<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-05 23:37:27"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730780" ref_strand="+" ref_description="SGN-E730780 [LA25AG01]">
      <seq>cgattaaagtagacgtacaaacaatttttttcctctgctcaacagctagcttcttctctacacccacccaccccactcccaccgacatcttctgtacagaaatggcaatgcttcaatggtttcctcttctttgcattttcttcatctcagcttctgctgctaaagttcaaaccaaggtaactgataatcctgctgatgagctggtatctgcccttaatagtaacagaactgcgaataaattatcctccttatacagtaaccctggcttggcatgcttggctctgcaatatataaaagcatacggaggtgattgtaaagtagttggagggccagatggaaagaaacctgctgaatctgaattcgcccaagaatttgcccccaactgtggtgtgcaggcatcatcgcttgctcaaataactggaagatttctcgcatgtcaatctaagtatgcggaaccttctgaagcattcaatgatattcttataagaaataccaagagtttggatattctctatagcaagaatcacactgaggttggtgctgctgtgagtggctccggtggtggtggcccctatttctggtgtgtactcttcagtaatggcaaaccaaagagtagcttttccacaggtggagttgagcctaaggtaagtagacctggatgcttcagtggttctaatgaccaatgcagtggtgctaatactttgtctcaaaccatatatctctggacaatcactgtangagcttccgttgcactgctttatgccttaggagtatgaaccatcangggatttgttttttggcttgattgaacggcctttttttttgttggggatgacttcaattttttgaattattattttgtgagtgttttcgaaaacatttccttctactaattgaaactacctctgaaaaataaatctgtatgttggtcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="40010" stop="42825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40309" g_stop="40479" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40480" i_stop="41757" i_length="1278">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41758" g_stop="42527" g_length="770"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="942" r_length="771" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-E730780" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>941</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40309" e_stop="40479"/>
          <exon e_start="41758" e_stop="42527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCGAAGTAGACGTACAAACAATTTTTTTCCTCTGCTCAACAGCTAGCTTCTTCTCTACACCCACCCACCCCACTCCCACCGACATCTTCTGTACAGAAATGGCAATGCTTCAATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAAGTAAGGATTCTTTATTCTTCTTTTTATTTTTTTTCATTTTTGAATGTGTTTTGCTACTTAAACTATCTTACTGTTGGATCTAATTAATGATTGAGTTTCAATTTTTGGTGTATAATTTATTGATTAAACTATAATGTGCTGATTGCTTAGTAATTTCAGCATTGAAAAATTTTGAGTTCATGCTAATAGGATTTCAGTTATAGTATATAAAGTGCATAGTTTCTGAGATTTATAGATCTACTTTTCTAGACTTTGTTTAATGATATTATCTGGTTGCTCCACAGTGATCAATATTAACTAGCAATGTGCAAATTTGAGTTTCCTTGGGAGGTATTCGGAAGGATTTGGAATATGTTATTTGTATAATTGTGAGATTACTAAAGATATATCTTACTAATAGAACATTGGTTTCTATGTGATTCTTGCCTTGTTAAGCTAGCTAATGGTATAGGAACATGTTGCATTTATGGCACTCTGACCAGAAACTATGTAGTCAACCTACAAATTCTGATTTTGTTGGTATGTTGCATTTATAGCACTGACTAGAAACTATTTAGTCAATCTGCAAATTCTGGTTTTGTGAATAGTTAGGGGAAGCTGCTCAAATGGCTTATCGGTCTTTGTAATTTGTGGTATTATGAGAAGATACCCGTAGAGATATAACACCTAGCCACAAAAGCCGTCTCATGTGAAGATGATTGCCTAATTCCATATAAGGAGATCACTAGTCATTCTCCAACTAATGTAGACTCTAATCCATTCCAACAATATGACACCAGGGTGTGACATCCCCAAAATTAGCTCATGAGGGGAGGATTGTCAAAGTACGTATAAGCAAACCATTAGTCTTTCCCTAGCAATTGTGGGACTCTAACCCACTAATGGAAGGACAATGCTCAAGTTGCTTTAATTTATGCCTTCGGATACTATGTGGGTGCCTAATCTTTTATCTTTGTCCTTTGCTTCTTATAACTCTCTTGCTAATATGGTTGTTGTTGATAATCTTTCCATGAGTGTGCTAGAATTATAGTCACATCCTAAATGATTTTTACTCTCCTTCTCTAGCTCTTCTAACATTAGTCAGTCTTAGATAATTGCTTGTACTTCCAATTATCGAAAGCATACTGACATGTGTCTCAAGCCTCTTGGGTTTAGATGTAATGTACGCTTGTCATTCTCAATGTGTATTCCTTCAAGCAGATATCTTCTCGATCTTGATTCACTATTATTGCCTTTATGATCAATCTCTAACACATATATTGGCCTGATAAACTACAGCCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGTAATGGCAAACCAAAGAGTAGCTTTTCCACAGGTGGAGTTGAGCCTAAGGTAAGTAGACCTGGATGCTTCAGTGGTTCTAATGACCAATGCAGTGGTGCTAATACTTTGTCTCAAACCATATATCTCTGGACAATCACTGTAGGAGCTTCCGTTGCACTGCTTTATGCCTTAGGAGTATGAACCATCAGGGGATTTGTTTTTTGGCTTGATTGAACGGCCTTTTTTTTTGTTGGGAATGACTTCAATTTTTTGAATTATTATTTTGTGAGTGTTTTCGAGAACATTTCCTTCTACTTATTGTAACTACCTCTG-AATATAAATCTGTATGTTGTTCAAATGAGAATC</genome_strand>
        <mrna_strand>CGATTAAAGTAGACGTACAAACAATTTTTTTCCTCTGCTCAACAGCTAGCTTCTTCTCTACACCCACCCACCCCACTCCCACCGACATCTTCTGTACAGAAATGGCAATGCTTCAATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGTAATGGCAAACCAAAGAGTAGCTTTTCCACAGGTGGAGTTGAGCCTAAGGTAAGTAGACCTGGATGCTTCAGTGGTTCTAATGACCAATGCAGTGGTGCTAATACTTTGTCTCAAACCATATATCTCTGGACAATCACTGTANGAGCTTCCGTTGCACTGCTTTATGCCTTAGGAGTATGAACCATCANGGGATTTGTTTTTTGGCTTGATTGAACGGCCTTTTTTTTTGTTGGGGATGACTTCAATTTTTTGAATTATTATTTTGTGAGTGTTTTCGAAAACATTTCCTTCTACTAATTGAAACTACCTCTGAAAAATAAATCTGTATGTTGGTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711931" ref_strand="+" ref_description="SGN-E711931 [FB03BF09]">
      <seq>cgctagcttcttctctacacccacccaccccactcccaccgacatcttctgtacagaaatggcaatgcttcaatggtttcctcttctttgcattttcttcatctcagcttctgctgctaaagttcaaaccaaggtaactgataatcctgctgatgagctggtatctgcccttaatagtaacagaactgcgaataaattatcctccttatacagtaaccctggcttggcatgcttggctctgcaatatataaaagcatacggaggtgattgtaaagtagttggagggccagatggaaagaaacctgctgaatctgaattcgcccaagaatttgcccccaactgtggtgtgcaggcatcatcgcttgctcaaataactggaagatttctcgcatgtcaatctaagtatgcggaaccttctgaagcattcaatgatattcttataagaaataccaagagtttggatattctctatagcaagaatcacactgaggttggtgctgctgtgagtggctccggtggtggtggcccctatttctggtgtgtactcttcagtaatggcaaaccaaagagtagcttttccacaggtggagttgagcctaaggtaagtagacctggatgcttcagtggttctaatgaccaatgcagtggtgctaatactttgtctcaaaccatatatctctggacaatcactgtaggagcttccgttgcactgctttatgccttaggagtatgaaccatcangggatttgttttttggcttgattgaacggcctttttttttgttgggaatgacttcaattttttgaattattatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="40053" stop="42746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40352" g_stop="40479" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40480" i_stop="41757" i_length="1278">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41758" g_stop="42446" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="817" r_length="689" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-E711931" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40352" e_stop="40479"/>
          <exon e_start="41758" e_stop="42446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAGCTTCTTCTCTACACCCACCCACCCCACTCCCACCGACATCTTCTGTACAGAAATGGCAATGCTTCAATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAAGTAAGGATTCTTTATTCTTCTTTTTATTTTTTTTCATTTTTGAATGTGTTTTGCTACTTAAACTATCTTACTGTTGGATCTAATTAATGATTGAGTTTCAATTTTTGGTGTATAATTTATTGATTAAACTATAATGTGCTGATTGCTTAGTAATTTCAGCATTGAAAAATTTTGAGTTCATGCTAATAGGATTTCAGTTATAGTATATAAAGTGCATAGTTTCTGAGATTTATAGATCTACTTTTCTAGACTTTGTTTAATGATATTATCTGGTTGCTCCACAGTGATCAATATTAACTAGCAATGTGCAAATTTGAGTTTCCTTGGGAGGTATTCGGAAGGATTTGGAATATGTTATTTGTATAATTGTGAGATTACTAAAGATATATCTTACTAATAGAACATTGGTTTCTATGTGATTCTTGCCTTGTTAAGCTAGCTAATGGTATAGGAACATGTTGCATTTATGGCACTCTGACCAGAAACTATGTAGTCAACCTACAAATTCTGATTTTGTTGGTATGTTGCATTTATAGCACTGACTAGAAACTATTTAGTCAATCTGCAAATTCTGGTTTTGTGAATAGTTAGGGGAAGCTGCTCAAATGGCTTATCGGTCTTTGTAATTTGTGGTATTATGAGAAGATACCCGTAGAGATATAACACCTAGCCACAAAAGCCGTCTCATGTGAAGATGATTGCCTAATTCCATATAAGGAGATCACTAGTCATTCTCCAACTAATGTAGACTCTAATCCATTCCAACAATATGACACCAGGGTGTGACATCCCCAAAATTAGCTCATGAGGGGAGGATTGTCAAAGTACGTATAAGCAAACCATTAGTCTTTCCCTAGCAATTGTGGGACTCTAACCCACTAATGGAAGGACAATGCTCAAGTTGCTTTAATTTATGCCTTCGGATACTATGTGGGTGCCTAATCTTTTATCTTTGTCCTTTGCTTCTTATAACTCTCTTGCTAATATGGTTGTTGTTGATAATCTTTCCATGAGTGTGCTAGAATTATAGTCACATCCTAAATGATTTTTACTCTCCTTCTCTAGCTCTTCTAACATTAGTCAGTCTTAGATAATTGCTTGTACTTCCAATTATCGAAAGCATACTGACATGTGTCTCAAGCCTCTTGGGTTTAGATGTAATGTACGCTTGTCATTCTCAATGTGTATTCCTTCAAGCAGATATCTTCTCGATCTTGATTCACTATTATTGCCTTTATGATCAATCTCTAACACATATATTGGCCTGATAAACTACAGCCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGTAATGGCAAACCAAAGAGTAGCTTTTCCACAGGTGGAGTTGAGCCTAAGGTAAGTAGACCTGGATGCTTCAGTGGTTCTAATGACCAATGCAGTGGTGCTAATACTTTGTCTCAAACCATATATCTCTGGACAATCACTGTAGGAGCTTCCGTTGCACTGCTTTATGCCTTAGGAGTATGAACCATCAGGGGATTTGTTTTTTGGCTTGATTGAACGGCCTTTTTTTTTGTTGGGAATGACTTCAATTTTTTGAATTATTATTTT</genome_strand>
        <mrna_strand>CGCTAGCTTCTTCTCTACACCCACCCACCCCACTCCCACCGACATCTTCTGTACAGAAATGGCAATGCTTCAATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGTAATGGCAAACCAAAGAGTAGCTTTTCCACAGGTGGAGTTGAGCCTAAGGTAAGTAGACCTGGATGCTTCAGTGGTTCTAATGACCAATGCAGTGGTGCTAATACTTTGTCTCAAACCATATATCTCTGGACAATCACTGTAGGAGCTTCCGTTGCACTGCTTTATGCCTTAGGAGTATGAACCATCANGGGATTTGTTTTTTGGCTTGATTGAACGGCCTTTTTTTTTGTTGGGAATGACTTCAATTTTTTGAATTATTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578878" ref_strand="+" ref_description="SGN-E578878 [86000]">
      <seq>cccacctcactcccaccgacatcttcagtacagaaatggcaatgcttcaatggtttcttcttctttgcattttcttcatctcagcttctgcggctaaagttcaaaccaaggtaactgataatcctgctgatgagctgataactgcccttaatagtaacagaactgcaaataaattatcctccttatacagtaaccctggcttggcatgcttggctctgcaatatataaaagcatatggaggtgattgtaaagtagttggagggccagatggaaagaaacctgctgaatctgaattcgctcaagaatttgcccctaactgtggtgtgcaggcgttatcgcttgctcaaataactggaagatttctcgcatgtcaatccaagtatgccgaaccttctgaagcattcaatgatattcttataagaaataccaagagtttggatattctctatagcaagaatcacactgaggttggtgctgctgtgagtggctccggtggtggtggcccctatttctggtgtgtactcttcagcaatggcaaaccaaagagtagcttttccacagggggagtagagcctaaggtaagtagacctggatgcttcagtggttctaatgaccaatgcagtggtgctagttctttgtctcaaaccatatatctctggacaatcactgtaggagcttccgttgcactgctttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="40075" stop="42648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40375" g_stop="40479" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40480" i_stop="41757" i_length="1278">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41758" g_stop="42348" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="696" r_length="591" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-E578878" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40375" e_stop="40479"/>
          <exon e_start="41758" e_stop="42348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCACTCCCACCGACATCTTCTGTACAGAAATGGCAATGCTTCAATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAAGTAAGGATTCTTTATTCTTCTTTTTATTTTTTTTCATTTTTGAATGTGTTTTGCTACTTAAACTATCTTACTGTTGGATCTAATTAATGATTGAGTTTCAATTTTTGGTGTATAATTTATTGATTAAACTATAATGTGCTGATTGCTTAGTAATTTCAGCATTGAAAAATTTTGAGTTCATGCTAATAGGATTTCAGTTATAGTATATAAAGTGCATAGTTTCTGAGATTTATAGATCTACTTTTCTAGACTTTGTTTAATGATATTATCTGGTTGCTCCACAGTGATCAATATTAACTAGCAATGTGCAAATTTGAGTTTCCTTGGGAGGTATTCGGAAGGATTTGGAATATGTTATTTGTATAATTGTGAGATTACTAAAGATATATCTTACTAATAGAACATTGGTTTCTATGTGATTCTTGCCTTGTTAAGCTAGCTAATGGTATAGGAACATGTTGCATTTATGGCACTCTGACCAGAAACTATGTAGTCAACCTACAAATTCTGATTTTGTTGGTATGTTGCATTTATAGCACTGACTAGAAACTATTTAGTCAATCTGCAAATTCTGGTTTTGTGAATAGTTAGGGGAAGCTGCTCAAATGGCTTATCGGTCTTTGTAATTTGTGGTATTATGAGAAGATACCCGTAGAGATATAACACCTAGCCACAAAAGCCGTCTCATGTGAAGATGATTGCCTAATTCCATATAAGGAGATCACTAGTCATTCTCCAACTAATGTAGACTCTAATCCATTCCAACAATATGACACCAGGGTGTGACATCCCCAAAATTAGCTCATGAGGGGAGGATTGTCAAAGTACGTATAAGCAAACCATTAGTCTTTCCCTAGCAATTGTGGGACTCTAACCCACTAATGGAAGGACAATGCTCAAGTTGCTTTAATTTATGCCTTCGGATACTATGTGGGTGCCTAATCTTTTATCTTTGTCCTTTGCTTCTTATAACTCTCTTGCTAATATGGTTGTTGTTGATAATCTTTCCATGAGTGTGCTAGAATTATAGTCACATCCTAAATGATTTTTACTCTCCTTCTCTAGCTCTTCTAACATTAGTCAGTCTTAGATAATTGCTTGTACTTCCAATTATCGAAAGCATACTGACATGTGTCTCAAGCCTCTTGGGTTTAGATGTAATGTACGCTTGTCATTCTCAATGTGTATTCCTTCAAGCAGATATCTTCTCGATCTTGATTCACTATTATTGCCTTTATGATCAATCTCTAACACATATATTGGCCTGATAAACTACAGCCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGTAATGGCAAACCAAAGAGTAGCTTTTCCACAGGTGGAGTTGAGCCTAAGGTAAGTAGACCTGGATGCTTCAGTGGTTCTAATGACCAATGCAGTGGTGCTAATACTTTGTCTCAAACCATATATCTCTGGACAATCACTGTAGGAGCTTCCGTTGCACTGCTTTATG</genome_strand>
        <mrna_strand>CCCACCTCACTCCCACCGACATCTTCAGTACAGAAATGGCAATGCTTCAATGGTTTCTTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCGGCTAAAGTTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGTAACTGATAATCCTGCTGATGAGCTGATAACTGCCCTTAATAGTAACAGAACTGCAAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATATGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCTCAAGAATTTGCCCCTAACTGTGGTGTGCAGGCGTTATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCCAAGTATGCCGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGCAATGGCAAACCAAAGAGTAGCTTTTCCACAGGGGGAGTAGAGCCTAAGGTAAGTAGACCTGGATGCTTCAGTGGTTCTAATGACCAATGCAGTGGTGCTAGTTCTTTGTCTCAAACCATATATCTCTGGACAATCACTGTAGGAGCTTCCGTTGCACTGCTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571615" ref_strand="+" ref_description="SGN-E571615 [15076]">
