<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-23 02:10:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747577" ref_strand="+" ref_description="SGN-E747577 [GI|4160440]">
      <seq>cctctgtccttccccccaggtcccctttttttcctttctctctctcctttatttctcttttcataagcatattctttctctctctagggttttcactttcacctgaaatagtgttgttaaattgaatgatatgttaggatcctttggttcttcatcatctcaatctcaccctcatcatgatgaagaatcttctgatcatcatcaacagcgtagattcaccgctactgctacaactatcaccaccaccaccatcactacctcaccagctattcaaatccgccagctactcattagctgtgcggagttgatttcgcagtccgatttctcggccgcgaaaagactccttactatattatcaactaactcatctccttttggtgattcaactgaacggttagtccatcaatttactcgcgcactttcccttcgtctcaaccgctatatatcgtcaaccaccaatcatttcatgacacctgttgaaacaactccaactgattcttcttcttcgtcatcattagctctaattcaatcatcatatctatctctaaaccaagttacccctttcataaggtttactcaattaaccgctaatcaagcgattttagaagcgattaacggtaatcatcaagcaatccacatcgttgatttcgacattaatcacggggttcaatggccaccgttaatgcaagcactagctgatcgttaccctgctcccactcttcgaatcaccggtactggaaatgaccttgatacccttcgtagaacaggtgatcgtttagctaaatttgctcactcattagggttgagatttcaattccatcctctttatatagccaataataaccacgatcacgatgaagatccttctattatttcctccattgtactactccctgatgaaaccctagctatcaactgtgttttctacctccaccgccttttaaaagaccgcgaaaagttaaggatttttttgcatagggttaagtcaatgaaccctaaaattgttacaatcgcggagaaggaagcaaatcataaccatcctctttttttacaaagattcatcgaggcgttggattattatacagctgtgtttgattcactggaagctacattgccaccgggtagtcgagagaggatgacagttgaacaagtgtggtttgggagagagattgttgatatcgttgcgatggaaggagataaaaggaaagaaagacatgaaaggtttagatcatgggaagttatgttgaggagttgtggatttagtaatgttgctttaagcccttttgcattatcacaagctaagcttcttttgagacttcattatccttctgaaggctatcaactcggagtttcgagtaattctttcttcttaggttggcaaaatcaaccccttttctccatctcgtcttggcgttgagaaaaactatcaaatagccaacttcagagggtaattaagactactgatagtttaggagggatctgaagaaaacgcgtggagtgaaaaccctaaataaccagattttctaatgaagttgtagtagtagaaatttgcatggtgaagaacaatattgaagaggtattgaaatttcatgttttttttgttttacttattgatatgaatgttttaaaatttttaacatagaggactaggttgatgatatatagtatttaagttaactagtctttgtataacgcaagatcttgatcaacttatttttatttttaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="3329" stop="1001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3029" g_stop="1301" g_length="1729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1729" r_length="1729" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E747577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3029" e_stop="1301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTCCTTCCCCCCAGGTCCCCTTTTTTTCCTTTCTCTCTCTCCTTTATTTCTCTTTTCATAAGCATATTCTTTCTCTCTCTAGGGTTTTCACTTTCACCTGAAATAGTGTTGTTAAATTGAATGATATGTTAGGATCCTTTGGTTCTTCATCATCTCAATCTCACCCTCATCATGATGAAGAATCTTCTGATCATCATCAACAGCGTAGATTCACCGCTACTGCTACAACTATCACCACCACCACCATCACTACCTCACCAGCTATTCAAATCCGCCAGCTACTCATTAGCTGTGCGGAGTTGATTTCGCAGTCCGATTTCTCGGCCGCGAAAAGACTCCTTACTATATTATCAACTAACTCATCTCCTTTTGGTGATTCAACTGAACGGTTAGTCCATCAATTTACTCGCGCACTTTCCCTTCGTCTCAACCGCTATATATCGTCAACCACCAATCATTTCATGACACCTGTTGAAACAACTCCAACTGATTCTTCTTCTTCGTCATCATTAGCTCTAATTCAATCATCATATCTATCTCTAAACCAAGTTACCCCTTTCATAAGGTTTACTCAATTAACCGCTAATCAAGCGATTTTAGAAGCGATTAACGGTAATCATCAAGCAATCCACATCGTTGATTTCGACATTAATCACGGGGTTCAATGGCCACCGTTAATGCAAGCACTAGCTGATCGTTACCCTGCTCCCACTCTTCGAATCACCGGTACTGGAAATGACCTTGATACCCTTCGTAGAACAGGTGATCGTTTAGCTAAATTTGCTCACTCATTAGGGTTGAGATTTCAATTCCATCCTCTTTATATAGCCAATAATAACCACGATCACGATGAAGATCCTTCTATTATTTCCTCCATTGTACTACTCCCTGATGAAACCCTAGCTATCAACTGTGTTTTCTACCTCCACCGCCTTTTAAAAGACCGCGAAAAGTTAAGGATTTTTTTGCATAGGGTTAAGTCAATGAACCCTAAAATTGTTACAATCGCGGAGAAGGAAGCAAATCATAACCATCCTCTTTTTTTACAAAGATTCATCGAGGCGTTGGATTATTATACAGCTGTGTTTGATTCACTGGAAGCTACATTGCCACCGGGTAGTCGAGAGAGGATGACAGTTGAACAAGTGTGGTTTGGGAGAGAGATTGTTGATATCGTTGCGATGGAAGGAGATAAAAGGAAAGAAAGACATGAAAGGTTTAGATCATGGGAAGTTATGTTGAGGAGTTGTGGATTTAGTAATGTTGCTTTAAGCCCTTTTGCATTATCACAAGCTAAGCTTCTTTTGAGACTTCATTATCCTTCTGAAGGCTATCAACTCGGAGTTTCGAGTAATTCTTTCTTCTTAGGTTGGCAAAATCAACCCCTTTTCTCCATCTCGTCTTGGCGTTGAGAAAAACTATCAAATAGCCAACTTCAGAGGGTAATTAAGACTACTGATAGTTTAGGAGGGATCTGAAGAAAACGCGTGGAGTGAAAACCCTAAATAACCAGATTTTCTAATGAAGTTGTAGTAGTAGAAATTTGCATGGTGAAGAACAATATTGAAGAGGTATTGAAATTTCATGTTTTTTTTGTTTTACTTATTGATATGAATGTTTTAAAATTTTTAACATAGAGGACTAGGTTGATGATATATAGTATTTAAGTTAACTAGTCTTTGTATAACGCAAGATCTTGATCAACTTATTTTTATTTTTAATTA</genome_strand>
        <mrna_strand>CCTCTGTCCTTCCCCCCAGGTCCCCTTTTTTTCCTTTCTCTCTCTCCTTTATTTCTCTTTTCATAAGCATATTCTTTCTCTCTCTAGGGTTTTCACTTTCACCTGAAATAGTGTTGTTAAATTGAATGATATGTTAGGATCCTTTGGTTCTTCATCATCTCAATCTCACCCTCATCATGATGAAGAATCTTCTGATCATCATCAACAGCGTAGATTCACCGCTACTGCTACAACTATCACCACCACCACCATCACTACCTCACCAGCTATTCAAATCCGCCAGCTACTCATTAGCTGTGCGGAGTTGATTTCGCAGTCCGATTTCTCGGCCGCGAAAAGACTCCTTACTATATTATCAACTAACTCATCTCCTTTTGGTGATTCAACTGAACGGTTAGTCCATCAATTTACTCGCGCACTTTCCCTTCGTCTCAACCGCTATATATCGTCAACCACCAATCATTTCATGACACCTGTTGAAACAACTCCAACTGATTCTTCTTCTTCGTCATCATTAGCTCTAATTCAATCATCATATCTATCTCTAAACCAAGTTACCCCTTTCATAAGGTTTACTCAATTAACCGCTAATCAAGCGATTTTAGAAGCGATTAACGGTAATCATCAAGCAATCCACATCGTTGATTTCGACATTAATCACGGGGTTCAATGGCCACCGTTAATGCAAGCACTAGCTGATCGTTACCCTGCTCCCACTCTTCGAATCACCGGTACTGGAAATGACCTTGATACCCTTCGTAGAACAGGTGATCGTTTAGCTAAATTTGCTCACTCATTAGGGTTGAGATTTCAATTCCATCCTCTTTATATAGCCAATAATAACCACGATCACGATGAAGATCCTTCTATTATTTCCTCCATTGTACTACTCCCTGATGAAACCCTAGCTATCAACTGTGTTTTCTACCTCCACCGCCTTTTAAAAGACCGCGAAAAGTTAAGGATTTTTTTGCATAGGGTTAAGTCAATGAACCCTAAAATTGTTACAATCGCGGAGAAGGAAGCAAATCATAACCATCCTCTTTTTTTACAAAGATTCATCGAGGCGTTGGATTATTATACAGCTGTGTTTGATTCACTGGAAGCTACATTGCCACCGGGTAGTCGAGAGAGGATGACAGTTGAACAAGTGTGGTTTGGGAGAGAGATTGTTGATATCGTTGCGATGGAAGGAGATAAAAGGAAAGAAAGACATGAAAGGTTTAGATCATGGGAAGTTATGTTGAGGAGTTGTGGATTTAGTAATGTTGCTTTAAGCCCTTTTGCATTATCACAAGCTAAGCTTCTTTTGAGACTTCATTATCCTTCTGAAGGCTATCAACTCGGAGTTTCGAGTAATTCTTTCTTCTTAGGTTGGCAAAATCAACCCCTTTTCTCCATCTCGTCTTGGCGTTGAGAAAAACTATCAAATAGCCAACTTCAGAGGGTAATTAAGACTACTGATAGTTTAGGAGGGATCTGAAGAAAACGCGTGGAGTGAAAACCCTAAATAACCAGATTTTCTAATGAAGTTGTAGTAGTAGAAATTTGCATGGTGAAGAACAATATTGAAGAGGTATTGAAATTTCATGTTTTTTTTGTTTTACTTATTGATATGAATGTTTTAAAATTTTTAACATAGAGGACTAGGTTGATGATATATAGTATTTAAGTTAACTAGTCTTTGTATAACGCAAGATCTTGATCAACTTATTTTTATTTTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744727" ref_strand="+" ref_description="SGN-E744727 [GI|13620217]">
      <seq>aaaatggcaggaaatcgtggaattaggtttcggtatatgtttcatctatggccggaactgccaagagacaccataccggagaggaaggaggagcaggaagctccgatgacgtttttgagccgtcaatagataaatttccagtcgatgtaataagttgtatattggaaaaactggatttggaatctgtctgcagcgccgcttgtgtctctcagactctcagttccgccgccgcacaagttttcacttctctatcgtctctcgatctttcgggacattatttggatgaagaaactctagaacaagtagcgcgtagggtccaaggagccaagagtttaactattgattgcctccaactgaagaatggcacctccattttcaatattcttggtgaacatatcgaagaattgagtttgctcaaatgttccagagtgtcttaccatattcttagtgcaattagagaaaggtgccccaacttaaggtccttgctgattgaatttgccgggagtgaagatccacaacttttcgagaacaaacttgcagaaatgctccaaaagttgaccttgttagaggtgctgtccataaaaatccgagggacctactttgatgtatttgatatacgacctcttgaactatttctgcccaagagtttaagaaaattgaagttacagcaaacggagggagacaaatttgtccattggttagaaaagatcagagatatcccttggttcaacttgcaaagcttatctcttgtcttggacgttatatcagatagtcttctcaggacagttgtgaattctcttcctcttttggttgagctggatcttgaagacagaccttttatggatccaacgatagaggacttgaccaacgttggactgcagcgtgtgcagtcctgcaagcatctaattaccctcgcaattgttcgaagtagtatgaattatcgcactgcatttaggagggtaaacaatatgggcatgttccttctttctgaaggttgtggaaggttggaatcagtgaaacttggtgggtttgcaaatgttactgatgctgggttttcgacaattctgaactcatgccggaaactgaagaaacttgaagtgttgaattcatgtctattatcagacttggcgtttcataatatgagaggagttgcaaggtccctaattgaattaaggttgttatcatgcaggcttctaactagtgaagctttggaaggtttgtccttgttgagtaagttggaggtacttgacacaagtgggtgcagaagcattggaaacccctgtctctttgtcatatcaagagttactacactcacaaaactaaacttagcagaagctgatatcaccgacaagggtcttgctttgcttggtatgggaaacttgggcattacacagttgtgcatcagaggctgtaagagagtaactgataagggaattgagcgtttattttgtgctgaaggaaaaattggcaagacgttatcattgttggatgtcagtcgcatgcccggaataactgatgcagctatctttaccattgcatctgctgctaaagcattaactgatttatctctaaggtactgctttcatgtgacagatgctggtgtgaagatgttgttggatagaccaaatcacaaggttagtctactgcaaaagcttgatctttataaatgtcgcggtctgtctggtgattggataatgtcttctttctgtggtttgcgctggcttggtgttggaggtactctgttagtcaataaaagagacgatttctccacaatatgcaatgtgcgaccctggctggttgtgtgttttgatggctgtgaatttgggtgccatgatggttggcaatttcatcggatcattattcatcattgacagaaggcggattttgtaagaggagcagatcaagataggctggagacgcgaagttcctttctacatactagtaacatttcatattttgagtagcacaagttggtgatgcatattgggtttgctgcaaccactcttttgtgtctctatttgtgcttgaactagacttttgtttattttattttatagccttttctcctagtttaggcatatgcattattgtgcttgctctctaccttttgaattacaaacaccctgttaaaccgttttaaatgaaccatgattattgatcaattatagttttatacttgttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="11140" stop="7012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10840" g_stop="10572" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10571" i_stop="9973" i_length="599">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9972" g_stop="9764" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="478" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9763" i_stop="9155" i_length="609">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9154" g_stop="9064" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="569" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9063" i_stop="8928" i_length="136">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8927" g_stop="7312" g_length="1616"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="2185" r_length="1616" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E744727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2185</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10840" e_stop="10572"/>
          <exon e_start="9972" e_stop="9764"/>
          <exon e_start="9154" e_stop="9064"/>
          <exon e_start="8927" e_stop="7312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGGAAATCGTGGAATTAGGTTTCGGTATATGTTTCATCTATGGCCGGAACTGCCAAGAGACACCATACCGGAGAGGAAGGAGGAGCAGGAAGCTCCGATGACGTTTTTGAGCCGTCAATAGATAAATTTCCAGTCGATGTAATAAGTTGTATATTGGAAAAACTGGATTTGGAATCTGTCTGCAGCGCCGCTTGTGTCTCTCAGACTCTCAGTTCCGCCGCCGCACAAGTTTTCACTTCTCTATCGTCTCTCGATCTTTCGGTACGTCTCCTAATTGAATGCCCTAATTTTATTGATGTAGTTAGATAAAATGAGTTAATTAGCAGCCTGATTGAGTATAATACATATGAAATTGGCAAATTAACAAACACTAGGTGTTACTTGCTTTATGTTGCTGGTGGGAGGTGATATGTATTGGTGCACGAAAGTTGTCCCGGACACCGCGGTTATCAAAAGATAGTAATTTCAATTCAATCATGTCGAGTTAATGTTGAGTGAAATATGTTCTTCCTAGATTATCTAAAATCTTTTGTTGGATTTTATATACTTGATTGATTATTACGAAAGGAAATGAGTGTGAATAGAGTGGATTAAAACTCCATGACTTAAATGTAGAGGAGATCATTTAATTTAGGATGTAGACGTAGTTGATTGATTATCTTAAGATTGCTTTGACTGCGAAAATTTATTCTGAGTTTATTGCAGGTTGATTTAGATTGACCTGAATCTTAATAGAGTAAAATGCATGTGGAGAATGCGTATTGATGCATAATTGATTTTTCATTTAACCATCTTTAGTTATGCTTATGCAATTTCTACATCTAGGATGAAATTTTAATACTAGTATCTTTGATTTACAGGGACATTATTTGGATGAAGAAACTCTAGAACAAGTAGCGCGTAGGGTCCAAGGAGCCAAGAGTTTAACTATTGATTGCCTCCAACTGAAGAATGGCACCTCCATTTTCAATATTCTTGGTGAACATATCGAAGAATTGAGTTTGCTCAAATGTTCCAGAGTGTCTTACCATATTCTTAGTGCAATTAGAGAAAGGTGCCCCAACTTAAGGTATTCTGCTATGTCAAACTTCATTTTTGCTACTTTTGACTATTCGCATGTATAGGTAATTGTTATAAGATGCTTCACTGCTTTATAAATTGTTGTCGTTGATGTTAAAACTATACAAGTGGTACTAGTTGCAATCATTTTATCAGGGCTTAGAAGGCATCAATTGCCTCCATTAATGGATGTTCAGAATGTTGTTATCCTGAAATTCTCTCTATAGAAAATGGATTTTTTTTAGTTCTAATAGTTAACTTGAGCCATTACATTACAACTTGCTGAAGCTGATTTGTATTTTTCCCCCGATATCTTAAGCAGATCTGTTAATTTGGGAATCAATTCATCTATCGGCTGAATTTGATTTTTTTCTTTGTTGACCCTGGTGTCTGAATTTCTTTAGGTTGTTTGGGTATAGAAAATTGCAAACTGTATTAGCTTTTGTGCTTGGCATTGTTTAATTCCACTCTATATATCCATCTTCAGATGATGGAACAGGATAATTAAATCCATTTTGGTTACATCAACAATATGTTACATGTATAATCTTGTCATTTATCTCTAGATTTGTTTCCAATGTAAGTTTTCTTTTTTTCTCGTTTCCTTTTTCTGAATCAGGTCCTTGCTGATTGAATTTGCCGGGAGTGAAGATCCACAACTTTTCGAGAACAAACTTGCAGAAATGCTCCAAAAGTTGACCTTGTTAGAGGTGAAGTATACTCATCTTTCACATACCTTTCTCTTCTTCAATTTGTCCCTGGTGCCTCTTCAAGCTTATTACTCTTAAAACAAAGAGTTTCTTCTTTAGAGGGTCAGTTATATGATTTTTTCCCCCTTTTCTGCAGGTGCTGTCCATAAAAATCCGAGGGACCTACTTTGATGTATTTGATATACGACCTCTTGAACTATTTCTGCCCAAGAGTTTAAGAAAATTGAAGTTACAGCAAACGGAGGGAGACAAATTTGTCCATTGGTTAGAAAAGATCAGAGATATCCCTTGGTTCAACTTGCAAAGCTTATCTCTTGTCTTGGACGTTATATCAGATAGTCTTCTCAGGACAGTTGTGAATTCTCTTCCTCTTTTGGTTGAGCTGGATCTTGAAGACAGACCTTTTATGGATCCAACGATAGAGGACTTGACCAACGTTGGACTGCAGCGTGTGCAGTCCTGCAAGCATCTAATTACCCTCGCAATTGTTCGAAGTAGTATGAATTATCGCACTGCATTTAGGAGGGTAAACAATATGGGCATGTTCCTTCTTTCTGAAGGTTGTGGAAGGTTGGAATCAGTGAAACTTGGTGGGTTTGCAAATGTTACTGATGCTGGGTTTTCGACAATTCTGAACTCATGCCGGAAACTGAAGAAACTTGAAGTGTTGAATTCATGTCTATTATCAGACTTGGCGTTTCATAATATGAGAGGAGTTGCAAGGTCCCTAATTGAATTAAGGTTGTTATCATGCAGGCTTCTAACTAGTGAAGCTTTGGAAGGTTTGTCCTTGTTGAGTAAGTTGGAGGTACTTGACACAAGTGGGTGCAGAAGCATTGGAAACCCCTGTCTCTTTGTCATATCAAGAGTTACTACACTCACAAAACTAAACTTAGCAGAAGCTGATATCACCGACAAGGGTCTTGCTTTGCTTGGTATGGGAAACTTGGGCATTACACAGTTGTGCATCAGAGGCTGTAAGAGAGTAACTGATAAGGGAATTGAGCGTTTATTTTGTGCTGAAGGAAAAATTGGCAAGACGTTATCATTGTTGGATGTCAGTCGCATGCCCGGAATAACTGATGCAGCTATCTTTACCATTGCATCTGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTAGTTTAGGCATATGCATTATTGTGCTTGCTCTCTACCTTTTGAATTACAAACACCCTGTTAAACCGTTTTAAATGAACCATGATTATTGATCAATTATAGTTTTATACTTGTTATTT</genome_strand>
        <mrna_strand>AAAATGGCAGGAAATCGTGGAATTAGGTTTCGGTATATGTTTCATCTATGGCCGGAACTGCCAAGAGACACCATACCGGAGAGGAAGGAGGAGCAGGAAGCTCCGATGACGTTTTTGAGCCGTCAATAGATAAATTTCCAGTCGATGTAATAAGTTGTATATTGGAAAAACTGGATTTGGAATCTGTCTGCAGCGCCGCTTGTGTCTCTCAGACTCTCAGTTCCGCCGCCGCACAAGTTTTCACTTCTCTATCGTCTCTCGATCTTTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATTATTTGGATGAAGAAACTCTAGAACAAGTAGCGCGTAGGGTCCAAGGAGCCAAGAGTTTAACTATTGATTGCCTCCAACTGAAGAATGGCACCTCCATTTTCAATATTCTTGGTGAACATATCGAAGAATTGAGTTTGCTCAAATGTTCCAGAGTGTCTTACCATATTCTTAGTGCAATTAGAGAAAGGTGCCCCAACTTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTGCTGATTGAATTTGCCGGGAGTGAAGATCCACAACTTTTCGAGAACAAACTTGCAGAAATGCTCCAAAAGTTGACCTTGTTAGAG........................................................................................................................................GTGCTGTCCATAAAAATCCGAGGGACCTACTTTGATGTATTTGATATACGACCTCTTGAACTATTTCTGCCCAAGAGTTTAAGAAAATTGAAGTTACAGCAAACGGAGGGAGACAAATTTGTCCATTGGTTAGAAAAGATCAGAGATATCCCTTGGTTCAACTTGCAAAGCTTATCTCTTGTCTTGGACGTTATATCAGATAGTCTTCTCAGGACAGTTGTGAATTCTCTTCCTCTTTTGGTTGAGCTGGATCTTGAAGACAGACCTTTTATGGATCCAACGATAGAGGACTTGACCAACGTTGGACTGCAGCGTGTGCAGTCCTGCAAGCATCTAATTACCCTCGCAATTGTTCGAAGTAGTATGAATTATCGCACTGCATTTAGGAGGGTAAACAATATGGGCATGTTCCTTCTTTCTGAAGGTTGTGGAAGGTTGGAATCAGTGAAACTTGGTGGGTTTGCAAATGTTACTGATGCTGGGTTTTCGACAATTCTGAACTCATGCCGGAAACTGAAGAAACTTGAAGTGTTGAATTCATGTCTATTATCAGACTTGGCGTTTCATAATATGAGAGGAGTTGCAAGGTCCCTAATTGAATTAAGGTTGTTATCATGCAGGCTTCTAACTAGTGAAGCTTTGGAAGGTTTGTCCTTGTTGAGTAAGTTGGAGGTACTTGACACAAGTGGGTGCAGAAGCATTGGAAACCCCTGTCTCTTTGTCATATCAAGAGTTACTACACTCACAAAACTAAACTTAGCAGAAGCTGATATCACCGACAAGGGTCTTGCTTTGCTTGGTATGGGAAACTTGGGCATTACACAGTTGTGCATCAGAGGCTGTAAGAGAGTAACTGATAAGGGAATTGAGCGTTTATTTTGTGCTGAAGGAAAAATTGGCAAGACGTTATCATTGTTGGATGTCAGTCGCATGCCCGGAATAACTGATGCAGCTATCTTTACCATTGCATCTGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTCTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTAGTTTAGGCATATGCATTATTGTGCTTGCTCTCTACCTTTTGAATTACAAACACCCTGTTAAACCGTTTTAAATGAACCATGATTATTGATCAATTATAGTTTTATACTTGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745676" ref_strand="+" ref_description="SGN-E745676 [GI|47105194]">
