<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-06 23:44:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0095F20-xKKHw/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLe0095F20-xKKHw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-xKKHw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1844" ref_strand="+" ref_description="SGN-M1844 T1220 [cos_markers]">
      <seq>agaatagattgaagcacgtactgagacataaaaggcgttttacaatgaggtgtaaggttccttcgctggtagatttatgtgttcagacagcagtagataatttgagataccttggggatgttggtgaaacagacacttatctactagagcgcattttgcctcactgttctcttgaacaattgacacatgtggagaattcgacagaaggaagagatctcagtcaagtgactgatagactttggaagaggttttaccagattgagtttggtgacaagagcatcaatcaggtggttgagcgaatgaagcaagtgaaagtaacatttaaatggaaacagttatatgaggcgaagacacaggaaatggaggaaactcaacaaagatcatttgaaagaatcaaggaattgtaccaaaacgaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-xKKHw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="17111" stop="18348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17411" g_stop="17616" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17617" i_stop="17695" i_length="79">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17696" g_stop="17833" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="344" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17834" i_stop="17971" i_length="138">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17972" g_stop="18048" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="421" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-M1844" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17411" e_stop="17616"/>
          <exon e_start="17696" e_stop="17833"/>
          <exon e_start="17972" e_stop="18048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAAGTAAGAAACTCTATGATTAGGTTATCCTCTTGCAGTGTTACATATCAAGTCCATTTGTAATGCTCAAATTCTTCTTCAGGGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCAAGTGAAAGTAACATTTAAATGGAAACAGTTATATGAGGTGATTTATCATATCATATTTTGTTTTTACTCCCTTATTATGATTTATGATATATGTTTAGTATTGAATCACATCTTCCTCTTATTGTTGTTACCAAATCATTCGACATTACAAAAGGGTATATCAATTTACTTGCAGGCGAAGACACAGGAAATGGAGGAAACTCAACAAAGATCATTTGAAAGAATCAAGGAATTGTACCAAAACGAAAATGC</genome_strand>
        <mrna_strand>AGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCAGACAGCAGTAGATAATTTGAGATACCTTGGGGATGTTGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAA...............................................................................GGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCAAGTGAAAGTAACATTTAAATGGAAACAGTTATATGAG..........................................................................................................................................GCGAAGACACAGGAAATGGAGGAAACTCAACAAAGATCATTTGAAAGAATCAAGGAATTGTACCAAAACGAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-xKKHw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7360" ref_strand="+" ref_description="SGN-M7360 C2_At2g30920 [cosii_markers]">
      <seq>gttttgaaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattttatctgagcctttggctcgaatgggagctacggtcacgggagttgatgctgtggacaaaaatattaagattgctcgccttcatgcggatttggatccacaaacttcttcaattgaatatcggtgcacaacagctgaaagcctggttgaagaacagagacaattcgatgctgtgattgcgctagaggtgattgagcatgtagcagatcctgctggattctgcaaatcattatcagcgttgaccattcctggtggtgctacagtgatatcaacgattaatcgttcaatgagagcatatgcaacggcaattgttgcagcagagtatctcctacattggcttccaaaaggtacacatcaatggtcaagctttctaaccccagaagaactagtcctcattcttcagcgcgcttctatatcggtgcaagagatggctggatttgtgtacaaccctttgacgggtcgctggtccttgtccgatgacatcagtgttaatttcatcgctttcggaacaaaatcagccaagaaggatgaaactctagattaagttacgatatagctgtcaattttattctgctgttaatctcttaacccattctgtatgtaatctctttttcagttttgttggatgatgaatgcaatttctatatgttagaatatgaacatccacatcacaagttcttaacttgaatgaaaatgtaccatttcgaaatttcaaatacatgtgtattatctttgattgataaaatttgtaacttcataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-xKKHw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35306" stop="28578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35006" g_stop="34753" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="344" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33766" g_stop="33688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="423" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33465" g_stop="33388" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="501" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33387" i_stop="31999" i_length="1389">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31998" g_stop="31950" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="550" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31949" i_stop="30796" i_length="1154">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30795" g_stop="30746" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="600" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30745" i_stop="30022" i_length="724">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30021" g_stop="29872" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="750" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29871" i_stop="29407" i_length="465">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29406" g_stop="29326" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="831" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29325" i_stop="29221" i_length="105">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29220" g_stop="28883" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="1169" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1170" polyA_stop="1194"/>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-M7360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1169</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35006" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
          <exon e_start="33766" e_stop="33688"/>
          <exon e_start="33465" e_stop="33388"/>
          <exon e_start="31998" e_stop="31950"/>
          <exon e_start="30795" e_stop="30746"/>
          <exon e_start="30021" e_stop="29872"/>
          <exon e_start="29406" e_stop="29326"/>
          <exon e_start="29220" e_stop="28883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCGGTATGTTTACTTGAATGTTTCCAGGATGCACCATTAAACTGCTGTTTTTTTTTTTGCTTGTCTGGTTAATGTACAGTTTAAGGATCTTCCCATACCTGAGATATCATGAGTATTGGCATCAAAATTTACTAGTCTTATATTGATTCGGAGTTTATTGGTTCCTCACCTTGAGGGACACATACAATTTTGCTTCGTCAAATTATAGTTCATTTGAAGGTCACAGTGCTTATGATGGAAGAAAAGTTAAAAATTTAGAAGGGTTTTGAACTGATAACTTGAATGTTCATTGCCTAATTATAGTTAGTCATACTGACAACAAGTGCAAGAAAAAATTCATACGATGTTTATTCATCTTGGTTCAAATCCTACTTAGAGGTCCACTAGAGATAAAAATATGTTGAAGAAACAAGATCTTTCTTTTGATTCCTTTTAGGCAATTTGAAAATTAAAGAAATGGTCAAAGCCTAGGCATCATCGGGTGGAGATGAATCAATAGATTGGGGTTCATTAGGACCAGTGTCTTGTGCTTCCAGGATAGAAATCCTGTTGTTAGTCTCACAGCCGATGTTGTACATTACTACACATTAGAAGGTCCATGGGTTGGCAAGTTACCTATTTAGTAAAGATAGAACTAGACGTTTTGTATAGATTCTGTTATATTTTAAAGAAAATGGCACAGCTCTTTTTGCCTCTTCCACTGTATGAGTTTTCCTTTTTGCACAAACTGGGAACAAGCCAGATAGTTCCTTTATGCTATTGTTTCCCTGCACTCATATATGCTGTGATGTTCTGGAGCTTCACCGACAAAATTTGCACCAAGGCGTTCCCATGGTTGATATACTAAAACCAAAAGGGTGTAAAGTTAAATCATGTTCAAAAGATCGCATTTAAGTTGCAAAAATACCTAATTTTAGTCCATGTGGCTGTGTTGTCTTGGTATTCAATATAATATGTGTAGGATATTAACTCCTGGTATATGTATTCAACCAATATTATTGACTTCCTTAATTTTTTTTATCCAAAAAAATATTTTCAGTATATCCTTATATATATAATATATGTGCTTGTCCTTCCAACAGCCTAAGCAAAACTCTTGAGCCTGTGTCAAAATTTTCAAGGACTATTGTGTCTTTATGCAACAACAGAAGTTCTAGAACCTACTAGAGCATATTCTCTAAAATAATGTTGTTGATGAAGTAGTTGAAGCAATTTCGTAGAACTAATATACTTTCATTATATACAATGGTAGGATTAGCACATATCTCAGCAATAGATTTGCTGTTTGTTAAGCTAGAGTGCTATTTTAAACAGATAGTTTTTGAATTGTGACAGTCAAACCCGTATACATTCTATATGGTGGATGCTTATGAATGCTGATATTTCTTTCAGGATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTGGTACATGCCATACTTGTTTGATGAGAATTTAGTCCAAATATTGGTGACTTCTATATGTGCATGTTAATCTTTCATCTCGATGTACAATGAACAGACATTATCTTTTCTTTTTTATCATGTTGGTGCCTTCTTTAGTAAAGAATAGGAAAACGAGTCTGCATAACATCGGTTTTTGTTATGAATCATGTTAATGATCAAGCACTGGTTTAATCATGCTCAACTTATCAAATAGAAATGAATTTTTGGCATCTTAGCAAAGCCTCACTTTCTTTCCAAAATAGTTGAAGTGACAGATGACCAACTTGTTGTATGTTATTGCAATCTCCATTTGCAATTTTTATTTGTTGTAGTTCCAATTTAAGCTGCAATAGTGTGAAATTACTGCCGTTTAGTTGCATGAACCATAACAGAGACTCCTAGGGTAATTCATGGTCAATTATTATCACTGGTTAACCTCCTCCTCCTTTATGGAGAGTATGGAAGGTGGGTAATTGGTCATGATTGCATACTAATTAGTTGCAGCTTCATGATAATTCAGCTTTGTAGTTGTTATAACCCCTAATTTCCGTTTTCACTCAACTGTGTGGTTGGTTATTTTCTCGCTGTGAAAACTTAGCTGAATTATCATGTGTTCAATGATTGGAACTGTTTTTGGACTTGCAAAAATATCAGTGTGTGAGATTCCTGGTGAAAAAAAAGATATGTGCTTTGATGATTTTGTGGTGAACTTAGTTGCTTCTGTGTCTGTGATTTAGATTCTTTAGACTCTTTTCTTTGTAGTTATGTCCTCTTTCCTGGAAAAAAAACATATCCATCTCATTTTATAGTAGAAAAAAGACCTTTTTCAAGACAACTTGTGCCTAATTAAGTTACATACCAGCTACTTAAAATGTTAAAGGAAATCATGAATCAAGCTCAAGTGTTTTAGTTATATGGAGATTAGTCTATGTCACAAGGACATGGAATTTTTAATGATTTTGTTCTTGTTTATGTTGTTACGTACTTTTCAGCTATGGTGTATAACAATTTTAGCTATTGACACATCTGTTGATTTGAAGAAAAACGAATTCTCTTGTTTTATTTAAAATCTCAATTTAGTTGAATATCAAAGATTGTTCTTCGAAGAATGACCCTATTGAATGTTATGTCGACAGAAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAGGTATGACTTAATAAGTGATAAGCTAACTTTGTTCAAAGATTTATTATCTTCAGTACAATCCATCTGTTTTAGTAGATTGTACTTATATCATTTGTACCTTTTGCTTTGCAAAACTTCCACTATTTATTTGAAGTTAACATAGTACATTGTATAAAAGGCTTGGTCCTTTAAGCAGTTCTATGCTTTTATAGCTTTGTTGCACTTGCTCAAGTCTAATAACTGGCACCCAGGGGTGTGGTCTAGAGGTCAATGGAGTGGGTGAAAACCTTGGAGAGTAGGAGTCAAATCCTAACAAATACCACAATGCTAGGTGATTTCTTTCTATTTGCTGAAGCCTTTGTGGGCAGAGTTACCTGATTCATGTGCTGGTGAAAGGTTGCAGGTACCCGTTGGAATAATCTAGGTCCTCTTGTAAAAGGTAGCAGGTATCTGTTAGAAAAGTCAAGGTCCGCGCAAGCTTACCTGACCATCTTTTAGAAAGTCTAGTAATTGGAGGCTTTTAGAGCTCTCACAGGTCTGTTACACAGGGACAGATACTGACACAGATGGAGGGATGTATGTGATATGATCTCTTCTAGTATGTGTATCTAAGGAATTCTGACTGGTGATGTAAAAATGTAACAACTGGGGCAATATCGAAGTATTCTAATCTCCCCTCTTAAGAGGACCCAACTTCCGATCTGATCTCTTCTAGTATGTGTATCTTATTCTGCCTCTTTTGTAGGTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGGGTAAATATATTTAGTGGATCTTCTAAATTGTATTGGTAATTTTTGGTTGATGCCTTGCAAAACTTAAATGATATTTGTGCATGTGAGATTTGCTAGTTCACTTTGAACAAATAGAGGAAGGTGTATGAAAGGTGTGTCTAGATAGTTCTATGTATTGTTATTCTCTCGCACAAATCGAACTTCCAATTTATGTTGGAGCATTTAATTTGATTCAAATTTGATTATGCTTCAAAGTATTCCAATTACGTTTTGAGGACTCATTTTGCTCTATTTGTTAGGATTCATCTCGATGATATATACTAGCATTATCTGTACATAATAGCAGCCATGTCAAAAGGCAATTTTCTACTAATTGTTGTGTTCTTGTCAGCCATGCTTCCTATGTCTCTGTGTGTGTGTTTCTTGCATTTCTTTTTGGAGGGTTGTACAATTGCAAATTGCTAATGTTATAACTGGACTTTACAGCTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTCTTCAGCGCGCTTCTATATCGGCAAGTGGATTAAACATGCTTCTCTGTTTTTCACCTGTATCTTAATCAAGTCAATATCTATCTGTTTGCGCCCATTTGAAACAGTAATCTTTCTGCATTTTACAGGTGCAAGAGATGGCTGGATTTGTGTACAACCCTTTGACGGGTCGCTGGTCCTTGTCCGATGACATCAGTGTTAATTTCATCGCTTTCGGAACAAAATCAGCCAAGAAGGATGAAACTCTAGATTAAGTTACGATATAGCTGTCAATTTTATTCTGCTGTTAATCTCTTAACCCATTCTGTATGTAATCTCTTTTTCAGTTTTGTTGGATGATGAATGCAATTTCTATATGTTAGAATATGAACATCCACATCACAAGTTCTTAACTTGAATGAAAATGTACCATTTCGAAATTTCAAATACATGTGTATTATCTTTGATTGATAAAATTTGTAACTTC</genome_strand>
        <mrna_strand>GTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG..............................................................................................................................................................................................................................CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTCTTCAGCGCGCTTCTATATCG.........................................................................................................GTGCAAGAGATGGCTGGATTTGTGTACAACCCTTTGACGGGTCGCTGGTCCTTGTCCGATGACATCAGTGTTAATTTCATCGCTTTCGGAACAAAATCAGCCAAGAAGGATGAAACTCTAGATTAAGTTACGATATAGCTGTCAATTTTATTCTGCTGTTAATCTCTTAACCCATTCTGTATGTAATCTCTTTTTCAGTTTTGTTGGATGATGAATGCAATTTCTATATGTTAGAATATGAACATCCACATCACAAGTTCTTAACTTGAATGAAAATGTACCATTTCGAAATTTCAAATACATGTGTATTATCTTTGATTGATAAAATTTGTAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-xKKHw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M4003-2" ref_strand="+" ref_description="SGN-M4003-2 C2_At2g42810-2 [cosii_markers]">
      <seq>ctttagcaaagtctcagtcttctttgacaaacccccaaagcgccataaaaagagtgttcatgaaaattccagtattgtgattccgcacgcaacacctacccagccagcctccagtcgccattgttatgcccggtatggaaactgagaactcaaacacctcccgagctgaagaactcaagcaactcgcaaatgaagcattcaaagggcataagtattcgcaagctattgatctgtacacacaagcaattgagttgaacggtgagaatgcggtgtactatgctaaccgtgcctttgctcacaccaaattggaggaatatggcagcgcaatacaggatggaactagagctattgaaattgaccctagatattcaaagggttattataggcgaggagctgcatatttggcaatggggaagttcaaagacgcactcaaggattttcaacaggtcaagaagttatgtccaaacgacccagatgctgccaaaaaattgaaggaatgtgagaaagctgtcatgaagctgaaatttgaagaagctatttctgtcccagaatctcagagacgttcagtagctgactctattgattatcattccgtagaggtagagcctcaatatgctggtgcaagaatagagggagatgtcgtaacattagattttgtgaagaagatgttggatgacttcaaaaaccagaagaatttacacaagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcattgccctcccttgttgacattgttgttcccgcagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctcctaaatattttcgagctcaatgggcttccatcagaagacaatccgtatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacattattcgccttcaagtgcatgtgtccatcagctatacaccttgcgagaggaaatcatgaaagcaagagcatgaacaaaatatatgggtttgagggcgaggtcagatccaagttaagtgaaatatttgtggaactctttgcagaagtgttctgttgcttacctttggcccatgtcataaatgagaaagtctttgtagtacatggaggtctttttagtgttgatggcgtgaagctctctgatattagagcaattgatcggttttgtgagcccccggaggaggggttaatgtgtgaattgttgtggagtgatccacaacctcagcctggtagaggacctagtaaacgaggtgttggtctttctttcgggggagacgtaactaaaagattcttgcaggaaaataatctagatttagtggtccgatctcatgaagtgaaggatgaaggttatgagattgaacatgatggcaaactcataacagtgttttccgctccaaattactgtgaccagatgggtaacaagggtgcttttatacggtttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcccgatgtcaagccaatggcatatgccaacaacttccttcggatgttttcttaaaactctgaaacctaacgttcagtattacaatcgattagaccttttgtcacactgaccaagagcatacacatcaggaggcagaagagctagtacttacacagccaattagctgcagtgtcattatttggacaacttcctgacttgcccgcagcttctgaggatcctcacctcctttgttttgattaaggtgtaaacacttgtctacaataacaatgtcgtgtggtggattgtcctctgtattgtttatgttcctatttgtaagattgtcacacttctcatttctcttagataatttccaaattgggaagctttgatacgtcgaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-xKKHw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="46858" stop="36461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46558" g_stop="46355" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46354" i_stop="46271" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46270" g_stop="46101" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="374" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46100" i_stop="46016" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46015" g_stop="45944" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="446" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45943" i_stop="45351" i_length="593">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45350" g_stop="45200" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="597" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45199" i_stop="42412" i_length="2788">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42411" g_stop="42303" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="706" r_length="109" r_score="0.945"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42302" i_stop="42222" i_length="81">