<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-05 23:39:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326199" ref_strand="+" ref_description="SGN-U326199        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | ferredoxin-related, similar to Ferredoxin. (SP:O78510) (Cryptomonas phi) {Guillardia theta} | chr1:413522-414645 REVERSE | Aliases: T6A9.14(evalue: 5e-36, score=148) genbank/nr: gi|51964944|ref|XP_507256.1| PREDICTED P0493A04.32 gene product [Oryza sativa (japonica cultivar-group)] >gi|50946509|ref|XP_482782.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|42408414|dbj|BAD09597.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 4e-54, score=214)">
      <seq>aagtagacgtacaaacaatttttttcctctgctcaacagctagcttcttctctacacccacccaccccactcccaccgacatcttctgtacagaaatggcaatgcttcaatggtttcctcttctttgcattttcttcatctcagcttctgctgctaaagttcaaaccaaggtaactgataatcctgctgatgagctggtatctgcccttaatagtaacagaactgcgaataaattatcctccttatacagtaaccctggcttggcatgcttggctctgcaatatataaaagcatacggaggtgattgtaaagtagttggagggccagatggaaagaaacctgctgaatctgaattcgcccaagaatttgcccccaactgtggtgtgcaggcatcatcgcttgctcaaataactggaagatttctcgcatgtcaatctaagtatgcggaaccttctgaagcattcaatgatattcttataagaaataccaagagtttggatattctctatagcaagaatcacactgaggttggtgctgctgtgagtggctccggtggtggtggcccctatttctggtgtgtactcttcagtaatggcaaaccaaagagtagcttttccacaggtggagttgagcctaaggtaagtagacctggatgcttcagtggttctaatgaccaatgcagtggtgctaatactttgtctcaaaccatatatctctggacaatcactgtaggagcttccgttgcactgctttatgccttaggagtatgaaccatcaggggatttgttttttggcttgattgaacggcctttttttttgttgggaatgacttcaattttttgaattattattttgtgagtgttttcgaaaacatttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="40015" stop="42772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40315" g_stop="40479" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40480" i_stop="41757" i_length="1278">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41758" g_stop="42472" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="880" r_length="715" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-U326199" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40315" e_stop="40479"/>
          <exon e_start="41758" e_stop="42472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGACGTACAAACAATTTTTTTCCTCTGCTCAACAGCTAGCTTCTTCTCTACACCCACCCACCCCACTCCCACCGACATCTTCTGTACAGAAATGGCAATGCTTCAATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAAGTAAGGATTCTTTATTCTTCTTTTTATTTTTTTTCATTTTTGAATGTGTTTTGCTACTTAAACTATCTTACTGTTGGATCTAATTAATGATTGAGTTTCAATTTTTGGTGTATAATTTATTGATTAAACTATAATGTGCTGATTGCTTAGTAATTTCAGCATTGAAAAATTTTGAGTTCATGCTAATAGGATTTCAGTTATAGTATATAAAGTGCATAGTTTCTGAGATTTATAGATCTACTTTTCTAGACTTTGTTTAATGATATTATCTGGTTGCTCCACAGTGATCAATATTAACTAGCAATGTGCAAATTTGAGTTTCCTTGGGAGGTATTCGGAAGGATTTGGAATATGTTATTTGTATAATTGTGAGATTACTAAAGATATATCTTACTAATAGAACATTGGTTTCTATGTGATTCTTGCCTTGTTAAGCTAGCTAATGGTATAGGAACATGTTGCATTTATGGCACTCTGACCAGAAACTATGTAGTCAACCTACAAATTCTGATTTTGTTGGTATGTTGCATTTATAGCACTGACTAGAAACTATTTAGTCAATCTGCAAATTCTGGTTTTGTGAATAGTTAGGGGAAGCTGCTCAAATGGCTTATCGGTCTTTGTAATTTGTGGTATTATGAGAAGATACCCGTAGAGATATAACACCTAGCCACAAAAGCCGTCTCATGTGAAGATGATTGCCTAATTCCATATAAGGAGATCACTAGTCATTCTCCAACTAATGTAGACTCTAATCCATTCCAACAATATGACACCAGGGTGTGACATCCCCAAAATTAGCTCATGAGGGGAGGATTGTCAAAGTACGTATAAGCAAACCATTAGTCTTTCCCTAGCAATTGTGGGACTCTAACCCACTAATGGAAGGACAATGCTCAAGTTGCTTTAATTTATGCCTTCGGATACTATGTGGGTGCCTAATCTTTTATCTTTGTCCTTTGCTTCTTATAACTCTCTTGCTAATATGGTTGTTGTTGATAATCTTTCCATGAGTGTGCTAGAATTATAGTCACATCCTAAATGATTTTTACTCTCCTTCTCTAGCTCTTCTAACATTAGTCAGTCTTAGATAATTGCTTGTACTTCCAATTATCGAAAGCATACTGACATGTGTCTCAAGCCTCTTGGGTTTAGATGTAATGTACGCTTGTCATTCTCAATGTGTATTCCTTCAAGCAGATATCTTCTCGATCTTGATTCACTATTATTGCCTTTATGATCAATCTCTAACACATATATTGGCCTGATAAACTACAGCCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGTAATGGCAAACCAAAGAGTAGCTTTTCCACAGGTGGAGTTGAGCCTAAGGTAAGTAGACCTGGATGCTTCAGTGGTTCTAATGACCAATGCAGTGGTGCTAATACTTTGTCTCAAACCATATATCTCTGGACAATCACTGTAGGAGCTTCCGTTGCACTGCTTTATGCCTTAGGAGTATGAACCATCAGGGGATTTGTTTTTTGGCTTGATTGAACGGCCTTTTTTTTTGTTGGGAATGACTTCAATTTTTTGAATTATTATTTTGTGAGTGTTTTCGAGAACATTTCCTT</genome_strand>
        <mrna_strand>AAGTAGACGTACAAACAATTTTTTTCCTCTGCTCAACAGCTAGCTTCTTCTCTACACCCACCCACCCCACTCCCACCGACATCTTCTGTACAGAAATGGCAATGCTTCAATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGTAATGGCAAACCAAAGAGTAGCTTTTCCACAGGTGGAGTTGAGCCTAAGGTAAGTAGACCTGGATGCTTCAGTGGTTCTAATGACCAATGCAGTGGTGCTAATACTTTGTCTCAAACCATATATCTCTGGACAATCACTGTAGGAGCTTCCGTTGCACTGCTTTATGCCTTAGGAGTATGAACCATCAGGGGATTTGTTTTTTGGCTTGATTGAACGGCCTTTTTTTTTGTTGGGAATGACTTCAATTTTTTGAATTATTATTTTGTGAGTGTTTTCGAAAACATTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331020" ref_strand="+" ref_description="SGN-U331020        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G27300.1 | Symbol: None | S-locus protein kinase, putative, similar to receptor protein kinase (Ipomoea trifida) gi:836954:gb:AAC23542; contains S-locus glycoprotein family domain, Pfam:PF00954 | chr4:13669314-13672354 REVERSE | Aliases: M4I22.110, M4I22_110 (evalue: 3e-46, score=108) genbank/nr: gi|2181190|emb|CAA73134.1| serine/threonine kinase [Brassica oleracea] (evalue: 3e-45, score=109)">
