTGTAGTTTAGGATGTCAACTGCGAATATAATGAGACGTGACAATCATCTGTGGTTATCCTCTATAATTTTGTTACTACCTGGGGATCAACATTTTGAGAACTTGACTATGAAGGAAAGGACGAACGGTGGATATAAATTTTCCCCGATTATTCTCGTTCTGCGGATAGTCTTTTTGGGAAATTGAAGAAGGTTTTTATTATTACGTTACCTACTTTAGTGAGAATATTATAATGTTTACTGCAGTTTTTTGGTTGACCGCAAATTCCACTCTCCCTACCATTTTTACTTGTAGCATCTTTTCAACCCTGCACGAATTGAACGCTGGGCAGTGGTCAACTTCTCTGCCAATTGTGATACAAGTCACCTTTCAAGGGAGCTTATTAGTTGCGGAAGGAGCAAAGGCATTGTATGTAGTGTCACATTAATATCTTCAATTCTGTGCTTTGTTGCTGTGTATTCTGGGCTCAAATAGTTTCTTTTCCTGTCTATCAGCATTTTGAGCGCCCACATACACTCATTGAGGAAGATCCCCAGTATAGGCGAGCTGGGCCTGTAGTTCGAGTAGAACAGATGTTTGAAGAGATAATAGCTAGACTGCCTGGCCATCCTGATTTCCTCCTCTGTGTCTTGCCAGAGCGGAAAAACTCAGAGTTATATGGTAACGTACTATGTTAGTCCTGCTCATGCTGCTTTCAATATCCTATACTAATTTATACATTTAATAATGTCAAGGACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAGGTAATCTTTTGAATCTGCAATCAACGGTTAGGATATTTTCTACTGTCAGTTATTCTGAGTTGCGATAGTTTTTTCTTTTGCTTGTGCTTAAAAGCTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACCGCTTATTAAGGACACTCCAACAATGATCCTGGGAATGGACGTCTCTCATGGATCTCGTGTTCAATCAGATATTCCATCAATTGCTGCGGTTGTTCTTTTTCCCAAGATATTTTCTCTTTTCTTTGTCAATTGCATTGCAACTGATTTCCTATGCCTTCTTATCATGGTTCTTCCAGGTTGTAGGATCCTTATACTGGCCATTAATATCCAAGTATAAGGCAGTTGTGCGCAGTCAATCTCCAAAGTTGGAAATTGTAGAATCCTTATACAAGCCTTTACCAAATGGAGACGATGAAGGAATCATGAGGTGCACCTTTATATCCAAAAACATGTCAAGTCTTCTATGACAAATTATGTACAGAATCATTTAAATTTTACATGTACTTGTGCTGCAGAGAACTACTTCTGGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTT</genome_strand>
        <mrna_strand>GATCCCCCGGGCTGCAAGTTCAAATGAACGGCAGGGTCCTTGAAGCCCCAAAG.......................................................................................TTGAAGGTTGGTAATGGCGAAGAGGTCACTCCCTGTGACGGCAGGTGGAATTTCAAGAACAAG...........................................................................................................................................................................................................................................................................................................................................................CATCTTTTCAACCCTGCACGAATTGAACGCTGGGCAGTGGTCAACTTCTCTGCCAATTGTGATACAAGTCACCTTTCAAGGGAGCTTATTAGTTGCGGAAGGAGCAAAGGCATT......................................................................................CATTTTGAGCGCCCACATACACTCATTGAGGAAGATCCCCAGTATAGGCGAGCTGGGCCTGTAGTTCGAGTAGAACAGATGTTTGAAGAGATAATAGCTAGACTGCCTGGCCATCCTGATTTCCTCCTCTGTGTCTTGCCAGAGCGGAAAAACTCAGAGTTATATG..........................................................................GACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAG..............................................................................................CTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACCGCTTATTAAGGACACTCCAACAATGATCCTGGGAATGGACGTCTCTCATGGATCTCGTGTTCAATCAGATATTCCATCAATTGCTGCG........................................................................................GTTGTAGGATCCTTATACTGGCCATTAATATCCAAGTATAAGGCAGTTGTGCGCAGTCAATCTCCAAAGTTGGAAATTGTAGAATCCTTATACAAGCCTTTACCAAATGGAGACGATGAAGGAATCATGAG........................................................................................AGAACTACTTCTGGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6327" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6327" e_stop="5871"/>
            <exon e_start="2290" e_stop="2191"/>
            <exon e_start="794" e_stop="736"/>
            <exon e_start="456" e_stop="350"/>
            <exon e_start="204" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.949" e_score="0.983"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6327" e_stop="5871" e_length="457"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.831">
            <gDNA_intron_boundary i_start="5870" i_stop="2291" i_length="3580"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2290" e_stop="2191" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="2190" i_stop="795" i_length="1396"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="794" e_stop="736" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.927" acc_prob="0.949">
            <gDNA_intron_boundary i_start="735" i_stop="457" i_length="279"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="456" e_stop="350" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="349" i_stop="205" i_length="145"/>
          </intron>
          <exon e_serial="5" e_score="0.946">
            <gDNA_exon_boundary e_start="204" e_stop="1" e_length="204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6327" stop="5871"/>
              <exon start="2290" stop="2191"/>
              <exon start="794" stop="736"/>
              <exon start="456" stop="350"/>
              <exon start="204" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328659" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTTTCAAGAATCCCTCCACCCGGCCAAAACCAAAATTACTAGCACCGGTAGCTATAAAATCACCAAATCTAGCCTTAAATTCTCTCTTGACGCTTCTCCTTCTTCTATAGTCACTTCAAATCGGATCAAATCTAGGCAAAAGTTTCTCCTTTTTCCTCTTCTGGGTCGTTCTTGTTTTTTGTCGATTGAGGCGGACATAGTGAATCAGTTCAGCATGAGGAAGAGAGAGAGGGAAAACCCATGTGGTATTTGTGGGCATTATCACAAGTACGAAGAAGGGGAGCCTTGTGGGGTTTGTGGGCATCGAATGCCTACTGTTTCTGATATGGGTTCTACAATTCAAGTCAGTGCTTTTCCTTCTGAGATCTTGCCGGAGTTTCTGTTTTTGGGAAGCTATGATAATGCTTCTAGAGCTGAGCTTCTTAAGAGTCAAGGGATTTCTCGTGTTCTCAAT : ACTGTACCTGCTTGCCAAAATCTATATAAAAATTCCTTTACTTATCACTGCCTTGGTGATGAGCAAGATTTGCAGTTTGACGATGCTATCCAATTCTTAG : AACAATGTGAAAGGGATAGGGGCTCGTGTTCTTGTACATTGCATGTCAGGGAAAAGCAG : GTCACCTGCCATTGTAATTGCTTACCTGATGAAAAGTAGAGGCTGGAAACTTGCACAGAGCTATCAGTGGGTGAAAGATCGGAGGCCTTATGTCGACCTTAATCAAG : GGGTTTACCATCAACTAGAGGCGTATGAACAGAAGATGTTCGGATCACTGGAGAACCAGCCTGCATTTGGCATGCCGGTCTTTTCTTCTCCTGTGCTGCCATCATTGAGCTTTAACTACCCAAAGACCTAGTGATTCAGTTCAAATTCCAGCCTTCAACTTTTCTGGTGCTACATCAATTTTCGCTTGTCAAGATGTCGGCATT</gDNA_template>
