<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-02 14:38:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344783" ref_strand="-" ref_description="SGN-E344783 [cTOF-21-F4]">
      <seq>tgccattttccaaaacaacattgaggacacgggcattttattctatcttctatagctccatttttaaaagcaaattccaaaaactgattcaaaccaaccagatattcctttgtggtccttggcattctaatccaagatttatccatcgaaaaaacaaaattagcagacaatatcacctataagattttcatgagaaaataataaggttagagtgatattttaacaattttatgtaccagctaatgcagaaatggagtatatacagaaatggtcgtaatgttttctttttgcatgccaaaattgtaacataatgaacacaggaagtggatgtggatttacagaacaacaatctgagagaaaatgtgtattttttctttatttagtactactgtagtaagcgcacctgaattatttacaggcttgtactcgatattcaatcactttgtgtatgtactaacttattcggcagaaactcattgatttattttgtaagtaaaataaaacagatagctgagattgagaaagatcagcatcaacaaatgaacttgataccaggaagttcatcaagctatcatcaaagagtaccaacatatatcaaaagggggtcagagtacctcaattttctttatccttaaacaaacaagatctagcagctctctagttccagctccagttcaagataaatcaaatattgaaagggaggtcagacaaattcgttgtgatagttctttatgctgtatgggttgataccagcaggatcttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0088K03.1" temp_strand="+" temp_description="C07SLe0088K03.1  AC234407.1 htgs_phase:1 submitted_to_sgn_as:gi|222136707|gb|AC234407.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0088K03, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="50660" stop="52033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50960" g_stop="51230" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51231" i_stop="51293" i_length="63">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51294" g_stop="51726" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="701" r_length="430" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0088K03.1" gen_strand="+" ref_id="SGN-E344783" ref_strand="-">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0088K03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344783" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50960" e_stop="51230"/>
          <exon e_start="51294" e_stop="51726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCATTTTCCAAAATAACATTAAGGACATGAGCATTTTATTTGATCTTCTATAGCTCTCTTTTTAAAAGCAAATTCCAAAAACTAATTCAAACCAACCACAGATTCTTTTGTGGTCCTTGGCATTCTAATCCAAGATTTATCCATCGAAAAAAACAAGAATAGCAGACAATATCACCTATAAGATTTTCATGAGAAAATTATAAGGTTATAGTGATA-TTTAACAATTTTATGTACCAGCTAATGCATAAATGGAGTATATGCAGAAGAGGGTAAGTCATAGTACAATCTTTCATCTAGTTAGTTTTTATTCAAGTTAATCGATCTATTTTTGGTCATAATGTTTTCTATTT-CATGTCAAAATTGTAACATAATGAACACAGGAAGTGGATGTGGATTTACTAAACAACAA-GTGAGAGAAAATGTCTATTTTTTCTCTATTTAGTACTACTGT-GTAAGCGCACCTGAATTATTTACAGGCTTGTACTCGATATTCAATCAATTTGTGTATGTAATAACTTATTCGGCAGAAACTCATTGATTTATTTTGTAAGTAAAATAAAACAGATAGGTGAGATTGAGAAAGCTCAGCATCAGCATCAGCAAACTTACTTGATACTAGGAAATTCATCAAGATATCATGAAAGAGTACCAACAAATATCAAAAAGGGGTCAGAGTACCTCAACTTTCTTTATCCTTAAACAAACAAGATCTAGCAGCTCTCCAGTTCCAGATCCAATTCAAGATAAAGCAAATATTGAAAGGGG</genome_strand>
        <mrna_strand>TGCCATTTTCCAAAACAACATTGAGGACACGGGCATTTTATTCTATCTTCTATAGCTCCATTTTTAAAAGCAAATTCCAAAAACTGATTCAAACCAACCAGATATTCCTTTGTGGTCCTTGGCATTCTAATCCAAGATTTATCCATCG-AAAAAACAAAATTAGCAGACAATATCACCTATAAGATTTTCATGAGAAAATAATAAGGTTAGAGTGATATTTTAACAATTTTATGTACCAGCTAATGCAGAAATGGAGTATATACAGAAATGG...............................................................TCGTAATGTTTTCTTTTTGCATGCCAAAATTGTAACATAATGAACACAGGAAGTGGATGTGGATTTACAGAACAACAATCTGAGAGAAAATGTGTATTTTTTCTTTATTTAGTACTACTGTAGTAAGCGCACCTGAATTATTTACAGGCTTGTACTCGATATTCAATCACTTTGTGTATGTACTAACTTATTCGGCAGAAACTCATTGATTTATTTTGTAAGTAAAATAAAACAGATAGCTGAGATTGAG-AA----AG-ATCAGCATCAACAAATGAACTTGATACCAGGAAGTTCATCAAGCTATCATCAAAGAGTACCAACATATATCAAAAGGGGGTCAGAGTACCTCAATTTTCTTTATCCTTAAACAAACAAGATCTAGCAGCTCTCTAGTTCCAGCTCCAGTTCAAGATAAATCAAATATTGAAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549191" ref_strand="+" ref_description="SGN-E549191 [TUS-68-C7]">
      <seq>tttttctccagtactaaatcaacctaattaagttgatatggcaataatatctattcctagtagcaccacaatgtttccaatgcctcaacaagtattgagacgaaataaagaggttgttatggctgaggaaatgggttgcgctagaatgctcaccttgaatcggcctgataatttaaattatatatcagccaaagtggcattagcactcgggcagaactttgagaaatatgagaatgatgataatgctgattttgtaatcatcaagggggctggtcgtactttttctgctggtggagacttacatatgttctatgatggacgaaacacaagggattctggcattgaatgtatttatagaatgtattggctttgctaccacattcatacttacaagaaaccgcatattgctcttgttcatggaatgtcagtgggtgggggtgcatccttgatgactccaatgaaattctctgtcgtcactgagaaagcgtttagttctactcctgaaataaatatagggttccatccagactgtggcttctcctatatgcttccgcgtcttccaggccgactaggggaatacgtgggcttaacaggagaaaaactaaggggtaaagaagtggttgctgctggactagccactcattttgttccttcacagaaattatttcagttggagaagcgtttgatgaccctaaaaatggagatgaggatancattagatcagtcatcaatgaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0088K03.1" temp_strand="+" temp_description="C07SLe0088K03.1  AC234407.1 htgs_phase:1 submitted_to_sgn_as:gi|222136707|gb|AC234407.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0088K03, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="52150" stop="54572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52450" g_stop="52561" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52562" i_stop="52668" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52669" g_stop="52752" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="196" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52753" i_stop="52852" i_length="100">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52853" g_stop="52921" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="265" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52922" i_stop="53223" i_length="302">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53224" g_stop="53287" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="329" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53288" i_stop="53410" i_length="123">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53411" g_stop="53568" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="487" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53569" i_stop="53677" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53678" g_stop="53762" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="572" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53763" i_stop="53891" i_length="129">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53892" g_stop="53977" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="658" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53978" i_stop="54189" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54190" g_stop="54272" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="740" r_length="82" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0088K03.1" gen_strand="+" ref_id="SGN-E549191" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0088K03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52450" e_stop="52561"/>
          <exon e_start="52669" e_stop="52752"/>
          <exon e_start="52853" e_stop="52921"/>
          <exon e_start="53224" e_stop="53287"/>
          <exon e_start="53411" e_stop="53568"/>
          <exon e_start="53678" e_stop="53762"/>
          <exon e_start="53892" e_stop="53977"/>
          <exon e_start="54190" e_stop="54272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCCAGTACTAAATCAACCTAATTAAGTTGATATGGCAATAATATCTATTCCTAGTAGCACCACAATGTTTCCAATGCCTCAACAAGTATTGAGACGAAATAAAGAGGTAATTACAACGTTACTAAAACAACTTATTAATGTCAAAAATATTATTCGATATTATCGATCTTCGGTCCGATATATGTAGCTTAATATATCTTTGGTTGTCATTAGGTTGTTATGGCTGAGGAAATGGGTTGCGCTAGAATGCTCACCTTGAATCGGCCTGATAATTTAAATTATATATCAGCCAAAGTGGTATATATTTAATAATTTATACTATATACTATATATGTATGGTTATAAAATGGCTATTGCAATGTTCACCTTAATTATAAAATTTCTTTTAAATAATTAGGCATTAGCACTCGGGCAGAACTTTGAGAAATATGAGAATGATGATAATGCTGATTTTGTAATCATCAAGGTAAGGACTTATTTAAGAAGTATCTATTTTGCTTTTTTTTTCTTTTTCTTTTATAACGCATAAACGTGTCCTTTTTACTTGGTATTGGCTGACATCTATACCTTGGAATGTGCACAAACAGACACACATACGACGTCATGTAATATGCAAATTATCATGTAGGATCGACGTGCATGGGTGTCTATTTGTTTAATTGTTGGAAGGCAATAACTGTCTGTTATAAGAACAAGTTAAAAGACATTTATATGTATTATATCTTTTGATTTTGCCAATTTAATTCTCATTAATTTGCACATATATAGGGGGCTGGTCGTACTTTTTCTGCTGGTGGAGACTTACATATGTTCTATGATGGACGAAACACAAGTAACTATTTTTTTTCATTTGTTACTATATATATGTCAGAACTATACTATTATTGAAATTATTAATTAATTACTACATGTTCAATTCATTTAAACTAATGAGTATATTAATTGTTTGAATTAGGGGATTCTGGCATTGAATGTATTTATAGAATGTATTGGCTTTGCTACCACATTCATACTTACAAGAAACCGCATATTGCTCTTGTTCATGGAATGTCAGTGGGTGGGGGTGCATCCTTGATGACTCCAATGAAATTCTCTGTCGTCACTGAGAAAGCGGTCAGTACATATATCGTATACTTATCTTATAAATGATGATTTGATTGTACGAATTCTATCGATATTTAATTTCAAGTCGTCTAACCTTTTTGTTGATGTAACTTTACAGTTTAGTTCTACTCCTGAAATAAATATAGGGTTCCATCCAGACTGTGGCTTCTCCTATATGCTTCCGCGTCTTCCAGGCCGACTAGGTAATTAAGCGCTAGACTTGACTCCTACCTTGTATATTAATACCGAATAATAATATATATGTAAAAGAGAAAGTACCTCTCCAAAAATATGTTAATTAATTAATTACATGTATGTATGTATATATGTAGGGGAATACGTGGGCTTAACAGGAGAAAAACTAAGGGGTAAAGAAGTGGTTGCTGCTGGACTAGCCACTCATTTTGTTCCTTCACAGGTTAGTCCAAGCTTTTCCTTTTCTTCAGAAATTCACCATACACTACAATAAATACAGAAATATTTATATTTAGCGGTAATAATATAATATGAATATATTCATAACCAACACTTTATGTGGCTCATGAATTACCGTAAGTTTTATATTGCCACTAAAAAGTTTTATTGTCTTTAATTATCTCTTTTGCTCATAATTTTTTTTTCAAATGCCAGAAATTATTTCAGTTGGAGAAGCGTTTGATGACCCTAAAAAATGGAGATGAGGATACAATTAGATCAGTCATCAATGAATTTTC</genome_strand>
