<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-03 15:02:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0021D10.2" temp_strand="+" temp_description="C07SLm0021D10.2  AC212649.2 htgs_phase:2 submitted_to_sgn_as:gi|205277512|gb|AC212649.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39193" stop="39970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39493" g_stop="39669" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.2" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39493" e_stop="39669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCGAATGGAGCCATATAAATACTTGAGTGATAGTTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGACCGCCAAATTCTATCACCCATGCACGAAGCATATACTCTAACACTTGAATTGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0021D10.2" temp_strand="+" temp_description="C07SLm0021D10.2  AC212649.2 htgs_phase:2 submitted_to_sgn_as:gi|205277512|gb|AC212649.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40674" stop="41986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40974" g_stop="41686" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.2" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40974" e_stop="41686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGATGGTAGTAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGAATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATATCCAATACAATTCTCAGGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCATTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAATTGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATAGATACCTTGTTCAACTGCTGGTAGTTTATGCACATCCGAAAACTCTCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGAAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTCAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0021D10.2" temp_strand="+" temp_description="C07SLm0021D10.2  AC212649.2 htgs_phase:2 submitted_to_sgn_as:gi|205277512|gb|AC212649.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41263" stop="42620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41563" g_stop="42320" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.2" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41563" e_stop="42320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCTCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGAAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTCAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCTCTATCCGGTGGCATACCCGGAAGGTCTGCAGGAAACACATCTAAAAACTCATGAACTATCGAAACCGACTCAATTGTAGGTACTTGGGTAGTATCATCCCTGAGATGTACCAAGAACGCTAAACAACCCTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGAACTGGAGTGGAAGTGTAGTCGCCCTCCCACACTAACGGATCTGCCCCAGGCTTGGCTAACGTCACAGTTTTAGCGTTACAATCCAAGATCGCAAAATTCGGAGAAAGTCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAGGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACTTACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGTACATTAGCAAATGAGGAAGATACATAATAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTATGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0021D10.2" temp_strand="-" temp_description="C07SLm0021D10.2  AC212649.2 htgs_phase:2 submitted_to_sgn_as:gi|205277512|gb|AC212649.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="43293" stop="41282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42993" g_stop="42821" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42820" i_stop="42074" i_length="747">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42073" g_stop="41596" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="651" r_length="478" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.2" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42993" e_stop="42821"/>
          <exon e_start="42073" e_stop="41596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATTTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCATTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTGCAGGTAGCGGCTACGGCAAAATCCTTTCAAGAAGTAGTAGACTTCGTGATAGAGGTGGAAGGAGTGAAGCTAGATGACTTCACCATGGCATCGACATAAAAGAGGTTTTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACTGGTCAACACTTCTATGAGAGACCCATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATAACTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGCCGAGGTAATGGTAGTCACCAAAACGGCCGGGGTGACGGACAAATGGGAACTACTGCAGCGCAACATGGTAGGGGCAACGGGCAGACAGGTGATAGGGCCCATTGTTATGCTTTCCCTGGGAGATCTGAAGCGGAGACATCTGATGCTGTCATCATAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTATTATGTATCTTCCTCATTTGCTAATGTACTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTAAGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTGGTCTGGTGACTTTTGTGGGGAGCAATACCTATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGACTTTCTCCGAATTTTGCGATCTTGGATTGTAACGCTAAAACTGTGACGTTAGCCAAGCCTGGGGCAGATCCGTTAGTGTGGGAGGGCGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGTACATCTCAGGGATGATACTACCCAAGTACCTACAATTGAGTCGGTTTCGATAGTTCATGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCGGGTATGCCACCGGATAGAGATATTGACTTCTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTGAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTTCTTGGGGTGCTCCGGT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0021D10.2" temp_strand="+" temp_description="C07SLm0021D10.2  AC212649.2 htgs_phase:2 submitted_to_sgn_as:gi|205277512|gb|AC212649.