      <seq>cccacctcactcccaccgacatcttcagtacacgaaatggcaatgcttcaatggtttcttcttctttgcattttcttcatctcagcttctgcggctaaagttcaaaccaaggtaactgataatcctgctgatgagctgataactgcccttaatagtaacagaactgcaaataaattatcctccttatacagtaaccctggcttggcatgcttggctctgcaatatataaaagcatatggaggtgattgtaaagtagttggagggccagatggaaagaaacctgctgaatctgaattcgctcaagaatttgcccctaactgtggtgtgcaggcgttatcgcttgctcaaataactggaagatttctcgcatgtcaatccaagtatgccgaaccttctgaagcattcaatgatattcttataagaaataccaagagtttggatattctctatagcaagaatcacactgaggttggtgctgcttgtgagtggctccggtggtggtggcccttattcctggtgtgtactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="40075" stop="42478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40375" g_stop="40479" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40480" i_stop="41757" i_length="1278">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41758" g_stop="42178" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="528" r_length="422" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-E571615" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40375" e_stop="40479"/>
          <exon e_start="41758" e_stop="42178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCACTCCCACCGACATCTTCTGTACA-GAAATGGCAATGCTTCAATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAAGTAAGGATTCTTTATTCTTCTTTTTATTTTTTTTCATTTTTGAATGTGTTTTGCTACTTAAACTATCTTACTGTTGGATCTAATTAATGATTGAGTTTCAATTTTTGGTGTATAATTTATTGATTAAACTATAATGTGCTGATTGCTTAGTAATTTCAGCATTGAAAAATTTTGAGTTCATGCTAATAGGATTTCAGTTATAGTATATAAAGTGCATAGTTTCTGAGATTTATAGATCTACTTTTCTAGACTTTGTTTAATGATATTATCTGGTTGCTCCACAGTGATCAATATTAACTAGCAATGTGCAAATTTGAGTTTCCTTGGGAGGTATTCGGAAGGATTTGGAATATGTTATTTGTATAATTGTGAGATTACTAAAGATATATCTTACTAATAGAACATTGGTTTCTATGTGATTCTTGCCTTGTTAAGCTAGCTAATGGTATAGGAACATGTTGCATTTATGGCACTCTGACCAGAAACTATGTAGTCAACCTACAAATTCTGATTTTGTTGGTATGTTGCATTTATAGCACTGACTAGAAACTATTTAGTCAATCTGCAAATTCTGGTTTTGTGAATAGTTAGGGGAAGCTGCTCAAATGGCTTATCGGTCTTTGTAATTTGTGGTATTATGAGAAGATACCCGTAGAGATATAACACCTAGCCACAAAAGCCGTCTCATGTGAAGATGATTGCCTAATTCCATATAAGGAGATCACTAGTCATTCTCCAACTAATGTAGACTCTAATCCATTCCAACAATATGACACCAGGGTGTGACATCCCCAAAATTAGCTCATGAGGGGAGGATTGTCAAAGTACGTATAAGCAAACCATTAGTCTTTCCCTAGCAATTGTGGGACTCTAACCCACTAATGGAAGGACAATGCTCAAGTTGCTTTAATTTATGCCTTCGGATACTATGTGGGTGCCTAATCTTTTATCTTTGTCCTTTGCTTCTTATAACTCTCTTGCTAATATGGTTGTTGTTGATAATCTTTCCATGAGTGTGCTAGAATTATAGTCACATCCTAAATGATTTTTACTCTCCTTCTCTAGCTCTTCTAACATTAGTCAGTCTTAGATAATTGCTTGTACTTCCAATTATCGAAAGCATACTGACATGTGTCTCAAGCCTCTTGGGTTTAGATGTAATGTACGCTTGTCATTCTCAATGTGTATTCCTTCAAGCAGATATCTTCTCGATCTTGATTCACTATTATTGCCTTTATGATCAATCTCTAACACATATATTGGCCTGATAAACTACAGCCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGC-TGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTT</genome_strand>
        <mrna_strand>CCCACCTCACTCCCACCGACATCTTCAGTACACGAAATGGCAATGCTTCAATGGTTTCTTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCGGCTAAAGTTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGTAACTGATAATCCTGCTGATGAGCTGATAACTGCCCTTAATAGTAACAGAACTGCAAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATATGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCTCAAGAATTTGCCCCTAACTGTGGTGTGCAGGCGTTATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCCAAGTATGCCGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGCTTGTGAGTGGCTCCGGTGGTGGTGGCCCTTATTCCTGGTGTGTACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687596" ref_strand="+" ref_description="SGN-E687596 [T3_tus_79_A07]">
      <seq>cgtctcccaccgacatcttctgtacagaaatggcaatgcttcaatggtttcctcttctttgcattttcttcatctcagcttctgctgctaaagttcaaaccaaggtaactgataatcctgctgatgagctggtatctgcccttaatagtaacagaactgcgaataaattatcctccttatacagtaaccctggcttggcatgcttggctctgcaatatataaaagcatacggaggtgattgtaaagtagttggagggccagatggaaagaaacctgctgaatctgaattcgcccaagaatttgcccccaactgtggtgtgcaggcatcatcgcttgctcaaataactggaagatttctcgcatgtcaatctaagtatgcggaaccttctgaagcattcaatgatattcttataagaaataccaagagtttggatattctctatagcaagaatcacactgaggttggtgctgctgtgagtggctccggtggtggtggcccctatttctggtgtgtactcttcagtaatggcaaaccaaagagtagcttttccacaggtggagttgagcctaaggtaagtagacctggatgcttcagtggttctaatgaccaatgcagtggtgctaatactttgtctcanaccatatatctctggacaatcactgtaggagcttccgttgcactgctttatgccttaggagtatgaaccatcaggggatttgttttttggcttgattgaacggccttttttttttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="40084" stop="42714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40381" g_stop="40479" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40480" i_stop="41757" i_length="1278">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41758" g_stop="42414" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="757" r_length="658" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-E687596" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40381" e_stop="40479"/>
          <exon e_start="41758" e_stop="42414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCCCACCGACATCTTCTGTACAGAAATGGCAATGCTTCAATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAAGTAAGGATTCTTTATTCTTCTTTTTATTTTTTTTCATTTTTGAATGTGTTTTGCTACTTAAACTATCTTACTGTTGGATCTAATTAATGATTGAGTTTCAATTTTTGGTGTATAATTTATTGATTAAACTATAATGTGCTGATTGCTTAGTAATTTCAGCATTGAAAAATTTTGAGTTCATGCTAATAGGATTTCAGTTATAGTATATAAAGTGCATAGTTTCTGAGATTTATAGATCTACTTTTCTAGACTTTGTTTAATGATATTATCTGGTTGCTCCACAGTGATCAATATTAACTAGCAATGTGCAAATTTGAGTTTCCTTGGGAGGTATTCGGAAGGATTTGGAATATGTTATTTGTATAATTGTGAGATTACTAAAGATATATCTTACTAATAGAACATTGGTTTCTATGTGATTCTTGCCTTGTTAAGCTAGCTAATGGTATAGGAACATGTTGCATTTATGGCACTCTGACCAGAAACTATGTAGTCAACCTACAAATTCTGATTTTGTTGGTATGTTGCATTTATAGCACTGACTAGAAACTATTTAGTCAATCTGCAAATTCTGGTTTTGTGAATAGTTAGGGGAAGCTGCTCAAATGGCTTATCGGTCTTTGTAATTTGTGGTATTATGAGAAGATACCCGTAGAGATATAACACCTAGCCACAAAAGCCGTCTCATGTGAAGATGATTGCCTAATTCCATATAAGGAGATCACTAGTCATTCTCCAACTAATGTAGACTCTAATCCATTCCAACAATATGACACCAGGGTGTGACATCCCCAAAATTAGCTCATGAGGGGAGGATTGTCAAAGTACGTATAAGCAAACCATTAGTCTTTCCCTAGCAATTGTGGGACTCTAACCCACTAATGGAAGGACAATGCTCAAGTTGCTTTAATTTATGCCTTCGGATACTATGTGGGTGCCTAATCTTTTATCTTTGTCCTTTGCTTCTTATAACTCTCTTGCTAATATGGTTGTTGTTGATAATCTTTCCATGAGTGTGCTAGAATTATAGTCACATCCTAAATGATTTTTACTCTCCTTCTCTAGCTCTTCTAACATTAGTCAGTCTTAGATAATTGCTTGTACTTCCAATTATCGAAAGCATACTGACATGTGTCTCAAGCCTCTTGGGTTTAGATGTAATGTACGCTTGTCATTCTCAATGTGTATTCCTTCAAGCAGATATCTTCTCGATCTTGATTCACTATTATTGCCTTTATGATCAATCTCTAACACATATATTGGCCTGATAAACTACAGCCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGTAATGGCAAACCAAAGAGTAGCTTTTCCACAGGTGGAGTTGAGCCTAAGGTAAGTAGACCTGGATGCTTCAGTGGTTCTAATGACCAATGCAGTGGTGCTAATACTTTGTCTCAAACCATATATCTCTGGACAATCACTGTAGGAGCTTCCGTTGCACTGCTTTATGCCTTAGGAGTATGAACCATCAGGGGATTTGTTTTTTGGCTTGATTGAACGGCC-TTTTTTTTTGTTG</genome_strand>
        <mrna_strand>CGTCTCCCACCGACATCTTCTGTACAGAAATGGCAATGCTTCAATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGTAATGGCAAACCAAAGAGTAGCTTTTCCACAGGTGGAGTTGAGCCTAAGGTAAGTAGACCTGGATGCTTCAGTGGTTCTAATGACCAATGCAGTGGTGCTAATACTTTGTCTCANACCATATATCTCTGGACAATCACTGTAGGAGCTTCCGTTGCACTGCTTTATGCCTTAGGAGTATGAACCATCAGGGGATTTGTTTTTTGGCTTGATTGAACGGCCTTTTTTTTTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321765" ref_strand="+" ref_description="SGN-E321765 [cTOB-25-O6]">
      <seq>ctcccaccgacatcttctgtacagaaatggcaatgcttcaatggtttcctcttctttgcattttcttcatctcagcttctgctgctaaagttcaaaccaaggtaactgataatcctgctgatgagctggtatctgcccttaatagtaacagaactgcgaataaattatcctccttatacagtaaccctggcttggcatgcttggctctgcaatatataaaagcatacggaggtgattgtaaagtagttggagggccagatggaaagaaacctgctgaatctgaattcgcccaagaatttgcccccaactgtggtgtgcaggcatcatcgcttgctcaaataactggaagatttctcgcatgtcaatctaagtatgcggaaccttctgaagcattcaatgatattcttataagaaataccaagagtttggatattctctatagcaagatcacactgaggttggtgctgctgtgagtggctccggtggtggtggcccctatttctggtgtgtactcttcagtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="40084" stop="42486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40384" g_stop="40479" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40480" i_stop="41757" i_length="1278">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41758" g_stop="42186" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="524" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-E321765" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40384" e_stop="40479"/>
          <exon e_start="41758" e_stop="42186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCACCGACATCTTCTGTACAGAAATGGCAATGCTTCAATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAAGTAAGGATTCTTTATTCTTCTTTTTATTTTTTTTCATTTTTGAATGTGTTTTGCTACTTAAACTATCTTACTGTTGGATCTAATTAATGATTGAGTTTCAATTTTTGGTGTATAATTTATTGATTAAACTATAATGTGCTGATTGCTTAGTAATTTCAGCATTGAAAAATTTTGAGTTCATGCTAATAGGATTTCAGTTATAGTATATAAAGTGCATAGTTTCTGAGATTTATAGATCTACTTTTCTAGACTTTGTTTAATGATATTATCTGGTTGCTCCACAGTGATCAATATTAACTAGCAATGTGCAAATTTGAGTTTCCTTGGGAGGTATTCGGAAGGATTTGGAATATGTTATTTGTATAATTGTGAGATTACTAAAGATATATCTTACTAATAGAACATTGGTTTCTATGTGATTCTTGCCTTGTTAAGCTAGCTAATGGTATAGGAACATGTTGCATTTATGGCACTCTGACCAGAAACTATGTAGTCAACCTACAAATTCTGATTTTGTTGGTATGTTGCATTTATAGCACTGACTAGAAACTATTTAGTCAATCTGCAAATTCTGGTTTTGTGAATAGTTAGGGGAAGCTGCTCAAATGGCTTATCGGTCTTTGTAATTTGTGGTATTATGAGAAGATACCCGTAGAGATATAACACCTAGCCACAAAAGCCGTCTCATGTGAAGATGATTGCCTAATTCCATATAAGGAGATCACTAGTCATTCTCCAACTAATGTAGACTCTAATCCATTCCAACAATATGACACCAGGGTGTGACATCCCCAAAATTAGCTCATGAGGGGAGGATTGTCAAAGTACGTATAAGCAAACCATTAGTCTTTCCCTAGCAATTGTGGGACTCTAACCCACTAATGGAAGGACAATGCTCAAGTTGCTTTAATTTATGCCTTCGGATACTATGTGGGTGCCTAATCTTTTATCTTTGTCCTTTGCTTCTTATAACTCTCTTGCTAATATGGTTGTTGTTGATAATCTTTCCATGAGTGTGCTAGAATTATAGTCACATCCTAAATGATTTTTACTCTCCTTCTCTAGCTCTTCTAACATTAGTCAGTCTTAGATAATTGCTTGTACTTCCAATTATCGAAAGCATACTGACATGTGTCTCAAGCCTCTTGGGTTTAGATGTAATGTACGCTTGTCATTCTCAATGTGTATTCCTTCAAGCAGATATCTTCTCGATCTTGATTCACTATTATTGCCTTTATGATCAATCTCTAACACATATATTGGCCTGATAAACTACAGCCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGTAATG</genome_strand>
        <mrna_strand>CTCCCACCGACATCTTCTGTACAGAAATGGCAATGCTTCAATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAG-ATCACACTGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476005" ref_strand="+" ref_description="SGN-E476005 [cSTB-43-C11]">
      <seq>aaaggtttcttcttctttgcattttcttcatctcagcatctgctgctaaagttcaaaccaaggtaactgataatcctgctgatgagctggtagctgccgttaatagtaacagaactgcgaataaattatcctccttatacagtaaccctggcttggcatgcttggctctgcaatatataaaagcatacggaggtgattgtaaagtagttggagggccagatggaaagaaacctgctgaatctgaattcgcccaagaatttgcccctaactgtggtgtgcaggcgtcatcgcttgctcaaataactggaagatttctcgcatgtcaatccaagtatgccgaaccttctgaagcattcaatgatattcttataagaaataccaagagtttggatattctctatagcaagaatcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="40123" stop="42415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40423" g_stop="40479" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40480" i_stop="41757" i_length="1278">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41758" g_stop="42115" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="415" r_length="358" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-E476005" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40423" e_stop="40479"/>
          <exon e_start="41758" e_stop="42115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAAGTAAGGATTCTTTATTCTTCTTTTTATTTTTTTTCATTTTTGAATGTGTTTTGCTACTTAAACTATCTTACTGTTGGATCTAATTAATGATTGAGTTTCAATTTTTGGTGTATAATTTATTGATTAAACTATAATGTGCTGATTGCTTAGTAATTTCAGCATTGAAAAATTTTGAGTTCATGCTAATAGGATTTCAGTTATAGTATATAAAGTGCATAGTTTCTGAGATTTATAGATCTACTTTTCTAGACTTTGTTTAATGATATTATCTGGTTGCTCCACAGTGATCAATATTAACTAGCAATGTGCAAATTTGAGTTTCCTTGGGAGGTATTCGGAAGGATTTGGAATATGTTATTTGTATAATTGTGAGATTACTAAAGATATATCTTACTAATAGAACATTGGTTTCTATGTGATTCTTGCCTTGTTAAGCTAGCTAATGGTATAGGAACATGTTGCATTTATGGCACTCTGACCAGAAACTATGTAGTCAACCTACAAATTCTGATTTTGTTGGTATGTTGCATTTATAGCACTGACTAGAAACTATTTAGTCAATCTGCAAATTCTGGTTTTGTGAATAGTTAGGGGAAGCTGCTCAAATGGCTTATCGGTCTTTGTAATTTGTGGTATTATGAGAAGATACCCGTAGAGATATAACACCTAGCCACAAAAGCCGTCTCATGTGAAGATGATTGCCTAATTCCATATAAGGAGATCACTAGTCATTCTCCAACTAATGTAGACTCTAATCCATTCCAACAATATGACACCAGGGTGTGACATCCCCAAAATTAGCTCATGAGGGGAGGATTGTCAAAGTACGTATAAGCAAACCATTAGTCTTTCCCTAGCAATTGTGGGACTCTAACCCACTAATGGAAGGACAATGCTCAAGTTGCTTTAATTTATGCCTTCGGATACTATGTGGGTGCCTAATCTTTTATCTTTGTCCTTTGCTTCTTATAACTCTCTTGCTAATATGGTTGTTGTTGATAATCTTTCCATGAGTGTGCTAGAATTATAGTCACATCCTAAATGATTTTTACTCTCCTTCTCTAGCTCTTCTAACATTAGTCAGTCTTAGATAATTGCTTGTACTTCCAATTATCGAAAGCATACTGACATGTGTCTCAAGCCTCTTGGGTTTAGATGTAATGTACGCTTGTCATTCTCAATGTGTATTCCTTCAAGCAGATATCTTCTCGATCTTGATTCACTATTATTGCCTTTATGATCAATCTCTAACACATATATTGGCCTGATAAACTACAGCCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACAC</genome_strand>
        <mrna_strand>AAAGGTTTCTTCTTCTTTGCATTTTCTTCATCTCAGCATCTGCTGCTAAAGTTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGTAACTGATAATCCTGCTGATGAGCTGGTAGCTGCCGTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCTAACTGTGGTGTGCAGGCGTCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCCAAGTATGCCGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618242" ref_strand="+" ref_description="SGN-E618242 [68918]">