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42221" g_stop="42104" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="824" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42103" i_stop="40488" i_length="1616">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40487" g_stop="40340" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="972" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40339" i_stop="39484" i_length="856">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39483" g_stop="39235" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="973" r_stop="1221" r_length="249" r_score="0.984"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="39234" i_stop="38722" i_length="513">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="38721" g_stop="38596" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1222" r_stop="1347" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="38595" i_stop="38464" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="38463" g_stop="38363" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1348" r_stop="1448" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="38362" i_stop="37362" i_length="1001">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="37361" g_stop="37287" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1449" r_stop="1523" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="37125" g_stop="36777" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1524" r_stop="1872" r_length="349" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1905" polyA_stop="1923"/>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-M4003-2" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>1872</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4003-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46558" e_stop="46355"/>
          <exon e_start="46270" e_stop="46101"/>
          <exon e_start="46015" e_stop="45944"/>
          <exon e_start="45350" e_stop="45200"/>
          <exon e_start="42411" e_stop="42303"/>
          <exon e_start="42221" e_stop="42104"/>
          <exon e_start="40487" e_stop="40340"/>
          <exon e_start="39483" e_stop="39235"/>
          <exon e_start="38721" e_stop="38596"/>
          <exon e_start="38463" e_stop="38363"/>
          <exon e_start="37361" e_stop="37287"/>
          <exon e_start="37125" e_stop="36777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGCAAAGTCTCAGTCTTCTTTGACAAACCCCCAAAGCGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAGGTAAATTCAATATACACAAACTTGAGGTTGTATCATGTGGATTTATGAATAATAAGTCTGTTTATGATTTCAATGTGTTTTCAGGGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAGGTAAGTATTTGAATTGTGAAAGAATTGGAATGGAATTGTGGTTTCTTTGTTTCTATTGATGTGTGATTAATTGCTGAGGTTGCAGGGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAGGTTGGTATTGTTTTTTGTAGCTTCTTCACTCATTTCAGCTGCAATTTTTTTATAAGCTTTATCTTAGGTACAACAGAAAATGTTGATGAAAAATCATTGCTTATGTAATTAGCTAACACATTTATTAGAGAAAATGATGACATACCGGTGACATTTCGTTGGGTTAATTAGCCACCTCATAGAAGATTCTTCTCTATGATTCACTTGAAAACATGTCCAAATGATACTTGAGATCTTAGCAGTAACTCGCCCATAAACAATTTAGTGGTTCAACAATGGAAGAGATATCAAGTAATCCTTTTGGACTGTTGTTTTCTTTTAAGAGAGGGCATCAATTTATTATTTTGTCTCAATACTGATTCTTGAAAGTTTTTTTCTTGGATTTTTTTGACAAACTATATGGTCTTGTTTCCCAAGTGGTTTTCTTTGGTGTCTCCTCTGCATTATAGGCTCTAAATATGCTGTTTGCATGTATCTTTTGAGTCTGCTTTATAGTTTTCTGCAGAAGATGTCCCCTATCTTCTCTAGTCAGTGTCTGGAATAGTTTACCAATCTGCTAATTCTGGGATGTGTTCCTTTATTGTCTCACTCAGGTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAGGTAAGATAGCTCCAAGCTGATATTTCTTCCTTATATTATGCTCACGGAAGGTACCTTGGTCATAGAGTAAATTTCTTTGCAAAGCATGGCTTTGCACTATGTTTTCTTGTCTCATCTATGCGTATAGTTGCTGGATAAATTTCTTGCATTACATGTCATGGCATTTCATAAGGTGCAGGACATGGTTACTACAATGGAAAAATGCTTCTTTCCCTTTCCTTTCTTAATTTACTGCTGCTTGTTGCCATACACGTTTGATTCGTTAATTGAGGGATGAGAATTTCTCAATATCCTTGAAATGTTGAATTTACTGCCATGAGATTTACTTATTTGTAGAGGTTTGCACCTCTTTTGTGAAGTTTGATGCATCAGTAGTTTAGGTCTCACTTCTCAGTCTGATAGGTACTGGTTAGATGGTTTTTGTTGAAAAGTTTGAGAATGTGCGGGGGCATCAGTTTCGCCTGGGATAGATGGTAGAAAATGTTGACTTGTCCATGTGGAACTTTTCTTTTCTCTTCCCAACCTCTTCAAATGCTCTGAAGTAACCATAACAAGATAAAGAATAAATCCCTTTGATCTTTTCGACATTATCGTTTGGTTGCGAAGATGATATGTTGTTTGTTTACTATGTGCAAGTAAATAAAACATTACAAGATGTTGTTCACGAACTACTTCCAATCACTTAGTTCAAATTTAGCCATTACTTACACTTCGTGTCCCTTTCAGGAAACGCTGTAAACCTCTAACTCAAATTTTGGCAATTACTATAGTAGATTTTTAGTTAAATGACCCCCTGAATTGAACATGGGTTTGTCCTTTAGATTATTCAACAATAAACCTTCATTTGAAATAACAAGACAAAATAAGAATCTCTAAGCTTAGTCAACTTTCAACCTTTCATGTTAGTCCATATAATTTTCATTCTTATAAAAGTAAATTTTAATAGTAAAATTTACCTATTTCATCCTTATAGGATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAGGTTTGAGCCTTTATAAGAAAAATGTTGAACTAGTAGACACTCAAGTTAGTGGTAGTTCGCGAAATGGACATCCATCATAATCGGAATAGTTGAATAAGGATTAGTTGTAACCTAGAGCAAATGCTCGTATTTTATTTACATTCCATTGCGTTGCATTTGATTGAAAATTGTTCCTGTTCAATTGATATGTCCTATGTATGAAATTACTAGGAGCATGGTGTTCCAACTAAAGCCATTTTCGACCCTCTATATAGTATATTCAGCATTCTTAGTAGTTATTTGCTTCTTTTGGCCTTCTCTGAGGACCATATGAGTATGGTGTGAACTCTTCAGAAAATAGATCTCTAAAATCAGTCACAGGTTTAAGTGTTTTGCCTAGAGTACCACGTCATCCTTTGCTTTCTAACCATTAAAGTTTCTAATAAGTTAGTACTTATATTACTCAGAGCGACTTATAGATTCTTGCCCCATTATTTACGTGATACATCTCAATTCTTGGCACATCTGCTATTGTATTTTATGGGGAAGATTCTCTTTGGTAAGTAAGACAGTAGCGTTTTGCTCTGTGGGTCTCCTTTTAAACTTCAGGCTTAGAGTTCTTAGCTGCCCCTTGCTGAAGACATTCATCCCTTGCCTTATGCTTTTCGGGGTTGTTTGGTTTAGAGACAAAATTTTCAGGGGTTAGTAATGTAAGGATTAAGTAACAAAGAGATTAATAATCCAAGAATTTTTTCTTCTTGTATGTTTAGTTTGATATTTTTCCAAATAGTGTAAAATGTATATCATGAAATATGTTTTTACTTCTTAAAACCAAAAAAAAAAATAGCTTATTTGTTATTATGATGTCGTTTTAATGTTTTTAGTCCATGGATTACTAATCCCCACATTCTTATTCCACATCATATCTGGTATAAAATAATTCATAGATTCCCGCATAACTTGTGTCTTATGCAAATATTATTTATGAGAAAAACATAAGTAGCAAAAAAGTTTATGCCAAAAACATAAGTAGCAACCAAGCATTGTCTAAATTAATGCTGGATTTTATGCAAAGGTTAAATTTCTTGACAGTAATTAGGGATTCAATCAGTTTCAAAAAAATTAGGGATTCAATCAGGATCTTATTCTGTAATTATACACTTACCAAAATCATTTACGTTGTAATTGCTATAAATTCCCATTTCAAACTATCCCTTGCTGTGTTAGCTTTATGTATGCACTATGCAGTAATTGCTAGTTTGCTGGTTCTATTTTGCCTTTCTTACCTTTAAATTTGGAGACTCTTTTAGGATGATTGGGCATGTGGCTGTCTGCATGTCTTGATCCTTGTCATTCTGACTCTTCCTTGCTTTTATGTGTCAGTACTGTTTTACATATCATATTGAGAAATCTGAGAGTTTGCGTGACATTTTTTTTGTACCCCATGATTTGTGTCTCTAACATAGTAAGACCACCTCTTGGTGTCAAGACTGTGCTGGGGAACTTGCATTCAGTGGTTTAATCTTTATTAATACTCTCTACTTCATCTAATCCAGTTAATGAGAAATCTGCTCGCTTTGTTTCACCTGAATTTACATGCCAGTTTGGTTCTTTAAATTGTAGAGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGGGTAAGTTCTGATGCAAGTAGAGAATTGTACATGTATGATGTCCTTTCAATATGCTATATCTATACTAATTATTCTGCTTTAAGCTTCTTAATGCTCCATTAATCGTCTGATAAACTCTTCAAACAAAGCTCGGAAAAACTATTCATGCAAGTTTGTGTATCAGAACTACCATTCTCATTTGCTCGGTAGTTATCATCATTACACATTATTTCTGCAAGCCACTTTCTTGATACATGCTAATAAATACTTTTGAGTCCAGACACGACTATTATTTTGAAATAAAGGCAACTATTCTGGTCTTTATCGATGCTTTTGTTGGCCAAACAAATTGAAACTTTCTGCATTTCTGCTTGATCTCAGTTAGTATTAATGTATTGACTTACTTCTTTGATAAGTCATCATCAGTTTTCTGACTTATTAAATATATGTTGCTTATTTCTTTTTTACCTTGGTCGTACATAATAAACATCACCAAGTTGTTTAGGACCTTAGGTTTCATTTGATCTCTTTCAGGGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAGGTACTAATCTTTTTCTTTCTCCCTTATTCTGTTGTTTGACCATGTAGAGAATTGACATTTCACTGTCTATTTTTATTCACTTAATGGATTTTAGCACAAATATTTGATGTTGACATGTGTGGGTGCTTGCAGATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAGGTAATTTGTCTCTATGTATTCCCCTCTCAAGAGTTTATTTGAGCTCATCCTACTTTAGTTCAATTAAAATCTCAATTTGCAAGTCAAAAGAACACCTTTGCCTCAAAAGTCCCTCTAGGTTGAAATGTAGCTCTTCATCAAAATCACTGCAGAGTTTTCGGTGTGTATAGATCTTGTATATCTGTGATTTGTCGGCACTGTTGTTAAAGGCGTGCTGAAGCGAGGCTCAATACTTGTTGAGCGATTCGCCTCGCCTCGCCTCAATGTCGTCATCAAGGTTCTACGACATGCTTTTCCTTGCGAATGAGCCTCTTCCGAAGAGGCGAGACAGTTGGCATTTCACTTTATCGTAATCTTTTTGTTCATATATTTGTCATTCATGCTATAACTATTAGTCTTGGACTATATATATATATATATATATTGTTTCTCCCTTTGTGCTTTTTCTTCATTAAAGTTTATGCTTTATTTGAGCTTGAAGTCCCAACGGATCTTAGAGGTTTTTTGCTTTTAATGACACTGTTTATCGGTCAAGTTTAGTATTGACACAACTTGTAGTCCGTTGCTTCATTTAGTATTTTAAAATGATGGGAAATAATGACTTTCTGCTTCAAGGTAGATTTGGAATTTGTTAGATGTTGACTTTGTCAGTAACTTCGATAGATGGTGTTGTGGACATATTTGCACAGATGGCGTGGTGTCCAGTTTCATTGCAAGTCTTGTTTCTTAGCATCTAATATATTTTCAAGTACATAAACTGATTGCAATATGTACAGATATAGTCATAATATTTGCTACTTTTTTGTGACAATTTACGTGGACAAGTCAGTTTTATAGTAACTGGAACTGTGTTATCTATACATTTGTATTCCTGTAGTAGAGAAGGATCTTGTAATAATTTCTTTGTATGACTAATACACTGTTATATCCTATATGAAGTTTCTTTGATGTGAATGGAAATGTTTTATTCAATATCCTCAAATGCACTTCGCTGGTTGCAGATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTT--ACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGA</genome_strand>
