<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 07:33:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E303596" ref_strand="+" ref_description="SGN-E303596 [cLEY-6-G5]">
      <seq>tttttttttcaggtaaaatacatatattagatgaagaaatatgagcaattttgtgctcatacagagaaatataactagcataaagctacatagcggacaacaaaatttgagctagtgtgatgaaaacttcatttttgcattcagtctttccaaccagcttggcgcgctctgcgttcccaaaggttagtcaacttcatttccttggcatacaacacaacagctctttctctcccgacttcacaagtttccgttgtagcaatgcatttctcagcctccttttggtactcggtagctaacctcctcgcctccacaaaggtgatgttcatatgatgggcgtgctccttgtcaacagcctcctgcagtttcagctcttccgataataaatcaacgaactgtttctccatctcctccttaaggtccggatcatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2745" stop="1724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2442" g_stop="2024" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="431" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E303596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2442" e_stop="2024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAATACATATATTAGATGAAGAAATATGAGCAATTTTGTGCTCATACAGAGAAATATAACTAGCATAAAGCTACATAGCGGACAACAAAATTTGAGCTAGTGTGATGAAAACTTCATTTTTGCATTCAGTCTTTCCAACCAGCTTGGCGCGCTCTGCGTTCCCAAAGGTTAGTCAACTTCATTTCCTTGGCATACAACACAACAGCTCTTTCTCTCCCGACTTCACAAGTTTCCGTTGTAGCAATGCATTTCTCAGCCTCCTTTTGGTACTCGGTAGCTAACCTCCTCGCCTCCACAAAGGTGATGTTCATATGATGGGCGTGCTCCTTGTCAACAGCCTCCTGCAGTTTCAGCTCTTCCGATAATAAATCAACGAACTGTTTCTCCATCTCCTCCTTAAGGTCCGGATCATCTTT</genome_strand>
        <mrna_strand>GTAAAATACATATATTAGATGAAGAAATATGAGCAATTTTGTGCTCATACAGAGAAATATAACTAGCATAAAGCTACATAGCGGACAACAAAATTTGAGCTAGTGTGATGAAAACTTCATTTTTGCATTCAGTCTTTCCAACCAGCTTGGCGCGCTCTGCGTTCCCAAAGGTTAGTCAACTTCATTTCCTTGGCATACAACACAACAGCTCTTTCTCTCCCGACTTCACAAGTTTCCGTTGTAGCAATGCATTTCTCAGCCTCCTTTTGGTACTCGGTAGCTAACCTCCTCGCCTCCACAAAGGTGATGTTCATATGATGGGCGTGCTCCTTGTCAACAGCCTCCTGCAGTTTCAGCTCTTCCGATAATAAATCAACGAACTGTTTCTCCATCTCCTCCTTAAGGTCCGGATCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E299660" ref_strand="-" ref_description="SGN-E299660 [cLEW-1-I19]">
      <seq>ccatcatatgaacatcacctttgtggaggcgaggaggttagctaccgagtaccaaaaggaggctgagaaatgcattgctacaacggaaacttgtgaagtcgggaaagaaagagctgttgtgttgtatgccaaggaaatgaagttgactaacctttgggaacgcagagcgcgccaagctggttggaaagactgaatgcaaaaatgaagttttcatcacactagctcaaattttgttgtccgctatgtagctttatgctagttatatttctctgtatgagcacaaaattgctcatatttcttcatctaatatatgtattttacctgctctcctgtgtaccttgccattatcaaatgaaatataaacttccccactatagtttctatgaaaaaaaaaaaaaaaaaaaaaaaaaactcgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="+" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="1822" stop="2807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2122" g_stop="2506" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="412"/>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="+" ref_id="SGN-E299660" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299660" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2122" e_stop="2506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCATATGAACATCACCTTTGTGGAGGCGAGGAGGTTAGCTACCGAGTACCAAAAGGAGGCTGAGAAATGCATTGCTACAACGGAAACTTGTGAAGTCGGGAGAGAAAGAGCTGTTGTGTTGTATGCCAAGGAAATGAAGTTGACTAACCTTTGGGAACGCAGAGCGCGCCAAGCTGGTTGGAAAGACTGAATGCAAAAATGAAGTTTTCATCACACTAGCTCAAATTTTGTTGTCCGCTATGTAGCTTTATGCTAGTTATATTTCTCTGTATGAGCACAAAATTGCTCATATTTCTTCATCTAATATATGTATTTTACCTGCTCTCCTGTGTACCTTGCCATTATCATATGAAATATAAACTTCCCCACTATAGTTTCTATG</genome_strand>
        <mrna_strand>CCATCATATGAACATCACCTTTGTGGAGGCGAGGAGGTTAGCTACCGAGTACCAAAAGGAGGCTGAGAAATGCATTGCTACAACGGAAACTTGTGAAGTCGGGAAAGAAAGAGCTGTTGTGTTGTATGCCAAGGAAATGAAGTTGACTAACCTTTGGGAACGCAGAGCGCGCCAAGCTGGTTGGAAAGACTGAATGCAAAAATGAAGTTTTCATCACACTAGCTCAAATTTTGTTGTCCGCTATGTAGCTTTATGCTAGTTATATTTCTCTGTATGAGCACAAAATTGCTCATATTTCTTCATCTAATATATGTATTTTACCTGCTCTCCTGTGTACCTTGCCATTATCAAATGAAATATAAACTTCCCCACTATAGTTTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E309943" ref_strand="+" ref_description="SGN-E309943 [cLEZ-10-J23]">
      <seq>gggttgcttccagggaatccccagcaaccactgactgggggaggatttggaaatcagcactctcaaaacataactccctttagctcagactcgttcaatactggtgttaatggatcttccaactttctggaacatggtagatgtaatgactggcaaaattccgttcagctatcgaagttccagtctaattctttcccattgactgaatcgttcattaacagccatttgccacaaattagtgcaagggaagcggcggctcatttacagaatagccctcttgattttacttccaccacctcagtttctcctccttttgaagattcaaggggagaaatccaattccggcaaagtatggctagtgctgttcagagtatgaatcaaacaccatctcaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="14286" stop="13292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13988" g_stop="13596" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E309943" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13988" e_stop="13596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGCTTCCAGGGAATCCCCAGCAACCACTGACTGGGGGAGGATTTGGAAATCAGCACTCTCAAAACATAACTCCCTTTAGCTCAGACTCGTTCAATACTGGTGTTAATGGATCTTCCAACTTTCTGGAACATGGTAGATGTAATGACTGGCAAAATTCCGTTCAGCTATCGAAGTTCCAGTCTAATTCTTTCCCATTGACTGAATCGTTCATTAACAGCCATTTGCCACAAATTAGTGCAAGGGAAGCGGCGGCTCATTTACAGAATAGCCCTCTTGATTTTACTTCCACCACCTCAGTTTCTCCTCCTTTTGAAGATTCAAGGGGAGAAATCCAATTCCGGCAAAGTATGGCTAGTGCTGTTCAGAGTATGAATCAAACACCATCTCAA</genome_strand>
        <mrna_strand>GGGTTGCTTCCAGGGAATCCCCAGCAACCACTGACTGGGGGAGGATTTGGAAATCAGCACTCTCAAAACATAACTCCCTTTAGCTCAGACTCGTTCAATACTGGTGTTAATGGATCTTCCAACTTTCTGGAACATGGTAGATGTAATGACTGGCAAAATTCCGTTCAGCTATCGAAGTTCCAGTCTAATTCTTTCCCATTGACTGAATCGTTCATTAACAGCCATTTGCCACAAATTAGTGCAAGGGAAGCGGCGGCTCATTTACAGAATAGCCCTCTTGATTTTACTTCCACCACCTCAGTTTCTCCTCCTTTTGAAGATTCAAGGGGAGAAATCCAATTCCGGCAAAGTATGGCTAGTGCTGTTCAGAGTATGAATCAAACACCATCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E308265" ref_strand="+" ref_description="SGN-E308265 [cLEZ-6-K11]">
      <seq>aacttcacaggaagtttgttgcagctgttggtcagttgggcatcgaaaaagctgtgccaaagaggattcttgacttgatgaatgttgacgggcttacaagggaaaatgtggcaagccatctgcagaagtataggctttacttgaaaaggatcaattcagttcaaacccaacaagcaaacatggttgccgcattagggggaagggactatgtgcgaatgggctcactggatgggcttggagattttcgaacattgggtggatcaggacggtatactcatgctgccttgtcatcgtacagttcagggggcatgcttggcagactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="15750" stop="13970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15450" g_stop="15403" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15402" i_stop="15309" i_length="94">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15308" g_stop="15232" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="125" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15231" i_stop="14469" i_length="763">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14468" g_stop="14270" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="324" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E308265" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15450" e_stop="15403"/>
          <exon e_start="15308" e_stop="15232"/>
          <exon e_start="14468" e_stop="14270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCACAGGAAGTTTGTTGCAGCTGTTGGTCAGTTGGGCATCGAAAGTGAGTTCTTTAGCATTGTTAAGTTTTTCTCCGACTATGCTTGTTATGAATTTTCCCGTATTAAATGGATATTTCTGTCCTATTTCTATTGCAGAAGCTGTGCCAAAGAGGATTCTTGACTTGATGAATGTTGACGGGCTTACAAGGGAAAATGTGGCAAGCCATCTGCAGGCAATAGTCTTATCTCCTTCTTCTTTGTTATTTCATTTGTGCTATTTGATCCTTTTTCTTTAAATTATTACACAATTAGTGATCTATTCGACATGGCTTGGATAGTGGATGTGAACAAGGTCAATATTTTTGAAGCACTGGCCAATAAATGTTTCACAATGATGAATCATTTGTGAGAGTATCGGATTTTGCTCTCTCGCCTTGAATTATGCTTTCATGTGGCTAATAGAGCAAAATATGAAATAACCTTGCTATATTCTAGGAATGTTAATTAGCAAATGGCTGCAAATTATGCTTCACATCTCGGGATATTTTGTAGAAATTGGGAAGTAGTAATGCAGTAGTGTCTGAATCTAAAACAGCTATCTGTTAACATTATACTGATTAAATGGAGCTCAATTCTCTTAGTTGAGTAATTTAAGAGCACGTGATGAGTAGCTGTGAGCATGCGCCAGTAAGGAGGTATGAGAGGTTGATTTAGCAAGAGTTAGTAGATGTAGCGGTAGGCCGAAGAAGAACTTGGGGAGGTGATAGAAGGTTAGTAGGTAACTGAGGGGGGTGGAGGGGGCAGAAGAACTGCATGTCTATTTTCTTACAATACAGCGTCGGATACCTTTCTTTTGAGCCGAGGATCTATTGGAAACAACCTCTCTACCTTACAAAGGTAGGGGTAAGGTCTGTGTACGTCCTACCCTCATTGTTGCTAAATAAAATAGATTACAGTTTCAGAATTCTTAATCTGGTTTTCTTTTCTGTTCTGCAGAAGTATAGGCTTTACTTGAAAAGGATCAATTCAGTTCAAACCCAACAAGCAAACATGGTTGCCGCATTAGGGGGAAGGGACTATGTGCGAATGGGCTCACTGGATGGGCTTGGAGATTTTCGAACATTGGGTGGATCAGGACGGTATACTCATGCTGCCTTGTCATCGTACAGTTCAGGGGGCATGCTTGGCAGACTAA</genome_strand>
        <mrna_strand>AACTTCACAGGAAGTTTGTTGCAGCTGTTGGTCAGTTGGGCATCGAAA..............................................................................................AAGCTGTGCCAAAGAGGATTCTTGACTTGATGAATGTTGACGGGCTTACAAGGGAAAATGTGGCAAGCCATCTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATAGGCTTTACTTGAAAAGGATCAATTCAGTTCAAACCCAACAAGCAAACATGGTTGCCGCATTAGGGGGAAGGGACTATGTGCGAATGGGCTCACTGGATGGGCTTGGAGATTTTCGAACATTGGGTGGATCAGGACGGTATACTCATGCTGCCTTGTCATCGTACAGTTCAGGGGGCATGCTTGGCAGACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E332783" ref_strand="+" ref_description="SGN-E332783 [cTOD-18-F9]">
      <seq>acaaacccaaaaaacagagaacaaaaaaaaaaatcatatccaaaaaaaaaaaaagcttttttctctgattttttcaacagaaattcttgaacttttatttttttggtcaatttgatggcctaaatcttaattaggaaaatggggaatgtaacagcaggtgtagctgcaaaatttgcattttttccaccagagccaccaacatatgaagtatttaaagatgaagatggaagggtttgttttagtggaataacagctgataagaatgtaaatgttcatttgttagatacaaaaggtggtaataaaattgtagctactttttggaaacatccatctggcagatttacacttctttattcacatggaaatgctgctgatttgggacaaatgattgatctttttgttgagcttagagctcatcttcgtgttaatattatgtgctatgattacacgggatatggtggatcttcaggtaagccatctgagttcaacacgtaccacgacatagaagctgtctataattgtttgaagagtgaatacagcattaagcaagaggatatcatcctatatggacaatctgttggcagtggaccgacactacacttggcatctcgccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="33384" stop="30887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33084" g_stop="32650" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32649" i_stop="31552" i_length="1098">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31551" g_stop="31515" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="474" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31514" i_stop="31328" i_length="187">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31327" g_stop="31187" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="615" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E332783" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33084" e_stop="32650"/>
          <exon e_start="31551" e_stop="31515"/>
          <exon e_start="31327" e_stop="31187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCCAAAAAACAGAGAAC-AAAAAAAAAATCATATCCA-AAAAAAAAAAAGCTTTTTTCTCTGATTTTTTCAACAGAAATTCTTGAACTTTTATTTTTTTGGTCAATTTGATGGCCTAAATCTTAATTAGGAAAATGGGGAATGTAACAGCAGGTGTAGCTGCAAAATTTGCATTTTTTCCACCAGAGCCACCAACATATGAAGTATTTAAAGATGAAGATGGAAGGGTTTGTTTTAGTGGAATAACAGCTGATAAGAATGTAAATGTTCATTTGTTAGATACAAAAGGTGGTAATAAAATTGTAGCTACTTTTTGGAAACATCCATCTGGCAGATTTACACTTCTTTATTCACATGGAAATGCTGCTGATTTGGGACAAATGATTGATCTTTTTGTTGAGCTTAGAGCTCATCTTCGTGTTAATATTATGTGGTATGTTTTTATATCTTCTTTTTTTTTTTAAATCATGGGGTTTATTGTTTTTGATAGTATTGCTAATGGTTGTTATAAAGTTTTGATCTTTAGTTGTTTTCCTGTATATTGCTTCTGGCTAATATGTTCTTTGTTGAGCTGTTTGTTGAGCTTATAGATTATTCTACTTTCTTTTTTTGTTTTGGTGTAATGGGGTGTTTCTTGTTTTTGATAGTATTGCTAATGGTTTTTATAAAGTTTTGATCTTTACTTGTTTTCTTGTATATTGCTTCGGCCTAATATGTTCTTTGTTGACCTGTTTGTTGAGCTTATAGATGATTCCTCTTTCTTTTATTTGTTTTGGGGTAATGGGGTGTTTCTTTTTTTCTTTTTTTTTTTTGTTTTGAGGGTGTTTTTAGAATATTTGATTTCATGGTTTTTGATTGTATTGCTAATGATTGTTGTAAAGTTTTGATCTTTATTTTGATTTCTTGTATATTGCTTCTGCCTAATAATATGTGGTATGTTCCCTTTTATTGATAATATTCTTCTTCTGTTTTTTTTCTGATCCCTTTCTGTTTTGGGGTTGTGGGGTGTTCTCTTTTCTGGTTTGAGGGGTGTTTTTAGGATAATTTATTTCATGGGGTTTCTTCCTTTTTGATTGTATTGCTAATGGTTGTTGTAAAGTTTTGATCTTTACTTTGTTTTCTTGTATTGCTTCTGCCTAATATTATGTGCTATGTTTCTTTTTATTGATAATATTCTCCTTTTTTTGTCTCCCTTATGTTTTGGGGTTGTGTGGTGTTTTTAGGATAATTGATTTCATGGGGTTGCTTGTTTTCGATAGTATTGTCCATGGTTGTTCCAAAGTTTTGATCTTTACTTTGATTTGTGGTATATTGCTTCTGCCTAATATATTCTTGTTCTAATTCTGTGTATGAACTCTCTGTATTTTTTTGGTTTCTGAACTCGTTAACTTGTCTTTCCTAAACTTTCATTATTTTTGTAGTCGCATTAACACTGTAACATCATGTAATTATAATTCTTGAAAGTTCTGCAATTTTGTTATAATCTCCTTTGCCTTTGGCACTGATGTCATGTTTGTGTGCTGGATTGCAGCTATGATTACACGGGATATGGTGGATCTTCAGGTAAGGTAAGCAAATTATCATGCTAACTTCCATTTCTAACAACAATTGGCATCATATCGTTGATCTATCTCGTCAGCACGATGATGCCAATAAAACAGTATCATCGTGCACGTGTGTTCATTTTCTTTTGCTTCTCTCCTCTTGCCTTCTGAGTTTTGTCTCCAAACATTGATGTCTGTTTATGTCTATCAGCCATCTGAGTTCAACACGTACCACGACATAGAAGCTGTCTATAATTGTTTGAAGAGTGAATACAGCATTAAGCAAGAGGATATCATCCTATATGGACAATCTGTTGGCAGTGGACCGACACTACACTTGGCATCTCGCCTA</genome_strand>
        <mrna_strand>ACAAACCCAAAAAACAGAGAACAAAAAAAAAAATCATATCCAAAAAAAAAAAAAGCTTTTTTCTCTGATTTTTTCAACAGAAATTCTTGAACTTTTATTTTTTTGGTCAATTTGATGGCCTAAATCTTAATTAGGAAAATGGGGAATGTAACAGCAGGTGTAGCTGCAAAATTTGCATTTTTTCCACCAGAGCCACCAACATATGAAGTATTTAAAGATGAAGATGGAAGGGTTTGTTTTAGTGGAATAACAGCTGATAAGAATGTAAATGTTCATTTGTTAGATACAAAAGGTGGTAATAAAATTGTAGCTACTTTTTGGAAACATCCATCTGGCAGATTTACACTTCTTTATTCACATGGAAATGCTGCTGATTTGGGACAAATGATTGATCTTTTTGTTGAGCTTAGAGCTCATCTTCGTGTTAATATTATGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGATTACACGGGATATGGTGGATCTTCAGGTAAG...........................................................................................................................................................................................CCATCTGAGTTCAACACGTACCACGACATAGAAGCTGTCTATAATTGTTTGAAGAGTGAATACAGCATTAAGCAAGAGGATATCATCCTATATGGACAATCTGTTGGCAGTGGACCGACACTACACTTGGCATCTCGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E319851" ref_strand="+" ref_description="SGN-E319851 [cTOB-12-P12]">
      <seq>cgacgtccatgatgattggaaccttgaagaagataggaaggctcttcaactcttgaagccagatttggtgctctttacaggggattttgggaatgaaaatgtggatctagtccgaagcatagcagatctagagatcaccaaagctgttattctagggaaccatgacgcatggaatactcaaaagttctctgggaaggaaaaagatgctgttcaacttcagctggaatgtcttggtgatgagcatgttggttaccgtcgaatggatctccctatgctaaaactcagtattgttggtggacgacctttttcttgtggtggtaggcccttattccggaaacagcttctcaaagcaaggtatggagtccgtgatatggatggaagtgctgagagaatcttacaagctgccatgggcactccagaggatcattcaattatattccttgctcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="43632" stop="38887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43332" g_stop="43282" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="58" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43281" i_stop="41913" i_length="1369">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41912" g_stop="41891" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="80" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41890" i_stop="41749" i_length="142">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41748" g_stop="41634" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="195" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41633" i_stop="41143" i_length="491">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41142" g_stop="41110" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="228" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41109" i_stop="40041" i_length="1069">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40040" g_stop="39915" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="354" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39914" i_stop="39284" i_length="631">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39283" g_stop="39187" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="451" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E319851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43332" e_stop="43282"/>
          <exon e_start="41912" e_stop="41891"/>
          <exon e_start="41748" e_stop="41634"/>
          <exon e_start="41142" e_stop="41110"/>
          <exon e_start="40040" e_stop="39915"/>
          <exon e_start="39283" e_stop="39187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGATGATTGGAACCTTGAAGAAGATAGGAAGGCTCTTCAACTCTTGAAGGTACTTGGCATCTTTATATTGTTTAATTTATTCTAATTTTCTTTTTGGGCTAGGATTATTGAGGTATTGTTTGTTGTGAATATGCTAGTTTCTACTAACCATTAAACTGTTGAAAAGCTAGTTTCTTTCTGGGGAAATTGTAGTTCACAAAATAATCCAGCCAAAGTAACAGAAATCAGATCTACTAACCATTAAATTGTTGAAGGATTGATATTGTTTCTCGGTTAATTAGCCAAATTTAGTACTTCAAGCTCACTTTGCATTGAACTTTGATTCTATTAGCTGTCAAATATGTGTCCAAATGGAGCTAGAAATTGGTTATAATCTCAATGGAAGCTCTCTGAATTGGATTAATTAACCAAAAAGGAAGTCAAACGTTCCTTAAATTTGACGCTTTTGACTGCCAATTGTTATTAGTCTTAACATGTAGACCAAGTATTGTAGTATGCATTAATAATTCGTGTTATGGAACATCGTCATATTTTTTGTGTACTCGCATAATGCTTTCTCGCAATGGCAAGTATTATCTTGTTTAATGGAACAGTTGCCATGCTAAAGCTGCATCTGAATAGCATAGCAGATTAAAAACATGTCCTGCATAGATGTTGCACAAGAGGATAGATGACTACAAATTATGAAGCCTTACGTATCTTGCTTTTGGGTCTTATTTTTCCCTTGCTCTTTGCCTCATTAAACTGAACCATAGCTGTATTTTGTTGTGTACCACTTAATTTTGTAAACTAATTGTGTCCCGCTCTGCTATTCTATGAAGGTATTTAGTTGGAAGGAATGTAAAGGTATCATGACTAACAAAATTAATTCATATGTTTATGAAACAAAAATAATTTGATCAAAATTGTGGAAAGTATCTTTCATACTTCATTCCTCTCTTTAGTGGATAATTAGCTATCGCTGCTAACTTTCTTTCTCTATGAGCAGTGGATATGCTTTGGATATGACTTATTCTACACACGTAATTGCAGTACAGTGTTCAAGAAATTTTGAGAAATGAAACTCTGAGAGTTGCTTCAGAGTTTCTTCTCCATCCCACTTTTTTGACATGGAAGAAATAATTTTTATCTGCCCATCTGTACTTTGTGTAGTTTTGAGGAATGATTTCTATTATTTTTCATAAAAATGTTATAGGCGTACAACGTAACCATAAGAGATCGTGAAATGCAAGTTTCATTATGAAAACTAATTTTAGAAACCAAACTTTTGGGAGGATCCCTAGTGTTTCCACTTTTTCTTTCTTTCTTGGGACAATGAAGACCTTCTCTGGCGAAATCCTTTTACTTTTCTTTTATAACATCTCTTGGTTCATTTCCTTCTGTCAGCTAACGATTTTTGTTGTTGTGAAAATTTGCAGCCAGATTTGGTGCTCTTTACAGGCATGTCTTCTAATTATCTCCCATCTATTTATCCAGAATGCATACTACATAGTTATTGTATTCTTTCAACTACTATTTTTCATTCACTAGCCAGGTTAGATTGGAAGAATCATCAGTTCACTTCATTTTGTCCTTGCTTCAGGGGATTTTGGGAATGAAAATGTGGATCTAGTCCGAAGCATAGCAGATCTAGAGATCACCAAAGCTGTTATTCTAGGGAACCATGACGCATGGAATACTCAAAAGTTCTCTGGGAAGTAAGTCCAAGTTCCATTTTATCTGACTGCTTAGAGGAAAAGATCACTTTCTCATTCATTTTCCATTATTTGTTGGAATCAAACTCTGGTAGATAGGGTGTTCGGATCAGTGTTGTGGCTTCATGAAGGTTGTTGTTGATGATGGCAAATGGGGTGATAACTGTGGTAGTGTGTGAGTAGGATTAATTAGCATTGATTTTGGTGGTAGAGCCCGTGGAAAATCATTGATAAATTTGAAGGATGTTTTCCTTGAAACATAACTTCCTCAGAAACTTTGATCATTAACTGTAAACATCTTTAGTGACTTGAAAATATGAAGTATCAAAAAAGGAAGAAGCATATTGTCAGGCTCGTTTTTTCCTGTCCACCTAGTTGGCATGTCTGATGTCTCAACAAATTATTTTTCTCTAATTGTGAGATGTACTACCTCGTAACTAGTTTTTTGAATTCATACACTTCTTTTTTCTTAGCGTGTGCTGTTCAATTTGTAGGGAAAAAGATGCTGTTCAACTTCAGCTGGAATGGTATGTCTTCCGAGATATATAATTATTTAGTTTCAATAAAACTATACATCTATATGTGTTAAATAGCATAGCTATGTGCTTATTTATGATGTTTAGGACTGTCAGTTTCTCACTCTGGCATGACCTTCCATCTTGTGTTCCTCACAATCTCAATACCACTTTGTCTCAGAAGTAAGGAAGATAGATGATAAGATAGGTCATTGCTTGATAGAAAATAAATCGCCAGGATCCAGAAAGGTCCTCTTGGTACATCTGTTAGTAGTTGGACTATGTACATCCAACACATGTAAGTAGGTTATGGAAAAAGAAAAGATCACGCAACAGAAACATGTGCATATCTGCACATCTGGAAAATATTTGCTGCTAAAAGTGAAGATAGCAATATAATAATGAAGAATGGGAACTCTTTTGGCTGGGCAATTATCCACAAGCTTAACTTTCCACAATGAGCACTTAAAAAGTTTATTTAAATTTGGCAAATTATAGATTTATTCACCACAAGTAATCTGAACTAAGTCGTAAAATCTGTGTTCGCTGAATGAGTCTTTCTCGGCATCAAGGAGTCATGGTTGATTTAACCCCAGACCAGTGAAAGATTGATTCTGAGATTCTGGCTCATGTTGCAAAGATTTCCCTTAAAATTCAACTATCCGGCATACAAATTTGTCTGATGGTTCAATTCTTTCGATTATGATATTTTATCTTGGAAAGTATTAGGGCTTCAACTACTAAACTACCTTGTATAGTATACAATTTTACTTATCATAATTGAGGGGAAAACAAAGACTAAGATTGATTTTTAAGCTAGGTCATAACCAAAGAAAAATCATGATATAACATCAGTTCATATCCATATTCTGAAGGACAATTTCTTTTCTTTTTTTTTAACTTTTCCTTGTTATTTTCTTGAATAAAGAGCTAAATACCAGAAAAATGAATCAGACAGCTAAGTCCTTCCCATAATAAAGGATTTCTGTCTTGACCTATTTTATGTCCCATTTTATATAATAAAAGGAAAAGTAACTTATACCATAAAATCTTGTTGGCGTGATGACAATTTATGTGTCAGTCTTGGTGATGAGCATGTTGGTTACCGTCGAATGGATCTCCCTATGCTAAAACTCAGTATTGTTGGTGGACGACCTTTTTCTTGTGGTGGTAGGCCCTTATTCCGGAAACAGCTTCTCAAAGCAAGGTTTGTGGTCCTAATCTAGTTTGTTAGTAATTTCCTCTTCAATGCACATTGACTTTTCATCGTAACTTAGTCTATAATTTGTAAATGTTGTTTAGCCCAAGTATCTAAGCATGTTTAGCATTGTCTATTAATTTGTTGTAACCAATGGTACAGAACTTATGGTTTGAAGTTTCTGATGCATTTTGTTTGTTCTTGTAGAGGTATAAGCGTACCTCTCCTATGTAGACATCGACTCTTTATAGTCTTCAACATTTATATGCCTAATTCACAATGTCTTTTCTTCAAATGCTAGAAAAATACATTACAAGAATCAACAAAATGACTGAATTTGTTTCTGGTCACTCTCCAAGTGTTTTCCCATTTTCTTCTTCTAGCTGTGGAGTGTCCTTACAGCAAAAACTATAGAAATAACTTAATTACTTGATATAATCTTTTTCAAAATTTTCTGATCGGAAAGGAAAACTTTCCATATACCGATATAGTCTAAAACCAATTTAGTGACTTCAATCTTTGCCTCTTTTGCCTTTATCAGAAGCAGCCCAAGCCAAATAAAGCGCAATATCATGCAAATAATATCTGCAATCTCAAGTTTCTGCTTTAACTTTACATCCTCTCAATTTTACCTTCTTAGGTATGGAGTCCGTGATATGGATGGAAGTGCTGAGAGAATCTTACAAGCTGCCATGGGCACTCCAGAGGATCATTCAATTATATTCCTTGCTCATAAT</genome_strand>
        <mrna_strand>CATGATGATTGGAACCTTGAAGAAGATAGGAAGGCTCTTCAACTCTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGATTTGGTGCTCTTTACAG..............................................................................................................................................GGGATTTTGGGAATGAAAATGTGGATCTAGTCCGAAGCATAGCAGATCTAGAGATCACCAAAGCTGTTATTCTAGGGAACCATGACGCATGGAATACTCAAAAGTTCTCTGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAAGATGCTGTTCAACTTCAGCTGGAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGGTGATGAGCATGTTGGTTACCGTCGAATGGATCTCCCTATGCTAAAACTCAGTATTGTTGGTGGACGACCTTTTTCTTGTGGTGGTAGGCCCTTATTCCGGAAACAGCTTCTCAAAGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGAGTCCGTGATATGGATGGAAGTGCTGAGAGAATCTTACAAGCTGCCATGGGCACTCCAGAGGATCATTCAATTATATTCCTTGCTCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E200291" ref_strand="+" ref_description="SGN-E200291 [cLEC-12-H20]">
      <seq>tttagttgccctccgaaaatttgttggcaaacacgtatatatgttcaacggtagcacgttgttacacgcgccgactcaattccgtggcattacgggctctgtccgtcatccagcgccgtcaaaacttgtcgtcggtcacttcccgatggaatcttccgtccgaatcgttgtcgtcggcgacgtccatgatgattggaaccttgaagaagataggaaggctcttcaactcttgaagccagatttggtgctctttacaggggattttgggaatgaaaatgtggatctagtccgaagcatagcagatctagagatcaccaaagctgttattctagggaaccatgacgcatggaatactcaaaagttctctgggaaggaaaaagatgctgttcaacttcagctggaatgtcttggtgatgagcatgttggttaccgtcgaatggatctccctatgctaaaactcagtattgttggtggacgacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44202" stop="39662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43902" g_stop="43719" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43718" i_stop="43333" i_length="386">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43332" g_stop="43282" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="235" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43281" i_stop="41913" i_length="1369">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41912" g_stop="41891" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="257" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41890" i_stop="41749" i_length="142">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41748" g_stop="41634" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="372" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41633" i_stop="41143" i_length="491">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41142" g_stop="41110" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="405" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41109" i_stop="40041" i_length="1069">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40040" g_stop="39962" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="484" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E200291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43902" e_stop="43719"/>
          <exon e_start="43332" e_stop="43282"/>
          <exon e_start="41912" e_stop="41891"/>
          <exon e_start="41748" e_stop="41634"/>
          <exon e_start="41142" e_stop="41110"/>
          <exon e_start="40040" e_stop="39962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTGCCCTCCGAAAATTTGTTGGCAAACACGTATATATGTTCAACGGTAGCACGTTGTTACACGCGCCGACTCAATTCCGTGGCATTACGGGCTCTGTCCGTCATCCAGCGCCGTCAAAACTTGTCGTCGGTCACTTCCCGATGGAATCTTCCGTCCGAATCGTTGTCGTCGGCGACGTCGTAAGCTATCAATTTCATATCCTTCGATAATTTTAGCTCCGCATTTTCCTTCAAGCCTCATATAAGCGACTGTATAATATGCTTCAACATCTCTATAGTAACCTGAACTTTCTGAATTACTGCTAGCATTTTCCATGTGCTGCTGAAGTCTCCCGTTGAGTTTTTGAAGTTGCAATTTTTGGAATTTGAAGTTTTGTGAGACAATTCCTTGAAATATATCTGAAGATGAATTTCAAAAACTACTCCCCAAATCTATGCTCAAACACTAGCTAATAATGAAATTACTTCGTTTTTGTGATTTGAATTTGTTCAAATTGTACTAGCATATTTGTATGTGTTGACTTTGTGTTACTATCCTTTTTGTGGAAATGTTGGGGATTATGAAGCATGATGATTGGAACCTTGAAGAAGATAGGAAGGCTCTTCAACTCTTGAAGGTACTTGGCATCTTTATATTGTTTAATTTATTCTAATTTTCTTTTTGGGCTAGGATTATTGAGGTATTGTTTGTTGTGAATATGCTAGTTTCTACTAACCATTAAACTGTTGAAAAGCTAGTTTCTTTCTGGGGAAATTGTAGTTCACAAAATAATCCAGCCAAAGTAACAGAAATCAGATCTACTAACCATTAAATTGTTGAAGGATTGATATTGTTTCTCGGTTAATTAGCCAAATTTAGTACTTCAAGCTCACTTTGCATTGAACTTTGATTCTATTAGCTGTCAAATATGTGTCCAAATGGAGCTAGAAATTGGTTATAATCTCAATGGAAGCTCTCTGAATTGGATTAATTAACCAAAAAGGAAGTCAAACGTTCCTTAAATTTGACGCTTTTGACTGCCAATTGTTATTAGTCTTAACATGTAGACCAAGTATTGTAGTATGCATTAATAATTCGTGTTATGGAACATCGTCATATTTTTTGTGTACTCGCATAATGCTTTCTCGCAATGGCAAGTATTATCTTGTTTAATGGAACAGTTGCCATGCTAAAGCTGCATCTGAATAGCATAGCAGATTAAAAACATGTCCTGCATAGATGTTGCACAAGAGGATAGATGACTACAAATTATGAAGCCTTACGTATCTTGCTTTTGGGTCTTATTTTTCCCTTGCTCTTTGCCTCATTAAACTGAACCATAGCTGTATTTTGTTGTGTACCACTTAATTTTGTAAACTAATTGTGTCCCGCTCTGCTATTCTATGAAGGTATTTAGTTGGAAGGAATGTAAAGGTATCATGACTAACAAAATTAATTCATATGTTTATGAAACAAAAATAATTTGATCAAAATTGTGGAAAGTATCTTTCATACTTCATTCCTCTCTTTAGTGGATAATTAGCTATCGCTGCTAACTTTCTTTCTCTATGAGCAGTGGATATGCTTTGGATATGACTTATTCTACACACGTAATTGCAGTACAGTGTTCAAGAAATTTTGAGAAATGAAACTCTGAGAGTTGCTTCAGAGTTTCTTCTCCATCCCACTTTTTTGACATGGAAGAAATAATTTTTATCTGCCCATCTGTACTTTGTGTAGTTTTGAGGAATGATTTCTATTATTTTTCATAAAAATGTTATAGGCGTACAACGTAACCATAAGAGATCGTGAAATGCAAGTTTCATTATGAAAACTAATTTTAGAAACCAAACTTTTGGGAGGATCCCTAGTGTTTCCACTTTTTCTTTCTTTCTTGGGACAATGAAGACCTTCTCTGGCGAAATCCTTTTACTTTTCTTTTATAACATCTCTTGGTTCATTTCCTTCTGTCAGCTAACGATTTTTGTTGTTGTGAAAATTTGCAGCCAGATTTGGTGCTCTTTACAGGCATGTCTTCTAATTATCTCCCATCTATTTATCCAGAATGCATACTACATAGTTATTGTATTCTTTCAACTACTATTTTTCATTCACTAGCCAGGTTAGATTGGAAGAATCATCAGTTCACTTCATTTTGTCCTTGCTTCAGGGGATTTTGGGAATGAAAATGTGGATCTAGTCCGAAGCATAGCAGATCTAGAGATCACCAAAGCTGTTATTCTAGGGAACCATGACGCATGGAATACTCAAAAGTTCTCTGGGAAGTAAGTCCAAGTTCCATTTTATCTGACTGCTTAGAGGAAAAGATCACTTTCTCATTCATTTTCCATTATTTGTTGGAATCAAACTCTGGTAGATAGGGTGTTCGGATCAGTGTTGTGGCTTCATGAAGGTTGTTGTTGATGATGGCAAATGGGGTGATAACTGTGGTAGTGTGTGAGTAGGATTAATTAGCATTGATTTTGGTGGTAGAGCCCGTGGAAAATCATTGATAAATTTGAAGGATGTTTTCCTTGAAACATAACTTCCTCAGAAACTTTGATCATTAACTGTAAACATCTTTAGTGACTTGAAAATATGAAGTATCAAAAAAGGAAGAAGCATATTGTCAGGCTCGTTTTTTCCTGTCCACCTAGTTGGCATGTCTGATGTCTCAACAAATTATTTTTCTCTAATTGTGAGATGTACTACCTCGTAACTAGTTTTTTGAATTCATACACTTCTTTTTTCTTAGCGTGTGCTGTTCAATTTGTAGGGAAAAAGATGCTGTTCAACTTCAGCTGGAATGGTATGTCTTCCGAGATATATAATTATTTAGTTTCAATAAAACTATACATCTATATGTGTTAAATAGCATAGCTATGTGCTTATTTATGATGTTTAGGACTGTCAGTTTCTCACTCTGGCATGACCTTCCATCTTGTGTTCCTCACAATCTCAATACCACTTTGTCTCAGAAGTAAGGAAGATAGATGATAAGATAGGTCATTGCTTGATAGAAAATAAATCGCCAGGATCCAGAAAGGTCCTCTTGGTACATCTGTTAGTAGTTGGACTATGTACATCCAACACATGTAAGTAGGTTATGGAAAAAGAAAAGATCACGCAACAGAAACATGTGCATATCTGCACATCTGGAAAATATTTGCTGCTAAAAGTGAAGATAGCAATATAATAATGAAGAATGGGAACTCTTTTGGCTGGGCAATTATCCACAAGCTTAACTTTCCACAATGAGCACTTAAAAAGTTTATTTAAATTTGGCAAATTATAGATTTATTCACCACAAGTAATCTGAACTAAGTCGTAAAATCTGTGTTCGCTGAATGAGTCTTTCTCGGCATCAAGGAGTCATGGTTGATTTAACCCCAGACCAGTGAAAGATTGATTCTGAGATTCTGGCTCATGTTGCAAAGATTTCCCTTAAAATTCAACTATCCGGCATACAAATTTGTCTGATGGTTCAATTCTTTCGATTATGATATTTTATCTTGGAAAGTATTAGGGCTTCAACTACTAAACTACCTTGTATAGTATACAATTTTACTTATCATAATTGAGGGGAAAACAAAGACTAAGATTGATTTTTAAGCTAGGTCATAACCAAAGAAAAATCATGATATAACATCAGTTCATATCCATATTCTGAAGGACAATTTCTTTTCTTTTTTTTTAACTTTTCCTTGTTATTTTCTTGAATAAAGAGCTAAATACCAGAAAAATGAATCAGACAGCTAAGTCCTTCCCATAATAAAGGATTTCTGTCTTGACCTATTTTATGTCCCATTTTATATAATAAAAGGAAAAGTAACTTATACCATAAAATCTTGTTGGCGTGATGACAATTTATGTGTCAGTCTTGGTGATGAGCATGTTGGTTACCGTCGAATGGATCTCCCTATGCTAAAACTCAGTATTGTTGGTGGACGACCTTTT</genome_strand>
