<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-07 02:37:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="+" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="25171" stop="26056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25471" g_stop="25756" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25471" e_stop="25756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAATGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGGGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACACCGGCAAGACAAGAAACGTCTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="+" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="25530" stop="26683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25830" g_stop="26383" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25830" e_stop="26383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGATGAATTGCCACTCCAACCTACCCCAGAGATGACCAATCAGGTTCTCGCTTATCTTAGTGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACTAGCACCTCAGGTTCCGGAGGTGCAACATGCGGCTACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTAAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATGTTTAGTGTCAACCGACAGAGGCAACACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="+" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="26157" stop="28165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26457" g_stop="26643" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26644" i_stop="27387" i_length="744">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27388" g_stop="27901" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26457" e_stop="26643"/>
          <exon e_start="27388" e_stop="27901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAAGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGTGAAATCTTTTCAAGAAGTGGTAGACTTCGTAATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAAGGTTTCGGAGGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTTCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAGAACGGCCGAGGTGATGGGAAAACTAGAGCCACTGCATCACAACATGGTAGGGACAACGGGCAGACAAATGAAAGGGCCCATTGTTATGCTTTCCCTGGGAAATCTGAAGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTTCGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGAGAGCAACACTTACGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCAATCTTGGATTGTAATGCTAAAACGGTGATGTTAGCCAAGTCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTTGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTTAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCTCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAGGGCTTCATTAGACCAAGTGCATCGCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="-" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="27574" stop="26416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27274" g_stop="26716" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="-" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27274" e_stop="26716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCTTCAGATTTCCCAGGGAAAGCATAACAATGGGCCCTTTCATTTGTCTGCCCGTTGTCCCTACCATGTTGTGATGCAGTGGCTCTAGTTTTCCCATCACCTCGGCCGTTCTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGAACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGAAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335939" ref_strand="+" ref_description="SGN-U335939        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-47, score=191)">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="-" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="27957" stop="26815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27657" g_stop="27115" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="-" ref_id="SGN-U335939" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27657" e_stop="27115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTAAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGACTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATTGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACGTAAGTGTTGCTCTCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCAGATGTCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="-" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="28184" stop="26827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27884" g_stop="27127" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27884" e_stop="27127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGCGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGAGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTAAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGACTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATTGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACGTAAGTGTTGCTCTCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="-" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="27781" stop="26855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27481" g_stop="27151" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27481" e_stop="27151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGACTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATTGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACGTAAGTGTTGCTCTCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="-" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="28253" stop="26995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27953" g_stop="27295" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="-" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27953" e_stop="27295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACTTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGCGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGAGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTAAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGACTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATTGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACGTAAGTGTTGCTCTCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="-" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="28773" stop="27461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28473" g_stop="27761" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28473" e_stop="27761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGACGGTAATAGCTCGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATTCTTAGAAACTACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAATATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAACAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAACAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACTTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGCGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="-" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="30253" stop="29477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29953" g_stop="29778" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29953" e_stop="29778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCTATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAA-CTATCCCAATGGCCACCAAACTCTATCACACATGCCCGAAGCATATCCTCCAACACTTGAGTCGTCCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335078" ref_strand="+" ref_description="SGN-U335078        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="+" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="31115" stop="32314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31415" g_stop="31590" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31591" i_stop="31668" i_length="78">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31669" g_stop="32014" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="515" r_length="342" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="+" ref_id="SGN-U335078" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31415" e_stop="31590"/>
          <exon e_start="31669" e_stop="32014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGGTGCCACGTTCCGGTATCAGGATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATATGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAAGATAATGAATCTTGAAAGATGTTAATATATTCAATCTAATGAACCGAAATCCCAAATGAGCATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAG..............................................................................GATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATAT--GGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAAT-AAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322674" ref_strand="+" ref_description="SGN-U322674        Tomato 200607 #1 [7 ESTs aligned] genbank/nr: gi|34899876|ref|NP_911284.1| OJ1714_H10.21 [Oryza sativa (japonica cultivar-group)] gi|22831082|dbj|BAC15944.1| unknown protein [Oryza sativa (japonica cultivar-group)](evalue: 3e-44, score=181)">
      <seq>atcaaatggacaatggaaaatatggagaaaggccaatgattttggctatgaaaggccatccagggacaggtaagagcacacttgcacaatccatagctaaaaccctaaaatgtcctcttatagacaaagatcacttcaaagattgcactaaaccacttcaacaaatcactaaagccacaaaactcatcaatgacctatcatacgatgccatgtggcgagtcgcctccgctcagctagacttaggtctgagcgtggtgatcgactcaccactctcacgtcgagctcaccttgaccggatcattgagatcgcgaatcatagtggggctcaggttgttgtagtggagtgcaagccgagggatcaagccaagtggcgtaggcggctcgagctgaggggtgagctggtggaatatggctcaagctggcataagccatccacgtggcaagaaatggagaagttgttggaagggtatgaagggtgttgggattatgatgttggggtggaggttccaagacttgttgtggatacaacatgtgctaatggggttcaacaagtggtatcaaacgtgttggagtttgtttctaatgcatgtggtgaaaaaaagaaaaagttgtatgttaattaggaaattatgagaccgtttgatagagtatatattaataatattgaatttagttatgttaaaattacttttttctaatatttaatttgatgtattaaaaatcgttctataactactcatgcttatcaatgtacaattatactagcctgtgtattgctaatagtgtataactaatatatttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="+" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="41668" stop="43078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41968" g_stop="42782" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="+" ref_id="SGN-U322674" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41968" e_stop="42782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTGGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAACTACTCATGCTTATCAATGTACATTTATAATAGCCTGTGTATTGCTAATAGTGTATAACTAATATATTTATTAATTAGATTTT</genome_strand>