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41666" stop="42596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41966" g_stop="42296" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.2" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41966" e_stop="42296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGCCCCAGGCTTGGCTAACGTCACAGTTTTAGCGTTACAATCCAAGATCGCAAAATTCGGAGAAAGTCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAGGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACTTACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGTACATTAGCAAATGAGGAAGATACATAATAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0021D10.2" temp_strand="-" temp_description="C07SLm0021D10.2  AC212649.2 htgs_phase:2 submitted_to_sgn_as:gi|205277512|gb|AC212649.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="43909" stop="42767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43610" g_stop="43067" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.2" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43610" e_stop="43067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTAATCTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTACACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGACACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAA---C----CT---AGGGTGCTGAATCTAAGGATGCCTATGATTTTCTGATTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0021D10.2" temp_strand="-" temp_description="C07SLm0021D10.2  AC212649.2 htgs_phase:2 submitted_to_sgn_as:gi|205277512|gb|AC212649.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44269" stop="43384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43969" g_stop="43684" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.2" gen_strand="-" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43969" e_stop="43684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAACTTCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTTACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGATGCATCTGAGCCAGCCACTGAGACTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317003" ref_strand="+" ref_description="SGN-U317003        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:4223015-4223620 FORWARD | Aliases: MJG19.8(evalue: 7e-05, score=44.7)">
      <seq>aaaaaaaaaaaaaatcccaaacacttctcaagaaaactctaaaaaagttttttttttttccaatttcaagaaaatggaaaatatgagcttgaatagccaattttattttctaaaaaatgcaatgagaattctacttccactttcagtattttcattgatgttttctcaatattatttaatatttccatctctttttaattcatttaatgaattttcttctaatttttctattcaacttttcacctatagctcagaaagaaactatatttttcttctttgtaatggaattcttgttttcataatcaagaattcaggactaattagtactactaatatttctgataatcatcatcatcattatcccaaagaatccaaaattcaagaaacaaatatagagtctcttgaaaaagttgttgaaattgaaaaacaagaaaaagaagaagaaattgaaacaatgaatattcaagatgatttggttagtgttgaaactattgatgagaatgaagtttatcaagaatccgaagatagtaagctttttcttcagaataatcaattagattatcattctgtgcgttgtgttgaagttattgaagaatttgaagaagtggaagaatttgaagaagaagaaacattagaagagttacacaagaagtgtgatgattttataaagaggattaagaaagagatcaatagaaagaattgattgatggaaaaaaaaaaataaccaataagggggttagcatcttgctatgacatataattaaccatgtattcactccttttttactagtcgaatttgatatctatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0021D10.2" temp_strand="+" temp_description="C07SLm0021D10.2  AC212649.2 htgs_phase:2 submitted_to_sgn_as:gi|205277512|gb|AC212649.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="48968" stop="50378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49268" g_stop="50078" g_length="811"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="810" r_length="810" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.2" gen_strand="+" ref_id="SGN-U317003" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49268" e_stop="50078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAAATCCCAAACACTTCTCAAGAAAACTCTAAAAAAGTTTTTTTTTTTTCCAATTTCAAGAAAATGGAAAATATGAGCTTGAATAGCCAATTTTATTTTCTAAAAAATGCAATGAGAATTCTACTTCCACTTTCAGTATTTTCATTGATGTTTTCTCAATATTATTTAATATTTCCATCTCTTTTTAATTCATTTAATGAATTTTCTTCTAATTTTTCTATTCAACTTTTCACCTATAGCTCAGAAAGAAACTATATTTTTCTTCTTTGTAATGGAATTCTTGTTTTCATAATCAAGAATTCAGGACTAATTAGTACTACTAATATTTCTGATAATCATCATCATCATTATCCCAAAGAATCCAAAATTCAAGAAACAAATATAGAGTCTCTTGAAAAAGTTGTTGAAATTGAAAAACAAGAAAAAGAAGAAGAAATTGAAACAATGAATATTCAAGATGATTTGGTTAGTGTTGAAACTATTGATGAGAATGAAGTTTATCAAGAATCCGAAGATAGTAAGCTTTTTCTTCAGAATAATCAATTAGATTATCATTCTGTGCGTTGTGTTGAAGTTATTGAAGAATTTGAAGAAGTGGAAGAATTTGAAGAAGAAGAAACATTAGAAGAGTTACACAAGAAGTGTGATGATTTTATAAAGAGGATTAAGAAAGAGATCAATAGAAAGAATTGATTGATGGAAAAAAAAAATTAACCAATAAGGGGGTTAGCATCTTGCTATGACATATAATTAACCATGTATTCACTCCTTTTTAACTAGTCGATATTTGATATCTATTTT</genome_strand>