            <first_frame> E  F  S  R  I  P  P  P  G  Q  N  Q  N  Y  *  H  R  *  L  *  N  H  Q  I  *  P  *  I  L  S  *  R  F  S  F  F  Y  S  H  F  K  S  D  Q  I  *  A  K  V  S  P  F  S  S  S  G  S  F  L  F  F  V  D  *  G  G  H  S  E  S  V  Q  H  E  E  E  R  E  G  K  P  M  W  Y  L  W  A  L  S  Q  V  R  R  R  G  A  L  W  G  L  W  A  S  N  A  Y  C  F  *  Y  G  F  Y  N  S  S  Q  C  F  S  F  *  D  L  A  G  V  S  V  F  G  K  L  *  *  C  F  *  S  *  A  S  *  E  S  R  D  F  S  C  S  Q   : Y  C  T  C  L  P  K  S  I  *  K  F  L  Y  L  S  L  P  W  *  *  A  R  F  A  V  *  R  C  Y  P  I  L  R :   T  M  *  K  G  *  G  L  V  F  L  Y  I  A  C  Q  G  K  A   : G  H  L  P  L  *  L  L  T  *  *  K  V  E  A  G  N  L  H  R  A  I  S  G  *  K  I  G  G  L  M  S  T  L  I  K  :  G  F  T  I  N  *  R  R  M  N  R  R  C  S  D  H  W  R  T  S  L  H  L  A  C  R  S  F  L  L  L  C  C  H  H  *  A  L  T  T  Q  R  P  S  D  S  V  Q  I  P  A  F  N  F  S  G  A  T  S  I  F  A  C  Q  D  V  G  I </first_frame>
            <second_frame>  N  F  Q  E  S  L  H  P  A  K  T  K  I  T  S  T  G  S  Y  K  I  T  K  S  S  L  K  F  S  L  D  A  S  P  S  S  I  V  T  S  N  R  I  K  S  R  Q  K  F  L  L  F  P  L  L  G  R  S  C  F  L  S  I  E  A  D  I  V  N  Q  F  S  M  R  K  R  E  R  E  N  P  C  G  I  C  G  H  Y  H  K  Y  E  E  G  E  P  C  G  V  C  G  H  R  M  P  T  V  S  D  M  G  S  T  I  Q  V  S  A  F  P  S  E  I  L  P  E  F  L  F  L  G  S  Y  D  N  A  S  R  A  E  L  L  K  S  Q  G  I  S  R  V  L  N  :  T  V  P  A  C  Q  N  L  Y  K  N  S  F  T  Y  H  C  L  G  D  E  Q  D  L  Q  F  D  D  A  I  Q  F  L   : E  Q  C  E  R  D  R  G  S  C  S  C  T  L  H  V  R  E  K  Q  :  V  T  C  H  C  N  C  L  P  D  E  K  *  R  L  E  T  C  T  E  L  S  V  G  E  R  S  E  A  L  C  R  P  *  S  R :   G  L  P  S  T  R  G  V  *  T  E  D  V  R  I  T  G  E  P  A  C  I  W  H  A  G  L  F  F  S  C  A  A  I  I  E  L  *  L  P  K  D  L  V  I  Q  F  K  F  Q  P  S  T  F  L  V  L  H  Q  F  S  L  V  K  M  S  A   </second_frame>
            <third_frame>   I  F  K  N  P  S  T  R  P  K  P  K  L  L  A  P  V  A  I  K  S  P  N  L  A  L  N  S  L  L  T  L  L  L  L  L  *  S  L  Q  I  G  S  N  L  G  K  S  F  S  F  F  L  F  W  V  V  L  V  F  C  R  L  R  R  T  *  *  I  S  S  A  *  G  R  E  R  G  K  T  H  V  V  F  V  G  I  I  T  S  T  K  K  G  S  L  V  G  F  V  G  I  E  C  L  L  F  L  I  W  V  L  Q  F  K  S  V  L  F  L  L  R  S  C  R  S  F  C  F  W  E  A  M  I  M  L  L  E  L  S  F  L  R  V  K  G  F  L  V  F  S  I :   L  Y  L  L  A  K  I  Y  I  K  I  P  L  L  I  T  A  L  V  M  S  K  I  C  S  L  T  M  L  S  N  S  *  :  N  N  V  K  G  I  G  A  R  V  L  V  H  C  M  S  G  K  S  R :   S  P  A  I  V  I  A  Y  L  M  K  S  R  G  W  K  L  A  Q  S  Y  Q  W  V  K  D  R  R  P  Y  V  D  L  N  Q   : G  V  Y  H  Q  L  E  A  Y  E  Q  K  M  F  G  S  L  E  N  Q  P  A  F  G  M  P  V  F  S  S  P  V  L  P  S  L  S  F  N  Y  P  K  T  *  *  F  S  S  N  S  S  L  Q  L  F  W  C  Y  I  N  F  R  L  S  R  C  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0048D18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6326" stop="5871"/>
                    <exon start="2290" stop="2191"/>
                    <exon start="794" stop="736"/>
                    <exon start="456" stop="418"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFQESLHPAKTKITSTGSYKITKSSLKFSLDASPSSIVTSNRIKSRQKFLLFPLLGRSCFLSIEADIVNQFSMRKRERENPCGICGHYHKYEEGEPCGVCGHRMPTVSDMGSTIQVSAFPSEILPEFLFLGSYDNASRAELLKSQGISRVLNTVPACQNLYKNSFTYHCLGDEQDLQFDDAIQFLEQCERDRGSCSCTLHVREKQVTCHCNCLPDEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14866" PGL_stop="7788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14866" e_stop="14818"/>
            <exon e_start="14706" e_stop="14570"/>
            <exon e_start="11236" e_stop="11172"/>
            <exon e_start="8728" e_stop="8622"/>
            <exon e_start="8183" e_stop="7788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14866" e_stop="14818" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.971">
            <gDNA_intron_boundary i_start="14817" i_stop="14707" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14706" e_stop="14570" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.978">
            <gDNA_intron_boundary i_start="14569" i_stop="11237" i_length="3333"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11236" e_stop="11172" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.977">
            <gDNA_intron_boundary i_start="11171" i_stop="8729" i_length="2443"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8728" e_stop="8622" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="8621" i_stop="8184" i_length="438"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="8183" e_stop="7788" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14866" stop="14818"/>
              <exon start="14706" stop="14570"/>
              <exon start="11236" stop="11172"/>
              <exon start="8728" stop="8622"/>
              <exon start="8183" stop="7788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325032" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTTGCCCATTCCGCAAGTTAATCACTCTGAACTGAAATCTGTTTGAG : CCATGTACATTTACAGAGGTTTGAAGCGGTTTAGAATCTCTGATTCATCAATTGTTAATCGTCTAACAGTGCCTCAGTTGAAAAGAAAAGCTTCTAATTCATGGTCTGCTATTCAGGACACTTTTTATTCAACAAAG : GTTATACTTTAAGACATCTTCATGAATCAAGAGTTGATCAACGGCTTGAATCTATAGAGAAAGCT : ATGAAGAAAGATTATCAGATTGAAGATCCTGAATTTAAGAAGCTTGTGTCTGGATCCATTAGTATTCCCGCTTGTGCTGCAACTGCTGGAACCACACTAATTCTCGG : GTATGGCTTGGGTTTTCGAGGTGGAAAATGGTACGCAAACAGAAATTTTAGAAGAGAACAGATGAAATTGTTGGGACAAATAAAACCTAAAAGATGGCCACTAAGGTTTTTACGACGACCACTAATAAGGTCTAAATCGCCAGAAAATCTTGTTACTGCATCAGAAACATTACCGAAGGTTGCATCTACTTCCCACAGTGGAGGATAATCCCCTAACTTGCTGACAAAACGAGGTCCAATGGCTAATTTTTTTTTTTGGTTCTGTCGAAATTACTGCTAGTACAGAAAAGCCGTGTAGTTTATCAAATGTTAATAACCATATTATTGTTTATAATACCTTGTCATCGGACTGTGTTTTCTTATTTCTTAATTACCAATCAGGGTTTGAAATCTTAA</gDNA_template>
            <first_frame> T  L  P  I  P  Q  V  N  H  S  E  L  K  S  V  *   : A  M  Y  I  Y  R  G  L  K  R  F  R  I  S  D  S  S  I  V  N  R  L  T  V  P  Q  L  K  R  K  A  S  N  S  W  S  A  I  Q  D  T  F  Y  S  T  K  :  V  I  L  *  D  I  F  M  N  Q  E  L  I  N  G  L  N  L  *  R  K  L :   *  R  K  I  I  R  L  K  I  L  N  L  R  S  L  C  L  D  P  L  V  F  P  L  V  L  Q  L  L  E  P  H  *  F  S   : G  M  A  W  V  F  E  V  E  N  G  T  Q  T  E  I  L  E  E  N  R  *  N  C  W  D  K  *  N  L  K  D  G  H  *  G  F  Y  D  D  H  *  *  G  L  N  R  Q  K  I  L  L  L  H  Q  K  H  Y  R  R  L  H  L  L  P  T  V  E  D  N  P  L  T  C  *  Q  N  E  V  Q  W  L  I  F  F  F  G  S  V  E  I  T  A  S  T  E  K  P  C  S  L  S  N  V  N  N  H  I  I  V  Y  N  T  L  S  S  D  C  V  F  L  F  L  N  Y  Q  S  G  F  E  I  L  </first_frame>