        <mrna_strand>CTTTAGCAAAGTCTCAGTCTTCTTTGACAAACCCCCAAAGCGCCATAAAAAGAGTGTTCATGAAAATTCCAGTATTGTGATTCCGCACGCAACACCTACCCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAACTGAGAACTCAAACACCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG....................................................................................GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCAATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCCTTTGCTCACACCAAATTGGAGGAATATGGCAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG.....................................................................................GGTTATTATAGGCGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGACGCACTCAAGGATTTTCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAGTTATGTCCAAACGACCCAGATGCTGCCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTGAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGACGTTCAGTAGCTGACTCTATTGATTATCATTCCGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTAGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTCGTAACATTAGATTTTGTGAAGAAGATGTTGGATGACTTCAAAAACCAGAAGAATTTACACAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCATTGCCCTCCCTTGTTGACATTGTTGTTCCCGCAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTCGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTTGCGAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCGGAGGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAG....................................................................................................................................ATTTAGTGGTCCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAACATGATGGCAAACTCATAACAGTGTTTTCCGCTCCAAATTACTGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTAACAAGGGTGCTTTTATACGGTTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCCGATGTCAAGCCAATGGCATATGCCAACAACTTCCTTCGGATGTTTTCTT-AAAACTCTGAAACCTAACGTTCAGTATTACAATCGATTAGACCTTTTGTCACACTGACCAAGAGCATACACATCAGGAGGCAGAAGAGCTAGTACTTACACAGCCAATTAGCTGCAGTGTCATTATTTGGACAACTTCCTGACTTGCCCGCAGCTTCTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGTGTAAACAC-TTGTCTACAATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTGTTTATGTTCCTATTTGTAAGATTGTCACACTTCTCATTTCTCTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-xKKHw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M4003" ref_strand="+" ref_description="SGN-M4003 C2_At2g42810 [cosii_markers]">
      <seq>cgccataaaaagagtattcatgaaaattccagtattgtgacttcgcacgcaacatctactcagccagcctccagtcgccattgttatgcccggtatggaagctgagaactcaaacgcctcccgagctgaagaactcaagcaactcgcaaatgaagcattcaaagggcataagtattcgcaagctattgatctgtacacacaagcgattgagttgaacggtgagaatgcggtgtactatgctaaccgtgcgtttgctcactccaaattggaggaatatggaagcgcaatacaggatggaactagagctattgaaattgaccctagatattcaaagggttattataggagaggagctgcatatttggcaatggggaagttcaaagatgcactcaaggattttcaacaggtcaagaaattatgtccaaacgacccagatgctaccaaaaaattgaaggaatgtgagaaagctgtcatgaagctaaaatttgaagaagctatttctgtcccagaatctcagaggcgttcagtagctgactctattgattatcgttctgtagaggtggagcctcaatatgctggtgcaagaatagagggagatgttgtaacattagattttgtgaagaagatgctggatgacttcaaaaaccagaagaacttgcataagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcactgccctcccttgttgacattgttgttcccgaagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctcctaaatattttcgagctcaatgggcttccatcagaagacaatccgtatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacattatttgccttcaagtgcatgtgtccatcagctatacacctggcgagaggaaatcacgaaagcaagagcatgaacaaaatatatgggtttgagggcgaggtcagatccaagttaagtgaaatatttgtggaactctttgcagaagtgttctgttgcttacctttggcccatgtcataaatgagaaagtctttgtagtacatggaggtctttttagtgttgatggcgtgaagctctctgatattagagcaattgatcggttttgtgagcccccagaagaggggttaatgtgtgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-xKKHw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="46818" stop="38929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46518" g_stop="46355" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46354" i_stop="46271" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46270" g_stop="46101" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="334" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46100" i_stop="46016" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46015" g_stop="45944" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="406" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45943" i_stop="45351" i_length="593">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45350" g_stop="45200" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="557" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45199" i_stop="42412" i_length="2788">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42411" g_stop="42303" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="666" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42302" i_stop="42222" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42221" g_stop="42104" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="784" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42103" i_stop="40488" i_length="1616">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40487" g_stop="40340" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="932" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40339" i_stop="39484" i_length="856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39483" g_stop="39235" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="933" r_stop="1181" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-M4003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1181</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46518" e_stop="46355"/>
          <exon e_start="46270" e_stop="46101"/>
          <exon e_start="46015" e_stop="45944"/>
          <exon e_start="45350" e_stop="45200"/>
          <exon e_start="42411" e_stop="42303"/>
          <exon e_start="42221" e_stop="42104"/>
          <exon e_start="40487" e_stop="40340"/>
