<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 18:23:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E425925" ref_strand="+" ref_description="SGN-E425925 	[STM-45-D24]">
      <seq>ccgcaatgtccaatttatattttccgaagattttggtaccgagggacgaggagggtactttgaccactacggcatcatccgtgatattatgcaaaatcatctccttcaaatattagcattgtttgctatggaaacacctgtcagcttggatgctgaggacatcagaaatgagaaggttaaagttttaaggtcaatgaggccattgcaacttgaagatgttgttcttggacagtataagggtcatagcaatggtgctaaatcatatccagcttacacagatgatccaactgtgccaaatggcagtatcactccaacattttctgctgctgcactcttcattgataatgcacgttgggacggggttcctttcctcatgaaagcaggaaaagctctccatacgaagagggcagagatcagggtccagttcagacatgttcccggaaatttgtacaaaaggaactttggaactgacatggataaagcaaccaatgagctagttctgcgcctacaacctgatgaagccatatatctgaaaattaacaacaaggtccctggtcttgggatgagacttgaccggagtgaccttaatcttctttataaagcaaagtatcgaggtgaaataccagatgcatatgagcggcttttgttagatgcaatagaaggagagcgaagattgttcataagaagcgatgaacttgatgctgcatgggctctatttacaccgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="-" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="12922" stop="10516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12622" g_stop="12569" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12568" i_stop="12484" i_length="85">
            <donor d_prob="0.724" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12483" g_stop="12363" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="175" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12362" i_stop="12249" i_length="114">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12248" g_stop="12019" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="405" r_length="230" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12018" i_stop="11922" i_length="97">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11921" g_stop="11721" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="606" r_length="201" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11720" i_stop="10937" i_length="784">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10936" g_stop="10814" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="729" r_length="123" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="-" ref_id="SGN-E425925" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12622" e_stop="12569"/>
          <exon e_start="12483" e_stop="12363"/>
          <exon e_start="12248" e_stop="12019"/>
          <exon e_start="11921" e_stop="11721"/>
          <exon e_start="10936" e_stop="10814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAATGTCCAATTTATATTTTCTGAAGATTTTGGTACCGAGGGACGAGGAGGGTGAGGCTCATTACTCTGCCGCTGATACTTAAAAAGTAGTATTCTGTTGTAGTTGGATCTCAATCTTTCTGCTCTTTCTTCTCAGATACTTTGACCACTACGGGATCATCCGTGATATTATGCAAAATCATCTCCTTCAAATACTAGCATTGTTTGCTATGGAAACACCTGTCAGCTTGGATGCTGAGGACATCAGAAATGAAAAGGTATGCACATTTATGCCACAAATTATTCTCGTAAATCCTGCATTCCGTAAATCATCCAAGTGAATATGATTAAAACTAGAGGAAATATACTAAAACATGGTCCATGTGATTCAGGTTAAAGTTTTAAGGTCAATGAGGCCATTGCAACTTGAAGATATTGTTCTTGGACAGTATAAGGGTCATAGCAAGGGTGCTAAATCATACCCAGCTTACACAGATGATCCAACTGTGCCAAATGGCAGTATCACTCCAACATTTTCTGCTGCTGCACTCTTTATTGATAATGCACGTTGGGACGGGGTTCCTTTCCTCATGAAAGCAGGAAAAGCTCTCCATACAAAGAGGTCGCTAGATTGTTATTTCCTCCATAGTGATATATTTTCAGGTATATATCCTGATAACCACAAAATTATTGGAGATTTTGTTTTACTGGAACTGCAGGGCAGAGATCAGGGTCCAGTTCAGACATGTCCCCGGAAATTTGTACAAAAGGAACTTTGGAGCTGATATGGATAAGGCAACCAATGAGCTAGTTCTGCGTCTACAACCCGATGAAGCCATATATCTGAAAATTAACAACAAGGTTCCTGGTCTTGGAATGAGACTTGACCGGAGTGACCTTAATCTTCTTTACAAAGCAAAGTAAGAGACTCGTGCTGATCTAGAGTTAGTAACAGCTTATTGGTGTGTTCTGTATGGATTTTTTCATGTTCGGTTTCTAAACATTTTCTATAGGAAAACAAGTTCCTTAAAAATAAGGAAAATGACTTCCCTAATAGAAGTAGAGAAAACATGTTCCATAAATGATATTCCTAGTTCATTGTCTACTCCCCAAGATCCTAACTCCCACCCCTTGATCATCCCACCATGCGCCACTCCCGAACCCCACTTCCCACCCCTGTTTTGCTAGATTTTATATAAAATGTTTTCGGTATAGTATTTTCTTGCGTACTAAACTGAGCCGTAGAAAATAAGTCAGAAACCAACTTTTTTCCCCAAGAAAACGTTTTCCTTCGTACCGAATACACCCAATGACAGCAAAAATTTTCTTGTAGTTCACCATTGCCCCTTGTTTGTTCTATGATCAGGATGCTTTCAGTATGGATGACACATACATATGGTGTAGCACCTGGAATTTAATTTTCACCGCATTATCTGATATAGAGCTAGGAATGTAATTAATAACAGATTTCTTGCCGTTCTTCAATGAGATTTGTTTGAACTATGAAGCTGACACTTGCTTAAATTAGAAAGTGTGGACAGTGGACGTTATCGGTTTATAGAAGAATTGCGGGTATAAGACTTTAATCTACCTCACTTGCTAACGTTATATATGATGGATGACTTATCTGTGTGATTGATTTAAGATTACATGATCAAGATGAACACTATATTTACATTGACTTCAATGGCTCATTATGTAAAGGTATCGAGGTGAAATACCAGATGCATATGAGCGGCTTTTGTTAGATGCAATAGAAGGAGAGCGAAGATTGTTCATAAGAAGCGATGAACTTGATGCTGCATGGGCTCTATTTACGCCGTTGTT</genome_strand>
        <mrna_strand>CCGCAATGTCCAATTTATATTTTCCGAAGATTTTGGTACCGAGGGACGAGGAGG.....................................................................................GTACTTTGACCACTACGGCATCATCCGTGATATTATGCAAAATCATCTCCTTCAAATATTAGCATTGTTTGCTATGGAAACACCTGTCAGCTTGGATGCTGAGGACATCAGAAATGAGAAG..................................................................................................................GTTAAAGTTTTAAGGTCAATGAGGCCATTGCAACTTGAAGATGTTGTTCTTGGACAGTATAAGGGTCATAGCAATGGTGCTAAATCATATCCAGCTTACACAGATGATCCAACTGTGCCAAATGGCAGTATCACTCCAACATTTTCTGCTGCTGCACTCTTCATTGATAATGCACGTTGGGACGGGGTTCCTTTCCTCATGAAAGCAGGAAAAGCTCTCCATACGAAGAG.................................................................................................GGCAGAGATCAGGGTCCAGTTCAGACATGTTCCCGGAAATTTGTACAAAAGGAACTTTGGAACTGACATGGATAAAGCAACCAATGAGCTAGTTCTGCGCCTACAACCTGATGAAGCCATATATCTGAAAATTAACAACAAGGTCCCTGGTCTTGGGATGAGACTTGACCGGAGTGACCTTAATCTTCTTTATAAAGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGAGGTGAAATACCAGATGCATATGAGCGGCTTTTGTTAGATGCAATAGAAGGAGAGCGAAGATTGTTCATAAGAAGCGATGAACTTGATGCTGCATGGGCTCTATTTACACCGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E455641" ref_strand="+" ref_description="SGN-E455641 	[cSTS-26-J24]">
      <seq>ccgcaatgtccaatttatattttccgaagattttggtaccgagggacgaggagggtactttgaccactacggcatcatccgtgatattatgcaaaatcatctccttcaaatattagcattgtttgctatggaaacacctgtcagcttggatgctgaggacatcagaaatgagaaggttaaagttttaaggtcaatgaggccattgcaacttgaagatgttgttcttggacagtataagggtcatagcaatggtgctaaatcatatccagcttacacagatgatccaactgtgccaaatggcagtatcactccaacattttctgctgctgcactcttcattgataatgcacgttgggacggggttcctttcctcatgaaagcaggaaaagctctccatacgaagagggcagagatcagggtccagttcagacatgttcccggaaatttgtacaaaaggaactttggaactgacatggataaagcaaccaatgagctagttctgcgcctacaacctgatgaagccatatatctgaaaattaacaacaaggtccctggtcttgggatgagacttgaccggagtgaccttaatcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="-" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="12922" stop="11432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12622" g_stop="12569" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12568" i_stop="12484" i_length="85">
            <donor d_prob="0.724" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12483" g_stop="12363" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="175" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12362" i_stop="12249" i_length="114">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12248" g_stop="12019" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="405" r_length="230" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12018" i_stop="11922" i_length="97">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11921" g_stop="11732" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="595" r_length="190" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="-" ref_id="SGN-E455641" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12622" e_stop="12569"/>
          <exon e_start="12483" e_stop="12363"/>
          <exon e_start="12248" e_stop="12019"/>
          <exon e_start="11921" e_stop="11732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAATGTCCAATTTATATTTTCTGAAGATTTTGGTACCGAGGGACGAGGAGGGTGAGGCTCATTACTCTGCCGCTGATACTTAAAAAGTAGTATTCTGTTGTAGTTGGATCTCAATCTTTCTGCTCTTTCTTCTCAGATACTTTGACCACTACGGGATCATCCGTGATATTATGCAAAATCATCTCCTTCAAATACTAGCATTGTTTGCTATGGAAACACCTGTCAGCTTGGATGCTGAGGACATCAGAAATGAAAAGGTATGCACATTTATGCCACAAATTATTCTCGTAAATCCTGCATTCCGTAAATCATCCAAGTGAATATGATTAAAACTAGAGGAAATATACTAAAACATGGTCCATGTGATTCAGGTTAAAGTTTTAAGGTCAATGAGGCCATTGCAACTTGAAGATATTGTTCTTGGACAGTATAAGGGTCATAGCAAGGGTGCTAAATCATACCCAGCTTACACAGATGATCCAACTGTGCCAAATGGCAGTATCACTCCAACATTTTCTGCTGCTGCACTCTTTATTGATAATGCACGTTGGGACGGGGTTCCTTTCCTCATGAAAGCAGGAAAAGCTCTCCATACAAAGAGGTCGCTAGATTGTTATTTCCTCCATAGTGATATATTTTCAGGTATATATCCTGATAACCACAAAATTATTGGAGATTTTGTTTTACTGGAACTGCAGGGCAGAGATCAGGGTCCAGTTCAGACATGTCCCCGGAAATTTGTACAAAAGGAACTTTGGAGCTGATATGGATAAGGCAACCAATGAGCTAGTTCTGCGTCTACAACCCGATGAAGCCATATATCTGAAAATTAACAACAAGGTTCCTGGTCTTGGAATGAGACTTGACCGGAGTGACCTTAATCTTCTT</genome_strand>
        <mrna_strand>CCGCAATGTCCAATTTATATTTTCCGAAGATTTTGGTACCGAGGGACGAGGAGG.....................................................................................GTACTTTGACCACTACGGCATCATCCGTGATATTATGCAAAATCATCTCCTTCAAATATTAGCATTGTTTGCTATGGAAACACCTGTCAGCTTGGATGCTGAGGACATCAGAAATGAGAAG..................................................................................................................GTTAAAGTTTTAAGGTCAATGAGGCCATTGCAACTTGAAGATGTTGTTCTTGGACAGTATAAGGGTCATAGCAATGGTGCTAAATCATATCCAGCTTACACAGATGATCCAACTGTGCCAAATGGCAGTATCACTCCAACATTTTCTGCTGCTGCACTCTTCATTGATAATGCACGTTGGGACGGGGTTCCTTTCCTCATGAAAGCAGGAAAAGCTCTCCATACGAAGAG.................................................................................................GGCAGAGATCAGGGTCCAGTTCAGACATGTTCCCGGAAATTTGTACAAAAGGAACTTTGGAACTGACATGGATAAAGCAACCAATGAGCTAGTTCTGCGCCTACAACCTGATGAAGCCATATATCTGAAAATTAACAACAAGGTCCCTGGTCTTGGGATGAGACTTGACCGGAGTGACCTTAATCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E455619" ref_strand="+" ref_description="SGN-E455619 	[cSTS-26-F24]">