      <seq>tcacagccaataatcctagccagtccaaagtctgaaatcttgggattccattcactgtccagtaaaatgttgctcgtctttagatctctatgtatgatccttaatctggaatcctggtgaagataaagaatccctcttgatattcccattgcaatacgaaatcgattttcccagggaagttgtctcttcctgcattcatctgcagaaacatcagttcgttttgcgttagcagaacaatactgatatgataagatgaattttagacgaaatgagtcaagagaatcgaaccaaagatgaagaagtccaagctattgtttggcatatattcataaattagcatcctttcttccccttcaagacaacaacctagaagcctaactagatttctatgctgaagtttggaaatcagaacaacttcattcttcaactcctcaaaaccttgtccggaatgtttggagagcttctttactgctatttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="43994" stop="45073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44294" g_stop="44773" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-U331020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44294" e_stop="44773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAGCCAATAATCCTAGCCAGTCCAAAGTCTGAAATCTTGGGATTCCATTCACTGTCCAGTAAAATGTTGCTCGTCTTTAGATCTCTATGTATGATCCTTAATCTGGAATCCTGGTGAAGATAAAGAATCCCTCTTGATATTCCCATTGCAATACGAAATCGATTTTCCCAGGGAAGTTGTCTCTTCCTGCATTCATCTGCAGAAACATCAGTTCGTTTTGCGTTAGCAGAACAATACTGATATGATAAGATGAATTTTAGACGAAATGAGTCAAGAGAATCGAACCAAAGATGAAGAAGTCCAAGCTATTGTTTGGCATATATTCATAAATTAGCATCCTTTCTTCCCCTTCAAGACAACAACCTAGAAGCCTAACTAGATTTCTATGCTGAAGTTTGGAAATCAGAACAACTTCATTCTTCAACTCCTCAAAACCTTGTCCGGAATGTTTGGAGAGCTTCTTTACTGCTATTTCTG</genome_strand>
        <mrna_strand>TCACAGCCAATAATCCTAGCCAGTCCAAAGTCTGAAATCTTGGGATTCCATTCACTGTCCAGTAAAATGTTGCTCGTCTTTAGATCTCTATGTATGATCCTTAATCTGGAATCCTGGTGAAGATAAAGAATCCCTCTTGATATTCCCATTGCAATACGAAATCGATTTTCCCAGGGAAGTTGTCTCTTCCTGCATTCATCTGCAGAAACATCAGTTCGTTTTGCGTTAGCAGAACAATACTGATATGATAAGATGAATTTTAGACGAAATGAGTCAAGAGAATCGAACCAAAGATGAAGAAGTCCAAGCTATTGTTTGGCATATATTCATAAATTAGCATCCTTTCTTCCCCTTCAAGACAACAACCTAGAAGCCTAACTAGATTTCTATGCTGAAGTTTGGAAATCAGAACAACTTCATTCTTCAACTCCTCAAAACCTTGTCCGGAATGTTTGGAGAGCTTCTTTACTGCTATTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341051" ref_strand="+" ref_description="SGN-U341051        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G27300.1 | Symbol: None | S-locus protein kinase, putative, similar to receptor protein kinase (Ipomoea trifida) gi:836954:gb:AAC23542; contains S-locus glycoprotein family domain, Pfam:PF00954 | chr4:13669314-13672354 REVERSE | Aliases: M4I22.110, M4I22_110 (evalue: 2e-75, score=252) genbank/nr: gi|16040952|dbj|BAB69683.1| receptor kinase 5 [Brassica rapa](evalue: 2e-71, score=253)">
      <seq>gttggtctacgaatacttgcggaacaagagccttgatatatatatatttgatgaagaaaggagtacattacttgattggccaaagcgctttaacattatcaatggaattgctcgtggactgatgtacctgcatcaagattcgaggctcagaatcatccacagagacttgaaagctagcaatgtcttacttgatactgatatgaacccaaagatatcagattttgggatggctagaagttttggaggagatgagacaggagccaatacacgtcgtgttgttggaacatatggttacatgtctccagaatatgcagtcgatgggatattctcagtgaaatcagatgtctttagctttggagtattagtactagagattgtgagcggaaagaagaacagacgattcgttcattcagaccaccacctcaaccttcttggacatacatatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="54689" stop="56005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54989" g_stop="55038" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55039" i_stop="55155" i_length="117">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55156" g_stop="55393" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="288" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55394" i_stop="55547" i_length="154">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55548" g_stop="55698" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="439" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55699" i_stop="55842" i_length="144">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55843" g_stop="55852" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="449" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-U341051" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54989" e_stop="55038"/>
          <exon e_start="55156" e_stop="55393"/>
          <exon e_start="55548" e_stop="55698"/>
          <exon e_start="55843" e_stop="55852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTCTACGAATACTTGCGGAACAAGAGCCTTGATATATATATATTTGGTTAGTCTTTCACATCCATTGTGTAGCCATTTCTTTCAAGTGAACTTCTGAGTGTGATTTCTCTGAGCTTCGTTTCATGTTTAGGAGAAATTATAATAAGTTGAAAACATTTGGCAGATGAAGAAAGGAGTACATTACTTGATTGGCCAAAGCGCTTTAACATTATCAATGGAATTGCTCGTGGACTGATGTACCTGCATCAAGATTCGAGGCTCAGAATCATCCACAGAGACTTGAAAGCTAGCAATGTCTTACTTGATACTGATATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAAGTTTTGGAGGAGATGAGACAGGAGCCAATACACGTCGTGTTGTTGGAACATAGTAAGAATTAATAGTTATGCACATTCACACATTCATAAAAATAGTTTTAACTTGCTTTGTCCCGAGTAAAATCTCCTCTGCCCCATACAAGATTAAACCCACCCCACTCCGCTGCTATCTCTAAATATATAATCCTGTCATTTCTTTATTGCAGTGGTTACATGTCTCCAGAATATGCAGTCGATGGGATATTCTCAGTGAAATCAGATGTCTTTAGCTTTGGAGTATTAGTACTAGAGATTGTGAGCGGAAAGAAGAACAGACGATTCGTTCATCCAGACCACCACCTCAACCTTCTTGGACATGTAAGTACCGTGTCCTAACTCATATGTGTAAAAGGGCATTACTCAAAGTATCTGTTAATGAGTTCAAGAGTAGTATGTAAACTATTGATGCTGTCAATGCATATAACTTAAATCGTTTGTTAACTGATGGATCATTATATGCAGACATATATGC</genome_strand>
        <mrna_strand>GTTGGTCTACGAATACTTGCGGAACAAGAGCCTTGATATATATATATTTG.....................................................................................................................ATGAAGAAAGGAGTACATTACTTGATTGGCCAAAGCGCTTTAACATTATCAATGGAATTGCTCGTGGACTGATGTACCTGCATCAAGATTCGAGGCTCAGAATCATCCACAGAGACTTGAAAGCTAGCAATGTCTTACTTGATACTGATATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAAGTTTTGGAGGAGATGAGACAGGAGCCAATACACGTCGTGTTGTTGGAACATA..........................................................................................................................................................TGGTTACATGTCTCCAGAATATGCAGTCGATGGGATATTCTCAGTGAAATCAGATGTCTTTAGCTTTGGAGTATTAGTACTAGAGATTGTGAGCGGAAAGAAGAACAGACGATTCGTTCATTCAGACCACCACCTCAACCTTCTTGGACAT................................................................................................................................................ACATATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340379" ref_strand="+" ref_description="SGN-U340379        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G27290.1 | Symbol: None | S-locus protein kinase, putative, similar to S-receptor kinase gi:392557:gb:AAA62232; contains Pfam domains PF00954: S-locus glycoprotein family, PF00069: Protein kinase domain and PF01453: Lectin (probable mannose binding) | chr4:13666287-13669208 FORWARD | Aliases: M4I22.100, M4I22_100 (evalue: 1e-14, score=77.4) genbank/nr: gi|15237045|ref|NP_194459.1| putative receptor like kinase [Arabidopsis thaliana] gi|7428019|pir||T05753 S-receptor kinase (EC 2.7.1.-) M4I22.100 precursor - Arabidopsis thaliana gi|3269290|emb|CAA19723.1| putative receptor like kinase [Arabidopsis thaliana] gi|7269582|emb|CAB79584.1| putative receptor like kinase [Arabidopsis thaliana](evalue: 8e-13, score=77.4)">