        <mrna_strand>ATCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTGGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAACTACTCATGCTTATCAATGTACAATTATACTAGCCTGTGTATTGCTAATAGTGTATAACTAATATATTTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327141" ref_strand="+" ref_description="SGN-U327141        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | ankyrin repeat family protein / BTB/POZ domain-containing protein, contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain | chr5:18246137-18248749 FORWARD | Aliases: K17O22.11, K17O22_11(evalue: 5e-125, score=258) genbank/nr: gi|49182278|gb|AAT57639.1| NIM1-like protein 2 [Lycopersicon esculentum] (evalue: 8e-165, score=583)">
      <seq>ttcattctgtcacaacaagcaatcactttttacactagtttttgggtcatcagtcagcagagtgcaactttcttccacaatacatatttggggtatgcagaatcaccttttttattttttgggagttttcatgtttatgttagaatgatgggatttcaccagcagcagccaggcttgcaggtgtgagagtttgggccaagatcatgcagagttgacctgttgactttagttttcaactttttcagattcctgaaagttttgtgctttctcttgagggatgaattcttgctagtttatttaccaaggcagtaattaagtttgaacaatggagagcggccatgagagttttgctacatcttctaatgtatcaaatgagtgcagtagtccccaggaaccaggaccaaatgttgatcatttgagtaatttatgtggtagtcttgagaaactcctgcttaatcctgaatatgactatagtgatgcagaaattgtcgttgaggggattaatgttggcgttaatcgctgtatattggctgcacgaagtcagtttttccatgaaaagtttaaggagaagaatgagaattccttgaaaaatgaaaagcctaaatatttgctgaaggatttggtgtgtgtttcctcaattggctatgaagtattcatggtcctcctgaattatttatatacaggaaagattaagtcgtctccttcagaagtttcgagttgtgttgataatgcttgtgctcatgatgcttgccgccctgccattaattatgcagtggaactcatgtatgcttcgtccacttttcagataaaagaactcgttatggtcgtagagcgctatcttgacaactttgttgataaggctactcctgaggatgtaattcctatacttttagttgcctttcaccgcaaatctaatcaacttcttgaacactgcatccagagagtggcacgatctgatctagacaatgctactcttgagaaagaactccctcatgaagttttgactgacataaaatcaaggcgcctcaagtctcgacaagggactgaacaggagtcattagagaagactccttgagtgaaaagagaattaggaggattctgaaggctctggagtctgatgacattgaattgctaacactactcctggaagagtcaaacgtcactttaaatgatgcttgtgctcttcattatgcagctgcctattgcaactccaaggttgtgaacgaggtacttgagctgggtttaggcgctgatgtcaatcttcagaactcccgaggatataatgtcctacatgttgcagctagacgaaaggagccatcaataataatgggactacttgcaaaaggagcatccgtcttggatactacacgtgatggacatacagccctatccatatgccgtagattgactcggttaaaggattacaatgatccaccgaagcaaggaaaggttactaataaagaccggttatgcattgatgttttggagagagagatgattaggaatcctatgattgggagcatgtgttcttcatcattggtgttggctgatgaattactcatgaggttgcttttatttgaaaatagagtggcattggcacggatgttatttcctcaggaagccatgctagctatggaaatagcacatgctgattcaaccgcagagtttactggcctttcagcaacaaatggcttatgcaaaaatccgggaggggttgacttgaacaaattaccgtctgagcaagtgaaaagactccaagatcggctgggcgcactactgaaaacagtggacacaggtcgacgttttttcccaaactgctcggaagtattagatagattactggaggatgacaaactagattccttgatgttagaaagtggcacccctgaggaacaaagatcaaagaaaatgcgatacacagagctcaaggatgaagttatggaggcattcaagaaagacaaagctgaaaagaactgggcgggcttctctacgtcttcctcctcttcatgttctccaaagaccaatgtcagtcacaagaatagaaaaaagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="-" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="49704" stop="43844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49404" g_stop="49130" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49129" i_stop="48618" i_length="512">
            <donor d_prob="0.029" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48617" g_stop="48061" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="832" r_length="557" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48060" i_stop="46905" i_length="1156">
            <donor d_prob="0.865" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46904" g_stop="46154" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="1588" r_length="756" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46153" i_stop="45311" i_length="843">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45310" g_stop="45113" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1589" r_stop="1786" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45112" i_stop="44410" i_length="703">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44409" g_stop="44144" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1787" r_stop="2052" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="-" ref_id="SGN-U327141" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>2047</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49404" e_stop="49130"/>
          <exon e_start="48617" e_stop="48061"/>
          <exon e_start="46904" e_stop="46154"/>
          <exon e_start="45310" e_stop="45113"/>
          <exon e_start="44409" e_stop="44144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCTGTCACAACAAGCAATCACTTTTTACACTAGTTTTTGGGTCATCAGTCAGCAGAGTGCAACTTTCTTCCACAATACATATTTGGGGTATGCAGAATCACCTTTTTTATTTTTTGGGAGTTTTCATGTTTATGTTAGAATGATGGGATTTCACCAGCAGCAGCCAGGCTTGCAGGTGTGAGAGTTTGGGCCAAGATCATGCAGAGTTGACCTGTTGACTTTAGTTTTCAACTTTTTCAGATTCCTGAAAGTTTTGTGCTTTCTCTTGAGGTACTATATTTGCCTTGTTTGGGGAAGTGGGTAGCTCAAAGATAGAATCTTTATGCTCTTAAAGAAGAAGGGGTGGGAAAAAGGACTAATATTTCCAATTCTCTTATTTTTCATTGTTTAGTTCAAGCTTGTTTTTTTGAGATTTTGGGCTAGCGTTGACCTGATTGACTTTATCATTGTTGTCTTGTTACTTGAGGTTTTTGCTCTGTTTGGGGCATTGGATAGCTTAAAGATTGATTTTTGGTGTTGTTAAAGAAGAAACTGTAGGTTTTGGGAATCAAGAAAAGATTGATTTTTTAGCCTACCCTTGAAGTCCATGTTGTGTTTTGGGTGTTCTAGCTGATGTTATGTTTTCTTTCTATCTTAAAACTTTACTTTGGATGATGACGTGGAAATAGATTATTAAGTAACATTTTTATGGTGGAGTCATGTTCTTGATGCAAGGATTTGGTGTCTGAAGTCATTAAATGTCTGGTCATACTGAGCTTATTATTGATTTCTTGCTCTCTCAGGGATGAATTCTTGCTAGTTTATTTACCAAGGCAGTAATTAAGTTTGAACAATGGAGAGCGGCCATGAGAGTTTTGCTACATCTTCTAATGTATCAAATGAGTGCAGTAGTCCCCAGGAACCAGGACCAAATGTTGATCATTTGAGTAATTTATGTGGTAGTCTTGAGAAACTCCTGCTTAATCCTGAATATGACTATAGTGATGCAGAAATTGTCGTTGAGGGGATTAATGTTGGCGTTAATCGCTGTATATTGGCTGCACGAAGTCAGTTTTTCCATGAAAAGTTTAAGGAGAAGAATGAGAATTCCTTGAAAAATGAAAAGCCTAAATATTTGCTGAAGGATTTGGTGTGTGTTTCCTCAATTGGCTATGAAGTATTCATGGTCCTCCTGAATTATTTATATACAGGAAAGATTAAGTCGTCTCCTTCAGAAGTTTCGAGTTGTGTTGATAATGCTTGTGCTCATGATGCTTGCCGCCCTGCCATTAATTATGCAGTGGAACTCATGTATGCTTCGTCCACTTTTCAGATAAAAGAACTCGTTATGTTCGTAGAGGTCAGTGTTTGCTGTGCTGGTTAAGTTCTATATATGCATTTGACTCTCATTCTTGGACTTATCATAGAATTATCCTTGTGATAAGGTTTCTTCAACAACACCAAAGCATACCAAATATAAATCACATGCTTGACTTAAACTCAATCTTTTCAGATTTATACATAAGGATTTCTGTTGAAAATGCTGATGTTCAGAAAACATCTCCTTTTTTCCTAGTATATCAGCTTATAAACAAAAATCTTCATCATCTAGGAGTCATTGTTTCTGTCATAACATATTATAATTGGTCATACTTTATTTCATTAATGATCTATCTGACGAGAATTTATGGAGCATATTCAGCATTTTCTGAACTGTCTAAAGACATGTAGTCCTACTTAGGGGCGAATTTAGTATGTAAGTTATGTGGTCATCCCAACCCAATATATTGGTTCAAACCCCGTATGTGTAAAAAAAACTCAGCTTAATAAGTACAAGTTATAGATTTCTGACCCGAATAATGATTTGAGCTGTGATAACCCGTAAGGTTCAAATTCGGAATAAAAAAGAAACTCAAGGCTTGAATTTGCCTCTTGGACTACTATGCCCAATGGTAAGTTATAGCTGCTTTGGACCTCAATCGGTAGATTTCTATCTCAGTCTGGATGATGGCCTTAAGGGGACAAGTTGTGCCTCATTAGTTTTACATATTAACAGAGTGGAGGTAATTTTATCATCAAAAAGCTTAAACTGTTGTTGTTTTTGTCAGATTTTAGGAAAGAACTCTAGGAAATTTAGCGTTCATCGAGTTACAATGATGTATGTTTTTACTGAAATACTAATCAATGAATCCGGTTGCAGATGAACTCTGTCTGCCATATGTACAGTTTTAGACTTAAGATTAACATCCTGCTTGAGTTAGGGTACCAAGTGATTATGATTTTATTGCTTTGTCCATGAAAATCAGTCTCAACAGCTTTCTACAGTCCTGAGCTATTCTAATTCTATTGTATATTTCTTGATTATACAGTAAATGACTTGCTATTGAATATATACTGATATTTGTACTAAATAGGAAATGGCAGAAGCTTTCCATGAGAATGAATGCTTCTAACTTTGTAGTTACATTTTTCTTTTTTATCTGAAGAGTTCTGATTAATATTCTGTTTGAGTGCAGCGCTATCTCGACAACTTTGTTGATAAGGCTACTCCTGAGGATGTAATTCCTATACTTTTAGTTGCCTTTCACCGCAAGTCTAATCAACTTCTTGAACACTGCATCCAGAGAGTGGCACGATCTGATCTAGACAATGCTACTCTTGAGAAAGAACTCCCTCATGAAGTTTTGACTGACATAAAATCAAGGCGCCTCAAGTCTCGACAAGGGACTGAACAGGAGTCATT-----AGACTCCTTGAGTGAAAAGAGAATTAGGAGGATTCTGAAGGCTCTGGAGTCTGATGACATTGAATTGCTAACACTACTCCTGGAAGAGTCAAACGTCACTTTAAATGATGCTTGTGCTCTTCATTATGCAGCTGCCTATTGCAACTCCAAGGTTGTGAACGAGGTACTTGAGCTGGGTTTAGGCGCTGATGTCAATCTTCAGAACTCCCGAGGATATAATGTCCTACATGTTGCAGCTAGACGAAAGGAGCCATCAATAATAATGGGACTACTTGCAAAAGGAGCATCCGTCTTGGATACTACACGTGATGGACATACAGCCCTATCCATATGCCGTAGATTGACTCGGTTAAAGGATTACAATGATCCACCGAAGCAAGGAAAGGTTACTAATAAAGACCGGTTATGCATTGATGTTTTGGAGAGAGAGATGATTAGGAATCCTATGATTGGGAGCATGTGTTCTTCATCATTGGTGTTGGCTGATGAATTACTCATGAGGTTGCTTTTATTTGAAAATAGAGGTAACTATGTTAAGTTATGTTGAAGTGAACTCTCTTAGTGATCCAGTAATCAATTTTTTATATCTATCAAAACCTATCCAATTTAATTCAAATCACATGCTTGATATTGTTGTTTATATTAAGCAAAAATAAAGATGCTTATGCATTCCTGTGTGCTCTGATTGCCACTAATTTTGCATCAGATGCTAAGATTTCAGATGGAGTTTCTAGGTACGCTGTTGAAATTTCATTTGTGTTGCACAGCTACACCATTTTCCTGAGAAACAAACGGTTTTGTGTCTGTTTGTCATAGATCAAACAGAATTCAGTGAAATAATAGTTGAGATAATGATCTTTGAAAATGTGCTTGATGTGACGCTAGAACTTTAGTTTTTGATGCTGCTGCCTGTCGTCCCATATAACAGCAAATTGAGGAACTTCATTCCCTACACTTAATTTCGTGTTTTACATCTGCTCTGCGTGGGAGTGTTGGTAGGAAGGAAAAATAAGAAGCTATGACAGGTTTTTGCTGCTTATACTTCAGTACTAAACTGAAGCAAAAACAAACACATCACAGATGCTAGGGAATTCTTCTCGGTGCTAATTAGGACTGATAGATGGGCAAGTTTGGTCCGTAAGAGTTGCACTGAAGAAGCCAATCATAACTATGGAATGAGAAAGAGTAACAAGCTTTGTTGTTGAATCTGTCCGTAGACTGATGTTTTATCAGTCAGAATAATACCCGTGTTACATAATTATGGGGAGATAAAATTGTTCTATTTGGTCTTACTTAGGCTCTGTGTTGTTCTCTTCTCCTCGACTTATGTTATTTGAATGTAGCTCCTAACTTGGCTTTTCTTGCAGTGGCATTGGCACGGATGTTATTTCCTCAGGAAGCCATGCTAGCTATGGAAATAGCACATGCTGATTCAACCGCAGAGTTTACTGGCCTTTCAGCAACAAATGGCTTATGCAAAAATCCGGGAGGGGTTGACTTGAACAAATTACCGTCTGAGCAAGTGAAAAGACTCCAAGATCGGCTGGGCGCACTACTGAAAACAGGTGATAGTAACTCTCTGTCTTCTTGATTCATTATTTAAACGAAGGAGGAGCCAGCGTTCCTAAAAGAAATTGAACTTTTGAAATTGCAACTTATAATCATTGAGTGATGGAACATATCTTGCATGTTTATAATTCACATAAATCTTCCTTTTGGTCCTACCAGGCTTGATACAATTTTTCTTACATATTTTATTCTTCAGTTTCTTACTTAATTACTTATTGAAACTTCAAGTCATTTCCGCCTGTAGGAGATTGCGGAAACAGTAGTATAGTTGCTAGATATAACTTCCCTTCCTTTCTTCATATATTTTGGCTTCAAGGATGGCAAAACATGTGCTGGGTGTTGTAAATGAATGTCATCAAGGCTTTGCGCTTCCTCATTATAAGTAGGAATAGTGTTTTTTTTTTCGTGAATAGTCTTTAGCCACATCTTCACCTTTACGAGGATAGCTAGCTTATTAAGGACATGAACCTAGATAGAAAGATTTGGAGGTCGAGGGTAAGGATAGAAGGGTAACAGGTAGGCAAATTTGTTGTATTAGTTAGTATATGTGTACTATCTTATTCTCCCAACGTTCACTATTACACGTTGTTTCATTTGTGAGGTTTGCCTACGTCCTACCCTTCCTAGACCCCAATTGTGAGGTTTGTTGTTGTTGTAGTCTTTCTCAACATTGTGTTTCTTTGTCTACCTTAATGACAGTGGACACAGGTCGACGTTTTTTCCCAAACTGCTCGGAAGTATTAGATAGATTACTGGAGGATGACAAACTAGATTCCTTGATGTTAGAAAGTGGCACCCCTGAGGAACAAAGATCAAAGAAAATGCGATACACAGAGCTCAAGGATGAAGTTATGGAGGCATTCAAGAAAGACAAAGCTGAAAAGAACTGGGCGGGCTTCTCTACGTCTTCCTCCTCTTCATGTTCTCCAAAGACCAATGTCAGTCACAAGAATAGAAAAAAGTAG</genome_strand>