      <seq>atattttccgaagattttggtaccgagggacgaggagggtactttgaccactacggcttttttcgtgatattatgcaaaatcatctccttcaaatattagcattgtttgctatggaaacacctgtcagcttggatgctgaggacatcagaaatgagaaggttaaagttttaaggtcaatgaggccattgcaacttgaagatgttgttcttggacagtataagggtcatagcaatggtgctaaatcatatccagcttacacagatgatccaactgtgccaaatggcagtatcactccaacattttctgctgctgcactcttcattgataatgcacgttgggacggggttcctttcctcatgaaagcaggaaaagctctccatacgaagagggcagagatcagggtccagttcagacatgttcccggaaatttgtacaaaaggaactttggaactgacatggataaagcaaccaatgagctagttctgcgcctacaacctgatgaagccatatatctgaaaattaacaacaaggtccctggtctttggatgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="-" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="12906" stop="11458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12606" g_stop="12569" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12568" i_stop="12484" i_length="85">
            <donor d_prob="0.724" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12483" g_stop="12363" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="159" r_length="121" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12362" i_stop="12249" i_length="114">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12248" g_stop="12019" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="389" r_length="230" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12018" i_stop="11922" i_length="97">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11921" g_stop="11758" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="553" r_length="164" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="-" ref_id="SGN-E455619" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12606" e_stop="12569"/>
          <exon e_start="12483" e_stop="12363"/>
          <exon e_start="12248" e_stop="12019"/>
          <exon e_start="11921" e_stop="11758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTCTGAAGATTTTGGTACCGAGGGACGAGGAGGGTGAGGCTCATTACTCTGCCGCTGATACTTAAAAAGTAGTATTCTGTTGTAGTTGGATCTCAATCTTTCTGCTCTTTCTTCTCAGATACTTTGACCACTACGGGATCATCCGTGATATTATGCAAAATCATCTCCTTCAAATACTAGCATTGTTTGCTATGGAAACACCTGTCAGCTTGGATGCTGAGGACATCAGAAATGAAAAGGTATGCACATTTATGCCACAAATTATTCTCGTAAATCCTGCATTCCGTAAATCATCCAAGTGAATATGATTAAAACTAGAGGAAATATACTAAAACATGGTCCATGTGATTCAGGTTAAAGTTTTAAGGTCAATGAGGCCATTGCAACTTGAAGATATTGTTCTTGGACAGTATAAGGGTCATAGCAAGGGTGCTAAATCATACCCAGCTTACACAGATGATCCAACTGTGCCAAATGGCAGTATCACTCCAACATTTTCTGCTGCTGCACTCTTTATTGATAATGCACGTTGGGACGGGGTTCCTTTCCTCATGAAAGCAGGAAAAGCTCTCCATACAAAGAGGTCGCTAGATTGTTATTTCCTCCATAGTGATATATTTTCAGGTATATATCCTGATAACCACAAAATTATTGGAGATTTTGTTTTACTGGAACTGCAGGGCAGAGATCAGGGTCCAGTTCAGACATGTCCCCGGAAATTTGTACAAAAGGAACTTTGGAGCTGATATGGATAAGGCAACCAATGAGCTAGTTCTGCGTCTACAACCCGATGAAGCCATATATCTGAAAATTAACAACAAGGTTCCTGGTCTTGGAATGAGAC</genome_strand>
        <mrna_strand>ATATTTTCCGAAGATTTTGGTACCGAGGGACGAGGAGG.....................................................................................GTACTTTGACCACTACGGCTTTTTTCGTGATATTATGCAAAATCATCTCCTTCAAATATTAGCATTGTTTGCTATGGAAACACCTGTCAGCTTGGATGCTGAGGACATCAGAAATGAGAAG..................................................................................................................GTTAAAGTTTTAAGGTCAATGAGGCCATTGCAACTTGAAGATGTTGTTCTTGGACAGTATAAGGGTCATAGCAATGGTGCTAAATCATATCCAGCTTACACAGATGATCCAACTGTGCCAAATGGCAGTATCACTCCAACATTTTCTGCTGCTGCACTCTTCATTGATAATGCACGTTGGGACGGGGTTCCTTTCCTCATGAAAGCAGGAAAAGCTCTCCATACGAAGAG.................................................................................................GGCAGAGATCAGGGTCCAGTTCAGACATGTTCCCGGAAATTTGTACAAAAGGAACTTTGGAACTGACATGGATAAAGCAACCAATGAGCTAGTTCTGCGCCTACAACCTGATGAAGCCATATATCTGAAAATTAACAACAAGGTCCCTGGTCTTTGGATGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E460187" ref_strand="+" ref_description="SGN-E460187 	[cPRO-30-O13]">
      <seq>ttgagattgaacccttgttcttcatcttcagctgcaacttctccatcaactttccataatgggacaccatatttctgcaaaaagtttaactttttaccatttagaacccaacccctcaattgggtatctggaatttactcaagaatccaaccaagaaagcattttgaagtcttttcctcaaatgggtttccacttaatgctgtgtctgtgcaagatgtacaagtgcctttgacagagttaggaagtggagataccactgtcagcataactgttattggagcttcaggtgacctagccaagaagaagatttttccagctttatttgctcttttctacgaagattgtctgcctgagaattttgtagtttttggctactcacgaacaaaattgagtgatgaagagctgagaaatatgatcagtacaaccttaacttgtcgaattgataagagagagaattgcgatgccaaaatggagcattttctggaaagatgcttttatcattcgggtcagtacaattctgaggatgattttgcagaactggattacaaattaaaggaaaagganggttgtanggtttctaataggttgttttacttatcaatacctcaaatatattcgtggatgtggtgcgatgtgcaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="-" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="20773" stop="12635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20473" g_stop="20257" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20256" i_stop="15014" i_length="5243">
            <donor d_prob="0.912" d_score="0.98"/>
            <acceptor a_prob="0.871" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15013" g_stop="14877" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="354" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14876" i_stop="14731" i_length="146">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14730" g_stop="14636" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="449" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14635" i_stop="14543" i_length="93">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.352" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14542" g_stop="14428" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="564" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14427" i_stop="13014" i_length="1414">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13013" g_stop="12935" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="642" r_length="78" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="-" ref_id="SGN-E460187" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20473" e_stop="20257"/>
          <exon e_start="15013" e_stop="14877"/>
          <exon e_start="14730" e_stop="14636"/>
          <exon e_start="14542" e_stop="14428"/>
          <exon e_start="13013" e_stop="12935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGATTGAACCCTGTTTCTTCATCTTCAGCTGCACTTTCTCCTTCAACTTTACATAATGGAGCACCATATTTCTGCAAAAAGTTTAACTTTTTACCATTTAGAACCCAACCCCTCAATTGGGTATCTGGAATTTACTCAAGAATCCAACCAAGAAAGCATTTTGAAGTCTTTTCCTCAAATGGGTTTCCACTTAATGCAGTGTCTGTGCAAGATGGTGAGCTTGTTCTTCATTTGAAGGAAAAAAAAATGTGATCTTAACATTTTTCATGCTCAGTTTAACATTCTTTTCTAATGGTGTTACAAGTGTCTTCCTAGTGATTGATGTATTGCTTATCATATTTGATTGTGTAATTTGGTATACTATGGTTTTGTAGGTTCACTTACTTTGATACTTAACTTGCCCTGTACCCATAGCTGGAATTCTTGTTTTTTTTTATATGCTGGTTTAGTTGCTAGTCTTAGAATAGAAACAGTTTGAATTTAGTTTAAAATTAGTGGATGTATTCAAATTTCAAACTAAGCTATGTACTATACTAAAGTATCCCACAAGCTTAACTTCCTTGCCATTTGAATTGGATCCATAATTAAAGAGAAAAAGATAAAATAACAGTCATGATCTTTGTAGAATTGTAGTAAAAGATCTTTTTTTGAGGTTTTCGAAACCTCTTGTAGGTGTTCTTTTGCTTTTTGATTGTAGATTATAATGGATGATACTGAAATTTTTTAGTTCTAGATGATGGTTCACATTCATCCACGAATTAAGGTTTGTTCTTTACATCTTTTTCTGCTTCTATTTCCTTATCTGACGTGTACGTATTTATGTCGCTCAAAAATNCATCCGAACCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTCTGATGCACAAGTACAGAGCTAGTAGCTAATAGAGTTCCTCAAAAAGACTTTTTTTCTGCTGCTAAAATTCATCCTAATGCCAGTCATAACCAGTTACTTTCAACATTTCATTTATATGCACTGATCATACTTTTTCAGTAATATTATTTAATGCCATTTTATCTCTAATATTATTATATAATTATATACTATACTACAATCTATATACCTACACCTACTTATATATATAATTTATTGATCACGGGTTCCATTTGACCAAACTATATATAAAAATGCTCATTATCTTACAAAAATCATTATATTATCTTTAATACAAACATACATAATTACGCCTGACCAATTAAATACAAATCACCCAAAACCCCATTATTAATTTCATAATAATAATGTACCTTAGCTTAATTAACAACTCTTAGGGTGGGAGTTAACAATATTTCATATCGATTTATATAAATTTTAAATTCTGAATTCGTTTATTTTGTACATACAAGTAATTCATGTCATGTTATATACAACTTATTATTATATCAATAATATATTTTAAAATATCATAAGAAAGAAAAACGATGATTAGATATCATGAGAGCGTATAAAGTAATTTGAGAGGTGTGTGTACCTGGAAAAGATTTGAGAGTGCTTGAGCAGCAGCAAGACGATTAATGGAACTAGTAGTATTAATAGCCATTTGTGTAGCTAATGCCTCCAAGAATGGCTCTGGCCAAACACCATTATTTCCTCCACCTCTAAGACGTCTTCGTCCTCCTCCTCGTCCTCCTCCAACTTGTTCGGAAGTTGACATGATGAGAATTAGTATGATCAAAATTATATCACAAAAAGACCTCTTATTATAATTTGAAAATGAAAGTCAAATTGGTAATCGAGGTTCTGTTCCTGAACCCTAAACTTTAAACCCTATAGTAATCAACTGCGATTATAGAAAGTCGCAAAGAAGAATTTGATTGGAGAACATGGTTTGAACCATATTCACAAGAAGATGAGAAGAGAATATGGTTTATTACATTCTACATGAACCTTTTCAGGTGTTTTTGACATGTCCTTTATTTATCTAGTGACTTTATTAGGAGTTTGATAAGAAAGAAGTAATTTAAATACTATGTTTGATAAGGTAGATAAAAGAAAATATTAATACGATATTTGGTTGACAAGTTTATAAAAATATACACATAAAAGTATAAGTCACCAAAGAATCTATATATTATTTCTTCATTTAAAAAAGATATAATGATCTATTTTTCGTTTGCGTCATCTCTTTTAATAAAGAATAATTCATTTTCTTTTGTAACAAAATTTAGTTTTTAGTATTGGACGTGACATGTTTAGAGTAGTAATATTTGACATAATTTTAATTTCAGACGACAAGATTGGCTTTTTTAATTTTATTTTTTTAAACTTTATGTCAAATTAAACTAGTTCATTTTTTTTAAACGGATGAAGCATTATTTCATGTCAACACGTGTATAACTAATATTTTGTATAATTACTATATAAATTCTCTTGTAACTAATTTATATATTATTAATATCTATAAAACTCTTACCAGCTACCAAACGATACAATTTGGTCTTATTTTTTATTTTCATTTTGAAAAATGGAAAACCTTTATTTAGTTTTGTTTCAAATCGATTTTGTATTTTCTTTATTTGCTCTTTTGAGTGGTGTGTACTTATTATTTGACATGTTTGGAATTGCATGTGGGACAATATATTTTTCTTTACATGTACCAATGGAAAAAAACCACTTTTTTCGGTTCTTTTCCCTTTATTTTATTGCTTATATATATTATCAAAATGATAATTTAAAATTGGATTGATTTAAAGCTAAAGTTTTATTTAAATATATAGAAAAATATTATTAATACATGAATTGTTATGTTTAATTAGTTATACATACAATATATAATGTTGACTATGATGTATATTAAATATACATAGACTGAATTTTGTCTTGGGAAGGAAAACTAGTTTAGCTTATATCATGTTTATTATTTTCTTTGTCTCAATTTGTTTGTTTGATTTCGATTTGGAATGATGTTTAAGAAAATAATTTTTTTTAAAATTTTGTGGAGATTAACTAAAGACATGTTGAATGTACTGAAATATCTTATAATCTTATGATCTTAAATATATTATGTGAAAATTAGAATTAAAATGTTAACAAAAAACACTTTTTAAATAAAATAAAAAGTAAATTATGACAAATATATAGAAATGCAAGTTGTATAAAATTCAGCATACCCATTAGATATTAAGTTACACAGTCAAAACTCAGTATAAGATGTCACTCATTATAATAGCATTTCTCCCTAACGACTTGATTTTCTCTAAAATCAAATTTTCAAGTAATATTTTTCAATTTTTCAATAATAACATTCTACTTATATATATAACGTCACTAACATCCATTATAACAGATACTTTTTTTAAAAGACCATTACCTCTCTATAACATTATATACTTACTCAAATACACAATACTTTATGATAATCATTAATATCATGAATATAAAAAACATGAAATTTATAGATAAACACTATCTCTAAAACAAAAATATAAAAAGGAATATGGAAAATAATTAATCCAAAGAAATAACTCCAAAAAAACAACCAAATTAACCCGTAACCCACAAGGAAATGAAAAAATAACTCCTTGAACTCCCCTCTTTTTGAAACAAAAGTTAAAAAAAAGAATTTTTAAAAATAAAAAAAATAATTTAAAAAAAAAAATATCTTCCCTTAAAAAAAACTTTAACAAAAAGGGGAAAAGGAAAAAATAAACCGAAAAAATATAGGTTTAAAAAAACCCCCAGTGTATATTTTTAAAAAAAAACAAGAAAAAAAAAAACCAAAATATTCCCTTTTAAACATAAAAACCACAAAAACTTCAAAAAAAAAACACCCCTCCCCCCCCCAAGGGCCCCCTAAAACCCCCCCCAAAACCCCCCCAGGGGGGCCCCCAAAACCCCCCCCCCCCCCGGGGGTTCTTCCTCTCGCCCCCCCAGAGAGGGGGGCGGGTGCCCCTCCTCCCAGAGGGAGGGGGCCCCCCAAAAAAAAAAAAACACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGGGAGTAACTGAGCACGTAAGGTGGATGTGCCCGAGCAGCTGAGGGGAGGGAAGAGTTGCCCAAATGTTTTAGGAGTGCGCAAAAATTTTTGGAAATAATTAGAGAGGGGTGGGGGGGAAGGACTGTGGGATTTTGGATTCGGGAATACCCCGTGGAAAAAGAAAAAAGTGAGAATTTTTAGGGGGGGTAAAAAACACCGTGGATTATGGGCAAACAACCAGGGTTGTGGCTTTGTTCAAAGTTTAGAGAAAGACGTTTGACCAAATGGATTTAAGATTTCAAATTGCTTTGAGGGGTCAAAGACTATTGTTCAATCCACCGATATGGTTTCTCCGCAAGATGGGAGTCCTTGTGATTATAAATGTCCGTATCAGATAGTGCTGTCGGATGCGAACTCGGTTAACATGACGAGACATGCCAGAAGGACCAAGATATCTATTACATAAGAAAGAAGTTTACTCCATACAAGTATCGATACACTATGTTAGAGAGAACGTGTTGTGCTTTGACTTCACTTTCCCAGAAGTTGAGACATTATATGTCTTCTTATACTACAAACCTCATTTCTAGAATGGACCCGGTGAAGTATATCTTCCAGAAGGCGATGCCGACCGGAAAATTAGCTAAGTGGCTAATGTTTTTAAGTGAGTTTGATATTGTGTATGTGACTCAGAAGGTGATTAAGGAACATGCTTTGGCTGATCATCTTGCAAAAGTTCCCGTAGATGAAGAGTATGAACCACTTAAGACTTATTTTCACGATGAAGAAGTGTCATTTGTGAGTGAAGATATTTCTAAAGCATATCCAGGTTGGAAACTATTCTTTGATGGGGTGGCAAATCATAAAGGTAAAGGTATTGGAGAAGTCTTAGTGTCAGAGTCTGGTCAACACTATCCCATGGCTGCTAAACTCCAATTTAATTGCACAAATAACATGGCTGAATATGAAGCTTGCATTCTTGGTTTTAAAATGGCCATCGACATGAACATCTAAGAGTTATTGGTTATCAGCGATTCAGATCTGTTGATACATCAAGTTCAAGGAGAAAGGACCGTGAAGAACCTGAGGATTATACCTTACATGCGGTATGTACAGATGTTGTGCCAAAGATTTGGCGAGATCGAGTTCAGACATACTCCCAGAATACTAAATGAGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTATTTCCTTATCTGACGTGTACGTATTTATGTTCGGCTTCAAAATCAATGCCAGAACAAGTGCCTTTGACAGAGTTAGGAAGTGGAGAGACCACTGTCAGCATAACTGTTATTGGAGCTTCAGGTGATCTAGCCAAGAAGAAGATTTTTCCAGCTTTATTTGCTCTTTTCTATGAAGATTGTCTGCCTGAGGTTAAATTTCATATCTCTAACTGTATATTGTTATCTACTAATCATGCACAAAAACAACTTGAGCTTAGGTTAATTAGCAGACACATTTTAACCATCCTGGAAGATTCAGCAGTAGCTCATGATGTGTCTTTATTTGTACATTTCAGAATTTTGTAGTTTTTGGCTACTCACGAACAAAATTGAGTGATGAAGAGCTGAGAAACATGATCAGTACAACCTTAACTTGTCGAATTGATAAGAGGTATACCATTATGTGAAATTACTTTTAACATGCAATATTTTCATGTTTATGATTTATGAAGCTGATGGAATCCATGTGAATGAGGGTTTGCAGAGAGAATTGTGATGCCAAAATGGAGCATTTTCTGGAAAGATGTTTTTATCATTCCGGTCAGTACAATTCTGAGGATGATTTTGCAGAACTGGATTACAAATTAAAGGAAAAGGAGGTAATGCATGTGCTGTACTTATTTCTGCCCATTACTAAGCATTGCCGGAACATATATACCTGAATGAGCATAAACGTGACACTTCTCATATGAACTTCCAATAACTCGGGGTGATAAAGATATGGAAGTACTAATGAGATAACTTTATGTGGAAGCTTGTGCACTGTCTGCAGTCCATTTTTGCATGTCTAAAGAAACTATAGCAGTAAATTAGATGTCATCTTCTTAGCTGTATCAATAACCATCATCTTTATTAGTTTAATATTTTTCTCAAACCTTGAAGGCAACTTCCTGTTGCTCCAAGGAGTAAGGTACATAAATCTCAGATAAGAGATGTAACATATTATAGGCATGATGTGCATTAGTGGTTTCTCTGATGTTTAAAATATTTTTGGCAAGATATTCGAAGAGATTATCTTGGCGCCGTGAAGTTTTAGTTAAGTAGCCTTTCAGGTAAAGATGGTCAGGTTGACATAGATATCATTCTGCAATGATGTTATGGCATAAGCCCGAAGAAGATTTATGATGACATAGTGTCTCAATGTAAGGTGATTATATGAAGGATTCTTAATGGTTTGATGCTAGTCAACTAAGTAGGAGATTACAGAAGACTGAAAATACATGGGTCAAATGAAAGCTCCATTGATGCATATACAAAATTTGATTTTGGAGGAAAAATAGGATAGTTTTTTATCGAACTTCATAAAGGTCTGAACTATGGGAAATATTTAAAAATAAAACTAAAGGGAAATATGTATATAATATACCTACATATGTACGACATAAAAAAATTCAGACCTTACTTTCCTTGGTTGATTGATCCTACTTTGATCAACCCCTACAATACTTTTAAGCTGAGGAATCCAGAATTTTCCAGAATGAGACTCCTATTACTATCTCCATCTAAAGCAGTGACAAGAGAGTTACAGGGGAACTTCCACAACTTCTCTTTGTTCAATATGCTAATCAACTATTTGTATAAGTTACTCCATTTGCATATTAGATGATAAATAAGAATAAGTATTTGTTGTTCATAGCTTTTGCATATTATGTCATACATGTACGCACTTCTCTTGAAGCATACTTAGAGAAGCGGAGAGCTGGTTATGTGTTACTTATACTTTATTATGGACTGCAAATCTTAAAAGTTTGGCAGGATAATGTATTTTTCTAATTATAATTTTATGAACAGTTACCTAGCCTCTCAATTTAGATGAAATGATAGACCAAAAGAAAGAACCCCAAGTATACATAGTATACTTAATGTTTCTTGGGGTTTGAGTGGCAAAAGTTAGTCTCTGCTTGATGCAGTTTATGCCACATTTTACTGCTCTTTACTTAACAATGCTAAGCTATGTTACTGATGAATGATAAAAAGCTGATTGTGAGTGCTGATCATATGATTACATTCTAGGGTTGTAGGATTTCTAATAGGTTGTTTTACTTATCAATACCTCCAAATATATTCGTGGATGTGGTGAGATGTGCAAGTC</genome_strand>
        <mrna_strand>TTGAGATTGAACCCTTGTTCTTCATCTTCAGCTGCAACTTCTCCATCAACTTTCCATAATGGGACACCATATTTCTGCAAAAAGTTTAACTTTTTACCATTTAGAACCCAACCCCTCAATTGGGTATCTGGAATTTACTCAAGAATCCAACCAAGAAAGCATTTTGAAGTCTTTTCCTCAAATGGGTTTCCACTTAATGCTGTGTCTGTGCAAGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGTGCCTTTGACAGAGTTAGGAAGTGGAGATACCACTGTCAGCATAACTGTTATTGGAGCTTCAGGTGACCTAGCCAAGAAGAAGATTTTTCCAGCTTTATTTGCTCTTTTCTACGAAGATTGTCTGCCTGAG..................................................................................................................................................AATTTTGTAGTTTTTGGCTACTCACGAACAAAATTGAGTGATGAAGAGCTGAGAAATATGATCAGTACAACCTTAACTTGTCGAATTGATAAGAG.............................................................................................AGAGAATTGCGATGCCAAAATGGAGCATTTTCTGGAAAGATGCTTTTATCATTCGGGTCAGTACAATTCTGAGGATGATTTTGCAGAACTGGATTACAAATTAAAGGAAAAGGAN......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTANGGTTTCTAATAGGTTGTTTTACTTATCAATACCT-CAAATATATTCGTGGATGTGGTGCGATGTGCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 	[LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28226" stop="29003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28526" g_stop="28702" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28526" e_stop="28702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCGAATGGAGCCATATAAATACTTGAGTGATAGTTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGACCGCCAAATTCTATCACCCATGCACGAAGCATATACTCTAACACTTGAATTGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 	[TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29707" stop="31019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30007" g_stop="30719" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30007" e_stop="30719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGATGGTAGTAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGAATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATATCCAATACAATTCTCAGGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCATTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAATTGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATAGATACCTTGTTCAACTGCTGGTAGTTTATGCACATCCGAAAACTCTCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGAAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTCAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 	[TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29707" stop="30902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30007" g_stop="30602" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30007" e_stop="30602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGATGGTAGTAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGAATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATATCCAATACAATTCTCAGGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCATTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAATTGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATAGATACCTTGTTCAACTGCTGGTAGTTTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 	[cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29707" stop="30832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30007" g_stop="30532" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30007" e_stop="30532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGATGGTAGTAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGAATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATATCCAATACAATTCTCAGGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCATTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAATTGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 	[TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29778" stop="31056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30078" g_stop="30757" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30078" e_stop="30757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGAATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATATCCAATACAATTCTCAGGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCATTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAATTGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATAGATACCTTGTTCAACTGCTGGTAGTTTATGCACATCCGAAAACTCTCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGAAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTCAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 	[cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29778" stop="30736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30078" g_stop="30436" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30078" e_stop="30436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGAATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATATCCAATACAATTCTCAGGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCATTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 	[cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="30296" stop="31657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30596" g_stop="31357" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30596" e_stop="31357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCTCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGAAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTCAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCTCTATCCGGTGGCATACCCGGAAGGTCTGCAGGAAACACATCTAAAAACTCATGAACTATCGAAACCGACTCAATTGTAGGTACTTGGGTAGTATCATCCCTGAGATGTACCAAGAACGCTAAACAACCCTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGAACTGGAGTGGAAGTGTAGTCGCCCTCCCACACTAACGGATCTGCCCCAGGCTTGGCTAACGTCACAGTTTTAGCGTTACAATCCAAGATCGCAAAATTCGGAGAAAGTCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAGGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACTTACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGTACATTAGCAAATGAGGAAGATACATAATAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTATGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 	[cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="30296" stop="31556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30596" g_stop="31256" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30596" e_stop="31256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCTCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGAAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTCAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCTCTATCCGGTGGCATACCCGGAAGGTCTGCAGGAAACACATCTAAAAACTCATGAACTATCGAAACCGACTCAATTGTAGGTACTTGGGTAGTATCATCCCTGAGATGTACCAAGAACGCTAAACAACCCTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGAACTGGAGTGGAAGTGTAGTCGCCCTCCCACACTAACGGATCTGCCCCAGGCTTGGCTAACGTCACAGTTTTAGCGTTACAATCCAAGATCGCAAAATTCGGAGAAAGTCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAGGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACTTACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGTACATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 	[cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="-" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="32326" stop="30315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32026" g_stop="31854" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31853" i_stop="31107" i_length="747">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31106" g_stop="30629" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="651" r_length="478" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32026" e_stop="31854"/>