        <mrna_strand>AAAAAAAAAAAAAATCCCAAACACTTCTCAAGAAAACTCTAAAAAAGTTTTTTTTTTTTCCAATTTCAAGAAAATGGAAAATATGAGCTTGAATAGCCAATTTTATTTTCTAAAAAATGCAATGAGAATTCTACTTCCACTTTCAGTATTTTCATTGATGTTTTCTCAATATTATTTAATATTTCCATCTCTTTTTAATTCATTTAATGAATTTTCTTCTAATTTTTCTATTCAACTTTTCACCTATAGCTCAGAAAGAAACTATATTTTTCTTCTTTGTAATGGAATTCTTGTTTTCATAATCAAGAATTCAGGACTAATTAGTACTACTAATATTTCTGATAATCATCATCATCATTATCCCAAAGAATCCAAAATTCAAGAAACAAATATAGAGTCTCTTGAAAAAGTTGTTGAAATTGAAAAACAAGAAAAAGAAGAAGAAATTGAAACAATGAATATTCAAGATGATTTGGTTAGTGTTGAAACTATTGATGAGAATGAAGTTTATCAAGAATCCGAAGATAGTAAGCTTTTTCTTCAGAATAATCAATTAGATTATCATTCTGTGCGTTGTGTTGAAGTTATTGAAGAATTTGAAGAAGTGGAAGAATTTGAAGAAGAAGAAACATTAGAAGAGTTACACAAGAAGTGTGATGATTTTATAAAGAGGATTAAGAAAGAGATCAATAGAAAGAATTGATTGATGGAAAAAAAAAAATAACCAATAAGGGGGTTAGCATCTTGCTATGACATATAATTAACCATGTATTCACTCCTTTTTTACTAGTCGA-ATTTGATATCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346798" ref_strand="+" ref_description="SGN-U346798        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-36, score=149) genbank/nr: gi|37530894|ref|NP_919749.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] gi|18642681|gb|AAK02020.2| Putative gag-pol polyprotein [Oryza sativa] gi|31430072|gb|AAP52036.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)](evalue: 3e-43, score=178)">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0021D10.2" temp_strand="+" temp_description="C07SLm0021D10.2  AC212649.2 htgs_phase:2 submitted_to_sgn_as:gi|205277512|gb|AC212649.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="60664" stop="61749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60964" g_stop="61449" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.2" gen_strand="+" ref_id="SGN-U346798" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60964" e_stop="61449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGTAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGATCCTTCCCGGCCAACCCCGGATCACCACCGCCCGTGCCATCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACATTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCCACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCTGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344877" ref_strand="+" ref_description="SGN-U344877        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-36, score=149) genbank/nr: retrotransposon(evalue: 5e-50, score=201)">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0021D10-1PGTR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0021D10.2" temp_strand="+" temp_description="C07SLm0021D10.2  AC212649.2 htgs_phase:2 submitted_to_sgn_as:gi|205277512|gb|AC212649.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0021D10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="61090" stop="61990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61390" g_stop="61690" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0021D10.2" gen_strand="+" ref_id="SGN-U344877" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0021D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61390" e_stop="61690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATATGGCAGGAAACCATTCGCCTGGTACTGTCACTCGTCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTACCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGACTCAAGCAAACCCCCCGTGCGTGGTACACACGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="39493" PGL_stop="39669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39493" e_stop="39669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="39493" e_stop="39669" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39493" stop="39669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCGAATGGAGCCATATAAATACTTGAGTGATAGTTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGACCGCCAAATTCTATCACCCATGCACGAAGCATATACTCTAACACTTGAATTGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  *  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  Y  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  R  M  E  P  Y  K  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  D  R  Q  I  L  S  P  M  H  E  A  Y  T  L  T  L  E  L  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  E  W  S  H  I  N  T  *  V  I  V  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  T  A  K  F  Y  H  P  C  T  K  H  I  L  *  H  L  N  C  