      <seq>tgaggttggtgctgctgtgagtggctccggtggtggtggcccctatttctggtgtgtactcttcagcaatggcaaaccaaagagtagcttttccacagggggagtagagcctaaggtaagtagacctggatgcttcagtggttctaatgaccaatgcagtggtgctagttctttgtctcaaaccatatatctctggacaatcactgtaggagcttccgttgcactgctttatgccttaggagtataaaccatcaagggatttgttttttggcttgattgaacggcctttttttctgttggcaatgacttcattttttttgaattattattttgtgagtgttttcgagaacatttccttgttctacttattgtaactacctctgaatataaatctgtatgctgttcaaatgagaatcaaatgcaaagatttacatagttccaggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="41816" stop="42845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42116" g_stop="42536" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="459"/>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-E618242" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42116" e_stop="42536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGTAATGGCAAACCAAAGAGTAGCTTTTCCACAGGTGGAGTTGAGCCTAAGGTAAGTAGACCTGGATGCTTCAGTGGTTCTAATGACCAATGCAGTGGTGCTAATACTTTGTCTCAAACCATATATCTCTGGACAATCACTGTAGGAGCTTCCGTTGCACTGCTTTATGCCTTAGGAGTATGAACCATCAGGGGATTTGTTTTTTGGCTTGATTGAACGGCCTTTTTTTTTGTTGGGAATGACTTCA-ATTTTTTGAATTATTATTTTGTGAGTGTTTTCGAGAACATTTCC---TTCTACTTATTGTAACTACCTCTGAATATAAATCTGTATGTTGTTCAAATGAGAATCAAATGCAAA</genome_strand>
        <mrna_strand>TGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGCAATGGCAAACCAAAGAGTAGCTTTTCCACAGGGGGAGTAGAGCCTAAGGTAAGTAGACCTGGATGCTTCAGTGGTTCTAATGACCAATGCAGTGGTGCTAGTTCTTTGTCTCAAACCATATATCTCTGGACAATCACTGTAGGAGCTTCCGTTGCACTGCTTTATGCCTTAGGAGTATAAACCATCAAGGGATTTGTTTTTTGGCTTGATTGAACGGCCTTTTTTTCTGTTGGCAATGACTTCATTTTTTTTGAATTATTATTTTGTGAGTGTTTTCGAGAACATTTCCTTGTTCTACTTATTGTAACTACCTCTGAATATAAATCTGTATGCTGTTCAAATGAGAATCAAATGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397177" ref_strand="+" ref_description="SGN-E397177 [TUS-45-K11]">
      <seq>tcacagccaataatcctttacagtccaaagtctgaaatcttgggattccattcactgtccagtaaaatgttgctcgtctttagatctctatgtatgatccttaatctggaatcctggtgaagataaagaatccctcttgatattcccattgcaatacgaaatcgattttcccagggaagttgtctcttcctgcattcatctgcagaaacatcagttcgttttgcgttagcagaactatactgatatgataagatgaatttcatacgaaatgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="44014" stop="44868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44294" g_stop="44568" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-E397177" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44294" e_stop="44568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAGCCAATAATCCTAGCCAGTCCAAAGTCTGAAATCTTGGGATTCCATTCACTGTCCAGTAAAATGTTGCTCGTCTTTAGATCTCTATGTATGATCCTTAATCTGGAATCCTGGTGAAGATAAAGAATCCCTCTTGATATTCCCATTGCAATACGAAATCGATTTTCCCAGGGAAGTTGTCTCTTCCTGCATTCATCTGCAGAAACATCAGTTCGTTTTGCGTTAGCAGAACAATACTGATATGATAAGATGAATTTTAGACGAAATGAGTC</genome_strand>
        <mrna_strand>TCACAGCCAATAATCCTTTACAGTCCAAAGTCTGAAATCTTGGGATTCCATTCACTGTCCAGTAAAATGTTGCTCGTCTTTAGATCTCTATGTATGATCCTTAATCTGGAATCCTGGTGAAGATAAAGAATCCCTCTTGATATTCCCATTGCAATACGAAATCGATTTTCCCAGGGAAGTTGTCTCTTCCTGCATTCATCTGCAGAAACATCAGTTCGTTTTGCGTTAGCAGAACTATACTGATATGATAAGATGAATTTCATACGAAATGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293064" ref_strand="+" ref_description="SGN-E293064 [cLET-12-C20]">
      <seq>cacagccaataatcctagccagtccaaagtctgaaatcttgggattccattcactgtccagtaaaatgttgctcgtctttagatctctatgtatgatccttaatctggaatcctggtgaagataaagaatccctcttgatattcccattgcaatacgaaatcgattttcccagggaagttgtctcttcctgcattcatctgcagaaacatcagttcgttttgcgttagcagaacaatactgatatgataagatgaattttagacgaaatgagtcaagagaatcgaaccaaagatgaagaagtccaagctattgtttggcatatattcataaattagcatcctttcttccccttcaagacaacaacctagaagcctaactagatttctatgctgaagtttggaaatcagaacaacttcattcttcaactcctcaaaaccttgtccggaatgtttggagagcttctttactgctatttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="43995" stop="45073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44295" g_stop="44773" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-E293064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44295" e_stop="44773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCCAATAATCCTAGCCAGTCCAAAGTCTGAAATCTTGGGATTCCATTCACTGTCCAGTAAAATGTTGCTCGTCTTTAGATCTCTATGTATGATCCTTAATCTGGAATCCTGGTGAAGATAAAGAATCCCTCTTGATATTCCCATTGCAATACGAAATCGATTTTCCCAGGGAAGTTGTCTCTTCCTGCATTCATCTGCAGAAACATCAGTTCGTTTTGCGTTAGCAGAACAATACTGATATGATAAGATGAATTTTAGACGAAATGAGTCAAGAGAATCGAACCAAAGATGAAGAAGTCCAAGCTATTGTTTGGCATATATTCATAAATTAGCATCCTTTCTTCCCCTTCAAGACAACAACCTAGAAGCCTAACTAGATTTCTATGCTGAAGTTTGGAAATCAGAACAACTTCATTCTTCAACTCCTCAAAACCTTGTCCGGAATGTTTGGAGAGCTTCTTTACTGCTATTTCTG</genome_strand>
        <mrna_strand>CACAGCCAATAATCCTAGCCAGTCCAAAGTCTGAAATCTTGGGATTCCATTCACTGTCCAGTAAAATGTTGCTCGTCTTTAGATCTCTATGTATGATCCTTAATCTGGAATCCTGGTGAAGATAAAGAATCCCTCTTGATATTCCCATTGCAATACGAAATCGATTTTCCCAGGGAAGTTGTCTCTTCCTGCATTCATCTGCAGAAACATCAGTTCGTTTTGCGTTAGCAGAACAATACTGATATGATAAGATGAATTTTAGACGAAATGAGTCAAGAGAATCGAACCAAAGATGAAGAAGTCCAAGCTATTGTTTGGCATATATTCATAAATTAGCATCCTTTCTTCCCCTTCAAGACAACAACCTAGAAGCCTAACTAGATTTCTATGCTGAAGTTTGGAAATCAGAACAACTTCATTCTTCAACTCCTCAAAACCTTGTCCGGAATGTTTGGAGAGCTTCTTTACTGCTATTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469428" ref_strand="+" ref_description="SGN-E469428 [cSTB-11-N15]">
      <seq>cgaggattccaatcttgatgttaaaaatggcgggagtggatgcttactttggtttaatgaacctcgttgatatcagggaatatgctgaacttgatcaagatctctatgtaaggatggctgcatcagaattaggttcaggctatatgggaaacacaagaatatcagtcattgcaattatattaaccagtttcagcaatcatccttgttggttttctattttggtttgctatgcagagaaaccaaagcggaaaaaggagtaggagacggagaaggaaaggaagatatggaattacctttgttcgatgtgatgactgtttctgctgcaactaataatttctcatctgctaatatcattggagagggtggttttggatcagtttatcggggaaaactatcaacaggaccagaaatagcagtaaagaagctctccaaacattccggacaaggttttgaagagttgaagaatgaagttgttctgatttccaaacttcagcatagaaatctagttaggcttctaggctgttgtcttgaaggggaagaaaggatgctaatttatgaatatatgccaaataatagcttggacttcttcatctttgatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="-" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="45866" stop="44280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45571" g_stop="45441" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45440" i_stop="45215" i_length="226">
            <donor d_prob="0.807" d_score="0.98"/>
            <acceptor a_prob="0.423" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45214" g_stop="45095" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="254" r_length="122" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45094" i_stop="45012" i_length="83">
            <donor d_prob="0.815" d_score="0.86"/>
            <acceptor a_prob="0.932" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45011" g_stop="44881" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="385" r_length="131" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44880" i_stop="44793" i_length="88">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44792" g_stop="44582" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="596" r_length="211" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44581" i_stop="44493" i_length="89">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44492" g_stop="44487" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="602" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="-" ref_id="SGN-E469428" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45571" e_stop="45441"/>
          <exon e_start="45214" e_stop="45095"/>
          <exon e_start="45011" e_stop="44881"/>
          <exon e_start="44792" e_stop="44582"/>
          <exon e_start="44492" e_stop="44487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATATTCCAATCTTGATGTTAAAAATGGCGGGAGTGGATGCTTACTGTGGTTTAAAGAA-CTCGTTGATATCAGGGAATACGCTGAACTTGATCAAGATCTCTATGTAAGGATGGCTGCATCAGAATTAGGTAACTCTCCTTATGCTAAGATGAATCATACATTCATACCACAGGGGAATTTTAGTAACTCAGTTGATTGACTATCTGAACTTTCACCTTGTTTTTGAGGGTTCAGTTCCAAATCCCCTTTCCCATTTTCCATTTTTCCTTCCCCTACCCGGCTACCCCCACCCCCATTTCAAAAATAAGAATCATACCGGAAGGTTTTCACAAGTCATAATGAACTTTTTCACAGGTTCAGGCTACATGGGAAACACAAGAATATCAGTCATTGCAATTATATTAA-CAGTTTCAGCAATCATCCTTGTTGGTTTTCTATTTTGGTTTGCTATGCAGAG-AATGAAAGGGGATAGAGGTTAGAAAATTTGTCCGTCACGTTGAAAGTATAGTTATTTCATTCACCTCAATATCTTTACGAAAAGAAGTTCAATTTTACAGGAGTAGGAGAAGGAAAAGGAAAGGGAGATATGGAATTACCTTTGTTTGATGTGATGACTATTTCTGCTGCAACTAATAATTTCTCATCTGATAATATCATCGGAGAGGGTGGTTTTGGATCTGTTTATCGGGTAACTTGAATTTGTATTCTCTCTGTATCTTAGTCAAATATATGAATGATTCTCTTGTGGCTTAGACTTCGCGTGGATTGTGTGACAGGGAAAACTATCAACAGGACCAGAAATAGCAGTAAAGAAGCTCTCCAAACATTCCGGACAAGGTTTTGAGGAGTTGAAGAATGAAGTTGTTCTGATTTCCAAACTTCAGCATAGAAATCTAGTTAGGCTTCTAGGTTGTTGTCTTGAAGGGGAAGAAAGGATGCTAATTTATGAATATATGCCAAACAATAGCTTGGACTTCTTCATCTTTGGTTCGATTCTCTTGACTCATTTCGTCTAAAATTCATCTTATCATATCAGTATTGTTCTGCTAACGCAAAACGAACTGATGTTTCTGCAGATGAAT</genome_strand>
        <mrna_strand>CGAGGATTCCAATCTTGATGTTAAAAATGGCGGGAGTGGATGCTTACTTTGGTTTAATGAACCTCGTTGATATCAGGGAATATGCTGAACTTGATCAAGATCTCTATGTAAGGATGGCTGCATCAGAATTAG..................................................................................................................................................................................................................................GTTCAGGCTATATGGGAAACACAAGAATATCAGTCATTGCAATTATATTAACCAGTTTCAGCAATCATCCTTGTTGGTTTTCTATTTTGGTTTGCTATGCAGAGAAACCAAAGCGGAAAAAG...................................................................................GAGTAGGAGACGGAGAAGGAAAGGAAGATATGGAATTACCTTTGTTCGATGTGATGACTGTTTCTGCTGCAACTAATAATTTCTCATCTGCTAATATCATTGGAGAGGGTGGTTTTGGATCAGTTTATCGG........................................................................................GGAAAACTATCAACAGGACCAGAAATAGCAGTAAAGAAGCTCTCCAAACATTCCGGACAAGGTTTTGAAGAGTTGAAGAATGAAGTTGTTCTGATTTCCAAACTTCAGCATAGAAATCTAGTTAGGCTTCTAGGCTGTTGTCTTGAAGGGGAAGAAAGGATGCTAATTTATGAATATATGCCAAATAATAGCTTGGACTTCTTCATCTTTG.........................................................................................ATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610348" ref_strand="+" ref_description="SGN-E610348 [57506]">
      <seq>ctaggatgctgcgttcaaggagaagagaagatgttggtctacgaatacttgcaaaacaagagccttgatatatatatatttgatgaagaaaggagcgcattacttgattggccaaagcgcttcaacattatcaatggaattgctcgtggactgatgtacctccatcaagattcgaggctcagaatcatccacagagacttgaaagctagcaatgtcttacttgatactgaaatgaacccaaagatatcagattttgggatggctagaagtttcggaggagatgagacaggagccaatacacgtcgtgttgttggaacatatggttacatgtccccggaatatgcagtcgatgggatattctcagtgaagtcagatgtctttagctttggagtattagtactagagattgtgagcggaaagaagaacagacgatttgttcatccagaccaccnactcaaccttcttggacatacatatatgctacataaagaaggaagatcattggagctagttgatccaaaactggtggactcgtgtaatatatcagaagtactaagatcaatccatgtaggtttagtcatgtgttcaacaaaatccagaggacaggccaaggtatgtcaaactgtgatcatgatgctgaggcaatgaaaagcattttggccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="54657" stop="56308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54957" g_stop="55038" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55039" i_stop="55155" i_length="117">
            <donor d_prob="0.885" d_score="0.96"/>
            <acceptor a_prob="0.871" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55156" g_stop="55393" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="320" r_length="238" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55394" i_stop="55547" i_length="154">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55548" g_stop="55698" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="471" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55699" i_stop="55842" i_length="144">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55843" g_stop="56029" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="664" r_length="193" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-E610348" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54957" e_stop="55038"/>
          <exon e_start="55156" e_stop="55393"/>
          <exon e_start="55548" e_stop="55698"/>