          <exon e_start="31106" e_stop="30629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATTTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCATTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTGCAGGTAGCGGCTACGGCAAAATCCTTTCAAGAAGTAGTAGACTTCGTGATAGAGGTGGAAGGAGTGAAGCTAGATGACTTCACCATGGCATCGACATAAAAGAGGTTTTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACTGGTCAACACTTCTATGAGAGACCCATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATAACTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGCCGAGGTAATGGTAGTCACCAAAACGGCCGGGGTGACGGACAAATGGGAACTACTGCAGCGCAACATGGTAGGGGCAACGGGCAGACAGGTGATAGGGCCCATTGTTATGCTTTCCCTGGGAGATCTGAAGCGGAGACATCTGATGCTGTCATCATAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTATTATGTATCTTCCTCATTTGCTAATGTACTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTAAGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTGGTCTGGTGACTTTTGTGGGGAGCAATACCTATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGACTTTCTCCGAATTTTGCGATCTTGGATTGTAACGCTAAAACTGTGACGTTAGCCAAGCCTGGGGCAGATCCGTTAGTGTGGGAGGGCGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGTACATCTCAGGGATGATACTACCCAAGTACCTACAATTGAGTCGGTTTCGATAGTTCATGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCGGGTATGCCACCGGATAGAGATATTGACTTCTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTGAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTTCTTGGGGTGCTCCGGT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 	[cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="30699" stop="31629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30999" g_stop="31329" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30999" e_stop="31329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGCCCCAGGCTTGGCTAACGTCACAGTTTTAGCGTTACAATCCAAGATCGCAAAATTCGGAGAAAGTCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAGGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACTTACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGTACATTAGCAAATGAGGAAGATACATAATAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 	[cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="-" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="32942" stop="31800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32643" g_stop="32100" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32643" e_stop="32100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTAATCTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTACACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGACACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAA---C----CT---AGGGTGCTGAATCTAAGGATGCCTATGATTTTCTGATTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 	[cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="-" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="33302" stop="32417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33002" g_stop="32717" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33002" e_stop="32717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAACTTCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTTACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGATGCATCTGAGCCAGCCACTGAGACTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E319995" ref_strand="+" ref_description="SGN-E319995 	[cTOB-31-G9]">
      <seq>aaaaaaaaaaaaaatcccaaacacttctcaagaaaactctaaaaaagtttttttttttttccaatttcaagaaaatggaaaatatgagcttgaatagccaattttattttctaaaaaatgcaatgagaattctacttccactttcagtattttcattgatgttttctcaatattatttaatatttccatctctttttaattcatttaatgaattttcttctaatttttctattcaacttttcacctatagctcagaaagaaactatatttttcttctttgtaatggaattcttgttttcataatcaagaattcaggactaattagtactactaatatttctgataatcatcatcatcattatcccaaagaatccaaaattcaagaaacaaatatagagtctcttgaaaaagttgttgaaattgaaaaacaagaaaaagaagaagaaattgaaacaatgaatattcaagatgatttggttagtgttgaaactattgatgagaatgaagtttatcaagaatccgaagatagtaagctttttcttcagaataatcaattagattatcattctgtgcgttgtgttgaagttattgaagaatttgaagaagtggaagaatttgaagaagaagaaacattagaagagttacacaagaagtgtgatgattttataaagaggattaagaaagagatcaatagaaagaattgattgatggaaaaaaaaaaataaccaataagggggttagcatcttgctatgacatataattaaccatgtattcactccttttttactagtcgaatttgatatctatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="38001" stop="39411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38301" g_stop="39111" g_length="811"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="811" r_length="811" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E319995" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38301" e_stop="39111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAAATCCCAAACACTTCTCAAGAAAACTCTAAAAAAG-TTTTTTTTTTTTCCAATTTCAAGAAAATGGAAAATATGAGCTTGAATAGCCAATTTTATTTTCTAAAAAATGCAATGAGAATTCTACTTCCACTTTCAGTATTTTCATTGATGTTTTCTCAATATTATTTAATATTTCCATCTCTTTTTAATTCATTTAATGAATTTTCTTCTAATTTTTCTATTCAACTTTTCACCTATAGCTCAGAAAGAAACTATATTTTTCTTCTTTGTAATGGAATTCTTGTTTTCATAATCAAGAATTCAGGACTAATTAGTACTACTAATATTTCTGATAATCATCATCATCATTATCCCAAAGAATCCAAAATTCAAGAAACAAATATAGAGTCTCTTGAAAAAGTTGTTGAAATTGAAAAACAAGAAAAAGAAGAAGAAATTGAAACAATGAATATTCAAGATGATTTGGTTAGTGTTGAAACTATTGATGAGAATGAAGTTTATCAAGAATCCGAAGATAGTAAGCTTTTTCTTCAGAATAATCAATTAGATTATCATTCTGTGCGTTGTGTTGAAGTTATTGAAGAATTTGAAGAAGTGGAAGAATTTGAAGAAGAAGAAACATTAGAAGAGTTACACAAGAAGTGTGATGATTTTATAAAGAGGATTAAGAAAGAGATCAATAGAAAGAATTGATTGATGGAAAAAAAAAATTAACCAATAAGGGGGTTAGCATCTTGCTATGACATATAATTAACCATGTATTCACTCCTTTTTAACTAGTCGATATTTGATATCTATTTT</genome_strand>
        <mrna_strand>AAAAAAAAAAAAAATCCCAAACACTTCTCAAGAAAACTCTAAAAAAGTTTTTTTTTTTTTCCAATTTCAAGAAAATGGAAAATATGAGCTTGAATAGCCAATTTTATTTTCTAAAAAATGCAATGAGAATTCTACTTCCACTTTCAGTATTTTCATTGATGTTTTCTCAATATTATTTAATATTTCCATCTCTTTTTAATTCATTTAATGAATTTTCTTCTAATTTTTCTATTCAACTTTTCACCTATAGCTCAGAAAGAAACTATATTTTTCTTCTTTGTAATGGAATTCTTGTTTTCATAATCAAGAATTCAGGACTAATTAGTACTACTAATATTTCTGATAATCATCATCATCATTATCCCAAAGAATCCAAAATTCAAGAAACAAATATAGAGTCTCTTGAAAAAGTTGTTGAAATTGAAAAACAAGAAAAAGAAGAAGAAATTGAAACAATGAATATTCAAGATGATTTGGTTAGTGTTGAAACTATTGATGAGAATGAAGTTTATCAAGAATCCGAAGATAGTAAGCTTTTTCTTCAGAATAATCAATTAGATTATCATTCTGTGCGTTGTGTTGAAGTTATTGAAGAATTTGAAGAAGTGGAAGAATTTGAAGAAGAAGAAACATTAGAAGAGTTACACAAGAAGTGTGATGATTTTATAAAGAGGATTAAGAAAGAGATCAATAGAAAGAATTGATTGATGGAAAAAAAAAAATAACCAATAAGGGGGTTAGCATCTTGCTATGACATATAATTAACCATGTATTCACTCCTTTTTTACTAGTCGA-ATTTGATATCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E427283" ref_strand="+" ref_description="SGN-E427283 	[STM-48-K9]">
      <seq>aaaaaacttgaactttttttgtttttcattttcaagaaaatggaaaatatgagcttgaatagccaagtctattttctaaaaaatgcaatgaaaattcttcttccagtttcagtattttcattgatgttttctcaatcttatttattacttccttttctcaactcatttaatgaattttcttcttatttttctattcaacttttcacctatagctcagaaagaaactatatttttcttctttgtaatggaattcttgttttcataatcaagaattcagggctaattagtactactaatatttctgataatcatcatcattatcccaaagaatccaaaattcaagaaacaaagatagagtttcttgaaaaagttgttgaaattggaaaacaagaaaaagaagaagaaattgaaacaatgaatcaagatgatttggttagtgttgaaacaattgatgagaatgaaggttatcaagaaccggaagatagtaggccctttcttcagaataatcaattaggttatcattctgcgcattatgttgaagttattgaagaattggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="38045" stop="39202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38333" g_stop="38902" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E427283" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38333" e_stop="38902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCTAAAAAAGTTTTTTTTTTTTCCAATTTCAAGAAAATGGAAAATATGAGCTTGAATAGCCAATTTTATTTTCTAAAAAATGCAATGAGAATTCTACTTCCACTTTCAGTATTTTCATTGATGTTTTCTCAATATTATTTAATATTTCCATCTCTTTTTAATTCATTTAATGAATTTTCTTCTAATTTTTCTATTCAACTTTTCACCTATAGCTCAGAAAGAAACTATATTTTTCTTCTTTGTAATGGAATTCTTGTTTTCATAATCAAGAATTCAGGACTAATTAGTACTACTAATATTTCTGATAATCATCATCATCATTATCCCAAAGAATCCAAAATTCAAGAAACAAATATAGAGTCTCTTGAAAAAGTTGTTGAAATTGAAAAACAAGAAAAAGAAGAAGAAATTGAAACAATGAATATTCAAGATGATTTGGTTAGTGTTGAAACTATTGATGAGAATGAAGTTTATCAAGAATCCGAAGATAGTAAGCTTTTTCTTCAGAATAATCAATTAGATTATCATTCTGTGCGTTGTGTTGAAGTTATTGAAGAATTTGAAG</genome_strand>
        <mrna_strand>AAAAAACTTGAAC-TTTTTTTGTTTTT-CATTTTCAAGAAAATGGAAAATATGAGCTTGAATAGCCAAGTCTATTTTCTAAAAAATGCAATGAAAATTCTTCTTCCAGTTTCAGTATTTTCATTGATGTTTTCTCAATCTTATTTATTACTTCC-T-T-TTCTCAACTCATTTAATGAATTTTCTTCTTATTTTTCTATTCAACTTTTCACCTATAGCTCAGAAAGAAACTATATTTTTCTTCTTTGTAATGGAATTCTTGTTTTCATAATCAAGAATTCAGGGCTAATTAGTACTACTAATATTTCTGAT-A--ATCATCATCATTATCCCAAAGAATCCAAAATTCAAGAAACAAAGATAGAGTTTCTTGAAAAAGTTGTTGAAATTGGAAAACAAGAAAAAGAAGAAGAAATTGAAACAATG-A-A-TCAAGATGATTTGGTTAGTGTTGAAACAATTGATGAGAATGAAGGTTATCAAGAACCGGAAGATAGTAGGCCCTTTCTTCAGAATAATCAATTAGGTTATCATTCTGCGCATTATGTTGAAGTTATTGAAGAATTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E485915" ref_strand="+" ref_description="SGN-E485915 	[cSTE-20-I7]">