        <mrna_strand>TTCATTCTGTCACAACAAGCAATCACTTTTTACACTAGTTTTTGGGTCATCAGTCAGCAGAGTGCAACTTTCTTCCACAATACATATTTGGGGTATGCAGAATCACCTTTTTTATTTTTTGGGAGTTTTCATGTTTATGTTAGAATGATGGGATTTCACCAGCAGCAGCCAGGCTTGCAGGTGTGAGAGTTTGGGCCAAGATCATGCAGAGTTGACCTGTTGACTTTAGTTTTCAACTTTTTCAGATTCCTGAAAGTTTTGTGCTTTCTCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAATTCTTGCTAGTTTATTTACCAAGGCAGTAATTAAGTTTGAACAATGGAGAGCGGCCATGAGAGTTTTGCTACATCTTCTAATGTATCAAATGAGTGCAGTAGTCCCCAGGAACCAGGACCAAATGTTGATCATTTGAGTAATTTATGTGGTAGTCTTGAGAAACTCCTGCTTAATCCTGAATATGACTATAGTGATGCAGAAATTGTCGTTGAGGGGATTAATGTTGGCGTTAATCGCTGTATATTGGCTGCACGAAGTCAGTTTTTCCATGAAAAGTTTAAGGAGAAGAATGAGAATTCCTTGAAAAATGAAAAGCCTAAATATTTGCTGAAGGATTTGGTGTGTGTTTCCTCAATTGGCTATGAAGTATTCATGGTCCTCCTGAATTATTTATATACAGGAAAGATTAAGTCGTCTCCTTCAGAAGTTTCGAGTTGTGTTGATAATGCTTGTGCTCATGATGCTTGCCGCCCTGCCATTAATTATGCAGTGGAACTCATGTATGCTTCGTCCACTTTTCAGATAAAAGAACTCGTTATGGTCGTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTATCTTGACAACTTTGTTGATAAGGCTACTCCTGAGGATGTAATTCCTATACTTTTAGTTGCCTTTCACCGCAAATCTAATCAACTTCTTGAACACTGCATCCAGAGAGTGGCACGATCTGATCTAGACAATGCTACTCTTGAGAAAGAACTCCCTCATGAAGTTTTGACTGACATAAAATCAAGGCGCCTCAAGTCTCGACAAGGGACTGAACAGGAGTCATTAGAGAAGACTCCTTGAGTGAAAAGAGAATTAGGAGGATTCTGAAGGCTCTGGAGTCTGATGACATTGAATTGCTAACACTACTCCTGGAAGAGTCAAACGTCACTTTAAATGATGCTTGTGCTCTTCATTATGCAGCTGCCTATTGCAACTCCAAGGTTGTGAACGAGGTACTTGAGCTGGGTTTAGGCGCTGATGTCAATCTTCAGAACTCCCGAGGATATAATGTCCTACATGTTGCAGCTAGACGAAAGGAGCCATCAATAATAATGGGACTACTTGCAAAAGGAGCATCCGTCTTGGATACTACACGTGATGGACATACAGCCCTATCCATATGCCGTAGATTGACTCGGTTAAAGGATTACAATGATCCACCGAAGCAAGGAAAGGTTACTAATAAAGACCGGTTATGCATTGATGTTTTGGAGAGAGAGATGATTAGGAATCCTATGATTGGGAGCATGTGTTCTTCATCATTGGTGTTGGCTGATGAATTACTCATGAGGTTGCTTTTATTTGAAAATAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATTGGCACGGATGTTATTTCCTCAGGAAGCCATGCTAGCTATGGAAATAGCACATGCTGATTCAACCGCAGAGTTTACTGGCCTTTCAGCAACAAATGGCTTATGCAAAAATCCGGGAGGGGTTGACTTGAACAAATTACCGTCTGAGCAAGTGAAAAGACTCCAAGATCGGCTGGGCGCACTACTGAAAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACACAGGTCGACGTTTTTTCCCAAACTGCTCGGAAGTATTAGATAGATTACTGGAGGATGACAAACTAGATTCCTTGATGTTAGAAAGTGGCACCCCTGAGGAACAAAGATCAAAGAAAATGCGATACACAGAGCTCAAGGATGAAGTTATGGAGGCATTCAAGAAAGACAAAGCTGAAAAGAACTGGGCGGGCTTCTCTACGTCTTCCTCCTCTTCATGTTCTCCAAAGACCAATGTCAGTCACAAGAATAGAAAAAAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338444" ref_strand="+" ref_description="SGN-U338444        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | ankyrin repeat family protein / BTB/POZ domain-containing protein, contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain | chr5:18246137-18248749 FORWARD | Aliases: K17O22.11, K17O22_11(evalue: 9e-32, score=134) genbank/nr: gi|49182278|gb|AAT57639.1| NIM1-like protein 2 [Lycopersicon esculentum] (evalue: 4e-56, score=221)">
      <seq>cggtcttgagaaactcctgcttaatcctgaatatgactatagtgatgcagaaattgtcgttgaggggattaatgttggcgttaatcgctgtatattggctgcacgaagtcagtttttccatgaaaagtttaaggagaagaacgagaattccttgaaaaatgaaaagcctaaatatttgctgaaggatttggtgtgtgttgcctcaattggctatgaagtattcatggtcctcctgaattatttatatacaggaaagattaagtcgtctccttcagaagtttcgagttgtgttgataatgcttgtgctcatgatgcttgccgccctgccattaattatgcagtggaactcatgtatgcttcgtccacttttcagataaaagaactcgttatggtcgtagaggtcagtgtttgctgtgctggttaagttctatatatgcatttgactctcattcttggacttatcatagaactatccttgtgataaggtttcttcaacaacaccaaagcataccaaatataaatcacatgcttgacttaaactcaatcttttcagatttatatataaggatttctgttgaaaatgctgatgttcagaaaacatctccttttttcctagtatatcagcttataaacaaaaatcttcatcatctaggagtcattgtttctgtcataacatattataattggtcatactttatttcattaatgatctatctgacgagaatttatggagcatattcagcattttctgaactgtctaaagacatgtagtcctacttagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="-" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="48758" stop="47377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48460" g_stop="47677" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="-" ref_id="SGN-U338444" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48460" e_stop="47677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTGAGAAACTCCTGCTTAATCCTGAATATGACTATAGTGATGCAGAAATTGTCGTTGAGGGGATTAATGTTGGCGTTAATCGCTGTATATTGGCTGCACGAAGTCAGTTTTTCCATGAAAAGTTTAAGGAGAAGAATGAGAATTCCTTGAAAAATGAAAAGCCTAAATATTTGCTGAAGGATTTGGTGTGTGTTTCCTCAATTGGCTATGAAGTATTCATGGTCCTCCTGAATTATTTATATACAGGAAAGATTAAGTCGTCTCCTTCAGAAGTTTCGAGTTGTGTTGATAATGCTTGTGCTCATGATGCTTGCCGCCCTGCCATTAATTATGCAGTGGAACTCATGTATGCTTCGTCCACTTTTCAGATAAAAGAACTCGTTATGTTCGTAGAGGTCAGTGTTTGCTGTGCTGGTTAAGTTCTATATATGCATTTGACTCTCATTCTTGGACTTATCATAGAATTATCCTTGTGATAAGGTTTCTTCAACAACACCAAAGCATACCAAATATAAATCACATGCTTGACTTAAACTCAATCTTTTCAGATTTATACATAAGGATTTCTGTTGAAAATGCTGATGTTCAGAAAACATCTCCTTTTTTCCTAGTATATCAGCTTATAAACAAAAATCTTCATCATCTAGGAGTCATTGTTTCTGTCATAACATATTATAATTGGTCATACTTTATTTCATTAATGATCTATCTGACGAGAATTTATGGAGCATATTCAGCATTTTCTGAACTGTCTAAAGACATGTAGTCCTACTTAGGGG</genome_strand>
        <mrna_strand>CGGTCTTGAGAAACTCCTGCTTAATCCTGAATATGACTATAGTGATGCAGAAATTGTCGTTGAGGGGATTAATGTTGGCGTTAATCGCTGTATATTGGCTGCACGAAGTCAGTTTTTCCATGAAAAGTTTAAGGAGAAGAACGAGAATTCCTTGAAAAATGAAAAGCCTAAATATTTGCTGAAGGATTTGGTGTGTGTTGCCTCAATTGGCTATGAAGTATTCATGGTCCTCCTGAATTATTTATATACAGGAAAGATTAAGTCGTCTCCTTCAGAAGTTTCGAGTTGTGTTGATAATGCTTGTGCTCATGATGCTTGCCGCCCTGCCATTAATTATGCAGTGGAACTCATGTATGCTTCGTCCACTTTTCAGATAAAAGAACTCGTTATGGTCGTAGAGGTCAGTGTTTGCTGTGCTGGTTAAGTTCTATATATGCATTTGACTCTCATTCTTGGACTTATCATAGAACTATCCTTGTGATAAGGTTTCTTCAACAACACCAAAGCATACCAAATATAAATCACATGCTTGACTTAAACTCAATCTTTTCAGATTTATATATAAGGATTTCTGTTGAAAATGCTGATGTTCAGAAAACATCTCCTTTTTTCCTAGTATATCAGCTTATAAACAAAAATCTTCATCATCTAGGAGTCATTGTTTCTGTCATAACATATTATAATTGGTCATACTTTATTTCATTAATGATCTATCTGACGAGAATTTATGGAGCATATTCAGCATTTTCTGAACTGTCTAAAGACATGTAGTCCTACTTAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326227" ref_strand="+" ref_description="SGN-U326227        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:10689856-10691734 REVERSE | Aliases: None(evalue: 3e-80, score=295) genbank/nr: gi|50932325|ref|XP_475690.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|48475070|gb|AAT44139.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 7e-81, score=303)">
      <seq>aggctaaaaagctgacctttttctgctttccatacttcttttgagttgttggttggactgttggaagtgagggtggttactattcgagcaattgttttcaggagaaataaagtacagaaaagatttgaagtaagtttatattgagtacaacaactattatggaaatcaacagttatcaaactcgcgctgagctgcttcttcgaagctacttgctatcagattctttcattgtctactcttctgttattggtggtgttttcgcctgcaagctggtatatgatcttagccagatattcacctctatttactttaagcgctattctgggctctcaaaattccaacaagttgaatggaataaccggtccatatctacagttcatgcaatattcattacagccatgtcactgtacttggcattctggtcagatcttttctctgatgatcagctgtctggccttgtcattatgcggagttccactttatcaacctctatcttgggggtttctttgggatattttctcactgatcttgctatgatcctttggttttatccttctttaggtggaacggaatatctggttcatcaccttctctctttggtggcactgtcatatgctatgttgactggtgaggctcagttttatgtgttcctggttttactttctgaggcaactaccccgggaatcaacttgagatggtatcttgatgtagctggattgaaaaagtcgaaagcatacctcataaatggtttcatgatggtgcttgtttggctggttgccagaatttttttattcatttacgtgttctaccacttctacatccactacgatcaggttaaggaggtatcttcatttgggattttcttggtatgtgttgtgccattggtacttgctgtgatgaacttgatttggttctggaagattgtgaaaggacttaacaagactttggcaaagaggaactgaagtttggtcctatcacatattcaaatacctcaactgttctcattgtgtacataaaaattgaatacatcaacaattgactttgctgttctcaacaagaaatgaaatggtcaatagataatatatagatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0098F01-DF1zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0098F01.1" temp_strand="+" temp_description="C07SLe0098F01.1  AC232648.1 htgs_phase:1 submitted_to_sgn_as:gi|205831302|gb|AC232648.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0098F01, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces">
        <position start="52235" stop="59147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52531" g_stop="52581" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52582" i_stop="52802" i_length="221">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="0.138" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52803" g_stop="52852" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="101" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52853" i_stop="54986" i_length="2134">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54987" g_stop="55157" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="272" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55158" i_stop="55868" i_length="711">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55869" g_stop="55957" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="361" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55958" i_stop="56037" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56038" g_stop="56176" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="500" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56177" i_stop="57726" i_length="1550">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.074" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57727" g_stop="57801" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="575" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="57802" i_stop="57876" i_length="75">
            <donor d_prob="0.052" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57877" g_stop="57998" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="697" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="57999" i_stop="58091" i_length="93">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="58092" g_stop="58167" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="773" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="58168" i_stop="58287" i_length="120">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="58288" g_stop="58347" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="833" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="58348" i_stop="58586" i_length="239">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="58587" g_stop="58846" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="1093" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1094" polyA_stop="1108"/>
      <MATCH_line gen_id="C07SLe0098F01.1" gen_strand="+" ref_id="SGN-U326227" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1093</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0098F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52531" e_stop="52581"/>
          <exon e_start="52803" e_stop="52852"/>
          <exon e_start="54987" e_stop="55157"/>
          <exon e_start="55869" e_stop="55957"/>
          <exon e_start="56038" e_stop="56176"/>
          <exon e_start="57727" e_stop="57801"/>
          <exon e_start="57877" e_stop="57998"/>
          <exon e_start="58092" e_stop="58167"/>
          <exon e_start="58288" e_stop="58347"/>