          <exon e_start="55843" e_stop="56029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGATGCTGCGTTCAAGGAGAAGAAAAGATGTTGGTCTACGAATACTTGCGGAACAAGAGCCTTGATATATATATATTTGGTTAGTCTTTCACATCCATTGTGTAGCCATTTCTTTCAAGTGAACTTCTGAGTGTGATTTCTCTGAGCTTCGTTTCATGTTTAGGAGAAATTATAATAAGTTGAAAACATTTGGCAGATGAAGAAAGGAGTACATTACTTGATTGGCCAAAGCGCTTTAACATTATCAATGGAATTGCTCGTGGACTGATGTACCTGCATCAAGATTCGAGGCTCAGAATCATCCACAGAGACTTGAAAGCTAGCAATGTCTTACTTGATACTGATATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAAGTTTTGGAGGAGATGAGACAGGAGCCAATACACGTCGTGTTGTTGGAACATAGTAAGAATTAATAGTTATGCACATTCACACATTCATAAAAATAGTTTTAACTTGCTTTGTCCCGAGTAAAATCTCCTCTGCCCCATACAAGATTAAACCCACCCCACTCCGCTGCTATCTCTAAATATATAATCCTGTCATTTCTTTATTGCAGTGGTTACATGTCTCCAGAATATGCAGTCGATGGGATATTCTCAGTGAAATCAGATGTCTTTAGCTTTGGAGTATTAGTACTAGAGATTGTGAGCGGAAAGAAGAACAGACGATTCGTTCATCCAGACCACCACCTCAACCTTCTTGGACATGTAAGTACCGTGTCCTAACTCATATGTGTAAAAGGGCATTACTCAAAGTATCTGTTAATGAGTTCAAGAGTAGTATGTAAACTATTGATGCTGTCAATGCATATAACTTAAATCGTTTGTTAACTGATGGATCATTATATGCAGACATATATGCTACATAAAGAAGGAAGATCGTTAGAACTTGTCGATCCAAAACTGGTGGACTCATGTAATATATCAGAAGTACAAAGATCAATCCATGTAGGTTTA-TTATGTGTTCAACAAAATCCAGTGGACAGGCCAA-GTATGTC-AACTGTGATTATGATGCTGA-CCAATG-AAGGCATTTT-GCCAT</genome_strand>
        <mrna_strand>CTAGGATGCTGCGTTCAAGGAGAAGAGAAGATGTTGGTCTACGAATACTTGCAAAACAAGAGCCTTGATATATATATATTTG.....................................................................................................................ATGAAGAAAGGAGCGCATTACTTGATTGGCCAAAGCGCTTCAACATTATCAATGGAATTGCTCGTGGACTGATGTACCTCCATCAAGATTCGAGGCTCAGAATCATCCACAGAGACTTGAAAGCTAGCAATGTCTTACTTGATACTGAAATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAAGTTTCGGAGGAGATGAGACAGGAGCCAATACACGTCGTGTTGTTGGAACATA..........................................................................................................................................................TGGTTACATGTCCCCGGAATATGCAGTCGATGGGATATTCTCAGTGAAGTCAGATGTCTTTAGCTTTGGAGTATTAGTACTAGAGATTGTGAGCGGAAAGAAGAACAGACGATTTGTTCATCCAGACCACCNACTCAACCTTCTTGGACAT................................................................................................................................................ACATATATGCTACATAAAGAAGGAAGATCATTGGAGCTAGTTGATCCAAAACTGGTGGACTCGTGTAATATATCAGAAGTACTAAGATCAATCCATGTAGGTTTAGTCATGTGTTCAACAAAATCCAGAGGACAGGCCAAGGTATGTCAAACTGTGATCATGATGCTGAGGCAATGAAAAGCATTTTGGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243045" ref_strand="+" ref_description="SGN-E243045 [cLEF-1-P21]">
      <seq>gttggtctacgaatacttgcggaacaagagccttgatatatatatatttgatgaagaaaggagtacattacttgattggccaaagcgctttaacattatcaatggaattgctcgtggactgatgtacctgcatcaagattcgaggctcagaatcatccacagagacttgaaagctagcaatgtcttacttgatactgatatgaacccaaagatatcagattttgggatggctagaagttttggaggagatgagacaggagccaatacacgtcgtgttgttggaacatatggttacatgtctccagaatatgcagtcgatgggatattctcagtgaaatcagatgtctttagctttggagtattagtactagagattgtgagcggaaagaagaacagacgattcgttcattcagaccaccacctcaaccttcttggacatacatatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="54689" stop="56005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54989" g_stop="55038" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55039" i_stop="55155" i_length="117">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55156" g_stop="55393" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="288" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55394" i_stop="55547" i_length="154">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55548" g_stop="55698" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="439" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55699" i_stop="55842" i_length="144">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55843" g_stop="55852" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="449" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-E243045" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54989" e_stop="55038"/>
          <exon e_start="55156" e_stop="55393"/>
          <exon e_start="55548" e_stop="55698"/>
          <exon e_start="55843" e_stop="55852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTCTACGAATACTTGCGGAACAAGAGCCTTGATATATATATATTTGGTTAGTCTTTCACATCCATTGTGTAGCCATTTCTTTCAAGTGAACTTCTGAGTGTGATTTCTCTGAGCTTCGTTTCATGTTTAGGAGAAATTATAATAAGTTGAAAACATTTGGCAGATGAAGAAAGGAGTACATTACTTGATTGGCCAAAGCGCTTTAACATTATCAATGGAATTGCTCGTGGACTGATGTACCTGCATCAAGATTCGAGGCTCAGAATCATCCACAGAGACTTGAAAGCTAGCAATGTCTTACTTGATACTGATATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAAGTTTTGGAGGAGATGAGACAGGAGCCAATACACGTCGTGTTGTTGGAACATAGTAAGAATTAATAGTTATGCACATTCACACATTCATAAAAATAGTTTTAACTTGCTTTGTCCCGAGTAAAATCTCCTCTGCCCCATACAAGATTAAACCCACCCCACTCCGCTGCTATCTCTAAATATATAATCCTGTCATTTCTTTATTGCAGTGGTTACATGTCTCCAGAATATGCAGTCGATGGGATATTCTCAGTGAAATCAGATGTCTTTAGCTTTGGAGTATTAGTACTAGAGATTGTGAGCGGAAAGAAGAACAGACGATTCGTTCATCCAGACCACCACCTCAACCTTCTTGGACATGTAAGTACCGTGTCCTAACTCATATGTGTAAAAGGGCATTACTCAAAGTATCTGTTAATGAGTTCAAGAGTAGTATGTAAACTATTGATGCTGTCAATGCATATAACTTAAATCGTTTGTTAACTGATGGATCATTATATGCAGACATATATGC</genome_strand>
        <mrna_strand>GTTGGTCTACGAATACTTGCGGAACAAGAGCCTTGATATATATATATTTG.....................................................................................................................ATGAAGAAAGGAGTACATTACTTGATTGGCCAAAGCGCTTTAACATTATCAATGGAATTGCTCGTGGACTGATGTACCTGCATCAAGATTCGAGGCTCAGAATCATCCACAGAGACTTGAAAGCTAGCAATGTCTTACTTGATACTGATATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAAGTTTTGGAGGAGATGAGACAGGAGCCAATACACGTCGTGTTGTTGGAACATA..........................................................................................................................................................TGGTTACATGTCTCCAGAATATGCAGTCGATGGGATATTCTCAGTGAAATCAGATGTCTTTAGCTTTGGAGTATTAGTACTAGAGATTGTGAGCGGAAAGAAGAACAGACGATTCGTTCATTCAGACCACCACCTCAACCTTCTTGGACAT................................................................................................................................................ACATATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350692" ref_strand="+" ref_description="SGN-E350692 [cTOS-7-G6]">
      <seq>tggactcatgtaatatatcagaagtacaaagatcaatccatgtaggtttattatgtgttcaacaaaatccagtggacaggccaagtatgtcaactgtgattatgatgctgaccaatgaaggcattttgccatcagctaaacatcctggcttctttactgaaaggaaaattggtgaagttgatcaattttcttggagtacacaaacaccaagttctataaatgaagttaccatcacattgttggatgctcgataagaagaatgtggagtgatttctcagatgatcactcaattaattgttacattctcagaaaatcaccttctttgtttaaacgaacattgaagtgtgattttatgagataacaactattacttaaataaccatcttagaaatcaaccagaagaatgtcatagttggttccatctttcatcatttcttagaattgtattaaaatcatctcctctattctattttatttatttagttagaaaattttgtattgtaacaacatacacagtgtgatcccatttgtattcttttgtagtaatatgtttgtctacattttacgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="55598" stop="56767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55898" g_stop="56468" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-E350692" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55898" e_stop="56468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCATGTAATATATCAGAAGTACAAAGATCAATCCATGTAGGTTTATTATGTGTTCAACAAAATCCAGTGGACAGGCCAAGTATGTCAACTGTGATTATGATGCTGACCAATGAAGGCATTTTGCCATCAGCTAAACATCCTGGCTTCTTTACTGAAAGGAAAATTGGTGAAGTTGATCAATTTTCTTGGAGTACACAAACACCAAGTTCTATAAATGAAGTTACCATCACATTGTTGGATGCTCGATAAGAAGAATGTGGAGTGATTTCTCAGATGATCACTCAATTAATTGTTACATTCTCAGAAAATCACCTTCTTTGTTTAAACGAACATTGAAGTGTGATTTTATGAGATAACAACTATTACTTAAATAACCATCTTAGAAATCAACCAGAAGAATGTCATAGTTGGTTCCATCTTTCATCATTTCTTAGAATTGTATTAAAATCATCTCCTCTATTCTATTTTATTTATTTAGTTAGAAAATTTTGTATTGTAACAACATACACAGTGTGATCCCATTTGTATTCTTTTGTAGTAATATGTTTGTCTACATTTTACGTTAG</genome_strand>
        <mrna_strand>TGGACTCATGTAATATATCAGAAGTACAAAGATCAATCCATGTAGGTTTATTATGTGTTCAACAAAATCCAGTGGACAGGCCAAGTATGTCAACTGTGATTATGATGCTGACCAATGAAGGCATTTTGCCATCAGCTAAACATCCTGGCTTCTTTACTGAAAGGAAAATTGGTGAAGTTGATCAATTTTCTTGGAGTACACAAACACCAAGTTCTATAAATGAAGTTACCATCACATTGTTGGATGCTCGATAAGAAGAATGTGGAGTGATTTCTCAGATGATCACTCAATTAATTGTTACATTCTCAGAAAATCACCTTCTTTGTTTAAACGAACATTGAAGTGTGATTTTATGAGATAACAACTATTACTTAAATAACCATCTTAGAAATCAACCAGAAGAATGTCATAGTTGGTTCCATCTTTCATCATTTCTTAGAATTGTATTAAAATCATCTCCTCTATTCTATTTTATTTATTTAGTTAGAAAATTTTGTATTGTAACAACATACACAGTGTGATCCCATTTGTATTCTTTTGTAGTAATATGTTTGTCTACATTTTACGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435015" ref_strand="-" ref_description="SGN-E435015 [STM-60-H22]">
      <seq>aaggacatgaatccaaagatatcagacttcgggatagcaaaaatatgtgaagagaatgacattggagccaagacaaaccgagttgttggaacatatgggtacctctcaccagaatatgcattgcacggaagatactcagtaaaatcagatgtatttagctttggtatcttaatattggaaattgtgagtgggaaaagcaacagaagattctctcatccagatcacaaccttaatttacttggacatgcatggaaactctataaagaaggtaggtcaacagaactacttgatgaatacctaggtgattcttgttcaacaaccgaagtggaacgatcaatctgtgttggtctattatgtgtccaacaaagtccagaagaccgtccaagtatgtcttctgcagttatgatgttaagcaatgaaggtgaattgccacaggctaaacggccaggtttttacatagaaagagatgcagcagataatgaattatatgcacagaatacagtgagtgagacccccatcacaatattagctgcccgataagaaaatatttgtccactcgcttccacaacaagcttgcagtttaaataaccttttctttaattctttgtagaaatgtggtgaaaattttgtgtatggctttgccttattggtgtattaactatgtcaaactgactcacacatatgtaaatatgaaagctttctgattggctgtttcttctcaatacaaggaagaagtaaaccaacaaatcaagttcaagaaaaaagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="-" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="59033" stop="57454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58733" g_stop="58639" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58638" i_stop="58528" i_length="111">
            <donor d_prob="0.321" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58527" g_stop="58377" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="246" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58376" i_stop="58270" i_length="107">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58269" g_stop="57746" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="769" r_length="523" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="-" ref_id="SGN-E435015" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435015" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58733" e_stop="58639"/>
          <exon e_start="58527" e_stop="58377"/>
          <exon e_start="58269" e_stop="57746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGACATGAATCCAAAGATATCAGACTTCGGGATAGCAAAAATATGTGAAGAGAATGACATTGGAGCCAAGACAAATCGAGTTGTGGGAACATAGTAAGAACCTTCAACTGGATAGTTAAGAATTTGAACCTAAGACGAGTTTTGAGATACTAAGCATGTTTTCCAGCATTAGTGATTCTATATTTTGTTTACATTTTTATTTAGTGGATACCTCTCACCGGAATATGCATTGCACGGGAGATACTCAGTAGAATCAGATGTATTTAGCTTTGGTATCTTAATATTGGAAATTGTGAGTGGGAAAAGCAACAGAAGATTCTCTCATCCAGATCACAACCTTAATCTACTTGGACATGTAAGATTTGATTTGTTTTATTTCACTTATCCTTTGGTGTTATGTTATTTCCTAGTAACAAATATCTGCAAATCAAGTCAAATGCTGATAGATCTTGTAATCTACAGGCATGGAAACTATATAAAGAAGGTAGGTCAACAGAACTACTTGATGAATACCTAGGTGATTCTTGTTCAACATCCGAAGTGGAACGATCAATCTGTGTTGGTCTATTATGTGTCCAACAAAGTCCAGAAGACCGTCCAAGTATGTCCTCTGCAGTTATGATGTTAAACAATGAAGGTGAATTGCCACAGGCTAAAAGGCCAGGTTTTTACATTGAAAGAGATGCACCATATGGTGAATTATATGCACAGAATACAGCGAGTGAGA-CCCCATCACAATATTAGCTCCTCGATAAGAAGTTATTTGTCCACTCGCTTCCACAACAAGCTTGCAGTTTTTAATAACCTTTTCTTTAATTCTTTGTAGAAATGAGGTGGAAAATTTTGTGTATGGCTTTCCCTTA-TGGTGTATTAACTAGGTCAAACTGACTCAAACATATGTAAATATGAAATCTTACTGATTTCCTGTTGCTTCTCAATACAAGGAAGAGGTTAGCCAACAAATCAAGTTCAAGAACATTAGCGTC</genome_strand>
        <mrna_strand>AAGGACATGAATCCAAAGATATCAGACTTCGGGATAGCAAAAATATGTGAAGAGAATGACATTGGAGCCAAGACAAACCGAGTTGTTGGAACATA...............................................................................................................TGGGTACCTCTCACCAGAATATGCATTGCACGGAAGATACTCAGTAAAATCAGATGTATTTAGCTTTGGTATCTTAATATTGGAAATTGTGAGTGGGAAAAGCAACAGAAGATTCTCTCATCCAGATCACAACCTTAATTTACTTGGACAT...........................................................................................................GCATGGAAACTCTATAAAGAAGGTAGGTCAACAGAACTACTTGATGAATACCTAGGTGATTCTTGTTCAACAACCGAAGTGGAACGATCAATCTGTGTTGGTCTATTATGTGTCCAACAAAGTCCAGAAGACCGTCCAAGTATGTCTTCTGCAGTTATGATGTTAAGCAATGAAGGTGAATTGCCACAGGCTAAACGGCCAGGTTTTTACATAGAAAGAGATGCAGCAGATAATGAATTATATGCACAGAATACAGTGAGTGAGACCCCCATCACAATATTAGCTGCCCGATAAGAAAATATTTGTCCACTCGCTTCCACAACAAGCTTGCAG-TTTAAATAACCTTTTCTTTAATTCTTTGTAGAAATGTGGT-GAAAATTTTGTGTATGGCTTTGCCTTATTGGTGTATTAACTATGTCAAACTGACTCACACATATGTAAATATGAAAGCTTTCTGATTGGCTGTTTCTTCTCAATACAAGGAAGAAGTAAACCAACAAATCAAGTTCAAGAA-AAAAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434438" ref_strand="-" ref_description="SGN-E434438 [STM-59-N18]">