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0021D10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="40974" PGL_stop="42320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40974" e_stop="42320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="40974" e_stop="42320" e_length="1347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40974" stop="41686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41563" stop="42320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41966" stop="42296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGATGGTAGTAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGAATTCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATATCCAATACAATTCTCAGGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCATTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAATTGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATAGATACCTTGTTCAACTGCTGGTAGTTTATGCACATCCGAAAACTCTCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGAAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTCAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCTCTATCCGGTGGCATACCCGGAAGGTCTGCAGGAAACACATCTAAAAACTCATGAACTATCGAAACCGACTCAATTGTAGGTACTTGGGTAGTATCATCCCTGAGATGTACCAAGAACGCTAAACAACCCTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGAACTGGAGTGGAAGTGTAGTCGCCCTCCCACACTAACGGATCTGCCCCAGGCTTGGCTAACGTCACAGTTTTAGCGTTACAATCCAAGATCGCAAAATTCGGAGAAAGTCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAGGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACTTACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGTACATTAGCAAATGAGGAAGATACATAATAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTATGATGACAGCATC</gDNA_template>
            <first_frame> E  S  L  D  K  S  M  V  V  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  I  Q  Y  N  S  Q  V  L  L  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  C  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  P  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  I  G  P  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  G  I  L  V  L  N  R  Y  L  V  Q  L  L  V  V  Y  A  H  P  K  T  L  I  L  L  L  H  K  *  H  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  L  *  L  S  Q  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  A  E  V  N  I  S  I  R  W  H  T  R  K  V  C  R  K  H  I  *  K  L  M  N  Y  R  N  R  L  N  C  R  Y  L  G  S  I  I  P  E  M  Y  Q  E  R  *  T  T  L  T  N  H  F  L  S  T  K  K  G  D  D  T  N  W  S  G  S  V  V  A  L  P  H  *  R  I  C  P  R  L  G  *  R  H  S  F  S  V  T  I  Q  D  R  K  I  R  R  K  S  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  G  I  A  P  H  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  Y  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  Y  I  S  K  *  G  R  Y  I  I  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  Y  D  D  S  I </first_frame>
            <second_frame>  N  P  L  T  N  R  W  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  E  F  T  I  T  P  S  L  E  T  T  C  P  K  K  D  I  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  R  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  I  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  L  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  M  G  Y  L  F  L  I  D  T  L  F  N  C  W  *  F  M  H  I  R  K  L  S  S  F  F  F  T  N  N  T  G  A  P  Q  E  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  *  T  I  E  T  D  S  I  V  G  T  W  V  V  S  S  L  R  C  T  K  N  A  K  Q  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  V  E  V  *  S  P  S  H  T  N  G  S  A  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  P  D  L  Y  T  F  S  T  I  T  D  S  L  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  S  T  L  A  N  E  E  D  T  *  *  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  M  M  T  A   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  S  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  N  S  P  S  P  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  Y  P  I  Q  F  S  G  A  P  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  L  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  S  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  W  T  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  W  D  T  C  S  *  *  I  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  I  T  P  E  H  P  K  K  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  P  L  T  L  S  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  C  R  S  Q  Y  L  Y  P  V  A  Y  P  E  G  L  Q  E  T  H  L  K  T  H  E  L  S  K  P  T  Q  L  *  V  L  G  *  Y  H  P  *  D  V  P  R  T  L  N  N  P  Y  *  P  F  S  *  H  E  E  R  R  *  Y  E  L  E  W  K  C  S  R  P  P  T  L  T  D  L  P  Q  A  W  L  T  S  Q  F  *  R  Y  N  P  R  S  Q  N  S  E  K  V  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  R  Y  C  S  P  Q  K  S  P  D  Q  T  Y  I  L  F  Q  L  S  Q  T  H  L  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  V  H  *  Q  M  R  K  I  H  N  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41238" stop="41477"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEIQIWLKNPVHQAHESSRGICKTKRHHYKFVMPIPGPKSSLWHIRCPYFQLMIIGPQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41170" stop="41367"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILRCSSCSFLLFEYTNISSINTITKRSRYGLKIPFIKLMKAAGAFVRPKDIITNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="42993" PGL_stop="41596"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42993" e_stop="42821"/>