          <exon e_start="58587" e_stop="58846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAAAAAGCTGACCTTTTTCTGCTTTCCATACTTCTTTTGAGTTGTTGGTAAGTCAAAAGGCCTACTCCTACTCTTTTTTTTTTTTAATTAGTTTCCATCAATTCTTGGTTTTACTTCTTTCTGTTTGTTTTTCTATTTTAGGTTTTGGGTATGAAAGAGTAGAATAAAGATTCAATTTTTATTCTGTTTTTTTTTTTTTTTACCCTATCCCTCAGGAGCTTCTACTTTTTGCTTCGTTGGTGATTCGAATTCGCAAATCTTTTTTAAGGTTGGACTGTTGGAAGTGAGGGTGGTTACTATTCGAGCAATTGTTTTCAGGTAATCTAGTTGATTTCTTGGTACCCTTGGTTTTGGTGCTGTTTGTGATTGTTTGAAATATATAACAGAAATTTGATTGTTTGATTGTTGCTGAATTTTATTGTAGTTGAGTATTGACTTTAACTATATAGTTTTATTGCCATGAGTTTGATTAAAAGAGCTGATGGTTATATGCTGCAAAATTTCTGTAGATATAGTGGCTGTTTTGTCCTGTACACTTTGTTTGGATGGTTCTTATATATCGTTTCATAGTCTAGTGTATAGAGCTGATGGCTATAAGCTGCAAAATTTCTGTANCTAAAGAGGCTGCTTTGCCCCGTACACTTTGTTTGAATGATTGTTACAACACTTTGTTTGAATGATTGTTACATATCCTTACATATTGTTTTGGGTTGTGTTGTGTTGGCTTGATGAATATAATGTTTTGATAGATTGTATAGTTTTTCGTTGTTACATAATGTTGTACATCAGGGAAAGATGGTAAGGTAGTAGTGATTGTCAAATCTTATGGTTAAGTTTAGAAGATATATAACTAAAATAAATTGTTTGATTGTTGATGAATTTTATCTTACTAGACTACATAGTTTATAATATCCCATGAATTGCATGATTCAAAGAGCTGCTGTTATAAGCTGTAAAATCATTATGATAGTTTTGATTCTCTGCTTGTCAAAAGGGAAGCATCCTTTCTTTTCTGTCCTGCAAATTCTGTTTTTCATTATGTTTCTATTTTCTCTATTTGGATAGAGAAATGTCTAACCATCTGCTCGTTGATCCTACTGCATTTTGGTCACATCCTTATATTTTTCTACATATGTCCCTTCACGTGTGGCTCTAATTATTTTTTCATTCCTGAGAATGTGAGCATACATTTTGATGTCTTGATAAAAACTTAACTGGAACCTTGATGAATAATATGAAGCAAGAGACAGAACGAAAACAGGAAATCTAGAAGAGAAAGGGTCTCTTAGGTGTTGACATCTTTTGTTCCGTGTTGTTGCTTATTTAGATTGAGTTCTGGATTTTGCCCCCTTACACTATCTTTTTATACCTTATCGTACTGCTTTTTTCCTTAAGCATTCTTTCCACCATTAATTAGTGTGAAGGAAGATGTTTTCCGTGGGTGTCTTATACTGAAAACTACATTCTTGGACCAATTTCTAGTGTTAGATTAGCTACAAAATAGGTTTACCTATGAGAATCCTACAAGGTGTAGCATAGCATGAGGGTAGTGTCTTCATGAAAGTTTTTTAGTAAAGGCTGGCAATGACATATAAACACTGTTTGAAACAACTGATATGGTGTGAGTGTTGAAATACTCGTAAAGGAAAATAATTCTCTCGTAAGTGAGAGAAGTCATTTTCCGAAAACATAGCTTAAAGAAAACATTTCAGCAGTTCAAAGTAACCAAATATTAGAAAATGATTTCATGGATGAAATTTTTTCCTTGGACAACATTTTTTATCATAGGGAACATACTTCTAGGTTTAACATAAGCCAAGCCAGAAAATTGGCAAGCATTGCTAATAGGTTGGTTATCTTATTTAACTAATATGCTGAGAAATTGAAAATTTTAAGGAAGCCATTTCAAGTAATTTTGAGTAATTGATCATGTTTTTTCCTTATGCTTTTGATATGTATTTACTCCATCAAGCAGAAATATTAACTGATGTTCATGATTCCATAAACATGCTTTTGGTTAAGGAAATGGATCTCAACAAGATAGTCCAGAAGCAATAATTATGATCAAATTGTATTGATTGTAGCTCTGTAAAACCAACTGTATAGACATACTTTCTTTTCTATATTACCTGATTCCTCAAAGTTTATCCCCAGAGCTCTCAAAATCTCTAATACATTCGAAAGCCCTGAACATTTACAGTAGAAATATGGTATAGCATCTACATCGGGTTTAAACTCATGCAATTTTTTGAGTTCCTAGTAAAAGATAGAGAAGTATCTAAGTATAAGTTAAAACTGCTTATGGTGTCTTCGTGAGAGTGGTTGTCATGTGACCACCTATGTCATGCCATGTTGCCACATACAATCTTTGTTTTTACACTTGAAGCTGATATCTAGAATATTTATGAGATTGATATGGTTTATGTTTAATCCTTTCATTCATTATTTTCAGGAGAAATAAAGTACAGAAAAGATTTGAAGTAAGTTTATATTGAGTACAACAACTATTATGGAAATCAACAGTTATCAAACTCGCGCTGAGCTGCTTCTTCGAAGCTACATGCTATCAGATTCTTTCATTGTCTACTCTTCTGTTATTGGTGGTGTTTTCGCCTGCAAGCTGGTATGACTATTTCCTTACTACAGTGAAAATTTTTCAAGATGAGGGCCGTCATCAAATCTTTATTCAATTATTCTAATGGAGTAGTATTTTGCATTTCTGTGCTTGATTTCAATGTATAATCATGTTTATTGTGCTCAATCTTTTTTCTTGTTCAATTACCCAGACAATGTCTGAGTGGTGTTGTATAGCAATAGGGACCTCAATACAACACAGCTTAGAAGCTACTTGGTGATTCCATCACCCAAAACCAGAAGGCATAACAATATACCTACCTTCTGGTGTCCTCTCTTTGTACAACAAACTCAGCTTTAAATCTAGTCCTAATAATAGGCATCAGGAACTTGTCTTAGCTTAAACAGATCCTTAGCCTCTCCTGGAAGGTGTTGGGAGGTTTGAACATCAAAATTTGATCATTGCTTGAAGTTAGCTCAGTAAGAAAATCTGCTACTTGGTTTCTTCTCTGTAGCAGTGATTCATTTGTATTCCAGCCCTCTTCTTGTAGTTGATGATGTTTCCCAGAATTTGCTTAAGCTTCAGGTTTGAAGTGTTTTCTTTTGTCACCATATTGGCTACCAACATAGAGTCAAATTCTAAAAGTGAAATTAGTATGTCCATAAAGGAAACACCACTACTGTGCTCAATCCTCTTGAAGATATGTATACTTTACCGTTTTGTATAACTAGATATTTCTTAAATATCTATATGTTTCAGGTATATGATCTTAGCCAGATATTCACCTCTATTTACTTTAAGCGCTATGCTGGGCTCTCAAAATTCCAACAAGTTGAATGGAATAACCGGTAATTACTCATGCTTTTCTCCTCATTTTTACTATTCTTTGTCATGGTCAAGTAAATATAAAGCTTCACTTATGGTGTAGGTCCATATCTACAGTTCATGCAATATTCATTACAGCCATGTCACTGTACTTGGCATTCTGGTCAGATCTTTTCTCTGATGATCAGCTGTCTGGCCTTGTCATTATGCGGAGTTCCACTTTATCAACCTCTATCTTGGGGGTGAGTGCTTTATTATCTACTCATGTTCTTGTATACCTGTCACTATTGGTCGCGTAGACAATAAGGGAGCTGTAATAATGGCGACTTACTGGTATTATATTTGTTGGCAGAAATAGGGAATCTATAATTTCAAAAGTTGGGTTCAACTTCGTTACATTCGTGTATTTAACTTTGGTTGTTAGGCCTTTTTGAGCTTCACTGAGCTGTGATCTTAGTTTAAGTTATCCATCCATACTTCTGCTACAACAATATACCTGGTGACATCCCTCAAGTGAGTCTCGGGGTAGAGTGTACATAGACATTAATTCTTACCTCATGGAGGTGGAGAGGTTGTTTCCAGAATACCCACCGCTCAAAGTGATATATTTTAGTTTGGGGGTGGGGGTGGGGGGTGGGGTGCATTCCAAGAAATGAAGTCGGGACCTCTCACACCCGAAGTGAGAATCATACTACAATGTAGGGTAATCTGCTACATTGCTGAAATTTCTAACAGTTCTAGTGAGGTTACTTTCTAAAGCACGCATTATTTGCGGTTTTCATAGTTGGTTCAATTCCCACTTGTATGGATTTCTTGACAAGTAGGTTGCCAAAGGTTTAAAGAGGTAAATTGGCTGCTTTGTATCTACTTCAGGACAAAGCTCCTTTTTTATTGTGTGTTCACCTTTCTGATCTAACACCAGAGACGATGGGCACGGATCATCTTCTAATAGGATAGGGAGAACCTAGCATTTTAAAATGAACTGTACGGATGGGGATCCTTTCATGGTCTCCCTTTGTTTGTCCTCCTCATCTAATTACTTATCTCCAAAAGGCTTTCAAGCCAGTGAAAGTAATTCTTCATCATGTTTTTGTTTATTTTCTGGTCAATTTTTTTATTTTGCATTGTCACATTGCACCATTGATAACTTTGCCCAATCTTTGTATATTATGTCACATCAAAATCACCCAGAACTCATGGTTTAGATCAGCGTGTTACTTGTTTTTCCCGTCAGTGATTTCACATACAAAGAAAAGACAAGTTAGTTGGTTGAAGAATTAACAAAAGTAGAAAATCATTTATTTCAGAAGTTCAAATTGTGGAAAGTTATTATGCATACTCCAAGGACCAGTATACATGCATAATCTTTTATTAATGAATAACTGTAGCTGCTATGACGTCTTTATTGGACTGAAATCTTACCAAACTGAGTCTGTATCATCTATGTATTCTGGTTATGAGTGGGATTCATATGAGTGTGAGTTGCCAAAATATATTAGACGGGGCCATAGCAGTTTCTCTGTACCTGACCTGTTTGAGAAACGTAATAGCTTCAGCTGGAACATTTTGGTGAGGTGTAAAGCTGATGCCGTAGATTGTCTCAAAGATGCAATTCATCAGAGAATGTTAATCTCAAATGTAATGCTGTATCTTTCTTCATTTTTATATGTTCTGAAAGCTTGTAAAATATATATATAATTCCTTGTTAACTAAATTTATTTTCATCTCCATTTATGTGTTATCTACCAACACCTTTTTTCTTTTATAATAAGTTTTAATGTCTTCTTCATAGGTTTCTTTGGGATATTTTCTCACTGATCTTGCTATGATCCTTTGGTTTTATCCTTCTTTAGGTGGAACGGAATATGTAAGTGCTTGTCGTTTTCCTTCAATTTTATTTAGACTTGGTTTGGTGATTGACATATGCTTCTTTCTTGTGCAGCTGGTTCATCACCTTCTCTCTTTGGTGGCACTGTCATATGCTATGTTGACTGGTGAGGCTCAGTTTTATGTGTTCCTGGTTTTACTTTCTGAGGCAACTACCCCGGGAATCAACTTGAGATGGTACCAATAGAAATATCAAACCACACCCTTGCTTCTTTACGAGTTTATCTTTCCACGTTCCATTTTCTTGACCAATCCTTTGTTTCTTTATAGGTATCTTGATGTAGCTGGATTGAAAAAGTCGAAAGCATACCTCATAAATGGTTTCATGATGGTGCTTGTTTGGCTGGTATGTAAAGTATTTTCTATATCACCTATATTTCTGCTGTGATGACCGATCGAGTAGACTTCTTATCAAGTTTCTGTTCTGTTTCTTGATGAATTGCTAAATCATAGATGGTGTTTGCAGGTTGCCAGAATTTTTTTATTCATTTACGTGTTCTACCACTTCTACATCCACTACGATCAGGTAATATTCTAAATAATAAACGATAAAACTCTGCTGAAAAGAAAACGCGAACTTTCTCAAGAAAATGGACTTCTTTATTACCCCTCGAGCTTAGTACCTTTCACCCTTTTTGCTTTCTTGGTAACTCGAACTCACAACCTTTGAGTTGAAAGTGAGGGGTGCTTACCATCTGAGCAACTGTCTCCCATCAAGAAAATTGATTAATTGTGTGCTTTGTTTGTGTTATGGACTGAAAACAGGTTAAGGAGGTATCTTCATTTGGGATTTTCTTGGTATGTGTTGTGCCATTGGTACTTGCTGTGATGAACTTGATTTGGTTCTGGAAGATTGTGAAAGGACTTAACAAGACTTTGGCAAAGAGGAACTGAAGTTTGGTCCTATCACATATTCAAATACCTCAACTGTTCTCATTGTGTACATAAAAATTGAATACATCAACAATTGACTTTGCTGTTCTCAACAAGAAATGAAATGGTCAATAGATAATATATAGATGAAA</genome_strand>
        <mrna_strand>AGGCTAAAAAGCTGACCTTTTTCTGCTTTCCATACTTCTTTTGAGTTGTTG.............................................................................................................................................................................................................................GTTGGACTGTTGGAAGTGAGGGTGGTTACTATTCGAGCAATTGTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAATAAAGTACAGAAAAGATTTGAAGTAAGTTTATATTGAGTACAACAACTATTATGGAAATCAACAGTTATCAAACTCGCGCTGAGCTGCTTCTTCGAAGCTACTTGCTATCAGATTCTTTCATTGTCTACTCTTCTGTTATTGGTGGTGTTTTCGCCTGCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATGATCTTAGCCAGATATTCACCTCTATTTACTTTAAGCGCTATTCTGGGCTCTCAAAATTCCAACAAGTTGAATGGAATAACCG................................................................................GTCCATATCTACAGTTCATGCAATATTCATTACAGCCATGTCACTGTACTTGGCATTCTGGTCAGATCTTTTCTCTGATGATCAGCTGTCTGGCCTTGTCATTATGCGGAGTTCCACTTTATCAACCTCTATCTTGGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTTTGGGATATTTTCTCACTGATCTTGCTATGATCCTTTGGTTTTATCCTTCTTTAGGTGGAACGGAATAT...........................................................................CTGGTTCATCACCTTCTCTCTTTGGTGGCACTGTCATATGCTATGTTGACTGGTGAGGCTCAGTTTTATGTGTTCCTGGTTTTACTTTCTGAGGCAACTACCCCGGGAATCAACTTGAGATG.............................................................................................GTATCTTGATGTAGCTGGATTGAAAAAGTCGAAAGCATACCTCATAAATGGTTTCATGATGGTGCTTGTTTGGCTG........................................................................................................................GTTGCCAGAATTTTTTTATTCATTTACGTGTTCTACCACTTCTACATCCACTACGATCAG...............................................................................................................................................................................................................................................GTTAAGGAGGTATCTTCATTTGGGATTTTCTTGGTATGTGTTGTGCCATTGGTACTTGCTGTGATGAACTTGATTTGGTTCTGGAAGATTGTGAAAGGACTTAACAAGACTTTGGCAAAGAGGAACTGAAGTTTGGTCCTATCACATATTCAAATACCTCAACTGTTCTCATTGTGTACATAAAAATTGAATACATCAACAATTGACTTTGCTGTTCTCAACAAGAAATGAAATGGTCAATAGATAATATATAGATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="25471" PGL_stop="25756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25471" e_stop="25756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="25471" e_stop="25756" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25471" stop="25756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAATGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGGGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACACCGGCAAGACAAGAAACGTCTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  G  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  P  T  P  A  R  Q  E  T  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  M  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  *  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  G  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  C  A  N  T  N  T  G  K  T  R  N  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0098F01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25520" stop="25756"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFLSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHRQDKKRLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="25830" PGL_stop="26383"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25830" e_stop="26383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="25830" e_stop="26383" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25830" stop="26383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGATGAATTGCCACTCCAACCTACCCCAGAGATGACCAATCAGGTTCTCGCTTATCTTAGTGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACTAGCACCTCAGGTTCCGGAGGTGCAACATGCGGCTACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTAAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATGTTTAGTGTCAACCGACAGAGGCAACACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  C  *  G  G  D  S  S  T  D  *  G  S  S  K  R  G  *  G  R  G  E  *  T  S  A  K  *  *  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  W  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  A  T  C  G  Y  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  K  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  C  Q  N  V  V  A  V  T  C  L  V  S  T  D  R  G  N  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  A  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  D  E  L  P  L  Q  P  T  P  E  M  T  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  L  A  P  Q  V  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  *  C  Q  P  T  E  A  T  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  M  L  G  R  *  L  L  H  R  L  R  K  *  *  E  R  V  R  K  G  R  M  N  K  C  K  M  M  N  C  H  S  N  L  P  Q  R  *  P  I  R  F  S  L  I  L  V  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  *  H  L  R  F  R  R  C  N  M  R  L  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  M  P  K  C  G  G  G  H  M  F  S  V  N  R  Q  R  Q  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0098F01.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25831" stop="26340"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDARAVTPPPTEEVVREGEEGENEQVQNDELPLQPTPEMTNQVLAYLSGLSDQGQTPPVFSALAPQVPEVQHAATMAPRMDASLDIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26457" PGL_stop="27901"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26457" e_stop="26643"/>