      <seq>tggactcatgtaatatatcagaagtacaaagatcaatccatgtaggtttattatgtgttcaacaaaatccagtggacaggccaagtatgtcaactgtgattatgatgctgaccaatgaaggcattttgccatcagctaaacatcctggcttctttactgaaaggaaaattggtgaagttgatcaattttcttggagtacacaaacaccaagttctataaatgaagttaccatcacattgttggatgctcgataagaagaatgtggagtgatttctcagatgatcactcaattaattgttacattctcagaaaatcaccttctttgtttaaacgaacattgaagtgtgattttatgagataacaactattacttaaataaccatcttagaaatcaaccagaagaatgtcatagttggttccatctttcatcatttcttagaattgtattaaaatcatctcctctattctattttatttatttagttagaaaattttgtattgtaacaacatacacagtgtgatcccatttgtattcttttgtagtaatatgtttgtctacattttacgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="+" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="55598" stop="56767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55898" g_stop="56468" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="+" ref_id="SGN-U340379" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55898" e_stop="56468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCATGTAATATATCAGAAGTACAAAGATCAATCCATGTAGGTTTATTATGTGTTCAACAAAATCCAGTGGACAGGCCAAGTATGTCAACTGTGATTATGATGCTGACCAATGAAGGCATTTTGCCATCAGCTAAACATCCTGGCTTCTTTACTGAAAGGAAAATTGGTGAAGTTGATCAATTTTCTTGGAGTACACAAACACCAAGTTCTATAAATGAAGTTACCATCACATTGTTGGATGCTCGATAAGAAGAATGTGGAGTGATTTCTCAGATGATCACTCAATTAATTGTTACATTCTCAGAAAATCACCTTCTTTGTTTAAACGAACATTGAAGTGTGATTTTATGAGATAACAACTATTACTTAAATAACCATCTTAGAAATCAACCAGAAGAATGTCATAGTTGGTTCCATCTTTCATCATTTCTTAGAATTGTATTAAAATCATCTCCTCTATTCTATTTTATTTATTTAGTTAGAAAATTTTGTATTGTAACAACATACACAGTGTGATCCCATTTGTATTCTTTTGTAGTAATATGTTTGTCTACATTTTACGTTAG</genome_strand>
        <mrna_strand>TGGACTCATGTAATATATCAGAAGTACAAAGATCAATCCATGTAGGTTTATTATGTGTTCAACAAAATCCAGTGGACAGGCCAAGTATGTCAACTGTGATTATGATGCTGACCAATGAAGGCATTTTGCCATCAGCTAAACATCCTGGCTTCTTTACTGAAAGGAAAATTGGTGAAGTTGATCAATTTTCTTGGAGTACACAAACACCAAGTTCTATAAATGAAGTTACCATCACATTGTTGGATGCTCGATAAGAAGAATGTGGAGTGATTTCTCAGATGATCACTCAATTAATTGTTACATTCTCAGAAAATCACCTTCTTTGTTTAAACGAACATTGAAGTGTGATTTTATGAGATAACAACTATTACTTAAATAACCATCTTAGAAATCAACCAGAAGAATGTCATAGTTGGTTCCATCTTTCATCATTTCTTAGAATTGTATTAAAATCATCTCCTCTATTCTATTTTATTTATTTAGTTAGAAAATTTTGTATTGTAACAACATACACAGTGTGATCCCATTTGTATTCTTTTGTAGTAATATGTTTGTCTACATTTTACGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341051" ref_strand="+" ref_description="SGN-U341051        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G27300.1 | Symbol: None | S-locus protein kinase, putative, similar to receptor protein kinase (Ipomoea trifida) gi:836954:gb:AAC23542; contains S-locus glycoprotein family domain, Pfam:PF00954 | chr4:13669314-13672354 REVERSE | Aliases: M4I22.110, M4I22_110 (evalue: 2e-75, score=252) genbank/nr: gi|16040952|dbj|BAB69683.1| receptor kinase 5 [Brassica rapa](evalue: 2e-71, score=253)">
      <seq>gttggtctacgaatacttgcggaacaagagccttgatatatatatatttgatgaagaaaggagtacattacttgattggccaaagcgctttaacattatcaatggaattgctcgtggactgatgtacctgcatcaagattcgaggctcagaatcatccacagagacttgaaagctagcaatgtcttacttgatactgatatgaacccaaagatatcagattttgggatggctagaagttttggaggagatgagacaggagccaatacacgtcgtgttgttggaacatatggttacatgtctccagaatatgcagtcgatgggatattctcagtgaaatcagatgtctttagctttggagtattagtactagagattgtgagcggaaagaagaacagacgattcgttcattcagaccaccacctcaaccttcttggacatacatatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="-" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="76001" stop="74934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75867" g_stop="75818" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.820"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75817" i_stop="75701" i_length="117">
            <donor d_prob="0.753" d_score="0.82"/>
            <acceptor a_prob="0.483" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75700" g_stop="75463" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="288" r_length="238" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75462" i_stop="75385" i_length="78">
            <donor d_prob="0.936" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75384" g_stop="75234" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="439" r_length="151" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75233" i_stop="75030" i_length="204">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75029" g_stop="75020" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="449" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="-" ref_id="SGN-U341051" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75867" e_stop="75818"/>
          <exon e_start="75700" e_stop="75463"/>
          <exon e_start="75384" e_stop="75234"/>