      <seq>atgaatccaaagatatcagacttcgggatagtaaaaatatgtgaagagaatgacattggagccaagacaaaccgagttgttggaacatatgggtacctctcaccagaatatgcattgcacggaagatactcagtaaaatcagatgtatttagctttggtatcttaatattggaaattgtgagtgggaaaagcaacagaagattctctcatccagatcacaaccttaatttacttggacatgcatggaaactctataaagaaggtaggtcaacagaactacttgatgaatacctaggtgattcttgttcaacaaccgaagtggaacgatcaatctgtgttggtctattatgtgtccaacaaagtccagaagaccgtccaagtatgtcttctgcagttatgatgttaagcaatgaaggtgaattgccacaggctaaacggccaggtttttacatagaaagagatgcagcagataatgaattatatgcacagaatacagtgagtgagacccccatcacaatattagctgcccgataagaaaatatttgtccactcgcttccacaacaagcttgcagtttaaataaccttttctttaattctttgtagaaatgtggtgaaaattttgtgtatggctttgccttattggtgtattaactatgtcaaactgactcacacatatgtaaatatgaaagctttctgattggctgtttcttctcaatacaaggaagaagttaaccaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="-" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="59027" stop="57465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58727" g_stop="58639" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58638" i_stop="58528" i_length="111">
            <donor d_prob="0.321" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58527" g_stop="58377" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="240" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58376" i_stop="58270" i_length="107">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58269" g_stop="57757" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="753" r_length="513" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="-" ref_id="SGN-E434438" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434438" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58727" e_stop="58639"/>
          <exon e_start="58527" e_stop="58377"/>
          <exon e_start="58269" e_stop="57757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATCCAAAGATATCAGACTTCGGGATAGCAAAAATATGTGAAGAGAATGACATTGGAGCCAAGACAAATCGAGTTGTGGGAACATAGTAAGAACCTTCAACTGGATAGTTAAGAATTTGAACCTAAGACGAGTTTTGAGATACTAAGCATGTTTTCCAGCATTAGTGATTCTATATTTTGTTTACATTTTTATTTAGTGGATACCTCTCACCGGAATATGCATTGCACGGGAGATACTCAGTAGAATCAGATGTATTTAGCTTTGGTATCTTAATATTGGAAATTGTGAGTGGGAAAAGCAACAGAAGATTCTCTCATCCAGATCACAACCTTAATCTACTTGGACATGTAAGATTTGATTTGTTTTATTTCACTTATCCTTTGGTGTTATGTTATTTCCTAGTAACAAATATCTGCAAATCAAGTCAAATGCTGATAGATCTTGTAATCTACAGGCATGGAAACTATATAAAGAAGGTAGGTCAACAGAACTACTTGATGAATACCTAGGTGATTCTTGTTCAACATCCGAAGTGGAACGATCAATCTGTGTTGGTCTATTATGTGTCCAACAAAGTCCAGAAGACCGTCCAAGTATGTCCTCTGCAGTTATGATGTTAAACAATGAAGGTGAATTGCCACAGGCTAAAAGGCCAGGTTTTTACATTGAAAGAGATGCACCATATGGTGAATTATATGCACAGAATACAGCGAGTGAGA-CCCCATCACAATATTAGCTCCTCGATAAGAAGTTATTTGTCCACTCGCTTCCACAACAAGCTTGCAGTTTTTAATAACCTTTTCTTTAATTCTTTGTAGAAATGAGGTGGAAAATTTTGTGTATGGCTTTCCCTTA-TGGTGTATTAACTAGGTCAAACTGACTCAAACATATGTAAATATGAAATCTTACTGATTTCCTGTTGCTTCTCAATACAAGGAAGAGGTTAGCCAACAAATCAAGTTCAAGA</genome_strand>
        <mrna_strand>ATGAATCCAAAGATATCAGACTTCGGGATAGTAAAAATATGTGAAGAGAATGACATTGGAGCCAAGACAAACCGAGTTGTTGGAACATA...............................................................................................................TGGGTACCTCTCACCAGAATATGCATTGCACGGAAGATACTCAGTAAAATCAGATGTATTTAGCTTTGGTATCTTAATATTGGAAATTGTGAGTGGGAAAAGCAACAGAAGATTCTCTCATCCAGATCACAACCTTAATTTACTTGGACAT...........................................................................................................GCATGGAAACTCTATAAAGAAGGTAGGTCAACAGAACTACTTGATGAATACCTAGGTGATTCTTGTTCAACAACCGAAGTGGAACGATCAATCTGTGTTGGTCTATTATGTGTCCAACAAAGTCCAGAAGACCGTCCAAGTATGTCTTCTGCAGTTATGATGTTAAGCAATGAAGGTGAATTGCCACAGGCTAAACGGCCAGGTTTTTACATAGAAAGAGATGCAGCAGATAATGAATTATATGCACAGAATACAGTGAGTGAGACCCCCATCACAATATTAGCTGCCCGATAAGAAAATATTTGTCCACTCGCTTCCACAACAAGCTTGCAG-TTTAAATAACCTTTTCTTTAATTCTTTGTAGAAATGTGGT-GAAAATTTTGTGTATGGCTTTGCCTTATTGGTGTATTAACTATGTCAAACTGACTCACACATATGTAAATATGAAAGCTTTCTGATTGGCTGTTTCTTCTCAATACAAGGAAGAAGTTAACCACCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421662" ref_strand="+" ref_description="SGN-E421662 [STM-33-A20]">
      <seq>cttgtcatcatggaagaacgaggaggatccagctcccggtgattatacatatcattgtgatccttctggatatccacaaaacatcctgaagaagggttcagatgttgtgtatcggtctggaccgtggaatggtcttcattttagtggggcaattagctcaagagacagtcctttgtatacatttgggatattctcaagtaagacggaggtgtattttggattttatctcacatcttcggttatcacaaggttgacactaagtcagaatggtgcattacagcgttggatttggggtgaccgtgcacaggattggatcccttacctctcaatacccacagacaactgcgatgtttacaaactctgtggcgcatatggtagctgcaacagtcaaaattctcctgtatgtggatgcttagacaaatttgtgccaaaacataatgaagattggcaaaaggcagattggtcaagtggctgtgttaggaggattgaactaaactgcctccagggagacatatttttaaagtattcacatatgaaattgccagacacacgaaattcctggtccaatgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="62328" stop="63500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62628" g_stop="63200" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-E421662" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62628" e_stop="63200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTCATCATGGAAGAGCGAGGAAGATCCAGCTCCTGGTGATTATACATATCATTGTGATCCTTCTGGATATCCACAGAACATCCTGAAGAAGGGTTCAGATGTTGTGTATCGGTCTGGACCGTGGAATGGTCTTCATTTTAGTGGGGCAATAAGCTCAAGAGACAGTCCTTTGTATACATTTGGGATATTCTCAAGTAACACAGAGGTGTATTTTGGATTTAATTTCACCTCTTCGGTTATCACAAGGTTGACACTAAATCAGAATGGTGCATTACAGCGTTGGACTTGGGGTGACCGTGGACAGAATTGGATCCCTTACCTCTCAATACCAACAGACAACTGCGACATTTACAAACTGTGTGGCGCATATGGTAGCTGCAACAGTCAAAATTCTCCTGTATGTGGATGCTTAGACAAATTTGTGCCAAAACATAATGAAGATTGGCAAAAGGCAGACTGGTCAAGTGGCTGTGTTAGGAGGATTCAACTAAACTGCCTCCACGGAGACATATTTTTAAAGTATTCGCATATGAAATTGCCAGACACGCAAAATTCCTTGTCCAACTTGAC</genome_strand>
        <mrna_strand>CTTGTCATCATGGAAGAACGAGGAGGATCCAGCTCCCGGTGATTATACATATCATTGTGATCCTTCTGGATATCCACAAAACATCCTGAAGAAGGGTTCAGATGTTGTGTATCGGTCTGGACCGTGGAATGGTCTTCATTTTAGTGGGGCAATTAGCTCAAGAGACAGTCCTTTGTATACATTTGGGATATTCTCAAGTAAGACGGAGGTGTATTTTGGATTTTATCTCACATCTTCGGTTATCACAAGGTTGACACTAAGTCAGAATGGTGCATTACAGCGTTGGATTTGGGGTGACCGTGCACAGGATTGGATCCCTTACCTCTCAATACCCACAGACAACTGCGATGTTTACAAACTCTGTGGCGCATATGGTAGCTGCAACAGTCAAAATTCTCCTGTATGTGGATGCTTAGACAAATTTGTGCCAAAACATAATGAAGATTGGCAAAAGGCAGATTGGTCAAGTGGCTGTGTTAGGAGGATTGAACTAAACTGCCTCCAGGGAGACATATTTTTAAAGTATTCACATATGAAATTGCCAGACACACGAAATTCCTGGTCCAATGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243045" ref_strand="+" ref_description="SGN-E243045 [cLEF-1-P21]">
      <seq>gttggtctacgaatacttgcggaacaagagccttgatatatatatatttgatgaagaaaggagtacattacttgattggccaaagcgctttaacattatcaatggaattgctcgtggactgatgtacctgcatcaagattcgaggctcagaatcatccacagagacttgaaagctagcaatgtcttacttgatactgatatgaacccaaagatatcagattttgggatggctagaagttttggaggagatgagacaggagccaatacacgtcgtgttgttggaacatatggttacatgtctccagaatatgcagtcgatgggatattctcagtgaaatcagatgtctttagctttggagtattagtactagagattgtgagcggaaagaagaacagacgattcgttcattcagaccaccacctcaaccttcttggacatacatatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="-" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="76001" stop="74934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75867" g_stop="75818" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.820"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75817" i_stop="75701" i_length="117">
            <donor d_prob="0.753" d_score="0.82"/>
            <acceptor a_prob="0.483" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75700" g_stop="75463" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="288" r_length="238" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75462" i_stop="75385" i_length="78">
            <donor d_prob="0.936" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75384" g_stop="75234" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="439" r_length="151" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75233" i_stop="75030" i_length="204">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75029" g_stop="75020" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="449" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="-" ref_id="SGN-E243045" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75867" e_stop="75818"/>
          <exon e_start="75700" e_stop="75463"/>
          <exon e_start="75384" e_stop="75234"/>
          <exon e_start="75029" e_stop="75020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTGTATGAGTACTTGCCAAACAAAAGCCTGGAATTATATATATTTGGTTAGTCTTTCACATCTACTGAGTGGCCATTTCTTTCAATGCAATCAATTTTGATTTCACAAAGCTTCGTTTCGTTGTTATAGAAACCTTTAGTAATACGTTGAGAACATTTGACAGATGAAGAAAGGAGAGCATTACTTGATTGGCCTAAGCGCTTCAATATTATCAATGGAATTGCTCGAGGACTGATGTATCTTCATCAAGATTCTAGGCTCAGAATCATCCACAGAGACTTGAAAGCTAGCAACGTCTTACTTGATATTGAAATGAATCCAAAAATATCAGATTTTGGGATGGCTAGAAGTTTCAGGGGAGATGAAACAGGAGCCAATACACGCCGTGTTGTTGGAACATAGTAAGATTTAATATTTGATTATATATGTAGTCATGAACACATGCTGCATTATATAATCCTGTAGTTTCTTTATTGCAGTGGTTACATGTCCCCGGAATATGCAGTCGAGGGGATATTCTCAGTGAAATCAGATGTCTTTAGCTTTGGGGTATTAGTACTAGAGATTGTGAGTGGAAAGAAGAATCGACGATTTGTTCATCCAGACCACCACCTCAATCTTCTTGGACATGTAAGCACAGTAACTCCTAACGGTAAAAAGACTCAGAAAATGTATTTGTTAATGCATTTAAATTTTATGTGTAGACAGTAAATTACATGTAAATCTCTATTATAAGCGCTTATTATCTAACCTACTATCACAAGTTAAACTTCAATGCTAGAGTTAGTGTGTATAAGTTAAATCCTTTGTTAATGGAGAGATCATTTTGTGCAGGCATGGATGC</genome_strand>
        <mrna_strand>GTTGGTCTACGAATACTTGCGGAACAAGAGCCTTGATATATATATATTTG.....................................................................................................................ATGAAGAAAGGAGTACATTACTTGATTGGCCAAAGCGCTTTAACATTATCAATGGAATTGCTCGTGGACTGATGTACCTGCATCAAGATTCGAGGCTCAGAATCATCCACAGAGACTTGAAAGCTAGCAATGTCTTACTTGATACTGATATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAAGTTTTGGAGGAGATGAGACAGGAGCCAATACACGTCGTGTTGTTGGAACATA..............................................................................TGGTTACATGTCTCCAGAATATGCAGTCGATGGGATATTCTCAGTGAAATCAGATGTCTTTAGCTTTGGAGTATTAGTACTAGAGATTGTGAGCGGAAAGAAGAACAGACGATTCGTTCATTCAGACCACCACCTCAACCTTCTTGGACAT............................................................................................................................................................................................................ACATATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282043" ref_strand="+" ref_description="SGN-E282043 [cLES-2-P3]">
      <seq>tgaattgcacaggagatggatttattaagtattctggtgttaaactgcctgatacgcgaaattcttggttcaatgagacaatgacactacatgaatgcagggtagtttgcttgagaaattgttcgtgtacggcttacacaaatctggacatacgcaatggaggaagtgggtgcttgatatggattgacgagttaattgacatcagacagctatctcaatcaggacaggatatctacattaggatgtctgcttcagagataggttctgccggatcaacaagaaagataactgttatacttgcaatagctttgccactattggttgcattgattctgctcgctttaggtttaggcctgattctttgtaaacgtaaaaggagagagaatccggtgcttacaacaacagggatattaggtggtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="-" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="77597" stop="76223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77297" g_stop="77037" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77036" i_stop="76811" i_length="226">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76810" g_stop="76667" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="405" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76666" i_stop="76540" i_length="127">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76539" g_stop="76523" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="422" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="-" ref_id="SGN-E282043" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77297" e_stop="77037"/>
          <exon e_start="76810" e_stop="76667"/>
          <exon e_start="76539" e_stop="76523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGCACAGGAGATGGATTTATTAAGTATTCTGGTGTTAAACTGCCTGATACGCGAAATTCTTGGTTCAATGAGACAATGACACTACATGAATGCAGGGTAGTTTGCTTGAGAAATTGTTCGTGTACGGCTTACACAAATCTGGACATACGCAATGGAGGAAGTGGGTGCTTGATATGGATTGACGAGTTAATTGACATCAGACAGCTATCTCAATCAGGACAGGATATCTACATTAGGATGTCTGCTTCAGAGATAGGTAATATTTAGTATGCAATTTCATAAATCATAGCCATGTTAATTGTACTTCAGTGCCAGAAAGTCAGCTCATCTGAGGAACAAAGGTAATCCAAGTCCACATTGTGGGAATAAGACTTTAAGGACGGTCTTGTTTTCCTCGACATAAATACAACAAATGTAAAAGAAAAAACTTCTAGCATTACTAGAAACAACTATTGATAGAATTTCGATGGGATACGTTGCAGGTTCTGCCGGATCAACAAGAAAGATAACTGTTATACTTGCAATAGCTTTGCCACTATTGGTTGCATTGATTCTGCTCGCTTTAGGTTTAGGCCTGATTCTTTGTAAACGTAAAAGGAGAGAGAATCCGGTGCTTACAACAACAGGTAAGTGAAAGTACCAATTATGTCTATTGTAAGACCGGAAGCAACTAGTTATTAGTTTTGTATACCACTAGTATTTCTTTTCAAGCTCCTTATTTGAGCAAGGTCTACTTGTACGTTCAAATTGCAGGGATATTAGGTGGTCAC</genome_strand>
        <mrna_strand>TGAATTGCACAGGAGATGGATTTATTAAGTATTCTGGTGTTAAACTGCCTGATACGCGAAATTCTTGGTTCAATGAGACAATGACACTACATGAATGCAGGGTAGTTTGCTTGAGAAATTGTTCGTGTACGGCTTACACAAATCTGGACATACGCAATGGAGGAAGTGGGTGCTTGATATGGATTGACGAGTTAATTGACATCAGACAGCTATCTCAATCAGGACAGGATATCTACATTAGGATGTCTGCTTCAGAGATAG..................................................................................................................................................................................................................................GTTCTGCCGGATCAACAAGAAAGATAACTGTTATACTTGCAATAGCTTTGCCACTATTGGTTGCATTGATTCTGCTCGCTTTAGGTTTAGGCCTGATTCTTTGTAAACGTAAAAGGAGAGAGAATCCGGTGCTTACAACAACAG...............................................................................................................................GGATATTAGGTGGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="40309" PGL_stop="42536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40309" e_stop="40479"/>