            <exon e_start="42073" e_stop="41596"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.913"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="42993" e_stop="42821" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42820" i_stop="42074" i_length="747"/>
          </intron>
          <exon e_serial="2" e_score="0.904">
            <gDNA_exon_boundary e_start="42073" e_stop="41596" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42993" stop="42821"/>
              <exon start="42073" stop="41596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATTTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCATTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTGCAGGTAGCGGCTACGGCAAAATCCTTTCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGACTTTCTCCGAATTTTGCGATCTTGGATTGTAACGCTAAAACTGTGACGTTAGCCAAGCCTGGGGCAGATCCGTTAGTGTGGGAGGGCGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGTACATCTCAGGGATGATACTACCCAAGTACCTACAATTGAGTCGGTTTCGATAGTTCATGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCGGGTATGCCACCGGATAGAGATATTGACTTCTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTGAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTTCTTGGGGTGCTCCGGT</gDNA_template>
            <first_frame> A  R  *  D  F  G  Y  C  I  *  G  *  V  S  C  I  I  Q  V  C  H  P  T  L  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  I  A  D  F  S  L  A  G  S  G  Y  G  K  I  L  S  R :   N  G  *  F  *  C  N  S  G  Y  D  L  T  F  S  E  F  C  D  L  G  L  *  R  *  N  C  D  V  S  Q  A  W  G  R  S  V  S  V  G  G  R  L  H  F  H  S  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  V  L  G  T  S  Q  G  *  Y  Y  P  S  T  Y  N  *  V  G  F  D  S  S  *  V  F  R  C  V  S  C  R  P  S  G  Y  A  T  G  *  R  Y  *  L  L  H  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  E  R  V  K  G  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  F  L  G  C  S  G </first_frame>
            <second_frame>  Q  G  R  I  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  H  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  *  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  A  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  V  H  L  R  D  D  T  T  Q  V  P  T  I  E  S  V  S  I  V  H  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  S  W  G  A  P   </second_frame>
            <third_frame>   K  V  G  F  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  F  V  S  V  H  K  S  G  F  A  I  L  *  R  G  *  G  Q  N  C  G  F  Q  P  C  R  *  R  L  R  Q  N  P  F  K  :  K  W  L  I  L  M  *  F  W  V  *  L  D  F  L  R  I  L  R  S  W  I  V  T  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  A  T  T  L  P  L  Q  F  V  S  S  P  F  F  V  L  R  K  W  L  V  R  V  V  *  R  S  W  Y  I  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  F  M  S  F  *  M  C  F  L  Q  T  F  R  V  C  H  R  I  E  I  L  T  S  A  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42035" stop="41598"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPNFAILDCNAKTVTLAKPGADPLVWEGDYTSTPVRIISFLRAKKMVSKGCLAFLVHLRDDTTQVPTIESVSIVHEFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASSWGAP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42992" stop="42821"/>
                    <exon start="42073" stop="42036"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRISVTAYEAKFRALSRYATQLCFSPQERIRHFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="43610" PGL_stop="43067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43610" e_stop="43067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="43610" e_stop="43067" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43610" stop="43067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTGGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTAATCTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTACACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGACACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTAGGGTGCTGAATCTAAGGATGCCTATGATTTTCTGATTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> A  W  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  R  G  G  W  G  K  *  T  S  T  E  *  G  I  T  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  S  A  S  S  V  F  Y  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  *  G  A  E  S  K  D  A  Y  D  F  L  I  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </first_frame>