        <mrna_strand>TTTAGTTGCCCTCCGAAAATTTGTTGGCAAACACGTATATATGTTCAACGGTAGCACGTTGTTACACGCGCCGACTCAATTCCGTGGCATTACGGGCTCTGTCCGTCATCCAGCGCCGTCAAAACTTGTCGTCGGTCACTTCCCGATGGAATCTTCCGTCCGAATCGTTGTCGTCGGCGACGTC..................................................................................................................................................................................................................................................................................................................................................................................................CATGATGATTGGAACCTTGAAGAAGATAGGAAGGCTCTTCAACTCTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGATTTGGTGCTCTTTACAG..............................................................................................................................................GGGATTTTGGGAATGAAAATGTGGATCTAGTCCGAAGCATAGCAGATCTAGAGATCACCAAAGCTGTTATTCTAGGGAACCATGACGCATGGAATACTCAAAAGTTCTCTGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAAGATGCTGTTCAACTTCAGCTGGAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGGTGATGAGCATGTTGGTTACCGTCGAATGGATCTCCCTATGCTAAAACTCAGTATTGTTGGTGGACGACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E318120" ref_strand="+" ref_description="SGN-E318120 [cTOA-29-P23]">
      <seq>ggcattacgggctctgtccgtcatccagcgccgtcaaaacttgtcgtcggtcacttcccgatggaatcttccgtccgaatcgttgtcgtcggcgacgtccatgatgattggaaccttgaagaagataggaaggctcttcaactcttgaagccagatttggtgctctttacaggggattttgggaatgaaaatgtggatctagtccgaagcatagcagatctagagatcaccaaagctgttattctagggaaccatgacgcatggaatactcaaaagttctctgggaaggagaaagatgctgttcaacttcagctggaatgtcttggtgatgagcatgttggttaccgtcgaatggatctccctatgctaaaactcagtattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44117" stop="39676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43817" g_stop="43719" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43718" i_stop="43333" i_length="386">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43332" g_stop="43282" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="150" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43281" i_stop="41913" i_length="1369">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41912" g_stop="41891" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="172" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41890" i_stop="41749" i_length="142">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41748" g_stop="41634" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="287" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41633" i_stop="41143" i_length="491">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41142" g_stop="41110" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="320" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41109" i_stop="40041" i_length="1069">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40040" g_stop="39976" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="385" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E318120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43817" e_stop="43719"/>
          <exon e_start="43332" e_stop="43282"/>
          <exon e_start="41912" e_stop="41891"/>
          <exon e_start="41748" e_stop="41634"/>
          <exon e_start="41142" e_stop="41110"/>
          <exon e_start="40040" e_stop="39976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTACGGGCTCTGTCCGTCATCCAGCGCCGTCAAAACTTGTCGTCGGTCACTTCCCGATGGAATCTTCCGTCCGAATCGTTGTCGTCGGCGACGTCGTAAGCTATCAATTTCATATCCTTCGATAATTTTAGCTCCGCATTTTCCTTCAAGCCTCATATAAGCGACTGTATAATATGCTTCAACATCTCTATAGTAACCTGAACTTTCTGAATTACTGCTAGCATTTTCCATGTGCTGCTGAAGTCTCCCGTTGAGTTTTTGAAGTTGCAATTTTTGGAATTTGAAGTTTTGTGAGACAATTCCTTGAAATATATCTGAAGATGAATTTCAAAAACTACTCCCCAAATCTATGCTCAAACACTAGCTAATAATGAAATTACTTCGTTTTTGTGATTTGAATTTGTTCAAATTGTACTAGCATATTTGTATGTGTTGACTTTGTGTTACTATCCTTTTTGTGGAAATGTTGGGGATTATGAAGCATGATGATTGGAACCTTGAAGAAGATAGGAAGGCTCTTCAACTCTTGAAGGTACTTGGCATCTTTATATTGTTTAATTTATTCTAATTTTCTTTTTGGGCTAGGATTATTGAGGTATTGTTTGTTGTGAATATGCTAGTTTCTACTAACCATTAAACTGTTGAAAAGCTAGTTTCTTTCTGGGGAAATTGTAGTTCACAAAATAATCCAGCCAAAGTAACAGAAATCAGATCTACTAACCATTAAATTGTTGAAGGATTGATATTGTTTCTCGGTTAATTAGCCAAATTTAGTACTTCAAGCTCACTTTGCATTGAACTTTGATTCTATTAGCTGTCAAATATGTGTCCAAATGGAGCTAGAAATTGGTTATAATCTCAATGGAAGCTCTCTGAATTGGATTAATTAACCAAAAAGGAAGTCAAACGTTCCTTAAATTTGACGCTTTTGACTGCCAATTGTTATTAGTCTTAACATGTAGACCAAGTATTGTAGTATGCATTAATAATTCGTGTTATGGAACATCGTCATATTTTTTGTGTACTCGCATAATGCTTTCTCGCAATGGCAAGTATTATCTTGTTTAATGGAACAGTTGCCATGCTAAAGCTGCATCTGAATAGCATAGCAGATTAAAAACATGTCCTGCATAGATGTTGCACAAGAGGATAGATGACTACAAATTATGAAGCCTTACGTATCTTGCTTTTGGGTCTTATTTTTCCCTTGCTCTTTGCCTCATTAAACTGAACCATAGCTGTATTTTGTTGTGTACCACTTAATTTTGTAAACTAATTGTGTCCCGCTCTGCTATTCTATGAAGGTATTTAGTTGGAAGGAATGTAAAGGTATCATGACTAACAAAATTAATTCATATGTTTATGAAACAAAAATAATTTGATCAAAATTGTGGAAAGTATCTTTCATACTTCATTCCTCTCTTTAGTGGATAATTAGCTATCGCTGCTAACTTTCTTTCTCTATGAGCAGTGGATATGCTTTGGATATGACTTATTCTACACACGTAATTGCAGTACAGTGTTCAAGAAATTTTGAGAAATGAAACTCTGAGAGTTGCTTCAGAGTTTCTTCTCCATCCCACTTTTTTGACATGGAAGAAATAATTTTTATCTGCCCATCTGTACTTTGTGTAGTTTTGAGGAATGATTTCTATTATTTTTCATAAAAATGTTATAGGCGTACAACGTAACCATAAGAGATCGTGAAATGCAAGTTTCATTATGAAAACTAATTTTAGAAACCAAACTTTTGGGAGGATCCCTAGTGTTTCCACTTTTTCTTTCTTTCTTGGGACAATGAAGACCTTCTCTGGCGAAATCCTTTTACTTTTCTTTTATAACATCTCTTGGTTCATTTCCTTCTGTCAGCTAACGATTTTTGTTGTTGTGAAAATTTGCAGCCAGATTTGGTGCTCTTTACAGGCATGTCTTCTAATTATCTCCCATCTATTTATCCAGAATGCATACTACATAGTTATTGTATTCTTTCAACTACTATTTTTCATTCACTAGCCAGGTTAGATTGGAAGAATCATCAGTTCACTTCATTTTGTCCTTGCTTCAGGGGATTTTGGGAATGAAAATGTGGATCTAGTCCGAAGCATAGCAGATCTAGAGATCACCAAAGCTGTTATTCTAGGGAACCATGACGCATGGAATACTCAAAAGTTCTCTGGGAAGTAAGTCCAAGTTCCATTTTATCTGACTGCTTAGAGGAAAAGATCACTTTCTCATTCATTTTCCATTATTTGTTGGAATCAAACTCTGGTAGATAGGGTGTTCGGATCAGTGTTGTGGCTTCATGAAGGTTGTTGTTGATGATGGCAAATGGGGTGATAACTGTGGTAGTGTGTGAGTAGGATTAATTAGCATTGATTTTGGTGGTAGAGCCCGTGGAAAATCATTGATAAATTTGAAGGATGTTTTCCTTGAAACATAACTTCCTCAGAAACTTTGATCATTAACTGTAAACATCTTTAGTGACTTGAAAATATGAAGTATCAAAAAAGGAAGAAGCATATTGTCAGGCTCGTTTTTTCCTGTCCACCTAGTTGGCATGTCTGATGTCTCAACAAATTATTTTTCTCTAATTGTGAGATGTACTACCTCGTAACTAGTTTTTTGAATTCATACACTTCTTTTTTCTTAGCGTGTGCTGTTCAATTTGTAGGGAAAAAGATGCTGTTCAACTTCAGCTGGAATGGTATGTCTTCCGAGATATATAATTATTTAGTTTCAATAAAACTATACATCTATATGTGTTAAATAGCATAGCTATGTGCTTATTTATGATGTTTAGGACTGTCAGTTTCTCACTCTGGCATGACCTTCCATCTTGTGTTCCTCACAATCTCAATACCACTTTGTCTCAGAAGTAAGGAAGATAGATGATAAGATAGGTCATTGCTTGATAGAAAATAAATCGCCAGGATCCAGAAAGGTCCTCTTGGTACATCTGTTAGTAGTTGGACTATGTACATCCAACACATGTAAGTAGGTTATGGAAAAAGAAAAGATCACGCAACAGAAACATGTGCATATCTGCACATCTGGAAAATATTTGCTGCTAAAAGTGAAGATAGCAATATAATAATGAAGAATGGGAACTCTTTTGGCTGGGCAATTATCCACAAGCTTAACTTTCCACAATGAGCACTTAAAAAGTTTATTTAAATTTGGCAAATTATAGATTTATTCACCACAAGTAATCTGAACTAAGTCGTAAAATCTGTGTTCGCTGAATGAGTCTTTCTCGGCATCAAGGAGTCATGGTTGATTTAACCCCAGACCAGTGAAAGATTGATTCTGAGATTCTGGCTCATGTTGCAAAGATTTCCCTTAAAATTCAACTATCCGGCATACAAATTTGTCTGATGGTTCAATTCTTTCGATTATGATATTTTATCTTGGAAAGTATTAGGGCTTCAACTACTAAACTACCTTGTATAGTATACAATTTTACTTATCATAATTGAGGGGAAAACAAAGACTAAGATTGATTTTTAAGCTAGGTCATAACCAAAGAAAAATCATGATATAACATCAGTTCATATCCATATTCTGAAGGACAATTTCTTTTCTTTTTTTTTAACTTTTCCTTGTTATTTTCTTGAATAAAGAGCTAAATACCAGAAAAATGAATCAGACAGCTAAGTCCTTCCCATAATAAAGGATTTCTGTCTTGACCTATTTTATGTCCCATTTTATATAATAAAAGGAAAAGTAACTTATACCATAAAATCTTGTTGGCGTGATGACAATTTATGTGTCAGTCTTGGTGATGAGCATGTTGGTTACCGTCGAATGGATCTCCCTATGCTAAAACTCAGTATTGTTG</genome_strand>
        <mrna_strand>GGCATTACGGGCTCTGTCCGTCATCCAGCGCCGTCAAAACTTGTCGTCGGTCACTTCCCGATGGAATCTTCCGTCCGAATCGTTGTCGTCGGCGACGTC..................................................................................................................................................................................................................................................................................................................................................................................................CATGATGATTGGAACCTTGAAGAAGATAGGAAGGCTCTTCAACTCTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGATTTGGTGCTCTTTACAG..............................................................................................................................................GGGATTTTGGGAATGAAAATGTGGATCTAGTCCGAAGCATAGCAGATCTAGAGATCACCAAAGCTGTTATTCTAGGGAACCATGACGCATGGAATACTCAAAAGTTCTCTGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAAGATGCTGTTCAACTTCAGCTGGAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGGTGATGAGCATGTTGGTTACCGTCGAATGGATCTCCCTATGCTAAAACTCAGTATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E270364" ref_strand="+" ref_description="SGN-E270364 [cLEM-1-M20]">
      <seq>ttacacgcgccgactcaattccggggcattacgggctctgtccgtcatccaccgccgtcaaaacttgtcgtcggtcactttccgatggaatgttccgtccgaatcgttgacgacggcgacgttcatgatgattggaaccttgaacaagataggaaggctctatctcttaccaatcctttaaccccctggaagccagatttggtgctctttacaggggattttgggaatgaaaatgtggatctaggccgaaacatatcatatctagacatcaccagaagctgatattctacggaaccatgacgcatggaatactcaaaagttctccgggaaggaaaaagatgctgttcaactatagctggaatgtcttggtgatgagcatgtgggattaccgggaatggatctccctatgctaaaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44141" stop="39685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43841" g_stop="43719" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43718" i_stop="43333" i_length="386">
            <donor d_prob="0.922" d_score="0.90"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43332" g_stop="43300" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="156" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43299" i_stop="42510" i_length="790">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.695" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42509" g_stop="42503" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="162" r_length="6" r_score="0.571"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42502" i_stop="42136" i_length="367">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42135" g_stop="42104" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="192" r_length="30" r_score="0.469"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42103" i_stop="41913" i_length="191">
            <donor d_prob="0.339" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41912" g_stop="41891" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="214" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41890" i_stop="41749" i_length="142">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41748" g_stop="41634" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="330" r_length="116" r_score="0.913"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41633" i_stop="41143" i_length="491">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41142" g_stop="41110" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="363" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41109" i_stop="40041" i_length="1069">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.810" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40040" g_stop="39985" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="419" r_length="56" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E270364" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43841" e_stop="43719"/>
          <exon e_start="43332" e_stop="43300"/>
          <exon e_start="42509" e_stop="42503"/>
          <exon e_start="42135" e_stop="42104"/>
          <exon e_start="41912" e_stop="41891"/>
          <exon e_start="41748" e_stop="41634"/>
          <exon e_start="41142" e_stop="41110"/>
          <exon e_start="40040" e_stop="39985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACGCGCCGACTCAATTCCGTGGCATTACGGGCTCTGTCCGTCATCCAGCGCCGTCAAAACTTGTCGTCGGTCACTTCCCGATGGAATCTTCCGTCCGAATCGTTGTCGTCGGCGACGTCGTAAGCTATCAATTTCATATCCTTCGATAATTTTAGCTCCGCATTTTCCTTCAAGCCTCATATAAGCGACTGTATAATATGCTTCAACATCTCTATAGTAACCTGAACTTTCTGAATTACTGCTAGCATTTTCCATGTGCTGCTGAAGTCTCCCGTTGAGTTTTTGAAGTTGCAATTTTTGGAATTTGAAGTTTTGTGAGACAATTCCTTGAAATATATCTGAAGATGAATTTCAAAAACTACTCCCCAAATCTATGCTCAAACACTAGCTAATAATGAAATTACTTCGTTTTTGTGATTTGAATTTGTTCAAATTGTACTAGCATATTTGTATGTGTTGACTTTGTGTTACTATCCTTTTTGTGGAAATGTTGGGGATTATGAAGCATGATGATTGGAACCTTGAAGAAGATAGGAAGGCTCTTCAACTCTTGAAGGTACTTGGCATCTTTATATTGTTTAATTTATTCTAATTTTCTTTTTGGGCTAGGATTATTGAGGTATTGTTTGTTGTGAATATGCTAGTTTCTACTAACCATTAAACTGTTGAAAAGCTAGTTTCTTTCTGGGGAAATTGTAGTTCACAAAATAATCCAGCCAAAGTAACAGAAATCAGATCTACTAACCATTAAATTGTTGAAGGATTGATATTGTTTCTCGGTTAATTAGCCAAATTTAGTACTTCAAGCTCACTTTGCATTGAACTTTGATTCTATTAGCTGTCAAATATGTGTCCAAATGGAGCTAGAAATTGGTTATAATCTCAATGGAAGCTCTCTGAATTGGATTAATTAACCAAAAAGGAAGTCAAACGTTCCTTAAATTTGACGCTTTTGACTGCCAATTGTTATTAGTCTTAACATGTAGACCAAGTATTGTAGTATGCATTAATAATTCGTGTTATGGAACATCGTCATATTTTTTGTGTACTCGCATAATGCTTTCTCGCAATGGCAAGTATTATCTTGTTTAATGGAACAGTTGCCATGCTAAAGCTGCATCTGAATAGCATAGCAGATTAAAAACATGTCCTGCATAGATGTTGCACAAGAGGATAGATGACTACAAATTATGAAGCCTTACGTATCTTGCTTTTGGGTCTTATTTTTCCCTTGCTCTTTGCCTCATTAAACTGAACCATAGCTGTATTTTGTTGTGTACCACTTAATTTTGTAAACTAATTGTGTCCCGCTCTGCTATTCTATGAAGGTATTTAGTTGGAAGGAATGTAAAGGTATCATGACTAACAAAATTAATTCATATGTTTATGAAACAAAAATAATTTGATCAAAATTGTGGAAAGTATCTTTCATACTTCATTCCTCTCTTTAGTGGATAATTAGCTATCGCTGCTAACTTTCTTTCTCTATGAGCAGTGGATATGCTTTGGATATGACTTATTCTACACACGTAATTGCAGTACAGTGTTCAAGAAATTTTGAGAAATGAAACTCTGAGAGTTGCTTCAGAGTTTCTTCTCCATCCCACTTTTTTGACATGGAAGAAATAATTTTTATCTGCCCATCTGTACTTTGTGTAGTTTTGAGGAATGATTTCTATTATTTTTCATAAAAATGTTATAGGCGTACAACGTAACCATAAGAGATCGTGAAATGCAAGTTTCATTATGAAAACTAATTTTAGAAACCAAACTTTTGGGAGGATCCCTAGTGTTTCCACTTTTTCTTTCTTTCTTGGGACAATGAAGACCTTCTCTGGCGAAATCCTTTTACTTTTCTTTTATAACATCTCTTGGTTCATTTCCTTCTGTCAGCTAACGATTTTTGTTGTTGTGAAAATTTGCAGCCAGATTTGGTGCTCTTTACAGGCATGTCTTCTAATTATCTCCCATCTATTTATCCAGAATGCATACTACATAGTTATTGTATTCTTTCAACTACTATTTTTCATTCACTAGCCAGGTTAGATTGGAAGAATCATCAGTTCACTTCATTTTGTCCTTGCTTCAGGGGATTTTGGGAATGAAAATGTGGATCTAGTCCGAAGCATAGCAGATCTAGAGATCACCA-AAGCTGTTATTCTAGGGAACCATGACGCATGGAATACTCAAAAGTTCTCTGGGAAGTAAGTCCAAGTTCCATTTTATCTGACTGCTTAGAGGAAAAGATCACTTTCTCATTCATTTTCCATTATTTGTTGGAATCAAACTCTGGTAGATAGGGTGTTCGGATCAGTGTTGTGGCTTCATGAAGGTTGTTGTTGATGATGGCAAATGGGGTGATAACTGTGGTAGTGTGTGAGTAGGATTAATTAGCATTGATTTTGGTGGTAGAGCCCGTGGAAAATCATTGATAAATTTGAAGGATGTTTTCCTTGAAACATAACTTCCTCAGAAACTTTGATCATTAACTGTAAACATCTTTAGTGACTTGAAAATATGAAGTATCAAAAAAGGAAGAAGCATATTGTCAGGCTCGTTTTTTCCTGTCCACCTAGTTGGCATGTCTGATGTCTCAACAAATTATTTTTCTCTAATTGTGAGATGTACTACCTCGTAACTAGTTTTTTGAATTCATACACTTCTTTTTTCTTAGCGTGTGCTGTTCAATTTGTAGGGAAAAAGATGCTGTTCAACTTCAGCTGGAATGGTATGTCTTCCGAGATATATAATTATTTAGTTTCAATAAAACTATACATCTATATGTGTTAAATAGCATAGCTATGTGCTTATTTATGATGTTTAGGACTGTCAGTTTCTCACTCTGGCATGACCTTCCATCTTGTGTTCCTCACAATCTCAATACCACTTTGTCTCAGAAGTAAGGAAGATAGATGATAAGATAGGTCATTGCTTGATAGAAAATAAATCGCCAGGATCCAGAAAGGTCCTCTTGGTACATCTGTTAGTAGTTGGACTATGTACATCCAACACATGTAAGTAGGTTATGGAAAAAGAAAAGATCACGCAACAGAAACATGTGCATATCTGCACATCTGGAAAATATTTGCTGCTAAAAGTGAAGATAGCAATATAATAATGAAGAATGGGAACTCTTTTGGCTGGGCAATTATCCACAAGCTTAACTTTCCACAATGAGCACTTAAAAAGTTTATTTAAATTTGGCAAATTATAGATTTATTCACCACAAGTAATCTGAACTAAGTCGTAAAATCTGTGTTCGCTGAATGAGTCTTTCTCGGCATCAAGGAGTCATGGTTGATTTAACCCCAGACCAGTGAAAGATTGATTCTGAGATTCTGGCTCATGTTGCAAAGATTTCCCTTAAAATTCAACTATCCGGCATACAAATTTGTCTGATGGTTCAATTCTTTCGATTATGATATTTTATCTTGGAAAGTATTAGGGCTTCAACTACTAAACTACCTTGTATAGTATACAATTTTACTTATCATAATTGAGGGGAAAACAAAGACTAAGATTGATTTTTAAGCTAGGTCATAACCAAAGAAAAATCATGATATAACATCAGTTCATATCCATATTCTGAAGGACAATTTCTTTTCTTTTTTTTTAACTTTTCCTTGTTATTTTCTTGAATAAAGAGCTAAATACCAGAAAAATGAATCAGACAGCTAAGTCCTTCCCATAATAAAGGATTTCTGTCTTGACCTATTTTATGTCCCATTTTATATAATAAAAGGAAAAGTAACTTATACCATAAAATCTTGTTGGCGTGATGACAATTTATGTGTCAGTCTTGGTGATGAGCATGTTGG-TTACCGTCGAATGGATCTCCCTATGCTAAAACTCA</genome_strand>
        <mrna_strand>TTACACGCGCCGACTCAATTCCGGGGCATTACGGGCTCTGTCCGTCATCCACCGCCGTCAAAACTTGTCGTCGGTCACTTTCCGATGGAATGTTCCGTCCGAATCGTTGACGACGGCGACGTT..................................................................................................................................................................................................................................................................................................................................................................................................CATGATGATTGGAACCTTGAACAAGATAGGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CTCTA...............................................................................................................................................................................................................................................................................................................................................................................TC-TCTTACCAATCCTTTA-ACCCCCTGGAAG...............................................................................................................................................................................................CCAGATTTGGTGCTCTTTACAG..............................................................................................................................................GGGATTTTGGGAATGAAAATGTGGATCTAGGCCGAAACATATCATATCTAGACATCACCAGAAGCTGATATTCTACGGAACCATGACGCATGGAATACTCAAAAGTTCTCCGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAAGATGCTGTTCAACTATAGCTGGAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGGTGATGAGCATGTGGGATTACCG-GGAATGGATCTCCCTATGCTAAAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E275100" ref_strand="+" ref_description="SGN-E275100 [cLEN-9-E12]">
      <seq>tttaattgccctccgaaaatttgttggcaaacacgtatatatgttcaacggtagcacgttgttacacgcgccgactcaattccgtggcattacgggctctgtccgtcatacagcgccgacaaaacttgacgtcggtcacttcccgatggaatcttccgtccgaatcgttgtcgtcggcgacgtccatgatgattggaaccttgaagaagataggaaggctcttcaactcttgaagccagatttggtgctctttacaggggattttgggaatgaaaatgtggatctagtccgaagcatagcagatctagagatcaccaaagctgtgattctaaggaaccatgacgcatggaatactcaaaagctctctgggaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44202" stop="41330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43902" g_stop="43719" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43718" i_stop="43333" i_length="386">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43332" g_stop="43282" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="235" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43281" i_stop="41913" i_length="1369">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41912" g_stop="41891" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="257" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41890" i_stop="41749" i_length="142">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41748" g_stop="41634" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="372" r_length="115" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E275100" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43902" e_stop="43719"/>
          <exon e_start="43332" e_stop="43282"/>
          <exon e_start="41912" e_stop="41891"/>
          <exon e_start="41748" e_stop="41634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTGCCCTCCGAAAATTTGTTGGCAAACACGTATATATGTTCAACGGTAGCACGTTGTTACACGCGCCGACTCAATTCCGTGGCATTACGGGCTCTGTCCGTCATCCAGCGCCGTCAAAACTTGTCGTCGGTCACTTCCCGATGGAATCTTCCGTCCGAATCGTTGTCGTCGGCGACGTCGTAAGCTATCAATTTCATATCCTTCGATAATTTTAGCTCCGCATTTTCCTTCAAGCCTCATATAAGCGACTGTATAATATGCTTCAACATCTCTATAGTAACCTGAACTTTCTGAATTACTGCTAGCATTTTCCATGTGCTGCTGAAGTCTCCCGTTGAGTTTTTGAAGTTGCAATTTTTGGAATTTGAAGTTTTGTGAGACAATTCCTTGAAATATATCTGAAGATGAATTTCAAAAACTACTCCCCAAATCTATGCTCAAACACTAGCTAATAATGAAATTACTTCGTTTTTGTGATTTGAATTTGTTCAAATTGTACTAGCATATTTGTATGTGTTGACTTTGTGTTACTATCCTTTTTGTGGAAATGTTGGGGATTATGAAGCATGATGATTGGAACCTTGAAGAAGATAGGAAGGCTCTTCAACTCTTGAAGGTACTTGGCATCTTTATATTGTTTAATTTATTCTAATTTTCTTTTTGGGCTAGGATTATTGAGGTATTGTTTGTTGTGAATATGCTAGTTTCTACTAACCATTAAACTGTTGAAAAGCTAGTTTCTTTCTGGGGAAATTGTAGTTCACAAAATAATCCAGCCAAAGTAACAGAAATCAGATCTACTAACCATTAAATTGTTGAAGGATTGATATTGTTTCTCGGTTAATTAGCCAAATTTAGTACTTCAAGCTCACTTTGCATTGAACTTTGATTCTATTAGCTGTCAAATATGTGTCCAAATGGAGCTAGAAATTGGTTATAATCTCAATGGAAGCTCTCTGAATTGGATTAATTAACCAAAAAGGAAGTCAAACGTTCCTTAAATTTGACGCTTTTGACTGCCAATTGTTATTAGTCTTAACATGTAGACCAAGTATTGTAGTATGCATTAATAATTCGTGTTATGGAACATCGTCATATTTTTTGTGTACTCGCATAATGCTTTCTCGCAATGGCAAGTATTATCTTGTTTAATGGAACAGTTGCCATGCTAAAGCTGCATCTGAATAGCATAGCAGATTAAAAACATGTCCTGCATAGATGTTGCACAAGAGGATAGATGACTACAAATTATGAAGCCTTACGTATCTTGCTTTTGGGTCTTATTTTTCCCTTGCTCTTTGCCTCATTAAACTGAACCATAGCTGTATTTTGTTGTGTACCACTTAATTTTGTAAACTAATTGTGTCCCGCTCTGCTATTCTATGAAGGTATTTAGTTGGAAGGAATGTAAAGGTATCATGACTAACAAAATTAATTCATATGTTTATGAAACAAAAATAATTTGATCAAAATTGTGGAAAGTATCTTTCATACTTCATTCCTCTCTTTAGTGGATAATTAGCTATCGCTGCTAACTTTCTTTCTCTATGAGCAGTGGATATGCTTTGGATATGACTTATTCTACACACGTAATTGCAGTACAGTGTTCAAGAAATTTTGAGAAATGAAACTCTGAGAGTTGCTTCAGAGTTTCTTCTCCATCCCACTTTTTTGACATGGAAGAAATAATTTTTATCTGCCCATCTGTACTTTGTGTAGTTTTGAGGAATGATTTCTATTATTTTTCATAAAAATGTTATAGGCGTACAACGTAACCATAAGAGATCGTGAAATGCAAGTTTCATTATGAAAACTAATTTTAGAAACCAAACTTTTGGGAGGATCCCTAGTGTTTCCACTTTTTCTTTCTTTCTTGGGACAATGAAGACCTTCTCTGGCGAAATCCTTTTACTTTTCTTTTATAACATCTCTTGGTTCATTTCCTTCTGTCAGCTAACGATTTTTGTTGTTGTGAAAATTTGCAGCCAGATTTGGTGCTCTTTACAGGCATGTCTTCTAATTATCTCCCATCTATTTATCCAGAATGCATACTACATAGTTATTGTATTCTTTCAACTACTATTTTTCATTCACTAGCCAGGTTAGATTGGAAGAATCATCAGTTCACTTCATTTTGTCCTTGCTTCAGGGGATTTTGGGAATGAAAATGTGGATCTAGTCCGAAGCATAGCAGATCTAGAGATCACCAAAGCTGTTATTCTAGGGAACCATGACGCATGGAATACTCAAAAGTTCTCTGGGAA</genome_strand>
        <mrna_strand>TTTAATTGCCCTCCGAAAATTTGTTGGCAAACACGTATATATGTTCAACGGTAGCACGTTGTTACACGCGCCGACTCAATTCCGTGGCATTACGGGCTCTGTCCGTCATACAGCGCCGACAAAACTTGACGTCGGTCACTTCCCGATGGAATCTTCCGTCCGAATCGTTGTCGTCGGCGACGTC..................................................................................................................................................................................................................................................................................................................................................................................................CATGATGATTGGAACCTTGAAGAAGATAGGAAGGCTCTTCAACTCTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGATTTGGTGCTCTTTACAG..............................................................................................................................................GGGATTTTGGGAATGAAAATGTGGATCTAGTCCGAAGCATAGCAGATCTAGAGATCACCAAAGCTGTGATTCTAAGGAACCATGACGCATGGAATACTCAAAAGCTCTCTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E200758" ref_strand="+" ref_description="SGN-E200758 [cLEC-9-A18]">
      <seq>tcaacggtagcacgttgttacacgcgccgactcaattccgtggcattacgggctctgtccgtcatccagcgccgtcaaaacttgtcgtcggtcacttcccgatggaatcttccgtccgaatcgttgtcgtcggcgacgtccatgatgattggaaccttgaagaagataggaaggctcttcaactcttgaagccagatttggtgctctttacaggggattttgggaatgaaaatgtggatctagtccgaagcatagcagatctagagatcaccaaagctgttattctagggaaccatgacgcatggaatactcaaaagttctctgggaaggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44158" stop="41330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43858" g_stop="43719" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43718" i_stop="43333" i_length="386">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43332" g_stop="43282" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="191" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43281" i_stop="41913" i_length="1369">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41912" g_stop="41891" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="213" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41890" i_stop="41749" i_length="142">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41748" g_stop="41634" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="328" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E200758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43858" e_stop="43719"/>
          <exon e_start="43332" e_stop="43282"/>
          <exon e_start="41912" e_stop="41891"/>
          <exon e_start="41748" e_stop="41634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACGGTAGCACGTTGTTACACGCGCCGACTCAATTCCGTGGCATTACGGGCTCTGTCCGTCATCCAGCGCCGTCAAAACTTGTCGTCGGTCACTTCCCGATGGAATCTTCCGTCCGAATCGTTGTCGTCGGCGACGTCGTAAGCTATCAATTTCATATCCTTCGATAATTTTAGCTCCGCATTTTCCTTCAAGCCTCATATAAGCGACTGTATAATATGCTTCAACATCTCTATAGTAACCTGAACTTTCTGAATTACTGCTAGCATTTTCCATGTGCTGCTGAAGTCTCCCGTTGAGTTTTTGAAGTTGCAATTTTTGGAATTTGAAGTTTTGTGAGACAATTCCTTGAAATATATCTGAAGATGAATTTCAAAAACTACTCCCCAAATCTATGCTCAAACACTAGCTAATAATGAAATTACTTCGTTTTTGTGATTTGAATTTGTTCAAATTGTACTAGCATATTTGTATGTGTTGACTTTGTGTTACTATCCTTTTTGTGGAAATGTTGGGGATTATGAAGCATGATGATTGGAACCTTGAAGAAGATAGGAAGGCTCTTCAACTCTTGAAGGTACTTGGCATCTTTATATTGTTTAATTTATTCTAATTTTCTTTTTGGGCTAGGATTATTGAGGTATTGTTTGTTGTGAATATGCTAGTTTCTACTAACCATTAAACTGTTGAAAAGCTAGTTTCTTTCTGGGGAAATTGTAGTTCACAAAATAATCCAGCCAAAGTAACAGAAATCAGATCTACTAACCATTAAATTGTTGAAGGATTGATATTGTTTCTCGGTTAATTAGCCAAATTTAGTACTTCAAGCTCACTTTGCATTGAACTTTGATTCTATTAGCTGTCAAATATGTGTCCAAATGGAGCTAGAAATTGGTTATAATCTCAATGGAAGCTCTCTGAATTGGATTAATTAACCAAAAAGGAAGTCAAACGTTCCTTAAATTTGACGCTTTTGACTGCCAATTGTTATTAGTCTTAACATGTAGACCAAGTATTGTAGTATGCATTAATAATTCGTGTTATGGAACATCGTCATATTTTTTGTGTACTCGCATAATGCTTTCTCGCAATGGCAAGTATTATCTTGTTTAATGGAACAGTTGCCATGCTAAAGCTGCATCTGAATAGCATAGCAGATTAAAAACATGTCCTGCATAGATGTTGCACAAGAGGATAGATGACTACAAATTATGAAGCCTTACGTATCTTGCTTTTGGGTCTTATTTTTCCCTTGCTCTTTGCCTCATTAAACTGAACCATAGCTGTATTTTGTTGTGTACCACTTAATTTTGTAAACTAATTGTGTCCCGCTCTGCTATTCTATGAAGGTATTTAGTTGGAAGGAATGTAAAGGTATCATGACTAACAAAATTAATTCATATGTTTATGAAACAAAAATAATTTGATCAAAATTGTGGAAAGTATCTTTCATACTTCATTCCTCTCTTTAGTGGATAATTAGCTATCGCTGCTAACTTTCTTTCTCTATGAGCAGTGGATATGCTTTGGATATGACTTATTCTACACACGTAATTGCAGTACAGTGTTCAAGAAATTTTGAGAAATGAAACTCTGAGAGTTGCTTCAGAGTTTCTTCTCCATCCCACTTTTTTGACATGGAAGAAATAATTTTTATCTGCCCATCTGTACTTTGTGTAGTTTTGAGGAATGATTTCTATTATTTTTCATAAAAATGTTATAGGCGTACAACGTAACCATAAGAGATCGTGAAATGCAAGTTTCATTATGAAAACTAATTTTAGAAACCAAACTTTTGGGAGGATCCCTAGTGTTTCCACTTTTTCTTTCTTTCTTGGGACAATGAAGACCTTCTCTGGCGAAATCCTTTTACTTTTCTTTTATAACATCTCTTGGTTCATTTCCTTCTGTCAGCTAACGATTTTTGTTGTTGTGAAAATTTGCAGCCAGATTTGGTGCTCTTTACAGGCATGTCTTCTAATTATCTCCCATCTATTTATCCAGAATGCATACTACATAGTTATTGTATTCTTTCAACTACTATTTTTCATTCACTAGCCAGGTTAGATTGGAAGAATCATCAGTTCACTTCATTTTGTCCTTGCTTCAGGGGATTTTGGGAATGAAAATGTGGATCTAGTCCGAAGCATAGCAGATCTAGAGATCACCAAAGCTGTTATTCTAGGGAACCATGACGCATGGAATACTCAAAAGTTCTCTGGGAA</genome_strand>
        <mrna_strand>TCAACGGTAGCACGTTGTTACACGCGCCGACTCAATTCCGTGGCATTACGGGCTCTGTCCGTCATCCAGCGCCGTCAAAACTTGTCGTCGGTCACTTCCCGATGGAATCTTCCGTCCGAATCGTTGTCGTCGGCGACGTC..................................................................................................................................................................................................................................................................................................................................................................................................CATGATGATTGGAACCTTGAAGAAGATAGGAAGGCTCTTCAACTCTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGATTTGGTGCTCTTTACAG..............................................................................................................................................GGGATTTTGGGAATGAAAATGTGGATCTAGTCCGAAGCATAGCAGATCTAGAGATCACCAAAGCTGTTATTCTAGGGAACCATGACGCATGGAATACTCAAAAGTTCTCTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E353878" ref_strand="+" ref_description="SGN-E353878 [cTOS-10-G23]">
      <seq>gaatattcaagattaacaattattcatagagatataaaagccagcaatattctattggacttacaaatgaaaccaaagatttctgactttggaatggcaagaattttcaagaaagatgcaattgaagcaaataccaaaaaaatagttggaacaaagggttatattccacctgaatatgcaattgaaggcagatattcaacaaaatcagatgttttcagttttggagtacttcttcttcaaatcataagtggaaaaaagaatacatgttactatggtccagatgacaatttagaccttcttgattatgcatttgagatgtttaaagatggtgatggcatggaatttatggatcaatcgcttgatgatacaacacattcttgtaaactattaaaatgcatgcaaattgcattattatgtgtccaaaaaaatccattggataggcctacaatgttggaaatttcatctatgttcaaaaatattgaaaatttagttatgaatactccaaagaggcctgcattttctacaagacaagatgaagatcaagttggcaatagtattccaaatggggaatttgatattgacaatgcaacaattacacaattggttgcaagatgatatatgctactccttgcaattgatttaatatgattagtaggtaatatgtcttatttttaattgcgaatcccgagtatttatggatgttggctacctagtcgtatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46571" stop="44885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46271" g_stop="46117" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46116" i_stop="45887" i_length="230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45886" g_stop="45736" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="306" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45735" i_stop="45603" i_length="133">