            <exon e_start="41758" e_stop="42536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.962" e_score="0.982"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="40309" e_stop="40479" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.962">
            <gDNA_intron_boundary i_start="40480" i_stop="41757" i_length="1278"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="41758" e_stop="42536" e_length="779"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40309" stop="40479"/>
              <exon start="41758" stop="42527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40352" stop="40479"/>
              <exon start="41758" stop="42446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40375" stop="40479"/>
              <exon start="41758" stop="42348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40375" stop="40479"/>
              <exon start="41758" stop="42178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40381" stop="40479"/>
              <exon start="41758" stop="42414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40384" stop="40479"/>
              <exon start="41758" stop="42186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40423" stop="40479"/>
              <exon start="41758" stop="42115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42116" stop="42536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATCGAAGTAGACGTACAAACAATTTTTTTCCTCTGCTCAACAGCTAGCTTCTTCTCTACACCCACCCACCCCACTCCCACCGACATCTTCTGTACAGAAATGGCAATGCTTCAATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAA : CCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGTAATGGCAAACCAAAGAGTAGCTTTTCCACAGGTGGAGTTGAGCCTAAGGTAAGTAGACCTGGATGCTTCAGTGGTTCTAATGACCAATGCAGTGGTGCTAATACTTTGTCTCAAACCATATATCTCTGGACAATCACTGTAGGAGCTTCCGTTGCACTGCTTTATGCCTTAGGAGTATGAACCATCAGGGGATTTGTTTTTTGGCTTGATTGAACGGCCTTTTTTTTTGTTGGGAATGACTTCAATTTTTTGAATTATTATTTTGTGAGTGTTTTCGAGAACATTTCCTTCTACTTATTGTAACTACCTCTGAATATAAATCTGTATGTTGTTCAAATGAGAATCAAATGCAAA</gDNA_template>
            <first_frame> R  S  K  *  T  Y  K  Q  F  F  S  S  A  Q  Q  L  A  S  S  L  H  P  P  T  P  L  P  P  T  S  S  V  Q  K  W  Q  C  F  N  G  F  L  F  F  A  F  S  S  S  Q  L  L  L  L  K  F  K  :  P  R  *  L  I  I  L  L  M  S  W  Y  L  P  L  I  V  T  E  L  R  I  N  Y  P  P  Y  T  V  T  L  A  W  H  A  W  L  C  N  I  *  K  H  T  E  V  I  V  K  *  L  E  G  Q  M  E  R  N  L  L  N  L  N  S  P  K  N  L  P  P  T  V  V  C  R  H  H  R  L  L  K  *  L  E  D  F  S  H  V  N  L  S  M  R  N  L  L  K  H  S  M  I  F  L  *  E  I  P  R  V  W  I  F  S  I  A  R  I  T  L  R  L  V  L  L  *  V  A  P  V  V  V  A  P  I  S  G  V  Y  S  S  V  M  A  N  Q  R  V  A  F  P  Q  V  E  L  S  L  R  *  V  D  L  D  A  S  V  V  L  M  T  N  A  V  V  L  I  L  C  L  K  P  Y  I  S  G  Q  S  L  *  E  L  P  L  H  C  F  M  P  *  E  Y  E  P  S  G  D  L  F  F  G  L  I  E  R  P  F  F  L  L  G  M  T  S  I  F  *  I  I  I  L  *  V  F  S  R  T  F  P  S  T  Y  C  N  Y  L  *  I  *  I  C  M  L  F  K  *  E  S  N  A   </first_frame>
            <second_frame>  D  R  S  R  R  T  N  N  F  F  P  L  L  N  S  *  L  L  L  Y  T  H  P  P  H  S  H  R  H  L  L  Y  R  N  G  N  A  S  M  V  S  S  S  L  H  F  L  H  L  S  F  C  C  *  S  S  N :   Q  G  N  *  *  S  C  *  *  A  G  I  C  P  *  *  *  Q  N  C  E  *  I  I  L  L  I  Q  *  P  W  L  G  M  L  G  S  A  I  Y  K  S  I  R  R  *  L  *  S  S  W  R  A  R  W  K  E  T  C  *  I  *  I  R  P  R  I  C  P  Q  L  W  C  A  G  I  I  A  C  S  N  N  W  K  I  S  R  M  S  I  *  V  C  G  T  F  *  S  I  Q  *  Y  S  Y  K  K  Y  Q  E  F  G  Y  S  L  *  Q  E  S  H  *  G  W  C  C  C  E  W  L  R  W  W  W  P  L  F  L  V  C  T  L  Q  *  W  Q  T  K  E  *  L  F  H  R  W  S  *  A  *  G  K  *  T  W  M  L  Q  W  F  *  *  P  M  Q  W  C  *  Y  F  V  S  N  H  I  S  L  D  N  H  C  R  S  F  R  C  T  A  L  C  L  R  S  M  N  H  Q  G  I  C  F  L  A  *  L  N  G  L  F  F  C  W  E  *  L  Q  F  F  E  L  L  F  C  E  C  F  R  E  H  F  L  L  L  I  V  T  T  S  E  Y  K  S  V  C  C  S  N  E  N  Q  M  Q  </second_frame>
            <third_frame>   I  E  V  D  V  Q  T  I  F  F  L  C  S  T  A  S  F  F  S  T  P  T  H  P  T  P  T  D  I  F  C  T  E  M  A  M  L  Q  W  F  P  L  L  C  I  F  F  I  S  A  S  A  A  K  V  Q   : T  K  V  T  D  N  P  A  D  E  L  V  S  A  L  N  S  N  R  T  A  N  K  L  S  S  L  Y  S  N  P  G  L  A  C  L  A  L  Q  Y  I  K  A  Y  G  G  D  C  K  V  V  G  G  P  D  G  K  K  P  A  E  S  E  F  A  Q  E  F  A  P  N  C  G  V  Q  A  S  S  L  A  Q  I  T  G  R  F  L  A  C  Q  S  K  Y  A  E  P  S  E  A  F  N  D  I  L  I  R  N  T  K  S  L  D  I  L  Y  S  K  N  H  T  E  V  G  A  A  V  S  G  S  G  G  G  G  P  Y  F  W  C  V  L  F  S  N  G  K  P  K  S  S  F  S  T  G  G  V  E  P  K  V  S  R  P  G  C  F  S  G  S  N  D  Q  C  S  G  A  N  T  L  S  Q  T  I  Y  L  W  T  I  T  V  G  A  S  V  A  L  L  Y  A  L  G  V  *  T  I  R  G  F  V  F  W  L  D  *  T  A  F  F  F  V  G  N  D  F  N  F  L  N  Y  Y  F  V  S  V  F  E  N  I  S  F  Y  L  L  *  L  P  L  N  I  N  L  Y  V  V  Q  M  R  I  K  C  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0121N11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40311" stop="40479"/>
                    <exon start="41758" stop="42362"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEVDVQTIFFLCSTASFFSTPTHPTPTDIFCTEMAMLQWFPLLCIFFISASAAKVQTKVTDNPADELVSALNSNRTANKLSSLYSNPGLACLALQYIKAYGGDCKVVGGPDGKKPAESEFAQEFAPNCGVQASSLAQITGRFLACQSKYAEPSEAFNDILIRNTKSLDILYSKNHTEVGAAVSGSGGGGPYFWCVLFSNGKPKSSFSTGGVEPKVSRPGCFSGSNDQCSGANTLSQTIYLWTITVGASVALLYALGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="44294" PGL_stop="44773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44294" e_stop="44773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44294" e_stop="44773" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44294" stop="44568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44295" stop="44773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACAGCCAATAATCCTAGCCAGTCCAAAGTCTGAAATCTTGGGATTCCATTCACTGTCCAGTAAAATGTTGCTCGTCTTTAGATCTCTATGTATGATCCTTAATCTGGAATCCTGGTGAAGATAAAGAATCCCTCTTGATATTCCCATTGCAATACGAAATCGATTTTCCCAGGGAAGTTGTCTCTTCCTGCATTCATCTGCAGAAACATCAGTTCGTTTTGCGTTAGCAGAACAATACTGATATGATAAGATGAATTTTAGACGAAATGAGTCAAGAGAATCGAACCAAAGATGAAGAAGTCCAAGCTATTGTTTGGCATATATTCATAAATTAGCATCCTTTCTTCCCCTTCAAGACAACAACCTAGAAGCCTAACTAGATTTCTATGCTGAAGTTTGGAAATCAGAACAACTTCATTCTTCAACTCCTCAAAACCTTGTCCGGAATGTTTGGAGAGCTTCTTTACTGCTATTTCTG</gDNA_template>
            <first_frame> S  Q  P  I  I  L  A  S  P  K  S  E  I  L  G  F  H  S  L  S  S  K  M  L  L  V  F  R  S  L  C  M  I  L  N  L  E  S  W  *  R  *  R  I  P  L  D  I  P  I  A  I  R  N  R  F  S  Q  G  S  C  L  F  L  H  S  S  A  E  T  S  V  R  F  A  L  A  E  Q  Y  *  Y  D  K  M  N  F  R  R  N  E  S  R  E  S  N  Q  R  *  R  S  P  S  Y  C  L  A  Y  I  H  K  L  A  S  F  L  P  L  Q  D  N  N  L  E  A  *  L  D  F  Y  A  E  V  W  K  S  E  Q  L  H  S  S  T  P  Q  N  L  V  R  N  V  W  R  A  S  L  L  L  F  L </first_frame>
            <second_frame>  H  S  Q  *  S  *  P  V  Q  S  L  K  S  W  D  S  I  H  C  P  V  K  C  C  S  S  L  D  L  Y  V  *  S  L  I  W  N  P  G  E  D  K  E  S  L  L  I  F  P  L  Q  Y  E  I  D  F  P  R  E  V  V  S  S  C  I  H  L  Q  K  H  Q  F  V  L  R  *  Q  N  N  T  D  M  I  R  *  I  L  D  E  M  S  Q  E  N  R  T  K  D  E  E  V  Q  A  I  V  W  H  I  F  I  N  *  H  P  F  F  P  F  K  T  T  T  *  K  P  N  *  I  S  M  L  K  F  G  N  Q  N  N  F  I  L  Q  L  L  K  T  L  S  G  M  F  G  E  L  L  Y  C  Y  F   </second_frame>
            <third_frame>   T  A  N  N  P  S  Q  S  K  V  *  N  L  G  I  P  F  T  V  Q  *  N  V  A  R  L  *  I  S  M  Y  D  P  *  S  G  I  L  V  K  I  K  N  P  S  *  Y  S  H  C  N  T  K  S  I  F  P  G  K  L  S  L  P  A  F  I  C  R  N  I  S  S  F  C  V  S  R  T  I  L  I  *  *  D  E  F  *  T  K  *  V  K  R  I  E  P  K  M  K  K  S  K  L  L  F  G  I  Y  S  *  I  S  I  L  S  S  P  S  R  Q  Q  P  R  S  L  T  R  F  L  C  *  S  L  E  I  R  T  T  S  F  F  N  S  S  K  P  C  P  E  C  L  E  S  F  F  T  A  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0121N11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="45571" PGL_stop="44487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45571" e_stop="45441"/>
            <exon e_start="45214" e_stop="45095"/>
            <exon e_start="45011" e_stop="44881"/>
            <exon e_start="44792" e_stop="44582"/>
            <exon e_start="44492" e_stop="44487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.807" acc_prob="0.423" e_score="0.931"/>
          <exon-intron don_prob="0.815" acc_prob="0.932" e_score="0.917"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.939"/>
          <exon-intron don_prob="0.945" acc_prob="0.969" e_score="0.986"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="45571" e_stop="45441" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.807" acc_prob="0.423">
            <gDNA_intron_boundary i_start="45440" i_stop="45215" i_length="226"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="45214" e_stop="45095" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.815" acc_prob="0.932">
            <gDNA_intron_boundary i_start="45094" i_stop="45012" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.939">
            <gDNA_exon_boundary e_start="45011" e_stop="44881" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="44880" i_stop="44793" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="44792" e_stop="44582" e_length="211"/>
          </exon>
          <intron i_serial="4" don_prob="0.945" acc_prob="0.969">
            <gDNA_intron_boundary i_start="44581" i_stop="44493" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44492" e_stop="44487" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45571" stop="45441"/>
              <exon start="45214" stop="45095"/>
              <exon start="45011" stop="44881"/>
              <exon start="44792" stop="44582"/>
              <exon start="44492" stop="44487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATATTCCAATCTTGATGTTAAAAATGGCGGGAGTGGATGCTTACTGTGGTTTAAAGAACTCGTTGATATCAGGGAATACGCTGAACTTGATCAAGATCTCTATGTAAGGATGGCTGCATCAGAATTAG : GTTCAGGCTACATGGGAAACACAAGAATATCAGTCATTGCAATTATATTAACAGTTTCAGCAATCATCCTTGTTGGTTTTCTATTTTGGTTTGCTATGCAGAGAATGAAAGGGGATAGAG : GAGTAGGAGAAGGAAAAGGAAAGGGAGATATGGAATTACCTTTGTTTGATGTGATGACTATTTCTGCTGCAACTAATAATTTCTCATCTGATAATATCATCGGAGAGGGTGGTTTTGGATCTGTTTATCGG : GGAAAACTATCAACAGGACCAGAAATAGCAGTAAAGAAGCTCTCCAAACATTCCGGACAAGGTTTTGAGGAGTTGAAGAATGAAGTTGTTCTGATTTCCAAACTTCAGCATAGAAATCTAGTTAGGCTTCTAGGTTGTTGTCTTGAAGGGGAAGAAAGGATGCTAATTTATGAATATATGCCAAACAATAGCTTGGACTTCTTCATCTTTG : ATGAAT</gDNA_template>
            <first_frame> S  I  F  Q  S  *  C  *  K  W  R  E  W  M  L  T  V  V  *  R  T  R  *  Y  Q  G  I  R  *  T  *  S  R  S  L  C  K  D  G  C  I  R  I  R :   F  R  L  H  G  K  H  K  N  I  S  H  C  N  Y  I  N  S  F  S  N  H  P  C  W  F  S  I  L  V  C  Y  A  E  N  E  R  G  *  R :   S  R  R  R  K  R  K  G  R  Y  G  I  T  F  V  *  C  D  D  Y  F  C  C  N  *  *  F  L  I  *  *  Y  H  R  R  G  W  F  W  I  C  L  S   : G  K  T  I  N  R  T  R  N  S  S  K  E  A  L  Q  T  F  R  T  R  F  *  G  V  E  E  *  S  C  S  D  F  Q  T  S  A  *  K  S  S  *  A  S  R  L  L  S  *  R  G  R  K  D  A  N  L  *  I  Y  A  K  Q  *  L  G  L  L  H  L  * :   *   </first_frame>
            <second_frame>  A  Y  S  N  L  D  V  K  N  G  G  S  G  C  L  L  W  F  K  E  L  V  D  I  R  E  Y  A  E  L  D  Q  D  L  Y  V  R  M  A  A  S  E  L   : G  S  G  Y  M  G  N  T  R  I  S  V  I  A  I  I  L  T  V  S  A  I  I  L  V  G  F  L  F  W  F  A  M  Q  R  M  K  G  D  R   : G  V  G  E  G  K  G  K  G  D  M  E  L  P  L  F  D  V  M  T  I  S  A  A  T  N  N  F  S  S  D  N  I  I  G  E  G  G  F  G  S  V  Y  R  :  G  K  L  S  T  G  P  E  I  A  V  K  K  L  S  K  H  S  G  Q  G  F  E  E  L  K  N  E  V  V  L  I  S  K  L  Q  H  R  N  L  V  R  L  L  G  C  C  L  E  G  E  E  R  M  L  I  Y  E  Y  M  P  N  N  S  L  D  F  F  I  F   : D  E  </second_frame>