            <second_frame>  L  C  P  F  R  K  L  I  T  L  N  *  N  L  F  E  :  P  C  T  F  T  E  V  *  S  G  L  E  S  L  I  H  Q  L  L  I  V  *  Q  C  L  S  *  K  E  K  L  L  I  H  G  L  L  F  R  T  L  F  I  Q  Q  R :   L  Y  F  K  T  S  S  *  I  K  S  *  S  T  A  *  I  Y  R  E  S   : Y  E  E  R  L  S  D  *  R  S  *  I  *  E  A  C  V  W  I  H  *  Y  S  R  L  C  C  N  C  W  N  H  T  N  S  R  :  V  W  L  G  F  S  R  W  K  M  V  R  K  Q  K  F  *  K  R  T  D  E  I  V  G  T  N  K  T  *  K  M  A  T  K  V  F  T  T  T  T  N  K  V  *  I  A  R  K  S  C  Y  C  I  R  N  I  T  E  G  C  I  Y  F  P  Q  W  R  I  I  P  *  L  A  D  K  T  R  S  N  G  *  F  F  F  L  V  L  S  K  L  L  L  V  Q  K  S  R  V  V  Y  Q  M  L  I  T  I  L  L  F  I  I  P  C  H  R  T  V  F  S  Y  F  L  I  T  N  Q  G  L  K  S  * </second_frame>
            <third_frame>   F  A  H  S  A  S  *  S  L  *  T  E  I  C  L  S :   H  V  H  L  Q  R  F  E  A  V  *  N  L  *  F  I  N  C  *  S  S  N  S  A  S  V  E  K  K  S  F  *  F  M  V  C  Y  S  G  H  F  L  F  N  K   : G  Y  T  L  R  H  L  H  E  S  R  V  D  Q  R  L  E  S  I  E  K  A  :  M  K  K  D  Y  Q  I  E  D  P  E  F  K  K  L  V  S  G  S  I  S  I  P  A  C  A  A  T  A  G  T  T  L  I  L  G :   Y  G  L  G  F  R  G  G  K  W  Y  A  N  R  N  F  R  R  E  Q  M  K  L  L  G  Q  I  K  P  K  R  W  P  L  R  F  L  R  R  P  L  I  R  S  K  S  P  E  N  L  V  T  A  S  E  T  L  P  K  V  A  S  T  S  H  S  G  G  *  S  P  N  L  L  T  K  R  G  P  M  A  N  F  F  F  W  F  C  R  N  Y  C  *  Y  R  K  A  V  *  F  I  K  C  *  *  P  Y  Y  C  L  *  Y  L  V  I  G  L  C  F  L  I  S  *  L  P  I  R  V  *  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0048D18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14609" stop="14570"/>
                    <exon start="11236" stop="11172"/>
                    <exon start="8728" stop="8622"/>
                    <exon start="8183" stop="7976"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMVCYSGHFLFNKGYTLRHLHESRVDQRLESIEKAMKKDYQIEDPEFKKLVSGSISIPACAATAGTTLILGYGLGFRGGKWYANRNFRREQMKLLGQIKPKRWPLRFLRRPLIRSKSPENLVTASETLPKVASTSHSGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="19092" PGL_stop="26217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19092" e_stop="19245"/>
            <exon e_start="19330" e_stop="19427"/>
            <exon e_start="21093" e_stop="21138"/>
            <exon e_start="21221" e_stop="21370"/>
            <exon e_start="24533" e_stop="26217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.531" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.945" e_score="0.987"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19092" e_stop="19245" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="0.531" acc_prob="0.997">
            <gDNA_intron_boundary i_start="19246" i_stop="19329" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19330" e_stop="19427" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.964">
            <gDNA_intron_boundary i_start="19428" i_stop="21092" i_length="1665"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21093" e_stop="21138" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.929" acc_prob="0.992">
            <gDNA_intron_boundary i_start="21139" i_stop="21220" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="21221" e_stop="21370" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.945">
            <gDNA_intron_boundary i_start="21371" i_stop="24532" i_length="3162"/>
          </intron>
          <exon e_serial="5" e_score="0.999">
            <gDNA_exon_boundary e_start="24533" e_stop="26217" e_length="1685"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19092" stop="19245"/>
              <exon start="19330" stop="19427"/>
              <exon start="21093" stop="21138"/>
              <exon start="21221" stop="21370"/>
              <exon start="24533" stop="26217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGGCATCTACGGGACAGCCACAGTCTTCGTTAAAGAGACCTAGTCCTGGAGTTAATAGAGACGGAGATAAACTGGTTATCACCCCTTTAGGGGCTGGAAATGAAGTGGGACGGTCCTGTGTTTTCATGACTTTTAAAGGGAAAACAATCATG : TTTGATTGTGGCATACATCCGGGTTACTCAGGCATGTCTGCCTTACCATATTTTGATGAAATTGATCCTTCATCTATTGATGTTCTTCTTGTTACCCA : TTTTCACTTGGATCATGCTGCATCCCTTCCTTATTTTCTTGAAAAG : ACTACATTTAAGGGGCGTGTTTTCATGACACATGCCACAAAGGCAATATACAAGTTGCTTTTGTCAGATTATGTTAAAGTTAGCAAAGTCTCTGTTGAAGATATGTTGTTTGATGAACATGACATTCTTCACTCCATGGAAAAAATTGAG : GTTATCGACTTCCATCAGACTATGGAAGTAAATGGTATTCGCTTTTGGTGTTATACTGCTGGCCATGTCCTTGGTGCTGCCATGTTTATGGTTGATATTGCTGGTGTTCGAGTTCTCTATACAGGAGACTATTCCCGTGAAGAAGACAGGCATCTCCGTGCAGCTGAGATCCCACAATTTTCTCCAGATGTTTGCATTATAGAATCAACTTATGGTGTTCAACTCCATATGCCCCGTCAGATAAGAGAGAAGCTTTTCACTGATGTCATACATTCAACACTGATGCAAGGGGGTCGGGTGCTGATTCCTGCTTATGCCTTGGGACGTGCACAGGAACTTCTCCTTATCCTGGAGGAATATTGGTCTAACCATCCTGAACTAGCTAACTTCCCCATATATTATGCTTCTCCACTTGCAAGAAGGTGCATGGCTGTCTATCAGACTTACATCAATGCCATGAATGAAAGGATCCGCAATCAATTTATCAGCGCAAATCCCTTTAATTTTAAGCATATATCTTCCCTGAACAGTATTGAAGATTTTATAGACAACAAGCCATGTGTGGTGATGGCAAGTCCAGGTAGTCTTCAAAGTGGTTTGTCGAGGCAACTGTTCGATAAATGGTGCTCTGACAAGAAAAATGCGTGTGTCATACCTGGGTATGTAGTGGAAGGGACCTTGGCTAAGACTATCATCAATGAACCAAAGGAAGTCACTCTCACAAATGGCTTGTCTGCTCCACTTAATATGCAGGTTCATTATATTTCATTCTCAGCTCACGCAGATTATGCTCAGACGAGTTCCTTCTTGAAAGAACTTATGCCTCCCAACATAATTCTAGTCCACGGAGCATCTAATGAGATGGATAGACTCAAGCAGAAACTTACCTCCCTCTTTGCTGATGGGAATACTAAAATAATCACTCCCAAGAACTGCCAGTCAGTTGAAATGCACTTCAACTCTGATAAAATGGCCAAAACTATTGGAAAGCTGGCTGAAAAGACCCCTGAAGTGGGCGAAATTGTCAGTGGTTTACTTGTGAAGAAAGGTTTCACTTACCAGATCATGGCACCTGATGATCTCCATGTCTTTTCTCAGCTATCCACTGCAAATGTCACACAGAGAATAACTATCCCCTATTCAGGTGCTTTTGCTGTTATACAACACAGGCTTAAGCAGATCTATGAAAGTGTAGAGTCCTCAACAGATGAGGAATCTGGTGTACCAACTTTGCGGGTGCATGAGCGAGTGATGGTGAAGCAGGAATCAGAGAATCATCTCTCCGTTCATTGGACAGCAGATCCAATTTGTGATATGGTATCTGACTCCGTGGTGGCATTGGTTCTGAATGCCAGCAGGGAGATGCCTAAAGTATCAATTGACTCGGAAACTCCCCTTAATGAGGAAGAAGATGCAAAGAAGACTGAGAAAATAGTCCATGCACTCCTGGTTTCTATGTTTGGTAATGTGAAAGTTGGGGACGGTGGTAAGCTGGTTATCAATTTTGATGGGATTTTGGCTCATCTGGACAAACAAACTGGTGACGTCGAGTGTGAAAATGAAGCTCTCAAGGAGAGAGTTAAGACTGCATACTGGCGAATTAGAAGTGCAGTGAAGCCAATACCGCTTTCTACATCTTAGCCTCTTGTATTATCTTTTGTAACCGTGTTAAGAGTTTCTATGCA</gDNA_template>