      <seq>aatctaaaatttgtatgtacatgagtatattttttgaatttcgctatacggattcgccatgaaaaatagggaaacttatgaagcaaatgatgaattgatcgattttttttgtactttttgctggaaaaatggcaggaaatcgtggaattaggtttcggtatatgtttcatctatggccggaactgccaagagacaccataccggagaggaaggaggagcaggaagctccgatgacgtttttgagccgtcaatagataaatttccagtcgatgtaataagttgtatattggaaaaactggatttggaatctgtctgcagcgccgcttgtgtctctcagactctcagttccgccgccgcacaagttttcacttctctatcgtctctcgatctttcgggacattatttggatgaagaaactctagaacaagtagcgcgtagggtccaaggagccaagagtttaactattgattgcctccaactgaagaatggcacctccattttcaatattcttggtgaacatatcgaagaattgagtttgctcaaatgttccagagtgtcttaccatattcttagtgcaattagagaaaggtgccccaacttaaggtccttgctgattgaatttgccgggagtgaagatccacaacttttcgagaacaaacttgcagaaatgctccaaaagttgaccttgttagaggtgctgtccataaaaatccgagggacctactttgatgtatttgatatacgacctcttgaactatttctgcccaagagtttaagaaaattgaagttacagcaaacggagggagacaaatttgtccattggttagaaaagatcagagatatcccttggttcaacttgcaaagcttatctcttgtcttggacgttatatcagatagtcttctcaggacagttgtgaattctcttcctcttttggttgagctggatcttgaagacagaccttttatggatccaacgatagaggacttgaccaacgttggactgcagcgtgtgcagtcctgcaagcatctaattaccctcgcaattgttcgaagtagtatgaattatcgcactgcatttaggagggtaaacaatatgggcatgttccttctttctgaaggttgtggaaggttggaatcagtgaaacttggtgggtttgcaaatgttactgatgctgggttttcgacaattctgaactcatgccggaaactgaagaaacttgaagtgttgaattcatgtctattatcagacttggcgtttcataatatgagaggagttgcaaggtccctaattgaattaaggttgttatcatgcaggcttctaactagtgaagctttggaaggtttgtccttgttgagtaagttggaggtacttgacacaagtgggtgcagaagcattggaaacccctgtctctttgtcatatcaagagttactacactcacaaaactaaacttagcagaagctgatatcaccgacaagggtcttgctttgcttggtatgggaaacttgggcattacacagttgtgcatcagaggctgtaagagagtaactgataagggaattgagcgtttattttgtgctgaaggaaaaattggcaagacgttatcattgttggatgtcagtcgcatgcccggaataactgatgcagctatctttaccattgcatctgctgctaaagcattaactgatttatctctaaggtactgctttcatgtgacagatgctggtgtgaagatgttgttggatagaccaaatcacaaggttagtctactgcaaaagcttgatctttataaatgtcgcggtctgtctggtgattggataatgtcttctttctgtggtttgcgctggcttggtgttggaggtactctgttagtcaataaaagagacgatttctccacaatatgcaatgtgcgaccctggctggttgtgtgttttgatggctgtgaatttgggtgccatgatggttggcaatttcatcggatcattattcatcattgacagaaggcggattttgtaagaggagcagatcaagataggctggagacgcgaagttcctttttacatactagtaacatttcatattttgagtagcacaagttggtgatgcatattgggtttgctgcaaccactcttttgtgtctctatttgtgcttgaactagacttttgtttattttattttatagccttttctcctagtttaggcatatgcattattgtgcttgctctctaccttttgaattacaaacaccctgttaaaccgttttaaatgaaccatgattattgatcaattatagttttatacttgttacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="11265" stop="7015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10965" g_stop="10572" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10571" i_stop="9973" i_length="599">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9972" g_stop="9764" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="603" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9763" i_stop="9155" i_length="609">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9154" g_stop="9064" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="694" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9063" i_stop="8928" i_length="136">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8927" g_stop="7316" g_length="1612"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="2306" r_length="1612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2307" polyA_stop="2324"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E745676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2306</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10965" e_stop="10572"/>
          <exon e_start="9972" e_stop="9764"/>
          <exon e_start="9154" e_stop="9064"/>
          <exon e_start="8927" e_stop="7316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTAAAATTTGTATGTACATGAGTATATTTTTTGAATTTCGCTATACGGATTCGCCATGAAAAATAGGGAAACTTATGAAGCAAATGATGAATTGATCGATTTTTTTTGTACTTTTTGCTGGAAAAATGGCAGGAAATCGTGGAATTAGGTTTCGGTATATGTTTCATCTATGGCCGGAACTGCCAAGAGACACCATACCGGAGAGGAAGGAGGAGCAGGAAGCTCCGATGACGTTTTTGAGCCGTCAATAGATAAATTTCCAGTCGATGTAATAAGTTGTATATTGGAAAAACTGGATTTGGAATCTGTCTGCAGCGCCGCTTGTGTCTCTCAGACTCTCAGTTCCGCCGCCGCACAAGTTTTCACTTCTCTATCGTCTCTCGATCTTTCGGTACGTCTCCTAATTGAATGCCCTAATTTTATTGATGTAGTTAGATAAAATGAGTTAATTAGCAGCCTGATTGAGTATAATACATATGAAATTGGCAAATTAACAAACACTAGGTGTTACTTGCTTTATGTTGCTGGTGGGAGGTGATATGTATTGGTGCACGAAAGTTGTCCCGGACACCGCGGTTATCAAAAGATAGTAATTTCAATTCAATCATGTCGAGTTAATGTTGAGTGAAATATGTTCTTCCTAGATTATCTAAAATCTTTTGTTGGATTTTATATACTTGATTGATTATTACGAAAGGAAATGAGTGTGAATAGAGTGGATTAAAACTCCATGACTTAAATGTAGAGGAGATCATTTAATTTAGGATGTAGACGTAGTTGATTGATTATCTTAAGATTGCTTTGACTGCGAAAATTTATTCTGAGTTTATTGCAGGTTGATTTAGATTGACCTGAATCTTAATAGAGTAAAATGCATGTGGAGAATGCGTATTGATGCATAATTGATTTTTCATTTAACCATCTTTAGTTATGCTTATGCAATTTCTACATCTAGGATGAAATTTTAATACTAGTATCTTTGATTTACAGGGACATTATTTGGATGAAGAAACTCTAGAACAAGTAGCGCGTAGGGTCCAAGGAGCCAAGAGTTTAACTATTGATTGCCTCCAACTGAAGAATGGCACCTCCATTTTCAATATTCTTGGTGAACATATCGAAGAATTGAGTTTGCTCAAATGTTCCAGAGTGTCTTACCATATTCTTAGTGCAATTAGAGAAAGGTGCCCCAACTTAAGGTATTCTGCTATGTCAAACTTCATTTTTGCTACTTTTGACTATTCGCATGTATAGGTAATTGTTATAAGATGCTTCACTGCTTTATAAATTGTTGTCGTTGATGTTAAAACTATACAAGTGGTACTAGTTGCAATCATTTTATCAGGGCTTAGAAGGCATCAATTGCCTCCATTAATGGATGTTCAGAATGTTGTTATCCTGAAATTCTCTCTATAGAAAATGGATTTTTTTTAGTTCTAATAGTTAACTTGAGCCATTACATTACAACTTGCTGAAGCTGATTTGTATTTTTCCCCCGATATCTTAAGCAGATCTGTTAATTTGGGAATCAATTCATCTATCGGCTGAATTTGATTTTTTTCTTTGTTGACCCTGGTGTCTGAATTTCTTTAGGTTGTTTGGGTATAGAAAATTGCAAACTGTATTAGCTTTTGTGCTTGGCATTGTTTAATTCCACTCTATATATCCATCTTCAGATGATGGAACAGGATAATTAAATCCATTTTGGTTACATCAACAATATGTTACATGTATAATCTTGTCATTTATCTCTAGATTTGTTTCCAATGTAAGTTTTCTTTTTTTCTCGTTTCCTTTTTCTGAATCAGGTCCTTGCTGATTGAATTTGCCGGGAGTGAAGATCCACAACTTTTCGAGAACAAACTTGCAGAAATGCTCCAAAAGTTGACCTTGTTAGAGGTGAAGTATACTCATCTTTCACATACCTTTCTCTTCTTCAATTTGTCCCTGGTGCCTCTTCAAGCTTATTACTCTTAAAACAAAGAGTTTCTTCTTTAGAGGGTCAGTTATATGATTTTTTCCCCCTTTTCTGCAGGTGCTGTCCATAAAAATCCGAGGGACCTACTTTGATGTATTTGATATACGACCTCTTGAACTATTTCTGCCCAAGAGTTTAAGAAAATTGAAGTTACAGCAAACGGAGGGAGACAAATTTGTCCATTGGTTAGAAAAGATCAGAGATATCCCTTGGTTCAACTTGCAAAGCTTATCTCTTGTCTTGGACGTTATATCAGATAGTCTTCTCAGGACAGTTGTGAATTCTCTTCCTCTTTTGGTTGAGCTGGATCTTGAAGACAGACCTTTTATGGATCCAACGATAGAGGACTTGACCAACGTTGGACTGCAGCGTGTGCAGTCCTGCAAGCATCTAATTACCCTCGCAATTGTTCGAAGTAGTATGAATTATCGCACTGCATTTAGGAGGGTAAACAATATGGGCATGTTCCTTCTTTCTGAAGGTTGTGGAAGGTTGGAATCAGTGAAACTTGGTGGGTTTGCAAATGTTACTGATGCTGGGTTTTCGACAATTCTGAACTCATGCCGGAAACTGAAGAAACTTGAAGTGTTGAATTCATGTCTATTATCAGACTTGGCGTTTCATAATATGAGAGGAGTTGCAAGGTCCCTAATTGAATTAAGGTTGTTATCATGCAGGCTTCTAACTAGTGAAGCTTTGGAAGGTTTGTCCTTGTTGAGTAAGTTGGAGGTACTTGACACAAGTGGGTGCAGAAGCATTGGAAACCCCTGTCTCTTTGTCATATCAAGAGTTACTACACTCACAAAACTAAACTTAGCAGAAGCTGATATCACCGACAAGGGTCTTGCTTTGCTTGGTATGGGAAACTTGGGCATTACACAGTTGTGCATCAGAGGCTGTAAGAGAGTAACTGATAAGGGAATTGAGCGTTTATTTTGTGCTGAAGGAAAAATTGGCAAGACGTTATCATTGTTGGATGTCAGTCGCATGCCCGGAATAACTGATGCAGCTATCTTTACCATTGCATCTGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTAGTTTAGGCATATGCATTATTGTGCTTGCTCTCTACCTTTTGAATTACAAACACCCTGTTAAACCGTTTTAAATGAACCATGATTATTGATCAATTATAGTTTTATACTTGTT</genome_strand>