          <exon e_start="39483" e_stop="39235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAGGTAAATTCAATATACACAAACTTGAGGTTGTATCATGTGGATTTATGAATAATAAGTCTGTTTATGATTTCAATGTGTTTTCAGGGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAGGTAAGTATTTGAATTGTGAAAGAATTGGAATGGAATTGTGGTTTCTTTGTTTCTATTGATGTGTGATTAATTGCTGAGGTTGCAGGGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAGGTTGGTATTGTTTTTTGTAGCTTCTTCACTCATTTCAGCTGCAATTTTTTTATAAGCTTTATCTTAGGTACAACAGAAAATGTTGATGAAAAATCATTGCTTATGTAATTAGCTAACACATTTATTAGAGAAAATGATGACATACCGGTGACATTTCGTTGGGTTAATTAGCCACCTCATAGAAGATTCTTCTCTATGATTCACTTGAAAACATGTCCAAATGATACTTGAGATCTTAGCAGTAACTCGCCCATAAACAATTTAGTGGTTCAACAATGGAAGAGATATCAAGTAATCCTTTTGGACTGTTGTTTTCTTTTAAGAGAGGGCATCAATTTATTATTTTGTCTCAATACTGATTCTTGAAAGTTTTTTTCTTGGATTTTTTTGACAAACTATATGGTCTTGTTTCCCAAGTGGTTTTCTTTGGTGTCTCCTCTGCATTATAGGCTCTAAATATGCTGTTTGCATGTATCTTTTGAGTCTGCTTTATAGTTTTCTGCAGAAGATGTCCCCTATCTTCTCTAGTCAGTGTCTGGAATAGTTTACCAATCTGCTAATTCTGGGATGTGTTCCTTTATTGTCTCACTCAGGTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAGGTAAGATAGCTCCAAGCTGATATTTCTTCCTTATATTATGCTCACGGAAGGTACCTTGGTCATAGAGTAAATTTCTTTGCAAAGCATGGCTTTGCACTATGTTTTCTTGTCTCATCTATGCGTATAGTTGCTGGATAAATTTCTTGCATTACATGTCATGGCATTTCATAAGGTGCAGGACATGGTTACTACAATGGAAAAATGCTTCTTTCCCTTTCCTTTCTTAATTTACTGCTGCTTGTTGCCATACACGTTTGATTCGTTAATTGAGGGATGAGAATTTCTCAATATCCTTGAAATGTTGAATTTACTGCCATGAGATTTACTTATTTGTAGAGGTTTGCACCTCTTTTGTGAAGTTTGATGCATCAGTAGTTTAGGTCTCACTTCTCAGTCTGATAGGTACTGGTTAGATGGTTTTTGTTGAAAAGTTTGAGAATGTGCGGGGGCATCAGTTTCGCCTGGGATAGATGGTAGAAAATGTTGACTTGTCCATGTGGAACTTTTCTTTTCTCTTCCCAACCTCTTCAAATGCTCTGAAGTAACCATAACAAGATAAAGAATAAATCCCTTTGATCTTTTCGACATTATCGTTTGGTTGCGAAGATGATATGTTGTTTGTTTACTATGTGCAAGTAAATAAAACATTACAAGATGTTGTTCACGAACTACTTCCAATCACTTAGTTCAAATTTAGCCATTACTTACACTTCGTGTCCCTTTCAGGAAACGCTGTAAACCTCTAACTCAAATTTTGGCAATTACTATAGTAGATTTTTAGTTAAATGACCCCCTGAATTGAACATGGGTTTGTCCTTTAGATTATTCAACAATAAACCTTCATTTGAAATAACAAGACAAAATAAGAATCTCTAAGCTTAGTCAACTTTCAACCTTTCATGTTAGTCCATATAATTTTCATTCTTATAAAAGTAAATTTTAATAGTAAAATTTACCTATTTCATCCTTATAGGATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAGGTTTGAGCCTTTATAAGAAAAATGTTGAACTAGTAGACACTCAAGTTAGTGGTAGTTCGCGAAATGGACATCCATCATAATCGGAATAGTTGAATAAGGATTAGTTGTAACCTAGAGCAAATGCTCGTATTTTATTTACATTCCATTGCGTTGCATTTGATTGAAAATTGTTCCTGTTCAATTGATATGTCCTATGTATGAAATTACTAGGAGCATGGTGTTCCAACTAAAGCCATTTTCGACCCTCTATATAGTATATTCAGCATTCTTAGTAGTTATTTGCTTCTTTTGGCCTTCTCTGAGGACCATATGAGTATGGTGTGAACTCTTCAGAAAATAGATCTCTAAAATCAGTCACAGGTTTAAGTGTTTTGCCTAGAGTACCACGTCATCCTTTGCTTTCTAACCATTAAAGTTTCTAATAAGTTAGTACTTATATTACTCAGAGCGACTTATAGATTCTTGCCCCATTATTTACGTGATACATCTCAATTCTTGGCACATCTGCTATTGTATTTTATGGGGAAGATTCTCTTTGGTAAGTAAGACAGTAGCGTTTTGCTCTGTGGGTCTCCTTTTAAACTTCAGGCTTAGAGTTCTTAGCTGCCCCTTGCTGAAGACATTCATCCCTTGCCTTATGCTTTTCGGGGTTGTTTGGTTTAGAGACAAAATTTTCAGGGGTTAGTAATGTAAGGATTAAGTAACAAAGAGATTAATAATCCAAGAATTTTTTCTTCTTGTATGTTTAGTTTGATATTTTTCCAAATAGTGTAAAATGTATATCATGAAATATGTTTTTACTTCTTAAAACCAAAAAAAAAAATAGCTTATTTGTTATTATGATGTCGTTTTAATGTTTTTAGTCCATGGATTACTAATCCCCACATTCTTATTCCACATCATATCTGGTATAAAATAATTCATAGATTCCCGCATAACTTGTGTCTTATGCAAATATTATTTATGAGAAAAACATAAGTAGCAAAAAAGTTTATGCCAAAAACATAAGTAGCAACCAAGCATTGTCTAAATTAATGCTGGATTTTATGCAAAGGTTAAATTTCTTGACAGTAATTAGGGATTCAATCAGTTTCAAAAAAATTAGGGATTCAATCAGGATCTTATTCTGTAATTATACACTTACCAAAATCATTTACGTTGTAATTGCTATAAATTCCCATTTCAAACTATCCCTTGCTGTGTTAGCTTTATGTATGCACTATGCAGTAATTGCTAGTTTGCTGGTTCTATTTTGCCTTTCTTACCTTTAAATTTGGAGACTCTTTTAGGATGATTGGGCATGTGGCTGTCTGCATGTCTTGATCCTTGTCATTCTGACTCTTCCTTGCTTTTATGTGTCAGTACTGTTTTACATATCATATTGAGAAATCTGAGAGTTTGCGTGACATTTTTTTTGTACCCCATGATTTGTGTCTCTAACATAGTAAGACCACCTCTTGGTGTCAAGACTGTGCTGGGGAACTTGCATTCAGTGGTTTAATCTTTATTAATACTCTCTACTTCATCTAATCCAGTTAATGAGAAATCTGCTCGCTTTGTTTCACCTGAATTTACATGCCAGTTTGGTTCTTTAAATTGTAGAGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG</genome_strand>
        <mrna_strand>CGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG....................................................................................GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG.....................................................................................GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-xKKHw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1715" ref_strand="+" ref_description="SGN-M1715 T1030 [cos_markers]">
      <seq>tgacttcaaaaaccagaagaacttgcataagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcactgccctcccttgttgacattgttgttcccgaagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctcctaaatattttcgagctcaatgggcttccatcagaagacaatccgtatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacattatttgccttcaagtgcatgtgtccatcagctatacacctggcgagaggaaatcacgaaagcaagagcatgaacaaaatatatgggtttgagggcgaggtcagatccaagttaagtgaaatatttgtggaactctttgcagaagtgttctgttgcttacctttggcccatgtcataaatgagaaagtctttgtagtacatggaggtctttttagtgttgatggcgtgaagctctctgatattagagcaattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-xKKHw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="42635" stop="38959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42335" g_stop="42303" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42302" i_stop="42222" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42221" g_stop="42104" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="151" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42103" i_stop="40488" i_length="1616">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40487" g_stop="40340" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="299" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40339" i_stop="39484" i_length="856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39483" g_stop="39259" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="524" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-M1715" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42335" e_stop="42303"/>
          <exon e_start="42221" e_stop="42104"/>
          <exon e_start="40487" e_stop="40340"/>
          <exon e_start="39483" e_stop="39259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATC</genome_strand>
        <mrna_strand>TGACTTCAAAAACCAGAAGAACTTGCATAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="17411" PGL_stop="18048"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17411" e_stop="17616"/>
            <exon e_start="17696" e_stop="17833"/>
            <exon e_start="17972" e_stop="18048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.907" acc_prob="0.958" e_score="0.985"/>
          <exon-intron don_prob="0.951" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="17411" e_stop="17616" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.907" acc_prob="0.958">
            <gDNA_intron_boundary i_start="17617" i_stop="17695" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17696" e_stop="17833" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.959">
            <gDNA_intron_boundary i_start="17834" i_stop="17971" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17972" e_stop="18048" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17411" stop="17616"/>
              <exon start="17696" stop="17833"/>
              <exon start="17972" stop="18048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAA : GGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCAAGTGAAAGTAACATTTAAATGGAAACAGTTATATGAG : GCGAAGACACAGGAAATGGAGGAAACTCAACAAAGATCATTTGAAAGAATCAAGGAATTGTACCAAAACGAAAATGC</gDNA_template>
            <first_frame> R  I  D  *  S  T  Y  *  D  I  K  G  V  L  Q  *  G  V  R  F  L  R  W  *  I  Y  V  F  G  Q  Q  *  I  I  *  G  T  L  G  M  W  V  K  Q  T  L  I  Y  *  S  A  F  C  L  T  V  L  L  N  N  *  H  M  W  R  I  R  Q  K :   E  E  I  S  V  K  *  L  I  D  F  G  R  G  F  T  R  L  S  L  V  T  R  A  S  I  R  W  L  S  E  *  S  K  *  K  *  H  L  N  G  N  S  Y  M  R :   R  R  H  R  K  W  R  K  L  N  K  D  H  L  K  E  S  R  N  C  T  K  T  K  M  </first_frame>
            <second_frame>  E  *  I  E  A  R  T  E  T  *  K  A  F  Y  N  E  V  *  G  S  F  A  G  R  F  M  C  S  D  S  S  R  *  F  E  V  P  W  G  C  G  *  N  R  H  L  S  T  R  A  H  F  A  S  L  F  S  *  T  I  D  T  C  G  E  F  D  R   : R  K  R  S  Q  S  S  D  *  *  T  L  E  E  V  L  P  D  *  V  W  *  Q  E  H  Q  S  G  G  *  A  N  E  A  S  E  S  N  I  *  M  E  T  V  I  *   : G  E  D  T  G  N  G  G  N  S  T  K  I  I  *  K  N  Q  G  I  V  P  K  R  K  C </second_frame>