            <first_frame> N  G  I  Y  G  T  A  T  V  F  V  K  E  T  *  S  W  S  *  *  R  R  R  *  T  G  Y  H  P  F  R  G  W  K  *  S  G  T  V  L  C  F  H  D  F  *  R  E  N  N  H   : V  *  L  W  H  T  S  G  L  L  R  H  V  C  L  T  I  F  *  *  N  *  S  F  I  Y  *  C  S  S  C  Y  P  :  F  S  L  G  S  C  C  I  P  S  L  F  S  *  K   : D  Y  I  *  G  A  C  F  H  D  T  C  H  K  G  N  I  Q  V  A  F  V  R  L  C  *  S  *  Q  S  L  C  *  R  Y  V  V  *  *  T  *  H  S  S  L  H  G  K  N  *   : G  Y  R  L  P  S  D  Y  G  S  K  W  Y  S  L  L  V  L  Y  C  W  P  C  P  W  C  C  H  V  Y  G  *  Y  C  W  C  S  S  S  L  Y  R  R  L  F  P  *  R  R  Q  A  S  P  C  S  *  D  P  T  I  F  S  R  C  L  H  Y  R  I  N  L  W  C  S  T  P  Y  A  P  S  D  K  R  E  A  F  H  *  C  H  T  F  N  T  D  A  R  G  S  G  A  D  S  C  L  C  L  G  T  C  T  G  T  S  P  Y  P  G  G  I  L  V  *  P  S  *  T  S  *  L  P  H  I  L  C  F  S  T  C  K  K  V  H  G  C  L  S  D  L  H  Q  C  H  E  *  K  D  P  Q  S  I  Y  Q  R  K  S  L  *  F  *  A  Y  I  F  P  E  Q  Y  *  R  F  Y  R  Q  Q  A  M  C  G  D  G  K  S  R  *  S  S  K  W  F  V  E  A  T  V  R  *  M  V  L  *  Q  E  K  C  V  C  H  T  W  V  C  S  G  R  D  L  G  *  D  Y  H  Q  *  T  K  G  S  H  S  H  K  W  L  V  C  S  T  *  Y  A  G  S  L  Y  F  I  L  S  S  R  R  L  C  S  D  E  F  L  L  E  R  T  Y  A  S  Q  H  N  S  S  P  R  S  I  *  *  D  G  *  T  Q  A  E  T  Y  L  P  L  C  *  W  E  Y  *  N  N  H  S  Q  E  L  P  V  S  *  N  A  L  Q  L  *  *  N  G  Q  N  Y  W  K  A  G  *  K  D  P  *  S  G  R  N  C  Q  W  F  T  C  E  E  R  F  H  L  P  D  H  G  T  *  *  S  P  C  L  F  S  A  I  H  C  K  C  H  T  E  N  N  Y  P  L  F  R  C  F  C  C  Y  T  T  Q  A  *  A  D  L  *  K  C  R  V  L  N  R  *  G  I  W  C  T  N  F  A  G  A  *  A  S  D  G  E  A  G  I  R  E  S  S  L  R  S  L  D  S  R  S  N  L  *  Y  G  I  *  L  R  G  G  I  G  S  E  C  Q  Q  G  D  A  *  S  I  N  *  L  G  N  S  P  *  *  G  R  R  C  K  E  D  *  E  N  S  P  C  T  P  G  F  Y  V  W  *  C  E  S  W  G  R  W  *  A  G  Y  Q  F  *  W  D  F  G  S  S  G  Q  T  N  W  *  R  R  V  *  K  *  S  S  Q  G  E  S  *  D  C  I  L  A  N  *  K  C  S  E  A  N  T  A  F  Y  I  L  A  S  C  I  I  F  C  N  R  V  K  S  F  Y  A </first_frame>
            <second_frame>  M  A  S  T  G  Q  P  Q  S  S  L  K  R  P  S  P  G  V  N  R  D  G  D  K  L  V  I  T  P  L  G  A  G  N  E  V  G  R  S  C  V  F  M  T  F  K  G  K  T  I  M  :  F  D  C  G  I  H  P  G  Y  S  G  M  S  A  L  P  Y  F  D  E  I  D  P  S  S  I  D  V  L  L  V  T  H :   F  H  L  D  H  A  A  S  L  P  Y  F  L  E  K  :  T  T  F  K  G  R  V  F  M  T  H  A  T  K  A  I  Y  K  L  L  L  S  D  Y  V  K  V  S  K  V  S  V  E  D  M  L  F  D  E  H  D  I  L  H  S  M  E  K  I  E  :  V  I  D  F  H  Q  T  M  E  V  N  G  I  R  F  W  C  Y  T  A  G  H  V  L  G  A  A  M  F  M  V  D  I  A  G  V  R  V  L  Y  T  G  D  Y  S  R  E  E  D  R  H  L  R  A  A  E  I  P  Q  F  S  P  D  V  C  I  I  E  S  T  Y  G  V  Q  L  H  M  P  R  Q  I  R  E  K  L  F  T  D  V  I  H  S  T  L  M  Q  G  G  R  V  L  I  P  A  Y  A  L  G  R  A  Q  E  L  L  L  I  L  E  E  Y  W  S  N  H  P  E  L  A  N  F  P  I  Y  Y  A  S  P  L  A  R  R  C  M  A  V  Y  Q  T  Y  I  N  A  M  N  E  R  I  R  N  Q  F  I  S  A  N  P  F  N  F  K  H  I  S  S  L  N  S  I  E  D  F  I  D  N  K  P  C  V  V  M  A  S  P  G  S  L  Q  S  G  L  S  R  Q  L  F  D  K  W  C  S  D  K  K  N  A  C  V  I  P  G  Y  V  V  E  G  T  L  A  K  T  I  I  N  E  P  K  E  V  T  L  T  N  G  L  S  A  P  L  N  M  Q  V  H  Y  I  S  F  S  A  H  A  D  Y  A  Q  T  S  S  F  L  K  E  L  M  P  P  N  I  I  L  V  H  G  A  S  N  E  M  D  R  L  K  Q  K  L  T  S  L  F  A  D  G  N  T  K  I  I  T  P  K  N  C  Q  S  V  E  M  H  F  N  S  D  K  M  A  K  T  I  G  K  L  A  E  K  T  P  E  V  G  E  I  V  S  G  L  L  V  K  K  G  F  T  Y  Q  I  M  A  P  D  D  L  H  V  F  S  Q  L  S  T  A  N  V  T  Q  R  I  T  I  P  Y  S  G  A  F  A  V  I  Q  H  R  L  K  Q  I  Y  E  S  V  E  S  S  T  D  E  E  S  G  V  P  T  L  R  V  H  E  R  V  M  V  K  Q  E  S  E  N  H  L  S  V  H  W  T  A  D  P  I  C  D  M  V  S  D  S  V  V  A  L  V  L  N  A  S  R  E  M  P  K  V  S  I  D  S  E  T  P  L  N  E  E  E  D  A  K  K  T  E  K  I  V  H  A  L  L  V  S  M  F  G  N  V  K  V  G  D  G  G  K  L  V  I  N  F  D  G  I  L  A  H  L  D  K  Q  T  G  D  V  E  C  E  N  E  A  L  K  E  R  V  K  T  A  Y  W  R  I  R  S  A  V  K  P  I  P  L  S  T  S  *  P  L  V  L  S  F  V  T  V  L  R  V  S  M   </second_frame>
            <third_frame>   W  H  L  R  D  S  H  S  L  R  *  R  D  L  V  L  E  L  I  E  T  E  I  N  W  L  S  P  L  *  G  L  E  M  K  W  D  G  P  V  F  S  *  L  L  K  G  K  Q  S  C :   L  I  V  A  Y  I  R  V  T  Q  A  C  L  P  Y  H  I  L  M  K  L  I  L  H  L  L  M  F  F  L  L  P   : I  F  T  W  I  M  L  H  P  F  L  I  F  L  K  R :   L  H  L  R  G  V  F  S  *  H  M  P  Q  R  Q  Y  T  S  C  F  C  Q  I  M  L  K  L  A  K  S  L  L  K  I  C  C  L  M  N  M  T  F  F  T  P  W  K  K  L  R :   L  S  T  S  I  R  L  W  K  *  M  V  F  A  F  G  V  I  L  L  A  M  S  L  V  L  P  C  L  W  L  I  L  L  V  F  E  F  S  I  Q  E  T  I  P  V  K  K  T  G  I  S  V  Q  L  R  S  H  N  F  L  Q  M  F  A  L  *  N  Q  L  M  V  F  N  S  I  C  P  V  R  *  E  R  S  F  S  L  M  S  Y  I  Q  H  *  C  K  G  V  G  C  *  F  L  L  M  P  W  D  V  H  R  N  F  S  L  S  W  R  N  I  G  L  T  I  L  N  *  L  T  S  P  Y  I  M  L  L  H  L  Q  E  G  A  W  L  S  I  R  L  T  S  M  P  *  M  K  G  S  A  I  N  L  S  A  Q  I  P  L  I  L  S  I  Y  L  P  *  T  V  L  K  I  L  *  T  T  S  H  V  W  *  W  Q  V  Q  V  V  F  K  V  V  C  R  G  N  C  S  I  N  G  A  L  T  R  K  M  R  V  S  Y  L  G  M  *  W  K  G  P  W  L  R  L  S  S  M  N  Q  R  K  S  L  S  Q  M  A  C  L  L  H  L  I  C  R  F  I  I  F  H  S  Q  L  T  Q  I  M  L  R  R  V  P  S  *  K  N  L  C  L  P  T  *  F  *  S  T  E  H  L  M  R  W  I  D  S  S  R  N  L  P  P  S  L  L  M  G  I  L  K  *  S  L  P  R  T  A  S  Q  L  K  C  T  S  T  L  I  K  W  P  K  L  L  E  S  W  L  K  R  P  L  K  W  A  K  L  S  V  V  Y  L  *  R  K  V  S  L  T  R  S  W  H  L  M  I  S  M  S  F  L  S  Y  P  L  Q  M  S  H  R  E  *  L  S  P  I  Q  V  L  L  L  L  Y  N  T  G  L  S  R  S  M  K  V  *  S  P  Q  Q  M  R  N  L  V  Y  Q  L  C  G  C  M  S  E  *  W  *  S  R  N  Q  R  I  I  S  P  F  I  G  Q  Q  I  Q  F  V  I  W  Y  L  T  P  W  W  H  W  F  *  M  P  A  G  R  C  L  K  Y  Q  L  T  R  K  L  P  L  M  R  K  K  M  Q  R  R  L  R  K  *  S  M  H  S  W  F  L  C  L  V  M  *  K  L  G  T  V  V  S  W  L  S  I  L  M  G  F  W  L  I  W  T  N  K  L  V  T  S  S  V  K  M  K  L  S  R  R  E  L  R  L  H  T  G  E  L  E  V  Q  *  S  Q  Y  R  F  L  H  L  S  L  L  Y  Y  L  L  *  P  C  *  E  F  L  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0048D18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19093" stop="19245"/>