        <mrna_strand>AATCTAAAATTTGTATGTACATGAGTATATTTTTTGAATTTCGCTATACGGATTCGCCATGAAAAATAGGGAAACTTATGAAGCAAATGATGAATTGATCGATTTTTTTTGTACTTTTTGCTGGAAAAATGGCAGGAAATCGTGGAATTAGGTTTCGGTATATGTTTCATCTATGGCCGGAACTGCCAAGAGACACCATACCGGAGAGGAAGGAGGAGCAGGAAGCTCCGATGACGTTTTTGAGCCGTCAATAGATAAATTTCCAGTCGATGTAATAAGTTGTATATTGGAAAAACTGGATTTGGAATCTGTCTGCAGCGCCGCTTGTGTCTCTCAGACTCTCAGTTCCGCCGCCGCACAAGTTTTCACTTCTCTATCGTCTCTCGATCTTTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATTATTTGGATGAAGAAACTCTAGAACAAGTAGCGCGTAGGGTCCAAGGAGCCAAGAGTTTAACTATTGATTGCCTCCAACTGAAGAATGGCACCTCCATTTTCAATATTCTTGGTGAACATATCGAAGAATTGAGTTTGCTCAAATGTTCCAGAGTGTCTTACCATATTCTTAGTGCAATTAGAGAAAGGTGCCCCAACTTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTGCTGATTGAATTTGCCGGGAGTGAAGATCCACAACTTTTCGAGAACAAACTTGCAGAAATGCTCCAAAAGTTGACCTTGTTAGAG........................................................................................................................................GTGCTGTCCATAAAAATCCGAGGGACCTACTTTGATGTATTTGATATACGACCTCTTGAACTATTTCTGCCCAAGAGTTTAAGAAAATTGAAGTTACAGCAAACGGAGGGAGACAAATTTGTCCATTGGTTAGAAAAGATCAGAGATATCCCTTGGTTCAACTTGCAAAGCTTATCTCTTGTCTTGGACGTTATATCAGATAGTCTTCTCAGGACAGTTGTGAATTCTCTTCCTCTTTTGGTTGAGCTGGATCTTGAAGACAGACCTTTTATGGATCCAACGATAGAGGACTTGACCAACGTTGGACTGCAGCGTGTGCAGTCCTGCAAGCATCTAATTACCCTCGCAATTGTTCGAAGTAGTATGAATTATCGCACTGCATTTAGGAGGGTAAACAATATGGGCATGTTCCTTCTTTCTGAAGGTTGTGGAAGGTTGGAATCAGTGAAACTTGGTGGGTTTGCAAATGTTACTGATGCTGGGTTTTCGACAATTCTGAACTCATGCCGGAAACTGAAGAAACTTGAAGTGTTGAATTCATGTCTATTATCAGACTTGGCGTTTCATAATATGAGAGGAGTTGCAAGGTCCCTAATTGAATTAAGGTTGTTATCATGCAGGCTTCTAACTAGTGAAGCTTTGGAAGGTTTGTCCTTGTTGAGTAAGTTGGAGGTACTTGACACAAGTGGGTGCAGAAGCATTGGAAACCCCTGTCTCTTTGTCATATCAAGAGTTACTACACTCACAAAACTAAACTTAGCAGAAGCTGATATCACCGACAAGGGTCTTGCTTTGCTTGGTATGGGAAACTTGGGCATTACACAGTTGTGCATCAGAGGCTGTAAGAGAGTAACTGATAAGGGAATTGAGCGTTTATTTTGTGCTGAAGGAAAAATTGGCAAGACGTTATCATTGTTGGATGTCAGTCGCATGCCCGGAATAACTGATGCAGCTATCTTTACCATTGCATCTGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTAGTTTAGGCATATGCATTATTGTGCTTGCTCTCTACCTTTTGAATTACAAACACCCTGTTAAACCGTTTTAAATGAACCATGATTATTGATCAATTATAGTTTTATACTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352791" ref_strand="+" ref_description="SGN-E352791 [cTOS-11-C11]">
      <seq>ggtgattggataatgtcttctttctgtggtttgcgctggcttggtgttggaggtactctgttagtcaataaaagagacgatttctccacaatatgcaatgtgcgaccctggctggttgtgtgttttgatggctgtgaatttgggtgccatgatggttggcaatttcatcggatcattattcatcattgacagaaggcggattttgtaagaggagcagatcaagataggctggagacgcgaagttcctttttacatactagtaacatttcatattttgagtagcacaagttggtgatgcatattgggtttgctgcaaccactcttttgtgtctctatttgtgcttgaactagacttttgtttattttattttatagccttttctcctagtttaggcatatgcattattgtgcttgctctctaccttttgaattacaaacaccctgttaaaccgttttaaatgaaccatgattattgatcaattaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="8114" stop="7030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7814" g_stop="7329" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E352791" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7814" e_stop="7329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTAGTTTAGGCATATGCATTATTGTGCTTGCTCTCTACCTTTTGAATTACAAACACCCTGTTAAACCGTTTTAAATGAACCATGATTATTGATCAATTATAG</genome_strand>
        <mrna_strand>GGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTAGTTTAGGCATATGCATTATTGTGCTTGCTCTCTACCTTTTGAATTACAAACACCCTGTTAAACCGTTTTAAATGAACCATGATTATTGATCAATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355512" ref_strand="+" ref_description="SGN-E355512 [cTOS-25-G12]">
      <seq>ggtgattggataatgtcttctttctgtggtttgcgctggcttggtgttggaggtactctgttagtcaataaaagagacgatttctccacaatatgcaatgtgcgaccctggctggttgtgtgttttgatggctgtgaatttgggtgccatgatggttggcaatttcatcggatcattattcatcattgacagaaggcggattttgtaagaggagcagatcaagataggctggagacgcgaagttcctttttacatactagtaacatttcatattttgagtagcacaagttggtgatgcatattgggtttgctgcaaccactcttttgtgtctctatttgtgcttgaactagacttttgtttattttattttatagccttttctcctagtttaggcatatgcattattgtgcttgctctctaccttttgaattacaaacaccctgttaaaccgttttaaatgaaccatgattattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="8114" stop="7038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7814" g_stop="7338" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E355512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7814" e_stop="7338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTAGTTTAGGCATATGCATTATTGTGCTTGCTCTCTACCTTTTGAATTACAAACACCCTGTTAAACCGTTTTAAATGAACCATGATTATTGAT</genome_strand>
        <mrna_strand>GGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTAGTTTAGGCATATGCATTATTGTGCTTGCTCTCTACCTTTTGAATTACAAACACCCTGTTAAACCGTTTTAAATGAACCATGATTATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349909" ref_strand="+" ref_description="SGN-E349909 [cTOS-3-E18]">
      <seq>tgctgctaaagcattaactgatttatctctaaggtactgctttcatgtgacagatgctggtgtgaagatgttgttggatagaccaaatcacaaggttagtctactgcaaaagcttgatctttataaatgtcgcggtctgtctggtgattggataatgtcttctttctgtggtttgcgctggcttggtgttggaggtactctgttagtcaataaaagagacgatttctccacaatatgcaatgtgcgaccctggctggttgtgtgttttgatggctgtgaatttgggtgccatgatggttggcaatttcatcggatcattattcatcattgacagaaggcggattttgtaagaggagcagatcaagataggctggagacgcgaagttcctttttacatactagtaacatttcatattttgagtagcacaagttggtgatgcatattgggtttgctgcaaccactcttttgtgtctctatttgtgcttgaactagacttttgtttattttattttatagccttttctcctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="8256" stop="7128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7956" g_stop="7428" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="552"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E349909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7956" e_stop="7428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTA</genome_strand>
        <mrna_strand>TGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352356" ref_strand="+" ref_description="SGN-E352356 [cTOS-9-M2]">
      <seq>tgctgctaaagcattaactgatttatctctaaggtactgctttcatgtgacagatgctggtgtgaagatgttgttggatagaccaaatcacaaggttagtctactgcaaaagcttgatctttataaatgtcgcggtctgtctggtgattggataatgtcttctttctgtggtttgcgctggcttggtgttggaggtactctgttagtcaataaaagagacgatttctccacaatatgcaatgtgcgaccctggctggttgtgtgttttgatggctgtgaatttgggtgccatgatggttggcaatttcatcggatcattattcatcattgacagaaggcggattttgtaagaggagcagatcaagataggctggagacgcgaagttcctttttacatactagtaacatttcatattttgagtagcacaagttggtgatgcatattgggtttgctgcaaccactcttttgtgtctctatttgtgcttgaaactagactttgtttattttattttatagccttttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="8256" stop="7130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7956" g_stop="7430" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E352356" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7956" e_stop="7430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTG-AACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCC</genome_strand>
        <mrna_strand>TGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAAACTAGAC-TTTGTTTATTTTATTTTATAGCCTTTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356591" ref_strand="+" ref_description="SGN-E356591 [cTOS-21-F3]">