      <seq>aaaaaacttgaactttttttgtttttcattttcaagaaaatggaaaatatgagcttgaatagccaagtctattttctaaaaaatgcaatgaaaattcttcttccagtttcagtattttcattgatgttttctcaatcttatttattacttccttttctcaactcatttaatgaattttcttcttatttttctattcaacttttcacctatagctcagaaagaaactatatttttcttctttgtaatggaattcttgttttcataatcaagaattcagggctaattagtactactaatatttctgataatcatcatcattatcccaaagaatccaaaattcaagaaacaaagatagagtttcttgaaaaagttgttgaaattggaaaacaagaaaaagaagaagaaattgaaacaatgaatcaagatgatttggttagtgttgaaacaattgatgagaatgaaggttatcaagaaccggaagatagtaggccctttcttcagaatatcaattaggttatcattctgcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="38045" stop="39172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38333" g_stop="38873" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E485915" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38333" e_stop="38873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCTAAAAAAGTTTTTTTTTTTTCCAATTTCAAGAAAATGGAAAATATGAGCTTGAATAGCCAATTTTATTTTCTAAAAAATGCAATGAGAATTCTACTTCCACTTTCAGTATTTTCATTGATGTTTTCTCAATATTATTTAATATTTCCATCTCTTTTTAATTCATTTAATGAATTTTCTTCTAATTTTTCTATTCAACTTTTCACCTATAGCTCAGAAAGAAACTATATTTTTCTTCTTTGTAATGGAATTCTTGTTTTCATAATCAAGAATTCAGGACTAATTAGTACTACTAATATTTCTGATAATCATCATCATCATTATCCCAAAGAATCCAAAATTCAAGAAACAAATATAGAGTCTCTTGAAAAAGTTGTTGAAATTGAAAAACAAGAAAAAGAAGAAGAAATTGAAACAATGAATATTCAAGATGATTTGGTTAGTGTTGAAACTATTGATGAGAATGAAGTTTATCAAGAATCCGAAGATAGTAAGCTTTTTCTTCAGAATAATCAATTAGATTATCATTCTGTGCG</genome_strand>
        <mrna_strand>AAAAAACTTGAAC-TTTTTTTGTTTTT-CATTTTCAAGAAAATGGAAAATATGAGCTTGAATAGCCAAGTCTATTTTCTAAAAAATGCAATGAAAATTCTTCTTCCAGTTTCAGTATTTTCATTGATGTTTTCTCAATCTTATTTATTACTTCC-T-T-TTCTCAACTCATTTAATGAATTTTCTTCTTATTTTTCTATTCAACTTTTCACCTATAGCTCAGAAAGAAACTATATTTTTCTTCTTTGTAATGGAATTCTTGTTTTCATAATCAAGAATTCAGGGCTAATTAGTACTACTAATATTTCTGAT-A--ATCATCATCATTATCCCAAAGAATCCAAAATTCAAGAAACAAAGATAGAGTTTCTTGAAAAAGTTGTTGAAATTGGAAAACAAGAAAAAGAAGAAGAAATTGAAACAATG-A-A-TCAAGATGATTTGGTTAGTGTTGAAACAATTGATGAGAATGAAGGTTATCAAGAACCGGAAGATAGTAGGCCCTTTCTTCAGAAT-ATCAATTAGGTTATCATTCTGCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E550809" ref_strand="+" ref_description="SGN-E550809 	[TUS-50-M22]">
      <seq>aaaaagttttttttttttccaatttcaagaaaatggaaaatatgagcttgaatagccaattttattttctaaaaaatgcaatgagaattctacttccactttcagtattttcattgatgttttctcaatattatttaatatttccatctctttttaattcatttaatgaattttcttctaatttttctattcaacttttcacctatagctcaaaaagaaactatatttttcttctttgtaagggaattcttgttttcataatcaagaattcaggactaattagtactactaatatttctgataatcatcatcatcattatcccaaagaatccaaaattcaagaaacaaatatagagtctcttgaaaaagttgttgaaattgaaaaacaagaaaaagaagaagaaattgaaacaatgaatattcaagatgatttggttagtgttgaaactattgatgagaatgaagtttatcaagaatccgaagatagtaagctttttcttcagaataatcaattagattatcattctgtgcgttgtgttgaagttattgaagaatttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="38042" stop="39201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38342" g_stop="38901" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E550809" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38342" e_stop="38901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTTTTTTTTTTTCCAATTTCAAGAAAATGGAAAATATGAGCTTGAATAGCCAATTTTATTTTCTAAAAAATGCAATGAGAATTCTACTTCCACTTTCAGTATTTTCATTGATGTTTTCTCAATATTATTTAATATTTCCATCTCTTTTTAATTCATTTAATGAATTTTCTTCTAATTTTTCTATTCAACTTTTCACCTATAGCTCAGAAAGAAACTATATTTTTCTTCTTTGTAATGGAATTCTTGTTTTCATAATCAAGAATTCAGGACTAATTAGTACTACTAATATTTCTGATAATCATCATCATCATTATCCCAAAGAATCCAAAATTCAAGAAACAAATATAGAGTCTCTTGAAAAAGTTGTTGAAATTGAAAAACAAGAAAAAGAAGAAGAAATTGAAACAATGAATATTCAAGATGATTTGGTTAGTGTTGAAACTATTGATGAGAATGAAGTTTATCAAGAATCCGAAGATAGTAAGCTTTTTCTTCAGAATAATCAATTAGATTATCATTCTGTGCGTTGTGTTGAAGTTATTGAAGAATTTGAA</genome_strand>
        <mrna_strand>AAAAAGTTTTTTTTTTTTCCAATTTCAAGAAAATGGAAAATATGAGCTTGAATAGCCAATTTTATTTTCTAAAAAATGCAATGAGAATTCTACTTCCACTTTCAGTATTTTCATTGATGTTTTCTCAATATTATTTAATATTTCCATCTCTTTTTAATTCATTTAATGAATTTTCTTCTAATTTTTCTATTCAACTTTTCACCTATAGCTCAAAAAGAAACTATATTTTTCTTCTTTGTAAGGGAATTCTTGTTTTCATAATCAAGAATTCAGGACTAATTAGTACTACTAATATTTCTGATAATCATCATCATCATTATCCCAAAGAATCCAAAATTCAAGAAACAAATATAGAGTCTCTTGAAAAAGTTGTTGAAATTGAAAAACAAGAAAAAGAAGAAGAAATTGAAACAATGAATATTCAAGATGATTTGGTTAGTGTTGAAACTATTGATGAGAATGAAGTTTATCAAGAATCCGAAGATAGTAAGCTTTTTCTTCAGAATAATCAATTAGATTATCATTCTGTGCGTTGTGTTGAAGTTATTGAAGAATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E211840" ref_strand="+" ref_description="SGN-E211840 	[cLEC-66-F2]">
      <seq>aaaagttttttttttttccaatttcaagaaaatggaaaatatgagcttgaatagccaattttattttctaaaaaatgcaatgagaattctacttccactttcagtattttcattgatgttttctcaatattatttaatatttccatctctttttaattcatttaatgaattttcttctaatttttctattcaacttttcacctatagctcagaaagaaactatatttttcttctttgtaatggaattcttgttttcataatcaagaattcaggactaattagtactactaatatttctgataatcatcatcatcattatcccaaagaatccaaaattcaagaaacaaatatagagtctcttgaaaaagttgttgaaattgaaaaacaagaaaaagaagaagaaattgaaacaatgaatattcaagatgatttggttagtgttgaaactattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="38043" stop="39097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38343" g_stop="38797" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E211840" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38343" e_stop="38797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTTTTTTTTTTCCAATTTCAAGAAAATGGAAAATATGAGCTTGAATAGCCAATTTTATTTTCTAAAAAATGCAATGAGAATTCTACTTCCACTTTCAGTATTTTCATTGATGTTTTCTCAATATTATTTAATATTTCCATCTCTTTTTAATTCATTTAATGAATTTTCTTCTAATTTTTCTATTCAACTTTTCACCTATAGCTCAGAAAGAAACTATATTTTTCTTCTTTGTAATGGAATTCTTGTTTTCATAATCAAGAATTCAGGACTAATTAGTACTACTAATATTTCTGATAATCATCATCATCATTATCCCAAAGAATCCAAAATTCAAGAAACAAATATAGAGTCTCTTGAAAAAGTTGTTGAAATTGAAAAACAAGAAAAAGAAGAAGAAATTGAAACAATGAATATTCAAGATGATTTGGTTAGTGTTGAAACTATTGATG</genome_strand>
        <mrna_strand>AAAAGTTTTTTTTTTTTCCAATTTCAAGAAAATGGAAAATATGAGCTTGAATAGCCAATTTTATTTTCTAAAAAATGCAATGAGAATTCTACTTCCACTTTCAGTATTTTCATTGATGTTTTCTCAATATTATTTAATATTTCCATCTCTTTTTAATTCATTTAATGAATTTTCTTCTAATTTTTCTATTCAACTTTTCACCTATAGCTCAGAAAGAAACTATATTTTTCTTCTTTGTAATGGAATTCTTGTTTTCATAATCAAGAATTCAGGACTAATTAGTACTACTAATATTTCTGATAATCATCATCATCATTATCCCAAAGAATCCAAAATTCAAGAAACAAATATAGAGTCTCTTGAAAAAGTTGTTGAAATTGAAAAACAAGAAAAAGAAGAAGAAATTGAAACAATGAATATTCAAGATGATTTGGTTAGTGTTGAAACTATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BhkxeI/sgn_ests_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 	[cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-nrTuv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0021D10.1" temp_strand="+" temp_description="C07SLm0021D10.1  AC212649.1 htgs_phase:1 submitted_to_sgn_as:gi|159145076|gb|AC212649.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="50123" stop="51023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50423" g_stop="50723" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.1" gen_strand="+" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50423" e_stop="50723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATATGGCAGGAAACCATTCGCCTGGTACTGTCACTCGTCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTACCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGACTCAAGCAAACCCCCCGTGCGTGGTACACACGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="12622" PGL_stop="10814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12622" e_stop="12569"/>
            <exon e_start="12483" e_stop="12363"/>
            <exon e_start="12248" e_stop="12019"/>
            <exon e_start="11921" e_stop="11721"/>
            <exon e_start="10936" e_stop="10814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.724" acc_prob="0.994" e_score="0.981"/>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="0.967"/>
          <exon-intron don_prob="0.859" acc_prob="0.985" e_score="0.978"/>
          <exon-intron don_prob="0.945" acc_prob="0.990" e_score="0.958"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="12622" e_stop="12569" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.724" acc_prob="0.994">
            <gDNA_intron_boundary i_start="12568" i_stop="12484" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="12483" e_stop="12363" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="12362" i_stop="12249" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="12248" e_stop="12019" e_length="230"/>
          </exon>
          <intron i_serial="3" don_prob="0.859" acc_prob="0.985">
            <gDNA_intron_boundary i_start="12018" i_stop="11922" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="0.958">
            <gDNA_exon_boundary e_start="11921" e_stop="11721" e_length="201"/>
          </exon>
          <intron i_serial="4" don_prob="0.945" acc_prob="0.990">
            <gDNA_intron_boundary i_start="11720" i_stop="10937" i_length="784"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="10936" e_stop="10814" e_length="123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12622" stop="12569"/>
              <exon start="12483" stop="12363"/>
              <exon start="12248" stop="12019"/>
              <exon start="11921" stop="11721"/>
              <exon start="10936" stop="10814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12622" stop="12569"/>
              <exon start="12483" stop="12363"/>
              <exon start="12248" stop="12019"/>
              <exon start="11921" stop="11732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12606" stop="12569"/>
              <exon start="12483" stop="12363"/>
              <exon start="12248" stop="12019"/>