        <mrna_strand>TTTTTCTCCAGTACTAAATCAACCTAATTAAGTTGATATGGCAATAATATCTATTCCTAGTAGCACCACAATGTTTCCAATGCCTCAACAAGTATTGAGACGAAATAAAGAG...........................................................................................................GTTGTTATGGCTGAGGAAATGGGTTGCGCTAGAATGCTCACCTTGAATCGGCCTGATAATTTAAATTATATATCAGCCAAAGTG....................................................................................................GCATTAGCACTCGGGCAGAACTTTGAGAAATATGAGAATGATGATAATGCTGATTTTGTAATCATCAAG..............................................................................................................................................................................................................................................................................................................GGGGCTGGTCGTACTTTTTCTGCTGGTGGAGACTTACATATGTTCTATGATGGACGAAACACAA...........................................................................................................................GGGATTCTGGCATTGAATGTATTTATAGAATGTATTGGCTTTGCTACCACATTCATACTTACAAGAAACCGCATATTGCTCTTGTTCATGGAATGTCAGTGGGTGGGGGTGCATCCTTGATGACTCCAATGAAATTCTCTGTCGTCACTGAGAAAGCG.............................................................................................................TTTAGTTCTACTCCTGAAATAAATATAGGGTTCCATCCAGACTGTGGCTTCTCCTATATGCTTCCGCGTCTTCCAGGCCGACTAG.................................................................................................................................GGGAATACGTGGGCTTAACAGGAGAAAAACTAAGGGGTAAAGAAGTGGTTGCTGCTGGACTAGCCACTCATTTTGTTCCTTCACAG....................................................................................................................................................................................................................AAATTATTTCAGTTGGAGAAGCGTTTGATGACCCT-AAAAATGGAGATGAGGATANCATTAGATCAGTCATCAATGAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309884" ref_strand="+" ref_description="SGN-E309884 [cLEZ-10-E19]">
      <seq>ttttctccagtactaaatcaacctaattaagttgatatggcaataatatctattcctagtagcaccacaatgtttccaatgcctcaacaagtattgagacgaaataaagaggttgttatggctgaggaaatgggttgcgctagaatgctcaccttgaatcggcctgataatttaaattatatatcagccaaagtggcattagcactcgggcagaactttgagaaatatgagaatgatgataatgctgattttgtaatcatcaagggggctggtcgtactttttctgctggtggagacttacatatgttctatgatggacgaaacacaagggattctggcattgaatgtatttatagaatgtattggctttgctaccacattcatacttacaagaaaccgcatattgctcttgttcatggaatgtcagtgggtgggggtgcatccttgatgactccaatgaaattctctgtcgtcactgagaaagcgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0088K03.1" temp_strand="+" temp_description="C07SLe0088K03.1  AC234407.1 htgs_phase:1 submitted_to_sgn_as:gi|222136707|gb|AC234407.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0088K03, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="52151" stop="53870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52451" g_stop="52561" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52562" i_stop="52668" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52669" g_stop="52752" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="195" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52753" i_stop="52852" i_length="100">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52853" g_stop="52921" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="264" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52922" i_stop="53223" i_length="302">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53224" g_stop="53287" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="328" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53288" i_stop="53410" i_length="123">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53411" g_stop="53568" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="486" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0088K03.1" gen_strand="+" ref_id="SGN-E309884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0088K03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52451" e_stop="52561"/>
          <exon e_start="52669" e_stop="52752"/>
          <exon e_start="52853" e_stop="52921"/>
          <exon e_start="53224" e_stop="53287"/>
          <exon e_start="53411" e_stop="53568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCAGTACTAAATCAACCTAATTAAGTTGATATGGCAATAATATCTATTCCTAGTAGCACCACAATGTTTCCAATGCCTCAACAAGTATTGAGACGAAATAAAGAGGTAATTACAACGTTACTAAAACAACTTATTAATGTCAAAAATATTATTCGATATTATCGATCTTCGGTCCGATATATGTAGCTTAATATATCTTTGGTTGTCATTAGGTTGTTATGGCTGAGGAAATGGGTTGCGCTAGAATGCTCACCTTGAATCGGCCTGATAATTTAAATTATATATCAGCCAAAGTGGTATATATTTAATAATTTATACTATATACTATATATGTATGGTTATAAAATGGCTATTGCAATGTTCACCTTAATTATAAAATTTCTTTTAAATAATTAGGCATTAGCACTCGGGCAGAACTTTGAGAAATATGAGAATGATGATAATGCTGATTTTGTAATCATCAAGGTAAGGACTTATTTAAGAAGTATCTATTTTGCTTTTTTTTTCTTTTTCTTTTATAACGCATAAACGTGTCCTTTTTACTTGGTATTGGCTGACATCTATACCTTGGAATGTGCACAAACAGACACACATACGACGTCATGTAATATGCAAATTATCATGTAGGATCGACGTGCATGGGTGTCTATTTGTTTAATTGTTGGAAGGCAATAACTGTCTGTTATAAGAACAAGTTAAAAGACATTTATATGTATTATATCTTTTGATTTTGCCAATTTAATTCTCATTAATTTGCACATATATAGGGGGCTGGTCGTACTTTTTCTGCTGGTGGAGACTTACATATGTTCTATGATGGACGAAACACAAGTAACTATTTTTTTTCATTTGTTACTATATATATGTCAGAACTATACTATTATTGAAATTATTAATTAATTACTACATGTTCAATTCATTTAAACTAATGAGTATATTAATTGTTTGAATTAGGGGATTCTGGCATTGAATGTATTTATAGAATGTATTGGCTTTGCTACCACATTCATACTTACAAGAAACCGCATATTGCTCTTGTTCATGGAATGTCAGTGGGTGGGGGTGCATCCTTGATGACTCCAATGAAATTCTCTGTCGTCACTGAGAAAGCG</genome_strand>
        <mrna_strand>TTTTCTCCAGTACTAAATCAACCTAATTAAGTTGATATGGCAATAATATCTATTCCTAGTAGCACCACAATGTTTCCAATGCCTCAACAAGTATTGAGACGAAATAAAGAG...........................................................................................................GTTGTTATGGCTGAGGAAATGGGTTGCGCTAGAATGCTCACCTTGAATCGGCCTGATAATTTAAATTATATATCAGCCAAAGTG....................................................................................................GCATTAGCACTCGGGCAGAACTTTGAGAAATATGAGAATGATGATAATGCTGATTTTGTAATCATCAAG..............................................................................................................................................................................................................................................................................................................GGGGCTGGTCGTACTTTTTCTGCTGGTGGAGACTTACATATGTTCTATGATGGACGAAACACAA...........................................................................................................................GGGATTCTGGCATTGAATGTATTTATAGAATGTATTGGCTTTGCTACCACATTCATACTTACAAGAAACCGCATATTGCTCTTGTTCATGGAATGTCAGTGGGTGGGGGTGCATCCTTGATGACTCCAATGAAATTCTCTGTCGTCACTGAGAAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545342" ref_strand="+" ref_description="SGN-E545342 [TUS-68-C7](-)">
      <seq>tgaacaagttgtccataatcaatgagtgtttctccaagaattctgtggaggaaattatcgagtcatttgaagctgagggaaacagaaaaggaaatgattggataatgccagtacttaaaagactaaagagagcatctccaacatcattaaaaataacattgagatcgatacgagaaggaagaacccaacctatttctgaatgtttgaggagagaatttagaatttcaataaacatacaacgaggcataatatctggtgacttttatgagggcataagggctcaggtaattgacaaggataagtctccaaagtggaacccttcaactcttgacaaagtgcatgatgatcaacttgacttaatcttcaagccatttgaaaatcatgacttggaacttcaaattcctgttgatgaagaagaattatacaggtggagaggaaaatatgaataattccagctattctcatctcaaccaagtgaacgttcaaaaggcattcccatcagtgtcgtcttgtgaaagtgtctttgtataacttgttttttgttattagtaacatacaacaaagtatatagttattagttccaaaacatatatgcaagtattcgtgatctccaaataatataatgatttgtagtcagatattgttctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0088K03.1" temp_strand="+" temp_description="C07SLe0088K03.1  AC234407.1 htgs_phase:1 submitted_to_sgn_as:gi|222136707|gb|AC234407.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0088K03, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="54103" stop="55944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54305" g_stop="54311" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54312" i_stop="54404" i_length="93">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54405" g_stop="54465" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="68" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54466" i_stop="54579" i_length="114">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54580" g_stop="54678" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="167" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54679" i_stop="54788" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54789" g_stop="54890" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="269" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54891" i_stop="55009" i_length="119">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55010" g_stop="55051" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="311" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55052" i_stop="55152" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55153" g_stop="55268" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="427" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55269" i_stop="55422" i_length="154">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55423" g_stop="55643" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="648" r_length="221" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="687"/>
      <MATCH_line gen_id="C07SLe0088K03.1" gen_strand="+" ref_id="SGN-E545342" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0088K03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54305" e_stop="54311"/>