                    <exon start="19330" stop="19427"/>
                    <exon start="21093" stop="21138"/>
                    <exon start="21221" stop="21370"/>
                    <exon start="24533" stop="26173"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2085</number_coding_nucleotides>
                  <number_encoded_amino_acids>695</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MASTGQPQSSLKRPSPGVNRDGDKLVITPLGAGNEVGRSCVFMTFKGKTIMFDCGIHPGYSGMSALPYFDEIDPSSIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKVSKVSVEDMLFDEHDILHSMEKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDVCIIESTYGVQLHMPRQIREKLFTDVIHSTLMQGGRVLIPAYALGRAQELLLILEEYWSNHPELANFPIYYASPLARRCMAVYQTYINAMNERIRNQFISANPFNFKHISSLNSIEDFIDNKPCVVMASPGSLQSGLSRQLFDKWCSDKKNACVIPGYVVEGTLAKTIINEPKEVTLTNGLSAPLNMQVHYISFSAHADYAQTSSFLKELMPPNIILVHGASNEMDRLKQKLTSLFADGNTKIITPKNCQSVEMHFNSDKMAKTIGKLAEKTPEVGEIVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFAVIQHRLKQIYESVESSTDEESGVPTLRVHERVMVKQESENHLSVHWTADPICDMVSDSVVALVLNASREMPKVSIDSETPLNEEEDAKKTEKIVHALLVSMFGNVKVGDGGKLVINFDGILAHLDKQTGDVECENEALKERVKTAYWRIRSAVKPIPLSTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="27571" PGL_stop="28571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27571" e_stop="28571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="27571" e_stop="28571" e_length="1001"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27571" stop="28571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTGCCAATCTGCTCTGAATCTGCAAACAAAGCAAAATCATCTTCCATTTCATGGAAAATCGGCAAAAAAATTGAAAAAATACCCATAAAAATCCAATCTTGATTCTCAATTCACCGGCCATGCGCCACCGGAAGTCGTCGGAGCTGAAAAGACCAGGATCTGACCTCCTTCAACAGCCTGACGCCGACCCACCTCGTTATCGAGGTGTTCGTAAACGGCCATGGGGTAGATTCGCAGCAGAGATTAGAGATCCGATTAAAAAGACTCGAGTTTGGCTGGGTACCTTTGACACAGCTGAAGACGCCGCACGCGCTTACGACGATGCTGCACGCGCTCTCCGTGGAGCTAAGGCGAAAACTAATTTCAATATGTTACCTCTAACAGATGATCCTTATGATGATGAGTTTGAGCTTTTCCCCAATCCGAGACCGGCTTCTAGCAGTATGAGCAGTACGTTGGAATCGTCTAGTGGGCCTCGTGGCGGATCGAGTAGTAAGGTGACCCGGATGAAGATTCCTCGCCCAGTTCGTCCGATGGAGGAATGCCGGAGTGATTGCGATTCGTCGTCGTCTGTGGTGGATGATCGGTGTGATGTTGATCAAACGTCATCGTTTGTGACCAAACAACCTCTGCCGTTCGATCTGAATCTGCCACCTCCGTCGGATAACGATGGAGTTGATGTTGATGATTTGCACGTCACCGCTTTATGCCTCTAATTTACCCTTCTGTTACGGTGATGTTTGTTGTTAATTAATTTGATGATGAAGAAAAAAGAAAAAAAAAAAGGAAGTTCTTTTAGTTTTCGTTGTCAAATCTTCTTACTTTTTTTTTCAAATTTTGCTCGGAAAAATGATGTACTCAAATGGTGGATGATGAAAAACAAAATGGATTTTTAGATTATGTGTAGATTAGTGTAATGAGTCATGATGCGATCTGTATTAAGAAAGATTGTATCTGTATTTGTGTCTGTATCACAAAAAACATTGGATCTGATCTTGA</gDNA_template>
            <first_frame> H  C  Q  S  A  L  N  L  Q  T  K  Q  N  H  L  P  F  H  G  K  S  A  K  K  L  K  K  Y  P  *  K  S  N  L  D  S  Q  F  T  G  H  A  P  P  E  V  V  G  A  E  K  T  R  I  *  P  P  S  T  A  *  R  R  P  T  S  L  S  R  C  S  *  T  A  M  G  *  I  R  S  R  D  *  R  S  D  *  K  D  S  S  L  A  G  Y  L  *  H  S  *  R  R  R  T  R  L  R  R  C  C  T  R  S  P  W  S  *  G  E  N  *  F  Q  Y  V  T  S  N  R  *  S  L  *  *  *  V  *  A  F  P  Q  S  E  T  G  F  *  Q  Y  E  Q  Y  V  G  I  V  *  W  A  S  W  R  I  E  *  *  G  D  P  D  E  D  S  S  P  S  S  S  D  G  G  M  P  E  *  L  R  F  V  V  V  C  G  G  *  S  V  *  C  *  S  N  V  I  V  C  D  Q  T  T  S  A  V  R  S  E  S  A  T  S  V  G  *  R  W  S  *  C  *  *  F  A  R  H  R  F  M  P  L  I  Y  P  S  V  T  V  M  F  V  V  N  *  F  D  D  E  E  K  R  K  K  K  R  K  F  F  *  F  S  L  S  N  L  L  T  F  F  F  K  F  C  S  E  K  *  C  T  Q  M  V  D  D  E  K  Q  N  G  F  L  D  Y  V  *  I  S  V  M  S  H  D  A  I  C  I  K  K  D  C  I  C  I  C  V  C  I  T  K  N  I  G  S  D  L   </first_frame>
            <second_frame>  I  A  N  L  L  *  I  C  K  Q  S  K  I  I  F  H  F  M  E  N  R  Q  K  N  *  K  N  T  H  K  N  P  I  L  I  L  N  S  P  A  M  R  H  R  K  S  S  E  L  K  R  P  G  S  D  L  L  Q  Q  P  D  A  D  P  P  R  Y  R  G  V  R  K  R  P  W  G  R  F  A  A  E  I  R  D  P  I  K  K  T  R  V  W  L  G  T  F  D  T  A  E  D  A  A  R  A  Y  D  D  A  A  R  A  L  R  G  A  K  A  K  T  N  F  N  M  L  P  L  T  D  D  P  Y  D  D  E  F  E  L  F  P  N  P  R  P  A  S  S  S  M  S  S  T  L  E  S  S  S  G  P  R  G  G  S  S  S  K  V  T  R  M  K  I  P  R  P  V  R  P  M  E  E  C  R  S  D  C  D  S  S  S  S  V  V  D  D  R  C  D  V  D  Q  T  S  S  F  V  T  K  Q  P  L  P  F  D  L  N  L  P  P  P  S  D  N  D  G  V  D  V  D  D  L  H  V  T  A  L  C  L  *  F  T  L  L  L  R  *  C  L  L  L  I  N  L  M  M  K  K  K  E  K  K  K  G  S  S  F  S  F  R  C  Q  I  F  L  L  F  F  S  N  F  A  R  K  N  D  V  L  K  W  W  M  M  K  N  K  M  D  F  *  I  M  C  R  L  V  *  *  V  M  M  R  S  V  L  R  K  I  V  S  V  F  V  S  V  S  Q  K  T  L  D  L  I  L  </second_frame>