          <exon e_start="75029" e_stop="75020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTGTATGAGTACTTGCCAAACAAAAGCCTGGAATTATATATATTTGGTTAGTCTTTCACATCTACTGAGTGGCCATTTCTTTCAATGCAATCAATTTTGATTTCACAAAGCTTCGTTTCGTTGTTATAGAAACCTTTAGTAATACGTTGAGAACATTTGACAGATGAAGAAAGGAGAGCATTACTTGATTGGCCTAAGCGCTTCAATATTATCAATGGAATTGCTCGAGGACTGATGTATCTTCATCAAGATTCTAGGCTCAGAATCATCCACAGAGACTTGAAAGCTAGCAACGTCTTACTTGATATTGAAATGAATCCAAAAATATCAGATTTTGGGATGGCTAGAAGTTTCAGGGGAGATGAAACAGGAGCCAATACACGCCGTGTTGTTGGAACATAGTAAGATTTAATATTTGATTATATATGTAGTCATGAACACATGCTGCATTATATAATCCTGTAGTTTCTTTATTGCAGTGGTTACATGTCCCCGGAATATGCAGTCGAGGGGATATTCTCAGTGAAATCAGATGTCTTTAGCTTTGGGGTATTAGTACTAGAGATTGTGAGTGGAAAGAAGAATCGACGATTTGTTCATCCAGACCACCACCTCAATCTTCTTGGACATGTAAGCACAGTAACTCCTAACGGTAAAAAGACTCAGAAAATGTATTTGTTAATGCATTTAAATTTTATGTGTAGACAGTAAATTACATGTAAATCTCTATTATAAGCGCTTATTATCTAACCTACTATCACAAGTTAAACTTCAATGCTAGAGTTAGTGTGTATAAGTTAAATCCTTTGTTAATGGAGAGATCATTTTGTGCAGGCATGGATGC</genome_strand>
        <mrna_strand>GTTGGTCTACGAATACTTGCGGAACAAGAGCCTTGATATATATATATTTG.....................................................................................................................ATGAAGAAAGGAGTACATTACTTGATTGGCCAAAGCGCTTTAACATTATCAATGGAATTGCTCGTGGACTGATGTACCTGCATCAAGATTCGAGGCTCAGAATCATCCACAGAGACTTGAAAGCTAGCAATGTCTTACTTGATACTGATATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAAGTTTTGGAGGAGATGAGACAGGAGCCAATACACGTCGTGTTGTTGGAACATA..............................................................................TGGTTACATGTCTCCAGAATATGCAGTCGATGGGATATTCTCAGTGAAATCAGATGTCTTTAGCTTTGGAGTATTAGTACTAGAGATTGTGAGCGGAAAGAAGAACAGACGATTCGTTCATTCAGACCACCACCTCAACCTTCTTGGACAT............................................................................................................................................................................................................ACATATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345724" ref_strand="+" ref_description="SGN-U345724        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G27290.1 | Symbol: None | S-locus protein kinase, putative, similar to S-receptor kinase gi:392557:gb:AAA62232; contains Pfam domains PF00954: S-locus glycoprotein family, PF00069: Protein kinase domain and PF01453: Lectin (probable mannose binding) | chr4:13666287-13669208 FORWARD | Aliases: M4I22.100, M4I22_100 (evalue: 1e-27, score=119) genbank/nr: gi|1272349|gb|AAA97903.1| secreted glycoprotein 3(evalue: 3e-31, score=137)">
      <seq>tgaattgcacaggagatggatttattaagtattctggtgttaaactgcctgatacgcgaaattcttggttcaatgagacaatgacactacatgaatgcagggtagtttgcttgagaaattgttcgtgtacggcttacacaaatctggacatacgcaatggaggaagtgggtgcttgatatggattgacgagttaattgacatcagacagctatctcaatcaggacaggatatctacattaggatgtctgcttcagagataggttctgccggatcaacaagaaagataactgttatacttgcaatagctttgccactattggttgcattgattctgctcgctttaggtttaggcctgattctttgtaaacgtaaaaggagagagaatccggtgcttacaacaacagggatattaggtggtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0121N11-7aJFP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0121N11.1" temp_strand="-" temp_description="C07SLe0121N11.1  AC212647.1 htgs_phase:1 submitted_to_sgn_as:gi|158262141|gb|AC212647.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0121N11, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="77597" stop="76223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77297" g_stop="77037" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77036" i_stop="76811" i_length="226">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76810" g_stop="76667" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="405" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76666" i_stop="76540" i_length="127">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76539" g_stop="76523" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="422" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0121N11.1" gen_strand="-" ref_id="SGN-U345724" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0121N11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77297" e_stop="77037"/>
          <exon e_start="76810" e_stop="76667"/>
          <exon e_start="76539" e_stop="76523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGCACAGGAGATGGATTTATTAAGTATTCTGGTGTTAAACTGCCTGATACGCGAAATTCTTGGTTCAATGAGACAATGACACTACATGAATGCAGGGTAGTTTGCTTGAGAAATTGTTCGTGTACGGCTTACACAAATCTGGACATACGCAATGGAGGAAGTGGGTGCTTGATATGGATTGACGAGTTAATTGACATCAGACAGCTATCTCAATCAGGACAGGATATCTACATTAGGATGTCTGCTTCAGAGATAGGTAATATTTAGTATGCAATTTCATAAATCATAGCCATGTTAATTGTACTTCAGTGCCAGAAAGTCAGCTCATCTGAGGAACAAAGGTAATCCAAGTCCACATTGTGGGAATAAGACTTTAAGGACGGTCTTGTTTTCCTCGACATAAATACAACAAATGTAAAAGAAAAAACTTCTAGCATTACTAGAAACAACTATTGATAGAATTTCGATGGGATACGTTGCAGGTTCTGCCGGATCAACAAGAAAGATAACTGTTATACTTGCAATAGCTTTGCCACTATTGGTTGCATTGATTCTGCTCGCTTTAGGTTTAGGCCTGATTCTTTGTAAACGTAAAAGGAGAGAGAATCCGGTGCTTACAACAACAGGTAAGTGAAAGTACCAATTATGTCTATTGTAAGACCGGAAGCAACTAGTTATTAGTTTTGTATACCACTAGTATTTCTTTTCAAGCTCCTTATTTGAGCAAGGTCTACTTGTACGTTCAAATTGCAGGGATATTAGGTGGTCAC</genome_strand>
        <mrna_strand>TGAATTGCACAGGAGATGGATTTATTAAGTATTCTGGTGTTAAACTGCCTGATACGCGAAATTCTTGGTTCAATGAGACAATGACACTACATGAATGCAGGGTAGTTTGCTTGAGAAATTGTTCGTGTACGGCTTACACAAATCTGGACATACGCAATGGAGGAAGTGGGTGCTTGATATGGATTGACGAGTTAATTGACATCAGACAGCTATCTCAATCAGGACAGGATATCTACATTAGGATGTCTGCTTCAGAGATAG..................................................................................................................................................................................................................................GTTCTGCCGGATCAACAAGAAAGATAACTGTTATACTTGCAATAGCTTTGCCACTATTGGTTGCATTGATTCTGCTCGCTTTAGGTTTAGGCCTGATTCTTTGTAAACGTAAAAGGAGAGAGAATCCGGTGCTTACAACAACAG...............................................................................................................................GGATATTAGGTGGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="40315" PGL_stop="42472"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40315" e_stop="40479"/>