      <seq>tgctgctaaagcattaactgatttatctctaaggtactgctttcatgtgacagatgctggtgtgaagatgttgttggatagaccaaatcacaaggttagtctactgcaaaagcttgatctttataaatgtcgcggtctgtctggtgattggataatgtcttctttctgtggtttgcgctggcttggtgttggaggtactctgttagtcaataaaagagacgatttctccacaatatgcaatgtgcgaccctggctggttgtgtgttttgatggctgtgaatttgggtgccatgatggttggcaatttcatcggatcattattcatcattgacagaaggcggattttgtaagaggagcagatcaagataggctggagacgcgaagttcctttttacatactagtaacatttcatattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="8256" stop="7235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7956" g_stop="7535" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E356591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7956" e_stop="7535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGT</genome_strand>
        <mrna_strand>TGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542783" ref_strand="+" ref_description="SGN-E542783 [TUS-64-E5]">
      <seq>gaagagagataaatacattgatagccttccaacttctggcagtagcagctggaaactatcaaccgttcccgagcctctaagcattaatgtggcaacatttgaaaaaccattgaggaagctgacctttggtcatcttctagaagcgaccaacgggttcagctctgagagcatgattggctctggaggttttggtgaagtctataaggctcagctgagagatggcagtactgtcgcaatcaagaagctcgtgcacgtaacaggtcaaggagacagagaattcatggctgaaatggagactattggaaaaatcaaacatagaaaccttgtccctttgttgggatattgcaagattggggaggaaaggcttctcgtatacgaatacatgaaatggggaagtcttgaatctgttcttcatgatggcgggaaaggagggatgtttcttgattggccagctagaaagaaaatcgcgataggatcagcaagagggttagcatttcttcaccacagctgcataccacacataattcatcgcgatatgaagtccagtaatgtacttttagacgaaaactttgaggcgcgagtttctgattttgggatggcaaggctggtaaatgctctggatactcatttaagtgtgagtacacttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="26705" stop="27954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27005" g_stop="27654" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E542783" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27005" e_stop="27654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAGATAAATACATTGATAGCCTTCCAACTTCTGGCAGTAGCAGCTGGAAACTATCAACCGTTCCCGAGCCTCTAAGCATTAATGTGGCAACATTTGAAAAACCATTGAGGAAGCTGACCTTTGGTCATCTTCTAGAAGCGACCAACGGGTTCAGCTCTGAGAGCATGATTGGCTCTGGAGGTTTTGGTGAAGTCTATAAGGCTCAGCTGAGAGATGGCAGTACTGTCGCAATCAAGAAGCTCGTGCACGTAACAGGTCAAGGAGACAGAGAATTCATGGCTGAAATGGAGACTATTGGAAAAATCAAACATAGAAACCTTGTCCCTTTGTTGGGATATTGCAAGATTGGGGAGGAAAGGCTTCTCGTATACGAATACATGAAATGGGGAAGTCTTGAATCTGTTCTTCATGATGGCGGGAAAGGAGGGATGTTTCTTGATTGGCCAGCTAGAAAGAAAATCGCGATAGGATCAGCAAGAGGGTTAGCATTTCTTCACCACAGCTGCATACCACACATAATTCATCGCGATATGAAGTCCAGTAATGTACTTTTAGACGAAAACTTTGAGGCGCGAGTTTCTGATTTTGGAATGGCAAGGCTGGTAAATGCTCTGGATACTCATTTAAGTGTGAGTACACTTGCTG</genome_strand>
        <mrna_strand>GAAGAGAGATAAATACATTGATAGCCTTCCAACTTCTGGCAGTAGCAGCTGGAAACTATCAACCGTTCCCGAGCCTCTAAGCATTAATGTGGCAACATTTGAAAAACCATTGAGGAAGCTGACCTTTGGTCATCTTCTAGAAGCGACCAACGGGTTCAGCTCTGAGAGCATGATTGGCTCTGGAGGTTTTGGTGAAGTCTATAAGGCTCAGCTGAGAGATGGCAGTACTGTCGCAATCAAGAAGCTCGTGCACGTAACAGGTCAAGGAGACAGAGAATTCATGGCTGAAATGGAGACTATTGGAAAAATCAAACATAGAAACCTTGTCCCTTTGTTGGGATATTGCAAGATTGGGGAGGAAAGGCTTCTCGTATACGAATACATGAAATGGGGAAGTCTTGAATCTGTTCTTCATGATGGCGGGAAAGGAGGGATGTTTCTTGATTGGCCAGCTAGAAAGAAAATCGCGATAGGATCAGCAAGAGGGTTAGCATTTCTTCACCACAGCTGCATACCACACATAATTCATCGCGATATGAAGTCCAGTAATGTACTTTTAGACGAAAACTTTGAGGCGCGAGTTTCTGATTTTGGGATGGCAAGGCTGGTAAATGCTCTGGATACTCATTTAAGTGTGAGTACACTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542740" ref_strand="+" ref_description="SGN-E542740 [TUS-64-D4]">
      <seq>gaagagagataaatacattgatagccttccaacttctggcagtagcagctggaaactatcaaccgttcccgagcctctaagcattaatgtggcaacatttgaaaaaccattgaggaagctgacctttggtcatcttctagaagcgaccaacgggttcagctctgagagcatgattggctctggaggttttggtgaagtctataaggctcagctgagagatggcagtactgtcgcaatcaagaagctcgtgcacgtaacaggtcaaggagacagagaattcatggctgaaatggagactattggaaagatcaaacatagaaaccttgtccctttgttgggatattgcaagattgggggaggaaaggcttctcgtatacgaatacatgaaatggggaaggcttgaatctgttcttcatgatgggcggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="26705" stop="27731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27005" g_stop="27431" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E542740" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27005" e_stop="27431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAGATAAATACATTGATAGCCTTCCAACTTCTGGCAGTAGCAGCTGGAAACTATCAACCGTTCCCGAGCCTCTAAGCATTAATGTGGCAACATTTGAAAAACCATTGAGGAAGCTGACCTTTGGTCATCTTCTAGAAGCGACCAACGGGTTCAGCTCTGAGAGCATGATTGGCTCTGGAGGTTTTGGTGAAGTCTATAAGGCTCAGCTGAGAGATGGCAGTACTGTCGCAATCAAGAAGCTCGTGCACGTAACAGGTCAAGGAGACAGAGAATTCATGGCTGAAATGGAGACTATTGGAAAAATCAAACATAGAAACCTTGTCCCTTTGTTGGGATATTGCAAGATT-GGGGAGGAAAGGCTTCTCGTATACGAATACATGAAATGGGGAAGTCTTGAATCTGTTCTTCATGATGGCGGGAAA</genome_strand>
        <mrna_strand>GAAGAGAGATAAATACATTGATAGCCTTCCAACTTCTGGCAGTAGCAGCTGGAAACTATCAACCGTTCCCGAGCCTCTAAGCATTAATGTGGCAACATTTGAAAAACCATTGAGGAAGCTGACCTTTGGTCATCTTCTAGAAGCGACCAACGGGTTCAGCTCTGAGAGCATGATTGGCTCTGGAGGTTTTGGTGAAGTCTATAAGGCTCAGCTGAGAGATGGCAGTACTGTCGCAATCAAGAAGCTCGTGCACGTAACAGGTCAAGGAGACAGAGAATTCATGGCTGAAATGGAGACTATTGGAAAGATCAAACATAGAAACCTTGTCCCTTTGTTGGGATATTGCAAGATTGGGGGAGGAAAGGCTTCTCGTATACGAATACATGAAATGGGGAAGGCTTGAATCTGTTCTTCATGATGGGCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301283" ref_strand="+" ref_description="SGN-E301283 [cLEW-24-B24]">
      <seq>aatacattgagggccttccaacttctggcagtagcagctggaaactatcaaccgttcccgagcctctaagcattaatgtggcaacatttgaaaaaccattgaggaagctgacctttggtcatcttctagaagcgaccaacgggttcagctctgagagcatgattggctctggaggttttggtgaagtctataaggctcagctgagagatggcagtactgtcgcaatcaagaagctcgtgcacgtaacaggtcaaggagacagagaattcatggctgaaatggagactattgtaaaaatcaaacatataaaccttgtccctttgttgggatattgcaagattggggagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="26716" stop="27664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27016" g_stop="27364" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E301283" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27016" e_stop="27364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACATTGATAGCCTTCCAACTTCTGGCAGTAGCAGCTGGAAACTATCAACCGTTCCCGAGCCTCTAAGCATTAATGTGGCAACATTTGAAAAACCATTGAGGAAGCTGACCTTTGGTCATCTTCTAGAAGCGACCAACGGGTTCAGCTCTGAGAGCATGATTGGCTCTGGAGGTTTTGGTGAAGTCTATAAGGCTCAGCTGAGAGATGGCAGTACTGTCGCAATCAAGAAGCTCGTGCACGTAACAGGTCAAGGAGACAGAGAATTCATGGCTGAAATGGAGACTATTGGAAAAATCAAACATAGAAACCTTGTCCCTTTGTTGGGATATTGCAAGATTGGGGAGGA</genome_strand>
        <mrna_strand>AATACATTGAGGGCCTTCCAACTTCTGGCAGTAGCAGCTGGAAACTATCAACCGTTCCCGAGCCTCTAAGCATTAATGTGGCAACATTTGAAAAACCATTGAGGAAGCTGACCTTTGGTCATCTTCTAGAAGCGACCAACGGGTTCAGCTCTGAGAGCATGATTGGCTCTGGAGGTTTTGGTGAAGTCTATAAGGCTCAGCTGAGAGATGGCAGTACTGTCGCAATCAAGAAGCTCGTGCACGTAACAGGTCAAGGAGACAGAGAATTCATGGCTGAAATGGAGACTATTGTAAAAATCAAACATATAAACCTTGTCCCTTTGTTGGGATATTGCAAGATTGGGGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542782" ref_strand="+" ref_description="SGN-E542782 [TUS-64-E5](-)">