            <third_frame>   L  P  I  C  S  E  S  A  N  K  A  K  S  S  S  I  S  W  K  I  G  K  K  I  E  K  I  P  I  K  I  Q  S  *  F  S  I  H  R  P  C  A  T  G  S  R  R  S  *  K  D  Q  D  L  T  S  F  N  S  L  T  P  T  H  L  V  I  E  V  F  V  N  G  H  G  V  D  S  Q  Q  R  L  E  I  R  L  K  R  L  E  F  G  W  V  P  L  T  Q  L  K  T  P  H  A  L  T  T  M  L  H  A  L  S  V  E  L  R  R  K  L  I  S  I  C  Y  L  *  Q  M  I  L  M  M  M  S  L  S  F  S  P  I  R  D  R  L  L  A  V  *  A  V  R  W  N  R  L  V  G  L  V  A  D  R  V  V  R  *  P  G  *  R  F  L  A  Q  F  V  R  W  R  N  A  G  V  I  A  I  R  R  R  L  W  W  M  I  G  V  M  L  I  K  R  H  R  L  *  P  N  N  L  C  R  S  I  *  I  C  H  L  R  R  I  T  M  E  L  M  L  M  I  C  T  S  P  L  Y  A  S  N  L  P  F  C  Y  G  D  V  C  C  *  L  I  *  *  *  R  K  K  K  K  K  K  E  V  L  L  V  F  V  V  K  S  S  Y  F  F  F  Q  I  L  L  G  K  M  M  Y  S  N  G  G  *  *  K  T  K  W  I  F  R  L  C  V  D  *  C  N  E  S  *  C  D  L  Y  *  E  R  L  Y  L  Y  L  C  L  Y  H  K  K  H  W  I  *  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0048D18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27647" stop="28288"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNTHKNPILILNSPAMRHRKSSELKRPGSDLLQQPDADPPRYRGVRKRPWGRFAAEIRDPIKKTRVWLGTFDTAEDAARAYDDAARALRGAKAKTNFNMLPLTDDPYDDEFELFPNPRPASSSMSSTLESSSGPRGGSSSKVTRMKIPRPVRPMEECRSDCDSSSSVVDDRCDVDQTSSFVTKQPLPFDLNLPPPSDNDGVDVDDLHVTALCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29039" PGL_stop="29768"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29039" e_stop="29768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="29039" e_stop="29768" e_length="730"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29039" stop="29768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAACGGAACACTTGAAAGAAAATAATTGTGGTAGAGAAGAAGGTCTATGTAAAAGATATTAATTGGACCAGCTCTGCAGTCTCCTTTTGTCACCTTATATATTTTCTTGTGATGAACCACTCAACTGCCCAGCAACAGAACGACACAAATTCTTGTTGAATGAGTTGTCCTGAATTCCTTTCAGCTGGCTATATTCATCATTAAGCTTGGTTCAAGAGCAAGTGGTCATCCATCTCTAGATGGAATGCTTCATTTGAGTATGGAAATTGCTCCTGAGGTAAGCCGCTAATTTTTCAAGTGAAATTTATTTTCATGCGTCTTTTTTCAAAAAATGAGCCTTTTAAATGTGTCCTGGTAAGTTTCTGAGATGTTTTTTTTTTAAAACCAAAGTTTAACTGCTTTTGTTCTGTGGTAAGAACTTCCGCTTAATACCTCTCTGAACTGAAGGAAAATTATTCAAGTGTCCTTTGCAGAATGACTTGATGAAGTTAAAACTCTAGATTTCGAAAAAGTATATCATTTTCAAGTTTTAGATTACTTTTTATGGGTTAAACAAGAATTCTTTTTCATGGGTTTTGAAGTGTCAGTGGTGGAAGTTACTACCCTCACCTGTTTATGAACTTGTATAATATATCGTGGTGTTTGTTATCTGCCTATGTTATTCCACAATGAAGGCTTACAAATGGTACTTTTGATTAGTAAAATGCTTTTTAACAAATACAAGTGTA</gDNA_template>
            <first_frame> L  N  G  T  L  E  R  K  *  L  W  *  R  R  R  S  M  *  K  I  L  I  G  P  A  L  Q  S  P  F  V  T  L  Y  I  F  L  *  *  T  T  Q  L  P  S  N  R  T  T  Q  I  L  V  E  *  V  V  L  N  S  F  Q  L  A  I  F  I  I  K  L  G  S  R  A  S  G  H  P  S  L  D  G  M  L  H  L  S  M  E  I  A  P  E  V  S  R  *  F  F  K  *  N  L  F  S  C  V  F  F  Q  K  M  S  L  L  N  V  S  W  *  V  S  E  M  F  F  F  *  N  Q  S  L  T  A  F  V  L  W  *  E  L  P  L  N  T  S  L  N  *  R  K  I  I  Q  V  S  F  A  E  *  L  D  E  V  K  T  L  D  F  E  K  V  Y  H  F  Q  V  L  D  Y  F  L  W  V  K  Q  E  F  F  F  M  G  F  E  V  S  V  V  E  V  T  T  L  T  C  L  *  T  C  I  I  Y  R  G  V  C  Y  L  P  M  L  F  H  N  E  G  L  Q  M  V  L  L  I  S  K  M  L  F  N  K  Y  K  C  </first_frame>
            <second_frame>  S  T  E  H  L  K  E  N  N  C  G  R  E  E  G  L  C  K  R  Y  *  L  D  Q  L  C  S  L  L  L  S  P  Y  I  F  S  C  D  E  P  L  N  C  P  A  T  E  R  H  K  F  L  L  N  E  L  S  *  I  P  F  S  W  L  Y  S  S  L  S  L  V  Q  E  Q  V  V  I  H  L  *  M  E  C  F  I  *  V  W  K  L  L  L  R  *  A  A  N  F  S  S  E  I  Y  F  H  A  S  F  F  K  K  *  A  F  *  M  C  P  G  K  F  L  R  C  F  F  F  K  T  K  V  *  L  L  L  F  C  G  K  N  F  R  L  I  P  L  *  T  E  G  K  L  F  K  C  P  L  Q  N  D  L  M  K  L  K  L  *  I  S  K  K  Y  I  I  F  K  F  *  I  T  F  Y  G  L  N  K  N  S  F  S  W  V  L  K  C  Q  W  W  K  L  L  P  S  P  V  Y  E  L  V  *  Y  I  V  V  F  V  I  C  L  C  Y  S  T  M  K  A  Y  K  W  Y  F  *  L  V  K  C  F  L  T  N  T  S  V </second_frame>
            <third_frame>   Q  R  N  T  *  K  K  I  I  V  V  E  K  K  V  Y  V  K  D  I  N  W  T  S  S  A  V  S  F  C  H  L  I  Y  F  L  V  M  N  H  S  T  A  Q  Q  Q  N  D  T  N  S  C  *  M  S  C  P  E  F  L  S  A  G  Y  I  H  H  *  A  W  F  K  S  K  W  S  S  I  S  R  W  N  A  S  F  E  Y  G  N  C  S  *  G  K  P  L  I  F  Q  V  K  F  I  F  M  R  L  F  S  K  N  E  P  F  K  C  V  L  V  S  F  *  D  V  F  F  L  K  P  K  F  N  C  F  C  S  V  V  R  T  S  A  *  Y  L  S  E  L  K  E  N  Y  S  S  V  L  C  R  M  T  *  *  S  *  N  S  R  F  R  K  S  I  S  F  S  S  F  R  L  L  F  M  G  *  T  R  I  L  F  H  G  F  *  S  V  S  G  G  S  Y  Y  P  H  L  F  M  N  L  Y  N  I  S  W  C  L  L  S  A  Y  V  I  P  Q  *  R  L  T  N  G  T  F  D  *  *  N  A  F  *  Q  I  Q  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0048D18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="41721" PGL_stop="33170"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41721" e_stop="41669"/>
            <exon e_start="41581" e_stop="41519"/>
            <exon e_start="41171" e_stop="41058"/>
            <exon e_start="40971" e_stop="40806"/>
            <exon e_start="40731" e_stop="40619"/>
            <exon e_start="40524" e_stop="40387"/>
            <exon e_start="40298" e_stop="40168"/>
            <exon e_start="40079" e_stop="40014"/>
            <exon e_start="34776" e_stop="34713"/>
            <exon e_start="34452" e_stop="34341"/>
            <exon e_start="34254" e_stop="34181"/>
            <exon e_start="33966" e_stop="33872"/>
            <exon e_start="33789" e_stop="33758"/>
            <exon e_start="33668" e_stop="33170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="0.998" e_score="0.736"/>
          <exon-intron don_prob="0.998" acc_prob="0.843" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.200" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.778" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.897" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.788" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.736">
            <gDNA_exon_boundary e_start="41721" e_stop="41669" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41668" i_stop="41582" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41581" e_stop="41519" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.843">
            <gDNA_intron_boundary i_start="41518" i_stop="41172" i_length="347"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41171" e_stop="41058" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.933" acc_prob="0.963">