            <donor d_prob="0.420" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45602" g_stop="45185" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="723" r_length="417" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E353878" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46271" e_stop="46117"/>
          <exon e_start="45886" e_stop="45736"/>
          <exon e_start="45602" e_stop="45185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTCAAGATTAACAATTATTCATAGAGATATAAAAGCCAGCAATATTCTATTGGACTTACAAATGAAACCAAAGATTTCTGACTTTGGAATGGCAAGAATTTTCAAGAAAGATGCAATTGAAGCAAATACCAAAAAAATAGTTGGAACAAAGTAAGTACTATACATATATTTTCGAATTAAATTTATTTATTTACATTTATTAAAAAAATATAACCGGTCCACGAAACACATCAGGTTTCAGAAAGGGTTGACACACTAAAGGGTGGTGATGTAGACAGTTTTTTCCTAAAACTAGCATATGACATCAGTGACTGAATCCACAACTCGAATCTTAATTCAATTTTTATGTATATATTTATTTAATTTGCTATGTGTTGTAGGGGTTATATTCCACCTGAATATGCAATTGAAGGCAGATATTCAACAAAATCAGATGTTTTCAGTTTTGGAGTACTTCTTCTTCAAATCATAAGTGGAAAAAAGAATACATGTTACTATGGTCCAGATGACAATTTAGACCTTCTTGATTATGTGAGTTGTGAATATAAATTCATATATATATATATATATATATATATATATATATATATATATATACACACACACCATTGAGATTTAATTTATAAATACCAGTAATTAATATTTTTTTAAAAAAAATATACAGGCATTTGAGATGTTTAAAGATGGTGATGGCATGGAATTTATGGATCAATCGCTTGATGATACAACACATTCTTGTAAACTATTAAAATGCATGCAAATTGCATTATTATGTGTCCAAAAAAATCCATTGGATAGGCCTACAATGTTGGAAATTTCATCTATGTTCAAAAATATTGAAAATTTAGTTATGAATACTCCAAAGAGGCCTGCATTTTCTACAAGACAAGATGAAGATCAAGTTGGCAATAGTATTCCAAATGGGGAATTTGATATTGACAATGCAACAATTACACAATTGGTTGCAAGATGATATATGCTACTCCTTGCAATTGATTTAATATGATTAGTAGGTAATATGTCTTATTTTTAAATTGCGAATCCCGAGTATTTATGGATGTTGGCTACCTAGTCGTATTTAT</genome_strand>
        <mrna_strand>GAATATTCAAGATTAACAATTATTCATAGAGATATAAAAGCCAGCAATATTCTATTGGACTTACAAATGAAACCAAAGATTTCTGACTTTGGAATGGCAAGAATTTTCAAGAAAGATGCAATTGAAGCAAATACCAAAAAAATAGTTGGAACAAA......................................................................................................................................................................................................................................GGGTTATATTCCACCTGAATATGCAATTGAAGGCAGATATTCAACAAAATCAGATGTTTTCAGTTTTGGAGTACTTCTTCTTCAAATCATAAGTGGAAAAAAGAATACATGTTACTATGGTCCAGATGACAATTTAGACCTTCTTGATTAT.....................................................................................................................................GCATTTGAGATGTTTAAAGATGGTGATGGCATGGAATTTATGGATCAATCGCTTGATGATACAACACATTCTTGTAAACTATTAAAATGCATGCAAATTGCATTATTATGTGTCCAAAAAAATCCATTGGATAGGCCTACAATGTTGGAAATTTCATCTATGTTCAAAAATATTGAAAATTTAGTTATGAATACTCCAAAGAGGCCTGCATTTTCTACAAGACAAGATGAAGATCAAGTTGGCAATAGTATTCCAAATGGGGAATTTGATATTGACAATGCAACAATTACACAATTGGTTGCAAGATGATATATGCTACTCCTTGCAATTGATTTAATATGATTAGTAGGTAATATGTCTTATTTTT-AATTGCGAATCCCGAGTATTTATGGATGTTGGCTACCTAGTCGTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E352453" ref_strand="+" ref_description="SGN-E352453 [cTOS-9-A21]">
      <seq>aagaatattcaagattaacaattattcatagagatataaaagccagcaatattctattggacttacaaatgaaaccaaagatttctgactttggaatggcaagaattttcaagaaagatgcaattgaagcaaataccaaaaaaatagttggaacaaagggttatattccacctgaatatgcaattgaaggcagatattcaacaaaatcagatgttttcagttttggagtacttcttcttcaaatcataagtggaaaaaagaatacatgttactatggtccagatgacaatttagaccttcttgattatgcatttgagatgtttaaagatggtgatggcatggaatttatggatcaatcgcttgatgatacaacacattcttgtaaactattaaaatgcatgcaaattgcattattatgtgtccaaaaaaatccattggataggcctacaatgttggaaatttcatctatgttcaaaaatattgaaaatttagttatgaatactccaaagaggcctgcattttctacaagacaagatgaagatcaagttggcaatagtattccaaatggggaatttgatattgacaatgcaacaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46573" stop="45014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46273" g_stop="46117" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46116" i_stop="45887" i_length="230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45886" g_stop="45736" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="308" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45735" i_stop="45603" i_length="133">
            <donor d_prob="0.420" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45602" g_stop="45314" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="597" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E352453" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46273" e_stop="46117"/>
          <exon e_start="45886" e_stop="45736"/>
          <exon e_start="45602" e_stop="45314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATATTCAAGATTAACAATTATTCATAGAGATATAAAAGCCAGCAATATTCTATTGGACTTACAAATGAAACCAAAGATTTCTGACTTTGGAATGGCAAGAATTTTCAAGAAAGATGCAATTGAAGCAAATACCAAAAAAATAGTTGGAACAAAGTAAGTACTATACATATATTTTCGAATTAAATTTATTTATTTACATTTATTAAAAAAATATAACCGGTCCACGAAACACATCAGGTTTCAGAAAGGGTTGACACACTAAAGGGTGGTGATGTAGACAGTTTTTTCCTAAAACTAGCATATGACATCAGTGACTGAATCCACAACTCGAATCTTAATTCAATTTTTATGTATATATTTATTTAATTTGCTATGTGTTGTAGGGGTTATATTCCACCTGAATATGCAATTGAAGGCAGATATTCAACAAAATCAGATGTTTTCAGTTTTGGAGTACTTCTTCTTCAAATCATAAGTGGAAAAAAGAATACATGTTACTATGGTCCAGATGACAATTTAGACCTTCTTGATTATGTGAGTTGTGAATATAAATTCATATATATATATATATATATATATATATATATATATATATATATACACACACACCATTGAGATTTAATTTATAAATACCAGTAATTAATATTTTTTTAAAAAAAATATACAGGCATTTGAGATGTTTAAAGATGGTGATGGCATGGAATTTATGGATCAATCGCTTGATGATACAACACATTCTTGTAAACTATTAAAATGCATGCAAATTGCATTATTATGTGTCCAAAAAAATCCATTGGATAGGCCTACAATGTTGGAAATTTCATCTATGTTCAAAAATATTGAAAATTTAGTTATGAATACTCCAAAGAGGCCTGCATTTTCTACAAGACAAGATGAAGATCAAGTTGGCAATAGTATTCCAAATGGGGAATTTGATATTGACAATGCAACAATTA</genome_strand>
        <mrna_strand>AAGAATATTCAAGATTAACAATTATTCATAGAGATATAAAAGCCAGCAATATTCTATTGGACTTACAAATGAAACCAAAGATTTCTGACTTTGGAATGGCAAGAATTTTCAAGAAAGATGCAATTGAAGCAAATACCAAAAAAATAGTTGGAACAAA......................................................................................................................................................................................................................................GGGTTATATTCCACCTGAATATGCAATTGAAGGCAGATATTCAACAAAATCAGATGTTTTCAGTTTTGGAGTACTTCTTCTTCAAATCATAAGTGGAAAAAAGAATACATGTTACTATGGTCCAGATGACAATTTAGACCTTCTTGATTAT.....................................................................................................................................GCATTTGAGATGTTTAAAGATGGTGATGGCATGGAATTTATGGATCAATCGCTTGATGATACAACACATTCTTGTAAACTATTAAAATGCATGCAAATTGCATTATTATGTGTCCAAAAAAATCCATTGGATAGGCCTACAATGTTGGAAATTTCATCTATGTTCAAAAATATTGAAAATTTAGTTATGAATACTCCAAAGAGGCCTGCATTTTCTACAAGACAAGATGAAGATCAAGTTGGCAATAGTATTCCAAATGGGGAATTTGATATTGACAATGCAACAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E379504" ref_strand="+" ref_description="SGN-E379504 [TUS-3-H5]">
      <seq>atcaaacttttcttcttatttttcttcttccaacaattaattttctctaatggacaaaataatgttgttaaaggagggtattggtttagggatagtggattatctttaaacaacattgattcaactcttttcacacatttattttgtgcgttcgcaaaccttaaccctcaatcgaatcaattagtcatatcgccagaagatcaagattcgttcagacaatttacgagcatagttatgaggaagaatccgtcggttaaaactttgttgtccatagggggagggagagctaatagaacagcttatggaatcatggcaagaacaacaaattcaagaaaaagttttattgattcatcaataaaattggctagacaattgggatttcatggacttgatcttgattgggaatatcctgaatcaactatagacatgacaaatttagcttcacaaacatggggagcatcacctcaagctgtgaaatgatggaataattctatttgtgtgtttaatttgtcacgtagtatttcttataataaagtgacaaatatgtgaaccatgacatataaaataaataaaaatccatgtaccatattggatgttttagtttattacacttaaaagtgaaatcataaagtaaaaaaatattattaattaattatgaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54926" stop="51973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54626" g_stop="54188" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54187" i_stop="52497" i_length="1691">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52496" g_stop="52273" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="663" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E379504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54626" e_stop="54188"/>
          <exon e_start="52496" e_stop="52273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTTTTCTTCTTATTTTTCTTCTTCCAACAATTAATTTTCTCTAATGGACAAAATAATGTTGTTAAAGGAGGGTATTGGTTTAGGGATAGTGGATTATCTTTAAACAACATTGATTCAACTCTTTTCACACATTTATTTTGTGCGTTCGCAAACCTTAACCCTCAATCGAATCAATTAGTCATATCGCCAGAAGATCAAGATTCGTTCAGACAATTTACGAGCATAGTTATGAGGAAGAATCCGTCGGTTAAAACTTTGTTGTCCATAGGGGGAGGGAGAGCTAATAGAACAGCTTATGGAATCATGGCAAGAACAACAAATTCAAGAAAAAGTTTTATTGATTCATCAATAAAATTGGCTAGACAATTGGGATTTCATGGACTTGATCTTGATTGGGAATATCCTGAATCAACTATAGACATGACAAATTTAGGTACGTTAAATTGTGTGGTCATCATTTTACTAATGTGTTTGTTATTTTGGGAATGATGTGGGTTCGGAGAATTATGTTGATTTTTTGCAAAAACGATCATTTGTTTTTTGTTGGTCGATTTTGGGTATGTTTTTAGTACACTTTGTGAAATTAGGTCTTGGATCTAATTCACATTTCAAAAATTAGTTCAAGGAAGGAAAATTGCCCGAGTTCAACCACCAACGTGGTGCCTTTGTCGTTCTTTAACATACTATATTTGTTTCTCTCTTTCTTGCGCACACATACTTCCCTGTCTAAAATATCGAGTTATGCCAAACACATCAATCATGATTTATCATTTGTTTAGAAGAAATTTGTATTCAAAACCTAACTCGACCGACTAATGATCTCCATATGAGATAATGATCGTCTAACCATCCAATTTAAAATTCTAATTTCTTTAATTATCTTAAATAGGTATTCTTTTAGACGATTTTCGTGCTGCCATCAACACAGAGGCAAGAAACTCCGGTAAGGCATCACTATTTCTCACATCGGCTGTTTCCAACACACCCCGAGTCAATGGTTTGAACTATCCGGTTCAATCAGTGGCTCGAAACTTAGATTGGCTCAATGTCATGTCATATGACTTCTACGGACCAAACTGGTCACCATCACAAACCAACTCTCATGCACAATTATTTGACCCCGTGAGCCACGTGAGCGGTAGTGATGGGACTGCTTCATGGATTCAAGCCGGTGTTTCTGCACAAAAATTAGTTCTTGGAATTCCATTTTATGGCTATGCTTGGCAATTGGTTAATGCGAATAATCATGGACTTAGGGCTCCGGCAAATGGTAAATCAAATGCTGGTTCGATCGATGATGGATCGATGACTTATAATCAAATCAAAAATTATATAGTGCAAAATCGTGCCACAACGGTGTATAATGCAACAATTGTTGGAGATTATTGTTATTCTGGTAATACTTGGATTAGTTATGACGATACTCAAAGTGTTAGAAATAAGGTTACTTACGTTAAAGGTAGAAAATTGCGTGGTTATTTTGCGTGGCACGTGGCAGCAGACCAAAATTGGCTACTTTCTAAGACAGGTTAGTAATTTTTTTTTAGGAAAATGTACGAGTATCTTCTCAACCGATGTTTGAAATTTTACACACACTTATACTATACTAAGGTTCTATTACCCTCCTGAACTTATTTTAAAAATAACTTTTTATCCTTTTCGGCCTACGTAGTACTAACTTGAAAAAAAAGTCAATCAGTGTTGGACCCACAAGATAGTGTCACATAAGCCGAAAATAGATAGAAAATTATTTATAAAATAAATAGAAGGGGTAATATGACCTTAGTATAGTATAAGTGTGTTTATGAAATTTTGAACATTGAGGGGTACTTATGCGTTATCCCATTTTCTTTCATTTTTTTCTTTTCTATAATATGAAGAAATATTTAAATACTTTTGAATAATAAAAGAGATTATATAAATATTTTAACTATTTTTTATAGTTTTTTTTGGGTACTTTATGTCATCGGTGTTTTCTCATAAGATTCTAATCAATGCATGATCTTATTATTTGGACAACAAAGGGAATTTTTGAATTATTAGATTATTGACTTCCAAGATTAATATTTGTTTTGTATTTTTAATTATTTTGTTCTAATCTTCTATAACTTTTAATTCTTGCAGCTTCACAAACATGGGGAGCATCACCTCAAGCTGTGAAATGATGGAATAATTCTATTTGTGTGTTTAATTTGTCACGTAGTATTTCTTATAATAAAGTGACAAATATGTGAACCATGACATATAAAATAAATAAAAATCCATGTACCATATTGGATGTTTTAGTTTATTACACTTAAAAGTGAAATCATAAAGTAAAAAAATATTATTAATTAATTATGAATTCC</genome_strand>
        <mrna_strand>ATCAAACTTTTCTTCTTATTTTTCTTCTTCCAACAATTAATTTTCTCTAATGGACAAAATAATGTTGTTAAAGGAGGGTATTGGTTTAGGGATAGTGGATTATCTTTAAACAACATTGATTCAACTCTTTTCACACATTTATTTTGTGCGTTCGCAAACCTTAACCCTCAATCGAATCAATTAGTCATATCGCCAGAAGATCAAGATTCGTTCAGACAATTTACGAGCATAGTTATGAGGAAGAATCCGTCGGTTAAAACTTTGTTGTCCATAGGGGGAGGGAGAGCTAATAGAACAGCTTATGGAATCATGGCAAGAACAACAAATTCAAGAAAAAGTTTTATTGATTCATCAATAAAATTGGCTAGACAATTGGGATTTCATGGACTTGATCTTGATTGGGAATATCCTGAATCAACTATAGACATGACAAATTTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACAAACATGGGGAGCATCACCTCAAGCTGTGAAATGATGGAATAATTCTATTTGTGTGTTTAATTTGTCACGTAGTATTTCTTATAATAAAGTGACAAATATGTGAACCATGACATATAAAATAAATAAAAATCCATGTACCATATTGGATGTTTTAGTTTATTACACTTAAAAGTGAAATCATAAAGTAAAAAAATATTATTAATTAATTATGAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E379667" ref_strand="-" ref_description="SGN-E379667 [TUS-3-H5]">
      <seq>catcaaacttttcttcttatttttcttcttccaacaattaattttctctaatggacaaaataatgttgttaaaggagggtattggtttagggatagtggattatctttaaacaacattgattcaactcttttcacacatttattttgtgcgttcgcaaaccttaaccctcaatcgaatcaattagtcatatcgccagaagatcaagattcgttcagacaatttacgagcatagttatgaggaagaatccgtcggttaaaactttgttgtccatagggggagggagagctaatagaacagcttatggaatcatggcaagaacaacaaattcaagaaaaagttttattgattcatcaataaaattggctagacaattgggatttcatggacttgatcttgattgggaatatcctgaatcaactatagacatgacaaatttagcttcacaaacatggggagcatcacctcaagctgtgaaatgatggaataattctatttgtgtgtttaatttgtcacgtagtatttcttataataaagtgacaaatatgtgaaccatgacatataaaataaataaaaatccatgtaccatattggatgttttagtttattactctccaaagtgaggacataaagtaaaaaaatattataataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54927" stop="51983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54627" g_stop="54188" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54187" i_stop="52497" i_length="1691">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52496" g_stop="52282" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="653" r_length="213" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E379667" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379667" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54627" e_stop="54188"/>
          <exon e_start="52496" e_stop="52282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAACTTTTCTTCTTATTTTTCTTCTTCCAACAATTAATTTTCTCTAATGGACAAAATAATGTTGTTAAAGGAGGGTATTGGTTTAGGGATAGTGGATTATCTTTAAACAACATTGATTCAACTCTTTTCACACATTTATTTTGTGCGTTCGCAAACCTTAACCCTCAATCGAATCAATTAGTCATATCGCCAGAAGATCAAGATTCGTTCAGACAATTTACGAGCATAGTTATGAGGAAGAATCCGTCGGTTAAAACTTTGTTGTCCATAGGGGGAGGGAGAGCTAATAGAACAGCTTATGGAATCATGGCAAGAACAACAAATTCAAGAAAAAGTTTTATTGATTCATCAATAAAATTGGCTAGACAATTGGGATTTCATGGACTTGATCTTGATTGGGAATATCCTGAATCAACTATAGACATGACAAATTTAGGTACGTTAAATTGTGTGGTCATCATTTTACTAATGTGTTTGTTATTTTGGGAATGATGTGGGTTCGGAGAATTATGTTGATTTTTTGCAAAAACGATCATTTGTTTTTTGTTGGTCGATTTTGGGTATGTTTTTAGTACACTTTGTGAAATTAGGTCTTGGATCTAATTCACATTTCAAAAATTAGTTCAAGGAAGGAAAATTGCCCGAGTTCAACCACCAACGTGGTGCCTTTGTCGTTCTTTAACATACTATATTTGTTTCTCTCTTTCTTGCGCACACATACTTCCCTGTCTAAAATATCGAGTTATGCCAAACACATCAATCATGATTTATCATTTGTTTAGAAGAAATTTGTATTCAAAACCTAACTCGACCGACTAATGATCTCCATATGAGATAATGATCGTCTAACCATCCAATTTAAAATTCTAATTTCTTTAATTATCTTAAATAGGTATTCTTTTAGACGATTTTCGTGCTGCCATCAACACAGAGGCAAGAAACTCCGGTAAGGCATCACTATTTCTCACATCGGCTGTTTCCAACACACCCCGAGTCAATGGTTTGAACTATCCGGTTCAATCAGTGGCTCGAAACTTAGATTGGCTCAATGTCATGTCATATGACTTCTACGGACCAAACTGGTCACCATCACAAACCAACTCTCATGCACAATTATTTGACCCCGTGAGCCACGTGAGCGGTAGTGATGGGACTGCTTCATGGATTCAAGCCGGTGTTTCTGCACAAAAATTAGTTCTTGGAATTCCATTTTATGGCTATGCTTGGCAATTGGTTAATGCGAATAATCATGGACTTAGGGCTCCGGCAAATGGTAAATCAAATGCTGGTTCGATCGATGATGGATCGATGACTTATAATCAAATCAAAAATTATATAGTGCAAAATCGTGCCACAACGGTGTATAATGCAACAATTGTTGGAGATTATTGTTATTCTGGTAATACTTGGATTAGTTATGACGATACTCAAAGTGTTAGAAATAAGGTTACTTACGTTAAAGGTAGAAAATTGCGTGGTTATTTTGCGTGGCACGTGGCAGCAGACCAAAATTGGCTACTTTCTAAGACAGGTTAGTAATTTTTTTTTAGGAAAATGTACGAGTATCTTCTCAACCGATGTTTGAAATTTTACACACACTTATACTATACTAAGGTTCTATTACCCTCCTGAACTTATTTTAAAAATAACTTTTTATCCTTTTCGGCCTACGTAGTACTAACTTGAAAAAAAAGTCAATCAGTGTTGGACCCACAAGATAGTGTCACATAAGCCGAAAATAGATAGAAAATTATTTATAAAATAAATAGAAGGGGTAATATGACCTTAGTATAGTATAAGTGTGTTTATGAAATTTTGAACATTGAGGGGTACTTATGCGTTATCCCATTTTCTTTCATTTTTTTCTTTTCTATAATATGAAGAAATATTTAAATACTTTTGAATAATAAAAGAGATTATATAAATATTTTAACTATTTTTTATAGTTTTTTTTGGGTACTTTATGTCATCGGTGTTTTCTCATAAGATTCTAATCAATGCATGATCTTATTATTTGGACAACAAAGGGAATTTTTGAATTATTAGATTATTGACTTCCAAGATTAATATTTGTTTTGTATTTTTAATTATTTTGTTCTAATCTTCTATAACTTTTAATTCTTGCAGCTTCACAAACATGGGGAGCATCACCTCAAGCTGTGAAATGATGGAATAATTCTATTTGTGTGTTTAATTTGTCACGTAGTATTTCTTATAATAAAGTGACAAATATGTGAACCATGACATATAAAATAAATAAAAATCCATGTACCATATTGGATGTTTTAGTTTATTACACTTAAAAGTGAAATCATAAAGTAAAAAAATATTATTAATTAATT</genome_strand>
        <mrna_strand>CATCAAACTTTTCTTCTTATTTTTCTTCTTCCAACAATTAATTTTCTCTAATGGACAAAATAATGTTGTTAAAGGAGGGTATTGGTTTAGGGATAGTGGATTATCTTTAAACAACATTGATTCAACTCTTTTCACACATTTATTTTGTGCGTTCGCAAACCTTAACCCTCAATCGAATCAATTAGTCATATCGCCAGAAGATCAAGATTCGTTCAGACAATTTACGAGCATAGTTATGAGGAAGAATCCGTCGGTTAAAACTTTGTTGTCCATAGGGGGAGGGAGAGCTAATAGAACAGCTTATGGAATCATGGCAAGAACAACAAATTCAAGAAAAAGTTTTATTGATTCATCAATAAAATTGGCTAGACAATTGGGATTTCATGGACTTGATCTTGATTGGGAATATCCTGAATCAACTATAGACATGACAAATTTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACAAACATGGGGAGCATCACCTCAAGCTGTGAAATGATGGAATAATTCTATTTGTGTGTTTAATTTGTCACGTAGTATTTCTTATAATAAAGTGACAAATATGTGAACCATGACATATAAAATAAATAAAAATCCATGTACCATATTGGATGTTTTAGTTTATTACTCTCCAAAGTGAGGACATAAAGTAAAAAAATATTA-TAA-TAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E209171" ref_strand="+" ref_description="SGN-E209171 [cLEC-38-L11]">
      <seq>atcaaactttacttcttatttttcttcttccaacaattaattttctctaatggacaaaataatgttgttaaaggagggtattggtttagggatagtggattatctttaaacaacattgattcaactcttttcacacatttattttgtgcgttcgcaaaccttaaccctcaatcgaatcaattagtcatatcgccagaagatcaagattcgttcagacaatttacgagcatagttatgaggaagaatccgtcggttaaaactttgttgtccatagggggagggagagctaatagaacagcttatggaatcatggcaagaacatctcattcaagaaaaagttttattgattcatcaattaaattggctagacaattgggatttcatggacttgatcttgattgggaatatcctgaatcaactatagacatgacagattcagcttcacaaacatggggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="54926" stop="52177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54626" g_stop="54188" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54187" i_stop="52497" i_length="1691">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52496" g_stop="52477" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="459" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E209171" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54626" e_stop="54188"/>
          <exon e_start="52496" e_stop="52477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTTTTCTTCTTATTTTTCTTCTTCCAACAATTAATTTTCTCTAATGGACAAAATAATGTTGTTAAAGGAGGGTATTGGTTTAGGGATAGTGGATTATCTTTAAACAACATTGATTCAACTCTTTTCACACATTTATTTTGTGCGTTCGCAAACCTTAACCCTCAATCGAATCAATTAGTCATATCGCCAGAAGATCAAGATTCGTTCAGACAATTTACGAGCATAGTTATGAGGAAGAATCCGTCGGTTAAAACTTTGTTGTCCATAGGGGGAGGGAGAGCTAATAGAACAGCTTATGGAATCATGGCAAGAACAACAAATTCAAGAAAAAGTTTTATTGATTCATCAATAAAATTGGCTAGACAATTGGGATTTCATGGACTTGATCTTGATTGGGAATATCCTGAATCAACTATAGACATGACAAATTTAGGTACGTTAAATTGTGTGGTCATCATTTTACTAATGTGTTTGTTATTTTGGGAATGATGTGGGTTCGGAGAATTATGTTGATTTTTTGCAAAAACGATCATTTGTTTTTTGTTGGTCGATTTTGGGTATGTTTTTAGTACACTTTGTGAAATTAGGTCTTGGATCTAATTCACATTTCAAAAATTAGTTCAAGGAAGGAAAATTGCCCGAGTTCAACCACCAACGTGGTGCCTTTGTCGTTCTTTAACATACTATATTTGTTTCTCTCTTTCTTGCGCACACATACTTCCCTGTCTAAAATATCGAGTTATGCCAAACACATCAATCATGATTTATCATTTGTTTAGAAGAAATTTGTATTCAAAACCTAACTCGACCGACTAATGATCTCCATATGAGATAATGATCGTCTAACCATCCAATTTAAAATTCTAATTTCTTTAATTATCTTAAATAGGTATTCTTTTAGACGATTTTCGTGCTGCCATCAACACAGAGGCAAGAAACTCCGGTAAGGCATCACTATTTCTCACATCGGCTGTTTCCAACACACCCCGAGTCAATGGTTTGAACTATCCGGTTCAATCAGTGGCTCGAAACTTAGATTGGCTCAATGTCATGTCATATGACTTCTACGGACCAAACTGGTCACCATCACAAACCAACTCTCATGCACAATTATTTGACCCCGTGAGCCACGTGAGCGGTAGTGATGGGACTGCTTCATGGATTCAAGCCGGTGTTTCTGCACAAAAATTAGTTCTTGGAATTCCATTTTATGGCTATGCTTGGCAATTGGTTAATGCGAATAATCATGGACTTAGGGCTCCGGCAAATGGTAAATCAAATGCTGGTTCGATCGATGATGGATCGATGACTTATAATCAAATCAAAAATTATATAGTGCAAAATCGTGCCACAACGGTGTATAATGCAACAATTGTTGGAGATTATTGTTATTCTGGTAATACTTGGATTAGTTATGACGATACTCAAAGTGTTAGAAATAAGGTTACTTACGTTAAAGGTAGAAAATTGCGTGGTTATTTTGCGTGGCACGTGGCAGCAGACCAAAATTGGCTACTTTCTAAGACAGGTTAGTAATTTTTTTTTAGGAAAATGTACGAGTATCTTCTCAACCGATGTTTGAAATTTTACACACACTTATACTATACTAAGGTTCTATTACCCTCCTGAACTTATTTTAAAAATAACTTTTTATCCTTTTCGGCCTACGTAGTACTAACTTGAAAAAAAAGTCAATCAGTGTTGGACCCACAAGATAGTGTCACATAAGCCGAAAATAGATAGAAAATTATTTATAAAATAAATAGAAGGGGTAATATGACCTTAGTATAGTATAAGTGTGTTTATGAAATTTTGAACATTGAGGGGTACTTATGCGTTATCCCATTTTCTTTCATTTTTTTCTTTTCTATAATATGAAGAAATATTTAAATACTTTTGAATAATAAAAGAGATTATATAAATATTTTAACTATTTTTTATAGTTTTTTTTGGGTACTTTATGTCATCGGTGTTTTCTCATAAGATTCTAATCAATGCATGATCTTATTATTTGGACAACAAAGGGAATTTTTGAATTATTAGATTATTGACTTCCAAGATTAATATTTGTTTTGTATTTTTAATTATTTTGTTCTAATCTTCTATAACTTTTAATTCTTGCAGCTTCACAAACATGGGGAGCA</genome_strand>
        <mrna_strand>ATCAAACTTTACTTCTTATTTTTCTTCTTCCAACAATTAATTTTCTCTAATGGACAAAATAATGTTGTTAAAGGAGGGTATTGGTTTAGGGATAGTGGATTATCTTTAAACAACATTGATTCAACTCTTTTCACACATTTATTTTGTGCGTTCGCAAACCTTAACCCTCAATCGAATCAATTAGTCATATCGCCAGAAGATCAAGATTCGTTCAGACAATTTACGAGCATAGTTATGAGGAAGAATCCGTCGGTTAAAACTTTGTTGTCCATAGGGGGAGGGAGAGCTAATAGAACAGCTTATGGAATCATGGCAAGAACATCTCATTCAAGAAAAAGTTTTATTGATTCATCAATTAAATTGGCTAGACAATTGGGATTTCATGGACTTGATCTTGATTGGGAATATCCTGAATCAACTATAGACATGACAGATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACAAACATGGGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E540303" ref_strand="-" ref_description="SGN-E540303 [TUS-60-I5]">
      <seq>gttgtatatgattctgctactgtttctgcttattctgtggctggaacttcttggattggctttgatgacactaactctgttgcaatgaagttacactatgctcaatcacaaagacttagaggctacttcttttgggctgttgctggtgataaagattggaaaatctcaacaacagctaagcaatcatggattatttcctaagagatgaagcgggggggggggggggggaatgactcttcctttgaacttatatatattttgtttgtggaagtgtattgaagctgaatagttcatcttctttttatttatgcactatatatatatatatatatatatatgttgtatcatttagttatatgtacttttcagctaataacgtttatttcaagtgtaagagagaatacaaacttttaacttaaaaaaaaaaaaaaaaaaactcgaggggggcccggtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="+" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63892" stop="65135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64192" g_stop="64366" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64367" i_stop="64588" i_length="222">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64589" g_stop="64835" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="422" r_length="247" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="437"/>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="+" ref_id="SGN-E540303" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540303" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64192" e_stop="64366"/>
          <exon e_start="64589" e_stop="64835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTATATGATTCTGCTACTGTTTCTGCTTATTCTGTGGCTGGAACTTCTTGGATTGGCTTTGATGACACTAACTCTGTTGCAATGAAGTTACACTATGCTCAATCACAAAGACTTAGAGGCTACTTCTTTTGGGCTGTTGCTGGTGATAAAGATTGGAAAATCTCAACAACAGGTAATTAACTCACTTGCTTTACATGTTATTTTACGAATATTCAACTCGTATACACTGACAGTGTCAAGAATTTTCTTAATAAGTGAGATTAGTTATAACATGACTAAAATTGGTGTTGCAGTATATAAGTTAAATCTTGCTAAAAGAAGATGTAGCATATTGATTGTTGCTAAATCACAACTTTTTACGGATACTCACTTTGTTCTTTTTCTTATTGTGTAGCTAAGCAATCATGGATTATTTCCTAAGAGATGAAGCGGGGGGGGGGGGGGGGGGGAATGACTCTTCCTTTGAACTTATATATATTTTGTTTGTGGAAGTGTATTGAAGCTGAATAGTTCATCTTCTTTTTATTTATGCAC--TATATATATATATATATATATATGTTGTATCATTTAGTTATATGTACTTTTCAGCTAATAACGTTTATTTCAAGTGTAAGAGAGAATACAAACTTTTAACTTAGAAA</genome_strand>
        <mrna_strand>GTTGTATATGATTCTGCTACTGTTTCTGCTTATTCTGTGGCTGGAACTTCTTGGATTGGCTTTGATGACACTAACTCTGTTGCAATGAAGTTACACTATGCTCAATCACAAAGACTTAGAGGCTACTTCTTTTGGGCTGTTGCTGGTGATAAAGATTGGAAAATCTCAACAACAG..............................................................................................................................................................................................................................CTAAGCAATCATGGATTATTTCCTAAGAGATGAAGC--GGGGGGGGGGGGGGGGGAATGACTCTTCCTTTGAACTTATATATATTTTGTTTGTGGAAGTGTATTGAAGCTGAATAGTTCATCTTCTTTTTATTTATGCACTATATATATATATATATATATATATGTTGTATCATTTAGTTATATGTACTTTTCAGCTAATAACGTTTATTTCAAGTGTAAGAGAGAATACAAACTTTTAACTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E540305" ref_strand="+" ref_description="SGN-E540305 [TUS-60-I5]">
      <seq>gttgtatatgattctgctactgtttctgcttattctgtggctggaacttcttggattggctttgatgacactaactctgttgcaatgaagttacactatgctcaatcacaaagacttagaggctacttcttttgggctgttgctggtgataaagattggaaaatctcaacaacagctaagcaatcatggattatttcctaagagatgaagcgggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="+" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63892" stop="64930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64192" g_stop="64366" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64367" i_stop="64588" i_length="222">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64589" g_stop="64630" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="217" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="+" ref_id="SGN-E540305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64192" e_stop="64366"/>
          <exon e_start="64589" e_stop="64630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTATATGATTCTGCTACTGTTTCTGCTTATTCTGTGGCTGGAACTTCTTGGATTGGCTTTGATGACACTAACTCTGTTGCAATGAAGTTACACTATGCTCAATCACAAAGACTTAGAGGCTACTTCTTTTGGGCTGTTGCTGGTGATAAAGATTGGAAAATCTCAACAACAGGTAATTAACTCACTTGCTTTACATGTTATTTTACGAATATTCAACTCGTATACACTGACAGTGTCAAGAATTTTCTTAATAAGTGAGATTAGTTATAACATGACTAAAATTGGTGTTGCAGTATATAAGTTAAATCTTGCTAAAAGAAGATGTAGCATATTGATTGTTGCTAAATCACAACTTTTTACGGATACTCACTTTGTTCTTTTTCTTATTGTGTAGCTAAGCAATCATGGATTATTTCCTAAGAGATGAAGCGGGGGG</genome_strand>
        <mrna_strand>GTTGTATATGATTCTGCTACTGTTTCTGCTTATTCTGTGGCTGGAACTTCTTGGATTGGCTTTGATGACACTAACTCTGTTGCAATGAAGTTACACTATGCTCAATCACAAAGACTTAGAGGCTACTTCTTTTGGGCTGTTGCTGGTGATAAAGATTGGAAAATCTCAACAACAG..............................................................................................................................................................................................................................CTAAGCAATCATGGATTATTTCCTAAGAGATGAAGCGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E286804" ref_strand="+" ref_description="SGN-E286804 [cLES-14-G23]">
      <seq>ttgtatatgattctgctactgtttctgcttattctgtggctggaacttcttggattggctttgatgacactaactctgttgcaatgaagttacactatgctcaatcacaaagacttagaggctacttcttttgggctgttgctggtgataaagattggaaaatctcaacaacagctaagcaatcatggattatttcctaagagatggagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="+" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63893" stop="64925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64193" g_stop="64366" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64367" i_stop="64588" i_length="222">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64589" g_stop="64625" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="211" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="+" ref_id="SGN-E286804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64193" e_stop="64366"/>
          <exon e_start="64589" e_stop="64625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATATGATTCTGCTACTGTTTCTGCTTATTCTGTGGCTGGAACTTCTTGGATTGGCTTTGATGACACTAACTCTGTTGCAATGAAGTTACACTATGCTCAATCACAAAGACTTAGAGGCTACTTCTTTTGGGCTGTTGCTGGTGATAAAGATTGGAAAATCTCAACAACAGGTAATTAACTCACTTGCTTTACATGTTATTTTACGAATATTCAACTCGTATACACTGACAGTGTCAAGAATTTTCTTAATAAGTGAGATTAGTTATAACATGACTAAAATTGGTGTTGCAGTATATAAGTTAAATCTTGCTAAAAGAAGATGTAGCATATTGATTGTTGCTAAATCACAACTTTTTACGGATACTCACTTTGTTCTTTTTCTTATTGTGTAGCTAAGCAATCATGGATTATTTCCTAAGAGATGAAGCG</genome_strand>
        <mrna_strand>TTGTATATGATTCTGCTACTGTTTCTGCTTATTCTGTGGCTGGAACTTCTTGGATTGGCTTTGATGACACTAACTCTGTTGCAATGAAGTTACACTATGCTCAATCACAAAGACTTAGAGGCTACTTCTTTTGGGCTGTTGCTGGTGATAAAGATTGGAAAATCTCAACAACAG..............................................................................................................................................................................................................................CTAAGCAATCATGGATTATTTCCTAAGAGATGGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E734613" ref_strand="+" ref_description="SGN-E734613 [LB13AE09]">