            <second_frame>  P  G  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  *  S  D  Q  G  Q  A  P  P  V  F  S  T  P  A  P  Q  A  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  D  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  R  V  L  N  L  R  M  P  M  I  F  *  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  M  N  K  Y  R  M  R  N  Y  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  N  L  I  K  A  K  R  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  T  R  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  G  C  *  I  *  G  C  L  *  F  S  D  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43450" stop="43223"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDQGQAPPVFSTPAPQAPEVQHAATVAPRMDASLEIDTFPRLTTGPIMTNDQHELFSKFLKLKPRVLNLRMPMIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="43969" PGL_stop="43684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43969" e_stop="43684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="43969" e_stop="43684" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43969" stop="43684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAACTTCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTTACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGATGCATCTGAGCCAGCCACTGAGACTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  M  P  L  L  F  F  E  R  L  *  D  F  R  K  T  S  F  F  L  S  F  F  R  A  I  T  W  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  Y  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  S  T  S  A  R  Q  D  A  S  E  P  A  T  E  T  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  C  L  Y  F  S  L  R  G  Y  K  T  L  G  K  L  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  Q  P  R  Q  H  Q  H  R  Q  D  K  M  H  L  S  Q  P  L  R  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  F  I  L  S  F  F  L  S  C  Y  Y  L  D  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  L  L  Y  F  A  D  G  *  N  *  S  N  N  R  A  N  I  N  I  G  K  T  R  C  I  *  A  S  H  *  D  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43920" stop="43684"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGCLYFSLRGYKTLGKLHSFFLSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQQPRQHQHRQDKMHLSQPLRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="49268" PGL_stop="50078"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49268" e_stop="50078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="49268" e_stop="50078" e_length="811"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49268" stop="50078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAAAAAAAAATCCCAAACACTTCTCAAGAAAACTCTAAAAAAGTTTTTTTTTTTTCCAATTTCAAGAAAATGGAAAATATGAGCTTGAATAGCCAATTTTATTTTCTAAAAAATGCAATGAGAATTCTACTTCCACTTTCAGTATTTTCATTGATGTTTTCTCAATATTATTTAATATTTCCATCTCTTTTTAATTCATTTAATGAATTTTCTTCTAATTTTTCTATTCAACTTTTCACCTATAGCTCAGAAAGAAACTATATTTTTCTTCTTTGTAATGGAATTCTTGTTTTCATAATCAAGAATTCAGGACTAATTAGTACTACTAATATTTCTGATAATCATCATCATCATTATCCCAAAGAATCCAAAATTCAAGAAACAAATATAGAGTCTCTTGAAAAAGTTGTTGAAATTGAAAAACAAGAAAAAGAAGAAGAAATTGAAACAATGAATATTCAAGATGATTTGGTTAGTGTTGAAACTATTGATGAGAATGAAGTTTATCAAGAATCCGAAGATAGTAAGCTTTTTCTTCAGAATAATCAATTAGATTATCATTCTGTGCGTTGTGTTGAAGTTATTGAAGAATTTGAAGAAGTGGAAGAATTTGAAGAAGAAGAAACATTAGAAGAGTTACACAAGAAGTGTGATGATTTTATAAAGAGGATTAAGAAAGAGATCAATAGAAAGAATTGATTGATGGAAAAAAAAAATTAACCAATAAGGGGGTTAGCATCTTGCTATGACATATAATTAACCATGTATTCACTCCTTTTTAACTAGTCGATATTTGATATCTATTTT</gDNA_template>
            <first_frame> K  K  K  K  N  P  K  H  F  S  R  K  L  *  K  S  F  F  F  F  Q  F  Q  E  N  G  K  Y  E  L  E  *  P  I  L  F  S  K  K  C  N  E  N  S  T  S  T  F  S  I  F  I  D  V  F  S  I  L  F  N  I  S  I  S  F  *  F  I  *  *  I  F  F  *  F  F  Y  S  T  F  H  L  *  L  R  K  K  L  Y  F  S  S  L  *  W  N  S  C  F  H  N  Q  E  F  R  T  N  *  Y  Y  *  Y  F  *  *  S  S  S  S  L  S  Q  R  I  Q  N  S  R  N  K  Y  R  V  S  *  K  S  C  *  N  *  K  T  R  K  R  R  R  N  *  N  N  E  Y  S  R  *  F  G  *  C  *  N  Y  *  *  E  *  S  L  S  R  I  R  R  *  *  A  F  S  S  E  *  S  I  R  L  S  F  C  A  L  C  *  S  Y  *  R  I  *  R  S  G  R  I  *  R  R  R  N  I  R  R  V  T  Q  E  V  *  *  F  Y  K  E  D  *  E  R  D  Q  *  K  E  L  I  D  G  K  K  K  L  T  N  K  G  V  S  I  L  L  *  H  I  I  N  H  V  F  T  P  F  *  L  V  D  I  *  Y  L  F  </first_frame>
            <second_frame>  K  K  K  K  I  P  N  T  S  Q  E  N  S  K  K  V  F  F  F  S  N  F  K  K  M  E  N  M  S  L  N  S  Q  F  Y  F  L  K  N  A  M  R  I  L  L  P  L  S  V  F  S  L  M  F  S  Q  Y  Y  L  I  F  P  S  L  F  N  S  F  N  E  F  S  S  N  F  S  I  Q  L  F  T  Y  S  S  E  R  N  Y  I  F  L  L  C  N  G  I  L  V  F  I  I  K  N  S  G  L  I  S  T  T  N  I  S  D  N  H  H  H  H  Y  P  K  E  S  K  I  Q  E  T  N  I  E  S  L  E  K  V  V  E  I  E  K  Q  E  K  E  E  E  I  E  T  M  N  I  Q  D  D  L  V  S  V  E  T  I  D  E  N  E  V  Y  Q  E  S  E  D  S  K  L  F  L  Q  N  N  Q  L  D  Y  H  S  V  R  C  V  E  V  I  E  E  F  E  E  V  E  E  F  E  E  E  E  T  L  E  E  L  H  K  K  C  D  D  F  I  K  R  I  K  K  E  I  N  R  K  N  *  L  M  E  K  K  N  *  P  I  R  G  L  A  S  C  Y  D  I  *  L  T  M  Y  S  L  L  F  N  *  S  I  F  D  I  Y  F </second_frame>