              <exon start="11921" stop="11758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGCAATGTCCAATTTATATTTTCTGAAGATTTTGGTACCGAGGGACGAGGAGG : ATACTTTGACCACTACGGGATCATCCGTGATATTATGCAAAATCATCTCCTTCAAATACTAGCATTGTTTGCTATGGAAACACCTGTCAGCTTGGATGCTGAGGACATCAGAAATGAAAAG : GTTAAAGTTTTAAGGTCAATGAGGCCATTGCAACTTGAAGATATTGTTCTTGGACAGTATAAGGGTCATAGCAAGGGTGCTAAATCATACCCAGCTTACACAGATGATCCAACTGTGCCAAATGGCAGTATCACTCCAACATTTTCTGCTGCTGCACTCTTTATTGATAATGCACGTTGGGACGGGGTTCCTTTCCTCATGAAAGCAGGAAAAGCTCTCCATACAAAGAG : GGCAGAGATCAGGGTCCAGTTCAGACATGTCCCCGGAAATTTGTACAAAAGGAACTTTGGAGCTGATATGGATAAGGCAACCAATGAGCTAGTTCTGCGTCTACAACCCGATGAAGCCATATATCTGAAAATTAACAACAAGGTTCCTGGTCTTGGAATGAGACTTGACCGGAGTGACCTTAATCTTCTTTACAAAGCAAA : GTATCGAGGTGAAATACCAGATGCATATGAGCGGCTTTTGTTAGATGCAATAGAAGGAGAGCGAAGATTGTTCATAAGAAGCGATGAACTTGATGCTGCATGGGCTCTATTTACGCCGTTGTT</gDNA_template>
            <first_frame> P  Q  C  P  I  Y  I  F  *  R  F  W  Y  R  G  T  R  R  :  I  L  *  P  L  R  D  H  P  *  Y  Y  A  K  S  S  P  S  N  T  S  I  V  C  Y  G  N  T  C  Q  L  G  C  *  G  H  Q  K  *  K   : G  *  S  F  K  V  N  E  A  I  A  T  *  R  Y  C  S  W  T  V  *  G  S  *  Q  G  C  *  I  I  P  S  L  H  R  *  S  N  C  A  K  W  Q  Y  H  S  N  I  F  C  C  C  T  L  Y  *  *  C  T  L  G  R  G  S  F  P  H  E  S  R  K  S  S  P  Y  K  E  :  G  R  D  Q  G  P  V  Q  T  C  P  R  K  F  V  Q  K  E  L  W  S  *  Y  G  *  G  N  Q  *  A  S  S  A  S  T  T  R  *  S  H  I  S  E  N  *  Q  Q  G  S  W  S  W  N  E  T  *  P  E  *  P  *  S  S  L  Q  S  K  :  V  S  R  *  N  T  R  C  I  *  A  A  F  V  R  C  N  R  R  R  A  K  I  V  H  K  K  R  *  T  *  C  C  M  G  S  I  Y  A  V  V </first_frame>
            <second_frame>  R  N  V  Q  F  I  F  S  E  D  F  G  T  E  G  R  G  G :   Y  F  D  H  Y  G  I  I  R  D  I  M  Q  N  H  L  L  Q  I  L  A  L  F  A  M  E  T  P  V  S  L  D  A  E  D  I  R  N  E  K  :  V  K  V  L  R  S  M  R  P  L  Q  L  E  D  I  V  L  G  Q  Y  K  G  H  S  K  G  A  K  S  Y  P  A  Y  T  D  D  P  T  V  P  N  G  S  I  T  P  T  F  S  A  A  A  L  F  I  D  N  A  R  W  D  G  V  P  F  L  M  K  A  G  K  A  L  H  T  K  R :   A  E  I  R  V  Q  F  R  H  V  P  G  N  L  Y  K  R  N  F  G  A  D  M  D  K  A  T  N  E  L  V  L  R  L  Q  P  D  E  A  I  Y  L  K  I  N  N  K  V  P  G  L  G  M  R  L  D  R  S  D  L  N  L  L  Y  K  A  K :   Y  R  G  E  I  P  D  A  Y  E  R  L  L  L  D  A  I  E  G  E  R  R  L  F  I  R  S  D  E  L  D  A  A  W  A  L  F  T  P  L   </second_frame>
            <third_frame>   A  M  S  N  L  Y  F  L  K  I  L  V  P  R  D  E  E   : D  T  L  T  T  T  G  S  S  V  I  L  C  K  I  I  S  F  K  Y  *  H  C  L  L  W  K  H  L  S  A  W  M  L  R  T  S  E  M  K  R :   L  K  F  *  G  Q  *  G  H  C  N  L  K  I  L  F  L  D  S  I  R  V  I  A  R  V  L  N  H  T  Q  L  T  Q  M  I  Q  L  C  Q  M  A  V  S  L  Q  H  F  L  L  L  H  S  L  L  I  M  H  V  G  T  G  F  L  S  S  *  K  Q  E  K  L  S  I  Q  R   : G  Q  R  S  G  S  S  S  D  M  S  P  E  I  C  T  K  G  T  L  E  L  I  W  I  R  Q  P  M  S  *  F  C  V  Y  N  P  M  K  P  Y  I  *  K  L  T  T  R  F  L  V  L  E  *  D  L  T  G  V  T  L  I  F  F  T  K  Q   : S  I  E  V  K  Y  Q  M  H  M  S  G  F  C  *  M  Q  *  K  E  S  E  D  C  S  *  E  A  M  N  L  M  L  H  G  L  Y  L  R  R  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12621" stop="12569"/>
                    <exon start="12483" stop="12363"/>
                    <exon start="12248" stop="12019"/>
                    <exon start="11921" stop="11721"/>
                    <exon start="10936" stop="10816"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNVQFIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRPLQLEDIVLGQYKGHSKGAKSYPAYTDDPTVPNGSITPTFSAAALFIDNARWDGVPFLMKAGKALHTKRAEIRVQFRHVPGNLYKRNFGADMDKATNELVLRLQPDEAIYLKINNKVPGLGMRLDRSDLNLLYKAKYRGEIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="20473" PGL_stop="12935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20473" e_stop="20257"/>
            <exon e_start="15013" e_stop="14877"/>
            <exon e_start="14730" e_stop="14636"/>
            <exon e_start="14542" e_stop="14428"/>
            <exon e_start="13013" e_stop="12935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.912" acc_prob="0.871" e_score="0.954"/>
          <exon-intron don_prob="0.986" acc_prob="0.818" e_score="0.971"/>
          <exon-intron don_prob="0.987" acc_prob="0.352" e_score="0.989"/>
          <exon-intron don_prob="0.959" acc_prob="0.000" e_score="0.965"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="20473" e_stop="20257" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="0.912" acc_prob="0.871">
            <gDNA_intron_boundary i_start="20256" i_stop="15014" i_length="5243"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="15013" e_stop="14877" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.818">
            <gDNA_intron_boundary i_start="14876" i_stop="14731" i_length="146"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="14730" e_stop="14636" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.352">
            <gDNA_intron_boundary i_start="14635" i_stop="14543" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="0.965">
            <gDNA_exon_boundary e_start="14542" e_stop="14428" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14427" i_stop="13014" i_length="1414"/>
          </intron>
          <exon e_serial="5" e_score="0.949">
            <gDNA_exon_boundary e_start="13013" e_stop="12935" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20473" stop="20257"/>
              <exon start="15013" stop="14877"/>
              <exon start="14730" stop="14636"/>
              <exon start="14542" stop="14428"/>
              <exon start="13013" stop="12935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAGATTGAACCCTGTTTCTTCATCTTCAGCTGCACTTTCTCCTTCAACTTTACATAATGGAGCACCATATTTCTGCAAAAAGTTTAACTTTTTACCATTTAGAACCCAACCCCTCAATTGGGTATCTGGAATTTACTCAAGAATCCAACCAAGAAAGCATTTTGAAGTCTTTTCCTCAAATGGGTTTCCACTTAATGCAGTGTCTGTGCAAGATG : AACAAGTGCCTTTGACAGAGTTAGGAAGTGGAGAGACCACTGTCAGCATAACTGTTATTGGAGCTTCAGGTGATCTAGCCAAGAAGAAGATTTTTCCAGCTTTATTTGCTCTTTTCTATGAAGATTGTCTGCCTGAG : AATTTTGTAGTTTTTGGCTACTCACGAACAAAATTGAGTGATGAAGAGCTGAGAAACATGATCAGTACAACCTTAACTTGTCGAATTGATAAGAG : AGAGAATTGTGATGCCAAAATGGAGCATTTTCTGGAAAGATGTTTTTATCATTCCGGTCAGTACAATTCTGAGGATGATTTTGCAGAACTGGATTACAAATTAAAGGAAAAGGAG : GGTTGTAGGATTTCTAATAGGTTGTTTTACTTATCAATACCTCCAAATATATTCGTGGATGTGGTGAGATGTGCAAGTC</gDNA_template>
            <first_frame> W  R  L  N  P  V  S  S  S  S  A  A  L  S  P  S  T  L  H  N  G  A  P  Y  F  C  K  K  F  N  F  L  P  F  R  T  Q  P  L  N  W  V  S  G  I  Y  S  R  I  Q  P  R  K  H  F  E  V  F  S  S  N  G  F  P  L  N  A  V  S  V  Q  D   : E  Q  V  P  L  T  E  L  G  S  G  E  T  T  V  S  I  T  V  I  G  A  S  G  D  L  A  K  K  K  I  F  P  A  L  F  A  L  F  Y  E  D  C  L  P  E  :  N  F  V  V  F  G  Y  S  R  T  K  L  S  D  E  E  L  R  N  M  I  S  T  T  L  T  C  R  I  D  K  R :   E  N  C  D  A  K  M  E  H  F  L  E  R  C  F  Y  H  S  G  Q  Y  N  S  E  D  D  F  A  E  L  D  Y  K  L  K  E  K  E  :  G  C  R  I  S  N  R  L  F  Y  L  S  I  P  P  N  I  F  V  D  V  V  R  C  A  S  </first_frame>
            <second_frame>  G  D  *  T  L  F  L  H  L  Q  L  H  F  L  L  Q  L  Y  I  M  E  H  H  I  S  A  K  S  L  T  F  Y  H  L  E  P  N  P  S  I  G  Y  L  E  F  T  Q  E  S  N  Q  E  S  I  L  K  S  F  P  Q  M  G  F  H  L  M  Q  C  L  C  K  M  :  N  K  C  L  *  Q  S  *  E  V  E  R  P  L  S  A  *  L  L  L  E  L  Q  V  I  *  P  R  R  R  F  F  Q  L  Y  L  L  F  S  M  K  I  V  C  L  R :   I  L  *  F  L  A  T  H  E  Q  N  *  V  M  K  S  *  E  T  *  S  V  Q  P  *  L  V  E  L  I  R   : E  R  I  V  M  P  K  W  S  I  F  W  K  D  V  F  I  I  P  V  S  T  I  L  R  M  I  L  Q  N  W  I  T  N  *  R  K  R  R :   V  V  G  F  L  I  G  C  F  T  Y  Q  Y  L  Q  I  Y  S  W  M  W  *  D  V  Q  V </second_frame>
            <third_frame>   E  I  E  P  C  F  F  I  F  S  C  T  F  S  F  N  F  T  *  W  S  T  I  F  L  Q  K  V  *  L  F  T  I  *  N  P  T  P  Q  L  G  I  W  N  L  L  K  N  P  T  K  K  A  F  *  S  L  F  L  K  W  V  S  T  *  C  S  V  C  A  R  * :   T  S  A  F  D  R  V  R  K  W  R  D  H  C  Q  H  N  C  Y  W  S  F  R  *  S  S  Q  E  E  D  F  S  S  F  I  C  S  F  L  *  R  L  S  A  *   : E  F  C  S  F  W  L  L  T  N  K  I  E  *  *  R  A  E  K  H  D  Q  Y  N  L  N  L  S  N  *  *  E  :  R  E  L  *  C  Q  N  G  A  F  S  G  K  M  F  L  S  F  R  S  V  Q  F  *  G  *  F  C  R  T  G  L  Q  I  K  G  K  G   : G  L  *  D  F  *  *  V  V  L  L  I  N  T  S  K  Y  I  R  G  C  G  E  M  C  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20473" stop="20257"/>
                    <exon start="15013" stop="14877"/>
                    <exon start="14730" stop="14636"/>
                    <exon start="14542" stop="14428"/>