      <seq>gggatattttactcaggatgaatggagaaaaggtttaaaagatctccaggttgatacgattaacaaattgaaaaaagccctgccaaaattggaagcagaggttatgatgcctgaaaattttgaggatttttattcctacgcctttcgttactgccttactgaggataagcagaagtgtgtggacatcgagagcatttgtctactgattgatcttgttctggggccccaatttcgtgctcaggttgactcatttagtgagtttctcaagaatcagactgattataaggtgatcaacgtggatcaatggatgaattttcttcggttttgtcaagaggttagctttccagaccttgaaaactatgatctcgaccaagcatggcctgtgattttggataattttgttgagtggatgagagaaaaacaaaagtgatctgcgctgttgagttcttgtaaatgctaacgaaaagaatttgaagtgtgtgcacgggacttttgcttgcacgattcataacagctgcaccttcagcgggggaggctggttttctttctgctacagaactacaagcctgaggaggattcaacacatttctgtcgaaggggatatactaaaatttcttccttgaagaacgcttgtaggaacctttttaatttttcgtcttagttacaaacaaaatgtagctgctattttttctttgtccaacttcttgattttggaacttcactagtaacatagtgatatggatcatttgatccttatatggtagtcatacatgtgaatggaggttaaaaaaaacaatatgttgaagtgaaattgaatgtggtttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="71271" stop="68846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70959" g_stop="70876" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="100" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70875" i_stop="70782" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70781" g_stop="70721" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="161" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70720" i_stop="70595" i_length="126">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70594" g_stop="70488" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="268" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70487" i_stop="70293" i_length="195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.407" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70292" g_stop="70227" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="334" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70226" i_stop="69638" i_length="589">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69637" g_stop="69146" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="827" r_length="493" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E734613" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70959" e_stop="70876"/>
          <exon e_start="70781" e_stop="70721"/>
          <exon e_start="70594" e_stop="70488"/>
          <exon e_start="70292" e_stop="70227"/>
          <exon e_start="69637" e_stop="69146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAATGGAGAAAAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAGGTATGTTGTTGTCAGCTCTTTGGTTAACTTAAGTGGGATAATTTTGCAAGATCTAATGCTCATGTAGCTGACCTTGGATCATTTACATATTCAGGTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTGGTAAGCTTCTCTTTAATAAACAAATATGTAGCCTATTAGGTTTCATATTTTTTTGGATGTTTATGTCGCATTAATCTCTATTAAGCTAGAACATTTACTAATATGTGCCTGGTTTGTCTTTCTCAGAGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAGGTAGGTACTCACTTACATGTGAATATCTTTTGGTATCACATATGCATATTTTATGATATAATTGCCCGAAGGGCGCTAGTGTTTAGGCTTATAAACAGTTAGGAAAATTAAGTTATAACAATGATGTTAGTTTTTAATTTTTCATATCTTATTTAATTTGACACCGCTGATTCTCTGTCTTTTCCTTCATACTAGAATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAGGTAAACTATTTACGTTATATAATTAATTCTACCTTAGAAGGAAATATGGTTCGTGAAGCTCATATAGCCGACACCGGCTTAAAATATGTTCCATGTCTGCCTCTCTTTTCCTATTTTCGCTTTTTTTGGATTCTCCTTGCCATTTTCTAGTTTGCATTTTTTATTTGGCTGTCAATGACCTAAGCACTATATAAACACCAATCTCAAACTATGTAATTCAGGGTGATATGATTAGACGAATGGAACCAAATTGAAACTTATGCCAAACATTGAGGACCATACAAATAATTTTATCCTATATTGCCCACTTCTCATCTACCGAGTATTATGCAAATGCTAATCTAGTAGAACAAAAGACTTCACTTTACCTTTCTGGATCCTGCTTCTTTTGTTTCTATCAACTAATTTTCGTACTATGATCAGACACATACAGGAGCACCAATAATGGTACCTTTTGGTAAAGGGGGTTCAATTGAATCCCCTTAGCCGAAAAATTGTGCTGTGGAGAAAGGGTAGAAATAATAATTTTCTTGTATCGGATCTCCTTGACATAGGTCTAATAGCTGGCCATTCTTTTGTCTTTTTGAAGGTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGATTCATAACAGCTGCATCATTCAGC--GGGAGGCTGGTTTTCTTTCTGCTACAGAACTACAAGCCTGAGGAGGATTCAACACATTTCTGTCGAAGGGGATATACTAAAATTTCTTCCTTGAAGAACGCTTGTAGGAACCTTTTTAATTTTTCGTCTTAGTTACAAACGAAATGTAGCTGCTATTTTTTCTCTGTCCAACTTCTTGATTTTGGAACTTCACTAGTAACATAGTGATATGGATCATTTGATCCTTATATGGTAGTCATACATGTGAATGGAGGTTAAAAAAAACAATATGTTGAAGTGAAATTGAATGTGGTTTATT</genome_strand>
        <mrna_strand>GATGAATGGAGAAAAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAG..............................................................................................GTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTTCGTTACTGCCTTACTG..............................................................................................................................AGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAG...................................................................................................................................................................................................AATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCACGATTCATAACAGCTGCA-CCTTCAGCGGGGGAGGCTGGTTTTCTTTCTGCTACAGAACTACAAGCCTGAGGAGGATTCAACACATTTCTGTCGAAGGGGATATACTAAAATTTCTTCCTTGAAGAACGCTTGTAGGAACCTTTTTAATTTTTCGTCTTAGTTACAAACAAAATGTAGCTGCTATTTTTTCTTTGTCCAACTTCTTGATTTTGGAACTTCACTAGTAACATAGTGATATGGATCATTTGATCCTTATATGGTAGTCATACATGTGAATGGAGGTTAAAAAAAACAATATGTTGAAGTGAAATTGAATGTGGTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E285754" ref_strand="+" ref_description="SGN-E285754 [cLES-5-M21]">
      <seq>gaggataagcagaagtgtgtggacatcgagagcatttgtctactgattgatcttgttctggggccccaatttcgtgctcaggttgactcatttagtgagtttctcaagaatcagactgattataaggtgatcaacgtggatcaatggatgaattttcttcggttttgtcaagaggttagctttccagaccttgaaaactatgatctcgaccaagcatggcctgtgattttggataattttgttgagtggatgagagaaaaacaaaagtgatctgcgctgttgagttcttgtaaatgctaacgaaaagaatttgaagtgtgtgcacgggacttttgcttgcatgattcataacagctgcatcattcagcgggaggctggttttctttctgctacagaactacaagcctgaggaggattcaacacatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70895" stop="69084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70595" g_stop="70488" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70487" i_stop="70293" i_length="195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.407" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70292" g_stop="70227" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="174" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70226" i_stop="69638" i_length="589">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69637" g_stop="69384" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="428" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E285754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70595" e_stop="70488"/>
          <exon e_start="70292" e_stop="70227"/>
          <exon e_start="69637" e_stop="69384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAGGTAGGTACTCACTTACATGTGAATATCTTTTGGTATCACATATGCATATTTTATGATATAATTGCCCGAAGGGCGCTAGTGTTTAGGCTTATAAACAGTTAGGAAAATTAAGTTATAACAATGATGTTAGTTTTTAATTTTTCATATCTTATTTAATTTGACACCGCTGATTCTCTGTCTTTTCCTTCATACTAGAATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAGGTAAACTATTTACGTTATATAATTAATTCTACCTTAGAAGGAAATATGGTTCGTGAAGCTCATATAGCCGACACCGGCTTAAAATATGTTCCATGTCTGCCTCTCTTTTCCTATTTTCGCTTTTTTTGGATTCTCCTTGCCATTTTCTAGTTTGCATTTTTTATTTGGCTGTCAATGACCTAAGCACTATATAAACACCAATCTCAAACTATGTAATTCAGGGTGATATGATTAGACGAATGGAACCAAATTGAAACTTATGCCAAACATTGAGGACCATACAAATAATTTTATCCTATATTGCCCACTTCTCATCTACCGAGTATTATGCAAATGCTAATCTAGTAGAACAAAAGACTTCACTTTACCTTTCTGGATCCTGCTTCTTTTGTTTCTATCAACTAATTTTCGTACTATGATCAGACACATACAGGAGCACCAATAATGGTACCTTTTGGTAAAGGGGGTTCAATTGAATCCCCTTAGCCGAAAAATTGTGCTGTGGAGAAAGGGTAGAAATAATAATTTTCTTGTATCGGATCTCCTTGACATAGGTCTAATAGCTGGCCATTCTTTTGTCTTTTTGAAGGTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGATTCATAACAGCTGCATCATTCAGCGGGAGGCTGGTTTTCTTTCTGCTACAGAACTACAAGCCTGAGGAGGATTCAACACATTTC</genome_strand>
        <mrna_strand>GAGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAG...................................................................................................................................................................................................AATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGATTCATAACAGCTGCATCATTCAGCGGGAGGCTGGTTTTCTTTCTGCTACAGAACTACAAGCCTGAGGAGGATTCAACACATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E236474" ref_strand="+" ref_description="SGN-E236474 [cLED-13-D16]">
      <seq>aaggtttaaaagatctccaggttgatacgattaacaaattgaaaaaagccctgccaaaattggaagcagaggttatgatgcctgaaaattttgaggatttttattcctacgccttccgttactgccttactgaggataagcagaagtgtgtggacatcgagagcatttgtctactgattgatcttgttctggggccccaatttcgtgctcaggttgactcatttagtgagtttctcaagaatcagactgattataaggtgatcaacgtggatcaatggatgaattttcttcggttttgtcaagaggttagctttccagaccttgaaaactatgatctcgaccaagcatggcctgtgattttggataattttgttgagtggatgagagaaaaacaaaagtgatctgcgctgttgagttcttgtaaatgctaacgaaaagaatttgaagtgtgtgcacgggacttttgcttgcatgattcataacagctgcatcattcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="71246" stop="69145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70946" g_stop="70876" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70875" i_stop="70782" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70781" g_stop="70721" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="132" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70720" i_stop="70595" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70594" g_stop="70488" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="239" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70487" i_stop="70293" i_length="195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.407" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70292" g_stop="70227" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="305" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70226" i_stop="69638" i_length="589">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69637" g_stop="69445" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="498" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E236474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70946" e_stop="70876"/>
          <exon e_start="70781" e_stop="70721"/>
          <exon e_start="70594" e_stop="70488"/>
          <exon e_start="70292" e_stop="70227"/>
          <exon e_start="69637" e_stop="69445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAGGTATGTTGTTGTCAGCTCTTTGGTTAACTTAAGTGGGATAATTTTGCAAGATCTAATGCTCATGTAGCTGACCTTGGATCATTTACATATTCAGGTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTGGTAAGCTTCTCTTTAATAAACAAATATGTAGCCTATTAGGTTTCATATTTTTTTGGATGTTTATGTCGCATTAATCTCTATTAAGCTAGAACATTTACTAATATGTGCCTGGTTTGTCTTTCTCAGAGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAGGTAGGTACTCACTTACATGTGAATATCTTTTGGTATCACATATGCATATTTTATGATATAATTGCCCGAAGGGCGCTAGTGTTTAGGCTTATAAACAGTTAGGAAAATTAAGTTATAACAATGATGTTAGTTTTTAATTTTTCATATCTTATTTAATTTGACACCGCTGATTCTCTGTCTTTTCCTTCATACTAGAATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAGGTAAACTATTTACGTTATATAATTAATTCTACCTTAGAAGGAAATATGGTTCGTGAAGCTCATATAGCCGACACCGGCTTAAAATATGTTCCATGTCTGCCTCTCTTTTCCTATTTTCGCTTTTTTTGGATTCTCCTTGCCATTTTCTAGTTTGCATTTTTTATTTGGCTGTCAATGACCTAAGCACTATATAAACACCAATCTCAAACTATGTAATTCAGGGTGATATGATTAGACGAATGGAACCAAATTGAAACTTATGCCAAACATTGAGGACCATACAAATAATTTTATCCTATATTGCCCACTTCTCATCTACCGAGTATTATGCAAATGCTAATCTAGTAGAACAAAAGACTTCACTTTACCTTTCTGGATCCTGCTTCTTTTGTTTCTATCAACTAATTTTCGTACTATGATCAGACACATACAGGAGCACCAATAATGGTACCTTTTGGTAAAGGGGGTTCAATTGAATCCCCTTAGCCGAAAAATTGTGCTGTGGAGAAAGGGTAGAAATAATAATTTTCTTGTATCGGATCTCCTTGACATAGGTCTAATAGCTGGCCATTCTTTTGTCTTTTTGAAGGTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGATTCATAACAGCTGCATCATTCAG</genome_strand>
        <mrna_strand>AAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAG..............................................................................................GTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTG..............................................................................................................................AGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAG...................................................................................................................................................................................................AATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGATTCATAACAGCTGCATCATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E271676" ref_strand="+" ref_description="SGN-E271676 [cLEM-23-D11]">
      <seq>agaagtatgccaataagctgctaggcatgatcgatccagaggggattgaggcactttgctcagatcttggagtagactacacaaatgtcaaaattttgatgctcgcttggaaattgaaagctgaaaagcagggatattttactcaggatgaatggagaaaaggtttaaaagatctccaggttgatacgattaacaaattgaaaaaagccctgccaaaattggaagcagaggttatgatgcctgaaaattttgaggatttttattcctacgccttccgttactgccttactgaggataagcagaagtgtgtggacatcgagagcatttgtctactgattgatcttgttctggggccccaatttcgtgctcaggttgactcatttagtgagtttctcaagaatcagactgattataaggtgatcaacgtggatcaatggatgaattttcttcggttttgtcaagagctttccagaccttgaaaactatgatctcgaccaagcatggcctgtgattttggataattttgttgagtggatgagagaaaaacaaaagtgatctgcgctgttgagttcttgtaaatgctaacgaaaagaatttgaagtgtgtgcacgggacttttgcttgcatgattcataacagctgcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="73321" stop="69149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73021" g_stop="72988" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72987" i_stop="71818" i_length="1170">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71817" g_stop="71743" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="109" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71742" i_stop="71642" i_length="101">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71641" g_stop="71605" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="146" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71604" i_stop="70960" i_length="645">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70959" g_stop="70876" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="230" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70875" i_stop="70782" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70781" g_stop="70721" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="291" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70720" i_stop="70595" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70594" g_stop="70488" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="398" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70487" i_stop="70293" i_length="195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.407" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70292" g_stop="70227" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="464" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70226" i_stop="69633" i_length="594">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69632" g_stop="69449" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="648" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E271676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73021" e_stop="72988"/>
          <exon e_start="71817" e_stop="71743"/>
          <exon e_start="71641" e_stop="71605"/>
          <exon e_start="70959" e_stop="70876"/>
          <exon e_start="70781" e_stop="70721"/>
          <exon e_start="70594" e_stop="70488"/>
          <exon e_start="70292" e_stop="70227"/>
          <exon e_start="69632" e_stop="69449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTATGCCAATAAGCTGCTAGGCATGATCGAGTGAGTTCCTTTTTTCAATAGTTAATCTATTGTTCCTATGTTTCTTTTCATGAACTTTGTGATTAAATGGTATGTATAGAGCAACTCTACAAGTTATTTTTCCAAGTTTTTCCACTTTACCAAACTAAGTTGCATATATGCTGATTGTTTTGATCCATATTTACCTAGCTGAACAGTGGATATATGATCGTCTCCAGGGTCATACACATGGTTAACATAGTCTTCCTTCTGTGCATATATCTTCTGTAGCTACAGGAGTTGTTTGTTTCTGCTGCAGTTCTGCTACTGCAAAAGTTGAGTGAATGTCAATGTTCATATGTTTCATGTGAATGGGTTGTTAACTAGCATAGAATTTACTCATATAAAACAAATACTAACATTAAACTATGATGGAAGTCACTGTGTGTTTTACTATTTGTTGCTCTGATTGGATCATATCACTGAGGGAAATTCTATGAGTAGGAAACGGTTTGGTGGTTTTAATTCCTTAATACTTTGAATTTTTCAACGGTTTCTACCAAGTTGCTATACCATTTATTTCCATGCTAAAGGTCATTGCTATCAATACAAATGCCTAAAAGAACTGATTTGATGGAAGTGATAGCTGAAAATTATGTCATTCTGAGGATTTTATCTGGCAGTATCTTGTTTTGATTCGTAATTTTGTGAAACCAAGCTTGCTTAAAATAGATGTGCTTGATTAGCAATATTAATATGGTCTACTCGCATCAAGTAGTTGTTGGTCCTGTCAACTAGGCATATTAGCTTACTGTAAAACTTTATAGTTCCTTTGAATATCAGACTTACCTCTTATTATTTTCTTCTTTTAGCACAAGTACATTCTGATAAATATCTAGTTTTAGAATATCTCAAAGTTTAATAACACGCTGTAAACAATGCCGACCTAAAGAGAAAAGGTTTCAATAAAACTACAGTTATCCATCAAGTAAGTCTTTCCTTCTATTGAAATGTCAGTATAATTTTTTAGAGTTCTAATTCATTTATCCTAACATTGAACTGAAATGTGATAACTTTATGAACGAAGCTTTTAACGATTGATGGAGTTAAGGTATCAGAGGGAGATTTTGTCATTACTATCATTCTATTAGTGTTTGAAAGTAAAGGATTTTGGAATCTTTGTTAATCTTCTGTTTGTTTTTGTGTGCACAGTCCAGAGGGGATTGAGGCACTTTGCTCAGATCTTGGAGTAGACTACACAAATGTCAAAATTTTGATGCTCGCTTGGTAAGCCATTTGCTGTCAATATGTGTCTATGTGATCAATAATTTATTTTAAGGAAATGTTGTGTCTCTTAATCTATATAACTCACTATTCACATGGATCAGGAAATTGAAAGCTGAAAAGCAGGGATATTTTACTCAGGTAAGATACTGCTATTTATTTGTTCAGCTTCCTCTTGAGTATAAACTAGGGGTTGCCAAATTAACCCATAAGAACATGATCTGCACAACCTGTTCAAGTTTGGTCTGATCATTGACACCGTCATTTATTAGCTCAACCTATTTCAAGCCATCTGAAAAATGAGCTTGATATGTACTCCAAATTGACATAAAAATCTCGCTAAAATATTTTCAAAAAGATAATTCTTTATTTGATATGTTATATATAGTCATAATAAAGGAGAAAATAGTGTTATTAGGCACTTAAAAAGTTATAAAAGAACAAAAATGAAACTAGAACATACTAAGAGTTGGGCAGCTTGGGATATGACCCGGGTTTTAGCCCATTTTTAGCACAAGTAACTTGTGGGCGGGTAATCCAGCCCAATCCACCCATTTTGACACCCCTAGTATAAGACATTTCAATGTGTTCTCTTTTGTGATGTATTCATTAGGATGATGTACTGTTATAATTGTCTGGTGGTTGATCCTTTTCTGTTTGTCAGTGTTTTGCTTTGTTCTTTTTGTTGATACAACTACATTCTCATTCGAGTTGACTTTAGCATTTGCTCTTGGATCAATATAGTGCATTTTTCCTCTGTGACGGAAAATCTTTTCTAATTGTCAGGATGAATGGAGAAAAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAGGTATGTTGTTGTCAGCTCTTTGGTTAACTTAAGTGGGATAATTTTGCAAGATCTAATGCTCATGTAGCTGACCTTGGATCATTTACATATTCAGGTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTGGTAAGCTTCTCTTTAATAAACAAATATGTAGCCTATTAGGTTTCATATTTTTTTGGATGTTTATGTCGCATTAATCTCTATTAAGCTAGAACATTTACTAATATGTGCCTGGTTTGTCTTTCTCAGAGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAGGTAGGTACTCACTTACATGTGAATATCTTTTGGTATCACATATGCATATTTTATGATATAATTGCCCGAAGGGCGCTAGTGTTTAGGCTTATAAACAGTTAGGAAAATTAAGTTATAACAATGATGTTAGTTTTTAATTTTTCATATCTTATTTAATTTGACACCGCTGATTCTCTGTCTTTTCCTTCATACTAGAATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAGGTAAACTATTTACGTTATATAATTAATTCTACCTTAGAAGGAAATATGGTTCGTGAAGCTCATATAGCCGACACCGGCTTAAAATATGTTCCATGTCTGCCTCTCTTTTCCTATTTTCGCTTTTTTTGGATTCTCCTTGCCATTTTCTAGTTTGCATTTTTTATTTGGCTGTCAATGACCTAAGCACTATATAAACACCAATCTCAAACTATGTAATTCAGGGTGATATGATTAGACGAATGGAACCAAATTGAAACTTATGCCAAACATTGAGGACCATACAAATAATTTTATCCTATATTGCCCACTTCTCATCTACCGAGTATTATGCAAATGCTAATCTAGTAGAACAAAAGACTTCACTTTACCTTTCTGGATCCTGCTTCTTTTGTTTCTATCAACTAATTTTCGTACTATGATCAGACACATACAGGAGCACCAATAATGGTACCTTTTGGTAAAGGGGGTTCAATTGAATCCCCTTAGCCGAAAAATTGTGCTGTGGAGAAAGGGTAGAAATAATAATTTTCTTGTATCGGATCTCCTTGACATAGGTCTAATAGCTGGCCATTCTTTTGTCTTTTTGAAGGTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGATTCATAACAGCTGCATCAT</genome_strand>
        <mrna_strand>AGAAGTATGCCAATAAGCTGCTAGGCATGATCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAGGGGATTGAGGCACTTTGCTCAGATCTTGGAGTAGACTACACAAATGTCAAAATTTTGATGCTCGCTTG.....................................................................................................GAAATTGAAAGCTGAAAAGCAGGGATATTTTACTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATGGAGAAAAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAG..............................................................................................GTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTG..............................................................................................................................AGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAG...................................................................................................................................................................................................AATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGATTCATAACAGCTGCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E241626" ref_strand="+" ref_description="SGN-E241626 [cLED-36-F15]">
      <seq>aaggtttaaaagatctccaggttgatacgattaacaaattgaaaaaagccctgccaaaattggaagcagaggttatgatgcctgaaaattttgaggatttttattcctacgccttccgttactgccttactgaggataagcagaagtgtgtggacatcgagagcatttgtctactgattgatcttgttctggggccccaatttcgtgctcaggttgactcatttagtgagtttctcaagaatcagactgattataaggtgatcaacgtggatcaatggatgaattttcttcggttttgtcaagaggttagctttccagaccttgaaaactatgatctcgaccaagcatggcctgtgattttggataattttgttgagtggatgagagaaaaacaaaagtgatctgcgctgttgagttcttgtaaatgctaacgaaaagaatttgaagtgtgtgcacgggacttttgcttgcatgattcataacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="71246" stop="69157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70946" g_stop="70876" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70875" i_stop="70782" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70781" g_stop="70721" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="132" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70720" i_stop="70595" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70594" g_stop="70488" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="239" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70487" i_stop="70293" i_length="195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.407" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70292" g_stop="70227" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="305" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70226" i_stop="69638" i_length="589">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69637" g_stop="69457" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="486" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E241626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70946" e_stop="70876"/>
          <exon e_start="70781" e_stop="70721"/>
          <exon e_start="70594" e_stop="70488"/>
          <exon e_start="70292" e_stop="70227"/>
          <exon e_start="69637" e_stop="69457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAGGTATGTTGTTGTCAGCTCTTTGGTTAACTTAAGTGGGATAATTTTGCAAGATCTAATGCTCATGTAGCTGACCTTGGATCATTTACATATTCAGGTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTGGTAAGCTTCTCTTTAATAAACAAATATGTAGCCTATTAGGTTTCATATTTTTTTGGATGTTTATGTCGCATTAATCTCTATTAAGCTAGAACATTTACTAATATGTGCCTGGTTTGTCTTTCTCAGAGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAGGTAGGTACTCACTTACATGTGAATATCTTTTGGTATCACATATGCATATTTTATGATATAATTGCCCGAAGGGCGCTAGTGTTTAGGCTTATAAACAGTTAGGAAAATTAAGTTATAACAATGATGTTAGTTTTTAATTTTTCATATCTTATTTAATTTGACACCGCTGATTCTCTGTCTTTTCCTTCATACTAGAATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAGGTAAACTATTTACGTTATATAATTAATTCTACCTTAGAAGGAAATATGGTTCGTGAAGCTCATATAGCCGACACCGGCTTAAAATATGTTCCATGTCTGCCTCTCTTTTCCTATTTTCGCTTTTTTTGGATTCTCCTTGCCATTTTCTAGTTTGCATTTTTTATTTGGCTGTCAATGACCTAAGCACTATATAAACACCAATCTCAAACTATGTAATTCAGGGTGATATGATTAGACGAATGGAACCAAATTGAAACTTATGCCAAACATTGAGGACCATACAAATAATTTTATCCTATATTGCCCACTTCTCATCTACCGAGTATTATGCAAATGCTAATCTAGTAGAACAAAAGACTTCACTTTACCTTTCTGGATCCTGCTTCTTTTGTTTCTATCAACTAATTTTCGTACTATGATCAGACACATACAGGAGCACCAATAATGGTACCTTTTGGTAAAGGGGGTTCAATTGAATCCCCTTAGCCGAAAAATTGTGCTGTGGAGAAAGGGTAGAAATAATAATTTTCTTGTATCGGATCTCCTTGACATAGGTCTAATAGCTGGCCATTCTTTTGTCTTTTTGAAGGTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGATTCATAACAGC</genome_strand>
        <mrna_strand>AAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAG..............................................................................................GTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTG..............................................................................................................................AGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAG...................................................................................................................................................................................................AATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGATTCATAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E242236" ref_strand="+" ref_description="SGN-E242236 [cLED-37-B20]">
      <seq>aaggtttaaaagatctccaggttgatacgattaacaaattgaaaaaagccctgccaaaattggaagcagaggttatgatgcctgaaaattttgaggatttttattcctacgccttccgttactgccttactgaggataagcagaagtgtgtggacatcgagagcatttgtctactgattgatcttgttctggggccccaatttcgtgctcaggttgactcatttagtgagtttctcaagaatcagactgattataaggtgatcaacgtggatcaatggatgaattttcttcggttttgtcaagaggttagctttccagaccttgaaaactatgatctcgaccaagcatggcctgtgattctggataattttgttgagtggatgagagaaaaacaaaagtgatctgcgctgttgagttcttgtaaatgctaacgaaaagaatttgaagtgtgtgcacgggacttttgcttgcatgattcataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="71246" stop="69161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70946" g_stop="70876" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70875" i_stop="70782" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70781" g_stop="70721" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="132" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70720" i_stop="70595" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70594" g_stop="70488" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="239" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70487" i_stop="70293" i_length="195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.407" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70292" g_stop="70227" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="305" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70226" i_stop="69638" i_length="589">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69637" g_stop="69461" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="482" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E242236" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70946" e_stop="70876"/>
          <exon e_start="70781" e_stop="70721"/>
          <exon e_start="70594" e_stop="70488"/>
          <exon e_start="70292" e_stop="70227"/>
          <exon e_start="69637" e_stop="69461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAGGTATGTTGTTGTCAGCTCTTTGGTTAACTTAAGTGGGATAATTTTGCAAGATCTAATGCTCATGTAGCTGACCTTGGATCATTTACATATTCAGGTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTGGTAAGCTTCTCTTTAATAAACAAATATGTAGCCTATTAGGTTTCATATTTTTTTGGATGTTTATGTCGCATTAATCTCTATTAAGCTAGAACATTTACTAATATGTGCCTGGTTTGTCTTTCTCAGAGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAGGTAGGTACTCACTTACATGTGAATATCTTTTGGTATCACATATGCATATTTTATGATATAATTGCCCGAAGGGCGCTAGTGTTTAGGCTTATAAACAGTTAGGAAAATTAAGTTATAACAATGATGTTAGTTTTTAATTTTTCATATCTTATTTAATTTGACACCGCTGATTCTCTGTCTTTTCCTTCATACTAGAATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAGGTAAACTATTTACGTTATATAATTAATTCTACCTTAGAAGGAAATATGGTTCGTGAAGCTCATATAGCCGACACCGGCTTAAAATATGTTCCATGTCTGCCTCTCTTTTCCTATTTTCGCTTTTTTTGGATTCTCCTTGCCATTTTCTAGTTTGCATTTTTTATTTGGCTGTCAATGACCTAAGCACTATATAAACACCAATCTCAAACTATGTAATTCAGGGTGATATGATTAGACGAATGGAACCAAATTGAAACTTATGCCAAACATTGAGGACCATACAAATAATTTTATCCTATATTGCCCACTTCTCATCTACCGAGTATTATGCAAATGCTAATCTAGTAGAACAAAAGACTTCACTTTACCTTTCTGGATCCTGCTTCTTTTGTTTCTATCAACTAATTTTCGTACTATGATCAGACACATACAGGAGCACCAATAATGGTACCTTTTGGTAAAGGGGGTTCAATTGAATCCCCTTAGCCGAAAAATTGTGCTGTGGAGAAAGGGTAGAAATAATAATTTTCTTGTATCGGATCTCCTTGACATAGGTCTAATAGCTGGCCATTCTTTTGTCTTTTTGAAGGTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGATTCATAA</genome_strand>
        <mrna_strand>AAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAG..............................................................................................GTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTG..............................................................................................................................AGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAG...................................................................................................................................................................................................AATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTCTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGATTCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E310777" ref_strand="+" ref_description="SGN-E310777 [cLEZ-15-N23]">