            <third_frame>   K  K  K  K  S  Q  T  L  L  K  K  T  L  K  K  F  F  F  F  P  I  S  R  K  W  K  I  *  A  *  I  A  N  F  I  F  *  K  M  Q  *  E  F  Y  F  H  F  Q  Y  F  H  *  C  F  L  N  I  I  *  Y  F  H  L  F  L  I  H  L  M  N  F  L  L  I  F  L  F  N  F  S  P  I  A  Q  K  E  T  I  F  F  F  F  V  M  E  F  L  F  S  *  S  R  I  Q  D  *  L  V  L  L  I  F  L  I  I  I  I  I  I  I  P  K  N  P  K  F  K  K  Q  I  *  S  L  L  K  K  L  L  K  L  K  N  K  K  K  K  K  K  L  K  Q  *  I  F  K  M  I  W  L  V  L  K  L  L  M  R  M  K  F  I  K  N  P  K  I  V  S  F  F  F  R  I  I  N  *  I  I  I  L  C  V  V  L  K  L  L  K  N  L  K  K  W  K  N  L  K  K  K  K  H  *  K  S  Y  T  R  S  V  M  I  L  *  R  G  L  R  K  R  S  I  E  R  I  D  *  W  K  K  K  I  N  Q  *  G  G  *  H  L  A  M  T  Y  N  *  P  C  I  H  S  F  L  T  S  R  Y  L  I  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49269" stop="49970"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKKIPNTSQENSKKVFFFSNFKKMENMSLNSQFYFLKNAMRILLPLSVFSLMFSQYYLIFPSLFNSFNEFSSNFSIQLFTYSSERNYIFLLCNGILVFIIKNSGLISTTNISDNHHHHYPKESKIQETNIESLEKVVEIEKQEKEEEIETMNIQDDLVSVETIDENEVYQESEDSKLFLQNNQLDYHSVRCVEVIEEFEEVEEFEEEETLEELHKKCDDFIKRIKKEINRKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="60964" PGL_stop="61690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60964" e_stop="61690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="60964" e_stop="61690" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60964" stop="61449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61390" stop="61690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGTAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGATCCTTCCCGGCCAACCCCGGATCACCACCGCCCGTGCCATCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACATTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCCACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCTGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATATGGCAGGAAACCATTCGCCTGGTACTGTCACTCGTCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTACCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGACTCAAGCAAACCCCCCGTGCGTGGTACACACGTCTGAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  *  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  V  L  D  P  S  R  P  T  P  D  H  H  R  P  C  H  P  P  I  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  H  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  L  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  Y  G  R  K  P  F  A  W  Y  C  H  S  S  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  Y  L  N  M  F  A  N  S  R  S  L  C  M  D  S  S  K  P  P  V  R  G  T  H  V  *  K  R  </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  I  L  P  G  Q  P  R  I  T  T  A  R  A  I  P  Q  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  I  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  P  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  *  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  M  A  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  T  S  T  C  L  Q  T  P  E  V  S  V  W  T  Q  A  N  P  P  C  V  V  H  T  S  E  N  V </second_frame>
            <third_frame>   T  H  N  T  P  V  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  A  N  P  G  S  P  P  P  V  P  S  P  N  T  H  P  M  L  T  R  G  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  H  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  W  Q  E  T  I  R  L  V  L  S  L  V  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  L  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  T  P  R  A  W  Y  T  R  L  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0021D10.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60966" stop="61688"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPVTTTHTHNQPEPPHTHNISSPIRFGSFPANPGSPPPVPSPNTHPMLTRGKAGIFKPKTFQATILPNTPLPDSEPTTHSVASKNAYWRHAMDDEFKALTDQKTWVLVPKPHGRHPVGCKWVYKIKHNADGSISRYKARLVAKGYNQEYGLDYSETFSPVIWQETIRLVLSLVVRNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVDPRLPQHVCKLQKSLYGLKQTPRAWYTRLKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 61 chains have been computed
$ 
$ memory statistics:
$ 20896 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 2089 bytes was the average size of a spliced alignment
$ 12616 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1802 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 83 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-03 15:04:09
-->