            <third_frame>   N  R  L  K  H  V  L  R  H  K  R  R  F  T  M  R  C  K  V  P  S  L  V  D  L  C  V  R  T  A  V  D  N  L  R  Y  L  G  D  V  G  E  T  D  T  Y  L  L  E  R  I  L  P  H  C  S  L  E  Q  L  T  H  V  E  N  S  T  E  :  G  R  D  L  S  Q  V  T  D  R  L  W  K  R  F  Y  Q  I  E  F  G  D  K  S  I  N  Q  V  V  E  R  M  K  Q  V  K  V  T  F  K  W  K  Q  L  Y  E  :  A  K  T  Q  E  M  E  E  T  Q  Q  R  S  F  E  R  I  K  E  L  Y  Q  N  E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17413" stop="17616"/>
                    <exon start="17696" stop="17833"/>
                    <exon start="17972" stop="18046"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRLKHVLRHKRRFTMRCKVPSLVDLCVRTAVDNLRYLGDVGETDTYLLERILPHCSLEQLTHVENSTEGRDLSQVTDRLWKRFYQIEFGDKSINQVVERMKQVKVTFKWKQLYEAKTQEMEETQQRSFERIKELYQNEN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="35006" PGL_stop="28883"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35006" e_stop="34753"/>
            <exon e_start="34357" e_stop="34268"/>
            <exon e_start="33766" e_stop="33688"/>
            <exon e_start="33465" e_stop="33388"/>
            <exon e_start="31998" e_stop="31950"/>
            <exon e_start="30795" e_stop="30746"/>
            <exon e_start="30021" e_stop="29872"/>
            <exon e_start="29406" e_stop="29326"/>
            <exon e_start="29220" e_stop="28883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.373" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.852" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35006" e_stop="34753" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34357" e_stop="34268" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.373" acc_prob="0.965">
            <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33766" e_stop="33688" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.984">
            <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33465" e_stop="33388" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="33387" i_stop="31999" i_length="1389"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31998" e_stop="31950" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.852" acc_prob="0.751">
            <gDNA_intron_boundary i_start="31949" i_stop="30796" i_length="1154"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30795" e_stop="30746" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30745" i_stop="30022" i_length="724"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30021" e_stop="29872" e_length="150"/>
          </exon>
          <intron i_serial="7" don_prob="0.936" acc_prob="0.920">
            <gDNA_intron_boundary i_start="29871" i_stop="29407" i_length="465"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29406" e_stop="29326" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.922" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29325" i_stop="29221" i_length="105"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29220" e_stop="28883" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35006" stop="34753"/>
              <exon start="34357" stop="34268"/>
              <exon start="33766" stop="33688"/>
              <exon start="33465" stop="33388"/>
              <exon start="31998" stop="31950"/>
              <exon start="30795" stop="30746"/>
              <exon start="30021" stop="29872"/>
              <exon start="29406" stop="29326"/>
              <exon start="29220" stop="28883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7360" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG : GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG : AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG : CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG : GATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTG : AAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAG : GTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGG : CTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTCTTCAGCGCGCTTCTATATCG : GTGCAAGAGATGGCTGGATTTGTGTACAACCCTTTGACGGGTCGCTGGTCCTTGTCCGATGACATCAGTGTTAATTTCATCGCTTTCGGAACAAAATCAGCCAAGAAGGATGAAACTCTAGATTAAGTTACGATATAGCTGTCAATTTTATTCTGCTGTTAATCTCTTAACCCATTCTGTATGTAATCTCTTTTTCAGTTTTGTTGGATGATGAATGCAATTTCTATATGTTAGAATATGAACATCCACATCACAAGTTCTTAACTTGAATGAAAATGTACCATTTCGAAATTTCAAATACATGTGTATTATCTTTGATTGATAAAATTTGTAACTTC</gDNA_template>
            <first_frame> V  L  N  R  L  R  S  L  C  R  V  S  Q  L  S  D  V  R  F  D  K  L  R  D  P  V  S  I  F  S  T  S  Q  N  Q  V  T  W  R  S  Y  S  E  A  S  Q  P  T  P  I  N  P  P  P  P  P  P  P  S  P  N  T  S  T  T  T  S  S  S  L  N  E  F  E  L  A  K  F  S  A  I  A  E  T  W :   W  D  A  E  G  P  F  K  P  L  H  L  M  N  P  T  R  L  A  F  I  R  S  T  L  C  R  H  F  R :   K  D  P  N  C  T  R  P  F  E  G  L  K  F  V  D  V  G  C  G  G  G  I  L  S  E  :  P  L  A  R  M  G  A  T  V  T  G  V  D  A  V  D  K  N  I  K  I  A  R  L  H  A  :  D  L  D  P  Q  T  S  S  I  E  Y  R  C  T  T  A   : E  S  L  V  E  E  Q  R  Q  F  D  A  V  I  A  L  E  :  V  I  E  H  V  A  D  P  A  G  F  C  K  S  L  S  A  L  T  I  P  G  G  A  T  V  I  S  T  I  N  R  S  M  R  A  Y  A  T  A  I  V  A  A  E  Y  L  L  H  W  :  L  P  K  G  T  H  Q  W  S  S  F  L  T  P  E  E  L  V  L  I  L  Q  R  A  S  I  S  :  V  Q  E  M  A  G  F  V  Y  N  P  L  T  G  R  W  S  L  S  D  D  I  S  V  N  F  I  A  F  G  T  K  S  A  K  K  D  E  T  L  D  *  V  T  I  *  L  S  I  L  F  C  C  *  S  L  N  P  F  C  M  *  S  L  F  Q  F  C  W  M  M  N  A  I  S  I  C  *  N  M  N  I  H  I  T  S  S  *  L  E  *  K  C  T  I  S  K  F  Q  I  H  V  Y  Y  L  *  L  I  K  F  V  T   </first_frame>
            <second_frame>  F  *  T  D  *  D  L  S  V  E  S  L  N  S  A  T  S  V  L  I  N  S  E  T  R  F  P  F  S  P  P  H  K  I  R  *  H  G  D  L  I  P  K  L  L  S  Q  L  R  *  I  L  H  H  H  L  L  H  P  L  I  L  L  Q  Q  L  Q  V  L  S  M  N  L  N  L  P  N  S  L  P  L  P  K  P   : G  G  M  Q  K  D  P  L  S  H  Y  I  *  *  T  L  Q  D  L  L  L  L  G  P  L  F  V  G  T  S   : E  R  I  Q  I  A  L  D  L  L  K  D  *  S  L  L  M  L  V  V  E  A  E  F  Y  L  S :   L  W  L  E  W  E  L  R  S  R  E  L  M  L  W  T  K  I  L  R  L  L  A  F  M  R :   I  W  I  H  K  L  L  Q  L  N  I  G  A  Q  Q  L  :  K  A  W  L  K  N  R  D  N  S  M  L  *  L  R  *  R :   *  L  S  M  *  Q  I  L  L  D  S  A  N  H  Y  Q  R  *  P  F  L  V  V  L  Q  *  Y  Q  R  L  I  V  Q  *  E  H  M  Q  R  Q  L  L  Q  Q  S  I  S  Y  I  G :   F  Q  K  V  H  I  N  G  Q  A  F  *  P  Q  K  N  *  S  S  F  F  S  A  L  L  Y  R :   C  K  R  W  L  D  L  C  T  T  L  *  R  V  A  G  P  C  P  M  T  S  V  L  I  S  S  L  S  E  Q  N  Q  P  R  R  M  K  L  *  I  K  L  R  Y  S  C  Q  F  Y  S  A  V  N  L  L  T  H  S  V  C  N  L  F  F  S  F  V  G  *  *  M  Q  F  L  Y  V  R  I  *  T  S  T  S  Q  V  L  N  L  N  E  N  V  P  F  R  N  F  K  Y  M  C  I  I  F  D  *  *  N  L  *  L  </second_frame>