          <exon e_start="54405" e_stop="54465"/>
          <exon e_start="54580" e_stop="54678"/>
          <exon e_start="54789" e_stop="54890"/>
          <exon e_start="55010" e_stop="55051"/>
          <exon e_start="55153" e_stop="55268"/>
          <exon e_start="55423" e_stop="55643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAAGTAATGTCTCATATAATTAAATTATTATTTTGAAATTTTGCTTTGAAATGAAATGTTGAGAGTAACATTTTTATTTTTCAAATTTATGTGTAGGTTGTCCATAATCAATGAGTGTTTCTCCAAGAATTCTGTGGAGGAAATTATCGAGTCATTTGTAAGAATTCATTTTTCTAATTACATGATATTTTTAAAAATTTCTACCACATTGCATACTAAGTGATAAAATATTCAATTTTTTTAAATGTATTTTCTGCACTAACTTTTTCAGGAAGCTGAGGGAAACAGAAAAGGAAATGATTGGATAATGCCAGTACTTAAAAGACTAAAGAGAGCATCTCCAACATCATTAAAAATAACATTGAGATCGGTAATAAATCTTTTATTATGCTTATTGAACTAGAAAAATAACTTTATCAAGCACTCAAAACTTTATAAGCATACAAAAATAACCTTACCTTTATTCCTATGTTTTTTTAGATACGAGAAGGAAGAACACAAACTATATCTGAATGTTTGAGGAGAGAATTTAGAATTTCAATAAACATACAACGAGGCATAATATCTGGTGACTTTTATGAGGTAATTAGTTTACAAAATCGTTTAAGTTAACTCAATCTTATCATGTACATCATATGTAGAAGCACACTTAATTTGCGATTACTAATTTAAAGTTCATGAAATATTTTTCACATATGAAGGGCATAAGGGCTCAGGTAATTGACAAGGATAAGTCTCCAAAGGTATGCACCTTTTTTTCTTAGTATATAAGTAATACTTAGTATTTATCAATATTGAATCATGTGCTTTATTATTAAAATATTTCTCTTTCATTTTTATATAGTGGAACCCTTCAACTCTTGACAAAGTGCATGATGATCAACTTGACTTAATCTTCAAGCCATTTGAAGATCATGACTTGGAACTTCAAATTCCTGTTGATGAAGAAGAATTATACAGGTTTGAATATTGGAGTGATCATATATCAGTTGCATTTTATCCAACAATAGATTTTGCAATATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTAATAGTCATTAATCTTGCATATATTTGATCTAATAATTAACAGGTGGAGAGGAAAATATGAATAATTCCAACTATTCTCATCTCAACCAAGTGAACGTTCAAAAGGCATTCCCATCAGTGTCGTCTTGTGAAAGTGTCTTTGTATAACTTGTTTTTTGTTATTAGTAACATACAACAAAGTATATAGTTATTTGTTCCAAAACATATATGCAAGTATTCGTGATCTCCAAATAATATAATGATTTGTAGTCAGATATTGATCTC</genome_strand>
        <mrna_strand>TGAACAA.............................................................................................GTTGTCCATAATCAATGAGTGTTTCTCCAAGAATTCTGTGGAGGAAATTATCGAGTCATTT..................................................................................................................GAAGCTGAGGGAAACAGAAAAGGAAATGATTGGATAATGCCAGTACTTAAAAGACTAAAGAGAGCATCTCCAACATCATTAAAAATAACATTGAGATCG..............................................................................................................ATACGAGAAGGAAGAACCCAACCTATTTCTGAATGTTTGAGGAGAGAATTTAGAATTTCAATAAACATACAACGAGGCATAATATCTGGTGACTTTTATGAG.......................................................................................................................GGCATAAGGGCTCAGGTAATTGACAAGGATAAGTCTCCAAAG.....................................................................................................TGGAACCCTTCAACTCTTGACAAAGTGCATGATGATCAACTTGACTTAATCTTCAAGCCATTTGAAAATCATGACTTGGAACTTCAAATTCCTGTTGATGAAGAAGAATTATACAG..........................................................................................................................................................GTGGAGAGGAAAATATGAATAATTCCAGCTATTCTCATCTCAACCAAGTGAACGTTCAAAAGGCATTCCCATCAGTGTCGTCTTGTGAAAGTGTCTTTGTATAACTTGTTTTTTGTTATTAGTAACATACAACAAAGTATATAGTTATTAGTTCCAAAACATATATGCAAGTATTCGTGATCTCCAAATAATATAATGATTTGTAGTCAGATATTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0088K03.1" temp_strand="-" temp_description="C07SLe0088K03.1  AC234407.1 htgs_phase:1 submitted_to_sgn_as:gi|222136707|gb|AC234407.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0088K03, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="71914" stop="71014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71614" g_stop="71314" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0088K03.1" gen_strand="-" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0088K03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71614" e_stop="71314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTTCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCTAAAAGTCTCTGTATGGGCTCAAGCAAGCCCTCCGTGCTTGGTACACACGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0088K03.1" temp_strand="-" temp_description="C07SLe0088K03.1  AC234407.1 htgs_phase:1 submitted_to_sgn_as:gi|222136707|gb|AC234407.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0088K03, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="72366" stop="71255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72066" g_stop="71555" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0088K03.1" gen_strand="-" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.053" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0088K03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72066" e_stop="71555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAATCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCATTTTGGGTCCTTCCCTGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCTAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAAGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCGACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGTTTTGATTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTTCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAAC-A---AC-C---T-ACTC------TG----TT-GC--C-T-C-A-AAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545342" ref_strand="+" ref_description="SGN-E545342 [TUS-68-C7](-)">
      <seq>tgaacaagttgtccataatcaatgagtgtttctccaagaattctgtggaggaaattatcgagtcatttgaagctgagggaaacagaaaaggaaatgattggataatgccagtacttaaaagactaaagagagcatctccaacatcattaaaaataacattgagatcgatacgagaaggaagaacccaacctatttctgaatgtttgaggagagaatttagaatttcaataaacatacaacgaggcataatatctggtgacttttatgagggcataagggctcaggtaattgacaaggataagtctccaaagtggaacccttcaactcttgacaaagtgcatgatgatcaacttgacttaatcttcaagccatttgaaaatcatgacttggaacttcaaattcctgttgatgaagaagaattatacaggtggagaggaaaatatgaataattccagctattctcatctcaaccaagtgaacgttcaaaaggcattcccatcagtgtcgtcttgtgaaagtgtctttgtataacttgttttttgttattagtaacatacaacaaagtatatagttattagttccaaaacatatatgcaagtattcgtgatctccaaataatataatgatttgtagtcagatattgttctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0088K03.1" temp_strand="-" temp_description="C07SLe0088K03.1  AC234407.1 htgs_phase:1 submitted_to_sgn_as:gi|222136707|gb|AC234407.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0088K03, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="86249" stop="84426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86047" g_stop="86041" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86040" i_stop="85948" i_length="93">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85947" g_stop="85887" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="68" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85886" i_stop="85773" i_length="114">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85772" g_stop="85674" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="167" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85673" i_stop="85564" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85563" g_stop="85462" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="269" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85461" i_stop="85343" i_length="119">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85342" g_stop="85301" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="311" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85300" i_stop="85200" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85199" g_stop="85084" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="427" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85083" i_stop="84948" i_length="136">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="84947" g_stop="84727" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="648" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="687"/>
      <MATCH_line gen_id="C07SLe0088K03.1" gen_strand="-" ref_id="SGN-E545342" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0088K03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86047" e_stop="86041"/>
          <exon e_start="85947" e_stop="85887"/>
          <exon e_start="85772" e_stop="85674"/>
          <exon e_start="85563" e_stop="85462"/>
          <exon e_start="85342" e_stop="85301"/>
          <exon e_start="85199" e_stop="85084"/>
          <exon e_start="84947" e_stop="84727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAAGTAATGTCTCATATAATTAAATTATTATTTTGAAATTTTGCTTTGAAATGAAATGTTGAGAGTAACATTTTTATTTTTCAAATTTATGTGTAGGTTGTCCATAATCAATGAGTGTTTCTCCAAGAATTCTGTGGAGGAAATTATCGAGTCATTTGTAAGAATTCATTTTTCTAATTACATGATATTTTTAAAAATTTCTACCACATTGCATACTAAGTGATAAAATATTCAATTTTTTTAAATGTATTTTCTGCACTAACTTTTTCAGGAAGCTGAGGGAAACAGAAAAGGAAATGATTGGATAATGCCAGTACTTAAAAGACTAAAGAGAGCATCTCCAACATCATTAAAAATAACATTGAGATCGGTAATAAATCTTTTATTATGCTTATTGAACTAGAAAAATAACTTTATCAAGCACTCAAAACTTTATAAGCATACAAAAATAACCTTACCTTTATTCCTATGTTTTTTTAGATACGAGAAGGAAGAACACAAACTATATCTGAATGTTTGAGGAGAGAATTTAGAATTTCAATAAACATACAACGAGGCATAATATCTGGTGACTTTTATGAGGTAATTAGTTTACAAAATCGTTTAAGTTAACTCAATCTTATCATGTACATCATATGTAGAAGCACACTTAATTTGCGATTACTAATTTAAAGTTCATGAAATATTTTTCACATATGAAGGGCATAAGGGCTCAGGTAATTGACAAGGATAAGTCTCCAAAGGTATGCACCTTTTTTTCTTAGTATATAAGTAATACTTAGTATTTATCAATATTGAATCATGTGCTTTATTATTAAAATATTTCTCTTTCATTTTTATATAGTGGAACCCTTCAACTCTTGACAAAGTGCATGATGATCAACTTGACTTAATCTTCAAGCCATTTGAAAATCATGACTTGGAACTTCAAATTCCTGTTGATGAAGAAGAATTATACAGGTTTGAATATTGGAGTGATCATATATCAGTTGCATTTTATCCAACAATAGATTATGCAATATATTATTATTATTATTATTATTATTATTATTTAATAGTCATTAATCTTGCATATATTTGATCTAATAATTAACAGGTGGAGAGGAAAATATGAATAATTCCAGCTATTCTCATCTCAACCAAGTGAACGTTCAAAAGGCATTCCCATCAGTGTCGTCTTGTGAAAGTGTCTTTGTATAACTTGTTTTTTGTTATTAGTAACATACAACAAAGTATATAGTTATTAGTTCCAAAACATATATGCAAGTATTCGTGATCTCCAAATAATATAATGATTTGTAGTCAGATATTGATCTC</genome_strand>