      <seq>actacacaaatgtcaaaattttgatgctcgcttggaaattgaaagctgaaaagcagggatattttactcaggatgaatggagaaaaggtttgaaagatctccacgttgatacgattaacaaattgaaaaaagccctgccaaaattggaagcagaagttatgatgcctgaaaattttgaggatttttattcctacgccttccgttactgccttactgaggataagcagaagtgtgtggacatcgagagcatttgtctactgattgatcttgttctggggccccaatttcgtgctcaagttgactcatttagtgagtttctcaagaatcagactgattataaggtgatcaacgtggatcaatggatgaattttcttcggttttgtcaagaggttagctttgcagaccttgaaaactatgatctcgaccaagcatggcctgtgattttggataattttgttgagtggatgagagaaaaacataagtgatctgcgctgttgagttcttgttaatgctgacgaaaagaatttgaagtgtgtgcacgggacttttgcttgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="72076" stop="69168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71776" g_stop="71743" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71742" i_stop="71642" i_length="101">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71641" g_stop="71605" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="71" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71604" i_stop="70960" i_length="645">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70959" g_stop="70876" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="155" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70875" i_stop="70782" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70781" g_stop="70721" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="216" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70720" i_stop="70595" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70594" g_stop="70488" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="323" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70487" i_stop="70293" i_length="195">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.407" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70292" g_stop="70227" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="389" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70226" i_stop="69638" i_length="589">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69637" g_stop="69468" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="559" r_length="170" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E310777" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71776" e_stop="71743"/>
          <exon e_start="71641" e_stop="71605"/>
          <exon e_start="70959" e_stop="70876"/>
          <exon e_start="70781" e_stop="70721"/>
          <exon e_start="70594" e_stop="70488"/>
          <exon e_start="70292" e_stop="70227"/>
          <exon e_start="69637" e_stop="69468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACACAAATGTCAAAATTTTGATGCTCGCTTGGTAAGCCATTTGCTGTCAATATGTGTCTATGTGATCAATAATTTATTTTAAGGAAATGTTGTGTCTCTTAATCTATATAACTCACTATTCACATGGATCAGGAAATTGAAAGCTGAAAAGCAGGGATATTTTACTCAGGTAAGATACTGCTATTTATTTGTTCAGCTTCCTCTTGAGTATAAACTAGGGGTTGCCAAATTAACCCATAAGAACATGATCTGCACAACCTGTTCAAGTTTGGTCTGATCATTGACACCGTCATTTATTAGCTCAACCTATTTCAAGCCATCTGAAAAATGAGCTTGATATGTACTCCAAATTGACATAAAAATCTCGCTAAAATATTTTCAAAAAGATAATTCTTTATTTGATATGTTATATATAGTCATAATAAAGGAGAAAATAGTGTTATTAGGCACTTAAAAAGTTATAAAAGAACAAAAATGAAACTAGAACATACTAAGAGTTGGGCAGCTTGGGATATGACCCGGGTTTTAGCCCATTTTTAGCACAAGTAACTTGTGGGCGGGTAATCCAGCCCAATCCACCCATTTTGACACCCCTAGTATAAGACATTTCAATGTGTTCTCTTTTGTGATGTATTCATTAGGATGATGTACTGTTATAATTGTCTGGTGGTTGATCCTTTTCTGTTTGTCAGTGTTTTGCTTTGTTCTTTTTGTTGATACAACTACATTCTCATTCGAGTTGACTTTAGCATTTGCTCTTGGATCAATATAGTGCATTTTTCCTCTGTGACGGAAAATCTTTTCTAATTGTCAGGATGAATGGAGAAAAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAGGTATGTTGTTGTCAGCTCTTTGGTTAACTTAAGTGGGATAATTTTGCAAGATCTAATGCTCATGTAGCTGACCTTGGATCATTTACATATTCAGGTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTGGTAAGCTTCTCTTTAATAAACAAATATGTAGCCTATTAGGTTTCATATTTTTTTGGATGTTTATGTCGCATTAATCTCTATTAAGCTAGAACATTTACTAATATGTGCCTGGTTTGTCTTTCTCAGAGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAGGTAGGTACTCACTTACATGTGAATATCTTTTGGTATCACATATGCATATTTTATGATATAATTGCCCGAAGGGCGCTAGTGTTTAGGCTTATAAACAGTTAGGAAAATTAAGTTATAACAATGATGTTAGTTTTTAATTTTTCATATCTTATTTAATTTGACACCGCTGATTCTCTGTCTTTTCCTTCATACTAGAATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAGGTAAACTATTTACGTTATATAATTAATTCTACCTTAGAAGGAAATATGGTTCGTGAAGCTCATATAGCCGACACCGGCTTAAAATATGTTCCATGTCTGCCTCTCTTTTCCTATTTTCGCTTTTTTTGGATTCTCCTTGCCATTTTCTAGTTTGCATTTTTTATTTGGCTGTCAATGACCTAAGCACTATATAAACACCAATCTCAAACTATGTAATTCAGGGTGATATGATTAGACGAATGGAACCAAATTGAAACTTATGCCAAACATTGAGGACCATACAAATAATTTTATCCTATATTGCCCACTTCTCATCTACCGAGTATTATGCAAATGCTAATCTAGTAGAACAAAAGACTTCACTTTACCTTTCTGGATCCTGCTTCTTTTGTTTCTATCAACTAATTTTCGTACTATGATCAGACACATACAGGAGCACCAATAATGGTACCTTTTGGTAAAGGGGGTTCAATTGAATCCCCTTAGCCGAAAAATTGTGCTGTGGAGAAAGGGTAGAAATAATAATTTTCTTGTATCGGATCTCCTTGACATAGGTCTAATAGCTGGCCATTCTTTTGTCTTTTTGAAGGTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGA</genome_strand>
        <mrna_strand>ACTACACAAATGTCAAAATTTTGATGCTCGCTTG.....................................................................................................GAAATTGAAAGCTGAAAAGCAGGGATATTTTACTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATGGAGAAAAGGTTTGAAAGATCTCCACGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAA..............................................................................................GTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTG..............................................................................................................................AGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAAGTTGACTCATTTAGTGAGTTTCTCAAG...................................................................................................................................................................................................AATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTGCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACATAAGTGATCTGCGCTGTTGAGTTCTTGTTAATGCTGACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E577689" ref_strand="+" ref_description="SGN-E577689 [LE15BH03]">
      <seq>tttcaaaattgtaccaaaatgcctcgagcatcaaagagaaaatctgacacacccaaatctacttctgtcaaatctgctcgctcggagtctatcacaactgcttcaagcaagactacgaagtttggattgtccgttgataatctttttcagaagtatgccaataagctgctaggcatgatcgatccagaggggattgaggcactttgctcagatcttggagtagactatacaaatgtcaaaattttgatgctcgcttggaaattgaaagctgaaaagcagggatattttactcaggatgaatggagaaaaggtttaaaagatctccaggttgatacgattaacaaattgaaaaaagccctgccaaaattggaagcagaggttatgatgcctgaaaattttgaggatttttattcctacgcctttcgttactgccttactgaggataagcagaagtgtgtggacatcgagagcatttgtctactgattgatcttgttctggggccccaatttcgtgctcaggttgactcatttagtgagtttctcaagaatcagactgattataaggtgatcaacgtggatcaatggatgaattttcttcggttntgtcaagaggttagctttccagaccttgaaaactatgatctcgaccaagcatggcctgtgattntggataantttgttgagtggatgagagaaaacaaaagtgatctgcgctgttgagttcttgaaatgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="74715" stop="69212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74415" g_stop="74316" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74315" i_stop="73070" i_length="1246">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73069" g_stop="72988" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="182" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72987" i_stop="71818" i_length="1170">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71817" g_stop="71743" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="257" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71742" i_stop="71642" i_length="101">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71641" g_stop="71605" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="294" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71604" i_stop="70960" i_length="645">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70959" g_stop="70876" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="378" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70875" i_stop="70782" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70781" g_stop="70721" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="439" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70720" i_stop="70595" i_length="126">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70594" g_stop="70488" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="546" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70487" i_stop="70293" i_length="195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.407" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70292" g_stop="70227" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="612" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="70226" i_stop="69638" i_length="589">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="69637" g_stop="69512" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="736" r_length="124" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E577689" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74415" e_stop="74316"/>
          <exon e_start="73069" e_stop="72988"/>
          <exon e_start="71817" e_stop="71743"/>
          <exon e_start="71641" e_stop="71605"/>
          <exon e_start="70959" e_stop="70876"/>
          <exon e_start="70781" e_stop="70721"/>
          <exon e_start="70594" e_stop="70488"/>
          <exon e_start="70292" e_stop="70227"/>
          <exon e_start="69637" e_stop="69512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAAATTGCACCAAAATGCCTCGAGCATCAAAGAGAAAATCTGACACCCCCAAATCTACTTCTGTCAAATCTGCTCGCTCGGAGTCTATCACAACTGGTAAATTCTTGTTTTATTTTGGCCCTTTGTGATGTATCCTATCTATGTGATTTAGTTGTTGGTATTGTTCATTTGAACTTTTTTGATTCTTTTTTTTGGGGGGGTTTGTTTCTTAGTGATGAGGGGTATTTTAAAGTTCAAATTTTGTTTAATGAGTTGGGGCTAATCTAGATTTTGGAGCCTTGAAATGAGATTTGGGGATTTGGGTATCAAGAATAAGAAAAAAATTACTTTTTTGCACTTAAAGGGTGTGGCTTAACTGGTAATGAAGAGGGTAAGAGATGCGCGCAAGCTAGGTTCGATGCCACTTTTGTTATTAAAAAAAATAATTTAAGTGTTTTTGGGTTGTTGCATTGATATCAAGTGGCTGTTTTTCTATATTGGAAAACAAAATGAGTGGGTTGGATGTAGAGGAGGCACGCAAGGGCGTGGTCTAGTGGTCAATGAAGTGGGTGAGAACTGTGGGGTTTTGAGGTTCAAATTTCAGCAGAGACAAAAACCATTTCTTTACATCTGTCGTAGGCTTTGGTGGATAGAGTTATCTAGTATATGTATTGCATTTAAAATCAAGTGGTCTGGAATAAAATGGGCCTGAATGGATATAAAGGATTGATAGAGCTGAGTTTGGAATTTGAGTCTTAGTTGAATAATTGATCTATGTTAAGGGAGGTGTTGGATGCTTATGCCGATCTTAGATAAGTATGTGCCTCACCATGTATACTGTGATTGGAATTTCTAAAGGAAGTATAAGATTCAACCTGCATTGTTTTTCTTAATCCCTTGTTTGGATACATCTCGAAATTAGGTAAATTAAAATGTTCGAAGACACAATGCAGATAAATACTCTTTTAATCGAGTTTTTGTAGGCTTGTTTGAGATAAAATTTGTAGCTTTCTCTCTAGCTCTGCCCATGTCCTAAATCTATATTTGAATAGATATATTTATCACGCTTGAACTTCAGTAGTCCCAAATTGTTTCTGTTTTGGATGTTCCACCATATAAATGTTGTCTATCTTAATTTGCAAGTTCATCTTTTTATGAAATTTTGTTAACAATGTTGAAGACCAAGCGATGTGGTGTTTTGACTTTAAATAATGTTTCTTTTTTCATGAAATATATTTTTTCTAGCTGGATGTTTGCAATTTTCTATTTCTTTTTATTTTCTCCTCTTTATGGTCAACGTGTTTCAGTTATATTTACTTTGCCTTCACCTATAGTATCCTGAAAGATTCGTTGTTCTATTCAGCTTCAAGCAAGACTACGAAGTTTGGATTGTCCGTTGATAATCTTTTTCAGAAGTATGCCAATAAGCTGCTAGGCATGATCGAGTGAGTTCCTTTTTTCAATAGTTAATCTATTGTTCCTATGTTTCTTTTCATGAACTTTGTGATTAAATGGTATGTATAGAGCAACTCTACAAGTTATTTTTCCAAGTTTTTCCACTTTACCAAACTAAGTTGCATATATGCTGATTGTTTTGATCCATATTTACCTAGCTGAACAGTGGATATATGATCGTCTCCAGGGTCATACACATGGTTAACATAGTCTTCCTTCTGTGCATATATCTTCTGTAGCTACAGGAGTTGTTTGTTTCTGCTGCAGTTCTGCTACTGCAAAAGTTGAGTGAATGTCAATGTTCATATGTTTCATGTGAATGGGTTGTTAACTAGCATAGAATTTACTCATATAAAACAAATACTAACATTAAACTATGATGGAAGTCACTGTGTGTTTTACTATTTGTTGCTCTGATTGGATCATATCACTGAGGGAAATTCTATGAGTAGGAAACGGTTTGGTGGTTTTAATTCCTTAATACTTTGAATTTTTCAACGGTTTCTACCAAGTTGCTATACCATTTATTTCCATGCTAAAGGTCATTGCTATCAATACAAATGCCTAAAAGAACTGATTTGATGGAAGTGATAGCTGAAAATTATGTCATTCTGAGGATTTTATCTGGCAGTATCTTGTTTTGATTCGTAATTTTGTGAAACCAAGCTTGCTTAAAATAGATGTGCTTGATTAGCAATATTAATATGGTCTACTCGCATCAAGTAGTTGTTGGTCCTGTCAACTAGGCATATTAGCTTACTGTAAAACTTTATAGTTCCTTTGAATATCAGACTTACCTCTTATTATTTTCTTCTTTTAGCACAAGTACATTCTGATAAATATCTAGTTTTAGAATATCTCAAAGTTTAATAACACGCTGTAAACAATGCCGACCTAAAGAGAAAAGGTTTCAATAAAACTACAGTTATCCATCAAGTAAGTCTTTCCTTCTATTGAAATGTCAGTATAATTTTTTAGAGTTCTAATTCATTTATCCTAACATTGAACTGAAATGTGATAACTTTATGAACGAAGCTTTTAACGATTGATGGAGTTAAGGTATCAGAGGGAGATTTTGTCATTACTATCATTCTATTAGTGTTTGAAAGTAAAGGATTTTGGAATCTTTGTTAATCTTCTGTTTGTTTTTGTGTGCACAGTCCAGAGGGGATTGAGGCACTTTGCTCAGATCTTGGAGTAGACTACACAAATGTCAAAATTTTGATGCTCGCTTGGTAAGCCATTTGCTGTCAATATGTGTCTATGTGATCAATAATTTATTTTAAGGAAATGTTGTGTCTCTTAATCTATATAACTCACTATTCACATGGATCAGGAAATTGAAAGCTGAAAAGCAGGGATATTTTACTCAGGTAAGATACTGCTATTTATTTGTTCAGCTTCCTCTTGAGTATAAACTAGGGGTTGCCAAATTAACCCATAAGAACATGATCTGCACAACCTGTTCAAGTTTGGTCTGATCATTGACACCGTCATTTATTAGCTCAACCTATTTCAAGCCATCTGAAAAATGAGCTTGATATGTACTCCAAATTGACATAAAAATCTCGCTAAAATATTTTCAAAAAGATAATTCTTTATTTGATATGTTATATATAGTCATAATAAAGGAGAAAATAGTGTTATTAGGCACTTAAAAAGTTATAAAAGAACAAAAATGAAACTAGAACATACTAAGAGTTGGGCAGCTTGGGATATGACCCGGGTTTTAGCCCATTTTTAGCACAAGTAACTTGTGGGCGGGTAATCCAGCCCAATCCACCCATTTTGACACCCCTAGTATAAGACATTTCAATGTGTTCTCTTTTGTGATGTATTCATTAGGATGATGTACTGTTATAATTGTCTGGTGGTTGATCCTTTTCTGTTTGTCAGTGTTTTGCTTTGTTCTTTTTGTTGATACAACTACATTCTCATTCGAGTTGACTTTAGCATTTGCTCTTGGATCAATATAGTGCATTTTTCCTCTGTGACGGAAAATCTTTTCTAATTGTCAGGATGAATGGAGAAAAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAGGTATGTTGTTGTCAGCTCTTTGGTTAACTTAAGTGGGATAATTTTGCAAGATCTAATGCTCATGTAGCTGACCTTGGATCATTTACATATTCAGGTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTGGTAAGCTTCTCTTTAATAAACAAATATGTAGCCTATTAGGTTTCATATTTTTTTGGATGTTTATGTCGCATTAATCTCTATTAAGCTAGAACATTTACTAATATGTGCCTGGTTTGTCTTTCTCAGAGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAGGTAGGTACTCACTTACATGTGAATATCTTTTGGTATCACATATGCATATTTTATGATATAATTGCCCGAAGGGCGCTAGTGTTTAGGCTTATAAACAGTTAGGAAAATTAAGTTATAACAATGATGTTAGTTTTTAATTTTTCATATCTTATTTAATTTGACACCGCTGATTCTCTGTCTTTTCCTTCATACTAGAATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAGGTAAACTATTTACGTTATATAATTAATTCTACCTTAGAAGGAAATATGGTTCGTGAAGCTCATATAGCCGACACCGGCTTAAAATATGTTCCATGTCTGCCTCTCTTTTCCTATTTTCGCTTTTTTTGGATTCTCCTTGCCATTTTCTAGTTTGCATTTTTTATTTGGCTGTCAATGACCTAAGCACTATATAAACACCAATCTCAAACTATGTAATTCAGGGTGATATGATTAGACGAATGGAACCAAATTGAAACTTATGCCAAACATTGAGGACCATACAAATAATTTTATCCTATATTGCCCACTTCTCATCTACCGAGTATTATGCAAATGCTAATCTAGTAGAACAAAAGACTTCACTTTACCTTTCTGGATCCTGCTTCTTTTGTTTCTATCAACTAATTTTCGTACTATGATCAGACACATACAGGAGCACCAATAATGGTACCTTTTGGTAAAGGGGGTTCAATTGAATCCCCTTAGCCGAAAAATTGTGCTGTGGAGAAAGGGTAGAAATAATAATTTTCTTGTATCGGATCTCCTTGACATAGGTCTAATAGCTGGCCATTCTTTTGTCTTTTTGAAGGTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAA</genome_strand>
        <mrna_strand>TTTCAAAATTGTACCAAAATGCCTCGAGCATCAAAGAGAAAATCTGACACACCCAAATCTACTTCTGTCAAATCTGCTCGCTCGGAGTCTATCACAACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAGCAAGACTACGAAGTTTGGATTGTCCGTTGATAATCTTTTTCAGAAGTATGCCAATAAGCTGCTAGGCATGATCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAGGGGATTGAGGCACTTTGCTCAGATCTTGGAGTAGACTATACAAATGTCAAAATTTTGATGCTCGCTTG.....................................................................................................GAAATTGAAAGCTGAAAAGCAGGGATATTTTACTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATGGAGAAAAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAG..............................................................................................GTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTTCGTTACTGCCTTACTG..............................................................................................................................AGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAG...................................................................................................................................................................................................AATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTNTGTCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTNTGGATAANTTTGTTGAGTGGATGAGAG-AAAACAAAAGTGATCTGCGCTGTTGAGTTCTTG-AAATGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E243829" ref_strand="+" ref_description="SGN-E243829 [cLED-35-C5]">
      <seq>gatctccattttgatacgattaacaaattgaaaaaagccctgccaaaattggaagcagaggttatgatgcctgaaaattttgaggatttttattcctacgccttccgttactgccttactgaggataagcagaagtgtgtggacatcgagagcatttgtctactgattgatcttgttctggggccccaatttcgtgctcaggttgactcatttagtgagtttctcaagaatcagactgattataaggtgatcaacgtggatcaatggatgaattttcttccgttttgtcaagaggttagctttccagaccttgaaaactatgatctcgaccaagcatggcctgtgattttggataattttgttgagtggatgagagaaaaacaaaagtgatctgcgctgttgagttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="71235" stop="69223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70935" g_stop="70876" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70875" i_stop="70782" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70781" g_stop="70721" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="121" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70720" i_stop="70595" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70594" g_stop="70488" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="228" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70487" i_stop="70293" i_length="195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.407" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70292" g_stop="70227" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="294" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70226" i_stop="69638" i_length="589">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69637" g_stop="69523" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="409" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E243829" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70935" e_stop="70876"/>
          <exon e_start="70781" e_stop="70721"/>
          <exon e_start="70594" e_stop="70488"/>
          <exon e_start="70292" e_stop="70227"/>
          <exon e_start="69637" e_stop="69523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAGGTATGTTGTTGTCAGCTCTTTGGTTAACTTAAGTGGGATAATTTTGCAAGATCTAATGCTCATGTAGCTGACCTTGGATCATTTACATATTCAGGTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTGGTAAGCTTCTCTTTAATAAACAAATATGTAGCCTATTAGGTTTCATATTTTTTTGGATGTTTATGTCGCATTAATCTCTATTAAGCTAGAACATTTACTAATATGTGCCTGGTTTGTCTTTCTCAGAGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAGGTAGGTACTCACTTACATGTGAATATCTTTTGGTATCACATATGCATATTTTATGATATAATTGCCCGAAGGGCGCTAGTGTTTAGGCTTATAAACAGTTAGGAAAATTAAGTTATAACAATGATGTTAGTTTTTAATTTTTCATATCTTATTTAATTTGACACCGCTGATTCTCTGTCTTTTCCTTCATACTAGAATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAGGTAAACTATTTACGTTATATAATTAATTCTACCTTAGAAGGAAATATGGTTCGTGAAGCTCATATAGCCGACACCGGCTTAAAATATGTTCCATGTCTGCCTCTCTTTTCCTATTTTCGCTTTTTTTGGATTCTCCTTGCCATTTTCTAGTTTGCATTTTTTATTTGGCTGTCAATGACCTAAGCACTATATAAACACCAATCTCAAACTATGTAATTCAGGGTGATATGATTAGACGAATGGAACCAAATTGAAACTTATGCCAAACATTGAGGACCATACAAATAATTTTATCCTATATTGCCCACTTCTCATCTACCGAGTATTATGCAAATGCTAATCTAGTAGAACAAAAGACTTCACTTTACCTTTCTGGATCCTGCTTCTTTTGTTTCTATCAACTAATTTTCGTACTATGATCAGACACATACAGGAGCACCAATAATGGTACCTTTTGGTAAAGGGGGTTCAATTGAATCCCCTTAGCCGAAAAATTGTGCTGTGGAGAAAGGGTAGAAATAATAATTTTCTTGTATCGGATCTCCTTGACATAGGTCTAATAGCTGGCCATTCTTTTGTCTTTTTGAAGGTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTT</genome_strand>
        <mrna_strand>GATCTCCATTTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAG..............................................................................................GTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTG..............................................................................................................................AGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAG...................................................................................................................................................................................................AATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCCGTTTTGTCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E241067" ref_strand="+" ref_description="SGN-E241067 [cLED-26-M13]">
      <seq>aaggtttaaaagatctccaggttgatacgattaacaaattgaaaaaagccctgccaaaattggaagcagaggttatgatgcctgaaaattttgaggatttttattcctacgccttccgttactgccttactgaggataagcagaagtgtgtggacatcgagagcatttgtctactgattgatcttgttctggggccccaatttcgtgctcaggttgactcatttagtgagtttctcaagaatcagactgattataaggtgatcaacgtggatcaatggatgaattttcttcggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="71246" stop="69935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70946" g_stop="70876" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70875" i_stop="70782" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70781" g_stop="70721" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="132" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70720" i_stop="70595" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70594" g_stop="70488" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="239" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70487" i_stop="70293" i_length="195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.407" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70292" g_stop="70235" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="297" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E241067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70946" e_stop="70876"/>
          <exon e_start="70781" e_stop="70721"/>
          <exon e_start="70594" e_stop="70488"/>
          <exon e_start="70292" e_stop="70235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAGGTATGTTGTTGTCAGCTCTTTGGTTAACTTAAGTGGGATAATTTTGCAAGATCTAATGCTCATGTAGCTGACCTTGGATCATTTACATATTCAGGTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTGGTAAGCTTCTCTTTAATAAACAAATATGTAGCCTATTAGGTTTCATATTTTTTTGGATGTTTATGTCGCATTAATCTCTATTAAGCTAGAACATTTACTAATATGTGCCTGGTTTGTCTTTCTCAGAGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAGGTAGGTACTCACTTACATGTGAATATCTTTTGGTATCACATATGCATATTTTATGATATAATTGCCCGAAGGGCGCTAGTGTTTAGGCTTATAAACAGTTAGGAAAATTAAGTTATAACAATGATGTTAGTTTTTAATTTTTCATATCTTATTTAATTTGACACCGCTGATTCTCTGTCTTTTCCTTCATACTAGAATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTT</genome_strand>
        <mrna_strand>AAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAG..............................................................................................GTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTG..............................................................................................................................AGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAG...................................................................................................................................................................................................AATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E236216" ref_strand="+" ref_description="SGN-E236216 [cLED-20-F21]">
      <seq>aaggtttaaaagatcttcaggttgatacgattaacaaattgaaaaaagccctgccaaaattggaagcagaggttatgatgcctgaaaattttgaggatttttattcctacgccttccgttactgccttactgaggataagcagaagtgtgtggacatcgagagcatttgtctactgattgatcttgttctggggccccaatttcgtgctcaggttgactcatttagtgagtttctcaagaatcagactgattataaggtgatcaacgtggatcaatggatgaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="71246" stop="69944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70946" g_stop="70876" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70875" i_stop="70782" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70781" g_stop="70721" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="132" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70720" i_stop="70595" i_length="126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70594" g_stop="70488" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="239" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70487" i_stop="70293" i_length="195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.407" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70292" g_stop="70244" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="288" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E236216" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70946" e_stop="70876"/>
          <exon e_start="70781" e_stop="70721"/>
          <exon e_start="70594" e_stop="70488"/>
          <exon e_start="70292" e_stop="70244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAGGTATGTTGTTGTCAGCTCTTTGGTTAACTTAAGTGGGATAATTTTGCAAGATCTAATGCTCATGTAGCTGACCTTGGATCATTTACATATTCAGGTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTGGTAAGCTTCTCTTTAATAAACAAATATGTAGCCTATTAGGTTTCATATTTTTTTGGATGTTTATGTCGCATTAATCTCTATTAAGCTAGAACATTTACTAATATGTGCCTGGTTTGTCTTTCTCAGAGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAGGTAGGTACTCACTTACATGTGAATATCTTTTGGTATCACATATGCATATTTTATGATATAATTGCCCGAAGGGCGCTAGTGTTTAGGCTTATAAACAGTTAGGAAAATTAAGTTATAACAATGATGTTAGTTTTTAATTTTTCATATCTTATTTAATTTGACACCGCTGATTCTCTGTCTTTTCCTTCATACTAGAATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTC</genome_strand>
        <mrna_strand>AAGGTTTAAAAGATCTTCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAG..............................................................................................GTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTG..............................................................................................................................AGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAG...................................................................................................................................................................................................AATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E248233" ref_strand="+" ref_description="SGN-E248233 [cLEF-55-G7]">
      <seq>gagctttcaaaattgcaccaaaatgcctcgagcatcaaagagaaaatctgacacccccaaatctacttctgtcaaatctgctcgctcggagtctatcacaactgcttcaagcaagactacgaagtttggattgtccgttgataatctttttcagaagtatgccaataagctgctaggcatgatcgatccagaggggattgaggcactttgctcagatcttggagtagactacacaaatgtcaaaattttgatgctcgcttggaaattgaaagctgaaaagcagggatattttactcaggatgaatggagaaaaggtttaaaagatctccaggttgatacgattaacaaattgaaaaaagccctgccaaaattggaagcagaggttatgatgcctgaaaattttgaggatttttattcctacgccttccgttactgccttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="74719" stop="70421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74419" g_stop="74316" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74315" i_stop="73070" i_length="1246">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73069" g_stop="72988" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="186" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72987" i_stop="71818" i_length="1170">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71817" g_stop="71743" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="261" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71742" i_stop="71642" i_length="101">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71641" g_stop="71605" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="298" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71604" i_stop="70960" i_length="645">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70959" g_stop="70876" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="382" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70875" i_stop="70782" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70781" g_stop="70721" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="443" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E248233" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74419" e_stop="74316"/>