            <exon e_start="41758" e_stop="42472"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40315" e_stop="40479" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.962">
            <gDNA_intron_boundary i_start="40480" i_stop="41757" i_length="1278"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="41758" e_stop="42472" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40315" stop="40479"/>
              <exon start="41758" stop="42472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTAGACGTACAAACAATTTTTTTCCTCTGCTCAACAGCTAGCTTCTTCTCTACACCCACCCACCCCACTCCCACCGACATCTTCTGTACAGAAATGGCAATGCTTCAATGGTTTCCTCTTCTTTGCATTTTCTTCATCTCAGCTTCTGCTGCTAAAGTTCAAA : CCAAGGTAACTGATAATCCTGCTGATGAGCTGGTATCTGCCCTTAATAGTAACAGAACTGCGAATAAATTATCCTCCTTATACAGTAACCCTGGCTTGGCATGCTTGGCTCTGCAATATATAAAAGCATACGGAGGTGATTGTAAAGTAGTTGGAGGGCCAGATGGAAAGAAACCTGCTGAATCTGAATTCGCCCAAGAATTTGCCCCCAACTGTGGTGTGCAGGCATCATCGCTTGCTCAAATAACTGGAAGATTTCTCGCATGTCAATCTAAGTATGCGGAACCTTCTGAAGCATTCAATGATATTCTTATAAGAAATACCAAGAGTTTGGATATTCTCTATAGCAAGAATCACACTGAGGTTGGTGCTGCTGTGAGTGGCTCCGGTGGTGGTGGCCCCTATTTCTGGTGTGTACTCTTCAGTAATGGCAAACCAAAGAGTAGCTTTTCCACAGGTGGAGTTGAGCCTAAGGTAAGTAGACCTGGATGCTTCAGTGGTTCTAATGACCAATGCAGTGGTGCTAATACTTTGTCTCAAACCATATATCTCTGGACAATCACTGTAGGAGCTTCCGTTGCACTGCTTTATGCCTTAGGAGTATGAACCATCAGGGGATTTGTTTTTTGGCTTGATTGAACGGCCTTTTTTTTTGTTGGGAATGACTTCAATTTTTTGAATTATTATTTTGTGAGTGTTTTCGAGAACATTTCCTT</gDNA_template>
            <first_frame> K  *  T  Y  K  Q  F  F  S  S  A  Q  Q  L  A  S  S  L  H  P  P  T  P  L  P  P  T  S  S  V  Q  K  W  Q  C  F  N  G  F  L  F  F  A  F  S  S  S  Q  L  L  L  L  K  F  K  :  P  R  *  L  I  I  L  L  M  S  W  Y  L  P  L  I  V  T  E  L  R  I  N  Y  P  P  Y  T  V  T  L  A  W  H  A  W  L  C  N  I  *  K  H  T  E  V  I  V  K  *  L  E  G  Q  M  E  R  N  L  L  N  L  N  S  P  K  N  L  P  P  T  V  V  C  R  H  H  R  L  L  K  *  L  E  D  F  S  H  V  N  L  S  M  R  N  L  L  K  H  S  M  I  F  L  *  E  I  P  R  V  W  I  F  S  I  A  R  I  T  L  R  L  V  L  L  *  V  A  P  V  V  V  A  P  I  S  G  V  Y  S  S  V  M  A  N  Q  R  V  A  F  P  Q  V  E  L  S  L  R  *  V  D  L  D  A  S  V  V  L  M  T  N  A  V  V  L  I  L  C  L  K  P  Y  I  S  G  Q  S  L  *  E  L  P  L  H  C  F  M  P  *  E  Y  E  P  S  G  D  L  F  F  G  L  I  E  R  P  F  F  L  L  G  M  T  S  I  F  *  I  I  I  L  *  V  F  S  R  T  F  P  </first_frame>
            <second_frame>  S  R  R  T  N  N  F  F  P  L  L  N  S  *  L  L  L  Y  T  H  P  P  H  S  H  R  H  L  L  Y  R  N  G  N  A  S  M  V  S  S  S  L  H  F  L  H  L  S  F  C  C  *  S  S  N :   Q  G  N  *  *  S  C  *  *  A  G  I  C  P  *  *  *  Q  N  C  E  *  I  I  L  L  I  Q  *  P  W  L  G  M  L  G  S  A  I  Y  K  S  I  R  R  *  L  *  S  S  W  R  A  R  W  K  E  T  C  *  I  *  I  R  P  R  I  C  P  Q  L  W  C  A  G  I  I  A  C  S  N  N  W  K  I  S  R  M  S  I  *  V  C  G  T  F  *  S  I  Q  *  Y  S  Y  K  K  Y  Q  E  F  G  Y  S  L  *  Q  E  S  H  *  G  W  C  C  C  E  W  L  R  W  W  W  P  L  F  L  V  C  T  L  Q  *  W  Q  T  K  E  *  L  F  H  R  W  S  *  A  *  G  K  *  T  W  M  L  Q  W  F  *  *  P  M  Q  W  C  *  Y  F  V  S  N  H  I  S  L  D  N  H  C  R  S  F  R  C  T  A  L  C  L  R  S  M  N  H  Q  G  I  C  F  L  A  *  L  N  G  L  F  F  C  W  E  *  L  Q  F  F  E  L  L  F  C  E  C  F  R  E  H  F  L </second_frame>
            <third_frame>   V  D  V  Q  T  I  F  F  L  C  S  T  A  S  F  F  S  T  P  T  H  P  T  P  T  D  I  F  C  T  E  M  A  M  L  Q  W  F  P  L  L  C  I  F  F  I  S  A  S  A  A  K  V  Q   : T  K  V  T  D  N  P  A  D  E  L  V  S  A  L  N  S  N  R  T  A  N  K  L  S  S  L  Y  S  N  P  G  L  A  C  L  A  L  Q  Y  I  K  A  Y  G  G  D  C  K  V  V  G  G  P  D  G  K  K  P  A  E  S  E  F  A  Q  E  F  A  P  N  C  G  V  Q  A  S  S  L  A  Q  I  T  G  R  F  L  A  C  Q  S  K  Y  A  E  P  S  E  A  F  N  D  I  L  I  R  N  T  K  S  L  D  I  L  Y  S  K  N  H  T  E  V  G  A  A  V  S  G  S  G  G  G  G  P  Y  F  W  C  V  L  F  S  N  G  K  P  K  S  S  F  S  T  G  G  V  E  P  K  V  S  R  P  G  C  F  S  G  S  N  D  Q  C  S  G  A  N  T  L  S  Q  T  I  Y  L  W  T  I  T  V  G  A  S  V  A  L  L  Y  A  L  G  V  *  T  I  R  G  F  V  F  W  L  D  *  T  A  F  F  F  V  G  N  D  F  N  F  L  N  Y  Y  F  V  S  V  F  E  N  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0121N11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40317" stop="40479"/>
                    <exon start="41758" stop="42362"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDVQTIFFLCSTASFFSTPTHPTPTDIFCTEMAMLQWFPLLCIFFISASAAKVQTKVTDNPADELVSALNSNRTANKLSSLYSNPGLACLALQYIKAYGGDCKVVGGPDGKKPAESEFAQEFAPNCGVQASSLAQITGRFLACQSKYAEPSEAFNDILIRNTKSLDILYSKNHTEVGAAVSGSGGGGPYFWCVLFSNGKPKSSFSTGGVEPKVSRPGCFSGSNDQCSGANTLSQTIYLWTITVGASVALLYALGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="44294" PGL_stop="44773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44294" e_stop="44773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44294" e_stop="44773" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44294" stop="44773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331020" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACAGCCAATAATCCTAGCCAGTCCAAAGTCTGAAATCTTGGGATTCCATTCACTGTCCAGTAAAATGTTGCTCGTCTTTAGATCTCTATGTATGATCCTTAATCTGGAATCCTGGTGAAGATAAAGAATCCCTCTTGATATTCCCATTGCAATACGAAATCGATTTTCCCAGGGAAGTTGTCTCTTCCTGCATTCATCTGCAGAAACATCAGTTCGTTTTGCGTTAGCAGAACAATACTGATATGATAAGATGAATTTTAGACGAAATGAGTCAAGAGAATCGAACCAAAGATGAAGAAGTCCAAGCTATTGTTTGGCATATATTCATAAATTAGCATCCTTTCTTCCCCTTCAAGACAACAACCTAGAAGCCTAACTAGATTTCTATGCTGAAGTTTGGAAATCAGAACAACTTCATTCTTCAACTCCTCAAAACCTTGTCCGGAATGTTTGGAGAGCTTCTTTACTGCTATTTCTG</gDNA_template>