      <seq>gaatacatgaaatggggaagtcttgaatctgttcttcatgatggcgggaaaggagggatgtttcttgattggccagctagaaagaaaatcgcgataggatcagcaagagggttagcatttcttcaccacagctgcataccacacataattcatcgcgatatgaagtccagtaatgtacttttagacgaaaactttgaggcgcgagtttctgattttggaatggcaaggctggtaaatgctctggatactcatttaagtgtgagtacacttgctggtactccaggttatgttcctccagagtactaccaaagtttcaggtgcaccgcaaaaggggacgtgtacagttatggtgtcatactgttggagcttctttcagggaaaaggccaatagatccccgtgtattcggtgatgataacaatcttgttggatgggcaaagcaacttcataacgataaacaaagtcacgagattcttgatcctgagctaataacaaatctatctggtgatgctgaactctatcattacttgaaagttgcatttgaatgccttgatgagaaatcttacaaaaggccaacaatgatacaagtgatgaccaagtttaaagaagtacaaactgattcagaaagcgatattcttgatggcatttcagtgaaaggttcttactcgaggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="27081" stop="28350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27381" g_stop="28059" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E542782" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27381" e_stop="28059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACATGAAATGGGGAAGTCTTGAATCTGTTCTTCATGATGGCGGGAAAGGAGGGATGTTTCTTGATTGGCCAGCTAGAAAGAAAATCGCGATAGGATCAGCAAGAGGGTTAGCATTTCTTCACCACAGCTGCATACCACACATAATTCATCGCGATATGAAGTCCAGTAATGTACTTTTAGACGAAAACTTTGAGGCGCGAGTTTCTGATTTTGGAATGGCAAGGCTGGTAAATGCTCTGGATACTCATTTAAGTGTGAGTACACTTGCTGGTACTCCAGGTTATGTTCCTCCAGAGTACTACCAAAGTTTCAGGTGCACCGCAAAAGGGGACGTGTACAGTTATGGTGTCATACTGTTGGAGCTTCTTTCAGGGAAAAGGCCAATAGATCCCCGTGTATTCGGTGATGATAACAATCTTGTTGGATGGGCAAAGCAACTTCATAACGATAAACAAAGTCACGAGATTCTTGATCCTGAGCTAATAACAAATCTATCTGGTGATGCTGAACTCTATCATTACTTGAAAGTTGCATTTGAATGCCTTGATGAGAAATCTTACAAAAGGCCAACAATGATACAAGTGATGACCAAGTTTAAAGAAGTACAAACTGATTCAGAAAGCGATATTCTTGATGGCATTTCAGTGAAAGGTTCTATACTCGAGGAATCGCAAG</genome_strand>
        <mrna_strand>GAATACATGAAATGGGGAAGTCTTGAATCTGTTCTTCATGATGGCGGGAAAGGAGGGATGTTTCTTGATTGGCCAGCTAGAAAGAAAATCGCGATAGGATCAGCAAGAGGGTTAGCATTTCTTCACCACAGCTGCATACCACACATAATTCATCGCGATATGAAGTCCAGTAATGTACTTTTAGACGAAAACTTTGAGGCGCGAGTTTCTGATTTTGGAATGGCAAGGCTGGTAAATGCTCTGGATACTCATTTAAGTGTGAGTACACTTGCTGGTACTCCAGGTTATGTTCCTCCAGAGTACTACCAAAGTTTCAGGTGCACCGCAAAAGGGGACGTGTACAGTTATGGTGTCATACTGTTGGAGCTTCTTTCAGGGAAAAGGCCAATAGATCCCCGTGTATTCGGTGATGATAACAATCTTGTTGGATGGGCAAAGCAACTTCATAACGATAAACAAAGTCACGAGATTCTTGATCCTGAGCTAATAACAAATCTATCTGGTGATGCTGAACTCTATCATTACTTGAAAGTTGCATTTGAATGCCTTGATGAGAAATCTTACAAAAGGCCAACAATGATACAAGTGATGACCAAGTTTAAAGAAGTACAAACTGATTCAGAAAGCGATATTCTTGATGGCATTTCAGTGAAAGGTTCT-TACTCGAGGGGGGCCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542739" ref_strand="+" ref_description="SGN-E542739 [TUS-64-D4](-)">
      <seq>cacacataattcatcgcgatatgaagtccagtaatgtacttttagacgaaaactttgaggcgcgagtttctgattttggaatggcaaggctggtaaatgctctggatactcatttaagtgtgagtacacttgctggtactccaggttatgttcctccagagtactaccaaagtttcaggtgcaccgcaaaaggggacgtgtacagttatggtgtcatactgttggagcttctttcagggaaaaggccaatagatccccgtgtattcggtgatgataacaatcttgttggatgggcaaagcaacttcataacgataaacaaagtcacgagattcttgatcctgagctaataacaaatctatctggtgatgctgaactctatcattacttgaaagttgcatttgaatgccttgatgagaaatcttacaaaaggccaacaatgatacaagtgatgaccaagtttaaagaagtacaaactgattcagaaagcgatattcttgatggcatttcagtgaaaggttctatactcgagggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="27220" stop="28350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27520" g_stop="28058" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E542739" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27520" e_stop="28058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACATAATTCATCGCGATATGAAGTCCAGTAATGTACTTTTAGACGAAAACTTTGAGGCGCGAGTTTCTGATTTTGGAATGGCAAGGCTGGTAAATGCTCTGGATACTCATTTAAGTGTGAGTACACTTGCTGGTACTCCAGGTTATGTTCCTCCAGAGTACTACCAAAGTTTCAGGTGCACCGCAAAAGGGGACGTGTACAGTTATGGTGTCATACTGTTGGAGCTTCTTTCAGGGAAAAGGCCAATAGATCCCCGTGTATTCGGTGATGATAACAATCTTGTTGGATGGGCAAAGCAACTTCATAACGATAAACAAAGTCACGAGATTCTTGATCCTGAGCTAATAACAAATCTATCTGGTGATGCTGAACTCTATCATTACTTGAAAGTTGCATTTGAATGCCTTGATGAGAAATCTTACAAAAGGCCAACAATGATACAAGTGATGACCAAGTTTAAAGAAGTACAAACTGATTCAGAAAGCGATATTCTTGATGGCATTTCAGTGAAAGGTTCTATACTCGAGGAATCGCAA</genome_strand>
        <mrna_strand>CACACATAATTCATCGCGATATGAAGTCCAGTAATGTACTTTTAGACGAAAACTTTGAGGCGCGAGTTTCTGATTTTGGAATGGCAAGGCTGGTAAATGCTCTGGATACTCATTTAAGTGTGAGTACACTTGCTGGTACTCCAGGTTATGTTCCTCCAGAGTACTACCAAAGTTTCAGGTGCACCGCAAAAGGGGACGTGTACAGTTATGGTGTCATACTGTTGGAGCTTCTTTCAGGGAAAAGGCCAATAGATCCCCGTGTATTCGGTGATGATAACAATCTTGTTGGATGGGCAAAGCAACTTCATAACGATAAACAAAGTCACGAGATTCTTGATCCTGAGCTAATAACAAATCTATCTGGTGATGCTGAACTCTATCATTACTTGAAAGTTGCATTTGAATGCCTTGATGAGAAATCTTACAAAAGGCCAACAATGATACAAGTGATGACCAAGTTTAAAGAAGTACAAACTGATTCAGAAAGCGATATTCTTGATGGCATTTCAGTGAAAGGTTCTATACTCGAGGGGGGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355485" ref_strand="+" ref_description="SGN-E355485 [cTOS-25-K9]">
      <seq>caaagtttcaggtgcaccgcaaaaggggacgtgtacagttatggtgtcatactgttggagcttctttcagggaaaaggccaatagatccccgtgtattcggtgatgataacaatcttgttggatgggcaaagcaacttcataacgataaacaaagtcacgagattcttgatcctgagctaataacaaatctatctggtgatgctgaactctatcattacttgaaagttgcatttgaatgccttgatgagaaatcttacaaaaggccaacaatgatacaagtgatgaccaagtttaaagaagtacaaactgattcagaaagcgatattcttgatggcatttcagtgaaaggttctatactcgaggaatcgcaagaaagggaaccgtaaatcaatgatatttgatctttttgtggttagaattctcttctttttttctctttttcgcctcatggatagtagtaaaaacttttatctttaatggttcttcactattgagatcgataagagtttatacttcagattttgcctactgtgtaaatatttagaacacgacgatgaatgggagatgtaaagatgtttttatatgaatgttccaatgaatttccctttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="27387" stop="28596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27687" g_stop="28295" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E355485" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27687" e_stop="28295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTTCAGGTGCACCGCAAAAGGGGACGTGTACAGTTATGGTGTCATACTGTTGGAGCTTCTTTCAGGGAAAAGGCCAATAGATCCCCGTGTATTCGGTGATGATAACAATCTTGTTGGATGGGCAAAGCAACTTCATAACGATAAACAAAGTCACGAGATTCTTGATCCTGAGCTAATAACAAATCTATCTGGTGATGCTGAACTCTATCATTACTTGAAAGTTGCATTTGAATGCCTTGATGAGAAATCTTACAAAAGGCCAACAATGATACAAGTGATGACCAAGTTTAAAGAAGTACAAACTGATTCAGAAAGCGATATTCTTGATGGCATTTCAGTGAAAGGTTCTATACTCGAGGAATCGCAAGAAAGGGAACCGTAAATCAATGATATTTGATCTTTTTGTGGTTAGAATTCTCTTCTTTTTTTCTCTTTTTCGCCTCATGGATAGTAGTAAAAACTTTTATCTTTAATGGTTCTTCACTATTGAGATCGATAAGAGTTTATACTTCAGATTTTGCCTACTGTGTAAATATTTAGAACACGACGATGAATGGGAGATGTAAAGATGTTTTTATATGAATGTTCCAATGAATTTCCCTTA</genome_strand>
        <mrna_strand>CAAAGTTTCAGGTGCACCGCAAAAGGGGACGTGTACAGTTATGGTGTCATACTGTTGGAGCTTCTTTCAGGGAAAAGGCCAATAGATCCCCGTGTATTCGGTGATGATAACAATCTTGTTGGATGGGCAAAGCAACTTCATAACGATAAACAAAGTCACGAGATTCTTGATCCTGAGCTAATAACAAATCTATCTGGTGATGCTGAACTCTATCATTACTTGAAAGTTGCATTTGAATGCCTTGATGAGAAATCTTACAAAAGGCCAACAATGATACAAGTGATGACCAAGTTTAAAGAAGTACAAACTGATTCAGAAAGCGATATTCTTGATGGCATTTCAGTGAAAGGTTCTATACTCGAGGAATCGCAAGAAAGGGAACCGTAAATCAATGATATTTGATCTTTTTGTGGTTAGAATTCTCTTCTTTTTTTCTCTTTTTCGCCTCATGGATAGTAGTAAAAACTTTTATCTTTAATGGTTCTTCACTATTGAGATCGATAAGAGTTTATACTTCAGATTTTGCCTACTGTGTAAATATTTAGAACACGACGATGAATGGGAGATGTAAAGATGTTTTTATATGAATGTTCCAATGAATTTCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744726" ref_strand="+" ref_description="SGN-E744726 [GI|13620219]">