            <exon e_start="27388" e_stop="27901"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.888"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.888">
            <gDNA_exon_boundary e_start="26457" e_stop="26643" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26644" i_stop="27387" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.916">
            <gDNA_exon_boundary e_start="27388" e_stop="27901" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26457" stop="26643"/>
              <exon start="27388" stop="27901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAAGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGTGAAATCTTTTCAAGAAGTGGTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCAATCTTGGATTGTAATGCTAAAACGGTGATGTTAGCCAAGTCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTTGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTTAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCTCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAGGGCTTCATTAGACCAAGTGCATCGCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  M  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  G  Y  S  E  I  F  S  R  S  G  R  L   : R  C  N  S  G  Y  D  L  A  F  S  E  F  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  V  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  L  C  *  E  N  D  *  *  R  V  F  S  F  L  G  T  S  *  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  L  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  G  L  H  *  T  K  C  I  A  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  K  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  V  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  M  L  A  K  S  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  C  A  K  K  M  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  S  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  R  C  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  Y  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  R  L  Q  *  N  L  F  K  K  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  I  L  Q  S  W  I  V  M  L  K  R  *  C  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  *  L  V  K  G  V  *  L  S  W  H  I  L  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  R  A  S  L  D  Q  V  H  R  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0098F01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26458" stop="26643"/>
                    <exon start="27388" stop="27900"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGKMSVTAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATVKSFQEVVDFDVILGMTWLSPNFAILDCNAKTVMLAKSGTDPLVWEGDYTSNPVRIISFLCAKKMISKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFSADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="28473" PGL_stop="26716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28473" e_stop="26716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="28473" e_stop="26716" e_length="1758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28473" stop="27761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27953" stop="27295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27884" stop="27127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27657" stop="27115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27481" stop="27151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27274" stop="26716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACGAATCGACGGTAATAGCTCGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATTCTTAGAAACTACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAATATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAACAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAACAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACTTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGCGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGAGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTAAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGACTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATTGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACGTAAGTGTTGCTCTCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCTTCAGATTTCCCAGGGAAAGCATAACAATGGGCCCTTTCATTTGTCTGCCCGTTGTCCCTACCATGTTGTGATGCAGTGGCTCTAGTTTTCCCATCACCTCGGCCGTTCTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGAACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGAAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACC</gDNA_template>
            <first_frame> E  S  L  D  E  S  T  V  I  A  R  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  Y  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  Y  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  Q  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  N  R  G  I  H  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  F  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  L  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  K  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  H  H  R  F  S  I  T  I  Q  D  C  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  V  S  V  A  L  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  R  K  I  T  C  D  D  S  I  R  C  L  R  F  R  F  P  R  E  S  I  T  M  G  P  F  I  C  L  P  V  V  P  T  M  L  *  C  S  G  S  S  F  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  N  I  W  R  S  V  T  L  F  *  T  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  N  *  V  T  S  E  T  L  S  S  R  V  R  T  I  K  L  T </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  F  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  I  S  I  S  S  I  N  T  I  T  N  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  T  G  A  F  I  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  E  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  Q  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  D  L  A  N  I  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  S  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  E  R  L  P  V  M  T  A  S  D  V  S  A  S  D  F  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  S  L  P  C  C  D  A  V  A  L  V  F  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  E  Q  Y  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  K  P  C  P  L  E  *  E  P  L  N  S   </second_frame>
            <third_frame>   I  P  *  R  I  D  G  N  S  S  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  S  *  K  L  H  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  I  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  S  V  Y  H  Q  *  I  R  S  Q  T  D  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  L  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  A  M  H  L  V  *  *  S  P  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  R  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  K  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  T  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  R  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  S  P  L  Q  I  S  Q  G  K  H  N  N  G  P  F  H  L  S  A  R  C  P  Y  H  V  V  M  Q  W  L  *  F  S  H  H  L  G  R  S  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  N  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  E  L  S  N  L  R  N  L  V  L  *  S  K  N  H  *  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0098F01.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27746" stop="27501"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAENTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLIIFLAQRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0098F01.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28209" stop="27970"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKQIQIWLKNPVHQTHERNRGIHKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0098F01.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27768" stop="27568"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGASTRFKINTEVNIPIWWHTRKICREHIQKLTDHRNRLNRRYLGSVILKMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0098F01.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28277" stop="28080"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYISISSINTITNRSKYGLKIPFIKLMNATGAFIRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="29953" PGL_stop="29778"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29953" e_stop="29778"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="29953" e_stop="29778" e_length="176"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29953" stop="29778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCTATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAACTATCCCAATGGCCACCAAACTCTATCACACATGCCCGAAGCATATCCTCCAACACTTGAGTCGTCCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  N  Y  P  N  G  H  Q  T  L  S  H  M  P  E  A  Y  P  P  T  L  E  S  S  S  Q  T  D  H   </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  L  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  T  I  P  M  A  T  K  L  Y  H  T  C  P  K  H  I  L  Q  H  L  S  R  P  L  R  L  T  I  </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  Y  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  V  V  L  S  D  *  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0098F01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="31415" PGL_stop="32014"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31415" e_stop="31590"/>