                    <exon start="13013" stop="12936"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WRLNPVSSSSAALSPSTLHNGAPYFCKKFNFLPFRTQPLNWVSGIYSRIQPRKHFEVFSSNGFPLNAVSVQDEQVPLTELGSGETTVSITVIGASGDLAKKKIFPALFALFYEDCLPENFVVFGYSRTKLSDEELRNMISTTLTCRIDKRENCDAKMEHFLERCFYHSGQYNSEDDFAELDYKLKEKEGCRISNRLFYLSIPPNIFVDVVRCAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="28526" PGL_stop="28702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28526" e_stop="28702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="28526" e_stop="28702" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28526" stop="28702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCGAATGGAGCCATATAAATACTTGAGTGATAGTTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGACCGCCAAATTCTATCACCCATGCACGAAGCATATACTCTAACACTTGAATTGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  *  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  Y  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  R  M  E  P  Y  K  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  D  R  Q  I  L  S  P  M  H  E  A  Y  T  L  T  L  E  L  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  E  W  S  H  I  N  T  *  V  I  V  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  T  A  K  F  Y  H  P  C  T  K  H  I  L  *  H  L  N  C  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0021D10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="30007" PGL_stop="31357"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30007" e_stop="31357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="30007" e_stop="31357" e_length="1351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30007" stop="30719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30007" stop="30602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30007" stop="30532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30078" stop="30757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30078" stop="30436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30596" stop="31357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30596" stop="31256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30999" stop="31329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGATGGTAGTAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGAATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATATCCAATACAATTCTCAGGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCATTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAATTGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATAGATACCTTGTTCAACTGCTGGTAGTTTATGCACATCCGAAAACTCTCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGAAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTCAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCTCTATCCGGTGGCATACCCGGAAGGTCTGCAGGAAACACATCTAAAAACTCATGAACTATCGAAACCGACTCAATTGTAGGTACTTGGGTAGTATCATCCCTGAGATGTACCAAGAACGCTAAACAACCCTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGAACTGGAGTGGAAGTGTAGTCGCCCTCCCACACTAACGGATCTGCCCCAGGCTTGGCTAACGTCACAGTTTTAGCGTTACAATCCAAGATCGCAAAATTCGGAGAAAGTCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAGGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACTTACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGTACATTAGCAAATGAGGAAGATACATAATAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTATGATGACAGCATCAGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  M  V  V  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  I  Q  Y  N  S  Q  V  L  L  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  C  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  P  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  I  G  P  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  G  I  L  V  L  N  R  Y  L  V  Q  L  L  V  V  Y  A  H  P  K  T  L  I  L  L  L  H  K  *  H  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  L  *  L  S  Q  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  A  E  V  N  I  S  I  R  W  H  T  R  K  V  C  R  K  H  I  *  K  L  M  N  Y  R  N  R  L  N  C  R  Y  L  G  S  I  I  P  E  M  Y  Q  E  R  *  T  T  L  T  N  H  F  L  S  T  K  K  G  D  D  T  N  W  S  G  S  V  V  A  L  P  H  *  R  I  C  P  R  L  G  *  R  H  S  F  S  V  T  I  Q  D  R  K  I  R  R  K  S  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  G  I  A  P  H  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  Y  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  Y  I  S  K  *  G  R  Y  I  I  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  Y  D  D  S  I  R  </first_frame>
            <second_frame>  N  P  L  T  N  R  W  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  E  F  T  I  T  P  S  L  E  T  T  C  P  K  K  D  I  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  R  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  I  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  L  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  M  G  Y  L  F  L  I  D  T  L  F  N  C  W  *  F  M  H  I  R  K  L  S  S  F  F  F  T  N  N  T  G  A  P  Q  E  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  *  T  I  E  T  D  S  I  V  G  T  W  V  V  S  S  L  R  C  T  K  N  A  K  Q  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  V  E  V  *  S  P  S  H  T  N  G  S  A  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  P  D  L  Y  T  F  S  T  I  T  D  S  L  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  S  T  L  A  N  E  E  D  T  *  *  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  M  M  T  A  S  D </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  S  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  N  S  P  S  P  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  Y  P  I  Q  F  S  G  A  P  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  L  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  S  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  W  T  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  W  D  T  C  S  *  *  I  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  I  T  P  E  H  P  K  K  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  P  L  T  L  S  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  C  R  S  Q  Y  L  Y  P  V  A  Y  P  E  G  L  Q  E  T  H  L  K  T  H  E  L  S  K  P  T  Q  L  *  V  L  G  *  Y  H  P  *  D  V  P  R  T  L  N  N  P  Y  *  P  F  S  *  H  E  E  R  R  *  Y  E  L  E  W  K  C  S  R  P  P  T  L  T  D  L  P  Q  A  W  L  T  S  Q  F  *  R  Y  N  P  R  S  Q  N  S  E  K  V  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  R  Y  C  S  P  Q  K  S  P  D  Q  T  Y  I  L  F  Q  L  S  Q  T  H  L  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  V  H  *  Q  M  R  K  I  H  N  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30271" stop="30510"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEIQIWLKNPVHQAHESSRGICKTKRHHYKFVMPIPGPKSSLWHIRCPYFQLMIIGPQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30203" stop="30400"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILRCSSCSFLLFEYTNISSINTITKRSRYGLKIPFIKLMKAAGAFVRPKDIITNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="32026" PGL_stop="30629"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32026" e_stop="31854"/>
            <exon e_start="31106" e_stop="30629"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.913"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="32026" e_stop="31854" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31853" i_stop="31107" i_length="747"/>
          </intron>
          <exon e_serial="2" e_score="0.904">
            <gDNA_exon_boundary e_start="31106" e_stop="30629" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32026" stop="31854"/>
              <exon start="31106" stop="30629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATTTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCATTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTGCAGGTAGCGGCTACGGCAAAATCCTTTCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGACTTTCTCCGAATTTTGCGATCTTGGATTGTAACGCTAAAACTGTGACGTTAGCCAAGCCTGGGGCAGATCCGTTAGTGTGGGAGGGCGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGTACATCTCAGGGATGATACTACCCAAGTACCTACAATTGAGTCGGTTTCGATAGTTCATGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCGGGTATGCCACCGGATAGAGATATTGACTTCTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTGAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTTCTTGGGGTGCTCCGGT</gDNA_template>
            <first_frame> A  R  *  D  F  G  Y  C  I  *  G  *  V  S  C  I  I  Q  V  C  H  P  T  L  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  I  A  D  F  S  L  A  G  S  G  Y  G  K  I  L  S  R :   N  G  *  F  *  C  N  S  G  Y  D  L  T  F  S  E  F  C  D  L  G  L  *  R  *  N  C  D  V  S  Q  A  W  G  R  S  V  S  V  G  G  R  L  H  F  H  S  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  V  L  G  T  S  Q  G  *  Y  Y  P  S  T  Y  N  *  V  G  F  D  S  S  *  V  F  R  C  V  S  C  R  P  S  G  Y  A  T  G  *  R  Y  *  L  L  H  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  E  R  V  K  G  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  F  L  G  C  S  G </first_frame>
            <second_frame>  Q  G  R  I  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  H  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  *  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  A  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  V  H  L  R  D  D  T  T  Q  V  P  T  I  E  S  V  S  I  V  H  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  S  W  G  A  P   </second_frame>
            <third_frame>   K  V  G  F  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  F  V  S  V  H  K  S  G  F  A  I  L  *  R  G  *  G  Q  N  C  G  F  Q  P  C  R  *  R  L  R  Q  N  P  F  K  :  K  W  L  I  L  M  *  F  W  V  *  L  D  F  L  R  I  L  R  S  W  I  V  T  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  A  T  T  L  P  L  Q  F  V  S  S  P  F  F  V  L  R  K  W  L  V  R  V  V  *  R  S  W  Y  I  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  F  M  S  F  *  M  C  F  L  Q  T  F  R  V  C  H  R  I  E  I  L  T  S  A  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31068" stop="30631"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPNFAILDCNAKTVTLAKPGADPLVWEGDYTSTPVRIISFLRAKKMVSKGCLAFLVHLRDDTTQVPTIESVSIVHEFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASSWGAP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32025" stop="31854"/>