            <first_frame> S  Q  P  I  I  L  A  S  P  K  S  E  I  L  G  F  H  S  L  S  S  K  M  L  L  V  F  R  S  L  C  M  I  L  N  L  E  S  W  *  R  *  R  I  P  L  D  I  P  I  A  I  R  N  R  F  S  Q  G  S  C  L  F  L  H  S  S  A  E  T  S  V  R  F  A  L  A  E  Q  Y  *  Y  D  K  M  N  F  R  R  N  E  S  R  E  S  N  Q  R  *  R  S  P  S  Y  C  L  A  Y  I  H  K  L  A  S  F  L  P  L  Q  D  N  N  L  E  A  *  L  D  F  Y  A  E  V  W  K  S  E  Q  L  H  S  S  T  P  Q  N  L  V  R  N  V  W  R  A  S  L  L  L  F  L </first_frame>
            <second_frame>  H  S  Q  *  S  *  P  V  Q  S  L  K  S  W  D  S  I  H  C  P  V  K  C  C  S  S  L  D  L  Y  V  *  S  L  I  W  N  P  G  E  D  K  E  S  L  L  I  F  P  L  Q  Y  E  I  D  F  P  R  E  V  V  S  S  C  I  H  L  Q  K  H  Q  F  V  L  R  *  Q  N  N  T  D  M  I  R  *  I  L  D  E  M  S  Q  E  N  R  T  K  D  E  E  V  Q  A  I  V  W  H  I  F  I  N  *  H  P  F  F  P  F  K  T  T  T  *  K  P  N  *  I  S  M  L  K  F  G  N  Q  N  N  F  I  L  Q  L  L  K  T  L  S  G  M  F  G  E  L  L  Y  C  Y  F   </second_frame>
            <third_frame>   T  A  N  N  P  S  Q  S  K  V  *  N  L  G  I  P  F  T  V  Q  *  N  V  A  R  L  *  I  S  M  Y  D  P  *  S  G  I  L  V  K  I  K  N  P  S  *  Y  S  H  C  N  T  K  S  I  F  P  G  K  L  S  L  P  A  F  I  C  R  N  I  S  S  F  C  V  S  R  T  I  L  I  *  *  D  E  F  *  T  K  *  V  K  R  I  E  P  K  M  K  K  S  K  L  L  F  G  I  Y  S  *  I  S  I  L  S  S  P  S  R  Q  Q  P  R  S  L  T  R  F  L  C  *  S  L  E  I  R  T  T  S  F  F  N  S  S  K  P  C  P  E  C  L  E  S  F  F  T  A  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0121N11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="54989" PGL_stop="55852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54989" e_stop="55038"/>
            <exon e_start="55156" e_stop="55393"/>
            <exon e_start="55548" e_stop="55698"/>
            <exon e_start="55843" e_stop="55852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.885" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54989" e_stop="55038" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.885" acc_prob="0.871">
            <gDNA_intron_boundary i_start="55039" i_stop="55155" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55156" e_stop="55393" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="55394" i_stop="55547" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="55548" e_stop="55698" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55699" i_stop="55842" i_length="144"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55843" e_stop="55852" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54989" stop="55038"/>
              <exon start="55156" stop="55393"/>
              <exon start="55548" stop="55698"/>
              <exon start="55843" stop="55852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGGTCTACGAATACTTGCGGAACAAGAGCCTTGATATATATATATTTG : ATGAAGAAAGGAGTACATTACTTGATTGGCCAAAGCGCTTTAACATTATCAATGGAATTGCTCGTGGACTGATGTACCTGCATCAAGATTCGAGGCTCAGAATCATCCACAGAGACTTGAAAGCTAGCAATGTCTTACTTGATACTGATATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAAGTTTTGGAGGAGATGAGACAGGAGCCAATACACGTCGTGTTGTTGGAACATA : TGGTTACATGTCTCCAGAATATGCAGTCGATGGGATATTCTCAGTGAAATCAGATGTCTTTAGCTTTGGAGTATTAGTACTAGAGATTGTGAGCGGAAAGAAGAACAGACGATTCGTTCATCCAGACCACCACCTCAACCTTCTTGGACAT : ACATATATGC</gDNA_template>
            <first_frame> V  G  L  R  I  L  A  E  Q  E  P  *  Y  I  Y  I  * :   *  R  K  E  Y  I  T  *  L  A  K  A  L  *  H  Y  Q  W  N  C  S  W  T  D  V  P  A  S  R  F  E  A  Q  N  H  P  Q  R  L  E  S  *  Q  C  L  T  *  Y  *  Y  E  P  K  D  I  R  F  W  D  G  *  K  F  W  R  R  *  D  R  S  Q  Y  T  S  C  C  W  N  I  :  W  L  H  V  S  R  I  C  S  R  W  D  I  L  S  E  I  R  C  L  *  L  W  S  I  S  T  R  D  C  E  R  K  E  E  Q  T  I  R  S  S  R  P  P  P  Q  P  S  W  T   : Y  I  Y   </first_frame>
            <second_frame>  L  V  Y  E  Y  L  R  N  K  S  L  D  I  Y  I  F   : D  E  E  R  S  T  L  L  D  W  P  K  R  F  N  I  I  N  G  I  A  R  G  L  M  Y  L  H  Q  D  S  R  L  R  I  I  H  R  D  L  K  A  S  N  V  L  L  D  T  D  M  N  P  K  I  S  D  F  G  M  A  R  S  F  G  G  D  E  T  G  A  N  T  R  R  V  V  G  T  Y :   G  Y  M  S  P  E  Y  A  V  D  G  I  F  S  V  K  S  D  V  F  S  F  G  V  L  V  L  E  I  V  S  G  K  K  N  R  R  F  V  H  P  D  H  H  L  N  L  L  G  H  :  T  Y  M  </second_frame>
            <third_frame>   W  S  T  N  T  C  G  T  R  A  L  I  Y  I  Y  L  :  M  K  K  G  V  H  Y  L  I  G  Q  S  A  L  T  L  S  M  E  L  L  V  D  *  C  T  C  I  K  I  R  G  S  E  S  S  T  E  T  *  K  L  A  M  S  Y  L  I  L  I  *  T  Q  R  Y  Q  I  L  G  W  L  E  V  L  E  E  M  R  Q  E  P  I  H  V  V  L  L  E  H   : M  V  T  C  L  Q  N  M  Q  S  M  G  Y  S  Q  *  N  Q  M  S  L  A  L  E  Y  *  Y  *  R  L  *  A  E  R  R  T  D  D  S  F  I  Q  T  T  T  S  T  F  L  D  I :   H  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0121N11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54990" stop="55038"/>
                    <exon start="55156" stop="55393"/>
                    <exon start="55548" stop="55698"/>