            <gDNA_intron_boundary i_start="41057" i_stop="40972" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40971" e_stop="40806" e_length="166"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.200">
            <gDNA_intron_boundary i_start="40805" i_stop="40732" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40731" e_stop="40619" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.810">
            <gDNA_intron_boundary i_start="40618" i_stop="40525" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40524" e_stop="40387" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.778" acc_prob="0.913">
            <gDNA_intron_boundary i_start="40386" i_stop="40299" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40298" e_stop="40168" e_length="131"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="0.993">
            <gDNA_intron_boundary i_start="40167" i_stop="40080" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40079" e_stop="40014" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.942" acc_prob="0.919">
            <gDNA_intron_boundary i_start="40013" i_stop="34777" i_length="5237"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="34776" e_stop="34713" e_length="64"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="34712" i_stop="34453" i_length="260"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="34452" e_stop="34341" e_length="112"/>
          </exon>
          <intron i_serial="10" don_prob="0.992" acc_prob="0.934">
            <gDNA_intron_boundary i_start="34340" i_stop="34255" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="34254" e_stop="34181" e_length="74"/>
          </exon>
          <intron i_serial="11" don_prob="0.987" acc_prob="0.972">
            <gDNA_intron_boundary i_start="34180" i_stop="33967" i_length="214"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="33966" e_stop="33872" e_length="95"/>
          </exon>
          <intron i_serial="12" don_prob="0.897" acc_prob="0.993">
            <gDNA_intron_boundary i_start="33871" i_stop="33790" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="33789" e_stop="33758" e_length="32"/>
          </exon>
          <intron i_serial="13" don_prob="0.995" acc_prob="0.788">
            <gDNA_intron_boundary i_start="33757" i_stop="33669" i_length="89"/>
          </intron>
          <exon e_serial="14" e_score="0.998">
            <gDNA_exon_boundary e_start="33668" e_stop="33170" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41721" stop="41669"/>
              <exon start="41581" stop="41519"/>
              <exon start="41171" stop="41058"/>
              <exon start="40971" stop="40806"/>
              <exon start="40731" stop="40619"/>
              <exon start="40524" stop="40387"/>
              <exon start="40298" stop="40168"/>
              <exon start="40079" stop="40017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40067" stop="40014"/>
              <exon start="34776" stop="34713"/>
              <exon start="34452" stop="34341"/>
              <exon start="34254" stop="34181"/>
              <exon start="33966" stop="33872"/>
              <exon start="33789" stop="33758"/>
              <exon start="33668" stop="33170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324472" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATAGAAAAGCAGTTGATTCAAATGAACGGCAGGGTCCTTGAAGCCCCAAAG : TTGAAGGTTGGTAATGGCGAAGAGGTCACTCCCTGTGACGGCAGGTGGAATTTCAAGAACAAG : CATCTTTTCAACCCTGCACGAATTGAACGCTGGGCAGTGGTCAACTTCTCTGCCAATTGTGATACAAGTCACCTTTCAAGGGAGCTTATTAGTTGCGGAAGGAGCAAAGGCATT : CATTTTGAGCGCCCACATACACTCATTGAGGAAGATCCCCAGTATAGGCGAGCTGGGCCTGTAGTTCGAGTAGAACAGATGTTTGAAGAGATAATAGCTAGACTGCCTGGCCATCCTGATTTCCTCCTCTGTGTCTTGCCAGAGCGGAAAAACTCAGAGTTATATG : GACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAG : CTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACCGCTTATTAAGGACACTCCAACAATGATCCTGGGAATGGACGTCTCTCATGGATCTCGTGTTCAATCAGATATTCCATCAATTGCTGCG : GTTGTAGGATCCTTATACTGGCCATTAATATCCAAGTATAAGGCAGTTGTGCGCAGTCAATCTCCAAAGTTGGAAATTGTAGAATCCTTATACAAGCCTTTACCAAATGGAGACGATGAAGGAATCATGAG : AGAACTACTTCTGGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTTCAG : GGATGGCGTCAGCGAATCACAGTTTAGTCAAGTTCTGAACCTTGAGCTAGATCAAATGATCAAG : GCATACAAGCATCTTGGTGAGGGCGGCAACCCTAAGTTCACCTTGATCGTGGCTCAAAAGAATCACCATACAAAACTATTTCAAGCTAATGCAGTTGATAATGTACCACCAG : GTACTGTTGTAGACACAAATATTGTGCATCCTAGAAATAATGATTTTTTCATGTGTGCACATGCGGGGATGATT : GGAACAACTAAACCTGCACATTATCATGTATTGCTTGATGAGATTGGTTTCGCACCTGATGTCCTGCAAAATCTCATACATTCACTATCATATGT : GTACCAAAGGAGTACCAGCGCGACCTCTATTG : TGGCTCCTGTGCGTTATGCACACCTAGCAGCACAACAATTCGGGCAGTTTGATAAGTACGAGGACCACTCCGAAACTTTGTCAGAACAGGGAAGTGTCAAATCAATTGGGACTACTCCGGTAACCCAACTGCCCAGGCTGCACAAGAATGTCAGCGACTCAATGTTTTTCTGTTGAAAATTGTAAAGCTTTTAAATGCATATGCTGTAAATCCTTAGTAGTTTGGTAGTATAGTACCCGGCTCCAAATTTTGTCGAGGCCTTCGGTTAGTTAAGTGCTTTAAGGTCGTCTAACAAGGATCATGCTTCGAGTTTGTTTTATTTTTTTGACGTAATTAAGATAGAAATTTCACCATTTAAAGGGCATAGAATTTTGGGCGTTGCTCCATTTAGCTATTTTAGAAGTTGAACTGATTTTTGTATAGTCAAAGTTTGTCTAAGTTTGGCGCTTGATTTGTTAAACCGCTGGTCTCTTTTTAGAGTTTAAATGACTCAGAAATT</gDNA_template>
            <first_frame> Q  *  K  S  S  *  F  K  *  T  A  G  S  L  K  P  Q  S :   *  R  L  V  M  A  K  R  S  L  P  V  T  A  G  G  I  S  R  T  S :   I  F  S  T  L  H  E  L  N  A  G  Q  W  S  T  S  L  P  I  V  I  Q  V  T  F  Q  G  S  L  L  V  A  E  G  A  K  A  F :   I  L  S  A  H  I  H  S  L  R  K  I  P  S  I  G  E  L  G  L  *  F  E  *  N  R  C  L  K  R  *  *  L  D  C  L  A  I  L  I  S  S  S  V  S  C  Q  S  G  K  T  Q  S  Y  M  :  D  L  G  R  K  K  V  *  L  T  W  E  L  L  L  N  V  S  L  R  *  R  S  P  I  D  I  *  Q  M  C  F  S  K  L  M  L  S :   L  E  G  P  I  H  C  W  L  W  N  I  P  L  I  Y  R  L  L  R  T  L  Q  Q  *  S  W  E  W  T  S  L  M  D  L  V  F  N  Q  I  F  H  Q  L  L  R :   L  *  D  P  Y  T  G  H  *  Y  P  S  I  R  Q  L  C  A  V  N  L  Q  S  W  K  L  *  N  P  Y  T  S  L  Y  Q  M  E  T  M  K  E  S  *   : E  N  Y  F  W  T  S  I  G  Q  V  T  G  I  S  Q  L  K  L  L  S  S   : G  M  A  S  A  N  H  S  L  V  K  F  *  T  L  S  *  I  K  *  S  R :   H  T  S  I  L  V  R  A  A  T  L  S  S  P  *  S  W  L  K  R  I  T  I  Q  N  Y  F  K  L  M  Q  L  I  M  Y  H  Q  :  V  L  L  *  T  Q  I  L  C  I  L  E  I  M  I  F  S  C  V  H  M  R  G  *  L :   E  Q  L  N  L  H  I  I  M  Y  C  L  M  R  L  V  S  H  L  M  S  C  K  I  S  Y  I  H  Y  H  M   : C  T  K  G  V  P  A  R  P  L  L  :  W  L  L  C  V  M  H  T  *  Q  H  N  N  S  G  S  L  I  S  T  R  T  T  P  K  L  C  Q  N  R  E  V  S  N  Q  L  G  L  L  R  *  P  N  C  P  G  C  T  R  M  S  A  T  Q  C  F  S  V  E  N  C  K  A  F  K  C  I  C  C  K  S  L  V  V  W  *  Y  S  T  R  L  Q  I  L  S  R  P  S  V  S  *  V  L  *  G  R  L  T  R  I  M  L  R  V  C  F  I  F  L  T  *  L  R  *  K  F  H  H  L  K  G  I  E  F  W  A  L  L  H  L  A  I  L  E  V  E  L  I  F  V  *  S  K  F  V  *  V  W  R  L  I  C  *  T  A  G  L  F  L  E  F  K  *  L  R  N  </first_frame>