                    <exon start="31106" stop="31069"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRISVTAYEAKFRALSRYATQLCFSPQERIRHFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="32643" PGL_stop="32100"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32643" e_stop="32100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="32643" e_stop="32100" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32643" stop="32100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTGGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTAATCTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTACACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGACACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTAGGGTGCTGAATCTAAGGATGCCTATGATTTTCTGATTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> A  W  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  R  G  G  W  G  K  *  T  S  T  E  *  G  I  T  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  S  A  S  S  V  F  Y  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  *  G  A  E  S  K  D  A  Y  D  F  L  I  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </first_frame>
            <second_frame>  P  G  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  *  S  D  Q  G  Q  A  P  P  V  F  S  T  P  A  P  Q  A  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  D  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  R  V  L  N  L  R  M  P  M  I  F  *  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  M  N  K  Y  R  M  R  N  Y  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  N  L  I  K  A  K  R  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  T  R  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  G  C  *  I  *  G  C  L  *  F  S  D  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32483" stop="32256"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDQGQAPPVFSTPAPQAPEVQHAATVAPRMDASLEIDTFPRLTTGPIMTNDQHELFSKFLKLKPRVLNLRMPMIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="33002" PGL_stop="32717"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33002" e_stop="32717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="33002" e_stop="32717" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33002" stop="32717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAACTTCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTTACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGATGCATCTGAGCCAGCCACTGAGACTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  M  P  L  L  F  F  E  R  L  *  D  F  R  K  T  S  F  F  L  S  F  F  R  A  I  T  W  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  Y  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  S  T  S  A  R  Q  D  A  S  E  P  A  T  E  T  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  C  L  Y  F  S  L  R  G  Y  K  T  L  G  K  L  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  Q  P  R  Q  H  Q  H  R  Q  D  K  M  H  L  S  Q  P  L  R  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  F  I  L  S  F  F  L  S  C  Y  Y  L  D  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  L  L  Y  F  A  D  G  *  N  *  S  N  N  R  A  N  I  N  I  G  K  T  R  C  I  *  A  S  H  *  D  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32953" stop="32717"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGCLYFSLRGYKTLGKLHSFFLSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQQPRQHQHRQDKMHLSQPLRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="38301" PGL_stop="39111"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38301" e_stop="39111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="38301" e_stop="39111" e_length="811"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38301" stop="39111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38333" stop="38902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38333" stop="38873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38342" stop="38901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38343" stop="38797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAAAAAAAAATCCCAAACACTTCTCAAGAAAACTCTAAAAAAGTTTTTTTTTTTTCCAATTTCAAGAAAATGGAAAATATGAGCTTGAATAGCCAATTTTATTTTCTAAAAAATGCAATGAGAATTCTACTTCCACTTTCAGTATTTTCATTGATGTTTTCTCAATATTATTTAATATTTCCATCTCTTTTTAATTCATTTAATGAATTTTCTTCTAATTTTTCTATTCAACTTTTCACCTATAGCTCAGAAAGAAACTATATTTTTCTTCTTTGTAATGGAATTCTTGTTTTCATAATCAAGAATTCAGGACTAATTAGTACTACTAATATTTCTGATAATCATCATCATCATTATCCCAAAGAATCCAAAATTCAAGAAACAAATATAGAGTCTCTTGAAAAAGTTGTTGAAATTGAAAAACAAGAAAAAGAAGAAGAAATTGAAACAATGAATATTCAAGATGATTTGGTTAGTGTTGAAACTATTGATGAGAATGAAGTTTATCAAGAATCCGAAGATAGTAAGCTTTTTCTTCAGAATAATCAATTAGATTATCATTCTGTGCGTTGTGTTGAAGTTATTGAAGAATTTGAAGAAGTGGAAGAATTTGAAGAAGAAGAAACATTAGAAGAGTTACACAAGAAGTGTGATGATTTTATAAAGAGGATTAAGAAAGAGATCAATAGAAAGAATTGATTGATGGAAAAAAAAAATTAACCAATAAGGGGGTTAGCATCTTGCTATGACATATAATTAACCATGTATTCACTCCTTTTTAACTAGTCGATATTTGATATCTATTTT</gDNA_template>
            <first_frame> K  K  K  K  N  P  K  H  F  S  R  K  L  *  K  S  F  F  F  F  Q  F  Q  E  N  G  K  Y  E  L  E  *  P  I  L  F  S  K  K  C  N  E  N  S  T  S  T  F  S  I  F  I  D  V  F  S  I  L  F  N  I  S  I  S  F  *  F  I  *  *  I  F  F  *  F  F  Y  S  T  F  H  L  *  L  R  K  K  L  Y  F  S  S  L  *  W  N  S  C  F  H  N  Q  E  F  R  T  N  *  Y  Y  *  Y  F  *  *  S  S  S  S  L  S  Q  R  I  Q  N  S  R  N  K  Y  R  V  S  *  K  S  C  *  N  *  K  T  R  K  R  R  R  N  *  N  N  E  Y  S  R  *  F  G  *  C  *  N  Y  *  *  E  *  S  L  S  R  I  R  R  *  *  A  F  S  S  E  *  S  I  R  L  S  F  C  A  L  C  *  S  Y  *  R  I  *  R  S  G  R  I  *  R  R  R  N  I  R  R  V  T  Q  E  V  *  *  F  Y  K  E  D  *  E  R  D  Q  *  K  E  L  I  D  G  K  K  K  L  T  N  K  G  V  S  I  L  L  *  H  I  I  N  H  V  F  T  P  F  *  L  V  D  I  *  Y  L  F  </first_frame>
            <second_frame>  K  K  K  K  I  P  N  T  S  Q  E  N  S  K  K  V  F  F  F  S  N  F  K  K  M  E  N  M  S  L  N  S  Q  F  Y  F  L  K  N  A  M  R  I  L  L  P  L  S  V  F  S  L  M  F  S  Q  Y  Y  L  I  F  P  S  L  F  N  S  F  N  E  F  S  S  N  F  S  I  Q  L  F  T  Y  S  S  E  R  N  Y  I  F  L  L  C  N  G  I  L  V  F  I  I  K  N  S  G  L  I  S  T  T  N  I  S  D  N  H  H  H  H  Y  P  K  E  S  K  I  Q  E  T  N  I  E  S  L  E  K  V  V  E  I  E  K  Q  E  K  E  E  E  I  E  T  M  N  I  Q  D  D  L  V  S  V  E  T  I  D  E  N  E  V  Y  Q  E  S  E  D  S  K  L  F  L  Q  N  N  Q  L  D  Y  H  S  V  R  C  V  E  V  I  E  E  F  E  E  V  E  E  F  E  E  E  E  T  L  E  E  L  H  K  K  C  D  D  F  I  K  R  I  K  K  E  I  N  R  K  N  *  L  M  E  K  K  N  *  P  I  R  G  L  A  S  C  Y  D  I  *  L  T  M  Y  S  L  L  F  N  *  S  I  F  D  I  Y  F </second_frame>
            <third_frame>   K  K  K  K  S  Q  T  L  L  K  K  T  L  K  K  F  F  F  F  P  I  S  R  K  W  K  I  *  A  *  I  A  N  F  I  F  *  K  M  Q  *  E  F  Y  F  H  F  Q  Y  F  H  *  C  F  L  N  I  I  *  Y  F  H  L  F  L  I  H  L  M  N  F  L  L  I  F  L  F  N  F  S  P  I  A  Q  K  E  T  I  F  F  F  F  V  M  E  F  L  F  S  *  S  R  I  Q  D  *  L  V  L  L  I  F  L  I  I  I  I  I  I  I  P  K  N  P  K  F  K  K  Q  I  *  S  L  L  K  K  L  L  K  L  K  N  K  K  K  K  K  K  L  K  Q  *  I  F  K  M  I  W  L  V  L  K  L  L  M  R  M  K  F  I  K  N  P  K  I  V  S  F  F  F  R  I  I  N  *  I  I  I  L  C  V  V  L  K  L  L  K  N  L  K  K  W  K  N  L  K  K  K  K  H  *  K  S  Y  T  R  S  V  M  I  L  *  R  G  L  R  K  R  S  I  E  R  I  D  *  W  K  K  K  I  N  Q  *  G  G  *  H  L  A  M  T  Y  N  *  P  C  I  H  S  F  L  T  S  R  Y  L  I  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38302" stop="39003"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKKIPNTSQENSKKVFFFSNFKKMENMSLNSQFYFLKNAMRILLPLSVFSLMFSQYYLIFPSLFNSFNEFSSNFSIQLFTYSSERNYIFLLCNGILVFIIKNSGLISTTNISDNHHHHYPKESKIQETNIESLEKVVEIEKQEKEEEIETMNIQDDLVSVETIDENEVYQESEDSKLFLQNNQLDYHSVRCVEVIEEFEEVEEFEEEETLEELHKKCDDFIKRIKKEINRKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="50423" PGL_stop="50723"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50423" e_stop="50723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="50423" e_stop="50723" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50423" stop="50723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATATGGCAGGAAACCATTCGCCTGGTACTGTCACTCGTCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTACCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGACTCAAGCAAACCCCCCGTGCGTGGTACACACGTCTGAAAACGTT</gDNA_template>
            <first_frame> V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  Y  G  R  K  P  F  A  W  Y  C  H  S  S  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  Y  L  N  M  F  A  N  S  R  S  L  C  M  D  S  S  K  P  P  V  R  G  T  H  V  *  K  R  </first_frame>
            <second_frame>  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  M  A  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  T  S  T  C  L  Q  T  P  E  V  S  V  W  T  Q  A  N  P  P  C  V  V  H  T  S  E  N  V </second_frame>
            <third_frame>   L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  W  Q  E  T  I  R  L  V  L  S  L  V  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  L  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  T  P  R  A  W  Y  T  R  L  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50425" stop="50721"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVAKGYNQEYGLDYSETFSPVIWQETIRLVLSLVVRNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVDPRLPQHVCKLQKSLYGLKQTPRAWYTRLKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 198 chains have been computed
$ 
$ memory statistics:
$ 49152 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 2234 bytes was the average size of a spliced alignment
$ 15224 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1691 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 277 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 18:29:34
-->