            <exon e_start="31669" e_stop="32014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.955"/>
          <exon-only e_score="0.899"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="31415" e_stop="31590" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31591" i_stop="31668" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.899">
            <gDNA_exon_boundary e_start="31669" e_stop="32014" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31415" stop="31590"/>
              <exon start="31669" stop="32014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAG : GATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATATGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAAGATAATGAATCTTGAAAGATGTTAATATATTCAATCTAATGAACCGAAATCCCAAATGAGCATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R :   I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  R  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  K  I  M  N  L  E  R  C  *  Y  I  Q  S  N  E  P  K  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  M  K  V  V  R  L  G  D  Q  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P   : G  *  N  M  D  R  V  S  R  F  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  R  *  *  I  L  K  D  V  N  I  F  N  L  M  N  R  N  P  K  *  A  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  *  K  *  *  D  *  G  I  R  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  :  D  R  I  W  I  G  C  H  V  S  T  P  G  *  N  M  D  Q  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  E  I  P  N  E  H  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0098F01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41968" PGL_stop="42782"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41968" e_stop="42782"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="41968" e_stop="42782" e_length="815"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41968" stop="42782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322674" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTGGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAACTACTCATGCTTATCAATGTACATTTATAATAGCCTGTGTATTGCTAATAGTGTATAACTAATATATTTATTAATTAGATTTT</gDNA_template>
            <first_frame> I  K  W  T  M  E  N  M  E  K  G  Q  *  F  W  L  *  K  A  I  Q  G  Q  V  R  A  H  L  H  N  P  *  L  K  P  *  N  V  L  L  *  T  K  I  T  S  K  I  A  L  N  H  F  N  K  S  L  K  P  Q  N  S  S  M  T  Y  H  T  M  P  C  G  E  S  P  P  L  S  *  T  *  V  *  A  W  *  S  T  H  H  S  H  V  E  L  T  L  T  G  S  L  R  S  R  I  I  V  G  L  R  L  L  *  W  S  A  S  R  G  I  K  P  S  G  V  G  G  S  S  *  G  V  S  W  W  N  M  A  Q  A  G  I  S  H  P  R  G  K  K  W  R  S  C  W  K  G  M  K  G  V  G  I  M  M  L  G  W  R  F  Q  D  L  L  W  I  Q  H  V  L  M  G  F  N  K  W  Y  Q  T  C  W  S  L  F  L  M  H  V  V  K  K  R  K  S  C  M  L  I  R  K  L  *  D  R  L  I  E  Y  I  L  I  I  L  N  L  V  M  L  K  L  L  F  S  N  I  *  F  D  V  L  K  I  V  L  *  L  L  M  L  I  N  V  H  L  *  *  P  V  Y  C  *  *  C  I  T  N  I  F  I  N  *  I   </first_frame>
            <second_frame>  S  N  G  Q  W  K  I  W  R  K  A  N  D  F  G  Y  E  R  P  S  R  D  R  *  E  H  T  C  T  I  H  S  *  N  P  K  M  S  S  Y  R  Q  R  S  L  Q  R  L  H  *  T  T  S  T  N  H  *  S  H  K  T  H  Q  *  P  I  I  R  C  H  V  A  S  R  L  R  S  A  R  L  R  S  E  R  G  D  R  L  T  T  L  T  S  S  S  P  *  P  D  H  *  D  R  E  S  *  W  G  S  G  C  C  S  G  V  Q  A  E  G  S  S  Q  V  A  *  A  A  R  A  E  G  *  A  G  G  I  W  L  K  L  A  *  A  I  H  V  A  R  N  G  E  V  V  G  R  V  *  R  V  L  G  L  *  C  W  G  G  G  S  K  T  C  C  G  Y  N  M  C  *  W  G  S  T  S  G  I  K  R  V  G  V  C  F  *  C  M  W  *  K  K  E  K  V  V  C  *  L  G  N  Y  E  T  V  *  *  S  I  Y  *  *  Y  *  I  *  L  C  *  N  Y  F  F  L  I  F  N  L  M  Y  *  K  S  F  Y  N  Y  S  C  L  S  M  Y  I  Y  N  S  L  C  I  A  N  S  V  *  L  I  Y  L  L  I  R  F  </second_frame>
            <third_frame>   Q  M  D  N  G  K  Y  G  E  R  P  M  I  L  A  M  K  G  H  P  G  T  G  K  S  T  L  A  Q  S  I  A  K  T  L  K  C  P  L  I  D  K  D  H  F  K  D  C  T  K  P  L  Q  Q  I  T  K  A  T  K  L  I  N  D  L  S  Y  D  A  M  W  R  V  A  S  A  Q  L  D  L  G  L  S  V  V  I  D  S  P  L  S  R  R  A  H  L  D  R  I  I  E  I  A  N  H  S  G  A  Q  V  V  V  V  E  C  K  P  R  D  Q  A  K  W  R  R  R  L  E  L  R  G  E  L  V  E  Y  G  S  S  W  H  K  P  S  T  W  Q  E  M  E  K  L  L  E  G  Y  E  G  C  W  D  Y  D  V  G  V  E  V  P  R  L  V  V  D  T  T  C  A  N  G  V  Q  Q  V  V  S  N  V  L  E  F  V  S  N  A  C  G  E  K  K  K  K  L  Y  V  N  *  E  I  M  R  P  F  D  R  V  Y  I  N  N  I  E  F  S  Y  V  K  I  T  F  F  *  Y  L  I  *  C  I  K  N  R  S  I  T  T  H  A  Y  Q  C  T  F  I  I  A  C  V  L  L  I  V  Y  N  *  Y  I  Y  *  L  D  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0098F01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41970" stop="42590"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMDNGKYGERPMILAMKGHPGTGKSTLAQSIAKTLKCPLIDKDHFKDCTKPLQQITKATKLINDLSYDAMWRVASAQLDLGLSVVIDSPLSRRAHLDRIIEIANHSGAQVVVVECKPRDQAKWRRRLELRGELVEYGSSWHKPSTWQEMEKLLEGYEGCWDYDVGVEVPRLVVDTTCANGVQQVVSNVLEFVSNACGEKKKKLYVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="49404" PGL_stop="44144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49404" e_stop="49130"/>
            <exon e_start="48617" e_stop="48061"/>
            <exon e_start="46904" e_stop="46154"/>
            <exon e_start="45310" e_stop="45113"/>
            <exon e_start="44409" e_stop="44144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.029" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.989" e_score="0.998"/>
          <exon-intron don_prob="0.616" acc_prob="0.983" e_score="0.984"/>
          <exon-intron don_prob="0.962" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49404" e_stop="49130" e_length="275"/>
          </exon>
          <intron i_serial="1" don_prob="0.029" acc_prob="0.913">
            <gDNA_intron_boundary i_start="49129" i_stop="48618" i_length="512"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="48617" e_stop="48061" e_length="557"/>
          </exon>
          <intron i_serial="2" don_prob="0.865" acc_prob="0.989">
            <gDNA_intron_boundary i_start="48060" i_stop="46905" i_length="1156"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="46904" e_stop="46154" e_length="751"/>
          </exon>
          <intron i_serial="3" don_prob="0.616" acc_prob="0.983">
            <gDNA_intron_boundary i_start="46153" i_stop="45311" i_length="843"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45310" e_stop="45113" e_length="198"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.984">
            <gDNA_intron_boundary i_start="45112" i_stop="44410" i_length="703"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44409" e_stop="44144" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49404" stop="49130"/>
              <exon start="48617" stop="48061"/>
              <exon start="46904" stop="46154"/>
              <exon start="45310" stop="45113"/>
              <exon start="44409" stop="44144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTCTGTCACAACAAGCAATCACTTTTTACACTAGTTTTTGGGTCATCAGTCAGCAGAGTGCAACTTTCTTCCACAATACATATTTGGGGTATGCAGAATCACCTTTTTTATTTTTTGGGAGTTTTCATGTTTATGTTAGAATGATGGGATTTCACCAGCAGCAGCCAGGCTTGCAGGTGTGAGAGTTTGGGCCAAGATCATGCAGAGTTGACCTGTTGACTTTAGTTTTCAACTTTTTCAGATTCCTGAAAGTTTTGTGCTTTCTCTTGAG : GGATGAATTCTTGCTAGTTTATTTACCAAGGCAGTAATTAAGTTTGAACAATGGAGAGCGGCCATGAGAGTTTTGCTACATCTTCTAATGTATCAAATGAGTGCAGTAGTCCCCAGGAACCAGGACCAAATGTTGATCATTTGAGTAATTTATGTGGTAGTCTTGAGAAACTCCTGCTTAATCCTGAATATGACTATAGTGATGCAGAAATTGTCGTTGAGGGGATTAATGTTGGCGTTAATCGCTGTATATTGGCTGCACGAAGTCAGTTTTTCCATGAAAAGTTTAAGGAGAAGAATGAGAATTCCTTGAAAAATGAAAAGCCTAAATATTTGCTGAAGGATTTGGTGTGTGTTTCCTCAATTGGCTATGAAGTATTCATGGTCCTCCTGAATTATTTATATACAGGAAAGATTAAGTCGTCTCCTTCAGAAGTTTCGAGTTGTGTTGATAATGCTTGTGCTCATGATGCTTGCCGCCCTGCCATTAATTATGCAGTGGAACTCATGTATGCTTCGTCCACTTTTCAGATAAAAGAACTCGTTATGTTCGTAGAG : CGCTATCTCGACAACTTTGTTGATAAGGCTACTCCTGAGGATGTAATTCCTATACTTTTAGTTGCCTTTCACCGCAAGTCTAATCAACTTCTTGAACACTGCATCCAGAGAGTGGCACGATCTGATCTAGACAATGCTACTCTTGAGAAAGAACTCCCTCATGAAGTTTTGACTGACATAAAATCAAGGCGCCTCAAGTCTCGACAAGGGACTGAACAGGAGTCATTAGACTCCTTGAGTGAAAAGAGAATTAGGAGGATTCTGAAGGCTCTGGAGTCTGATGACATTGAATTGCTAACACTACTCCTGGAAGAGTCAAACGTCACTTTAAATGATGCTTGTGCTCTTCATTATGCAGCTGCCTATTGCAACTCCAAGGTTGTGAACGAGGTACTTGAGCTGGGTTTAGGCGCTGATGTCAATCTTCAGAACTCCCGAGGATATAATGTCCTACATGTTGCAGCTAGACGAAAGGAGCCATCAATAATAATGGGACTACTTGCAAAAGGAGCATCCGTCTTGGATACTACACGTGATGGACATACAGCCCTATCCATATGCCGTAGATTGACTCGGTTAAAGGATTACAATGATCCACCGAAGCAAGGAAAGGTTACTAATAAAGACCGGTTATGCATTGATGTTTTGGAGAGAGAGATGATTAGGAATCCTATGATTGGGAGCATGTGTTCTTCATCATTGGTGTTGGCTGATGAATTACTCATGAGGTTGCTTTTATTTGAAAATAGAG : TGGCATTGGCACGGATGTTATTTCCTCAGGAAGCCATGCTAGCTATGGAAATAGCACATGCTGATTCAACCGCAGAGTTTACTGGCCTTTCAGCAACAAATGGCTTATGCAAAAATCCGGGAGGGGTTGACTTGAACAAATTACCGTCTGAGCAAGTGAAAAGACTCCAAGATCGGCTGGGCGCACTACTGAAAACAG : TGGACACAGGTCGACGTTTTTTCCCAAACTGCTCGGAAGTATTAGATAGATTACTGGAGGATGACAAACTAGATTCCTTGATGTTAGAAAGTGGCACCCCTGAGGAACAAAGATCAAAGAAAATGCGATACACAGAGCTCAAGGATGAAGTTATGGAGGCATTCAAGAAAGACAAAGCTGAAAAGAACTGGGCGGGCTTCTCTACGTCTTCCTCCTCTTCATGTTCTCCAAAGACCAATGTCAGTCACAAGAATAGAAAAAAGTAG</gDNA_template>