            <second_frame>  N  R  K  A  V  D  S  N  E  R  Q  G  P  *  S  P  K   : V  E  G  W  *  W  R  R  G  H  S  L  *  R  Q  V  E  F  Q  E  Q   : A  S  F  Q  P  C  T  N  *  T  L  G  S  G  Q  L  L  C  Q  L  *  Y  K  S  P  F  K  G  A  Y  *  L  R  K  E  Q  R  H   : S  F  *  A  P  T  Y  T  H  *  G  R  S  P  V  *  A  S  W  A  C  S  S  S  R  T  D  V  *  R  D  N  S  *  T  A  W  P  S  *  F  P  P  L  C  L  A  R  A  E  K  L  R  V  I  W :   T  L  E  E  K  K  F  D  *  L  G  N  C  Y  S  M  Y  L  S  V  K  D  H  R  S  I  S  N  K  C  A  S  Q  N  *  C  *   : A  W  R  D  Q  F  T  V  G  Y  G  T  Y  L  S  S  T  A  Y  *  G  H  S  N  N  D  P  G  N  G  R  L  S  W  I  S  C  S  I  R  Y  S  I  N  C  C   : G  C  R  I  L  I  L  A  I  N  I  Q  V  *  G  S  C  A  Q  S  I  S  K  V  G  N  C  R  I  L  I  Q  A  F  T  K  W  R  R  *  R  N  H  E  :  R  T  T  S  G  L  L  *  D  K  *  Q  A  *  A  S  S  N  Y  C  L  Q  :  G  W  R  Q  R  I  T  V  *  S  S  S  E  P  *  A  R  S  N  D  Q   : G  I  Q  A  S  W  *  G  R  Q  P  *  V  H  L  D  R  G  S  K  E  S  P  Y  K  T  I  S  S  *  C  S  *  *  C  T  T  R :   Y  C  C  R  H  K  Y  C  A  S  *  K  *  *  F  F  H  V  C  T  C  G  D  D   : W  N  N  *  T  C  T  L  S  C  I  A  *  *  D  W  F  R  T  *  C  P  A  K  S  H  T  F  T  I  I  C  :  V  P  K  E  Y  Q  R  D  L  Y  C :   G  S  C  A  L  C  T  P  S  S  T  T  I  R  A  V  *  *  V  R  G  P  L  R  N  F  V  R  T  G  K  C  Q  I  N  W  D  Y  S  G  N  P  T  A  Q  A  A  Q  E  C  Q  R  L  N  V  F  L  L  K  I  V  K  L  L  N  A  Y  A  V  N  P  *  *  F  G  S  I  V  P  G  S  K  F  C  R  G  L  R  L  V  K  C  F  K  V  V  *  Q  G  S  C  F  E  F  V  L  F  F  *  R  N  *  D  R  N  F  T  I  *  R  A  *  N  F  G  R  C  S  I  *  L  F  *  K  L  N  *  F  L  Y  S  Q  S  L  S  K  F  G  A  *  F  V  K  P  L  V  S  F  *  S  L  N  D  S  E  I </second_frame>
            <third_frame>   I  E  K  Q  L  I  Q  M  N  G  R  V  L  E  A  P  K  :  L  K  V  G  N  G  E  E  V  T  P  C  D  G  R  W  N  F  K  N  K  :  H  L  F  N  P  A  R  I  E  R  W  A  V  V  N  F  S  A  N  C  D  T  S  H  L  S  R  E  L  I  S  C  G  R  S  K  G  I  :  H  F  E  R  P  H  T  L  I  E  E  D  P  Q  Y  R  R  A  G  P  V  V  R  V  E  Q  M  F  E  E  I  I  A  R  L  P  G  H  P  D  F  L  L  C  V  L  P  E  R  K  N  S  E  L  Y   : G  P  W  K  K  K  S  L  T  D  L  G  I  V  T  Q  C  I  S  P  L  K  I  T  D  R  Y  L  T  N  V  L  L  K  I  N  A  K  :  L  G  G  T  N  S  L  L  A  M  E  H  T  S  H  L  P  L  I  K  D  T  P  T  M  I  L  G  M  D  V  S  H  G  S  R  V  Q  S  D  I  P  S  I  A  A  :  V  V  G  S  L  Y  W  P  L  I  S  K  Y  K  A  V  V  R  S  Q  S  P  K  L  E  I  V  E  S  L  Y  K  P  L  P  N  G  D  D  E  G  I  M  R :   E  L  L  L  D  F  Y  R  T  S  N  R  H  K  P  A  Q  I  I  V  F  R :   D  G  V  S  E  S  Q  F  S  Q  V  L  N  L  E  L  D  Q  M  I  K  :  A  Y  K  H  L  G  E  G  G  N  P  K  F  T  L  I  V  A  Q  K  N  H  H  T  K  L  F  Q  A  N  A  V  D  N  V  P  P   : G  T  V  V  D  T  N  I  V  H  P  R  N  N  D  F  F  M  C  A  H  A  G  M  I  :  G  T  T  K  P  A  H  Y  H  V  L  L  D  E  I  G  F  A  P  D  V  L  Q  N  L  I  H  S  L  S  Y  V :   Y  Q  R  S  T  S  A  T  S  I   : V  A  P  V  R  Y  A  H  L  A  A  Q  Q  F  G  Q  F  D  K  Y  E  D  H  S  E  T  L  S  E  Q  G  S  V  K  S  I  G  T  T  P  V  T  Q  L  P  R  L  H  K  N  V  S  D  S  M  F  F  C  *  K  L  *  S  F  *  M  H  M  L  *  I  L  S  S  L  V  V  *  Y  P  A  P  N  F  V  E  A  F  G  *  L  S  A  L  R  S  S  N  K  D  H  A  S  S  L  F  Y  F  F  D  V  I  K  I  E  I  S  P  F  K  G  H  R  I  L  G  V  A  P  F  S  Y  F  R  S  *  T  D  F  C  I  V  K  V  C  L  S  L  A  L  D  L  L  N  R  W  S  L  F  R  V  *  M  T  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0048D18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41719" stop="41669"/>
                    <exon start="41581" stop="41519"/>
                    <exon start="41171" stop="41058"/>
                    <exon start="40971" stop="40806"/>
                    <exon start="40731" stop="40619"/>
                    <exon start="40524" stop="40387"/>
                    <exon start="40298" stop="40168"/>
                    <exon start="40079" stop="40014"/>
                    <exon start="34776" stop="34713"/>
                    <exon start="34452" stop="34341"/>
                    <exon start="34254" stop="34181"/>
                    <exon start="33966" stop="33872"/>
                    <exon start="33789" stop="33758"/>
                    <exon start="33668" stop="33493"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEKQLIQMNGRVLEAPKLKVGNGEEVTPCDGRWNFKNKHLFNPARIERWAVVNFSANCDTSHLSRELISCGRSKGIHFERPHTLIEEDPQYRRAGPVVRVEQMFEEIIARLPGHPDFLLCVLPERKNSELYGPWKKKSLTDLGIVTQCISPLKITDRYLTNVLLKINAKLGGTNSLLAMEHTSHLPLIKDTPTMILGMDVSHGSRVQSDIPSIAAVVGSLYWPLISKYKAVVRSQSPKLEIVESLYKPLPNGDDEGIMRELLLDFYRTSNRHKPAQIIVFRDGVSESQFSQVLNLELDQMIKAYKHLGEGGNPKFTLIVAQKNHHTKLFQANAVDNVPPGTVVDTNIVHPRNNDFFMCAHAGMIGTTKPAHYHVLLDEIGFAPDVLQNLIHSLSYVYQRSTSATSIVAPVRYAHLAAQQFGQFDKYEDHSETLSEQGSVKSIGTTPVTQLPRLHKNVSDSMFFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 12664 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 1809 bytes was the average size of a spliced alignment
$ 12208 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2034 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 10 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-07 03:15:50
-->