        <mrna_strand>TGAACAA.............................................................................................GTTGTCCATAATCAATGAGTGTTTCTCCAAGAATTCTGTGGAGGAAATTATCGAGTCATTT..................................................................................................................GAAGCTGAGGGAAACAGAAAAGGAAATGATTGGATAATGCCAGTACTTAAAAGACTAAAGAGAGCATCTCCAACATCATTAAAAATAACATTGAGATCG..............................................................................................................ATACGAGAAGGAAGAACCCAACCTATTTCTGAATGTTTGAGGAGAGAATTTAGAATTTCAATAAACATACAACGAGGCATAATATCTGGTGACTTTTATGAG.......................................................................................................................GGCATAAGGGCTCAGGTAATTGACAAGGATAAGTCTCCAAAG.....................................................................................................TGGAACCCTTCAACTCTTGACAAAGTGCATGATGATCAACTTGACTTAATCTTCAAGCCATTTGAAAATCATGACTTGGAACTTCAAATTCCTGTTGATGAAGAAGAATTATACAG........................................................................................................................................GTGGAGAGGAAAATATGAATAATTCCAGCTATTCTCATCTCAACCAAGTGAACGTTCAAAAGGCATTCCCATCAGTGTCGTCTTGTGAAAGTGTCTTTGTATAACTTGTTTTTTGTTATTAGTAACATACAACAAAGTATATAGTTATTAGTTCCAAAACATATATGCAAGTATTCGTGATCTCCAAATAATATAATGATTTGTAGTCAGATATTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549191" ref_strand="+" ref_description="SGN-E549191 [TUS-68-C7]">
      <seq>tttttctccagtactaaatcaacctaattaagttgatatggcaataatatctattcctagtagcaccacaatgtttccaatgcctcaacaagtattgagacgaaataaagaggttgttatggctgaggaaatgggttgcgctagaatgctcaccttgaatcggcctgataatttaaattatatatcagccaaagtggcattagcactcgggcagaactttgagaaatatgagaatgatgataatgctgattttgtaatcatcaagggggctggtcgtactttttctgctggtggagacttacatatgttctatgatggacgaaacacaagggattctggcattgaatgtatttatagaatgtattggctttgctaccacattcatacttacaagaaaccgcatattgctcttgttcatggaatgtcagtgggtgggggtgcatccttgatgactccaatgaaattctctgtcgtcactgagaaagcgtttagttctactcctgaaataaatatagggttccatccagactgtggcttctcctatatgcttccgcgtcttccaggccgactaggggaatacgtgggcttaacaggagaaaaactaaggggtaaagaagtggttgctgctggactagccactcattttgttccttcacagaaattatttcagttggagaagcgtttgatgaccctaaaaatggagatgaggatancattagatcagtcatcaatgaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0088K03.1" temp_strand="-" temp_description="C07SLe0088K03.1  AC234407.1 htgs_phase:1 submitted_to_sgn_as:gi|222136707|gb|AC234407.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0088K03, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="87981" stop="85780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87872" g_stop="87791" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="112" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87790" i_stop="87684" i_length="107">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87683" g_stop="87600" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="196" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87599" i_stop="87500" i_length="100">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87499" g_stop="87431" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="265" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87430" i_stop="87129" i_length="302">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87128" g_stop="87065" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="329" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87064" i_stop="86942" i_length="123">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86941" g_stop="86784" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="487" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86783" i_stop="86675" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86674" g_stop="86590" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="572" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86589" i_stop="86461" i_length="129">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86460" g_stop="86375" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="658" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="86374" i_stop="86163" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="86162" g_stop="86080" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="740" r_length="82" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0088K03.1" gen_strand="-" ref_id="SGN-E549191" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0088K03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87872" e_stop="87791"/>
          <exon e_start="87683" e_stop="87600"/>
          <exon e_start="87499" e_stop="87431"/>
          <exon e_start="87128" e_stop="87065"/>
          <exon e_start="86941" e_stop="86784"/>
          <exon e_start="86674" e_stop="86590"/>
          <exon e_start="86460" e_stop="86375"/>
          <exon e_start="86162" e_stop="86080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGATATGGCAATAATATCTATTCCTAGTAGCACCACAATGTTTCCAATGCCTCAACAAGTATTGAGACAAAATAAAGAGGTAATTACAACGTTACTAAAACAACTTATTAATGTCAAAAATATTATTCGATATTATCGATCTTCGGTCCGATATATGTAGCTTAATATATCTTTGGTTGTCATTAGGTTGTTATGGCTGAGGAAATGGGTTGCGCTAGAATGCTCACCTTGAATCGGCCTGATAATTTAAATTATATATCAGCCAAAGTGGTATATATTTAATAATTTATACTATATACTATATATGTATGGTTATAAAATGGCTATTGCAATGTTCACCTTAATTATAAAATTTCTTTTAAATAATTAGGCATTAGCACTCGGGCAGAACTTTGAGAAATATGAGAATGATGATAATGCTGATTTTGTAATCATCAAGGTAAGGACTTATTTAAGAAGTATCTATTTTGCTTTTTTTTTCTTTTTCTTTTATAACGCATAAACGTGTCCTTTTTACTTGGTATTGGCTGACATCTATACCTTGGAATGTGCACAAACAGACACACATACGACGTCATGTAATATGCAAATTATCATGTAGGATCGACGTGCATGGGTGTCTATTTGTTTAATTGTTGGAAGGCAATAACTGTCTGTTATAAGAACAAGTTAAAAGACATTTATATGTATTATATCTTTTGATTTTGCCAATTTAATTCTCATTAATTTGCACATATATAGGGGGCTGGTCGTACTTTTTCTGCTGGTGGAGACTTACATATGTTCTATGATGGACGAAACACAAGTAACTATTTTTTTTCATTTGTTACTATATATATGTCAGAACTATACTATTATTGAAATTATTAATTAATTACTACATGTTCAATTCATTTAAACTAATGAGTATATTAATTGTTTGAATTAGGGGATTCTGGCATTGAATGTATTTATAGAATGTATTGGCTTTGCTACCACATTCATACTTACAAGAAACCGCATATTGCTCTTGTTCATGGAATGTCAGTGGGTGGGGGTGCATCCTTGATGACTCCAATGAAATTCTCTGTCGTCACTGAGAAAGCGGTCAGTACATATATCGTATACTTATCTTATAAATGATGATTTGATTGTACGAATTCTATCGATATTTAATTTCAAGTCGTCTAACCTTTTTGTTGATGTAACTTTACAGTTTAGTTCTACTCCTGAAATAAATATAGGGTTCCATCCAGACTGTGGCTTCTCCTATATGCTTCCGCGTCTTCCAGGCCGACTAGGTAATTAAGCGCTAGACTTGACTCCTACCTTGTATATTAATACCGAATAATAATATATATGTAAAAGAGAAAGTACCTCTCCAAAAATATGTTAATTAATTAATTACATGTATGTATGTATATATGTAGGGGAATACGTGGGCTTAACAGGAGAAAAACTAAGGGGTAAAGAAGTGGTTGCTGCTGGACTAGCCACTCATTTTGTTCCTTCACAGGTTAGTCCAAGCTTTTCCTTTTCTTCAGAAATTCACCATACACTACAATAAATACAGAAATATTTATATTTAGCGGTAATAATATAATATGAATATATTCATAACCAACACTTTATGTGGCTCATGAATTACCGTAAGTTTTATATTGCCACTAAAAAGTTTTATTGTCTTTAATTATCTCTTTTGCTCATAATTTTTTTTTCAAATGCCAGAAATTATTTCAGTTGGAGAAGCGTTTGATGACCCTAAAAAATGGAGATGAGGATACAATTAGATCAGTCATCAATGAATTTTC</genome_strand>
        <mrna_strand>AGTTGATATGGCAATAATATCTATTCCTAGTAGCACCACAATGTTTCCAATGCCTCAACAAGTATTGAGACGAAATAAAGAG...........................................................................................................GTTGTTATGGCTGAGGAAATGGGTTGCGCTAGAATGCTCACCTTGAATCGGCCTGATAATTTAAATTATATATCAGCCAAAGTG....................................................................................................GCATTAGCACTCGGGCAGAACTTTGAGAAATATGAGAATGATGATAATGCTGATTTTGTAATCATCAAG..............................................................................................................................................................................................................................................................................................................GGGGCTGGTCGTACTTTTTCTGCTGGTGGAGACTTACATATGTTCTATGATGGACGAAACACAA...........................................................................................................................GGGATTCTGGCATTGAATGTATTTATAGAATGTATTGGCTTTGCTACCACATTCATACTTACAAGAAACCGCATATTGCTCTTGTTCATGGAATGTCAGTGGGTGGGGGTGCATCCTTGATGACTCCAATGAAATTCTCTGTCGTCACTGAGAAAGCG.............................................................................................................TTTAGTTCTACTCCTGAAATAAATATAGGGTTCCATCCAGACTGTGGCTTCTCCTATATGCTTCCGCGTCTTCCAGGCCGACTAG.................................................................................................................................GGGAATACGTGGGCTTAACAGGAGAAAAACTAAGGGGTAAAGAAGTGGTTGCTGCTGGACTAGCCACTCATTTTGTTCCTTCACAG....................................................................................................................................................................................................................AAATTATTTCAGTTGGAGAAGCGTTTGATGACCCT-AAAAATGGAGATGAGGATANCATTAGATCAGTCATCAATGAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309884" ref_strand="+" ref_description="SGN-E309884 [cLEZ-10-E19]">