            <first_frame> F  I  L  S  Q  Q  A  I  T  F  Y  T  S  F  W  V  I  S  Q  Q  S  A  T  F  F  H  N  T  Y  L  G  Y  A  E  S  P  F  L  F  F  G  S  F  H  V  Y  V  R  M  M  G  F  H  Q  Q  Q  P  G  L  Q  V  *  E  F  G  P  R  S  C  R  V  D  L  L  T  L  V  F  N  F  F  R  F  L  K  V  L  C  F  L  L  R :   D  E  F  L  L  V  Y  L  P  R  Q  *  L  S  L  N  N  G  E  R  P  *  E  F  C  Y  I  F  *  C  I  K  *  V  Q  *  S  P  G  T  R  T  K  C  *  S  F  E  *  F  M  W  *  S  *  E  T  P  A  *  S  *  I  *  L  *  *  C  R  N  C  R  *  G  D  *  C  W  R  *  S  L  Y  I  G  C  T  K  S  V  F  P  *  K  V  *  G  E  E  *  E  F  L  E  K  *  K  A  *  I  F  A  E  G  F  G  V  C  F  L  N  W  L  *  S  I  H  G  P  P  E  L  F  I  Y  R  K  D  *  V  V  S  F  R  S  F  E  L  C  *  *  C  L  C  S  *  C  L  P  P  C  H  *  L  C  S  G  T  H  V  C  F  V  H  F  S  D  K  R  T  R  Y  V  R  R   : A  L  S  R  Q  L  C  *  *  G  Y  S  *  G  C  N  S  Y  T  F  S  C  L  S  P  Q  V  *  S  T  S  *  T  L  H  P  E  S  G  T  I  *  S  R  Q  C  Y  S  *  E  R  T  P  S  *  S  F  D  *  H  K  I  K  A  P  Q  V  S  T  R  D  *  T  G  V  I  R  L  L  E  *  K  E  N  *  E  D  S  E  G  S  G  V  *  *  H  *  I  A  N  T  T  P  G  R  V  K  R  H  F  K  *  C  L  C  S  S  L  C  S  C  L  L  Q  L  Q  G  C  E  R  G  T  *  A  G  F  R  R  *  C  Q  S  S  E  L  P  R  I  *  C  P  T  C  C  S  *  T  K  G  A  I  N  N  N  G  T  T  C  K  R  S  I  R  L  G  Y  Y  T  *  W  T  Y  S  P  I  H  M  P  *  I  D  S  V  K  G  L  Q  *  S  T  E  A  R  K  G  Y  *  *  R  P  V  M  H  *  C  F  G  E  R  D  D  *  E  S  Y  D  W  E  H  V  F  F  I  I  G  V  G  *  *  I  T  H  E  V  A  F  I  *  K  *  S :   G  I  G  T  D  V  I  S  S  G  S  H  A  S  Y  G  N  S  T  C  *  F  N  R  R  V  Y  W  P  F  S  N  K  W  L  M  Q  K  S  G  R  G  *  L  E  Q  I  T  V  *  A  S  E  K  T  P  R  S  A  G  R  T  T  E  N  S :   G  H  R  S  T  F  F  P  K  L  L  G  S  I  R  *  I  T  G  G  *  Q  T  R  F  L  D  V  R  K  W  H  P  *  G  T  K  I  K  E  N  A  I  H  R  A  Q  G  *  S  Y  G  G  I  Q  E  R  Q  S  *  K  E  L  G  G  L  L  Y  V  F  L  L  F  M  F  S  K  D  Q  C  Q  S  Q  E  *  K  K  V  </first_frame>
            <second_frame>  S  F  C  H  N  K  Q  S  L  F  T  L  V  F  G  S  S  V  S  R  V  Q  L  S  S  T  I  H  I  W  G  M  Q  N  H  L  F  Y  F  L  G  V  F  M  F  M  L  E  *  W  D  F  T  S  S  S  Q  A  C  R  C  E  S  L  G  Q  D  H  A  E  L  T  C  *  L  *  F  S  T  F  S  D  S  *  K  F  C  A  F  S  *   : G  M  N  S  C  *  F  I  Y  Q  G  S  N  *  V  *  T  M  E  S  G  H  E  S  F  A  T  S  S  N  V  S  N  E  C  S  S  P  Q  E  P  G  P  N  V  D  H  L  S  N  L  C  G  S  L  E  K  L  L  L  N  P  E  Y  D  Y  S  D  A  E  I  V  V  E  G  I  N  V  G  V  N  R  C  I  L  A  A  R  S  Q  F  F  H  E  K  F  K  E  K  N  E  N  S  L  K  N  E  K  P  K  Y  L  L  K  D  L  V  C  V  S  S  I  G  Y  E  V  F  M  V  L  L  N  Y  L  Y  T  G  K  I  K  S  S  P  S  E  V  S  S  C  V  D  N  A  C  A  H  D  A  C  R  P  A  I  N  Y  A  V  E  L  M  Y  A  S  S  T  F  Q  I  K  E  L  V  M  F  V  E  :  R  Y  L  D  N  F  V  D  K  A  T  P  E  D  V  I  P  I  L  L  V  A  F  H  R  K  S  N  Q  L  L  E  H  C  I  Q  R  V  A  R  S  D  L  D  N  A  T  L  E  K  E  L  P  H  E  V  L  T  D  I  K  S  R  R  L  K  S  R  Q  G  T  E  Q  E  S  L  D  S  L  S  E  K  R  I  R  R  I  L  K  A  L  E  S  D  D  I  E  L  L  T  L  L  L  E  E  S  N  V  T  L  N  D  A  C  A  L  H  Y  A  A  A  Y  C  N  S  K  V  V  N  E  V  L  E  L  G  L  G  A  D  V  N  L  Q  N  S  R  G  Y  N  V  L  H  V  A  A  R  R  K  E  P  S  I  I  M  G  L  L  A  K  G  A  S  V  L  D  T  T  R  D  G  H  T  A  L  S  I  C  R  R  L  T  R  L  K  D  Y  N  D  P  P  K  Q  G  K  V  T  N  K  D  R  L  C  I  D  V  L  E  R  E  M  I  R  N  P  M  I  G  S  M  C  S  S  S  L  V  L  A  D  E  L  L  M  R  L  L  L  F  E  N  R   : V  A  L  A  R  M  L  F  P  Q  E  A  M  L  A  M  E  I  A  H  A  D  S  T  A  E  F  T  G  L  S  A  T  N  G  L  C  K  N  P  G  G  V  D  L  N  K  L  P  S  E  Q  V  K  R  L  Q  D  R  L  G  A  L  L  K  T   : V  D  T  G  R  R  F  F  P  N  C  S  E  V  L  D  R  L  L  E  D  D  K  L  D  S  L  M  L  E  S  G  T  P  E  E  Q  R  S  K  K  M  R  Y  T  E  L  K  D  E  V  M  E  A  F  K  K  D  K  A  E  K  N  W  A  G  F  S  T  S  S  S  S  S  C  S  P  K  T  N  V  S  H  K  N  R  K  K  * </second_frame>
            <third_frame>   H  S  V  T  T  S  N  H  F  L  H  *  F  L  G  H  Q  S  A  E  C  N  F  L  P  Q  Y  I  F  G  V  C  R  I  T  F  F  I  F  W  E  F  S  C  L  C  *  N  D  G  I  S  P  A  A  A  R  L  A  G  V  R  V  W  A  K  I  M  Q  S  *  P  V  D  F  S  F  Q  L  F  Q  I  P  E  S  F  V  L  S  L  E  :  G  *  I  L  A  S  L  F  T  K  A  V  I  K  F  E  Q  W  R  A  A  M  R  V  L  L  H  L  L  M  Y  Q  M  S  A  V  V  P  R  N  Q  D  Q  M  L  I  I  *  V  I  Y  V  V  V  L  R  N  S  C  L  I  L  N  M  T  I  V  M  Q  K  L  S  L  R  G  L  M  L  A  L  I  A  V  Y  W  L  H  E  V  S  F  S  M  K  S  L  R  R  R  M  R  I  P  *  K  M  K  S  L  N  I  C  *  R  I  W  C  V  F  P  Q  L  A  M  K  Y  S  W  S  S  *  I  I  Y  I  Q  E  R  L  S  R  L  L  Q  K  F  R  V  V  L  I  M  L  V  L  M  M  L  A  A  L  P  L  I  M  Q  W  N  S  C  M  L  R  P  L  F  R  *  K  N  S  L  C  S  *  S :   A  I  S  T  T  L  L  I  R  L  L  L  R  M  *  F  L  Y  F  *  L  P  F  T  A  S  L  I  N  F  L  N  T  A  S  R  E  W  H  D  L  I  *  T  M  L  L  L  R  K  N  S  L  M  K  F  *  L  T  *  N  Q  G  A  S  S  L  D  K  G  L  N  R  S  H  *  T  P  *  V  K  R  E  L  G  G  F  *  R  L  W  S  L  M  T  L  N  C  *  H  Y  S  W  K  S  Q  T  S  L  *  M  M  L  V  L  F  I  M  Q  L  P  I  A  T  P  R  L  *  T  R  Y  L  S  W  V  *  A  L  M  S  I  F  R  T  P  E  D  I  M  S  Y  M  L  Q  L  D  E  R  S  H  Q  *  *  W  D  Y  L  Q  K  E  H  P  S  W  I  L  H  V  M  D  I  Q  P  Y  P  Y  A  V  D  *  L  G  *  R  I  T  M  I  H  R  S  K  E  R  L  L  I  K  T  G  Y  A  L  M  F  W  R  E  R  *  L  G  I  L  *  L  G  A  C  V  L  H  H  W  C  W  L  M  N  Y  S  *  G  C  F  Y  L  K  I  E  :  W  H  W  H  G  C  Y  F  L  R  K  P  C  *  L  W  K  *  H  M  L  I  Q  P  Q  S  L  L  A  F  Q  Q  Q  M  A  Y  A  K  I  R  E  G  L  T  *  T  N  Y  R  L  S  K  *  K  D  S  K  I  G  W  A  H  Y  *  K  Q  :  W  T  Q  V  D  V  F  S  Q  T  A  R  K  Y  *  I  D  Y  W  R  M  T  N  *  I  P  *  C  *  K  V  A  P  L  R  N  K  D  Q  R  K  C  D  T  Q  S  S  R  M  K  L  W  R  H  S  R  K  T  K  L  K  R  T  G  R  A  S  L  R  L  P  P  L  H  V  L  Q  R  P  M  S  V  T  R  I  E  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0098F01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48570" stop="48061"/>
                    <exon start="46904" stop="46154"/>
                    <exon start="45310" stop="45113"/>
                    <exon start="44409" stop="44144"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1722</number_coding_nucleotides>
                  <number_encoded_amino_acids>574</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMESGHESFATSSNVSNECSSPQEPGPNVDHLSNLCGSLEKLLLNPEYDYSDAEIVVEGINVGVNRCILAARSQFFHEKFKEKNENSLKNEKPKYLLKDLVCVSSIGYEVFMVLLNYLYTGKIKSSPSEVSSCVDNACAHDACRPAINYAVELMYASSTFQIKELVMFVERYLDNFVDKATPEDVIPILLVAFHRKSNQLLEHCIQRVARSDLDNATLEKELPHEVLTDIKSRRLKSRQGTEQESLDSLSEKRIRRILKALESDDIELLTLLLEESNVTLNDACALHYAAAYCNSKVVNEVLELGLGADVNLQNSRGYNVLHVAARRKEPSIIMGLLAKGASVLDTTRDGHTALSICRRLTRLKDYNDPPKQGKVTNKDRLCIDVLEREMIRNPMIGSMCSSSLVLADELLMRLLLFENRVALARMLFPQEAMLAMEIAHADSTAEFTGLSATNGLCKNPGGVDLNKLPSEQVKRLQDRLGALLKTVDTGRRFFPNCSEVLDRLLEDDKLDSLMLESGTPEEQRSKKMRYTELKDEVMEAFKKDKAEKNWAGFSTSSSSSCSPKTNVSHKNRKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48460" e_stop="47677"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="48460" e_stop="47677" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48460" stop="47677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338444" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTGAGAAACTCCTGCTTAATCCTGAATATGACTATAGTGATGCAGAAATTGTCGTTGAGGGGATTAATGTTGGCGTTAATCGCTGTATATTGGCTGCACGAAGTCAGTTTTTCCATGAAAAGTTTAAGGAGAAGAATGAGAATTCCTTGAAAAATGAAAAGCCTAAATATTTGCTGAAGGATTTGGTGTGTGTTTCCTCAATTGGCTATGAAGTATTCATGGTCCTCCTGAATTATTTATATACAGGAAAGATTAAGTCGTCTCCTTCAGAAGTTTCGAGTTGTGTTGATAATGCTTGTGCTCATGATGCTTGCCGCCCTGCCATTAATTATGCAGTGGAACTCATGTATGCTTCGTCCACTTTTCAGATAAAAGAACTCGTTATGTTCGTAGAGGTCAGTGTTTGCTGTGCTGGTTAAGTTCTATATATGCATTTGACTCTCATTCTTGGACTTATCATAGAATTATCCTTGTGATAAGGTTTCTTCAACAACACCAAAGCATACCAAATATAAATCACATGCTTGACTTAAACTCAATCTTTTCAGATTTATACATAAGGATTTCTGTTGAAAATGCTGATGTTCAGAAAACATCTCCTTTTTTCCTAGTATATCAGCTTATAAACAAAAATCTTCATCATCTAGGAGTCATTGTTTCTGTCATAACATATTATAATTGGTCATACTTTATTTCATTAATGATCTATCTGACGAGAATTTATGGAGCATATTCAGCATTTTCTGAACTGTCTAAAGACATGTAGTCCTACTTAGGGG</gDNA_template>
            <first_frame> *  S  *  E  T  P  A  *  S  *  I  *  L  *  *  C  R  N  C  R  *  G  D  *  C  W  R  *  S  L  Y  I  G  C  T  K  S  V  F  P  *  K  V  *  G  E  E  *  E  F  L  E  K  *  K  A  *  I  F  A  E  G  F  G  V  C  F  L  N  W  L  *  S  I  H  G  P  P  E  L  F  I  Y  R  K  D  *  V  V  S  F  R  S  F  E  L  C  *  *  C  L  C  S  *  C  L  P  P  C  H  *  L  C  S  G  T  H  V  C  F  V  H  F  S  D  K  R  T  R  Y  V  R  R  G  Q  C  L  L  C  W  L  S  S  I  Y  A  F  D  S  H  S  W  T  Y  H  R  I  I  L  V  I  R  F  L  Q  Q  H  Q  S  I  P  N  I  N  H  M  L  D  L  N  S  I  F  S  D  L  Y  I  R  I  S  V  E  N  A  D  V  Q  K  T  S  P  F  F  L  V  Y  Q  L  I  N  K  N  L  H  H  L  G  V  I  V  S  V  I  T  Y  Y  N  W  S  Y  F  I  S  L  M  I  Y  L  T  R  I  Y  G  A  Y  S  A  F  S  E  L  S  K  D  M  *  S  Y  L  G  </first_frame>
            <second_frame>  S  L  E  K  L  L  L  N  P  E  Y  D  Y  S  D  A  E  I  V  V  E  G  I  N  V  G  V  N  R  C  I  L  A  A  R  S  Q  F  F  H  E  K  F  K  E  K  N  E  N  S  L  K  N  E  K  P  K  Y  L  L  K  D  L  V  C  V  S  S  I  G  Y  E  V  F  M  V  L  L  N  Y  L  Y  T  G  K  I  K  S  S  P  S  E  V  S  S  C  V  D  N  A  C  A  H  D  A  C  R  P  A  I  N  Y  A  V  E  L  M  Y  A  S  S  T  F  Q  I  K  E  L  V  M  F  V  E  V  S  V  C  C  A  G  *  V  L  Y  M  H  L  T  L  I  L  G  L  I  I  E  L  S  L  *  *  G  F  F  N  N  T  K  A  Y  Q  I  *  I  T  C  L  T  *  T  Q  S  F  Q  I  Y  T  *  G  F  L  L  K  M  L  M  F  R  K  H  L  L  F  S  *  Y  I  S  L  *  T  K  I  F  I  I  *  E  S  L  F  L  S  *  H  I  I  I  G  H  T  L  F  H  *  *  S  I  *  R  E  F  M  E  H  I  Q  H  F  L  N  C  L  K  T  C  S  P  T  *  G </second_frame>