            <third_frame>   F  E  P  T  E  I  S  L  *  S  L  S  T  Q  R  R  P  F  *  *  T  Q  R  P  G  F  H  F  L  H  L  T  K  S  G  N  M  A  I  L  F  R  S  F  S  A  N  S  D  K  S  S  T  T  T  S  S  I  P  *  Y  F  Y  N  N  F  K  F  S  Q  *  I  *  T  C  Q  I  L  C  H  C  R  N  L  :  V  G  C  R  R  T  L  *  A  I  T  S  D  E  P  Y  K  T  C  F  Y  *  V  H  S  L  S  A  L  Q  :  K  G  S  K  L  H  *  T  F  *  R  T  E  V  C  *  C  W  L  W  R  R  N  F  I  *   : A  F  G  S  N  G  S  Y  G  H  G  S  *  C  C  G  Q  K  Y  *  D  C  S  P  S  C   : G  F  G  S  T  N  F  F  N  *  I  S  V  H  N  S  * :   K  P  G  *  R  T  E  T  I  R  C  C  D  C  A  R   : G  D  *  A  C  S  R  S  C  W  I  L  Q  I  I  I  S  V  D  H  S  W  W  C  Y  S  D  I  N  D  *  S  F  N  E  S  I  C  N  G  N  C  C  S  R  V  S  P  T  L   : A  S  K  R  Y  T  S  M  V  K  L  S  N  P  R  R  T  S  P  H  S  S  A  R  F  Y  I   : G  A  R  D  G  W  I  C  V  Q  P  F  D  G  S  L  V  L  V  R  *  H  Q  C  *  F  H  R  F  R  N  K  I  S  Q  E  G  *  N  S  R  L  S  Y  D  I  A  V  N  F  I  L  L  L  I  S  *  P  I  L  Y  V  I  S  F  S  V  L  L  D  D  E  C  N  F  Y  M  L  E  Y  E  H  P  H  H  K  F  L  T  *  M  K  M  Y  H  F  E  I  S  N  T  C  V  L  S  L  I  D  K  I  C  N  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35006" stop="34753"/>
                    <exon start="34357" stop="34268"/>
                    <exon start="33766" stop="33688"/>
                    <exon start="33465" stop="33388"/>
                    <exon start="31998" stop="31950"/>
                    <exon start="30795" stop="30746"/>
                    <exon start="30021" stop="29872"/>
                    <exon start="29406" stop="29326"/>
                    <exon start="29220" stop="29095"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLNRLRSLCRVSQLSDVRFDKLRDPVSIFSTSQNQVTWRSYSEASQPTPINPPPPPPPSPNTSTTTSSSLNEFELAKFSAIAETWWDAEGPFKPLHLMNPTRLAFIRSTLCRHFRKDPNCTRPFEGLKFVDVGCGGGILSEPLARMGATVTGVDAVDKNIKIARLHADLDPQTSSIEYRCTTAESLVEEQRQFDAVIALEVIEHVADPAGFCKSLSALTIPGGATVISTINRSMRAYATAIVAAEYLLHWLPKGTHQWSSFLTPEELVLILQRASISVQEMAGFVYNPLTGRWSLSDDISVNFIAFGTKSAKKDETLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="46558" PGL_stop="36777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46558" e_stop="46355"/>
            <exon e_start="46270" e_stop="46101"/>
            <exon e_start="46015" e_stop="45944"/>
            <exon e_start="45350" e_stop="45200"/>
            <exon e_start="42411" e_stop="42303"/>
            <exon e_start="42221" e_stop="42104"/>
            <exon e_start="40487" e_stop="40340"/>
            <exon e_start="39483" e_stop="39235"/>
            <exon e_start="38721" e_stop="38596"/>
            <exon e_start="38463" e_stop="38363"/>
            <exon e_start="37361" e_stop="37287"/>
            <exon e_start="37125" e_stop="36777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.966"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.941"/>
          <exon-intron don_prob="0.989" acc_prob="0.982" e_score="0.987"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="46558" e_stop="46355" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46354" i_stop="46271" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46270" e_stop="46101" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46100" i_stop="46016" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46015" e_stop="45944" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45943" i_stop="45351" i_length="593"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45350" e_stop="45200" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.969">
            <gDNA_intron_boundary i_start="45199" i_stop="42412" i_length="2788"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42411" e_stop="42303" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42302" i_stop="42222" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42221" e_stop="42104" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.954">
            <gDNA_intron_boundary i_start="42103" i_stop="40488" i_length="1616"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40487" e_stop="40340" e_length="148"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.814">
            <gDNA_intron_boundary i_start="40339" i_stop="39484" i_length="856"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39483" e_stop="39235" e_length="249"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.920">
            <gDNA_intron_boundary i_start="39234" i_stop="38722" i_length="513"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="38721" e_stop="38596" e_length="126"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38595" i_stop="38464" i_length="132"/>
          </intron>
          <exon e_serial="10" e_score="0.941">
            <gDNA_exon_boundary e_start="38463" e_stop="38363" e_length="101"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="38362" i_stop="37362" i_length="1001"/>
          </intron>
          <exon e_serial="11" e_score="0.987">
            <gDNA_exon_boundary e_start="37361" e_stop="37287" e_length="75"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.982">
            <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161"/>
          </intron>
          <exon e_serial="12" e_score="0.926">
            <gDNA_exon_boundary e_start="37125" e_stop="36777" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46558" stop="46355"/>
              <exon start="46270" stop="46101"/>
              <exon start="46015" stop="45944"/>
              <exon start="45350" stop="45200"/>
              <exon start="42411" stop="42303"/>
              <exon start="42221" stop="42104"/>
              <exon start="40487" stop="40340"/>
              <exon start="39483" stop="39235"/>
              <exon start="38721" stop="38596"/>
              <exon start="38463" stop="38363"/>
              <exon start="37361" stop="37287"/>
              <exon start="37125" stop="36777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4003-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46518" stop="46355"/>
              <exon start="46270" stop="46101"/>
              <exon start="46015" stop="45944"/>
              <exon start="45350" stop="45200"/>
              <exon start="42411" stop="42303"/>
              <exon start="42221" stop="42104"/>
              <exon start="40487" stop="40340"/>
              <exon start="39483" stop="39235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42335" stop="42303"/>
              <exon start="42221" stop="42104"/>
              <exon start="40487" stop="40340"/>
              <exon start="39483" stop="39259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTAGCAAAGTCTCAGTCTTCTTTGACAAACCCCCAAAGCGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG : GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG : GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG : GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG : AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG : GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG : TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG : CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG : GGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAG : ATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAG : ATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG : CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGA</gDNA_template>