      <seq>ttttctccagtactaaatcaacctaattaagttgatatggcaataatatctattcctagtagcaccacaatgtttccaatgcctcaacaagtattgagacgaaataaagaggttgttatggctgaggaaatgggttgcgctagaatgctcaccttgaatcggcctgataatttaaattatatatcagccaaagtggcattagcactcgggcagaactttgagaaatatgagaatgatgataatgctgattttgtaatcatcaagggggctggtcgtactttttctgctggtggagacttacatatgttctatgatggacgaaacacaagggattctggcattgaatgtatttatagaatgtattggctttgctaccacattcatacttacaagaaaccgcatattgctcttgttcatggaatgtcagtgggtgggggtgcatccttgatgactccaatgaaattctctgtcgtcactgagaaagcgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0088K03-yO9Jx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0088K03.1" temp_strand="-" temp_description="C07SLe0088K03.1  AC234407.1 htgs_phase:1 submitted_to_sgn_as:gi|222136707|gb|AC234407.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0088K03, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="87981" stop="86482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87872" g_stop="87791" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="111" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87790" i_stop="87684" i_length="107">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87683" g_stop="87600" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="195" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87599" i_stop="87500" i_length="100">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87499" g_stop="87431" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="264" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87430" i_stop="87129" i_length="302">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87128" g_stop="87065" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="328" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87064" i_stop="86942" i_length="123">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86941" g_stop="86784" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="486" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0088K03.1" gen_strand="-" ref_id="SGN-E309884" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0088K03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87872" e_stop="87791"/>
          <exon e_start="87683" e_stop="87600"/>
          <exon e_start="87499" e_stop="87431"/>
          <exon e_start="87128" e_stop="87065"/>
          <exon e_start="86941" e_stop="86784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGATATGGCAATAATATCTATTCCTAGTAGCACCACAATGTTTCCAATGCCTCAACAAGTATTGAGACAAAATAAAGAGGTAATTACAACGTTACTAAAACAACTTATTAATGTCAAAAATATTATTCGATATTATCGATCTTCGGTCCGATATATGTAGCTTAATATATCTTTGGTTGTCATTAGGTTGTTATGGCTGAGGAAATGGGTTGCGCTAGAATGCTCACCTTGAATCGGCCTGATAATTTAAATTATATATCAGCCAAAGTGGTATATATTTAATAATTTATACTATATACTATATATGTATGGTTATAAAATGGCTATTGCAATGTTCACCTTAATTATAAAATTTCTTTTAAATAATTAGGCATTAGCACTCGGGCAGAACTTTGAGAAATATGAGAATGATGATAATGCTGATTTTGTAATCATCAAGGTAAGGACTTATTTAAGAAGTATCTATTTTGCTTTTTTTTTCTTTTTCTTTTATAACGCATAAACGTGTCCTTTTTACTTGGTATTGGCTGACATCTATACCTTGGAATGTGCACAAACAGACACACATACGACGTCATGTAATATGCAAATTATCATGTAGGATCGACGTGCATGGGTGTCTATTTGTTTAATTGTTGGAAGGCAATAACTGTCTGTTATAAGAACAAGTTAAAAGACATTTATATGTATTATATCTTTTGATTTTGCCAATTTAATTCTCATTAATTTGCACATATATAGGGGGCTGGTCGTACTTTTTCTGCTGGTGGAGACTTACATATGTTCTATGATGGACGAAACACAAGTAACTATTTTTTTTCATTTGTTACTATATATATGTCAGAACTATACTATTATTGAAATTATTAATTAATTACTACATGTTCAATTCATTTAAACTAATGAGTATATTAATTGTTTGAATTAGGGGATTCTGGCATTGAATGTATTTATAGAATGTATTGGCTTTGCTACCACATTCATACTTACAAGAAACCGCATATTGCTCTTGTTCATGGAATGTCAGTGGGTGGGGGTGCATCCTTGATGACTCCAATGAAATTCTCTGTCGTCACTGAGAAAGCG</genome_strand>
        <mrna_strand>AGTTGATATGGCAATAATATCTATTCCTAGTAGCACCACAATGTTTCCAATGCCTCAACAAGTATTGAGACGAAATAAAGAG...........................................................................................................GTTGTTATGGCTGAGGAAATGGGTTGCGCTAGAATGCTCACCTTGAATCGGCCTGATAATTTAAATTATATATCAGCCAAAGTG....................................................................................................GCATTAGCACTCGGGCAGAACTTTGAGAAATATGAGAATGATGATAATGCTGATTTTGTAATCATCAAG..............................................................................................................................................................................................................................................................................................................GGGGCTGGTCGTACTTTTTCTGCTGGTGGAGACTTACATATGTTCTATGATGGACGAAACACAA...........................................................................................................................GGGATTCTGGCATTGAATGTATTTATAGAATGTATTGGCTTTGCTACCACATTCATACTTACAAGAAACCGCATATTGCTCTTGTTCATGGAATGTCAGTGGGTGGGGGTGCATCCTTGATGACTCCAATGAAATTCTCTGTCGTCACTGAGAAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="50960" PGL_stop="51726"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50960" e_stop="51230"/>
            <exon e_start="51294" e_stop="51726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.000" e_score="0.911"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="50960" e_stop="51230" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.000">
            <gDNA_intron_boundary i_start="51231" i_stop="51293" i_length="63"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="51294" e_stop="51726" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50960" stop="51230"/>
              <exon start="51294" stop="51726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344783" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCATTTTCCAAAATAACATTAAGGACATGAGCATTTTATTTGATCTTCTATAGCTCTCTTTTTAAAAGCAAATTCCAAAAACTAATTCAAACCAACCACAGATTCTTTTGTGGTCCTTGGCATTCTAATCCAAGATTTATCCATCGAAAAAAACAAGAATAGCAGACAATATCACCTATAAGATTTTCATGAGAAAATTATAAGGTTATAGTGATATTTAACAATTTTATGTACCAGCTAATGCATAAATGGAGTATATGCAGAAGAGG : TCATAATGTTTTCTATTTCATGTCAAAATTGTAACATAATGAACACAGGAAGTGGATGTGGATTTACTAAACAACAAGTGAGAGAAAATGTCTATTTTTTCTCTATTTAGTACTACTGTGTAAGCGCACCTGAATTATTTACAGGCTTGTACTCGATATTCAATCAATTTGTGTATGTAATAACTTATTCGGCAGAAACTCATTGATTTATTTTGTAAGTAAAATAAAACAGATAGGTGAGATTGAGAAAGCTCAGCATCAGCATCAGCAAACTTACTTGATACTAGGAAATTCATCAAGATATCATGAAAGAGTACCAACAAATATCAAAAAGGGGTCAGAGTACCTCAACTTTCTTTATCCTTAAACAAACAAGATCTAGCAGCTCTCCAGTTCCAGATCCAATTCAAGATAAAGCAAATATTGAAAGGGG</gDNA_template>
            <first_frame> Y  H  F  P  K  *  H  *  G  H  E  H  F  I  *  S  S  I  A  L  F  L  K  A  N  S  K  N  *  F  K  P  T  T  D  S  F  V  V  L  G  I  L  I  Q  D  L  S  I  E  K  N  K  N  S  R  Q  Y  H  L  *  D  F  H  E  K  I  I  R  L  *  *  Y  L  T  I  L  C  T  S  *  C  I  N  G  V  Y  A  E  E   : V  I  M  F  S  I  S  C  Q  N  C  N  I  M  N  T  G  S  G  C  G  F  T  K  Q  Q  V  R  E  N  V  Y  F  F  S  I  *  Y  Y  C  V  S  A  P  E  L  F  T  G  L  Y  S  I  F  N  Q  F  V  Y  V  I  T  Y  S  A  E  T  H  *  F  I  L  *  V  K  *  N  R  *  V  R  L  R  K  L  S  I  S  I  S  K  L  T  *  Y  *  E  I  H  Q  D  I  M  K  E  Y  Q  Q  I  S  K  R  G  Q  S  T  S  T  F  F  I  L  K  Q  T  R  S  S  S  S  P  V  P  D  P  I  Q  D  K  A  N  I  E  R   </first_frame>
            <second_frame>  T  I  F  Q  N  N  I  K  D  M  S  I  L  F  D  L  L  *  L  S  F  *  K  Q  I  P  K  T  N  S  N  Q  P  Q  I  L  L  W  S  L  A  F  *  S  K  I  Y  P  S  K  K  T  R  I  A  D  N  I  T  Y  K  I  F  M  R  K  L  *  G  Y  S  D  I  *  Q  F  Y  V  P  A  N  A  *  M  E  Y  M  Q  K  R  :  S  *  C  F  L  F  H  V  K  I  V  T  *  *  T  Q  E  V  D  V  D  L  L  N  N  K  *  E  K  M  S  I  F  S  L  F  S  T  T  V  *  A  H  L  N  Y  L  Q  A  C  T  R  Y  S  I  N  L  C  M  *  *  L  I  R  Q  K  L  I  D  L  F  C  K  *  N  K  T  D  R  *  D  *  E  S  S  A  S  A  S  A  N  L  L  D  T  R  K  F  I  K  I  S  *  K  S  T  N  K  Y  Q  K  G  V  R  V  P  Q  L  S  L  S  L  N  K  Q  D  L  A  A  L  Q  F  Q  I  Q  F  K  I  K  Q  I  L  K  G  </second_frame>
            <third_frame>   P  F  S  K  I  T  L  R  T  *  A  F  Y  L  I  F  Y  S  S  L  F  K  S  K  F  Q  K  L  I  Q  T  N  H  R  F  F  C  G  P  W  H  S  N  P  R  F  I  H  R  K  K  Q  E  *  Q  T  I  S  P  I  R  F  S  *  E  N  Y  K  V  I  V  I  F  N  N  F  M  Y  Q  L  M  H  K  W  S  I  C  R  R  G :   H  N  V  F  Y  F  M  S  K  L  *  H  N  E  H  R  K  W  M  W  I  Y  *  T  T  S  E  R  K  C  L  F  F  L  Y  L  V  L  L  C  K  R  T  *  I  I  Y  R  L  V  L  D  I  Q  S  I  C  V  C  N  N  L  F  G  R  N  S  L  I  Y  F  V  S  K  I  K  Q  I  G  E  I  E  K  A  Q  H  Q  H  Q  Q  T  Y  L  I  L  G  N  S  S  R  Y  H  E  R  V  P  T  N  I  K  K  G  S  E  Y  L  N  F  L  Y  P  *  T  N  K  I  *  Q  L  S  S  S  R  S  N  S  R  *  S  K  Y  *  K  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0088K03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51427" stop="51660"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIYRLVLDIQSICVCNNLFGRNSLIYFVSKIKQIGEIEKAQHQHQQTYLILGNSSRYHERVPTNIKKGSEYLNFLYP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="52450" PGL_stop="54272"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52450" e_stop="52561"/>
            <exon e_start="52669" e_stop="52752"/>
            <exon e_start="52853" e_stop="52921"/>
            <exon e_start="53224" e_stop="53287"/>
            <exon e_start="53411" e_stop="53568"/>
            <exon e_start="53678" e_stop="53762"/>
            <exon e_start="53892" e_stop="53977"/>