            <third_frame>   V  L  R  N  S  C  L  I  L  N  M  T  I  V  M  Q  K  L  S  L  R  G  L  M  L  A  L  I  A  V  Y  W  L  H  E  V  S  F  S  M  K  S  L  R  R  R  M  R  I  P  *  K  M  K  S  L  N  I  C  *  R  I  W  C  V  F  P  Q  L  A  M  K  Y  S  W  S  S  *  I  I  Y  I  Q  E  R  L  S  R  L  L  Q  K  F  R  V  V  L  I  M  L  V  L  M  M  L  A  A  L  P  L  I  M  Q  W  N  S  C  M  L  R  P  L  F  R  *  K  N  S  L  C  S  *  R  S  V  F  A  V  L  V  K  F  Y  I  C  I  *  L  S  F  L  D  L  S  *  N  Y  P  C  D  K  V  S  S  T  T  P  K  H  T  K  Y  K  S  H  A  *  L  K  L  N  L  F  R  F  I  H  K  D  F  C  *  K  C  *  C  S  E  N  I  S  F  F  P  S  I  S  A  Y  K  Q  K  S  S  S  S  R  S  H  C  F  C  H  N  I  L  *  L  V  I  L  Y  F  I  N  D  L  S  D  E  N  L  W  S  I  F  S  I  F  *  T  V  *  R  H  V  V  L  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0098F01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48127" stop="47690"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCSGTHVCFVHFSDKRTRYVRRGQCLLCWLSSIYAFDSHSWTYHRIILVIRFLQQHQSIPNINHMLDLNSIFSDLYIRISVENADVQKTSPFFLVYQLINKNLHHLGVIVSVITYYNWSYFISLMIYLTRIYGAYSAFSELSKDM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0098F01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48459" stop="48037"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLEKLLLNPEYDYSDAEIVVEGINVGVNRCILAARSQFFHEKFKEKNENSLKNEKPKYLLKDLVCVSSIGYEVFMVLLNYLYTGKIKSSPSEVSSCVDNACAHDACRPAINYAVELMYASSTFQIKELVMFVEVSVCCAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="52531" PGL_stop="58846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52531" e_stop="52581"/>
            <exon e_start="52803" e_stop="52852"/>
            <exon e_start="54987" e_stop="55157"/>
            <exon e_start="55869" e_stop="55957"/>
            <exon e_start="56038" e_stop="56176"/>
            <exon e_start="57727" e_stop="57801"/>
            <exon e_start="57877" e_stop="57998"/>
            <exon e_start="58092" e_stop="58167"/>
            <exon e_start="58288" e_stop="58347"/>
            <exon e_start="58587" e_stop="58846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.138" e_score="0.922"/>
          <exon-intron don_prob="0.953" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.978" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.696" e_score="0.989"/>
          <exon-intron don_prob="0.988" acc_prob="0.074" e_score="1.000"/>
          <exon-intron don_prob="0.052" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="52531" e_stop="52581" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.138">
            <gDNA_intron_boundary i_start="52582" i_stop="52802" i_length="221"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52803" e_stop="52852" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.960">
            <gDNA_intron_boundary i_start="52853" i_stop="54986" i_length="2134"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="54987" e_stop="55157" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.978">
            <gDNA_intron_boundary i_start="55158" i_stop="55868" i_length="711"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="55869" e_stop="55957" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.696">
            <gDNA_intron_boundary i_start="55958" i_stop="56037" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56038" e_stop="56176" e_length="139"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.074">
            <gDNA_intron_boundary i_start="56177" i_stop="57726" i_length="1550"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="57727" e_stop="57801" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.052" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57802" i_stop="57876" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="57877" e_stop="57998" e_length="122"/>
          </exon>
          <intron i_serial="7" don_prob="0.920" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57999" i_stop="58091" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="58092" e_stop="58167" e_length="76"/>
          </exon>
          <intron i_serial="8" don_prob="0.941" acc_prob="0.886">
            <gDNA_intron_boundary i_start="58168" i_stop="58287" i_length="120"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="58288" e_stop="58347" e_length="60"/>
          </exon>
          <intron i_serial="9" don_prob="0.914" acc_prob="0.957">
            <gDNA_intron_boundary i_start="58348" i_stop="58586" i_length="239"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="58587" e_stop="58846" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52531" stop="52581"/>
              <exon start="52803" stop="52852"/>
              <exon start="54987" stop="55157"/>
              <exon start="55869" stop="55957"/>
              <exon start="56038" stop="56176"/>
              <exon start="57727" stop="57801"/>
              <exon start="57877" stop="57998"/>
              <exon start="58092" stop="58167"/>
              <exon start="58288" stop="58347"/>
              <exon start="58587" stop="58846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATAAAAAGCTGACCTTTTTCTGCTTTCCATACTTCTTTTGAGTTGTTG : GTTGGACTGTTGGAAGTGAGGGTGGTTACTATTCGAGCAATTGTTTTCAG : GAGAAATAAAGTACAGAAAAGATTTGAAGTAAGTTTATATTGAGTACAACAACTATTATGGAAATCAACAGTTATCAAACTCGCGCTGAGCTGCTTCTTCGAAGCTACATGCTATCAGATTCTTTCATTGTCTACTCTTCTGTTATTGGTGGTGTTTTCGCCTGCAAGCTG : GTATATGATCTTAGCCAGATATTCACCTCTATTTACTTTAAGCGCTATGCTGGGCTCTCAAAATTCCAACAAGTTGAATGGAATAACCG : GTCCATATCTACAGTTCATGCAATATTCATTACAGCCATGTCACTGTACTTGGCATTCTGGTCAGATCTTTTCTCTGATGATCAGCTGTCTGGCCTTGTCATTATGCGGAGTTCCACTTTATCAACCTCTATCTTGGGG : GTTTCTTTGGGATATTTTCTCACTGATCTTGCTATGATCCTTTGGTTTTATCCTTCTTTAGGTGGAACGGAATAT : CTGGTTCATCACCTTCTCTCTTTGGTGGCACTGTCATATGCTATGTTGACTGGTGAGGCTCAGTTTTATGTGTTCCTGGTTTTACTTTCTGAGGCAACTACCCCGGGAATCAACTTGAGATG : GTATCTTGATGTAGCTGGATTGAAAAAGTCGAAAGCATACCTCATAAATGGTTTCATGATGGTGCTTGTTTGGCTG : GTTGCCAGAATTTTTTTATTCATTTACGTGTTCTACCACTTCTACATCCACTACGATCAG : GTTAAGGAGGTATCTTCATTTGGGATTTTCTTGGTATGTGTTGTGCCATTGGTACTTGCTGTGATGAACTTGATTTGGTTCTGGAAGATTGTGAAAGGACTTAACAAGACTTTGGCAAAGAGGAACTGAAGTTTGGTCCTATCACATATTCAAATACCTCAACTGTTCTCATTGTGTACATAAAAATTGAATACATCAACAATTGACTTTGCTGTTCTCAACAAGAAATGAAATGGTCAATAGATAATATATAGATGAAA</gDNA_template>
            <first_frame> F  I  K  S  *  P  F  S  A  F  H  T  S  F  E  L  L  :  V  G  L  L  E  V  R  V  V  T  I  R  A  I  V  F  R :   R  N  K  V  Q  K  R  F  E  V  S  L  Y  *  V  Q  Q  L  L  W  K  S  T  V  I  K  L  A  L  S  C  F  F  E  A  T  C  Y  Q  I  L  S  L  S  T  L  L  L  L  V  V  F  S  P  A  S  W :   Y  M  I  L  A  R  Y  S  P  L  F  T  L  S  A  M  L  G  S  Q  N  S  N  K  L  N  G  I  T   : G  P  Y  L  Q  F  M  Q  Y  S  L  Q  P  C  H  C  T  W  H  S  G  Q  I  F  S  L  M  I  S  C  L  A  L  S  L  C  G  V  P  L  Y  Q  P  L  S  W  G :   F  L  W  D  I  F  S  L  I  L  L  *  S  F  G  F  I  L  L  *  V  E  R  N  I :   W  F  I  T  F  S  L  W  W  H  C  H  M  L  C  *  L  V  R  L  S  F  M  C  S  W  F  Y  F  L  R  Q  L  P  R  E  S  T  *  D   : G  I  L  M  *  L  D  *  K  S  R  K  H  T  S  *  M  V  S  *  W  C  L  F  G  W :   L  P  E  F  F  Y  S  F  T  C  S  T  T  S  T  S  T  T  I  R :   L  R  R  Y  L  H  L  G  F  S  W  Y  V  L  C  H  W  Y  L  L  *  *  T  *  F  G  S  G  R  L  *  K  D  L  T  R  L  W  Q  R  G  T  E  V  W  S  Y  H  I  F  K  Y  L  N  C  S  H  C  V  H  K  N  *  I  H  Q  Q  L  T  L  L  F  S  T  R  N  E  M  V  N  R  *  Y  I  D  E  </first_frame>
            <second_frame>  S  *  K  A  D  L  F  L  L  S  I  L  L  L  S  C  W :   L  D  C  W  K  *  G  W  L  L  F  E  Q  L  F  S   : G  E  I  K  Y  R  K  D  L  K  *  V  Y  I  E  Y  N  N  Y  Y  G  N  Q  Q  L  S  N  S  R  *  A  A  S  S  K  L  H  A  I  R  F  F  H  C  L  L  F  C  Y  W  W  C  F  R  L  Q  A   : G  I  *  S  *  P  D  I  H  L  Y  L  L  *  A  L  C  W  A  L  K  I  P  T  S  *  M  E  *  P  :  V  H  I  Y  S  S  C  N  I  H  Y  S  H  V  T  V  L  G  I  L  V  R  S  F  L  *  *  S  A  V  W  P  C  H  Y  A  E  F  H  F  I  N  L  Y  L  G   : G  F  F  G  I  F  S  H  *  S  C  Y  D  P  L  V  L  S  F  F  R  W  N  G  I   : S  G  S  S  P  S  L  F  G  G  T  V  I  C  Y  V  D  W  *  G  S  V  L  C  V  P  G  F  T  F  *  G  N  Y  P  G  N  Q  L  E  M  :  V  S  *  C  S  W  I  E  K  V  E  S  I  P  H  K  W  F  H  D  G  A  C  L  A   : G  C  Q  N  F  F  I  H  L  R  V  L  P  L  L  H  P  L  R  S   : G  *  G  G  I  F  I  W  D  F  L  G  M  C  C  A  I  G  T  C  C  D  E  L  D  L  V  L  E  D  C  E  R  T  *  Q  D  F  G  K  E  E  L  K  F  G  P  I  T  Y  S  N  T  S  T  V  L  I  V  Y  I  K  I  E  Y  I  N  N  *  L  C  C  S  Q  Q  E  M  K  W  S  I  D  N  I  *  M  K </second_frame>
            <third_frame>   H  K  K  L  T  F  F  C  F  P  Y  F  F  *  V  V   : G  W  T  V  G  S  E  G  G  Y  Y  S  S  N  C  F  Q  :  E  K  *  S  T  E  K  I  *  S  K  F  I  L  S  T  T  T  I  M  E  I  N  S  Y  Q  T  R  A  E  L  L  L  R  S  Y  M  L  S  D  S  F  I  V  Y  S  S  V  I  G  G  V  F  A  C  K  L  :  V  Y  D  L  S  Q  I  F  T  S  I  Y  F  K  R  Y  A  G  L  S  K  F  Q  Q  V  E  W  N  N  R :   S  I  S  T  V  H  A  I  F  I  T  A  M  S  L  Y  L  A  F  W  S  D  L  F  S  D  D  Q  L  S  G  L  V  I  M  R  S  S  T  L  S  T  S  I  L  G  :  V  S  L  G  Y  F  L  T  D  L  A  M  I  L  W  F  Y  P  S  L  G  G  T  E  Y  :  L  V  H  H  L  L  S  L  V  A  L  S  Y  A  M  L  T  G  E  A  Q  F  Y  V  F  L  V  L  L  S  E  A  T  T  P  G  I  N  L  R  W :   Y  L  D  V  A  G  L  K  K  S  K  A  Y  L  I  N  G  F  M  M  V  L  V  W  L  :  V  A  R  I  F  L  F  I  Y  V  F  Y  H  F  Y  I  H  Y  D  Q  :  V  K  E  V  S  S  F  G  I  F  L  V  C  V  V  P  L  V  L  A  V  M  N  L  I  W  F  W  K  I  V  K  G  L  N  K  T  L  A  K  R  N  *  S  L  V  L  S  H  I  Q  I  P  Q  L  F  S  L  C  T  *  K  L  N  T  S  T  I  D  F  A  V  L  N  K  K  *  N  G  Q  *  I  I  Y  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0098F01.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55014" stop="55157"/>
                    <exon start="55869" stop="55957"/>
                    <exon start="56038" stop="56176"/>
                    <exon start="57727" stop="57801"/>
                    <exon start="57877" stop="57998"/>
                    <exon start="58092" stop="58167"/>
                    <exon start="58288" stop="58347"/>
                    <exon start="58587" stop="58715"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKFILSTTTIMEINSYQTRAELLLRSYMLSDSFIVYSSVIGGVFACKLVYDLSQIFTSIYFKRYAGLSKFQQVEWNNRSISTVHAIFITAMSLYLAFWSDLFSDDQLSGLVIMRSSTLSTSILGVSLGYFLTDLAMILWFYPSLGGTEYLVHHLLSLVALSYAMLTGEAQFYVFLVLLSEATTPGINLRWYLDVAGLKKSKAYLINGFMMVLVWLVARIFLFIYVFYHFYIHYDQVKEVSSFGIFLVCVVPLVLAVMNLIWFWKIVKGLNKTLAKRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 47 chains have been computed
$ 
$ memory statistics:
$ 32840 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 2189 bytes was the average size of a spliced alignment
$ 15504 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1722 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 62 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-07 02:37:42
-->