          <exon e_start="73069" e_stop="72988"/>
          <exon e_start="71817" e_stop="71743"/>
          <exon e_start="71641" e_stop="71605"/>
          <exon e_start="70959" e_stop="70876"/>
          <exon e_start="70781" e_stop="70721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTTCAAAATTGCACCAAAATGCCTCGAGCATCAAAGAGAAAATCTGACACCCCCAAATCTACTTCTGTCAAATCTGCTCGCTCGGAGTCTATCACAACTGGTAAATTCTTGTTTTATTTTGGCCCTTTGTGATGTATCCTATCTATGTGATTTAGTTGTTGGTATTGTTCATTTGAACTTTTTTGATTCTTTTTTTTGGGGGGGTTTGTTTCTTAGTGATGAGGGGTATTTTAAAGTTCAAATTTTGTTTAATGAGTTGGGGCTAATCTAGATTTTGGAGCCTTGAAATGAGATTTGGGGATTTGGGTATCAAGAATAAGAAAAAAATTACTTTTTTGCACTTAAAGGGTGTGGCTTAACTGGTAATGAAGAGGGTAAGAGATGCGCGCAAGCTAGGTTCGATGCCACTTTTGTTATTAAAAAAAATAATTTAAGTGTTTTTGGGTTGTTGCATTGATATCAAGTGGCTGTTTTTCTATATTGGAAAACAAAATGAGTGGGTTGGATGTAGAGGAGGCACGCAAGGGCGTGGTCTAGTGGTCAATGAAGTGGGTGAGAACTGTGGGGTTTTGAGGTTCAAATTTCAGCAGAGACAAAAACCATTTCTTTACATCTGTCGTAGGCTTTGGTGGATAGAGTTATCTAGTATATGTATTGCATTTAAAATCAAGTGGTCTGGAATAAAATGGGCCTGAATGGATATAAAGGATTGATAGAGCTGAGTTTGGAATTTGAGTCTTAGTTGAATAATTGATCTATGTTAAGGGAGGTGTTGGATGCTTATGCCGATCTTAGATAAGTATGTGCCTCACCATGTATACTGTGATTGGAATTTCTAAAGGAAGTATAAGATTCAACCTGCATTGTTTTTCTTAATCCCTTGTTTGGATACATCTCGAAATTAGGTAAATTAAAATGTTCGAAGACACAATGCAGATAAATACTCTTTTAATCGAGTTTTTGTAGGCTTGTTTGAGATAAAATTTGTAGCTTTCTCTCTAGCTCTGCCCATGTCCTAAATCTATATTTGAATAGATATATTTATCACGCTTGAACTTCAGTAGTCCCAAATTGTTTCTGTTTTGGATGTTCCACCATATAAATGTTGTCTATCTTAATTTGCAAGTTCATCTTTTTATGAAATTTTGTTAACAATGTTGAAGACCAAGCGATGTGGTGTTTTGACTTTAAATAATGTTTCTTTTTTCATGAAATATATTTTTTCTAGCTGGATGTTTGCAATTTTCTATTTCTTTTTATTTTCTCCTCTTTATGGTCAACGTGTTTCAGTTATATTTACTTTGCCTTCACCTATAGTATCCTGAAAGATTCGTTGTTCTATTCAGCTTCAAGCAAGACTACGAAGTTTGGATTGTCCGTTGATAATCTTTTTCAGAAGTATGCCAATAAGCTGCTAGGCATGATCGAGTGAGTTCCTTTTTTCAATAGTTAATCTATTGTTCCTATGTTTCTTTTCATGAACTTTGTGATTAAATGGTATGTATAGAGCAACTCTACAAGTTATTTTTCCAAGTTTTTCCACTTTACCAAACTAAGTTGCATATATGCTGATTGTTTTGATCCATATTTACCTAGCTGAACAGTGGATATATGATCGTCTCCAGGGTCATACACATGGTTAACATAGTCTTCCTTCTGTGCATATATCTTCTGTAGCTACAGGAGTTGTTTGTTTCTGCTGCAGTTCTGCTACTGCAAAAGTTGAGTGAATGTCAATGTTCATATGTTTCATGTGAATGGGTTGTTAACTAGCATAGAATTTACTCATATAAAACAAATACTAACATTAAACTATGATGGAAGTCACTGTGTGTTTTACTATTTGTTGCTCTGATTGGATCATATCACTGAGGGAAATTCTATGAGTAGGAAACGGTTTGGTGGTTTTAATTCCTTAATACTTTGAATTTTTCAACGGTTTCTACCAAGTTGCTATACCATTTATTTCCATGCTAAAGGTCATTGCTATCAATACAAATGCCTAAAAGAACTGATTTGATGGAAGTGATAGCTGAAAATTATGTCATTCTGAGGATTTTATCTGGCAGTATCTTGTTTTGATTCGTAATTTTGTGAAACCAAGCTTGCTTAAAATAGATGTGCTTGATTAGCAATATTAATATGGTCTACTCGCATCAAGTAGTTGTTGGTCCTGTCAACTAGGCATATTAGCTTACTGTAAAACTTTATAGTTCCTTTGAATATCAGACTTACCTCTTATTATTTTCTTCTTTTAGCACAAGTACATTCTGATAAATATCTAGTTTTAGAATATCTCAAAGTTTAATAACACGCTGTAAACAATGCCGACCTAAAGAGAAAAGGTTTCAATAAAACTACAGTTATCCATCAAGTAAGTCTTTCCTTCTATTGAAATGTCAGTATAATTTTTTAGAGTTCTAATTCATTTATCCTAACATTGAACTGAAATGTGATAACTTTATGAACGAAGCTTTTAACGATTGATGGAGTTAAGGTATCAGAGGGAGATTTTGTCATTACTATCATTCTATTAGTGTTTGAAAGTAAAGGATTTTGGAATCTTTGTTAATCTTCTGTTTGTTTTTGTGTGCACAGTCCAGAGGGGATTGAGGCACTTTGCTCAGATCTTGGAGTAGACTACACAAATGTCAAAATTTTGATGCTCGCTTGGTAAGCCATTTGCTGTCAATATGTGTCTATGTGATCAATAATTTATTTTAAGGAAATGTTGTGTCTCTTAATCTATATAACTCACTATTCACATGGATCAGGAAATTGAAAGCTGAAAAGCAGGGATATTTTACTCAGGTAAGATACTGCTATTTATTTGTTCAGCTTCCTCTTGAGTATAAACTAGGGGTTGCCAAATTAACCCATAAGAACATGATCTGCACAACCTGTTCAAGTTTGGTCTGATCATTGACACCGTCATTTATTAGCTCAACCTATTTCAAGCCATCTGAAAAATGAGCTTGATATGTACTCCAAATTGACATAAAAATCTCGCTAAAATATTTTCAAAAAGATAATTCTTTATTTGATATGTTATATATAGTCATAATAAAGGAGAAAATAGTGTTATTAGGCACTTAAAAAGTTATAAAAGAACAAAAATGAAACTAGAACATACTAAGAGTTGGGCAGCTTGGGATATGACCCGGGTTTTAGCCCATTTTTAGCACAAGTAACTTGTGGGCGGGTAATCCAGCCCAATCCACCCATTTTGACACCCCTAGTATAAGACATTTCAATGTGTTCTCTTTTGTGATGTATTCATTAGGATGATGTACTGTTATAATTGTCTGGTGGTTGATCCTTTTCTGTTTGTCAGTGTTTTGCTTTGTTCTTTTTGTTGATACAACTACATTCTCATTCGAGTTGACTTTAGCATTTGCTCTTGGATCAATATAGTGCATTTTTCCTCTGTGACGGAAAATCTTTTCTAATTGTCAGGATGAATGGAGAAAAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAGGTATGTTGTTGTCAGCTCTTTGGTTAACTTAAGTGGGATAATTTTGCAAGATCTAATGCTCATGTAGCTGACCTTGGATCATTTACATATTCAGGTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTG</genome_strand>
        <mrna_strand>GAGCTTTCAAAATTGCACCAAAATGCCTCGAGCATCAAAGAGAAAATCTGACACCCCCAAATCTACTTCTGTCAAATCTGCTCGCTCGGAGTCTATCACAACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAGCAAGACTACGAAGTTTGGATTGTCCGTTGATAATCTTTTTCAGAAGTATGCCAATAAGCTGCTAGGCATGATCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAGGGGATTGAGGCACTTTGCTCAGATCTTGGAGTAGACTACACAAATGTCAAAATTTTGATGCTCGCTTG.....................................................................................................GAAATTGAAAGCTGAAAAGCAGGGATATTTTACTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATGGAGAAAAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAG..............................................................................................GTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E245308" ref_strand="+" ref_description="SGN-E245308 [cLEF-44-D19]">
      <seq>gagctttcaaaattgcaccaaaatgcctcgagcatcaaagagaaaatctgacacccccaaatctacttctgtcaaatctgctcgctcggagtctatcacaactgcttcaagcaagactacgaagtttggattgtccgttgataatctttttcagaagtatgccaataagctgctaggcatgatcgatccagaggggattgaggcactttgctcagatcttggagtagactacacaaatgtcaaaattttgatgctcgcttggaaattgaaagctgaaaagcagggatattttactcaggtaagatactgctatttatttgttcagcttcctcttgagtataaactaggggttgccaaattaacccataagaacatgatctgcacaacctgttcaagtttggtctgatcattgacaccgtcatttattagctcaacctatttcaagccatctgaaaaatgagcttgatatgtactccaaattgacataaaaatctcgctaaaatattttcaaaaagataattctttatttgatatgttatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="74719" stop="71059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74419" g_stop="74316" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74315" i_stop="73070" i_length="1246">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73069" g_stop="72988" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="186" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72987" i_stop="71818" i_length="1170">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71817" g_stop="71743" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="261" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71742" i_stop="71642" i_length="101">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71641" g_stop="71359" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="544" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E245308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74419" e_stop="74316"/>
          <exon e_start="73069" e_stop="72988"/>
          <exon e_start="71817" e_stop="71743"/>
          <exon e_start="71641" e_stop="71359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTTCAAAATTGCACCAAAATGCCTCGAGCATCAAAGAGAAAATCTGACACCCCCAAATCTACTTCTGTCAAATCTGCTCGCTCGGAGTCTATCACAACTGGTAAATTCTTGTTTTATTTTGGCCCTTTGTGATGTATCCTATCTATGTGATTTAGTTGTTGGTATTGTTCATTTGAACTTTTTTGATTCTTTTTTTTGGGGGGGTTTGTTTCTTAGTGATGAGGGGTATTTTAAAGTTCAAATTTTGTTTAATGAGTTGGGGCTAATCTAGATTTTGGAGCCTTGAAATGAGATTTGGGGATTTGGGTATCAAGAATAAGAAAAAAATTACTTTTTTGCACTTAAAGGGTGTGGCTTAACTGGTAATGAAGAGGGTAAGAGATGCGCGCAAGCTAGGTTCGATGCCACTTTTGTTATTAAAAAAAATAATTTAAGTGTTTTTGGGTTGTTGCATTGATATCAAGTGGCTGTTTTTCTATATTGGAAAACAAAATGAGTGGGTTGGATGTAGAGGAGGCACGCAAGGGCGTGGTCTAGTGGTCAATGAAGTGGGTGAGAACTGTGGGGTTTTGAGGTTCAAATTTCAGCAGAGACAAAAACCATTTCTTTACATCTGTCGTAGGCTTTGGTGGATAGAGTTATCTAGTATATGTATTGCATTTAAAATCAAGTGGTCTGGAATAAAATGGGCCTGAATGGATATAAAGGATTGATAGAGCTGAGTTTGGAATTTGAGTCTTAGTTGAATAATTGATCTATGTTAAGGGAGGTGTTGGATGCTTATGCCGATCTTAGATAAGTATGTGCCTCACCATGTATACTGTGATTGGAATTTCTAAAGGAAGTATAAGATTCAACCTGCATTGTTTTTCTTAATCCCTTGTTTGGATACATCTCGAAATTAGGTAAATTAAAATGTTCGAAGACACAATGCAGATAAATACTCTTTTAATCGAGTTTTTGTAGGCTTGTTTGAGATAAAATTTGTAGCTTTCTCTCTAGCTCTGCCCATGTCCTAAATCTATATTTGAATAGATATATTTATCACGCTTGAACTTCAGTAGTCCCAAATTGTTTCTGTTTTGGATGTTCCACCATATAAATGTTGTCTATCTTAATTTGCAAGTTCATCTTTTTATGAAATTTTGTTAACAATGTTGAAGACCAAGCGATGTGGTGTTTTGACTTTAAATAATGTTTCTTTTTTCATGAAATATATTTTTTCTAGCTGGATGTTTGCAATTTTCTATTTCTTTTTATTTTCTCCTCTTTATGGTCAACGTGTTTCAGTTATATTTACTTTGCCTTCACCTATAGTATCCTGAAAGATTCGTTGTTCTATTCAGCTTCAAGCAAGACTACGAAGTTTGGATTGTCCGTTGATAATCTTTTTCAGAAGTATGCCAATAAGCTGCTAGGCATGATCGAGTGAGTTCCTTTTTTCAATAGTTAATCTATTGTTCCTATGTTTCTTTTCATGAACTTTGTGATTAAATGGTATGTATAGAGCAACTCTACAAGTTATTTTTCCAAGTTTTTCCACTTTACCAAACTAAGTTGCATATATGCTGATTGTTTTGATCCATATTTACCTAGCTGAACAGTGGATATATGATCGTCTCCAGGGTCATACACATGGTTAACATAGTCTTCCTTCTGTGCATATATCTTCTGTAGCTACAGGAGTTGTTTGTTTCTGCTGCAGTTCTGCTACTGCAAAAGTTGAGTGAATGTCAATGTTCATATGTTTCATGTGAATGGGTTGTTAACTAGCATAGAATTTACTCATATAAAACAAATACTAACATTAAACTATGATGGAAGTCACTGTGTGTTTTACTATTTGTTGCTCTGATTGGATCATATCACTGAGGGAAATTCTATGAGTAGGAAACGGTTTGGTGGTTTTAATTCCTTAATACTTTGAATTTTTCAACGGTTTCTACCAAGTTGCTATACCATTTATTTCCATGCTAAAGGTCATTGCTATCAATACAAATGCCTAAAAGAACTGATTTGATGGAAGTGATAGCTGAAAATTATGTCATTCTGAGGATTTTATCTGGCAGTATCTTGTTTTGATTCGTAATTTTGTGAAACCAAGCTTGCTTAAAATAGATGTGCTTGATTAGCAATATTAATATGGTCTACTCGCATCAAGTAGTTGTTGGTCCTGTCAACTAGGCATATTAGCTTACTGTAAAACTTTATAGTTCCTTTGAATATCAGACTTACCTCTTATTATTTTCTTCTTTTAGCACAAGTACATTCTGATAAATATCTAGTTTTAGAATATCTCAAAGTTTAATAACACGCTGTAAACAATGCCGACCTAAAGAGAAAAGGTTTCAATAAAACTACAGTTATCCATCAAGTAAGTCTTTCCTTCTATTGAAATGTCAGTATAATTTTTTAGAGTTCTAATTCATTTATCCTAACATTGAACTGAAATGTGATAACTTTATGAACGAAGCTTTTAACGATTGATGGAGTTAAGGTATCAGAGGGAGATTTTGTCATTACTATCATTCTATTAGTGTTTGAAAGTAAAGGATTTTGGAATCTTTGTTAATCTTCTGTTTGTTTTTGTGTGCACAGTCCAGAGGGGATTGAGGCACTTTGCTCAGATCTTGGAGTAGACTACACAAATGTCAAAATTTTGATGCTCGCTTGGTAAGCCATTTGCTGTCAATATGTGTCTATGTGATCAATAATTTATTTTAAGGAAATGTTGTGTCTCTTAATCTATATAACTCACTATTCACATGGATCAGGAAATTGAAAGCTGAAAAGCAGGGATATTTTACTCAGGTAAGATACTGCTATTTATTTGTTCAGCTTCCTCTTGAGTATAAACTAGGGGTTGCCAAATTAACCCATAAGAACATGATCTGCACAACCTGTTCAAGTTTGGTCTGATCATTGACACCGTCATTTATTAGCTCAACCTATTTCAAGCCATCTGAAAAATGAGCTTGATATGTACTCCAAATTGACATAAAAATCTCGCTAAAATATTTTCAAAAAGATAATTCTTTATTTGATATGTTATATATA</genome_strand>
        <mrna_strand>GAGCTTTCAAAATTGCACCAAAATGCCTCGAGCATCAAAGAGAAAATCTGACACCCCCAAATCTACTTCTGTCAAATCTGCTCGCTCGGAGTCTATCACAACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAAGCAAGACTACGAAGTTTGGATTGTCCGTTGATAATCTTTTTCAGAAGTATGCCAATAAGCTGCTAGGCATGATCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAGGGGATTGAGGCACTTTGCTCAGATCTTGGAGTAGACTACACAAATGTCAAAATTTTGATGCTCGCTTG.....................................................................................................GAAATTGAAAGCTGAAAAGCAGGGATATTTTACTCAGGTAAGATACTGCTATTTATTTGTTCAGCTTCCTCTTGAGTATAAACTAGGGGTTGCCAAATTAACCCATAAGAACATGATCTGCACAACCTGTTCAAGTTTGGTCTGATCATTGACACCGTCATTTATTAGCTCAACCTATTTCAAGCCATCTGAAAAATGAGCTTGATATGTACTCCAAATTGACATAAAAATCTCGCTAAAATATTTTCAAAAAGATAATTCTTTATTTGATATGTTATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2Ao9jN/sgn_ests_tomato" ref_id="SGN-E245307" ref_strand="+" ref_description="SGN-E245307 [cLEF-44-D17]">
      <seq>gagctttcaacattgcacctaaatgcctcgagcatggaagagaaaatctgacacccccaaatctacttctgccaaatctgctcgctcggagtctatcacaactgcttcaaccaagactactacgtttggattggccgatgataatctttttcagaagtatgccaatgagctggtacgcatgatcgatccagaggggattgatgcactttgctcagatcttggagtagactacacagatgttaaaattgtgatgctcgcttggaaattgaaagctgaaacgcagggatattttactcaggtcagatactgctatatatttgttcagcttcctcttgagtcttaactaggggatgccaaaataacccatatgaacatgaactgcacaacctgttcaagttaggtctgatcattgacaccgtcattgattatctcaacctatttcaagccatctgaaaaatgagcttgatatgtactccaaattgacataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0111B06-qLe6r/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0111B06.2" temp_strand="-" temp_description="C07SLe0111B06.2  AC212646.2 htgs_phase:2 submitted_to_sgn_as:gi|167832403|gb|AC212646.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0111B06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="74719" stop="71112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74419" g_stop="74316" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74315" i_stop="73070" i_length="1246">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73069" g_stop="72988" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="186" r_length="82" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72987" i_stop="71818" i_length="1170">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71817" g_stop="71743" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="261" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71742" i_stop="71642" i_length="101">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71641" g_stop="71412" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="491" r_length="230" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0111B06.2" gen_strand="-" ref_id="SGN-E245307" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0111B06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74419" e_stop="74316"/>
          <exon e_start="73069" e_stop="72988"/>
          <exon e_start="71817" e_stop="71743"/>
          <exon e_start="71641" e_stop="71412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTTCAAAATTGCACCAAAATGCCTCGAGCATCAAAGAGAAAATCTGACACCCCCAAATCTACTTCTGTCAAATCTGCTCGCTCGGAGTCTATCACAACTGGTAAATTCTTGTTTTATTTTGGCCCTTTGTGATGTATCCTATCTATGTGATTTAGTTGTTGGTATTGTTCATTTGAACTTTTTTGATTCTTTTTTTTGGGGGGGTTTGTTTCTTAGTGATGAGGGGTATTTTAAAGTTCAAATTTTGTTTAATGAGTTGGGGCTAATCTAGATTTTGGAGCCTTGAAATGAGATTTGGGGATTTGGGTATCAAGAATAAGAAAAAAATTACTTTTTTGCACTTAAAGGGTGTGGCTTAACTGGTAATGAAGAGGGTAAGAGATGCGCGCAAGCTAGGTTCGATGCCACTTTTGTTATTAAAAAAAATAATTTAAGTGTTTTTGGGTTGTTGCATTGATATCAAGTGGCTGTTTTTCTATATTGGAAAACAAAATGAGTGGGTTGGATGTAGAGGAGGCACGCAAGGGCGTGGTCTAGTGGTCAATGAAGTGGGTGAGAACTGTGGGGTTTTGAGGTTCAAATTTCAGCAGAGACAAAAACCATTTCTTTACATCTGTCGTAGGCTTTGGTGGATAGAGTTATCTAGTATATGTATTGCATTTAAAATCAAGTGGTCTGGAATAAAATGGGCCTGAATGGATATAAAGGATTGATAGAGCTGAGTTTGGAATTTGAGTCTTAGTTGAATAATTGATCTATGTTAAGGGAGGTGTTGGATGCTTATGCCGATCTTAGATAAGTATGTGCCTCACCATGTATACTGTGATTGGAATTTCTAAAGGAAGTATAAGATTCAACCTGCATTGTTTTTCTTAATCCCTTGTTTGGATACATCTCGAAATTAGGTAAATTAAAATGTTCGAAGACACAATGCAGATAAATACTCTTTTAATCGAGTTTTTGTAGGCTTGTTTGAGATAAAATTTGTAGCTTTCTCTCTAGCTCTGCCCATGTCCTAAATCTATATTTGAATAGATATATTTATCACGCTTGAACTTCAGTAGTCCCAAATTGTTTCTGTTTTGGATGTTCCACCATATAAATGTTGTCTATCTTAATTTGCAAGTTCATCTTTTTATGAAATTTTGTTAACAATGTTGAAGACCAAGCGATGTGGTGTTTTGACTTTAAATAATGTTTCTTTTTTCATGAAATATATTTTTTCTAGCTGGATGTTTGCAATTTTCTATTTCTTTTTATTTTCTCCTCTTTATGGTCAACGTGTTTCAGTTATATTTACTTTGCCTTCACCTATAGTATCCTGAAAGATTCGTTGTTCTATTCAGCTTCAAGCAAGACTACGAAGTTTGGATTGTCCGTTGATAATCTTTTTCAGAAGTATGCCAATAAGCTGCTAGGCATGATCGAGTGAGTTCCTTTTTTCAATAGTTAATCTATTGTTCCTATGTTTCTTTTCATGAACTTTGTGATTAAATGGTATGTATAGAGCAACTCTACAAGTTATTTTTCCAAGTTTTTCCACTTTACCAAACTAAGTTGCATATATGCTGATTGTTTTGATCCATATTTACCTAGCTGAACAGTGGATATATGATCGTCTCCAGGGTCATACACATGGTTAACATAGTCTTCCTTCTGTGCATATATCTTCTGTAGCTACAGGAGTTGTTTGTTTCTGCTGCAGTTCTGCTACTGCAAAAGTTGAGTGAATGTCAATGTTCATATGTTTCATGTGAATGGGTTGTTAACTAGCATAGAATTTACTCATATAAAACAAATACTAACATTAAACTATGATGGAAGTCACTGTGTGTTTTACTATTTGTTGCTCTGATTGGATCATATCACTGAGGGAAATTCTATGAGTAGGAAACGGTTTGGTGGTTTTAATTCCTTAATACTTTGAATTTTTCAACGGTTTCTACCAAGTTGCTATACCATTTATTTCCATGCTAAAGGTCATTGCTATCAATACAAATGCCTAAAAGAACTGATTTGATGGAAGTGATAGCTGAAAATTATGTCATTCTGAGGATTTTATCTGGCAGTATCTTGTTTTGATTCGTAATTTTGTGAAACCAAGCTTGCTTAAAATAGATGTGCTTGATTAGCAATATTAATATGGTCTACTCGCATCAAGTAGTTGTTGGTCCTGTCAACTAGGCATATTAGCTTACTGTAAAACTTTATAGTTCCTTTGAATATCAGACTTACCTCTTATTATTTTCTTCTTTTAGCACAAGTACATTCTGATAAATATCTAGTTTTAGAATATCTCAAAGTTTAATAACACGCTGTAAACAATGCCGACCTAAAGAGAAAAGGTTTCAATAAAACTACAGTTATCCATCAAGTAAGTCTTTCCTTCTATTGAAATGTCAGTATAATTTTTTAGAGTTCTAATTCATTTATCCTAACATTGAACTGAAATGTGATAACTTTATGAACGAAGCTTTTAACGATTGATGGAGTTAAGGTATCAGAGGGAGATTTTGTCATTACTATCATTCTATTAGTGTTTGAAAGTAAAGGATTTTGGAATCTTTGTTAATCTTCTGTTTGTTTTTGTGTGCACAGTCCAGAGGGGATTGAGGCACTTTGCTCAGATCTTGGAGTAGACTACACAAATGTCAAAATTTTGATGCTCGCTTGGTAAGCCATTTGCTGTCAATATGTGTCTATGTGATCAATAATTTATTTTAAGGAAATGTTGTGTCTCTTAATCTATATAACTCACTATTCACATGGATCAGGAAATTGAAAGCTGAAAAGCAGGGATATTTTACTCAGGTAAGATACTGCTATTTATTTGTTCAGCTTCCTCTTGAGTATAAACTAGGGGTTGCCAAATTAACCCATAAGAACATGATCTGCACAACCTGTTCAAGTTTGGTCTGATCATTGACACCGTCATTTATTAGCTCAACCTATTTCAAGCCATCTGAAAAATGAGCTTGATATGTACTCCAAATTGACATAAAAA</genome_strand>
        <mrna_strand>GAGCTTTCAACATTGCACCTAAATGCCTCGAGCATGGAAGAGAAAATCTGACACCCCCAAATCTACTTCTGCCAAATCTGCTCGCTCGGAGTCTATCACAACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAACCAAGACTACTACGTTTGGATTGGCCGATGATAATCTTTTTCAGAAGTATGCCAATGAGCTGGTACGCATGATCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAGGGGATTGATGCACTTTGCTCAGATCTTGGAGTAGACTACACAGATGTTAAAATTGTGATGCTCGCTTG.....................................................................................................GAAATTGAAAGCTGAAACGCAGGGATATTTTACTCAGGTCAGATACTGCTATATATTTGTTCAGCTTCCTCTTGAGTCTTAACTAGGGGATGCCAAAATAACCCATATGAACATGAACTGCACAACCTGTTCAAGTTAGGTCTGATCATTGACACCGTCATTGATTATCTCAACCTATTTCAAGCCATCTGAAAAATGAGCTTGATATGTACTCCAAATTGACATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>33</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2442" PGL_stop="2024"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2442" e_stop="2024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2442" e_stop="2024" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2442" stop="2024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303596" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAAATACATATATTAGATGAAGAAATATGAGCAATTTTGTGCTCATACAGAGAAATATAACTAGCATAAAGCTACATAGCGGACAACAAAATTTGAGCTAGTGTGATGAAAACTTCATTTTTGCATTCAGTCTTTCCAACCAGCTTGGCGCGCTCTGCGTTCCCAAAGGTTAGTCAACTTCATTTCCTTGGCATACAACACAACAGCTCTTTCTCTCCCGACTTCACAAGTTTCCGTTGTAGCAATGCATTTCTCAGCCTCCTTTTGGTACTCGGTAGCTAACCTCCTCGCCTCCACAAAGGTGATGTTCATATGATGGGCGTGCTCCTTGTCAACAGCCTCCTGCAGTTTCAGCTCTTCCGATAATAAATCAACGAACTGTTTCTCCATCTCCTCCTTAAGGTCCGGATCATCTTT</gDNA_template>
            <first_frame> V  K  Y  I  Y  *  M  K  K  Y  E  Q  F  C  A  H  T  E  K  Y  N  *  H  K  A  T  *  R  T  T  K  F  E  L  V  *  *  K  L  H  F  C  I  Q  S  F  Q  P  A  W  R  A  L  R  S  Q  R  L  V  N  F  I  S  L  A  Y  N  T  T  A  L  S  L  P  T  S  Q  V  S  V  V  A  M  H  F  S  A  S  F  W  Y  S  V  A  N  L  L  A  S  T  K  V  M  F  I  *  W  A  C  S  L  S  T  A  S  C  S  F  S  S  S  D  N  K  S  T  N  C  F  S  I  S  S  L  R  S  G  S  S   </first_frame>
            <second_frame>  *  N  T  Y  I  R  *  R  N  M  S  N  F  V  L  I  Q  R  N  I  T  S  I  K  L  H  S  G  Q  Q  N  L  S  *  C  D  E  N  F  I  F  A  F  S  L  S  N  Q  L  G  A  L  C  V  P  K  G  *  S  T  S  F  P  W  H  T  T  Q  Q  L  F  L  S  R  L  H  K  F  P  L  *  Q  C  I  S  Q  P  P  F  G  T  R  *  L  T  S  S  P  P  Q  R  *  C  S  Y  D  G  R  A  P  C  Q  Q  P  P  A  V  S  A  L  P  I  I  N  Q  R  T  V  S  P  S  P  P  *  G  P  D  H  L  </second_frame>
            <third_frame>   K  I  H  I  L  D  E  E  I  *  A  I  L  C  S  Y  R  E  I  *  L  A  *  S  Y  I  A  D  N  K  I  *  A  S  V  M  K  T  S  F  L  H  S  V  F  P  T  S  L  A  R  S  A  F  P  K  V  S  Q  L  H  F  L  G  I  Q  H  N  S  S  F  S  P  D  F  T  S  F  R  C  S  N  A  F  L  S  L  L  L  V  L  G  S  *  P  P  R  L  H  K  G  D  V  H  M  M  G  V  L  L  V  N  S  L  L  Q  F  Q  L  F  R  *  *  I  N  E  L  F  L  H  L  L  L  K  V  R  I  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0111B06.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2331" stop="2125"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLHFCIQSFQPAWRALRSQRLVNFISLAYNTTALSLPTSQVSVVAMHFSASFWYSVANLLASTKVMFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="2122" PGL_stop="2506"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2122" e_stop="2506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="2122" e_stop="2506" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2122" stop="2506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299660" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATCATATGAACATCACCTTTGTGGAGGCGAGGAGGTTAGCTACCGAGTACCAAAAGGAGGCTGAGAAATGCATTGCTACAACGGAAACTTGTGAAGTCGGGAGAGAAAGAGCTGTTGTGTTGTATGCCAAGGAAATGAAGTTGACTAACCTTTGGGAACGCAGAGCGCGCCAAGCTGGTTGGAAAGACTGAATGCAAAAATGAAGTTTTCATCACACTAGCTCAAATTTTGTTGTCCGCTATGTAGCTTTATGCTAGTTATATTTCTCTGTATGAGCACAAAATTGCTCATATTTCTTCATCTAATATATGTATTTTACCTGCTCTCCTGTGTACCTTGCCATTATCATATGAAATATAAACTTCCCCACTATAGTTTCTATG</gDNA_template>
            <first_frame> P  S  Y  E  H  H  L  C  G  G  E  E  V  S  Y  R  V  P  K  G  G  *  E  M  H  C  Y  N  G  N  L  *  S  R  E  R  K  S  C  C  V  V  C  Q  G  N  E  V  D  *  P  L  G  T  Q  S  A  P  S  W  L  E  R  L  N  A  K  M  K  F  S  S  H  *  L  K  F  C  C  P  L  C  S  F  M  L  V  I  F  L  C  M  S  T  K  L  L  I  F  L  H  L  I  Y  V  F  Y  L  L  S  C  V  P  C  H  Y  H  M  K  Y  K  L  P  H  Y  S  F  Y  </first_frame>
            <second_frame>  H  H  M  N  I  T  F  V  E  A  R  R  L  A  T  E  Y  Q  K  E  A  E  K  C  I  A  T  T  E  T  C  E  V  G  R  E  R  A  V  V  L  Y  A  K  E  M  K  L  T  N  L  W  E  R  R  A  R  Q  A  G  W  K  D  *  M  Q  K  *  S  F  H  H  T  S  S  N  F  V  V  R  Y  V  A  L  C  *  L  Y  F  S  V  *  A  Q  N  C  S  Y  F  F  I  *  Y  M  Y  F  T  C  S  P  V  Y  L  A  I  I  I  *  N  I  N  F  P  T  I  V  S  M </second_frame>
            <third_frame>   I  I  *  T  S  P  L  W  R  R  G  G  *  L  P  S  T  K  R  R  L  R  N  A  L  L  Q  R  K  L  V  K  S  G  E  K  E  L  L  C  C  M  P  R  K  *  S  *  L  T  F  G  N  A  E  R  A  K  L  V  G  K  T  E  C  K  N  E  V  F  I  T  L  A  Q  I  L  L  S  A  M  *  L  Y  A  S  Y  I  S  L  Y  E  H  K  I  A  H  I  S  S  S  N  I  C  I  L  P  A  L  L  C  T  L  P  L  S  Y  E  I  *  T  S  P  L  *  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0111B06.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="13988" PGL_stop="13596"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13988" e_stop="13596"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="13988" e_stop="13596" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13988" stop="13596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTTGCTTCCAGGGAATCCCCAGCAACCACTGACTGGGGGAGGATTTGGAAATCAGCACTCTCAAAACATAACTCCCTTTAGCTCAGACTCGTTCAATACTGGTGTTAATGGATCTTCCAACTTTCTGGAACATGGTAGATGTAATGACTGGCAAAATTCCGTTCAGCTATCGAAGTTCCAGTCTAATTCTTTCCCATTGACTGAATCGTTCATTAACAGCCATTTGCCACAAATTAGTGCAAGGGAAGCGGCGGCTCATTTACAGAATAGCCCTCTTGATTTTACTTCCACCACCTCAGTTTCTCCTCCTTTTGAAGATTCAAGGGGAGAAATCCAATTCCGGCAAAGTATGGCTAGTGCTGTTCAGAGTATGAATCAAACACCATCTCAA</gDNA_template>
            <first_frame> M  L  L  P  G  N  P  Q  Q  P  L  T  G  G  G  F  G  N  Q  H  S  Q  N  I  T  P  F  S  S  D  S  F  N  T  G  V  N  G  S  S  N  F  L  E  H  G  R  C  N  D  W  Q  N  S  V  Q  L  S  K  F  Q  S  N  S  F  P  L  T  E  S  F  I  N  S  H  L  P  Q  I  S  A  R  E  A  A  A  H  L  Q  N  S  P  L  D  F  T  S  T  T  S  V  S  P  P  F  E  D  S  R  G  E  I  Q  F  R  Q  S  M  A  S  A  V  Q  S  M  N  Q  T  P  S  Q </first_frame>
            <second_frame>  C  C  F  Q  G  I  P  S  N  H  *  L  G  E  D  L  E  I  S  T  L  K  T  *  L  P  L  A  Q  T  R  S  I  L  V  L  M  D  L  P  T  F  W  N  M  V  D  V  M  T  G  K  I  P  F  S  Y  R  S  S  S  L  I  L  S  H  *  L  N  R  S  L  T  A  I  C  H  K  L  V  Q  G  K  R  R  L  I  Y  R  I  A  L  L  I  L  L  P  P  P  Q  F  L  L  L  L  K  I  Q  G  E  K  S  N  S  G  K  V  W  L  V  L  F  R  V  *  I  K  H  H  L   </second_frame>
            <third_frame>   V  A  S  R  E  S  P  A  T  T  D  W  G  R  I  W  K  S  A  L  S  K  H  N  S  L  *  L  R  L  V  Q  Y  W  C  *  W  I  F  Q  L  S  G  T  W  *  M  *  *  L  A  K  F  R  S  A  I  E  V  P  V  *  F  F  P  I  D  *  I  V  H  *  Q  P  F  A  T  N  *  C  K  G  S  G  G  S  F  T  E  *  P  S  *  F  Y  F  H  H  L  S  F  S  S  F  *  R  F  K  G  R  N  P  I  P  A  K  Y  G  *  C  C  S  E  Y  E  S  N  T  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0111B06.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13988" stop="13596"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLLPGNPQQPLTGGGFGNQHSQNITPFSSDSFNTGVNGSSNFLEHGRCNDWQNSVQLSKFQSNSFPLTESFINSHLPQISAREAAAHLQNSPLDFTSTTSVSPPFEDSRGEIQFRQSMASAVQSMNQTPSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="15450" PGL_stop="14270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15450" e_stop="15403"/>
            <exon e_start="15308" e_stop="15232"/>
            <exon e_start="14468" e_stop="14270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.790" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15450" e_stop="15403" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.790" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15402" i_stop="15309" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15308" e_stop="15232" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15231" i_stop="14469" i_length="763"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14468" e_stop="14270" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15450" stop="15403"/>
              <exon start="15308" stop="15232"/>
              <exon start="14468" stop="14270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTCACAGGAAGTTTGTTGCAGCTGTTGGTCAGTTGGGCATCGAAA : AAGCTGTGCCAAAGAGGATTCTTGACTTGATGAATGTTGACGGGCTTACAAGGGAAAATGTGGCAAGCCATCTGCAG : AAGTATAGGCTTTACTTGAAAAGGATCAATTCAGTTCAAACCCAACAAGCAAACATGGTTGCCGCATTAGGGGGAAGGGACTATGTGCGAATGGGCTCACTGGATGGGCTTGGAGATTTTCGAACATTGGGTGGATCAGGACGGTATACTCATGCTGCCTTGTCATCGTACAGTTCAGGGGGCATGCTTGGCAGACTAA</gDNA_template>
            <first_frame> N  F  T  G  S  L  L  Q  L  L  V  S  W  A  S  K  :  K  L  C  Q  R  G  F  L  T  *  *  M  L  T  G  L  Q  G  K  M  W  Q  A  I  C  R :   S  I  G  F  T  *  K  G  S  I  Q  F  K  P  N  K  Q  T  W  L  P  H  *  G  E  G  T  M  C  E  W  A  H  W  M  G  L  E  I  F  E  H  W  V  D  Q  D  G  I  L  M  L  P  C  H  R  T  V  Q  G  A  C  L  A  D  * </first_frame>
            <second_frame>  T  S  Q  E  V  C  C  S  C  W  S  V  G  H  R  K :   S  C  A  K  E  D  S  *  L  D  E  C  *  R  A  Y  K  G  K  C  G  K  P  S  A   : E  V  *  A  L  L  E  K  D  Q  F  S  S  N  P  T  S  K  H  G  C  R  I  R  G  K  G  L  C  A  N  G  L  T  G  W  A  W  R  F  S  N  I  G  W  I  R  T  V  Y  S  C  C  L  V  I  V  Q  F  R  G  H  A  W  Q  T   </second_frame>
            <third_frame>   L  H  R  K  F  V  A  A  V  G  Q  L  G  I  E   : K  A  V  P  K  R  I  L  D  L  M  N  V  D  G  L  T  R  E  N  V  A  S  H  L  Q  :  K  Y  R  L  Y  L  K  R  I  N  S  V  Q  T  Q  Q  A  N  M  V  A  A  L  G  G  R  D  Y  V  R  M  G  S  L  D  G  L  G  D  F  R  T  L  G  G  S  G  R  Y  T  H  A  A  L  S  S  Y  S  S  G  G  M  L  G  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0111B06.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15448" stop="15403"/>
                    <exon start="15308" stop="15232"/>
                    <exon start="14468" stop="14271"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHRKFVAAVGQLGIEKAVPKRILDLMNVDGLTRENVASHLQKYRLYLKRINSVQTQQANMVAALGGRDYVRMGSLDGLGDFRTLGGSGRYTHAALSSYSSGGMLGRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="33084" PGL_stop="31187"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33084" e_stop="32650"/>
            <exon e_start="31551" e_stop="31515"/>
            <exon e_start="31327" e_stop="31187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="33084" e_stop="32650" e_length="435"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="32649" i_stop="31552" i_length="1098"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31551" e_stop="31515" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="31514" i_stop="31328" i_length="187"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31327" e_stop="31187" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33084" stop="32650"/>
              <exon start="31551" stop="31515"/>