            <third_frame>   H  I  P  I  L  M  L  K  M  A  G  V  D  A  Y  C  G  L  K  N  S  L  I  S  G  N  T  L  N  L  I  K  I  S  M  *  G  W  L  H  Q  N  *  :  V  Q  A  T  W  E  T  Q  E  Y  Q  S  L  Q  L  Y  *  Q  F  Q  Q  S  S  L  L  V  F  Y  F  G  L  L  C  R  E  *  K  G  I  E  :  E  *  E  K  E  K  E  R  E  I  W  N  Y  L  C  L  M  *  *  L  F  L  L  Q  L  I  I  S  H  L  I  I  S  S  E  R  V  V  L  D  L  F  I  G :   E  N  Y  Q  Q  D  Q  K  *  Q  *  R  S  S  P  N  I  P  D  K  V  L  R  S  *  R  M  K  L  F  *  F  P  N  F  S  I  E  I  *  L  G  F  *  V  V  V  L  K  G  K  K  G  C  *  F  M  N  I  C  Q  T  I  A  W  T  S  S  S  L  :  M  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0121N11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45570" stop="45441"/>
                    <exon start="45214" stop="45095"/>
                    <exon start="45011" stop="44881"/>
                    <exon start="44792" stop="44582"/>
                    <exon start="44492" stop="44488"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYSNLDVKNGGSGCLLWFKELVDIREYAELDQDLYVRMAASELGSGYMGNTRISVIAIILTVSAIILVGFLFWFAMQRMKGDRGVGEGKGKGDMELPLFDVMTISAATNNFSSDNIIGEGGFGSVYRGKLSTGPEIAVKKLSKHSGQGFEELKNEVVLISKLQHRNLVRLLGCCLEGEERMLIYEYMPNNSLDFFIFDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="54957" PGL_stop="56468"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54957" e_stop="55038"/>
            <exon e_start="55156" e_stop="55393"/>
            <exon e_start="55548" e_stop="55698"/>
            <exon e_start="55843" e_stop="56468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.885" acc_prob="0.871" e_score="0.951"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="0.993"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="54957" e_stop="55038" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.885" acc_prob="0.871">
            <gDNA_intron_boundary i_start="55039" i_stop="55155" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55156" e_stop="55393" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="55394" i_stop="55547" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="55548" e_stop="55698" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55699" i_stop="55842" i_length="144"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="55843" e_stop="56468" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54957" stop="55038"/>
              <exon start="55156" stop="55393"/>
              <exon start="55548" stop="55698"/>
              <exon start="55843" stop="56029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54989" stop="55038"/>
              <exon start="55156" stop="55393"/>
              <exon start="55548" stop="55698"/>
              <exon start="55843" stop="55852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55898" stop="56468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGGATGCTGCGTTCAAGGAGAAGAAAAGATGTTGGTCTACGAATACTTGCGGAACAAGAGCCTTGATATATATATATTTG : ATGAAGAAAGGAGTACATTACTTGATTGGCCAAAGCGCTTTAACATTATCAATGGAATTGCTCGTGGACTGATGTACCTGCATCAAGATTCGAGGCTCAGAATCATCCACAGAGACTTGAAAGCTAGCAATGTCTTACTTGATACTGATATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAAGTTTTGGAGGAGATGAGACAGGAGCCAATACACGTCGTGTTGTTGGAACATA : TGGTTACATGTCTCCAGAATATGCAGTCGATGGGATATTCTCAGTGAAATCAGATGTCTTTAGCTTTGGAGTATTAGTACTAGAGATTGTGAGCGGAAAGAAGAACAGACGATTCGTTCATCCAGACCACCACCTCAACCTTCTTGGACAT : ACATATATGCTACATAAAGAAGGAAGATCGTTAGAACTTGTCGATCCAAAACTGGTGGACTCATGTAATATATCAGAAGTACAAAGATCAATCCATGTAGGTTTATTATGTGTTCAACAAAATCCAGTGGACAGGCCAAGTATGTCAACTGTGATTATGATGCTGACCAATGAAGGCATTTTGCCATCAGCTAAACATCCTGGCTTCTTTACTGAAAGGAAAATTGGTGAAGTTGATCAATTTTCTTGGAGTACACAAACACCAAGTTCTATAAATGAAGTTACCATCACATTGTTGGATGCTCGATAAGAAGAATGTGGAGTGATTTCTCAGATGATCACTCAATTAATTGTTACATTCTCAGAAAATCACCTTCTTTGTTTAAACGAACATTGAAGTGTGATTTTATGAGATAACAACTATTACTTAAATAACCATCTTAGAAATCAACCAGAAGAATGTCATAGTTGGTTCCATCTTTCATCATTTCTTAGAATTGTATTAAAATCATCTCCTCTATTCTATTTTATTTATTTAGTTAGAAAATTTTGTATTGTAACAACATACACAGTGTGATCCCATTTGTATTCTTTTGTAGTAATATGTTTGTCTACATTTTACGTTAG</gDNA_template>
            <first_frame> L  G  C  C  V  Q  G  E  E  K  M  L  V  Y  E  Y  L  R  N  K  S  L  D  I  Y  I  F   : D  E  E  R  S  T  L  L  D  W  P  K  R  F  N  I  I  N  G  I  A  R  G  L  M  Y  L  H  Q  D  S  R  L  R  I  I  H  R  D  L  K  A  S  N  V  L  L  D  T  D  M  N  P  K  I  S  D  F  G  M  A  R  S  F  G  G  D  E  T  G  A  N  T  R  R  V  V  G  T  Y :   G  Y  M  S  P  E  Y  A  V  D  G  I  F  S  V  K  S  D  V  F  S  F  G  V  L  V  L  E  I  V  S  G  K  K  N  R  R  F  V  H  P  D  H  H  L  N  L  L  G  H  :  T  Y  M  L  H  K  E  G  R  S  L  E  L  V  D  P  K  L  V  D  S  C  N  I  S  E  V  Q  R  S  I  H  V  G  L  L  C  V  Q  Q  N  P  V  D  R  P  S  M  S  T  V  I  M  M  L  T  N  E  G  I  L  P  S  A  K  H  P  G  F  F  T  E  R  K  I  G  E  V  D  Q  F  S  W  S  T  Q  T  P  S  S  I  N  E  V  T  I  T  L  L  D  A  R  *  E  E  C  G  V  I  S  Q  M  I  T  Q  L  I  V  T  F  S  E  N  H  L  L  C  L  N  E  H  *  S  V  I  L  *  D  N  N  Y  Y  L  N  N  H  L  R  N  Q  P  E  E  C  H  S  W  F  H  L  S  S  F  L  R  I  V  L  K  S  S  P  L  F  Y  F  I  Y  L  V  R  K  F  C  I  V  T  T  Y  T  V  *  S  H  L  Y  S  F  V  V  I  C  L  S  T  F  Y  V   </first_frame>
            <second_frame>  W  D  A  A  F  K  E  K  K  R  C  W  S  T  N  T  C  G  T  R  A  L  I  Y  I  Y  L  :  M  K  K  G  V  H  Y  L  I  G  Q  S  A  L  T  L  S  M  E  L  L  V  D  *  C  T  C  I  K  I  R  G  S  E  S  S  T  E  T  *  K  L  A  M  S  Y  L  I  L  I  *  T  Q  R  Y  Q  I  L  G  W  L  E  V  L  E  E  M  R  Q  E  P  I  H  V  V  L  L  E  H   : M  V  T  C  L  Q  N  M  Q  S  M  G  Y  S  Q  *  N  Q  M  S  L  A  L  E  Y  *  Y  *  R  L  *  A  E  R  R  T  D  D  S  F  I  Q  T  T  T  S  T  F  L  D  I :   H  I  C  Y  I  K  K  E  D  R  *  N  L  S  I  Q  N  W  W  T  H  V  I  Y  Q  K  Y  K  D  Q  S  M  *  V  Y  Y  V  F  N  K  I  Q  W  T  G  Q  V  C  Q  L  *  L  *  C  *  P  M  K  A  F  C  H  Q  L  N  I  L  A  S  L  L  K  G  K  L  V  K  L  I  N  F  L  G  V  H  K  H  Q  V  L  *  M  K  L  P  S  H  C  W  M  L  D  K  K  N  V  E  *  F  L  R  *  S  L  N  *  L  L  H  S  Q  K  I  T  F  F  V  *  T  N  I  E  V  *  F  Y  E  I  T  T  I  T  *  I  T  I  L  E  I  N  Q  K  N  V  I  V  G  S  I  F  H  H  F  L  E  L  Y  *  N  H  L  L  Y  S  I  L  F  I  *  L  E  N  F  V  L  *  Q  H  T  Q  C  D  P  I  C  I  L  L  *  *  Y  V  C  L  H  F  T  L  </second_frame>
            <third_frame>   G  M  L  R  S  R  R  R  K  D  V  G  L  R  I  L  A  E  Q  E  P  *  Y  I  Y  I  * :   *  R  K  E  Y  I  T  *  L  A  K  A  L  *  H  Y  Q  W  N  C  S  W  T  D  V  P  A  S  R  F  E  A  Q  N  H  P  Q  R  L  E  S  *  Q  C  L  T  *  Y  *  Y  E  P  K  D  I  R  F  W  D  G  *  K  F  W  R  R  *  D  R  S  Q  Y  T  S  C  C  W  N  I  :  W  L  H  V  S  R  I  C  S  R  W  D  I  L  S  E  I  R  C  L  *  L  W  S  I  S  T  R  D  C  E  R  K  E  E  Q  T  I  R  S  S  R  P  P  P  Q  P  S  W  T   : Y  I  Y  A  T  *  R  R  K  I  V  R  T  C  R  S  K  T  G  G  L  M  *  Y  I  R  S  T  K  I  N  P  C  R  F  I  M  C  S  T  K  S  S  G  Q  A  K  Y  V  N  C  D  Y  D  A  D  Q  *  R  H  F  A  I  S  *  T  S  W  L  L  Y  *  K  E  N  W  *  S  *  S  I  F  L  E  Y  T  N  T  K  F  Y  K  *  S  Y  H  H  I  V  G  C  S  I  R  R  M  W  S  D  F  S  D  D  H  S  I  N  C  Y  I  L  R  K  S  P  S  L  F  K  R  T  L  K  C  D  F  M  R  *  Q  L  L  L  K  *  P  S  *  K  S  T  R  R  M  S  *  L  V  P  S  F  I  I  S  *  N  C  I  K  I  I  S  S  I  L  F  Y  L  F  S  *  K  I  L  Y  C  N  N  I  H  S  V  I  P  F  V  F  F  C  S  N  M  F  V  Y  I  L  R  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0121N11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54957" stop="55038"/>
                    <exon start="55156" stop="55393"/>
                    <exon start="55548" stop="55698"/>
                    <exon start="55843" stop="56151"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGCCVQGEEKMLVYEYLRNKSLDIYIFDEERSTLLDWPKRFNIINGIARGLMYLHQDSRLRIIHRDLKASNVLLDTDMNPKISDFGMARSFGGDETGANTRRVVGTYGYMSPEYAVDGIFSVKSDVFSFGVLVLEIVSGKKNRRFVHPDHHLNLLGHTYMLHKEGRSLELVDPKLVDSCNISEVQRSIHVGLLCVQQNPVDRPSMSTVIMMLTNEGILPSAKHPGFFTERKIGEVDQFSWSTQTPSSINEVTITLLDAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="58733" PGL_stop="57746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58733" e_stop="58639"/>
            <exon e_start="58527" e_stop="58377"/>
            <exon e_start="58269" e_stop="57746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.321" acc_prob="0.964" e_score="0.979"/>
          <exon-intron don_prob="0.994" acc_prob="0.960" e_score="0.967"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="58733" e_stop="58639" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.321" acc_prob="0.964">
            <gDNA_intron_boundary i_start="58638" i_stop="58528" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="58527" e_stop="58377" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.960">
            <gDNA_intron_boundary i_start="58376" i_stop="58270" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="0.924">
            <gDNA_exon_boundary e_start="58269" e_stop="57746" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58733" stop="58639"/>
              <exon start="58527" stop="58377"/>
              <exon start="58269" stop="57746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435015" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58727" stop="58639"/>
              <exon start="58527" stop="58377"/>
              <exon start="58269" stop="57757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434438" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGACATGAATCCAAAGATATCAGACTTCGGGATAGCAAAAATATGTGAAGAGAATGACATTGGAGCCAAGACAAATCGAGTTGTGGGAACATA : TGGATACCTCTCACCGGAATATGCATTGCACGGGAGATACTCAGTAGAATCAGATGTATTTAGCTTTGGTATCTTAATATTGGAAATTGTGAGTGGGAAAAGCAACAGAAGATTCTCTCATCCAGATCACAACCTTAATCTACTTGGACAT : GCATGGAAACTATATAAAGAAGGTAGGTCAACAGAACTACTTGATGAATACCTAGGTGATTCTTGTTCAACATCCGAAGTGGAACGATCAATCTGTGTTGGTCTATTATGTGTCCAACAAAGTCCAGAAGACCGTCCAAGTATGTCCTCTGCAGTTATGATGTTAAACAATGAAGGTGAATTGCCACAGGCTAAAAGGCCAGGTTTTTACATTGAAAGAGATGCACCATATGGTGAATTATATGCACAGAATACAGCGAGTGAGACCCCATCACAATATTAGCTCCTCGATAAGAAGTTATTTGTCCACTCGCTTCCACAACAAGCTTGCAGTTTTTAATAACCTTTTCTTTAATTCTTTGTAGAAATGAGGTGGAAAATTTTGTGTATGGCTTTCCCTTATGGTGTATTAACTAGGTCAAACTGACTCAAACATATGTAAATATGAAATCTTACTGATTTCCTGTTGCTTCTCAATACAAGGAAGAGGTTAGCCAACAAATCAAGTTCAAGAACATTAGCGTC</gDNA_template>
            <first_frame> K  D  M  N  P  K  I  S  D  F  G  I  A  K  I  C  E  E  N  D  I  G  A  K  T  N  R  V  V  G  T  Y :   G  Y  L  S  P  E  Y  A  L  H  G  R  Y  S  V  E  S  D  V  F  S  F  G  I  L  I  L  E  I  V  S  G  K  S  N  R  R  F  S  H  P  D  H  N  L  N  L  L  G  H  :  A  W  K  L  Y  K  E  G  R  S  T  E  L  L  D  E  Y  L  G  D  S  C  S  T  S  E  V  E  R  S  I  C  V  G  L  L  C  V  Q  Q  S  P  E  D  R  P  S  M  S  S  A  V  M  M  L  N  N  E  G  E  L  P  Q  A  K  R  P  G  F  Y  I  E  R  D  A  P  Y  G  E  L  Y  A  Q  N  T  A  S  E  T  P  S  Q  Y  *  L  L  D  K  K  L  F  V  H  S  L  P  Q  Q  A  C  S  F  *  *  P  F  L  *  F  F  V  E  M  R  W  K  I  L  C  M  A  F  P  Y  G  V  L  T  R  S  N  *  L  K  H  M  *  I  *  N  L  T  D  F  L  L  L  L  N  T  R  K  R  L  A  N  K  S  S  S  R  T  L  A   </first_frame>
            <second_frame>  R  T  *  I  Q  R  Y  Q  T  S  G  *  Q  K  Y  V  K  R  M  T  L  E  P  R  Q  I  E  L  W  E  H   : M  D  T  S  H  R  N  M  H  C  T  G  D  T  Q  *  N  Q  M  Y  L  A  L  V  S  *  Y  W  K  L  *  V  G  K  A  T  E  D  S  L  I  Q  I  T  T  L  I  Y  L  D  M :   H  G  N  Y  I  K  K  V  G  Q  Q  N  Y  L  M  N  T  *  V  I  L  V  Q  H  P  K  W  N  D  Q  S  V  L  V  Y  Y  V  S  N  K  V  Q  K  T  V  Q  V  C  P  L  Q  L  *  C  *  T  M  K  V  N  C  H  R  L  K  G  Q  V  F  T  L  K  E  M  H  H  M  V  N  Y  M  H  R  I  Q  R  V  R  P  H  H  N  I  S  S  S  I  R  S  Y  L  S  T  R  F  H  N  K  L  A  V  F  N  N  L  F  F  N  S  L  *  K  *  G  G  K  F  C  V  W  L  S  L  M  V  Y  *  L  G  Q  T  D  S  N  I  C  K  Y  E  I  L  L  I  S  C  C  F  S  I  Q  G  R  G  *  P  T  N  Q  V  Q  E  H  *  R  </second_frame>