            <exon e_start="54190" e_stop="54272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52450" e_stop="52561" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="52562" i_stop="52668" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52669" e_stop="52752" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52753" i_stop="52852" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52853" e_stop="52921" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="52922" i_stop="53223" i_length="302"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53224" e_stop="53287" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.889">
            <gDNA_intron_boundary i_start="53288" i_stop="53410" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53411" e_stop="53568" e_length="158"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.869">
            <gDNA_intron_boundary i_start="53569" i_stop="53677" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53678" e_stop="53762" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53763" i_stop="53891" i_length="129"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53892" e_stop="53977" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53978" i_stop="54189" i_length="212"/>
          </intron>
          <exon e_serial="8" e_score="0.964">
            <gDNA_exon_boundary e_start="54190" e_stop="54272" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52450" stop="52561"/>
              <exon start="52669" stop="52752"/>
              <exon start="52853" stop="52921"/>
              <exon start="53224" stop="53287"/>
              <exon start="53411" stop="53568"/>
              <exon start="53678" stop="53762"/>
              <exon start="53892" stop="53977"/>
              <exon start="54190" stop="54272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52451" stop="52561"/>
              <exon start="52669" stop="52752"/>
              <exon start="52853" stop="52921"/>
              <exon start="53224" stop="53287"/>
              <exon start="53411" stop="53568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTCTCCAGTACTAAATCAACCTAATTAAGTTGATATGGCAATAATATCTATTCCTAGTAGCACCACAATGTTTCCAATGCCTCAACAAGTATTGAGACGAAATAAAGAG : GTTGTTATGGCTGAGGAAATGGGTTGCGCTAGAATGCTCACCTTGAATCGGCCTGATAATTTAAATTATATATCAGCCAAAGTG : GCATTAGCACTCGGGCAGAACTTTGAGAAATATGAGAATGATGATAATGCTGATTTTGTAATCATCAAG : GGGGCTGGTCGTACTTTTTCTGCTGGTGGAGACTTACATATGTTCTATGATGGACGAAACACAA : GGGATTCTGGCATTGAATGTATTTATAGAATGTATTGGCTTTGCTACCACATTCATACTTACAAGAAACCGCATATTGCTCTTGTTCATGGAATGTCAGTGGGTGGGGGTGCATCCTTGATGACTCCAATGAAATTCTCTGTCGTCACTGAGAAAGCG : TTTAGTTCTACTCCTGAAATAAATATAGGGTTCCATCCAGACTGTGGCTTCTCCTATATGCTTCCGCGTCTTCCAGGCCGACTAG : GGGAATACGTGGGCTTAACAGGAGAAAAACTAAGGGGTAAAGAAGTGGTTGCTGCTGGACTAGCCACTCATTTTGTTCCTTCACAG : AAATTATTTCAGTTGGAGAAGCGTTTGATGACCCTAAAAAATGGAGATGAGGATACAATTAGATCAGTCATCAATGAATTTTC</gDNA_template>
            <first_frame> F  F  S  S  T  K  S  T  *  L  S  *  Y  G  N  N  I  Y  S  *  *  H  H  N  V  S  N  A  S  T  S  I  E  T  K  *  R   : G  C  Y  G  *  G  N  G  L  R  *  N  A  H  L  E  S  A  *  *  F  K  L  Y  I  S  Q  S   : G  I  S  T  R  A  E  L  *  E  I  *  E  *  *  *  C  *  F  C  N  H  Q   : G  G  W  S  Y  F  F  C  W  W  R  L  T  Y  V  L  *  W  T  K  H  K :   G  F  W  H  *  M  Y  L  *  N  V  L  A  L  L  P  H  S  Y  L  Q  E  T  A  Y  C  S  C  S  W  N  V  S  G  W  G  C  I  L  D  D  S  N  E  I  L  C  R  H  *  E  S   : V  *  F  Y  S  *  N  K  Y  R  V  P  S  R  L  W  L  L  L  Y  A  S  A  S  S  R  P  T  R :   G  I  R  G  L  N  R  R  K  T  K  G  *  R  S  G  C  C  W  T  S  H  S  F  C  S  F  T   : E  I  I  S  V  G  E  A  F  D  D  P  K  K  W  R  *  G  Y  N  *  I  S  H  Q  *  I  F </first_frame>
            <second_frame>  F  S  P  V  L  N  Q  P  N  *  V  D  M  A  I  I  S  I  P  S  S  T  T  M  F  P  M  P  Q  Q  V  L  R  R  N  K  E  :  V  V  M  A  E  E  M  G  C  A  R  M  L  T  L  N  R  P  D  N  L  N  Y  I  S  A  K  V  :  A  L  A  L  G  Q  N  F  E  K  Y  E  N  D  D  N  A  D  F  V  I  I  K  :  G  A  G  R  T  F  S  A  G  G  D  L  H  M  F  Y  D  G  R  N  T   : R  D  S  G  I  E  C  I  Y  R  M  Y  W  L  C  Y  H  I  H  T  Y  K  K  P  H  I  A  L  V  H  G  M  S  V  G  G  G  A  S  L  M  T  P  M  K  F  S  V  V  T  E  K  A  :  F  S  S  T  P  E  I  N  I  G  F  H  P  D  C  G  F  S  Y  M  L  P  R  L  P  G  R  L   : G  E  Y  V  G  L  T  G  E  K  L  R  G  K  E  V  V  A  A  G  L  A  T  H  F  V  P  S  Q  :  K  L  F  Q  L  E  K  R  L  M  T  L  K  N  G  D  E  D  T  I  R  S  V  I  N  E  F   </second_frame>
            <third_frame>   F  L  Q  Y  *  I  N  L  I  K  L  I  W  Q  *  Y  L  F  L  V  A  P  Q  C  F  Q  C  L  N  K  Y  *  D  E  I  K  R :   L  L  W  L  R  K  W  V  A  L  E  C  S  P  *  I  G  L  I  I  *  I  I  Y  Q  P  K  W :   H  *  H  S  G  R  T  L  R  N  M  R  M  M  I  M  L  I  L  *  S  S  R :   G  L  V  V  L  F  L  L  V  E  T  Y  I  C  S  M  M  D  E  T  Q  :  G  I  L  A  L  N  V  F  I  E  C  I  G  F  A  T  T  F  I  L  T  R  N  R  I  L  L  L  F  M  E  C  Q  W  V  G  V  H  P  *  *  L  Q  *  N  S  L  S  S  L  R  K  R :   L  V  L  L  L  K  *  I  *  G  S  I  Q  T  V  A  S  P  I  C  F  R  V  F  Q  A  D  *  :  G  N  T  W  A  *  Q  E  K  N  *  G  V  K  K  W  L  L  L  D  *  P  L  I  L  F  L  H  R :   N  Y  F  S  W  R  S  V  *  *  P  *  K  M  E  M  R  I  Q  L  D  Q  S  S  M  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0088K03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52481" stop="52561"/>
                    <exon start="52669" stop="52752"/>
                    <exon start="52853" stop="52921"/>
                    <exon start="53224" stop="53287"/>
                    <exon start="53411" stop="53568"/>
                    <exon start="53678" stop="53762"/>
                    <exon start="53892" stop="53977"/>
                    <exon start="54190" stop="54270"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDMAIISIPSSTTMFPMPQQVLRRNKEVVMAEEMGCARMLTLNRPDNLNYISAKVALALGQNFEKYENDDNADFVIIKGAGRTFSAGGDLHMFYDGRNTRDSGIECIYRMYWLCYHIHTYKKPHIALVHGMSVGGGASLMTPMKFSVVTEKAFSSTPEINIGFHPDCGFSYMLPRLPGRLGEYVGLTGEKLRGKEVVAAGLATHFVPSQKLFQLEKRLMTLKNGDEDTIRSVINEF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="54305" PGL_stop="55643"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54305" e_stop="54311"/>
            <exon e_start="54405" e_stop="54465"/>
            <exon e_start="54580" e_stop="54678"/>
            <exon e_start="54789" e_stop="54890"/>
            <exon e_start="55010" e_stop="55051"/>
            <exon e_start="55153" e_stop="55268"/>
            <exon e_start="55423" e_stop="55643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.889" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.958" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="0.991"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54305" e_stop="54311" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.889" acc_prob="0.974">
            <gDNA_intron_boundary i_start="54312" i_stop="54404" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54405" e_stop="54465" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54466" i_stop="54579" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54580" e_stop="54678" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.979">
            <gDNA_intron_boundary i_start="54679" i_stop="54788" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="54789" e_stop="54890" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.958">
            <gDNA_intron_boundary i_start="54891" i_stop="55009" i_length="119"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55010" e_stop="55051" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="55052" i_stop="55152" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="55153" e_stop="55268" e_length="116"/>
          </exon>
          <intron i_serial="6" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55269" i_stop="55422" i_length="154"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="55423" e_stop="55643" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54305" stop="54311"/>
              <exon start="54405" stop="54465"/>
              <exon start="54580" stop="54678"/>
              <exon start="54789" stop="54890"/>
              <exon start="55010" stop="55051"/>
              <exon start="55153" stop="55268"/>
              <exon start="55423" stop="55643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAACAA : GTTGTCCATAATCAATGAGTGTTTCTCCAAGAATTCTGTGGAGGAAATTATCGAGTCATTT : GAAGCTGAGGGAAACAGAAAAGGAAATGATTGGATAATGCCAGTACTTAAAAGACTAAAGAGAGCATCTCCAACATCATTAAAAATAACATTGAGATCG : ATACGAGAAGGAAGAACACAAACTATATCTGAATGTTTGAGGAGAGAATTTAGAATTTCAATAAACATACAACGAGGCATAATATCTGGTGACTTTTATGAG : GGCATAAGGGCTCAGGTAATTGACAAGGATAAGTCTCCAAAG : TGGAACCCTTCAACTCTTGACAAAGTGCATGATGATCAACTTGACTTAATCTTCAAGCCATTTGAAGATCATGACTTGGAACTTCAAATTCCTGTTGATGAAGAAGAATTATACAG : GTGGAGAGGAAAATATGAATAATTCCAACTATTCTCATCTCAACCAAGTGAACGTTCAAAAGGCATTCCCATCAGTGTCGTCTTGTGAAAGTGTCTTTGTATAACTTGTTTTTTGTTATTAGTAACATACAACAAAGTATATAGTTATTTGTTCCAAAACATATATGCAAGTATTCGTGATCTCCAAATAATATAATGATTTGTAGTCAGATATTGATCTC</gDNA_template>