              <exon start="31327" stop="31187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAACCCAAAAAACAGAGAACAAAAAAAAAATCATATCCAAAAAAAAAAAAGCTTTTTTCTCTGATTTTTTCAACAGAAATTCTTGAACTTTTATTTTTTTGGTCAATTTGATGGCCTAAATCTTAATTAGGAAAATGGGGAATGTAACAGCAGGTGTAGCTGCAAAATTTGCATTTTTTCCACCAGAGCCACCAACATATGAAGTATTTAAAGATGAAGATGGAAGGGTTTGTTTTAGTGGAATAACAGCTGATAAGAATGTAAATGTTCATTTGTTAGATACAAAAGGTGGTAATAAAATTGTAGCTACTTTTTGGAAACATCCATCTGGCAGATTTACACTTCTTTATTCACATGGAAATGCTGCTGATTTGGGACAAATGATTGATCTTTTTGTTGAGCTTAGAGCTCATCTTCGTGTTAATATTATGTG : CTATGATTACACGGGATATGGTGGATCTTCAGGTAAG : CCATCTGAGTTCAACACGTACCACGACATAGAAGCTGTCTATAATTGTTTGAAGAGTGAATACAGCATTAAGCAAGAGGATATCATCCTATATGGACAATCTGTTGGCAGTGGACCGACACTACACTTGGCATCTCGCCTA</gDNA_template>
            <first_frame> T  N  P  K  N  R  E  Q  K  K  N  H  I  Q  K  K  K  S  F  F  L  *  F  F  Q  Q  K  F  L  N  F  Y  F  F  G  Q  F  D  G  L  N  L  N  *  E  N  G  E  C  N  S  R  C  S  C  K  I  C  I  F  S  T  R  A  T  N  I  *  S  I  *  R  *  R  W  K  G  L  F  *  W  N  N  S  *  *  E  C  K  C  S  F  V  R  Y  K  R  W  *  *  N  C  S  Y  F  L  E  T  S  I  W  Q  I  Y  T  S  L  F  T  W  K  C  C  *  F  G  T  N  D  *  S  F  C  *  A  *  S  S  S  S  C  *  Y  Y  V  :  L  *  L  H  G  I  W  W  I  F  R  *   : A  I  *  V  Q  H  V  P  R  H  R  S  C  L  *  L  F  E  E  *  I  Q  H  *  A  R  G  Y  H  P  I  W  T  I  C  W  Q  W  T  D  T  T  L  G  I  S  P  </first_frame>
            <second_frame>  Q  T  Q  K  T  E  N  K  K  K  I  I  S  K  K  K  K  A  F  F  S  D  F  F  N  R  N  S  *  T  F  I  F  L  V  N  L  M  A  *  I  L  I  R  K  M  G  N  V  T  A  G  V  A  A  K  F  A  F  F  P  P  E  P  P  T  Y  E  V  F  K  D  E  D  G  R  V  C  F  S  G  I  T  A  D  K  N  V  N  V  H  L  L  D  T  K  G  G  N  K  I  V  A  T  F  W  K  H  P  S  G  R  F  T  L  L  Y  S  H  G  N  A  A  D  L  G  Q  M  I  D  L  F  V  E  L  R  A  H  L  R  V  N  I  M  C :   Y  D  Y  T  G  Y  G  G  S  S  G  K  :  P  S  E  F  N  T  Y  H  D  I  E  A  V  Y  N  C  L  K  S  E  Y  S  I  K  Q  E  D  I  I  L  Y  G  Q  S  V  G  S  G  P  T  L  H  L  A  S  R  L </second_frame>
            <third_frame>   K  P  K  K  Q  R  T  K  K  K  S  Y  P  K  K  K  K  L  F  S  L  I  F  S  T  E  I  L  E  L  L  F  F  W  S  I  *  W  P  K  S  *  L  G  K  W  G  M  *  Q  Q  V  *  L  Q  N  L  H  F  F  H  Q  S  H  Q  H  M  K  Y  L  K  M  K  M  E  G  F  V  L  V  E  *  Q  L  I  R  M  *  M  F  I  C  *  I  Q  K  V  V  I  K  L  *  L  L  F  G  N  I  H  L  A  D  L  H  F  F  I  H  M  E  M  L  L  I  W  D  K  *  L  I  F  L  L  S  L  E  L  I  F  V  L  I  L  C   : A  M  I  T  R  D  M  V  D  L  Q  V  S :   H  L  S  S  T  R  T  T  T  *  K  L  S  I  I  V  *  R  V  N  T  A  L  S  K  R  I  S  S  Y  M  D  N  L  L  A  V  D  R  H  Y  T  W  H  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0111B06.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32963" stop="32650"/>
                    <exon start="31551" stop="31515"/>
                    <exon start="31327" stop="31187"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILIRKMGNVTAGVAAKFAFFPPEPPTYEVFKDEDGRVCFSGITADKNVNVHLLDTKGGNKIVATFWKHPSGRFTLLYSHGNAADLGQMIDLFVELRAHLRVNIMCYDYTGYGGSSGKPSEFNTYHDIEAVYNCLKSEYSIKQEDIILYGQSVGSGPTLHLASRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="43902" PGL_stop="39187"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43902" e_stop="43719"/>
            <exon e_start="43332" e_stop="43282"/>
            <exon e_start="41912" e_stop="41891"/>
            <exon e_start="41748" e_stop="41634"/>
            <exon e_start="41142" e_stop="41110"/>
            <exon e_start="40040" e_stop="39915"/>
            <exon e_start="39283" e_stop="39187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43902" e_stop="43719" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.960">
            <gDNA_intron_boundary i_start="43718" i_stop="43333" i_length="386"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43332" e_stop="43282" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="43281" i_stop="41913" i_length="1369"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41912" e_stop="41891" e_length="22"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.952">
            <gDNA_intron_boundary i_start="41890" i_stop="41749" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41748" e_stop="41634" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41633" i_stop="41143" i_length="491"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41142" e_stop="41110" e_length="33"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.810">
            <gDNA_intron_boundary i_start="41109" i_stop="40041" i_length="1069"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40040" e_stop="39915" e_length="126"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39914" i_stop="39284" i_length="631"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39283" e_stop="39187" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43902" stop="43719"/>
              <exon start="43332" stop="43282"/>
              <exon start="41912" stop="41891"/>
              <exon start="41748" stop="41634"/>
              <exon start="41142" stop="41110"/>
              <exon start="40040" stop="39962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43902" stop="43719"/>
              <exon start="43332" stop="43282"/>
              <exon start="41912" stop="41891"/>
              <exon start="41748" stop="41634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43858" stop="43719"/>
              <exon start="43332" stop="43282"/>
              <exon start="41912" stop="41891"/>
              <exon start="41748" stop="41634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43817" stop="43719"/>
              <exon start="43332" stop="43282"/>
              <exon start="41912" stop="41891"/>
              <exon start="41748" stop="41634"/>
              <exon start="41142" stop="41110"/>
              <exon start="40040" stop="39976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43332" stop="43282"/>
              <exon start="41912" stop="41891"/>
              <exon start="41748" stop="41634"/>
              <exon start="41142" stop="41110"/>
              <exon start="40040" stop="39915"/>
              <exon start="39283" stop="39187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319851" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGTTGCCCTCCGAAAATTTGTTGGCAAACACGTATATATGTTCAACGGTAGCACGTTGTTACACGCGCCGACTCAATTCCGTGGCATTACGGGCTCTGTCCGTCATCCAGCGCCGTCAAAACTTGTCGTCGGTCACTTCCCGATGGAATCTTCCGTCCGAATCGTTGTCGTCGGCGACGTC : CATGATGATTGGAACCTTGAAGAAGATAGGAAGGCTCTTCAACTCTTGAAG : CCAGATTTGGTGCTCTTTACAG : GGGATTTTGGGAATGAAAATGTGGATCTAGTCCGAAGCATAGCAGATCTAGAGATCACCAAAGCTGTTATTCTAGGGAACCATGACGCATGGAATACTCAAAAGTTCTCTGGGAA : GGAAAAAGATGCTGTTCAACTTCAGCTGGAATG : TCTTGGTGATGAGCATGTTGGTTACCGTCGAATGGATCTCCCTATGCTAAAACTCAGTATTGTTGGTGGACGACCTTTTTCTTGTGGTGGTAGGCCCTTATTCCGGAAACAGCTTCTCAAAGCAAG : GTATGGAGTCCGTGATATGGATGGAAGTGCTGAGAGAATCTTACAAGCTGCCATGGGCACTCCAGAGGATCATTCAATTATATTCCTTGCTCATAAT</gDNA_template>
            <first_frame> F  S  C  P  P  K  I  C  W  Q  T  R  I  Y  V  Q  R  *  H  V  V  T  R  A  D  S  I  P  W  H  Y  G  L  C  P  S  S  S  A  V  K  T  C  R  R  S  L  P  D  G  I  F  R  P  N  R  C  R  R  R  R   : P  *  *  L  E  P  *  R  R  *  E  G  S  S  T  L  E   : A  R  F  G  A  L  Y  R :   G  F  W  E  *  K  C  G  S  S  P  K  H  S  R  S  R  D  H  Q  S  C  Y  S  R  E  P  *  R  M  E  Y  S  K  V  L  W  E  :  G  K  R  C  C  S  T  S  A  G  M  :  S  W  *  *  A  C  W  L  P  S  N  G  S  P  Y  A  K  T  Q  Y  C  W  W  T  T  F  F  L  W  W  *  A  L  I  P  E  T  A  S  Q  S  K  :  V  W  S  P  *  Y  G  W  K  C  *  E  N  L  T  S  C  H  G  H  S  R  G  S  F  N  Y  I  P  C  S  *  </first_frame>
            <second_frame>  L  V  A  L  R  K  F  V  G  K  H  V  Y  M  F  N  G  S  T  L  L  H  A  P  T  Q  F  R  G  I  T  G  S  V  R  H  P  A  P  S  K  L  V  V  G  H  F  P  M  E  S  S  V  R  I  V  V  V  G  D  V  :  H  D  D  W  N  L  E  E  D  R  K  A  L  Q  L  L  K  :  P  D  L  V  L  F  T   : G  D  F  G  N  E  N  V  D  L  V  R  S  I  A  D  L  E  I  T  K  A  V  I  L  G  N  H  D  A  W  N  T  Q  K  F  S  G  K :   E  K  D  A  V  Q  L  Q  L  E  C :   L  G  D  E  H  V  G  Y  R  R  M  D  L  P  M  L  K  L  S  I  V  G  G  R  P  F  S  C  G  G  R  P  L  F  R  K  Q  L  L  K  A  R :   Y  G  V  R  D  M  D  G  S  A  E  R  I  L  Q  A  A  M  G  T  P  E  D  H  S  I  I  F  L  A  H  N </second_frame>
            <third_frame>   *  L  P  S  E  N  L  L  A  N  T  Y  I  C  S  T  V  A  R  C  Y  T  R  R  L  N  S  V  A  L  R  A  L  S  V  I  Q  R  R  Q  N  L  S  S  V  T  S  R  W  N  L  P  S  E  S  L  S  S  A  T  S :   M  M  I  G  T  L  K  K  I  G  R  L  F  N  S  *  S :   Q  I  W  C  S  L  Q  :  G  I  L  G  M  K  M  W  I  *  S  E  A  *  Q  I  *  R  S  P  K  L  L  F  *  G  T  M  T  H  G  I  L  K  S  S  L  G   : R  K  K  M  L  F  N  F  S  W  N   : V  L  V  M  S  M  L  V  T  V  E  W  I  S  L  C  *  N  S  V  L  L  V  D  D  L  F  L  V  V  V  G  P  Y  S  G  N  S  F  S  K  Q   : G  M  E  S  V  I  W  M  E  V  L  R  E  S  Y  K  L  P  W  A  L  Q  R  I  I  Q  L  Y  S  L  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0111B06.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43901" stop="43719"/>
                    <exon start="43332" stop="43282"/>
                    <exon start="41912" stop="41891"/>
                    <exon start="41748" stop="41634"/>
                    <exon start="41142" stop="41110"/>
                    <exon start="40040" stop="39915"/>
                    <exon start="39283" stop="39187"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVALRKFVGKHVYMFNGSTLLHAPTQFRGITGSVRHPAPSKLVVGHFPMESSVRIVVVGDVHDDWNLEEDRKALQLLKPDLVLFTGDFGNENVDLVRSIADLEITKAVILGNHDAWNTQKFSGKEKDAVQLQLECLGDEHVGYRRMDLPMLKLSIVGGRPFSCGGRPLFRKQLLKARYGVRDMDGSAERILQAAMGTPEDHSIIFLAHN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43841" e_stop="43719"/>
            <exon e_start="43332" e_stop="43300"/>
            <exon e_start="42509" e_stop="42503"/>
            <exon e_start="42135" e_stop="42104"/>
            <exon e_start="41912" e_stop="41891"/>
            <exon e_start="41748" e_stop="41634"/>
            <exon e_start="41142" e_stop="41110"/>
            <exon e_start="40040" e_stop="39985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.960" e_score="0.943"/>
          <exon-intron don_prob="1.000" acc_prob="0.695" e_score="0.970"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.571"/>
          <exon-intron don_prob="0.339" acc_prob="0.984" e_score="0.469"/>
          <exon-intron don_prob="0.998" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="0.913"/>
          <exon-intron don_prob="0.990" acc_prob="0.810" e_score="0.939"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="43841" e_stop="43719" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.960">
            <gDNA_intron_boundary i_start="43718" i_stop="43333" i_length="386"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="43332" e_stop="43300" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.695">
            <gDNA_intron_boundary i_start="43299" i_stop="42510" i_length="790"/>
          </intron>
          <exon e_serial="3" e_score="0.571">
            <gDNA_exon_boundary e_start="42509" e_stop="42503" e_length="7"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42502" i_stop="42136" i_length="367"/>
          </intron>
          <exon e_serial="4" e_score="0.469">
            <gDNA_exon_boundary e_start="42135" e_stop="42104" e_length="32"/>
          </exon>
          <intron i_serial="4" don_prob="0.339" acc_prob="0.984">
            <gDNA_intron_boundary i_start="42103" i_stop="41913" i_length="191"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41912" e_stop="41891" e_length="22"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.952">
            <gDNA_intron_boundary i_start="41890" i_stop="41749" i_length="142"/>
          </intron>
          <exon e_serial="6" e_score="0.913">
            <gDNA_exon_boundary e_start="41748" e_stop="41634" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41633" i_stop="41143" i_length="491"/>
          </intron>
          <exon e_serial="7" e_score="0.939">
            <gDNA_exon_boundary e_start="41142" e_stop="41110" e_length="33"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.810">
            <gDNA_intron_boundary i_start="41109" i_stop="40041" i_length="1069"/>
          </intron>
          <exon e_serial="8" e_score="0.911">
            <gDNA_exon_boundary e_start="40040" e_stop="39985" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43841" stop="43719"/>
              <exon start="43332" stop="43300"/>
              <exon start="42509" stop="42503"/>
              <exon start="42135" stop="42104"/>
              <exon start="41912" stop="41891"/>
              <exon start="41748" stop="41634"/>
              <exon start="41142" stop="41110"/>
              <exon start="40040" stop="39985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACACGCGCCGACTCAATTCCGTGGCATTACGGGCTCTGTCCGTCATCCAGCGCCGTCAAAACTTGTCGTCGGTCACTTCCCGATGGAATCTTCCGTCCGAATCGTTGTCGTCGGCGACGTC : CATGATGATTGGAACCTTGAAGAAGATAGGAAG : GTATTTA : GCGTACAACGTAACCATAAGAGATCGTGAAAT : CCAGATTTGGTGCTCTTTACAG : GGGATTTTGGGAATGAAAATGTGGATCTAGTCCGAAGCATAGCAGATCTAGAGATCACCAAAGCTGTTATTCTAGGGAACCATGACGCATGGAATACTCAAAAGTTCTCTGGGAA : GGAAAAAGATGCTGTTCAACTTCAGCTGGAATG : TCTTGGTGATGAGCATGTTGGTTACCGTCGAATGGATCTCCCTATGCTAAAACTCA</gDNA_template>
            <first_frame> L  H  A  P  T  Q  F  R  G  I  T  G  S  V  R  H  P  A  P  S  K  L  V  V  G  H  F  P  M  E  S  S  V  R  I  V  V  V  G  D  V  :  H  D  D  W  N  L  E  E  D  R  K  :  V  F   : S  V  Q  R  N  H  K  R  S  *  N  :  P  D  L  V  L  F  T   : G  D  F  G  N  E  N  V  D  L  V  R  S  I  A  D  L  E  I  T  K  A  V  I  L  G  N  H  D  A  W  N  T  Q  K  F  S  G  K :   E  K  D  A  V  Q  L  Q  L  E  C :   L  G  D  E  H  V  G  Y  R  R  M  D  L  P  M  L  K  L  </first_frame>
            <second_frame>  Y  T  R  R  L  N  S  V  A  L  R  A  L  S  V  I  Q  R  R  Q  N  L  S  S  V  T  S  R  W  N  L  P  S  E  S  L  S  S  A  T  S :   M  M  I  G  T  L  K  K  I  G  R :   Y  L  :  A  Y  N  V  T  I  R  D  R  E  I :   Q  I  W  C  S  L  Q  :  G  I  L  G  M  K  M  W  I  *  S  E  A  *  Q  I  *  R  S  P  K  L  L  F  *  G  T  M  T  H  G  I  L  K  S  S  L  G   : R  K  K  M  L  F  N  F  S  W  N   : V  L  V  M  S  M  L  V  T  V  E  W  I  S  L  C  *  N  S </second_frame>
            <third_frame>   T  R  A  D  S  I  P  W  H  Y  G  L  C  P  S  S  S  A  V  K  T  C  R  R  S  L  P  D  G  I  F  R  P  N  R  C  R  R  R  R   : P  *  *  L  E  P  *  R  R  *  E   : G  I  * :   R  T  T  *  P  *  E  I  V  K   : S  R  F  G  A  L  Y  R :   G  F  W  E  *  K  C  G  S  S  P  K  H  S  R  S  R  D  H  Q  S  C  Y  S  R  E  P  *  R  M  E  Y  S  K  V  L  W  E  :  G  K  R  C  C  S  T  S  A  G  M  :  S  W  *  *  A  C  W  L  P  S  N  G  S  P  Y  A  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0111B06.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43840" stop="43719"/>
                    <exon start="43332" stop="43300"/>
                    <exon start="42509" stop="42503"/>
                    <exon start="42135" stop="42104"/>
                    <exon start="41912" stop="41891"/>
                    <exon start="41748" stop="41719"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTRRLNSVALRALSVIQRRQNLSSVTSRWNLPSESLSSATSMMIGTLKKIGRYLAYNVTIRDREIQIWCSLQGILGMKMWI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0111B06.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42106" stop="42104"/>
                    <exon start="41912" stop="41891"/>
                    <exon start="41748" stop="41634"/>
                    <exon start="41142" stop="41110"/>
                    <exon start="40040" stop="39986"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPDLVLFTGDFGNENVDLVRSIADLEITKAVILGNHDAWNTQKFSGKEKDAVQLQLECLGDEHVGYRRMDLPMLKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="46273" PGL_stop="45185"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46273" e_stop="46117"/>
            <exon e_start="45886" e_stop="45736"/>
            <exon e_start="45602" e_stop="45185"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.420" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46273" e_stop="46117" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46116" i_stop="45887" i_length="230"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45886" e_stop="45736" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.420" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45735" i_stop="45603" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="45602" e_stop="45185" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46273" stop="46117"/>
              <exon start="45886" stop="45736"/>
              <exon start="45602" stop="45314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46271" stop="46117"/>
              <exon start="45886" stop="45736"/>
              <exon start="45602" stop="45185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAATATTCAAGATTAACAATTATTCATAGAGATATAAAAGCCAGCAATATTCTATTGGACTTACAAATGAAACCAAAGATTTCTGACTTTGGAATGGCAAGAATTTTCAAGAAAGATGCAATTGAAGCAAATACCAAAAAAATAGTTGGAACAAA : GGGTTATATTCCACCTGAATATGCAATTGAAGGCAGATATTCAACAAAATCAGATGTTTTCAGTTTTGGAGTACTTCTTCTTCAAATCATAAGTGGAAAAAAGAATACATGTTACTATGGTCCAGATGACAATTTAGACCTTCTTGATTAT : GCATTTGAGATGTTTAAAGATGGTGATGGCATGGAATTTATGGATCAATCGCTTGATGATACAACACATTCTTGTAAACTATTAAAATGCATGCAAATTGCATTATTATGTGTCCAAAAAAATCCATTGGATAGGCCTACAATGTTGGAAATTTCATCTATGTTCAAAAATATTGAAAATTTAGTTATGAATACTCCAAAGAGGCCTGCATTTTCTACAAGACAAGATGAAGATCAAGTTGGCAATAGTATTCCAAATGGGGAATTTGATATTGACAATGCAACAATTACACAATTGGTTGCAAGATGATATATGCTACTCCTTGCAATTGATTTAATATGATTAGTAGGTAATATGTCTTATTTTTAAATTGCGAATCCCGAGTATTTATGGATGTTGGCTACCTAGTCGTATTTAT</gDNA_template>
            <first_frame> K  N  I  Q  D  *  Q  L  F  I  E  I  *  K  P  A  I  F  Y  W  T  Y  K  *  N  Q  R  F  L  T  L  E  W  Q  E  F  S  R  K  M  Q  L  K  Q  I  P  K  K  *  L  E  Q   : R  V  I  F  H  L  N  M  Q  L  K  A  D  I  Q  Q  N  Q  M  F  S  V  L  E  Y  F  F  F  K  S  *  V  E  K  R  I  H  V  T  M  V  Q  M  T  I  *  T  F  L  I  M :   H  L  R  C  L  K  M  V  M  A  W  N  L  W  I  N  R  L  M  I  Q  H  I  L  V  N  Y  *  N  A  C  K  L  H  Y  Y  V  S  K  K  I  H  W  I  G  L  Q  C  W  K  F  H  L  C  S  K  I  L  K  I  *  L  *  I  L  Q  R  G  L  H  F  L  Q  D  K  M  K  I  K  L  A  I  V  F  Q  M  G  N  L  I  L  T  M  Q  Q  L  H  N  W  L  Q  D  D  I  C  Y  S  L  Q  L  I  *  Y  D  *  *  V  I  C  L  I  F  K  L  R  I  P  S  I  Y  G  C  W  L  P  S  R  I  Y </first_frame>
            <second_frame>  R  I  F  K  I  N  N  Y  S  *  R  Y  K  S  Q  Q  Y  S  I  G  L  T  N  E  T  K  D  F  *  L  W  N  G  K  N  F  Q  E  R  C  N  *  S  K  Y  Q  K  N  S  W  N  K  :  G  L  Y  S  T  *  I  C  N  *  R  Q  I  F  N  K  I  R  C  F  Q  F  W  S  T  S  S  S  N  H  K  W  K  K  E  Y  M  L  L  W  S  R  *  Q  F  R  P  S  *  L   : C  I  *  D  V  *  R  W  *  W  H  G  I  Y  G  S  I  A  *  *  Y  N  T  F  L  *  T  I  K  M  H  A  N  C  I  I  M  C  P  K  K  S  I  G  *  A  Y  N  V  G  N  F  I  Y  V  Q  K  Y  *  K  F  S  Y  E  Y  S  K  E  A  C  I  F  Y  K  T  R  *  R  S  S  W  Q  *  Y  S  K  W  G  I  *  Y  *  Q  C  N  N  Y  T  I  G  C  K  M  I  Y  A  T  P  C  N  *  F  N  M  I  S  R  *  Y  V  L  F  L  N  C  E  S  R  V  F  M  D  V  G  Y  L  V  V  F   </second_frame>
            <third_frame>   E  Y  S  R  L  T  I  I  H  R  D  I  K  A  S  N  I  L  L  D  L  Q  M  K  P  K  I  S  D  F  G  M  A  R  I  F  K  K  D  A  I  E  A  N  T  K  K  I  V  G  T  K :   G  Y  I  P  P  E  Y  A  I  E  G  R  Y  S  T  K  S  D  V  F  S  F  G  V  L  L  L  Q  I  I  S  G  K  K  N  T  C  Y  Y  G  P  D  D  N  L  D  L  L  D  Y  :  A  F  E  M  F  K  D  G  D  G  M  E  F  M  D  Q  S  L  D  D  T  T  H  S  C  K  L  L  K  C  M  Q  I  A  L  L  C  V  Q  K  N  P  L  D  R  P  T  M  L  E  I  S  S  M  F  K  N  I  E  N  L  V  M  N  T  P  K  R  P  A  F  S  T  R  Q  D  E  D  Q  V  G  N  S  I  P  N  G  E  F  D  I  D  N  A  T  I  T  Q  L  V  A  R  *  Y  M  L  L  L  A  I  D  L  I  *  L  V  G  N  M  S  Y  F  *  I  A  N  P  E  Y  L  W  M  L  A  T  *  S  Y  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0111B06.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46271" stop="46117"/>
                    <exon start="45886" stop="45736"/>
                    <exon start="45602" stop="45294"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYSRLTIIHRDIKASNILLDLQMKPKISDFGMARIFKKDAIEANTKKIVGTKGYIPPEYAIEGRYSTKSDVFSFGVLLLQIISGKKNTCYYGPDDNLDLLDYAFEMFKDGDGMEFMDQSLDDTTHSCKLLKCMQIALLCVQKNPLDRPTMLEISSMFKNIENLVMNTPKRPAFSTRQDEDQVGNSIPNGEFDIDNATITQLVAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="54627" PGL_stop="52273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54627" e_stop="54188"/>
            <exon e_start="52496" e_stop="52273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54627" e_stop="54188" e_length="440"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54187" i_stop="52497" i_length="1691"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52496" e_stop="52273" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54627" stop="54188"/>
              <exon start="52496" stop="52282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379667" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54626" stop="54188"/>
              <exon start="52496" stop="52273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54626" stop="54188"/>
              <exon start="52496" stop="52477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209171" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCAAACTTTTCTTCTTATTTTTCTTCTTCCAACAATTAATTTTCTCTAATGGACAAAATAATGTTGTTAAAGGAGGGTATTGGTTTAGGGATAGTGGATTATCTTTAAACAACATTGATTCAACTCTTTTCACACATTTATTTTGTGCGTTCGCAAACCTTAACCCTCAATCGAATCAATTAGTCATATCGCCAGAAGATCAAGATTCGTTCAGACAATTTACGAGCATAGTTATGAGGAAGAATCCGTCGGTTAAAACTTTGTTGTCCATAGGGGGAGGGAGAGCTAATAGAACAGCTTATGGAATCATGGCAAGAACAACAAATTCAAGAAAAAGTTTTATTGATTCATCAATAAAATTGGCTAGACAATTGGGATTTCATGGACTTGATCTTGATTGGGAATATCCTGAATCAACTATAGACATGACAAATTTAG : CTTCACAAACATGGGGAGCATCACCTCAAGCTGTGAAATGATGGAATAATTCTATTTGTGTGTTTAATTTGTCACGTAGTATTTCTTATAATAAAGTGACAAATATGTGAACCATGACATATAAAATAAATAAAAATCCATGTACCATATTGGATGTTTTAGTTTATTACACTTAAAAGTGAAATCATAAAGTAAAAAAATATTATTAATTAATTATGAATTCC</gDNA_template>
            <first_frame> H  Q  T  F  L  L  I  F  L  L  P  T  I  N  F  L  *  W  T  K  *  C  C  *  R  R  V  L  V  *  G  *  W  I  I  F  K  Q  H  *  F  N  S  F  H  T  F  I  L  C  V  R  K  P  *  P  S  I  E  S  I  S  H  I  A  R  R  S  R  F  V  Q  T  I  Y  E  H  S  Y  E  E  E  S  V  G  *  N  F  V  V  H  R  G  R  E  S  *  *  N  S  L  W  N  H  G  K  N  N  K  F  K  K  K  F  Y  *  F  I  N  K  I  G  *  T  I  G  I  S  W  T  *  S  *  L  G  I  S  *  I  N  Y  R  H  D  K  F  S :   F  T  N  M  G  S  I  T  S  S  C  E  M  M  E  *  F  Y  L  C  V  *  F  V  T  *  Y  F  L  *  *  S  D  K  Y  V  N  H  D  I  *  N  K  *  K  S  M  Y  H  I  G  C  F  S  L  L  H  L  K  V  K  S  *  S  K  K  I  L  L  I  N  Y  E  F  </first_frame>
            <second_frame>  I  K  L  F  F  L  F  F  F  F  Q  Q  L  I  F  S  N  G  Q  N  N  V  V  K  G  G  Y  W  F  R  D  S  G  L  S  L  N  N  I  D  S  T  L  F  T  H  L  F  C  A  F  A  N  L  N  P  Q  S  N  Q  L  V  I  S  P  E  D  Q  D  S  F  R  Q  F  T  S  I  V  M  R  K  N  P  S  V  K  T  L  L  S  I  G  G  G  R  A  N  R  T  A  Y  G  I  M  A  R  T  T  N  S  R  K  S  F  I  D  S  S  I  K  L  A  R  Q  L  G  F  H  G  L  D  L  D  W  E  Y  P  E  S  T  I  D  M  T  N  L   : A  S  Q  T  W  G  A  S  P  Q  A  V  K  *  W  N  N  S  I  C  V  F  N  L  S  R  S  I  S  Y  N  K  V  T  N  M  *  T  M  T  Y  K  I  N  K  N  P  C  T  I  L  D  V  L  V  Y  Y  T  *  K  *  N  H  K  V  K  K  Y  Y  *  L  I  M  N  S </second_frame>
            <third_frame>   S  N  F  S  S  Y  F  S  S  S  N  N  *  F  S  L  M  D  K  I  M  L  L  K  E  G  I  G  L  G  I  V  D  Y  L  *  T  T  L  I  Q  L  F  S  H  I  Y  F  V  R  S  Q  T  L  T  L  N  R  I  N  *  S  Y  R  Q  K  I  K  I  R  S  D  N  L  R  A  *  L  *  G  R  I  R  R  L  K  L  C  C  P  *  G  E  G  E  L  I  E  Q  L  M  E  S  W  Q  E  Q  Q  I  Q  E  K  V  L  L  I  H  Q  *  N  W  L  D  N  W  D  F  M  D  L  I  L  I  G  N  I  L  N  Q  L  *  T  *  Q  I  *  :  L  H  K  H  G  E  H  H  L  K  L  *  N  D  G  I  I  L  F  V  C  L  I  C  H  V  V  F  L  I  I  K  *  Q  I  C  E  P  *  H  I  K  *  I  K  I  H  V  P  Y  W  M  F  *  F  I  T  L  K  S  E  I  I  K  *  K  N  I  I  N  *  L  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0111B06.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54626" stop="54188"/>
                    <exon start="52496" stop="52456"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKLFFLFFFFQQLIFSNGQNNVVKGGYWFRDSGLSLNNIDSTLFTHLFCAFANLNPQSNQLVISPEDQDSFRQFTSIVMRKNPSVKTLLSIGGGRANRTAYGIMARTTNSRKSFIDSSIKLARQLGFHGLDLDWEYPESTIDMTNLASQTWGASPQAVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="64192" PGL_stop="64835"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64192" e_stop="64366"/>
            <exon e_start="64589" e_stop="64835"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64192" e_stop="64366" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64367" i_stop="64588" i_length="222"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="64589" e_stop="64835" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64192" stop="64366"/>
              <exon start="64589" stop="64835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540303" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64192" stop="64366"/>
              <exon start="64589" stop="64630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64193" stop="64366"/>
              <exon start="64589" stop="64625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGTATATGATTCTGCTACTGTTTCTGCTTATTCTGTGGCTGGAACTTCTTGGATTGGCTTTGATGACACTAACTCTGTTGCAATGAAGTTACACTATGCTCAATCACAAAGACTTAGAGGCTACTTCTTTTGGGCTGTTGCTGGTGATAAAGATTGGAAAATCTCAACAACAG : CTAAGCAATCATGGATTATTTCCTAAGAGATGAAGCGGGGGGGGGGGGGGGGGGGAATGACTCTTCCTTTGAACTTATATATATTTTGTTTGTGGAAGTGTATTGAAGCTGAATAGTTCATCTTCTTTTTATTTATGCACTATATATATATATATATATATATGTTGTATCATTTAGTTATATGTACTTTTCAGCTAATAACGTTTATTTCAAGTGTAAGAGAGAATACAAACTTTTAACTTAGAAA</gDNA_template>
            <first_frame> V  V  Y  D  S  A  T  V  S  A  Y  S  V  A  G  T  S  W  I  G  F  D  D  T  N  S  V  A  M  K  L  H  Y  A  Q  S  Q  R  L  R  G  Y  F  F  W  A  V  A  G  D  K  D  W  K  I  S  T  T   : A  K  Q  S  W  I  I  S  *  E  M  K  R  G  G  G  G  G  G  M  T  L  P  L  N  L  Y  I  F  C  L  W  K  C  I  E  A  E  *  F  I  F  F  L  F  M  H  Y  I  Y  I  Y  I  Y  M  L  Y  H  L  V  I  C  T  F  Q  L  I  T  F  I  S  S  V  R  E  N  T  N  F  *  L  R   </first_frame>
            <second_frame>  L  Y  M  I  L  L  L  F  L  L  I  L  W  L  E  L  L  G  L  A  L  M  T  L  T  L  L  Q  *  S  Y  T  M  L  N  H  K  D  L  E  A  T  S  F  G  L  L  L  V  I  K  I  G  K  S  Q  Q  Q  :  L  S  N  H  G  L  F  P  K  R  *  S  G  G  G  G  G  G  E  *  L  F  L  *  T  Y  I  Y  F  V  C  G  S  V  L  K  L  N  S  S  S  S  F  Y  L  C  T  I  Y  I  Y  I  Y  I  C  C  I  I  *  L  Y  V  L  F  S  *  *  R  L  F  Q  V  *  E  R  I  Q  T  F  N  L  E  </second_frame>