            <first_frame> L  *  Q  S  L  S  L  L  *  Q  T  P  K  A  P  *  K  E  Y  S  *  K  F  Q  Y  C  D  F  A  R  N  I  Y  S  A  S  L  Q  S  P  L  L  C  P  V  W  K  L  R  T  Q  T  P  P  E  L  K  N  S  S  N  S  Q  M  K  H  S  K  :  G  I  S  I  R  K  L  L  I  C  T  H  K  R  L  S  *  T  V  R  M  R  C  T  M  L  T  V  R  L  L  T  P  N  W  R  N  M  E  A  Q  Y  R  M  E  L  E  L  L  K  L  T  L  D  I  Q  R :   V  I  I  G  E  E  L  H  I  W  Q  W  G  S  S  K  M  H  S  R  I  F  N  R :   S  R  N  Y  V  Q  T  T  Q  M  L  P  K  N  *  R  N  V  R  K  L  S  *  S  *  N  L  K  K  L  F  L  S  Q  N  L  R  G  V  Q  *  L  T  L  L  I  I  V  L  *  :  R  W  S  L  N  M  L  V  Q  E  *  R  E  M  L  *  H  *  I  L  *  R  R  C  W  M  T  S  K  T  R  R  T  C  I  R   : G  M  P  T  K  *  Y  C  K  Q  E  K  C  C  E  H  C  P  P  L  L  T  L  L  F  P  K  G  S  T  S  L  Y  V  V  M  Y  M  V  S :   F  M  T  S  *  I  F  S  S  S  M  G  F  H  Q  K  T  I  R  I  C  S  M  V  I  L  L  I  E  G  L  S  L  *  R  S  Y  *  H  Y  L  P  S  S  A  C  V  H  Q  :  L  Y  T  W  R  E  E  I  T  K  A  R  A  *  T  K  Y  M  G  L  R  A  R  S  D  P  S  *  V  K  Y  L  W  N  S  L  Q  K  C  S  V  A  Y  L  W  P  M  S  *  M  R  K  S  L  *  Y  M  E  V  F  L  V  L  M  A  *  S  S  L  I  L  E  Q  L  I  G  F  V  S  P  Q  K  R  :  G  *  C  V  N  C  C  G  V  I  H  N  L  S  L  V  E  D  L  V  N  E  V  L  V  F  L  S  G  E  T  *  L  K  D  S  C  R  K  I  I  *  :  I  *  W  C  D  L  M  K  *  R  M  K  V  M  R  L  S  M  T  A  N  S  *  R  C  F  P  L  P  I  I  V  T  R :   W  V  T  R  V  L  L  Y  D  L  R  L  P  I  *  S  Q  I  L  *  H  F  Q  Q  C :   H  I  L  M  S  N  Q  W  H  M  P  T  T  S  F  A  C  F  L  K  N  S  G  T  *  R  S  V  L  Q  S  M  R  P  F  V  *  L  T  K  S  I  H  I  R  R  Q  K  S  *  Y  L  Q  P  I  S  C  S  V  I  I  R  T  T  S  *  L  A  R  S  M  *  G  S  S  P  P  L  F  *  L  R  R  K  H  F  L  Y  D  N  N  V  V  W  W  I  V  L  C  I  I  Y  I  P  L  C  K  I  V  T  L  L  I  S  F  R </first_frame>
            <second_frame>  F  S  K  V  S  V  F  F  D  K  P  P  K  R  H  K  K  S  I  H  E  N  S  S  I  V  T  S  H  A  T  S  T  Q  P  A  S  S  R  H  C  Y  A  R  Y  G  S  *  E  L  K  R  L  P  S  *  R  T  Q  A  T  R  K  *  S  I  Q  R :   A  *  V  F  A  S  Y  *  S  V  H  T  S  D  *  V  E  R  *  E  C  G  V  L  C  *  P  C  V  C  S  L  Q  I  G  G  I  W  K  R  N  T  G  W  N  *  S  Y  *  N  *  P  *  I  F  K   : G  L  L  *  E  R  S  C  I  F  G  N  G  E  V  Q  R  C  T  Q  G  F  S  T   : G  Q  E  I  M  S  K  R  P  R  C  Y  Q  K  I  E  G  M  *  E  S  C  H  E  A  K  I  *  R  S  Y  F  C  P  R  I  S  E  A  F  S  S  *  L  Y  *  L  S  F  C  R :   G  G  A  S  I  C  W  C  K  N  R  G  R  C  C  N  I  R  F  C  E  E  D  A  G  *  L  Q  K  P  E  E  L  A  *  E  :  V  C  L  P  N  S  T  A  N  K  R  N  V  A  S  T  A  L  P  C  *  H  C  C  S  R  R  E  A  L  H  C  M  W  *  C  T  W  S   : V  L  *  P  P  K  Y  F  R  A  Q  W  A  S  I  R  R  Q  S  V  S  V  Q  W  *  F  C  *  *  R  V  F  L  S  R  G  H  I  D  I  I  C  L  Q  V  H  V  S  I  S :   Y  T  P  G  E  R  K  S  R  K  Q  E  H  E  Q  N  I  W  V  *  G  R  G  Q  I  Q  V  K  *  N  I  C  G  T  L  C  R  S  V  L  L  L  T  F  G  P  C  H  K  *  E  S  L  C  S  T  W  R  S  F  *  C  *  W  R  E  A  L  *  Y  *  S  N  *  S  V  L  *  A  P  R  R  G :   V  N  V  *  I  V  V  E  *  S  T  T  S  A  W  *  R  T  *  *  T  R  C  W  S  F  F  R  G  R  R  N  *  K  I  L  A  G  K  *  S  R :   F  S  G  A  I  S  *  S  E  G  *  R  L  *  D  *  A  *  R  Q  T  H  N  G  V  F  R  S  Q  L  L  *  P   : D  G  *  Q  G  C  F  Y  T  I  *  G  S  R  Y  E  A  K  Y  C  D  I  F  S  S   : A  T  S  *  C  Q  T  N  G  I  C  Q  Q  L  P  S  H  V  F  L  K  T  L  E  P  N  V  Q  Y  Y  N  R  C  D  L  L  S  D  *  P  R  A  Y  T  S  G  G  K  R  A  S  T  Y  S  Q  L  A  A  V  S  L  F  G  Q  L  P  D  L  P  A  A  C  E  D  P  H  L  L  C  F  D  *  G  V  N  T  F  S  T  I  T  M  S  C  G  G  L  S  S  V  L  F  I  F  L  F  V  R  L  L  H  F  S  F  L  L   </second_frame>
            <third_frame>   L  A  K  S  Q  S  S  L  T  N  P  Q  S  A  I  K  R  V  F  M  K  I  P  V  L  *  L  R  T  Q  H  L  L  S  Q  P  P  V  A  I  V  M  P  G  M  E  A  E  N  S  N  A  S  R  A  E  E  L  K  Q  L  A  N  E  A  F  K   : G  H  K  Y  S  Q  A  I  D  L  Y  T  Q  A  I  E  L  N  G  E  N  A  V  Y  Y  A  N  R  A  F  A  H  S  K  L  E  E  Y  G  S  A  I  Q  D  G  T  R  A  I  E  I  D  P  R  Y  S  K  :  G  Y  Y  R  R  G  A  A  Y  L  A  M  G  K  F  K  D  A  L  K  D  F  Q  Q  :  V  K  K  L  C  P  N  D  P  D  A  T  K  K  L  K  E  C  E  K  A  V  M  K  L  K  F  E  E  A  I  S  V  P  E  S  Q  R  R  S  V  A  D  S  I  D  Y  R  S  V   : E  V  E  P  Q  Y  A  G  A  R  I  E  G  D  V  V  T  L  D  F  V  K  K  M  L  D  D  F  K  N  Q  K  N  L  H  K  R :   Y  A  Y  Q  I  V  L  Q  T  R  E  M  L  R  A  L  P  S  L  V  D  I  V  V  P  E  G  K  H  F  T  V  C  G  D  V  H  G  Q  :  F  Y  D  L  L  N  I  F  E  L  N  G  L  P  S  E  D  N  P  Y  L  F  N  G  D  F  V  D  R  G  S  F  S  L  E  V  I  L  T  L  F  A  F  K  C  M  C  P  S   : A  I  H  L  A  R  G  N  H  E  S  K  S  M  N  K  I  Y  G  F  E  G  E  V  R  S  K  L  S  E  I  F  V  E  L  F  A  E  V  F  C  C  L  P  L  A  H  V  I  N  E  K  V  F  V  V  H  G  G  L  F  S  V  D  G  V  K  L  S  D  I  R  A  I  D  R  F  C  E  P  P  E  E   : G  L  M  C  E  L  L  W  S  D  P  Q  P  Q  P  G  R  G  P  S  K  R  G  V  G  L  S  F  G  G  D  V  T  K  R  F  L  Q  E  N  N  L   : D  L  V  V  R  S  H  E  V  K  D  E  G  Y  E  I  E  H  D  G  K  L  I  T  V  F  S  A  P  N  Y  C  D  Q  :  M  G  N  K  G  A  F  I  R  F  E  A  P  D  M  K  P  N  I  V  T  F  S  A  V  :  P  H  P  D  V  K  P  M  A  Y  A  N  N  F  L  R  M  F  S  *  K  L  W  N  L  T  F  S  I  T  I  D  A  T  F  C  L  T  D  Q  E  H  T  H  Q  E  A  K  E  L  V  L  T  A  N  *  L  Q  C  H  Y  S  D  N  F  L  T  C  P  Q  H  V  R  I  L  T  S  F  V  L  I  K  A  *  T  L  S  L  R  *  Q  C  R  V  V  D  C  P  L  Y  Y  L  Y  S  S  L  *  D  C  Y  T  S  H  F  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46478" stop="46355"/>
                    <exon start="46270" stop="46101"/>
                    <exon start="46015" stop="45944"/>
                    <exon start="45350" stop="45200"/>
                    <exon start="42411" stop="42303"/>
                    <exon start="42221" stop="42104"/>
                    <exon start="40487" stop="40340"/>
                    <exon start="39483" stop="39235"/>
                    <exon start="38721" stop="38596"/>
                    <exon start="38463" stop="38363"/>
                    <exon start="37361" stop="37287"/>
                    <exon start="37125" stop="37066"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1500</number_coding_nucleotides>
                  <number_encoded_amino_acids>500</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTQHLLSQPPVAIVMPGMEAENSNASRAEELKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHSKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATKKLKECEKAVMKLKFEEAISVPESQRRSVADSIDYRSVEVEPQYAGARIEGDVVTLDFVKKMLDDFKNQKNLHKRYAYQIVLQTREMLRALPSLVDIVVPEGKHFTVCGDVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIHLARGNHESKSMNKIYGFEGEVRSKLSEIFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKLSDIRAIDRFCEPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGGDVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVPHPDVKPMAYANNFLRMFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 46 chains have been computed
$ 
$ memory statistics:
$ 10760 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2152 bytes was the average size of a spliced alignment
$ 8552 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2850 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 46 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-06 23:45:48
-->