                    <exon start="55843" stop="55851"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVYEYLRNKSLDIYIFDEERSTLLDWPKRFNIINGIARGLMYLHQDSRLRIIHRDLKASNVLLDTDMNPKISDFGMARSFGGDETGANTRRVVGTYGYMSPEYAVDGIFSVKSDVFSFGVLVLEIVSGKKNRRFVHPDHHLNLLGHTYM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="55898" PGL_stop="56468"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55898" e_stop="56468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="55898" e_stop="56468" e_length="571"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55898" stop="56468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGACTCATGTAATATATCAGAAGTACAAAGATCAATCCATGTAGGTTTATTATGTGTTCAACAAAATCCAGTGGACAGGCCAAGTATGTCAACTGTGATTATGATGCTGACCAATGAAGGCATTTTGCCATCAGCTAAACATCCTGGCTTCTTTACTGAAAGGAAAATTGGTGAAGTTGATCAATTTTCTTGGAGTACACAAACACCAAGTTCTATAAATGAAGTTACCATCACATTGTTGGATGCTCGATAAGAAGAATGTGGAGTGATTTCTCAGATGATCACTCAATTAATTGTTACATTCTCAGAAAATCACCTTCTTTGTTTAAACGAACATTGAAGTGTGATTTTATGAGATAACAACTATTACTTAAATAACCATCTTAGAAATCAACCAGAAGAATGTCATAGTTGGTTCCATCTTTCATCATTTCTTAGAATTGTATTAAAATCATCTCCTCTATTCTATTTTATTTATTTAGTTAGAAAATTTTGTATTGTAACAACATACACAGTGTGATCCCATTTGTATTCTTTTGTAGTAATATGTTTGTCTACATTTTACGTTAG</gDNA_template>
            <first_frame> W  T  H  V  I  Y  Q  K  Y  K  D  Q  S  M  *  V  Y  Y  V  F  N  K  I  Q  W  T  G  Q  V  C  Q  L  *  L  *  C  *  P  M  K  A  F  C  H  Q  L  N  I  L  A  S  L  L  K  G  K  L  V  K  L  I  N  F  L  G  V  H  K  H  Q  V  L  *  M  K  L  P  S  H  C  W  M  L  D  K  K  N  V  E  *  F  L  R  *  S  L  N  *  L  L  H  S  Q  K  I  T  F  F  V  *  T  N  I  E  V  *  F  Y  E  I  T  T  I  T  *  I  T  I  L  E  I  N  Q  K  N  V  I  V  G  S  I  F  H  H  F  L  E  L  Y  *  N  H  L  L  Y  S  I  L  F  I  *  L  E  N  F  V  L  *  Q  H  T  Q  C  D  P  I  C  I  L  L  *  *  Y  V  C  L  H  F  T  L  </first_frame>
            <second_frame>  G  L  M  *  Y  I  R  S  T  K  I  N  P  C  R  F  I  M  C  S  T  K  S  S  G  Q  A  K  Y  V  N  C  D  Y  D  A  D  Q  *  R  H  F  A  I  S  *  T  S  W  L  L  Y  *  K  E  N  W  *  S  *  S  I  F  L  E  Y  T  N  T  K  F  Y  K  *  S  Y  H  H  I  V  G  C  S  I  R  R  M  W  S  D  F  S  D  D  H  S  I  N  C  Y  I  L  R  K  S  P  S  L  F  K  R  T  L  K  C  D  F  M  R  *  Q  L  L  L  K  *  P  S  *  K  S  T  R  R  M  S  *  L  V  P  S  F  I  I  S  *  N  C  I  K  I  I  S  S  I  L  F  Y  L  F  S  *  K  I  L  Y  C  N  N  I  H  S  V  I  P  F  V  F  F  C  S  N  M  F  V  Y  I  L  R  * </second_frame>
            <third_frame>   D  S  C  N  I  S  E  V  Q  R  S  I  H  V  G  L  L  C  V  Q  Q  N  P  V  D  R  P  S  M  S  T  V  I  M  M  L  T  N  E  G  I  L  P  S  A  K  H  P  G  F  F  T  E  R  K  I  G  E  V  D  Q  F  S  W  S  T  Q  T  P  S  S  I  N  E  V  T  I  T  L  L  D  A  R  *  E  E  C  G  V  I  S  Q  M  I  T  Q  L  I  V  T  F  S  E  N  H  L  L  C  L  N  E  H  *  S  V  I  L  *  D  N  N  Y  Y  L  N  N  H  L  R  N  Q  P  E  E  C  H  S  W  F  H  L  S  S  F  L  R  I  V  L  K  S  S  P  L  F  Y  F  I  Y  L  V  R  K  F  C  I  V  T  T  Y  T  V  *  S  H  L  Y  S  F  V  V  I  C  L  S  T  F  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0121N11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55900" stop="56151"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSCNISEVQRSIHVGLLCVQQNPVDRPSMSTVIMMLTNEGILPSAKHPGFFTERKIGEVDQFSWSTQTPSSINEVTITLLDAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="75867" PGL_stop="75020"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75867" e_stop="75818"/>
            <exon e_start="75700" e_stop="75463"/>
            <exon e_start="75384" e_stop="75234"/>
            <exon e_start="75029" e_stop="75020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.753" acc_prob="0.483" e_score="0.820"/>
          <exon-intron don_prob="0.936" acc_prob="0.996" e_score="0.920"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="0.934"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.820">
            <gDNA_exon_boundary e_start="75867" e_stop="75818" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.753" acc_prob="0.483">
            <gDNA_intron_boundary i_start="75817" i_stop="75701" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="75700" e_stop="75463" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75462" i_stop="75385" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.934">
            <gDNA_exon_boundary e_start="75384" e_stop="75234" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75233" i_stop="75030" i_length="204"/>
          </intron>
          <exon e_serial="4" e_score="0.700">
            <gDNA_exon_boundary e_start="75029" e_stop="75020" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75867" stop="75818"/>
              <exon start="75700" stop="75463"/>
              <exon start="75384" stop="75234"/>
              <exon start="75029" stop="75020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGGTGTATGAGTACTTGCCAAACAAAAGCCTGGAATTATATATATTTG : ATGAAGAAAGGAGAGCATTACTTGATTGGCCTAAGCGCTTCAATATTATCAATGGAATTGCTCGAGGACTGATGTATCTTCATCAAGATTCTAGGCTCAGAATCATCCACAGAGACTTGAAAGCTAGCAACGTCTTACTTGATATTGAAATGAATCCAAAAATATCAGATTTTGGGATGGCTAGAAGTTTCAGGGGAGATGAAACAGGAGCCAATACACGCCGTGTTGTTGGAACATA : TGGTTACATGTCCCCGGAATATGCAGTCGAGGGGATATTCTCAGTGAAATCAGATGTCTTTAGCTTTGGGGTATTAGTACTAGAGATTGTGAGTGGAAAGAAGAATCGACGATTTGTTCATCCAGACCACCACCTCAATCTTCTTGGACAT : GCATGGATGC</gDNA_template>