            <first_frame> *  T   : S  C  P  *  S  M  S  V  S  P  R  I  L  W  R  K  L  S  S  H  L :   K  L  R  E  T  E  K  E  M  I  G  *  C  Q  Y  L  K  D  *  R  E  H  L  Q  H  H  *  K  *  H  *  D  R :   Y  E  K  E  E  H  K  L  Y  L  N  V  *  G  E  N  L  E  F  Q  *  T  Y  N  E  A  *  Y  L  V  T  F  M  R :   A  *  G  L  R  *  L  T  R  I  S  L  Q  S :   G  T  L  Q  L  L  T  K  C  M  M  I  N  L  T  *  S  S  S  H  L  K  I  M  T  W  N  F  K  F  L  L  M  K  K  N  Y  T   : G  G  E  E  N  M  N  N  S  N  Y  S  H  L  N  Q  V  N  V  Q  K  A  F  P  S  V  S  S  C  E  S  V  F  V  *  L  V  F  C  Y  *  *  H  T  T  K  Y  I  V  I  C  S  K  T  Y  M  Q  V  F  V  I  S  K  *  Y  N  D  L  *  S  D  I  D  L </first_frame>
            <second_frame>  E  Q  :  V  V  H  N  Q  *  V  F  L  Q  E  F  C  G  G  N  Y  R  V  I   : *  S  *  G  K  Q  K  R  K  *  L  D  N  A  S  T  *  K  T  K  E  S  I  S  N  I  I  K  N  N  I  E  I   : D  T  R  R  K  N  T  N  Y  I  *  M  F  E  E  R  I  *  N  F  N  K  H  T  T  R  H  N  I  W  *  L  L  *   : G  H  K  G  S  G  N  *  Q  G  *  V  S  K   : V  E  P  F  N  S  *  Q  S  A  *  *  S  T  *  L  N  L  Q  A  I  *  R  S  *  L  G  T  S  N  S  C  *  *  R  R  I  I  Q  :  V  E  R  K  I  *  I  I  P  T  I  L  I  S  T  K  *  T  F  K  R  H  S  H  Q  C  R  L  V  K  V  S  L  Y  N  L  F  F  V  I  S  N  I  Q  Q  S  I  *  L  F  V  P  K  H  I  C  K  Y  S  *  S  P  N  N  I  M  I  C  S  Q  I  L  I   </second_frame>
            <third_frame>   N  K :   L  S  I  I  N  E  C  F  S  K  N  S  V  E  E  I  I  E  S  F  :  E  A  E  G  N  R  K  G  N  D  W  I  M  P  V  L  K  R  L  K  R  A  S  P  T  S  L  K  I  T  L  R  S  :  I  R  E  G  R  T  Q  T  I  S  E  C  L  R  R  E  F  R  I  S  I  N  I  Q  R  G  I  I  S  G  D  F  Y  E  :  G  I  R  A  Q  V  I  D  K  D  K  S  P  K  :  W  N  P  S  T  L  D  K  V  H  D  D  Q  L  D  L  I  F  K  P  F  E  D  H  D  L  E  L  Q  I  P  V  D  E  E  E  L  Y  R :   W  R  G  K  Y  E  *  F  Q  L  F  S  S  Q  P  S  E  R  S  K  G  I  P  I  S  V  V  L  *  K  C  L  C  I  T  C  F  L  L  L  V  T  Y  N  K  V  Y  S  Y  L  F  Q  N  I  Y  A  S  I  R  D  L  Q  I  I  *  *  F  V  V  R  Y  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0088K03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54307" stop="54311"/>
                    <exon start="54405" stop="54465"/>
                    <exon start="54580" stop="54678"/>
                    <exon start="54789" stop="54890"/>
                    <exon start="55010" stop="55051"/>
                    <exon start="55153" stop="55268"/>
                    <exon start="55423" stop="55444"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKLSIINECFSKNSVEEIIESFEAEGNRKGNDWIMPVLKRLKRASPTSLKITLRSIREGRTQTISECLRREFRISINIQRGIISGDFYEGIRAQVIDKDKSPKWNPSTLDKVHDDQLDLIFKPFEDHDLELQIPVDEEELYRWRGKYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="72066" PGL_stop="71314"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72066" e_stop="71314"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="72066" e_stop="71314" e_length="753"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72066" stop="71555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71614" stop="71314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAATCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCATTTTGGGTCCTTCCCTGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCTAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAAGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCGACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGTTTTGATTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTTCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCTAAAAGTCTCTGTATGGGCTCAAGCAAGCCCTCCGTGCTTGGTACACACGTCTGAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  I  N  P  N  H  P  I  P  T  T  S  P  T  R  S  I  L  G  P  S  L  P  P  P  N  H  H  R  P  C  H  P  L  I  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  P  F  K  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  *  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  L  K  V  S  V  W  A  Q  A  S  P  P  C  L  V  H  T  S  E  N  V </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  S  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  C  H  P  R  I  T  T  A  R  A  T  P  *  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  S  S  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  R  L  C  C  L  K  K  C  L  L  A  S  C  Y  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  V  L  I  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  F  E  T  F  S  P  V  I  R  Q  E  T  I  R  L  V  L  S  L  A  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  *  K  S  L  Y  G  L  K  Q  A  L  R  A  W  Y  T  R  L  K  T   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  N  P  I  H  F  G  S  F  P  A  T  P  E  S  P  P  P  V  P  P  P  N  T  H  P  M  L  T  R  G  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  D  S  V  A  S  K  N  A  Y  W  R  H  A  I  K  M  L  I  G  V  M  L  W  M  T  S  L  R  F  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  S  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  K  S  L  C  M  G  S  S  K  P  S  V  L  G  T  H  V  *  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0088K03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71831" stop="71373"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNNRLCCLKKCLLASCYKNAYWRHAMDDEFKVLIDQKTWVLVPKPHGRHPVGCKWVYKIKHNADGSISRYKARLVAKGYNQEYGLDYFETFSPVIRQETIRLVLSLAVRNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVDPRFPQHVCKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="86047" PGL_stop="84727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86047" e_stop="86041"/>
            <exon e_start="85947" e_stop="85887"/>
            <exon e_start="85772" e_stop="85674"/>
            <exon e_start="85563" e_stop="85462"/>
            <exon e_start="85342" e_stop="85301"/>
            <exon e_start="85199" e_stop="85084"/>
            <exon e_start="84947" e_stop="84727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.889" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.958" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86047" e_stop="86041" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.889" acc_prob="0.974">
            <gDNA_intron_boundary i_start="86040" i_stop="85948" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85947" e_stop="85887" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85886" i_stop="85773" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85772" e_stop="85674" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.979">
            <gDNA_intron_boundary i_start="85673" i_stop="85564" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="85563" e_stop="85462" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.958">
            <gDNA_intron_boundary i_start="85461" i_stop="85343" i_length="119"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85342" e_stop="85301" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="85300" i_stop="85200" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85199" e_stop="85084" e_length="116"/>
          </exon>
          <intron i_serial="6" don_prob="0.927" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85083" i_stop="84948" i_length="136"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="84947" e_stop="84727" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86047" stop="86041"/>
              <exon start="85947" stop="85887"/>
              <exon start="85772" stop="85674"/>
              <exon start="85563" stop="85462"/>
              <exon start="85342" stop="85301"/>
              <exon start="85199" stop="85084"/>
              <exon start="84947" stop="84727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAACAA : GTTGTCCATAATCAATGAGTGTTTCTCCAAGAATTCTGTGGAGGAAATTATCGAGTCATTT : GAAGCTGAGGGAAACAGAAAAGGAAATGATTGGATAATGCCAGTACTTAAAAGACTAAAGAGAGCATCTCCAACATCATTAAAAATAACATTGAGATCG : ATACGAGAAGGAAGAACACAAACTATATCTGAATGTTTGAGGAGAGAATTTAGAATTTCAATAAACATACAACGAGGCATAATATCTGGTGACTTTTATGAG : GGCATAAGGGCTCAGGTAATTGACAAGGATAAGTCTCCAAAG : TGGAACCCTTCAACTCTTGACAAAGTGCATGATGATCAACTTGACTTAATCTTCAAGCCATTTGAAAATCATGACTTGGAACTTCAAATTCCTGTTGATGAAGAAGAATTATACAG : GTGGAGAGGAAAATATGAATAATTCCAGCTATTCTCATCTCAACCAAGTGAACGTTCAAAAGGCATTCCCATCAGTGTCGTCTTGTGAAAGTGTCTTTGTATAACTTGTTTTTTGTTATTAGTAACATACAACAAAGTATATAGTTATTAGTTCCAAAACATATATGCAAGTATTCGTGATCTCCAAATAATATAATGATTTGTAGTCAGATATTGATCTC</gDNA_template>
            <first_frame> *  T   : S  C  P  *  S  M  S  V  S  P  R  I  L  W  R  K  L  S  S  H  L :   K  L  R  E  T  E  K  E  M  I  G  *  C  Q  Y  L  K  D  *  R  E  H  L  Q  H  H  *  K  *  H  *  D  R :   Y  E  K  E  E  H  K  L  Y  L  N  V  *  G  E  N  L  E  F  Q  *  T  Y  N  E  A  *  Y  L  V  T  F  M  R :   A  *  G  L  R  *  L  T  R  I  S  L  Q  S :   G  T  L  Q  L  L  T  K  C  M  M  I  N  L  T  *  S  S  S  H  L  K  I  M  T  W  N  F  K  F  L  L  M  K  K  N  Y  T   : G  G  E  E  N  M  N  N  S  S  Y  S  H  L  N  Q  V  N  V  Q  K  A  F  P  S  V  S  S  C  E  S  V  F  V  *  L  V  F  C  Y  *  *  H  T  T  K  Y  I  V  I  S  S  K  T  Y  M  Q  V  F  V  I  S  K  *  Y  N  D  L  *  S  D  I  D  L </first_frame>