            <third_frame>   G  H  E  S  K  D  I  R  L  R  D  S  K  N  M  *  R  E  *  H  W  S  Q  D  K  S  S  C  G  N  I  :  W  I  P  L  T  G  I  C  I  A  R  E  I  L  S  R  I  R  C  I  *  L  W  Y  L  N  I  G  N  C  E  W  E  K  Q  Q  K  I  L  S  S  R  S  Q  P  *  S  T  W  T   : C  M  E  T  I  *  R  R  *  V  N  R  T  T  *  *  I  P  R  *  F  L  F  N  I  R  S  G  T  I  N  L  C  W  S  I  M  C  P  T  K  S  R  R  P  S  K  Y  V  L  C  S  Y  D  V  K  Q  *  R  *  I  A  T  G  *  K  A  R  F  L  H  *  K  R  C  T  I  W  *  I  I  C  T  E  Y  S  E  *  D  P  I  T  I  L  A  P  R  *  E  V  I  C  P  L  A  S  T  T  S  L  Q  F  L  I  T  F  S  L  I  L  C  R  N  E  V  E  N  F  V  Y  G  F  P  L  W  C  I  N  *  V  K  L  T  Q  T  Y  V  N  M  K  S  Y  *  F  P  V  A  S  Q  Y  K  E  E  V  S  Q  Q  I  K  F  K  N  I  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0121N11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58733" stop="58639"/>
                    <exon start="58527" stop="58377"/>
                    <exon start="58269" stop="57988"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDMNPKISDFGIAKICEENDIGAKTNRVVGTYGYLSPEYALHGRYSVESDVFSFGILILEIVSGKSNRRFSHPDHNLNLLGHAWKLYKEGRSTELLDEYLGDSCSTSEVERSICVGLLCVQQSPEDRPSMSSAVMMLNNEGELPQAKRPGFYIERDAPYGELYAQNTASETPSQY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="62628" PGL_stop="63200"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62628" e_stop="63200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="62628" e_stop="63200" e_length="573"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62628" stop="63200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421662" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGTCATCATGGAAGAGCGAGGAAGATCCAGCTCCTGGTGATTATACATATCATTGTGATCCTTCTGGATATCCACAGAACATCCTGAAGAAGGGTTCAGATGTTGTGTATCGGTCTGGACCGTGGAATGGTCTTCATTTTAGTGGGGCAATAAGCTCAAGAGACAGTCCTTTGTATACATTTGGGATATTCTCAAGTAACACAGAGGTGTATTTTGGATTTAATTTCACCTCTTCGGTTATCACAAGGTTGACACTAAATCAGAATGGTGCATTACAGCGTTGGACTTGGGGTGACCGTGGACAGAATTGGATCCCTTACCTCTCAATACCAACAGACAACTGCGACATTTACAAACTGTGTGGCGCATATGGTAGCTGCAACAGTCAAAATTCTCCTGTATGTGGATGCTTAGACAAATTTGTGCCAAAACATAATGAAGATTGGCAAAAGGCAGACTGGTCAAGTGGCTGTGTTAGGAGGATTCAACTAAACTGCCTCCACGGAGACATATTTTTAAAGTATTCGCATATGAAATTGCCAGACACGCAAAATTCCTTGTCCAACTTGAC</gDNA_template>
            <first_frame> L  V  I  M  E  E  R  G  R  S  S  S  W  *  L  Y  I  S  L  *  S  F  W  I  S  T  E  H  P  E  E  G  F  R  C  C  V  S  V  W  T  V  E  W  S  S  F  *  W  G  N  K  L  K  R  Q  S  F  V  Y  I  W  D  I  L  K  *  H  R  G  V  F  W  I  *  F  H  L  F  G  Y  H  K  V  D  T  K  S  E  W  C  I  T  A  L  D  L  G  *  P  W  T  E  L  D  P  L  P  L  N  T  N  R  Q  L  R  H  L  Q  T  V  W  R  I  W  *  L  Q  Q  S  K  F  S  C  M  W  M  L  R  Q  I  C  A  K  T  *  *  R  L  A  K  G  R  L  V  K  W  L  C  *  E  D  S  T  K  L  P  P  R  R  H  I  F  K  V  F  A  Y  E  I  A  R  H  A  K  F  L  V  Q  L  D </first_frame>
            <second_frame>  L  S  S  W  K  S  E  E  D  P  A  P  G  D  Y  T  Y  H  C  D  P  S  G  Y  P  Q  N  I  L  K  K  G  S  D  V  V  Y  R  S  G  P  W  N  G  L  H  F  S  G  A  I  S  S  R  D  S  P  L  Y  T  F  G  I  F  S  S  N  T  E  V  Y  F  G  F  N  F  T  S  S  V  I  T  R  L  T  L  N  Q  N  G  A  L  Q  R  W  T  W  G  D  R  G  Q  N  W  I  P  Y  L  S  I  P  T  D  N  C  D  I  Y  K  L  C  G  A  Y  G  S  C  N  S  Q  N  S  P  V  C  G  C  L  D  K  F  V  P  K  H  N  E  D  W  Q  K  A  D  W  S  S  G  C  V  R  R  I  Q  L  N  C  L  H  G  D  I  F  L  K  Y  S  H  M  K  L  P  D  T  Q  N  S  L  S  N  L   </second_frame>
            <third_frame>   C  H  H  G  R  A  R  K  I  Q  L  L  V  I  I  H  I  I  V  I  L  L  D  I  H  R  T  S  *  R  R  V  Q  M  L  C  I  G  L  D  R  G  M  V  F  I  L  V  G  Q  *  A  Q  E  T  V  L  C  I  H  L  G  Y  S  Q  V  T  Q  R  C  I  L  D  L  I  S  P  L  R  L  S  Q  G  *  H  *  I  R  M  V  H  Y  S  V  G  L  G  V  T  V  D  R  I  G  S  L  T  S  Q  Y  Q  Q  T  T  A  T  F  T  N  C  V  A  H  M  V  A  A  T  V  K  I  L  L  Y  V  D  A  *  T  N  L  C  Q  N  I  M  K  I  G  K  R  Q  T  G  Q  V  A  V  L  G  G  F  N  *  T  A  S  T  E  T  Y  F  *  S  I  R  I  *  N  C  Q  T  R  K  I  P  C  P  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0121N11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62629" stop="63198"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSWKSEEDPAPGDYTYHCDPSGYPQNILKKGSDVVYRSGPWNGLHFSGAISSRDSPLYTFGIFSSNTEVYFGFNFTSSVITRLTLNQNGALQRWTWGDRGQNWIPYLSIPTDNCDIYKLCGAYGSCNSQNSPVCGCLDKFVPKHNEDWQKADWSSGCVRRIQLNCLHGDIFLKYSHMKLPDTQNSLSNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="75867" PGL_stop="75020"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75867" e_stop="75818"/>
            <exon e_start="75700" e_stop="75463"/>
            <exon e_start="75384" e_stop="75234"/>
            <exon e_start="75029" e_stop="75020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.753" acc_prob="0.483" e_score="0.820"/>
          <exon-intron don_prob="0.936" acc_prob="0.996" e_score="0.920"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="0.934"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.820">
            <gDNA_exon_boundary e_start="75867" e_stop="75818" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.753" acc_prob="0.483">
            <gDNA_intron_boundary i_start="75817" i_stop="75701" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="75700" e_stop="75463" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75462" i_stop="75385" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.934">
            <gDNA_exon_boundary e_start="75384" e_stop="75234" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75233" i_stop="75030" i_length="204"/>
          </intron>
          <exon e_serial="4" e_score="0.700">
            <gDNA_exon_boundary e_start="75029" e_stop="75020" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75867" stop="75818"/>
              <exon start="75700" stop="75463"/>
              <exon start="75384" stop="75234"/>
              <exon start="75029" stop="75020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGGTGTATGAGTACTTGCCAAACAAAAGCCTGGAATTATATATATTTG : ATGAAGAAAGGAGAGCATTACTTGATTGGCCTAAGCGCTTCAATATTATCAATGGAATTGCTCGAGGACTGATGTATCTTCATCAAGATTCTAGGCTCAGAATCATCCACAGAGACTTGAAAGCTAGCAACGTCTTACTTGATATTGAAATGAATCCAAAAATATCAGATTTTGGGATGGCTAGAAGTTTCAGGGGAGATGAAACAGGAGCCAATACACGCCGTGTTGTTGGAACATA : TGGTTACATGTCCCCGGAATATGCAGTCGAGGGGATATTCTCAGTGAAATCAGATGTCTTTAGCTTTGGGGTATTAGTACTAGAGATTGTGAGTGGAAAGAAGAATCGACGATTTGTTCATCCAGACCACCACCTCAATCTTCTTGGACAT : GCATGGATGC</gDNA_template>
            <first_frame> V  G  V  *  V  L  A  K  Q  K  P  G  I  I  Y  I  * :   *  R  K  E  S  I  T  *  L  A  *  A  L  Q  Y  Y  Q  W  N  C  S  R  T  D  V  S  S  S  R  F  *  A  Q  N  H  P  Q  R  L  E  S  *  Q  R  L  T  *  Y  *  N  E  S  K  N  I  R  F  W  D  G  *  K  F  Q  G  R  *  N  R  S  Q  Y  T  P  C  C  W  N  I  :  W  L  H  V  P  G  I  C  S  R  G  D  I  L  S  E  I  R  C  L  *  L  W  G  I  S  T  R  D  C  E  W  K  E  E  S  T  I  C  S  S  R  P  P  P  Q  S  S  W  T   : C  M  D   </first_frame>
            <second_frame>  L  V  Y  E  Y  L  P  N  K  S  L  E  L  Y  I  F   : D  E  E  R  R  A  L  L  D  W  P  K  R  F  N  I  I  N  G  I  A  R  G  L  M  Y  L  H  Q  D  S  R  L  R  I  I  H  R  D  L  K  A  S  N  V  L  L  D  I  E  M  N  P  K  I  S  D  F  G  M  A  R  S  F  R  G  D  E  T  G  A  N  T  R  R  V  V  G  T  Y :   G  Y  M  S  P  E  Y  A  V  E  G  I  F  S  V  K  S  D  V  F  S  F  G  V  L  V  L  E  I  V  S  G  K  K  N  R  R  F  V  H  P  D  H  H  L  N  L  L  G  H  :  A  W  M  </second_frame>
            <third_frame>   W  C  M  S  T  C  Q  T  K  A  W  N  Y  I  Y  L  :  M  K  K  G  E  H  Y  L  I  G  L  S  A  S  I  L  S  M  E  L  L  E  D  *  C  I  F  I  K  I  L  G  S  E  S  S  T  E  T  *  K  L  A  T  S  Y  L  I  L  K  *  I  Q  K  Y  Q  I  L  G  W  L  E  V  S  G  E  M  K  Q  E  P  I  H  A  V  L  L  E  H   : M  V  T  C  P  R  N  M  Q  S  R  G  Y  S  Q  *  N  Q  M  S  L  A  L  G  Y  *  Y  *  R  L  *  V  E  R  R  I  D  D  L  F  I  Q  T  T  T  S  I  F  L  D  M :   H  G  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0121N11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75866" stop="75818"/>
                    <exon start="75700" stop="75463"/>
                    <exon start="75384" stop="75234"/>
                    <exon start="75029" stop="75021"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVYEYLPNKSLELYIFDEERRALLDWPKRFNIINGIARGLMYLHQDSRLRIIHRDLKASNVLLDIEMNPKISDFGMARSFRGDETGANTRRVVGTYGYMSPEYAVEGIFSVKSDVFSFGVLVLEIVSGKKNRRFVHPDHHLNLLGHAWM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="77297" PGL_stop="76523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77297" e_stop="77037"/>
            <exon e_start="76810" e_stop="76667"/>
            <exon e_start="76539" e_stop="76523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77297" e_stop="77037" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.970">
            <gDNA_intron_boundary i_start="77036" i_stop="76811" i_length="226"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76810" e_stop="76667" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.973">
            <gDNA_intron_boundary i_start="76666" i_stop="76540" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76539" e_stop="76523" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77297" stop="77037"/>
              <exon start="76810" stop="76667"/>
              <exon start="76539" stop="76523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282043" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATTGCACAGGAGATGGATTTATTAAGTATTCTGGTGTTAAACTGCCTGATACGCGAAATTCTTGGTTCAATGAGACAATGACACTACATGAATGCAGGGTAGTTTGCTTGAGAAATTGTTCGTGTACGGCTTACACAAATCTGGACATACGCAATGGAGGAAGTGGGTGCTTGATATGGATTGACGAGTTAATTGACATCAGACAGCTATCTCAATCAGGACAGGATATCTACATTAGGATGTCTGCTTCAGAGATAG : GTTCTGCCGGATCAACAAGAAAGATAACTGTTATACTTGCAATAGCTTTGCCACTATTGGTTGCATTGATTCTGCTCGCTTTAGGTTTAGGCCTGATTCTTTGTAAACGTAAAAGGAGAGAGAATCCGGTGCTTACAACAACAG : GGATATTAGGTGGTCAC</gDNA_template>
            <first_frame> *  I  A  Q  E  M  D  L  L  S  I  L  V  L  N  C  L  I  R  E  I  L  G  S  M  R  Q  *  H  Y  M  N  A  G  *  F  A  *  E  I  V  R  V  R  L  T  Q  I  W  T  Y  A  M  E  E  V  G  A  *  Y  G  L  T  S  *  L  T  S  D  S  Y  L  N  Q  D  R  I  S  T  L  G  C  L  L  Q  R  *  :  V  L  P  D  Q  Q  E  R  *  L  L  Y  L  Q  *  L  C  H  Y  W  L  H  *  F  C  S  L  *  V  *  A  *  F  F  V  N  V  K  G  E  R  I  R  C  L  Q  Q  Q  :  G  Y  *  V  V   </first_frame>
            <second_frame>  E  L  H  R  R  W  I  Y  *  V  F  W  C  *  T  A  *  Y  A  K  F  L  V  Q  *  D  N  D  T  T  *  M  Q  G  S  L  L  E  K  L  F  V  Y  G  L  H  K  S  G  H  T  Q  W  R  K  W  V  L  D  M  D  *  R  V  N  *  H  Q  T  A  I  S  I  R  T  G  Y  L  H  *  D  V  C  F  R  D  R :   F  C  R  I  N  K  K  D  N  C  Y  T  C  N  S  F  A  T  I  G  C  I  D  S  A  R  F  R  F  R  P  D  S  L  *  T  *  K  E  R  E  S  G  A  Y  N  N  R :   D  I  R  W  S  </second_frame>
            <third_frame>   N  C  T  G  D  G  F  I  K  Y  S  G  V  K  L  P  D  T  R  N  S  W  F  N  E  T  M  T  L  H  E  C  R  V  V  C  L  R  N  C  S  C  T  A  Y  T  N  L  D  I  R  N  G  G  S  G  C  L  I  W  I  D  E  L  I  D  I  R  Q  L  S  Q  S  G  Q  D  I  Y  I  R  M  S  A  S  E  I   : G  S  A  G  S  T  R  K  I  T  V  I  L  A  I  A  L  P  L  L  V  A  L  I  L  L  A  L  G  L  G  L  I  L  C  K  R  K  R  R  E  N  P  V  L  T  T  T   : G  I  L  G  G  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0121N11.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77295" stop="77037"/>
                    <exon start="76810" stop="76667"/>
                    <exon start="76539" stop="76523"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NCTGDGFIKYSGVKLPDTRNSWFNETMTLHECRVVCLRNCSCTAYTNLDIRNGGSGCLIWIDELIDIRQLSQSGQDIYIRMSASEIGSAGSTRKITVILAIALPLLVALILLALGLGLILCKRKRRENPVLTTTGILGGH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 61 chains have been computed
$ 
$ memory statistics:
$ 41608 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 2189 bytes was the average size of a spliced alignment
$ 14240 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1780 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 71 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-05 23:39:18
-->