            <first_frame> V  G  V  *  V  L  A  K  Q  K  P  G  I  I  Y  I  * :   *  R  K  E  S  I  T  *  L  A  *  A  L  Q  Y  Y  Q  W  N  C  S  R  T  D  V  S  S  S  R  F  *  A  Q  N  H  P  Q  R  L  E  S  *  Q  R  L  T  *  Y  *  N  E  S  K  N  I  R  F  W  D  G  *  K  F  Q  G  R  *  N  R  S  Q  Y  T  P  C  C  W  N  I  :  W  L  H  V  P  G  I  C  S  R  G  D  I  L  S  E  I  R  C  L  *  L  W  G  I  S  T  R  D  C  E  W  K  E  E  S  T  I  C  S  S  R  P  P  P  Q  S  S  W  T   : C  M  D   </first_frame>
            <second_frame>  L  V  Y  E  Y  L  P  N  K  S  L  E  L  Y  I  F   : D  E  E  R  R  A  L  L  D  W  P  K  R  F  N  I  I  N  G  I  A  R  G  L  M  Y  L  H  Q  D  S  R  L  R  I  I  H  R  D  L  K  A  S  N  V  L  L  D  I  E  M  N  P  K  I  S  D  F  G  M  A  R  S  F  R  G  D  E  T  G  A  N  T  R  R  V  V  G  T  Y :   G  Y  M  S  P  E  Y  A  V  E  G  I  F  S  V  K  S  D  V  F  S  F  G  V  L  V  L  E  I  V  S  G  K  K  N  R  R  F  V  H  P  D  H  H  L  N  L  L  G  H  :  A  W  M  </second_frame>
            <third_frame>   W  C  M  S  T  C  Q  T  K  A  W  N  Y  I  Y  L  :  M  K  K  G  E  H  Y  L  I  G  L  S  A  S  I  L  S  M  E  L  L  E  D  *  C  I  F  I  K  I  L  G  S  E  S  S  T  E  T  *  K  L  A  T  S  Y  L  I  L  K  *  I  Q  K  Y  Q  I  L  G  W  L  E  V  S  G  E  M  K  Q  E  P  I  H  A  V  L  L  E  H   : M  V  T  C  P  R  N  M  Q  S  R  G  Y  S  Q  *  N  Q  M  S  L  A  L  G  Y  *  Y  *  R  L  *  V  E  R  R  I  D  D  L  F  I  Q  T  T  T  S  I  F  L  D  M :   H  G  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0121N11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75866" stop="75818"/>
                    <exon start="75700" stop="75463"/>
                    <exon start="75384" stop="75234"/>
                    <exon start="75029" stop="75021"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVYEYLPNKSLELYIFDEERRALLDWPKRFNIINGIARGLMYLHQDSRLRIIHRDLKASNVLLDIEMNPKISDFGMARSFRGDETGANTRRVVGTYGYMSPEYAVEGIFSVKSDVFSFGVLVLEIVSGKKNRRFVHPDHHLNLLGHAWM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="77297" PGL_stop="76523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77297" e_stop="77037"/>
            <exon e_start="76810" e_stop="76667"/>
            <exon e_start="76539" e_stop="76523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77297" e_stop="77037" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.970">
            <gDNA_intron_boundary i_start="77036" i_stop="76811" i_length="226"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76810" e_stop="76667" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.973">
            <gDNA_intron_boundary i_start="76666" i_stop="76540" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76539" e_stop="76523" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77297" stop="77037"/>
              <exon start="76810" stop="76667"/>
              <exon start="76539" stop="76523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATTGCACAGGAGATGGATTTATTAAGTATTCTGGTGTTAAACTGCCTGATACGCGAAATTCTTGGTTCAATGAGACAATGACACTACATGAATGCAGGGTAGTTTGCTTGAGAAATTGTTCGTGTACGGCTTACACAAATCTGGACATACGCAATGGAGGAAGTGGGTGCTTGATATGGATTGACGAGTTAATTGACATCAGACAGCTATCTCAATCAGGACAGGATATCTACATTAGGATGTCTGCTTCAGAGATAG : GTTCTGCCGGATCAACAAGAAAGATAACTGTTATACTTGCAATAGCTTTGCCACTATTGGTTGCATTGATTCTGCTCGCTTTAGGTTTAGGCCTGATTCTTTGTAAACGTAAAAGGAGAGAGAATCCGGTGCTTACAACAACAG : GGATATTAGGTGGTCAC</gDNA_template>
            <first_frame> *  I  A  Q  E  M  D  L  L  S  I  L  V  L  N  C  L  I  R  E  I  L  G  S  M  R  Q  *  H  Y  M  N  A  G  *  F  A  *  E  I  V  R  V  R  L  T  Q  I  W  T  Y  A  M  E  E  V  G  A  *  Y  G  L  T  S  *  L  T  S  D  S  Y  L  N  Q  D  R  I  S  T  L  G  C  L  L  Q  R  *  :  V  L  P  D  Q  Q  E  R  *  L  L  Y  L  Q  *  L  C  H  Y  W  L  H  *  F  C  S  L  *  V  *  A  *  F  F  V  N  V  K  G  E  R  I  R  C  L  Q  Q  Q  :  G  Y  *  V  V   </first_frame>
            <second_frame>  E  L  H  R  R  W  I  Y  *  V  F  W  C  *  T  A  *  Y  A  K  F  L  V  Q  *  D  N  D  T  T  *  M  Q  G  S  L  L  E  K  L  F  V  Y  G  L  H  K  S  G  H  T  Q  W  R  K  W  V  L  D  M  D  *  R  V  N  *  H  Q  T  A  I  S  I  R  T  G  Y  L  H  *  D  V  C  F  R  D  R :   F  C  R  I  N  K  K  D  N  C  Y  T  C  N  S  F  A  T  I  G  C  I  D  S  A  R  F  R  F  R  P  D  S  L  *  T  *  K  E  R  E  S  G  A  Y  N  N  R :   D  I  R  W  S  </second_frame>
            <third_frame>   N  C  T  G  D  G  F  I  K  Y  S  G  V  K  L  P  D  T  R  N  S  W  F  N  E  T  M  T  L  H  E  C  R  V  V  C  L  R  N  C  S  C  T  A  Y  T  N  L  D  I  R  N  G  G  S  G  C  L  I  W  I  D  E  L  I  D  I  R  Q  L  S  Q  S  G  Q  D  I  Y  I  R  M  S  A  S  E  I   : G  S  A  G  S  T  R  K  I  T  V  I  L  A  I  A  L  P  L  L  V  A  L  I  L  L  A  L  G  L  G  L  I  L  C  K  R  K  R  R  E  N  P  V  L  T  T  T   : G  I  L  G  G  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0121N11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77295" stop="77037"/>
                    <exon start="76810" stop="76667"/>
                    <exon start="76539" stop="76523"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NCTGDGFIKYSGVKLPDTRNSWFNETMTLHECRVVCLRNCSCTAYTNLDIRNGGSGCLIWIDELIDIRQLSQSGQDIYIRMSASEIGSAGSTRKITVILAIALPLLVALILLALGLGLILCKRKRRENPVLTTTGILGGH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 14 chains have been computed
$ 
$ memory statistics:
$ 11920 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 1986 bytes was the average size of a spliced alignment
$ 11696 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1949 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 14 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-05 23:39:37
-->