            <third_frame>   C  I  *  F  C  Y  C  F  C  L  F  C  G  W  N  F  L  D  W  L  *  *  H  *  L  C  C  N  E  V  T  L  C  S  I  T  K  T  *  R  L  L  L  L  G  C  C  W  *  *  R  L  E  N  L  N  N  S :   *  A  I  M  D  Y  F  L  R  D  E  A  G  G  G  G  G  G  N  D  S  S  F  E  L  I  Y  I  L  F  V  E  V  Y  *  S  *  I  V  H  L  L  F  I  Y  A  L  Y  I  Y  I  Y  I  Y  V  V  S  F  S  Y  M  Y  F  S  A  N  N  V  Y  F  K  C  K  R  E  Y  K  L  L  T  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0111B06.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64192" stop="64366"/>
                    <exon start="64589" stop="64614"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVYDSATVSAYSVAGTSWIGFDDTNSVAMKLHYAQSQRLRGYFFWAVAGDKDWKISTTAKQSWIIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="74419" PGL_stop="69146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74419" e_stop="74316"/>
            <exon e_start="73069" e_stop="72988"/>
            <exon e_start="71817" e_stop="71743"/>
            <exon e_start="71641" e_stop="71605"/>
            <exon e_start="70959" e_stop="70876"/>
            <exon e_start="70781" e_stop="70721"/>
            <exon e_start="70594" e_stop="70488"/>
            <exon e_start="70292" e_stop="70227"/>
            <exon e_start="69637" e_stop="69146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.407" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.830" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74419" e_stop="74316" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.874">
            <gDNA_intron_boundary i_start="74315" i_stop="73070" i_length="1246"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73069" e_stop="72988" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72987" i_stop="71818" i_length="1170"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71817" e_stop="71743" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.964">
            <gDNA_intron_boundary i_start="71742" i_stop="71642" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71641" e_stop="71605" e_length="37"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="71604" i_stop="70960" i_length="645"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70959" e_stop="70876" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.857">
            <gDNA_intron_boundary i_start="70875" i_stop="70782" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70781" e_stop="70721" e_length="61"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="70720" i_stop="70595" i_length="126"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70594" e_stop="70488" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.407">
            <gDNA_intron_boundary i_start="70487" i_stop="70293" i_length="195"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70292" e_stop="70227" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.830">
            <gDNA_intron_boundary i_start="70226" i_stop="69638" i_length="589"/>
          </intron>
          <exon e_serial="9" e_score="0.982">
            <gDNA_exon_boundary e_start="69637" e_stop="69146" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74419" stop="74316"/>
              <exon start="73069" stop="72988"/>
              <exon start="71817" stop="71743"/>
              <exon start="71641" stop="71605"/>
              <exon start="70959" stop="70876"/>
              <exon start="70781" stop="70721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74415" stop="74316"/>
              <exon start="73069" stop="72988"/>
              <exon start="71817" stop="71743"/>
              <exon start="71641" stop="71605"/>
              <exon start="70959" stop="70876"/>
              <exon start="70781" stop="70721"/>
              <exon start="70594" stop="70488"/>
              <exon start="70292" stop="70227"/>
              <exon start="69637" stop="69512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71776" stop="71743"/>
              <exon start="71641" stop="71605"/>
              <exon start="70959" stop="70876"/>
              <exon start="70781" stop="70721"/>
              <exon start="70594" stop="70488"/>
              <exon start="70292" stop="70227"/>
              <exon start="69637" stop="69468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70959" stop="70876"/>
              <exon start="70781" stop="70721"/>
              <exon start="70594" stop="70488"/>
              <exon start="70292" stop="70227"/>
              <exon start="69637" stop="69146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70946" stop="70876"/>
              <exon start="70781" stop="70721"/>
              <exon start="70594" stop="70488"/>
              <exon start="70292" stop="70227"/>
              <exon start="69637" stop="69445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70946" stop="70876"/>
              <exon start="70781" stop="70721"/>
              <exon start="70594" stop="70488"/>
              <exon start="70292" stop="70227"/>
              <exon start="69637" stop="69457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70946" stop="70876"/>
              <exon start="70781" stop="70721"/>
              <exon start="70594" stop="70488"/>
              <exon start="70292" stop="70227"/>
              <exon start="69637" stop="69461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70946" stop="70876"/>
              <exon start="70781" stop="70721"/>
              <exon start="70594" stop="70488"/>
              <exon start="70292" stop="70235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70946" stop="70876"/>
              <exon start="70781" stop="70721"/>
              <exon start="70594" stop="70488"/>
              <exon start="70292" stop="70244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70935" stop="70876"/>
              <exon start="70781" stop="70721"/>
              <exon start="70594" stop="70488"/>
              <exon start="70292" stop="70227"/>
              <exon start="69637" stop="69523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCTTTCAAAATTGCACCAAAATGCCTCGAGCATCAAAGAGAAAATCTGACACCCCCAAATCTACTTCTGTCAAATCTGCTCGCTCGGAGTCTATCACAACTG : CTTCAAGCAAGACTACGAAGTTTGGATTGTCCGTTGATAATCTTTTTCAGAAGTATGCCAATAAGCTGCTAGGCATGATCGA : TCCAGAGGGGATTGAGGCACTTTGCTCAGATCTTGGAGTAGACTACACAAATGTCAAAATTTTGATGCTCGCTTG : GAAATTGAAAGCTGAAAAGCAGGGATATTTTACTCAG : GATGAATGGAGAAAAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAG : GTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTG : AGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAG : AATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAG : GTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGATTCATAACAGCTGCATCATTCAGCGGGAGGCTGGTTTTCTTTCTGCTACAGAACTACAAGCCTGAGGAGGATTCAACACATTTCTGTCGAAGGGGATATACTAAAATTTCTTCCTTGAAGAACGCTTGTAGGAACCTTTTTAATTTTTCGTCTTAGTTACAAACGAAATGTAGCTGCTATTTTTTCTCTGTCCAACTTCTTGATTTTGGAACTTCACTAGTAACATAGTGATATGGATCATTTGATCCTTATATGGTAGTCATACATGTGAATGGAGGTTAAAAAAAACAATATGTTGAAGTGAAATTGAATGTGGTTTATT</gDNA_template>
            <first_frame> E  L  S  K  L  H  Q  N  A  S  S  I  K  E  K  I  *  H  P  Q  I  Y  F  C  Q  I  C  S  L  G  V  Y  H  N  C :   F  K  Q  D  Y  E  V  W  I  V  R  *  *  S  F  S  E  V  C  Q  *  A  A  R  H  D  R  :  S  R  G  D  *  G  T  L  L  R  S  W  S  R  L  H  K  C  Q  N  F  D  A  R  L  :  E  I  E  S  *  K  A  G  I  F  Y  S   : G  *  M  E  K  R  F  K  R  S  P  G  *  Y  D  *  Q  I  E  K  S  P  A  K  I  G  S  R   : G  Y  D  A  *  K  F  *  G  F  L  F  L  R  L  P  L  L  P  Y  * :   G  *  A  E  V  C  G  H  R  E  H  L  S  T  D  *  S  C  S  G  A  P  I  S  C  S  G  *  L  I  *  *  V  S  Q   : E  S  D  *  L  *  G  D  Q  R  G  S  M  D  E  F  S  S  V  L  S  R   : G  *  L  S  R  P  *  K  L  *  S  R  P  S  M  A  C  D  F  G  *  F  C  *  V  D  E  R  K  T  K  V  I  C  A  V  E  F  L  *  M  L  T  K  R  I  *  S  V  C  T  G  L  L  L  A  *  F  I  T  A  A  S  F  S  G  R  L  V  F  F  L  L  Q  N  Y  K  P  E  E  D  S  T  H  F  C  R  R  G  Y  T  K  I  S  S  L  K  N  A  C  R  N  L  F  N  F  S  S  *  L  Q  T  K  C  S  C  Y  F  F  S  V  Q  L  L  D  F  G  T  S  L  V  T  *  *  Y  G  S  F  D  P  Y  M  V  V  I  H  V  N  G  G  *  K  K  Q  Y  V  E  V  K  L  N  V  V  Y  </first_frame>
            <second_frame>  S  F  Q  N  C  T  K  M  P  R  A  S  K  R  K  S  D  T  P  K  S  T  S  V  K  S  A  R  S  E  S  I  T  T   : A  S  S  K  T  T  K  F  G  L  S  V  D  N  L  F  Q  K  Y  A  N  K  L  L  G  M  I  D :   P  E  G  I  E  A  L  C  S  D  L  G  V  D  Y  T  N  V  K  I  L  M  L  A  W :   K  L  K  A  E  K  Q  G  Y  F  T  Q  :  D  E  W  R  K  G  L  K  D  L  Q  V  D  T  I  N  K  L  K  K  A  L  P  K  L  E  A  E  :  V  M  M  P  E  N  F  E  D  F  Y  S  Y  A  F  R  Y  C  L  T   : E  D  K  Q  K  C  V  D  I  E  S  I  C  L  L  I  D  L  V  L  G  P  Q  F  R  A  Q  V  D  S  F  S  E  F  L  K  :  N  Q  T  D  Y  K  V  I  N  V  D  Q  W  M  N  F  L  R  F  C  Q  E  :  V  S  F  P  D  L  E  N  Y  D  L  D  Q  A  W  P  V  I  L  D  N  F  V  E  W  M  R  E  K  Q  K  *  S  A  L  L  S  S  C  K  C  *  R  K  E  F  E  V  C  A  R  D  F  C  L  H  D  S  *  Q  L  H  H  S  A  G  G  W  F  S  F  C  Y  R  T  T  S  L  R  R  I  Q  H  I  S  V  E  G  D  I  L  K  F  L  P  *  R  T  L  V  G  T  F  L  I  F  R  L  S  Y  K  R  N  V  A  A  I  F  S  L  S  N  F  L  I  L  E  L  H  *  *  H  S  D  M  D  H  L  I  L  I  W  *  S  Y  M  *  M  E  V  K  K  N  N  M  L  K  *  N  *  M  W  F  I </second_frame>
            <third_frame>   A  F  K  I  A  P  K  C  L  E  H  Q  R  E  N  L  T  P  P  N  L  L  L  S  N  L  L  A  R  S  L  S  Q  L  :  L  Q  A  R  L  R  S  L  D  C  P  L  I  I  F  F  R  S  M  P  I  S  C  *  A  *  S   : I  Q  R  G  L  R  H  F  A  Q  I  L  E  *  T  T  Q  M  S  K  F  *  C  S  L   : G  N  *  K  L  K  S  R  D  I  L  L  R :   M  N  G  E  K  V  *  K  I  S  R  L  I  R  L  T  N  *  K  K  P  C  Q  N  W  K  Q  R :   L  *  C  L  K  I  L  R  I  F  I  P  T  P  S  V  T  A  L  L  :  R  I  S  R  S  V  W  T  S  R  A  F  V  Y  *  L  I  L  F  W  G  P  N  F  V  L  R  L  T  H  L  V  S  F  S  R :   I  R  L  I  I  R  *  S  T  W  I  N  G  *  I  F  F  G  F  V  K  R :   L  A  F  Q  T  L  K  T  M  I  S  T  K  H  G  L  *  F  W  I  I  L  L  S  G  *  E  K  N  K  S  D  L  R  C  *  V  L  V  N  A  N  E  K  N  L  K  C  V  H  G  T  F  A  C  M  I  H  N  S  C  I  I  Q  R  E  A  G  F  L  S  A  T  E  L  Q  A  *  G  G  F  N  T  F  L  S  K  G  I  Y  *  N  F  F  L  E  E  R  L  *  E  P  F  *  F  F  V  L  V  T  N  E  M  *  L  L  F  F  L  C  P  T  S  *  F  W  N  F  T  S  N  I  V  I  W  I  I  *  S  L  Y  G  S  H  T  C  E  W  R  L  K  K  T  I  C  *  S  E  I  E  C  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0111B06.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74418" stop="74316"/>
                    <exon start="73069" stop="72988"/>
                    <exon start="71817" stop="71743"/>
                    <exon start="71641" stop="71605"/>
                    <exon start="70959" stop="70876"/>
                    <exon start="70781" stop="70721"/>
                    <exon start="70594" stop="70488"/>
                    <exon start="70292" stop="70227"/>
                    <exon start="69637" stop="69542"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFQNCTKMPRASKRKSDTPKSTSVKSARSESITTASSKTTKFGLSVDNLFQKYANKLLGMIDPEGIEALCSDLGVDYTNVKILMLAWKLKAEKQGYFTQDEWRKGLKDLQVDTINKLKKALPKLEAEVMMPENFEDFYSYAFRYCLTEDKQKCVDIESICLLIDLVLGPQFRAQVDSFSEFLKNQTDYKVINVDQWMNFLRFCQEVSFPDLENYDLDQAWPVILDNFVEWMREKQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74419" e_stop="74316"/>
            <exon e_start="73069" e_stop="72988"/>
            <exon e_start="71817" e_stop="71743"/>
            <exon e_start="71641" e_stop="71605"/>
            <exon e_start="70959" e_stop="70876"/>
            <exon e_start="70781" e_stop="70721"/>
            <exon e_start="70594" e_stop="70488"/>
            <exon e_start="70292" e_stop="70227"/>
            <exon e_start="69632" e_stop="69449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.407" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74419" e_stop="74316" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.874">
            <gDNA_intron_boundary i_start="74315" i_stop="73070" i_length="1246"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73069" e_stop="72988" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72987" i_stop="71818" i_length="1170"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71817" e_stop="71743" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.964">
            <gDNA_intron_boundary i_start="71742" i_stop="71642" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71641" e_stop="71605" e_length="37"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="71604" i_stop="70960" i_length="645"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70959" e_stop="70876" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.857">
            <gDNA_intron_boundary i_start="70875" i_stop="70782" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70781" e_stop="70721" e_length="61"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="70720" i_stop="70595" i_length="126"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70594" e_stop="70488" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.407">
            <gDNA_intron_boundary i_start="70487" i_stop="70293" i_length="195"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70292" e_stop="70227" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70226" i_stop="69633" i_length="594"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69632" e_stop="69449" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74419" stop="74316"/>
              <exon start="73069" stop="72988"/>
              <exon start="71817" stop="71743"/>
              <exon start="71641" stop="71605"/>
              <exon start="70959" stop="70876"/>
              <exon start="70781" stop="70721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73021" stop="72988"/>
              <exon start="71817" stop="71743"/>
              <exon start="71641" stop="71605"/>
              <exon start="70959" stop="70876"/>
              <exon start="70781" stop="70721"/>
              <exon start="70594" stop="70488"/>
              <exon start="70292" stop="70227"/>
              <exon start="69632" stop="69449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70946" stop="70876"/>
              <exon start="70781" stop="70721"/>
              <exon start="70594" stop="70488"/>
              <exon start="70292" stop="70235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70946" stop="70876"/>
              <exon start="70781" stop="70721"/>
              <exon start="70594" stop="70488"/>
              <exon start="70292" stop="70244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236216" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCTTTCAAAATTGCACCAAAATGCCTCGAGCATCAAAGAGAAAATCTGACACCCCCAAATCTACTTCTGTCAAATCTGCTCGCTCGGAGTCTATCACAACTG : CTTCAAGCAAGACTACGAAGTTTGGATTGTCCGTTGATAATCTTTTTCAGAAGTATGCCAATAAGCTGCTAGGCATGATCGA : TCCAGAGGGGATTGAGGCACTTTGCTCAGATCTTGGAGTAGACTACACAAATGTCAAAATTTTGATGCTCGCTTG : GAAATTGAAAGCTGAAAAGCAGGGATATTTTACTCAG : GATGAATGGAGAAAAGGTTTAAAAGATCTCCAGGTTGATACGATTAACAAATTGAAAAAAGCCCTGCCAAAATTGGAAGCAGAG : GTTATGATGCCTGAAAATTTTGAGGATTTTTATTCCTACGCCTTCCGTTACTGCCTTACTG : AGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAG : AATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAG : CTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGATTCATAACAGCTGCATCAT</gDNA_template>
            <first_frame> E  L  S  K  L  H  Q  N  A  S  S  I  K  E  K  I  *  H  P  Q  I  Y  F  C  Q  I  C  S  L  G  V  Y  H  N  C :   F  K  Q  D  Y  E  V  W  I  V  R  *  *  S  F  S  E  V  C  Q  *  A  A  R  H  D  R  :  S  R  G  D  *  G  T  L  L  R  S  W  S  R  L  H  K  C  Q  N  F  D  A  R  L  :  E  I  E  S  *  K  A  G  I  F  Y  S   : G  *  M  E  K  R  F  K  R  S  P  G  *  Y  D  *  Q  I  E  K  S  P  A  K  I  G  S  R   : G  Y  D  A  *  K  F  *  G  F  L  F  L  R  L  P  L  L  P  Y  * :   G  *  A  E  V  C  G  H  R  E  H  L  S  T  D  *  S  C  S  G  A  P  I  S  C  S  G  *  L  I  *  *  V  S  Q   : E  S  D  *  L  *  G  D  Q  R  G  S  M  D  E  F  S  S  V  L  S  R   : A  F  Q  T  L  K  T  M  I  S  T  K  H  G  L  *  F  W  I  I  L  L  S  G  *  E  K  N  K  S  D  L  R  C  *  V  L  V  N  A  N  E  K  N  L  K  C  V  H  G  T  F  A  C  M  I  H  N  S  C  I   </first_frame>
            <second_frame>  S  F  Q  N  C  T  K  M  P  R  A  S  K  R  K  S  D  T  P  K  S  T  S  V  K  S  A  R  S  E  S  I  T  T   : A  S  S  K  T  T  K  F  G  L  S  V  D  N  L  F  Q  K  Y  A  N  K  L  L  G  M  I  D :   P  E  G  I  E  A  L  C  S  D  L  G  V  D  Y  T  N  V  K  I  L  M  L  A  W :   K  L  K  A  E  K  Q  G  Y  F  T  Q  :  D  E  W  R  K  G  L  K  D  L  Q  V  D  T  I  N  K  L  K  K  A  L  P  K  L  E  A  E  :  V  M  M  P  E  N  F  E  D  F  Y  S  Y  A  F  R  Y  C  L  T   : E  D  K  Q  K  C  V  D  I  E  S  I  C  L  L  I  D  L  V  L  G  P  Q  F  R  A  Q  V  D  S  F  S  E  F  L  K  :  N  Q  T  D  Y  K  V  I  N  V  D  Q  W  M  N  F  L  R  F  C  Q  E  :  L  S  R  P  *  K  L  *  S  R  P  S  M  A  C  D  F  G  *  F  C  *  V  D  E  R  K  T  K  V  I  C  A  V  E  F  L  *  M  L  T  K  R  I  *  S  V  C  T  G  L  L  L  A  *  F  I  T  A  A  S  </second_frame>
            <third_frame>   A  F  K  I  A  P  K  C  L  E  H  Q  R  E  N  L  T  P  P  N  L  L  L  S  N  L  L  A  R  S  L  S  Q  L  :  L  Q  A  R  L  R  S  L  D  C  P  L  I  I  F  F  R  S  M  P  I  S  C  *  A  *  S   : I  Q  R  G  L  R  H  F  A  Q  I  L  E  *  T  T  Q  M  S  K  F  *  C  S  L   : G  N  *  K  L  K  S  R  D  I  L  L  R :   M  N  G  E  K  V  *  K  I  S  R  L  I  R  L  T  N  *  K  K  P  C  Q  N  W  K  Q  R :   L  *  C  L  K  I  L  R  I  F  I  P  T  P  S  V  T  A  L  L  :  R  I  S  R  S  V  W  T  S  R  A  F  V  Y  *  L  I  L  F  W  G  P  N  F  V  L  R  L  T  H  L  V  S  F  S  R :   I  R  L  I  I  R  *  S  T  W  I  N  G  *  I  F  F  G  F  V  K  S :   F  P  D  L  E  N  Y  D  L  D  Q  A  W  P  V  I  L  D  N  F  V  E  W  M  R  E  K  Q  K  *  S  A  L  L  S  S  C  K  C  *  R  K  E  F  E  V  C  A  R  D  F  C  L  H  D  S  *  Q  L  H  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0111B06.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74418" stop="74316"/>
                    <exon start="73069" stop="72988"/>
                    <exon start="71817" stop="71743"/>
                    <exon start="71641" stop="71605"/>
                    <exon start="70959" stop="70876"/>
                    <exon start="70781" stop="70721"/>
                    <exon start="70594" stop="70488"/>
                    <exon start="70292" stop="70227"/>
                    <exon start="69632" stop="69618"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFQNCTKMPRASKRKSDTPKSTSVKSARSESITTASSKTTKFGLSVDNLFQKYANKLLGMIDPEGIEALCSDLGVDYTNVKILMLAWKLKAEKQGYFTQDEWRKGLKDLQVDTINKLKKALPKLEAEVMMPENFEDFYSYAFRYCLTEDKQKCVDIESICLLIDLVLGPQFRAQVDSFSEFLKNQTDYKVINVDQWMNFLRFCQELSRP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="74419" e_stop="74316"/>
            <exon e_start="73069" e_stop="72988"/>
            <exon e_start="71817" e_stop="71743"/>
            <exon e_start="71641" e_stop="71359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74419" e_stop="74316" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.874">
            <gDNA_intron_boundary i_start="74315" i_stop="73070" i_length="1246"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73069" e_stop="72988" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72987" i_stop="71818" i_length="1170"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71817" e_stop="71743" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.964">
            <gDNA_intron_boundary i_start="71742" i_stop="71642" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71641" e_stop="71359" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74419" stop="74316"/>
              <exon start="73069" stop="72988"/>
              <exon start="71817" stop="71743"/>
              <exon start="71641" stop="71359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74419" stop="74316"/>
              <exon start="73069" stop="72988"/>
              <exon start="71817" stop="71743"/>
              <exon start="71641" stop="71412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCTTTCAAAATTGCACCAAAATGCCTCGAGCATCAAAGAGAAAATCTGACACCCCCAAATCTACTTCTGTCAAATCTGCTCGCTCGGAGTCTATCACAACTG : CTTCAAGCAAGACTACGAAGTTTGGATTGTCCGTTGATAATCTTTTTCAGAAGTATGCCAATAAGCTGCTAGGCATGATCGA : TCCAGAGGGGATTGAGGCACTTTGCTCAGATCTTGGAGTAGACTACACAAATGTCAAAATTTTGATGCTCGCTTG : GAAATTGAAAGCTGAAAAGCAGGGATATTTTACTCAGGTAAGATACTGCTATTTATTTGTTCAGCTTCCTCTTGAGTATAAACTAGGGGTTGCCAAATTAACCCATAAGAACATGATCTGCACAACCTGTTCAAGTTTGGTCTGATCATTGACACCGTCATTTATTAGCTCAACCTATTTCAAGCCATCTGAAAAATGAGCTTGATATGTACTCCAAATTGACATAAAAATCTCGCTAAAATATTTTCAAAAAGATAATTCTTTATTTGATATGTTATATATA</gDNA_template>
            <first_frame> E  L  S  K  L  H  Q  N  A  S  S  I  K  E  K  I  *  H  P  Q  I  Y  F  C  Q  I  C  S  L  G  V  Y  H  N  C :   F  K  Q  D  Y  E  V  W  I  V  R  *  *  S  F  S  E  V  C  Q  *  A  A  R  H  D  R  :  S  R  G  D  *  G  T  L  L  R  S  W  S  R  L  H  K  C  Q  N  F  D  A  R  L  :  E  I  E  S  *  K  A  G  I  F  Y  S  G  K  I  L  L  F  I  C  S  A  S  S  *  V  *  T  R  G  C  Q  I  N  P  *  E  H  D  L  H  N  L  F  K  F  G  L  I  I  D  T  V  I  Y  *  L  N  L  F  Q  A  I  *  K  M  S  L  I  C  T  P  N  *  H  K  N  L  A  K  I  F  S  K  R  *  F  F  I  *  Y  V  I  Y  </first_frame>
            <second_frame>  S  F  Q  N  C  T  K  M  P  R  A  S  K  R  K  S  D  T  P  K  S  T  S  V  K  S  A  R  S  E  S  I  T  T   : A  S  S  K  T  T  K  F  G  L  S  V  D  N  L  F  Q  K  Y  A  N  K  L  L  G  M  I  D :   P  E  G  I  E  A  L  C  S  D  L  G  V  D  Y  T  N  V  K  I  L  M  L  A  W :   K  L  K  A  E  K  Q  G  Y  F  T  Q  V  R  Y  C  Y  L  F  V  Q  L  P  L  E  Y  K  L  G  V  A  K  L  T  H  K  N  M  I  C  T  T  C  S  S  L  V  *  S  L  T  P  S  F  I  S  S  T  Y  F  K  P  S  E  K  *  A  *  Y  V  L  Q  I  D  I  K  I  S  L  K  Y  F  Q  K  D  N  S  L  F  D  M  L  Y  I </second_frame>
            <third_frame>   A  F  K  I  A  P  K  C  L  E  H  Q  R  E  N  L  T  P  P  N  L  L  L  S  N  L  L  A  R  S  L  S  Q  L  :  L  Q  A  R  L  R  S  L  D  C  P  L  I  I  F  F  R  S  M  P  I  S  C  *  A  *  S   : I  Q  R  G  L  R  H  F  A  Q  I  L  E  *  T  T  Q  M  S  K  F  *  C  S  L   : G  N  *  K  L  K  S  R  D  I  L  L  R  *  D  T  A  I  Y  L  F  S  F  L  L  S  I  N  *  G  L  P  N  *  P  I  R  T  *  S  A  Q  P  V  Q  V  W  S  D  H  *  H  R  H  L  L  A  Q  P  I  S  S  H  L  K  N  E  L  D  M  Y  S  K  L  T  *  K  S  R  *  N  I  F  K  K  I  I  L  Y  L  I  C  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0111B06.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74418" stop="74316"/>
                    <exon start="73069" stop="72988"/>
                    <exon start="71817" stop="71743"/>
                    <exon start="71641" stop="71497"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFQNCTKMPRASKRKSDTPKSTSVKSARSESITTASSKTTKFGLSVDNLFQKYANKLLGMIDPEGIEALCSDLGVDYTNVKILMLAWKLKAEKQGYFTQVRYCYLFVQLPLEYKLGVAKLTHKNMICTTCSSLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="70595" e_stop="70488"/>
            <exon e_start="70292" e_stop="70227"/>
            <exon e_start="69637" e_stop="69384"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.407" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.830" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70595" e_stop="70488" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.407">
            <gDNA_intron_boundary i_start="70487" i_stop="70293" i_length="195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70292" e_stop="70227" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.830">
            <gDNA_intron_boundary i_start="70226" i_stop="69638" i_length="589"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69637" e_stop="69384" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70595" stop="70488"/>
              <exon start="70292" stop="70227"/>
              <exon start="69637" stop="69384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285754" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGATAAGCAGAAGTGTGTGGACATCGAGAGCATTTGTCTACTGATTGATCTTGTTCTGGGGCCCCAATTTCGTGCTCAGGTTGACTCATTTAGTGAGTTTCTCAAG : AATCAGACTGATTATAAGGTGATCAACGTGGATCAATGGATGAATTTTCTTCGGTTTTGTCAAGAG : GTTAGCTTTCCAGACCTTGAAAACTATGATCTCGACCAAGCATGGCCTGTGATTTTGGATAATTTTGTTGAGTGGATGAGAGAAAAACAAAAGTGATCTGCGCTGTTGAGTTCTTGTAAATGCTAACGAAAAGAATTTGAAGTGTGTGCACGGGACTTTTGCTTGCATGATTCATAACAGCTGCATCATTCAGCGGGAGGCTGGTTTTCTTTCTGCTACAGAACTACAAGCCTGAGGAGGATTCAACACATTTC</gDNA_template>
            <first_frame> E  D  K  Q  K  C  V  D  I  E  S  I  C  L  L  I  D  L  V  L  G  P  Q  F  R  A  Q  V  D  S  F  S  E  F  L  K  :  N  Q  T  D  Y  K  V  I  N  V  D  Q  W  M  N  F  L  R  F  C  Q  E  :  V  S  F  P  D  L  E  N  Y  D  L  D  Q  A  W  P  V  I  L  D  N  F  V  E  W  M  R  E  K  Q  K  *  S  A  L  L  S  S  C  K  C  *  R  K  E  F  E  V  C  A  R  D  F  C  L  H  D  S  *  Q  L  H  H  S  A  G  G  W  F  S  F  C  Y  R  T  T  S  L  R  R  I  Q  H  I   </first_frame>
            <second_frame>  R  I  S  R  S  V  W  T  S  R  A  F  V  Y  *  L  I  L  F  W  G  P  N  F  V  L  R  L  T  H  L  V  S  F  S  R :   I  R  L  I  I  R  *  S  T  W  I  N  G  *  I  F  F  G  F  V  K  R :   L  A  F  Q  T  L  K  T  M  I  S  T  K  H  G  L  *  F  W  I  I  L  L  S  G  *  E  K  N  K  S  D  L  R  C  *  V  L  V  N  A  N  E  K  N  L  K  C  V  H  G  T  F  A  C  M  I  H  N  S  C  I  I  Q  R  E  A  G  F  L  S  A  T  E  L  Q  A  *  G  G  F  N  T  F  </second_frame>
            <third_frame>   G  *  A  E  V  C  G  H  R  E  H  L  S  T  D  *  S  C  S  G  A  P  I  S  C  S  G  *  L  I  *  *  V  S  Q   : E  S  D  *  L  *  G  D  Q  R  G  S  M  D  E  F  S  S  V  L  S  R   : G  *  L  S  R  P  *  K  L  *  S  R  P  S  M  A  C  D  F  G  *  F  C  *  V  D  E  R  K  T  K  V  I  C  A  V  E  F  L  *  M  L  T  K  R  I  *  S  V  C  T  G  L  L  L  A  *  F  I  T  A  A  S  F  S  G  R  L  V  F  F  L  L  Q  N  Y  K  P  E  E  D  S  T  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0111B06.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70595" stop="70488"/>
                    <exon start="70292" stop="70227"/>
                    <exon start="69637" stop="69542"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDKQKCVDIESICLLIDLVLGPQFRAQVDSFSEFLKNQTDYKVINVDQWMNFLRFCQEVSFPDLENYDLDQAWPVILDNFVEWMREKQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 53 chains have been computed
$ 
$ memory statistics:
$ 70936 bytes spliced alignments in total
$ 33 spliced alignments have been stored
$ 2149 bytes was the average size of a spliced alignment
$ 17872 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1787 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 59 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 07:35:04
-->