            <second_frame>  E  Q  :  V  V  H  N  Q  *  V  F  L  Q  E  F  C  G  G  N  Y  R  V  I   : *  S  *  G  K  Q  K  R  K  *  L  D  N  A  S  T  *  K  T  K  E  S  I  S  N  I  I  K  N  N  I  E  I   : D  T  R  R  K  N  T  N  Y  I  *  M  F  E  E  R  I  *  N  F  N  K  H  T  T  R  H  N  I  W  *  L  L  *   : G  H  K  G  S  G  N  *  Q  G  *  V  S  K   : V  E  P  F  N  S  *  Q  S  A  *  *  S  T  *  L  N  L  Q  A  I  *  K  S  *  L  G  T  S  N  S  C  *  *  R  R  I  I  Q  :  V  E  R  K  I  *  I  I  P  A  I  L  I  S  T  K  *  T  F  K  R  H  S  H  Q  C  R  L  V  K  V  S  L  Y  N  L  F  F  V  I  S  N  I  Q  Q  S  I  *  L  L  V  P  K  H  I  C  K  Y  S  *  S  P  N  N  I  M  I  C  S  Q  I  L  I   </second_frame>
            <third_frame>   N  K :   L  S  I  I  N  E  C  F  S  K  N  S  V  E  E  I  I  E  S  F  :  E  A  E  G  N  R  K  G  N  D  W  I  M  P  V  L  K  R  L  K  R  A  S  P  T  S  L  K  I  T  L  R  S  :  I  R  E  G  R  T  Q  T  I  S  E  C  L  R  R  E  F  R  I  S  I  N  I  Q  R  G  I  I  S  G  D  F  Y  E  :  G  I  R  A  Q  V  I  D  K  D  K  S  P  K  :  W  N  P  S  T  L  D  K  V  H  D  D  Q  L  D  L  I  F  K  P  F  E  N  H  D  L  E  L  Q  I  P  V  D  E  E  E  L  Y  R :   W  R  G  K  Y  E  *  F  Q  L  F  S  S  Q  P  S  E  R  S  K  G  I  P  I  S  V  V  L  *  K  C  L  C  I  T  C  F  L  L  L  V  T  Y  N  K  V  Y  S  Y  *  F  Q  N  I  Y  A  S  I  R  D  L  Q  I  I  *  *  F  V  V  R  Y  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0088K03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86045" stop="86041"/>
                    <exon start="85947" stop="85887"/>
                    <exon start="85772" stop="85674"/>
                    <exon start="85563" stop="85462"/>
                    <exon start="85342" stop="85301"/>
                    <exon start="85199" stop="85084"/>
                    <exon start="84947" stop="84926"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKLSIINECFSKNSVEEIIESFEAEGNRKGNDWIMPVLKRLKRASPTSLKITLRSIREGRTQTISECLRREFRISINIQRGIISGDFYEGIRAQVIDKDKSPKWNPSTLDKVHDDQLDLIFKPFENHDLELQIPVDEEELYRWRGKYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="87872" PGL_stop="86080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87872" e_stop="87791"/>
            <exon e_start="87683" e_stop="87600"/>
            <exon e_start="87499" e_stop="87431"/>
            <exon e_start="87128" e_stop="87065"/>
            <exon e_start="86941" e_stop="86784"/>
            <exon e_start="86674" e_stop="86590"/>
            <exon e_start="86460" e_stop="86375"/>
            <exon e_start="86162" e_stop="86080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.963"/>
          <exon-intron don_prob="0.891" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="87872" e_stop="87791" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87790" i_stop="87684" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87683" e_stop="87600" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87599" i_stop="87500" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87499" e_stop="87431" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="87430" i_stop="87129" i_length="302"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87128" e_stop="87065" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.889">
            <gDNA_intron_boundary i_start="87064" i_stop="86942" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86941" e_stop="86784" e_length="158"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.869">
            <gDNA_intron_boundary i_start="86783" i_stop="86675" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86674" e_stop="86590" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86589" i_stop="86461" i_length="129"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86460" e_stop="86375" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="86374" i_stop="86163" i_length="212"/>
          </intron>
          <exon e_serial="8" e_score="0.964">
            <gDNA_exon_boundary e_start="86162" e_stop="86080" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87872" stop="87791"/>
              <exon start="87683" stop="87600"/>
              <exon start="87499" stop="87431"/>
              <exon start="87128" stop="87065"/>
              <exon start="86941" stop="86784"/>
              <exon start="86674" stop="86590"/>
              <exon start="86460" stop="86375"/>
              <exon start="86162" stop="86080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87872" stop="87791"/>
              <exon start="87683" stop="87600"/>
              <exon start="87499" stop="87431"/>
              <exon start="87128" stop="87065"/>
              <exon start="86941" stop="86784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGATATGGCAATAATATCTATTCCTAGTAGCACCACAATGTTTCCAATGCCTCAACAAGTATTGAGACAAAATAAAGAG : GTTGTTATGGCTGAGGAAATGGGTTGCGCTAGAATGCTCACCTTGAATCGGCCTGATAATTTAAATTATATATCAGCCAAAGTG : GCATTAGCACTCGGGCAGAACTTTGAGAAATATGAGAATGATGATAATGCTGATTTTGTAATCATCAAG : GGGGCTGGTCGTACTTTTTCTGCTGGTGGAGACTTACATATGTTCTATGATGGACGAAACACAA : GGGATTCTGGCATTGAATGTATTTATAGAATGTATTGGCTTTGCTACCACATTCATACTTACAAGAAACCGCATATTGCTCTTGTTCATGGAATGTCAGTGGGTGGGGGTGCATCCTTGATGACTCCAATGAAATTCTCTGTCGTCACTGAGAAAGCG : TTTAGTTCTACTCCTGAAATAAATATAGGGTTCCATCCAGACTGTGGCTTCTCCTATATGCTTCCGCGTCTTCCAGGCCGACTAG : GGGAATACGTGGGCTTAACAGGAGAAAAACTAAGGGGTAAAGAAGTGGTTGCTGCTGGACTAGCCACTCATTTTGTTCCTTCACAG : AAATTATTTCAGTTGGAGAAGCGTTTGATGACCCTAAAAAATGGAGATGAGGATACAATTAGATCAGTCATCAATGAATTTTC</gDNA_template>
            <first_frame> Y  *  Y  G  N  N  I  Y  S  *  *  H  H  N  V  S  N  A  S  T  S  I  E  T  K  *  R   : G  C  Y  G  *  G  N  G  L  R  *  N  A  H  L  E  S  A  *  *  F  K  L  Y  I  S  Q  S   : G  I  S  T  R  A  E  L  *  E  I  *  E  *  *  *  C  *  F  C  N  H  Q   : G  G  W  S  Y  F  F  C  W  W  R  L  T  Y  V  L  *  W  T  K  H  K :   G  F  W  H  *  M  Y  L  *  N  V  L  A  L  L  P  H  S  Y  L  Q  E  T  A  Y  C  S  C  S  W  N  V  S  G  W  G  C  I  L  D  D  S  N  E  I  L  C  R  H  *  E  S   : V  *  F  Y  S  *  N  K  Y  R  V  P  S  R  L  W  L  L  L  Y  A  S  A  S  S  R  P  T  R :   G  I  R  G  L  N  R  R  K  T  K  G  *  R  S  G  C  C  W  T  S  H  S  F  C  S  F  T   : E  I  I  S  V  G  E  A  F  D  D  P  K  K  W  R  *  G  Y  N  *  I  S  H  Q  *  I  F </first_frame>
            <second_frame>  I  D  M  A  I  I  S  I  P  S  S  T  T  M  F  P  M  P  Q  Q  V  L  R  Q  N  K  E  :  V  V  M  A  E  E  M  G  C  A  R  M  L  T  L  N  R  P  D  N  L  N  Y  I  S  A  K  V  :  A  L  A  L  G  Q  N  F  E  K  Y  E  N  D  D  N  A  D  F  V  I  I  K  :  G  A  G  R  T  F  S  A  G  G  D  L  H  M  F  Y  D  G  R  N  T   : R  D  S  G  I  E  C  I  Y  R  M  Y  W  L  C  Y  H  I  H  T  Y  K  K  P  H  I  A  L  V  H  G  M  S  V  G  G  G  A  S  L  M  T  P  M  K  F  S  V  V  T  E  K  A  :  F  S  S  T  P  E  I  N  I  G  F  H  P  D  C  G  F  S  Y  M  L  P  R  L  P  G  R  L   : G  E  Y  V  G  L  T  G  E  K  L  R  G  K  E  V  V  A  A  G  L  A  T  H  F  V  P  S  Q  :  K  L  F  Q  L  E  K  R  L  M  T  L  K  N  G  D  E  D  T  I  R  S  V  I  N  E  F   </second_frame>
            <third_frame>   L  I  W  Q  *  Y  L  F  L  V  A  P  Q  C  F  Q  C  L  N  K  Y  *  D  K  I  K  R :   L  L  W  L  R  K  W  V  A  L  E  C  S  P  *  I  G  L  I  I  *  I  I  Y  Q  P  K  W :   H  *  H  S  G  R  T  L  R  N  M  R  M  M  I  M  L  I  L  *  S  S  R :   G  L  V  V  L  F  L  L  V  E  T  Y  I  C  S  M  M  D  E  T  Q  :  G  I  L  A  L  N  V  F  I  E  C  I  G  F  A  T  T  F  I  L  T  R  N  R  I  L  L  L  F  M  E  C  Q  W  V  G  V  H  P  *  *  L  Q  *  N  S  L  S  S  L  R  K  R :   L  V  L  L  L  K  *  I  *  G  S  I  Q  T  V  A  S  P  I  C  F  R  V  F  Q  A  D  *  :  G  N  T  W  A  *  Q  E  K  N  *  G  V  K  K  W  L  L  L  D  *  P  L  I  L  F  L  H  R :   N  Y  F  S  W  R  S  V  *  *  P  *  K  M  E  M  R  I  Q  L  D  Q  S  S  M  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0088K03.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87871" stop="87791"/>
                    <exon start="87683" stop="87600"/>
                    <exon start="87499" stop="87431"/>
                    <exon start="87128" stop="87065"/>
                    <exon start="86941" stop="86784"/>
                    <exon start="86674" stop="86590"/>
                    <exon start="86460" stop="86375"/>
                    <exon start="86162" stop="86082"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDMAIISIPSSTTMFPMPQQVLRQNKEVVMAEEMGCARMLTLNRPDNLNYISAKVALALGQNFEKYENDDNADFVIIKGAGRTFSAGGDLHMFYDGRNTRDSGIECIYRMYWLCYHIHTYKKPHIALVHGMSVGGGASLMTPMKFSVVTEKAFSSTPEINIGFHPDCGFSYMLPRLPGRLGEYVGLTGEKLRGKEVVAAGLATHFVPSQKLFQLEKRLMTLKNGDEDTIRSVINEF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 46 chains have been computed
$ 
$ memory statistics:
$ 17480 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 1942 bytes was the average size of a spliced alignment
$ 12272 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2045 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 50 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-02 14:40:19
-->