      <seq>ataatcttgtacccaatctagccctttttccacagagagagaaaaagagagagaaagagggagaaaggattgcttttgctttttcccatttgtttcttggaagaaagtctgtgggtggagttgggaaaagaaaataaattctaagttaatttggcgtttgagttgctcatgatactagtatcaacaattgatgggtggatttgatgatcatgttgccattatgggagattggatgcctccaagtccaagtccaagaacgtttttctcttcactgctaggcgatgatggtgggtcaagattatcgtttgatggcaccaatgaaactagtggaaacttagcttctggtcctcaagaacatgttggcaattcagatggagttgatacagcaccagctgcaatcagtgagccacaaccggtgaagttgagtgtgccgtctgaccagaaaatgaactctcgcggaggaggactcttggaaagaatagcagctagagcaggatttaatgccccaaagctgaacacggagagccttagacctgctgatctgaggcagaatcaaggagttcgctctccttatttaactattcctcctggccttagtccaacaaccctgctagagtctcctgtttttctctccaattcactggtgcaaccatccccaacaactggaaaatttctattttcctcaggcattgacaatagaaactcggcattgatgatggaggatacagataaaaggaaagataatgctttagagagtatcaattcatcatccttttctttcaagccagttccagagactgctccatctctttttcctggcacgaccagcagatcttggttgcaggtgaacccgtccaatttttctcagcaaggatttccaaacattgaagtttcggttcattcccagaattcgcttgtatctcaccgtgtggaagctacacaaaacccgactcagaatggaacgcttcagcaatcatctgatttccctagattttctgctgagaaggatgtcatggctaataatgttaccctagattctaggacttttcagacagttggtagtgctgtggaccattctccacctctcgatgaaccgcaagatgaggacattgatcaaagaggaggtggagatccaaatgttgctggtgccccagctgaagatggttataattggcgaaaatatgggcagaaacaagttaaggggagcgagtacccccgaagttattacaagtgcacacatccaacctgtccagtcaagaagaaagtggagcgatctccagagggtcatattactgagattatatacaagggagcccacaatcacccaaaacccccacctaaccgtagatcagcccttggatccacaaattcacttggtgacctacaggtggacggtgcagaacaaggtgcaagtggtgttaatggtgatctcggtcaggcaaacttccacaaagcacctggtggtggaggaggttttgattggaggaacaacaatcttgatgcaaacttgggctccgagcactgcaacagatctgcccctttctctgctcagaataacactcgtttggaatcaggtgatgcagtagatgtgtcgtcgaatttttcaaatgatgaagatgaagatgatcgtggaactcatggcagcgtatcacaaggttatgagggtgaaggggatgagtccgagtctaaaagaaggaagcttgagacctactctgcagatatgactggtgctactagagccatcagggagccaagagttgtggttcaaactacaagcgaagtggacatccttgatgatggatatcgctggcgcaagtatgggcaaaaggttgtcaaagggaatccaaatccaaggagttactacaagtgcacaagtgctggctgcaatgtcaggaagcatgttgagagggcctcgcatgacctgaagtcagcgattaccacctacgaagggaagcacaaccacgacgttcctgcagctcgcaacagtagtcatgttaattcaggtgcctccaacactcatccagcttcagttactgcccctgctcaaaaccatttacataggccggaggctgctcaacttcagaatgctatggcgcgatttgacaggcaaccttcattgggctcatttggtctgtcagggaggcccccccagcttggacctaacccaggatttagctatggaatgaaccagcaaggcggcctatccagtctagcaatggccggatttcatcctaatcaaaacaagccaggggaggttcctatgcatccatatctaggacagccgcgacccatgcatgatatgggatttatgttcccaaaggaagaaccaaaggtggaacctctgtcagatcctggcccaacagcttatcagcaatttttgaacagtttgttgcttggacctcagatgtaaatttacagtttttgtcttctctaaagaacagaaagttagagatgctgattttggtacttaatgggcatacctccctacacaaagtcctataatacaactttttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="36164" stop="42033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36464" g_stop="36608" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36609" i_stop="37559" i_length="951">
            <donor d_prob="0.466" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37560" g_stop="38057" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="643" r_length="498" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38058" i_stop="39584" i_length="1527">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39585" g_stop="39773" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="832" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39774" i_stop="39849" i_length="76">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39850" g_stop="40712" g_length="863"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="1695" r_length="863" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40713" i_stop="40814" i_length="102">
            <donor d_prob="0.754" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40815" g_stop="40973" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1696" r_stop="1854" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40974" i_stop="41068" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41069" g_stop="41733" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1855" r_stop="2519" r_length="665" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E744726" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36464" e_stop="36608"/>
          <exon e_start="37560" e_stop="38057"/>
          <exon e_start="39585" e_stop="39773"/>
          <exon e_start="39850" e_stop="40712"/>
          <exon e_start="40815" e_stop="40973"/>
          <exon e_start="41069" e_stop="41733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTTGTACCCAATCTAGCCCTTTTTCCACAGAGAGAGAAAAAGAGAGAGAAAGAGGGAGAAAGGATTGCTTTTGCTTTTTCCCATTTGTTTCTTGGAAGAAAGTCTGTGGGTGGAGTTGGGAAAAGAAAATAAATTCTAAGGTGAGACTAATCTGTGTTGAAGGTCAGGCCAAAGGGTCTATTTTCTTCCATTTTATCATTCTTTTTTTTTGACTCTCTCTTCTTTTTTTTTGATATATATATATATGTTTGTTCAGGTAATTTTTTTTATTGTTATTCTTTGATCATCATTTCTAATGATTGATTTATGCTCCTGTGATTTTAATCTGTGTGTTTTTATTTGTTTTGGGTATTTTTGATGACCCCCATTTGCCTGAAAAAGATTTCTTGTTTCTTTTTGGTTGTTTCCTTTTTTGTTAGATCCTGATGTGCTTCAAGATTTATTAAAGTTTGAATCTTTACCTTCTATAATCAGTTACAGGTTGGAGAAGTGAAGGAATGACATGTTTTTACACCTGCCCTAGATCAAAATTATGCTTTTGTGGAATGTAATTAATTTGTGTCTATTTTGTTTTCCTTTGATGGGCTTTTTTGATAACAAAAGTAAAAATGATGGAGGGGTATATGTGAGTACTGTTATGCTGTTGTATCCTGATTCCTTGATTTGATGACAATCTGAGGGGAATCTTAGTAGCTCGGTTAGTTGGTTGGCTACTTGAGCTTTGATCTTGTTGGTGAGTGTTGGATGCCTCACCTTGTAATCCCTTCCCCTATCCCAATTTGAAAATAAAAAATGGTAATCCAAGAGTAGTTCGTGTGTCTGGTGGATATAGAAGGAGAATTGATTAATGGAGAGGTTGGTTTGAGATCTTTGCTCTATTATATCTGGGAGAATCTACTGTAAGAATAAGTTACCTTAGATGATTATGAGTGGACAGCTAAGTGTCTTATGTCGGAAGTAGTTTTAACGTCTCGAGTATCATTCCTCCTTTGTCATTATTAAAAAGCACTCATAAAAGAGTTGTTTTAAATACTGTAGTGGTTTAGAATCTTTGTGGCTTTATATTCATTTCGTGCTACTCCTCATTGCAGTTAATTTGGCGTTTGAGTTGCTCATGATACTAGTATCAACAATTGATGGGTGGATTTGATGATCATGTTGCCATTATGGGAGATTGGATGCCTCCAAGTCCAAGTCCAAGAACGTTTTTCTCTTCACTGCTAGGCGATGATGGTGGGTCAAGATTATCGTTTGATGGCACCAATGAAACTAGTGGAAACTTAGCTTCTGGTCCTCAAGAACATGTTGGCAATTCAGATGGAGTTGATACAGCACCAGCTGCAATCAGTGAGCCACAACCGGTGAAGTTGAGTGTGCCGTCTGACCAGAAAATGAACTCTCGCGGAGGAGGACTCTTGGAAAGAATAGCAGCTAGAGCAGGATTTAATGCCCCAAAGCTGAACACGGAGAGCCTTAGACCTGCTGATCTGAGGCAGAATCAAGGAGTTCGCTCTCCTTATTTAACTATTCCTCCTGGTCTTAGTCCAACAACCCTGCTAGAGTCTCCTGTTTTTCTCTCCAATTCACTGGTATGAATACAATTCCTGTATACCCTTTGCCTCCCATCACATAATTGATTTCCCAGATTTAGGTTGCTTATTATTCGTTATTTCTGAACTATGCTATAATGGTGGAAGTTTAAGAAGCACACCAACAACAAATGAAAGGGATATAAAACTGAAGTTTAAATAGTAATAGGCTATCGATTCTGCAAAGTGACAAGAGGAGCTGCGACTATGATTAGAGTTTCTCTTGGGTGATATACTGGATGAATCAATTGAAGACTAATATTTGTATCTATTTTAATAGTTCTACCTAACCAACTTCTTTGATTTTTTTAGGTAGAGTCCATGATTGTTCTATGCTGCGATTTGTGAAAATATACTATCCCTCTTTTTCAATTTGCTTGGCTAGTTTTAGAAAGTAAAAATGACTTTTGAATCTAAGATATTTATAATGTACCGAGATCCGCTTCATCTTAACATGTCATGTGGGAAGTTAGAATTAAAGAGTTGCCGAAAAAAGGGAAGAAATATTCTTTCTGATACGGACTAAAAAGCAAAGAAATTGAAATGGGAGTTATATATAATGCTGTAGAAGGATATAGGTATACTTGCTTAGATTGCTATTTGTTGCAACTAGTTATTCATGTTCTTTAGAAAACACTAGCTCATAAATAAAATTCAGATTCTTGTACTTATTCATGAATCTTTTTATGGTGTGTCGCAATCACGAGCATTCTTTTTTTAAAATAGGTAACTTTACAGTCATGACCATTCTCTTTACTGGGTCTGAATTCTTGCATTTTATCAAACTCCATGCAATTCTTTTCTGCATTTACTGAATGAAGGGTTTCATCTTCTGAGTTTATAGCATAAACATCATAAAATAATTTTTTTACCTGCGGTATCTTACTTCAAGTTTGCCTGCTTTGCAAAGTTTACCTGCAACTTGTCATCCGTCCATCTTCCCCTTGCTTTATATTATACTAAAGCAAAACCAATTGTCAGAGTTTAAAGAAGTTGTGAGTCCTAATTCCACATCATGGTCCATGTATTGGTTTTTACTATTGATTTAATCTTCTAATTTGGAGTTTTCAGAACCCAGAAAAGAGCTTCAAGGTCTGTAGTTACTTGTATAGGACAACTGTTAATCTTGCAAGATCTTGTTTCTGATACATATTCTCCATCCGTTTCAATTTCCTTTTTAGGCCATTTAAAGAAGAATGTCCCTTCCCATTTTTGGTAACTCTTTAATTATAACTTTCCACGTGGCATGCTTAAGTCCTTAGGATTAAAGAACATTTTGGTTCATTTTACATGTCTTTAATTTAAGACCACAGAACTCAAAAGTATTCTTTACTTAAATTTTGTGTCAAGTTCAAACCAAACAGGAAAATTGAAACGGAGTATCATTTAGAGGCACAATTTGCTTGGATCATTTTGGCTCCTCTTTTGGGCACTTGTACATTTTTGTGAACTCCCATTGTTCTAAAACTGAAATATTCTTCTTCAAGGTTCTCTTTTCATGTACAATTTTCTATTATTGTCTTGCAGGTGCAACCATCCCCAACAACTGGAAAATTTCTATTTTCCTCAGGCATTGACAATAGAAACTCGGCATTGATGATGGAGGATACAGATAAAAGGAAAGATAATGCTTTAGAGAGTATCAATTCATCATCCTTTTCTTTCAAGCCAGTTCCAGAGACTGCTCCATCTCTTTTTCCTGGCACGACCAGCAGAGTAATCACTCTCAATCTCTCAAATGCACTCTGCACAGATATTCTGTTTGTTTCCAATCTCTGAGCTTGTTTGTTAGTCTTGGTTGCAGGTGAACCCGTCCAATTTTTCTCAGCAAGGATTTCCAAACATTGAAGTTTCGGTTCATTCCCAGAATTCGCTTGTATCTCACCGTGTGGAAGCTACACAAAACCCGACTCAGAATGGAACGCTTCAGCAATCATCTGATTTCCCTAGATTTTCTGCTGAGAAGGATGTCATGGCTAATAATGTTACCCTAGATTCTAGGACTTTTCAGACAGTTGGTAGTGCTGTGGACCATTCTCCACCTCTCGATGAACCGCAAGATGAGGACATTGATCAAAGAGGAGGTGGAGATCCAAATGTTGCTGGTGCCCCAGCTGAAGATGGTTATAATTGGCGAAAATATGGGCAGAAACAAGTTAAGGGGAGCGAGTACCCCCGAAGTTATTACAAGTGCACACATCCAACCTGTCCAGTCAAGAAGAAAGTGGAGCGATCTCCAGAGGGTCATATTACTGAGATTATATACAAGGGAGCCCACAATCACCCAAAACCCCCACCTAACCGTAGATCAGCCCTTGGATCCACAAATTCACTTGGTGACCTACAGGTGGACGGTGCAGAACAAGGTGCAAGTGGTGTTAATGGTGATCTCGGTCAGGCAAACTTCCACAAAGCACCTGGTGGTGGAGGAGGTTTTGATTGGAGGAACAACAATCGTGATGCAAACTTGGGCTCCGAGCACTGCAACAGATCTGCCCCTTTCTCTGCTCAGAATAACACTCGTTTGGAATCAGGTGATGCAGTAGATGTGTCGTCGAATTTTTCAAATGATGAAGATGAAGATGATCGTGGAACTCATGGCAGCGTATCACAAGGTTATGAGGGTGAAGGAGATGAGTCCGAGTCTAAAAGAAGGTTTCTATATCATCGCTAGCCTTAATGAATGAGAATTCCATAATTCTATCAAATTTACCTGAGTACTTAACTTTTTATTATCTCTTTGGTAAATATTACTAGGAAGCTTGAGACCTACTCTGCAGATATGACTGGTGCTACTAGAGCCATCAGGGAGCCAAGAGTTGTGGTTCAAACTACAAGCGAAGTGGACATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAAAAGGTTGTCAAAGGGAATCCAAATCCAAGGTTAGTCACATCAATAAAAAAATTTATGACACCAGAATTCCGAATTTTGACTTGTAAAGTTGTTTGCTAAAAATGATGGATTTTCCTTTTGGCAGGAGTTACTACAAGTGCACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTCGCATGACCTGAAGTCAGTGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTACTGCCCCTGCTCAAAACCATTTACATAGGCCGGAGGCTGCTCAACTTCAGAATGCTATGGCGCGATTTGACAGGCAACCTTCATTGGGCTCATTTGGTCTGTCAGGGAGGCCCCCCCAGCTTGGACCTAACCCAGGATTTAGCTATGGAATGAACCAGCAAGGCGGCCTATCCAGTCTAGCAATGGCCGGATTTCATCCTAATCAAAACAAGCCAGGGGAGGTTCCTATGCATCCATATCTAGGACAGCCGCGACCCATGCATGATATGGGATTTATGTTCCCAAAGGAAGAACCAAAGGTGGAACCTCTGTCAGATCCTGGCCCAACAGCTTATCAGCAATTTTTGAACAGTTTGTCGCTTGGACCTCAGATGTAAATTTACAGTTTTTGTCTTCTCTAAAGAACAGAAAGTTAGAGATGCTGATTTTGGTACTTAATGGGCATACCTCCCTACACAGAGTCCTATAATACAACTTTTTGAAGCT</genome_strand>
        <mrna_strand>ATAATCTTGTACCCAATCTAGCCCTTTTTCCACAGAGAGAGAAAAAGAGAGAGAAAGAGGGAGAAAGGATTGCTTTTGCTTTTTCCCATTTGTTTCTTGGAAGAAAGTCTGTGGGTGGAGTTGGGAAAAGAAAATAAATTCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTTGGCGTTTGAGTTGCTCATGATACTAGTATCAACAATTGATGGGTGGATTTGATGATCATGTTGCCATTATGGGAGATTGGATGCCTCCAAGTCCAAGTCCAAGAACGTTTTTCTCTTCACTGCTAGGCGATGATGGTGGGTCAAGATTATCGTTTGATGGCACCAATGAAACTAGTGGAAACTTAGCTTCTGGTCCTCAAGAACATGTTGGCAATTCAGATGGAGTTGATACAGCACCAGCTGCAATCAGTGAGCCACAACCGGTGAAGTTGAGTGTGCCGTCTGACCAGAAAATGAACTCTCGCGGAGGAGGACTCTTGGAAAGAATAGCAGCTAGAGCAGGATTTAATGCCCCAAAGCTGAACACGGAGAGCCTTAGACCTGCTGATCTGAGGCAGAATCAAGGAGTTCGCTCTCCTTATTTAACTATTCCTCCTGGCCTTAGTCCAACAACCCTGCTAGAGTCTCCTGTTTTTCTCTCCAATTCACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAACCATCCCCAACAACTGGAAAATTTCTATTTTCCTCAGGCATTGACAATAGAAACTCGGCATTGATGATGGAGGATACAGATAAAAGGAAAGATAATGCTTTAGAGAGTATCAATTCATCATCCTTTTCTTTCAAGCCAGTTCCAGAGACTGCTCCATCTCTTTTTCCTGGCACGACCAGCAGA............................................................................TCTTGGTTGCAGGTGAACCCGTCCAATTTTTCTCAGCAAGGATTTCCAAACATTGAAGTTTCGGTTCATTCCCAGAATTCGCTTGTATCTCACCGTGTGGAAGCTACACAAAACCCGACTCAGAATGGAACGCTTCAGCAATCATCTGATTTCCCTAGATTTTCTGCTGAGAAGGATGTCATGGCTAATAATGTTACCCTAGATTCTAGGACTTTTCAGACAGTTGGTAGTGCTGTGGACCATTCTCCACCTCTCGATGAACCGCAAGATGAGGACATTGATCAAAGAGGAGGTGGAGATCCAAATGTTGCTGGTGCCCCAGCTGAAGATGGTTATAATTGGCGAAAATATGGGCAGAAACAAGTTAAGGGGAGCGAGTACCCCCGAAGTTATTACAAGTGCACACATCCAACCTGTCCAGTCAAGAAGAAAGTGGAGCGATCTCCAGAGGGTCATATTACTGAGATTATATACAAGGGAGCCCACAATCACCCAAAACCCCCACCTAACCGTAGATCAGCCCTTGGATCCACAAATTCACTTGGTGACCTACAGGTGGACGGTGCAGAACAAGGTGCAAGTGGTGTTAATGGTGATCTCGGTCAGGCAAACTTCCACAAAGCACCTGGTGGTGGAGGAGGTTTTGATTGGAGGAACAACAATCTTGATGCAAACTTGGGCTCCGAGCACTGCAACAGATCTGCCCCTTTCTCTGCTCAGAATAACACTCGTTTGGAATCAGGTGATGCAGTAGATGTGTCGTCGAATTTTTCAAATGATGAAGATGAAGATGATCGTGGAACTCATGGCAGCGTATCACAAGGTTATGAGGGTGAAGGGGATGAGTCCGAGTCTAAAAGAAG......................................................................................................GAAGCTTGAGACCTACTCTGCAGATATGACTGGTGCTACTAGAGCCATCAGGGAGCCAAGAGTTGTGGTTCAAACTACAAGCGAAGTGGACATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAAAAGGTTGTCAAAGGGAATCCAAATCCAAG...............................................................................................GAGTTACTACAAGTGCACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTCGCATGACCTGAAGTCAGCGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTACTGCCCCTGCTCAAAACCATTTACATAGGCCGGAGGCTGCTCAACTTCAGAATGCTATGGCGCGATTTGACAGGCAACCTTCATTGGGCTCATTTGGTCTGTCAGGGAGGCCCCCCCAGCTTGGACCTAACCCAGGATTTAGCTATGGAATGAACCAGCAAGGCGGCCTATCCAGTCTAGCAATGGCCGGATTTCATCCTAATCAAAACAAGCCAGGGGAGGTTCCTATGCATCCATATCTAGGACAGCCGCGACCCATGCATGATATGGGATTTATGTTCCCAAAGGAAGAACCAAAGGTGGAACCTCTGTCAGATCCTGGCCCAACAGCTTATCAGCAATTTTTGAACAGTTTGTTGCTTGGACCTCAGATGTAAATTTACAGTTTTTGTCTTCTCTAAAGAACAGAAAGTTAGAGATGCTGATTTTGGTACTTAATGGGCATACCTCCCTACACAAAGTCCTATAATACAACTTTTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271766" ref_strand="+" ref_description="SGN-E271766 [cLEM-8-E23]">
      <seq>caatctagccctttttccacagagagagaaaaagagagagaaagagggagaaaggattgcttttgctttttcccatttgtttcttggaagaaagtctgtgggtggagttgggaaaagaaaataaattctaagttaatttggcgtttgagttgctcatgatactagtatcaacaattgatgggtggatttgatgatcatgttgccattatgggagattggatgcctccaagtccaagtccaagaacgtttttctcttcactgctaggcgatgatggtgggtcaagattatcgtttgatggcaccaatgaaactagtggaaacttagcttctggtcctcaagaacatgttggcaattcagatggagttgatacagcaccagctgcaatcagtgagccacaaccggtgaagttgagtgtgccgtctgaccagaaaatgaactctcgcggaggaggactcttggaaagaatagcagctagagcaggatttaatgccccaaagctgaacacggagagccttagacctgctgatctgaggcagaatcaaggagttcgctctccttatttaactattcctcctggtcttagtccaacaaccctgctagagtctcctgtttttctctccaattcactggtgcaaccatccccaacaactggaaaatttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="36177" stop="39917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36477" g_stop="36608" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36609" i_stop="37559" i_length="951">
            <donor d_prob="0.466" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37560" g_stop="38057" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="630" r_length="498" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38058" i_stop="39584" i_length="1527">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39585" g_stop="39617" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="663" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E271766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36477" e_stop="36608"/>
          <exon e_start="37560" e_stop="38057"/>
          <exon e_start="39585" e_stop="39617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTAGCCCTTTTTCCACAGAGAGAGAAAAAGAGAGAGAAAGAGGGAGAAAGGATTGCTTTTGCTTTTTCCCATTTGTTTCTTGGAAGAAAGTCTGTGGGTGGAGTTGGGAAAAGAAAATAAATTCTAAGGTGAGACTAATCTGTGTTGAAGGTCAGGCCAAAGGGTCTATTTTCTTCCATTTTATCATTCTTTTTTTTTGACTCTCTCTTCTTTTTTTTTGATATATATATATATGTTTGTTCAGGTAATTTTTTTTATTGTTATTCTTTGATCATCATTTCTAATGATTGATTTATGCTCCTGTGATTTTAATCTGTGTGTTTTTATTTGTTTTGGGTATTTTTGATGACCCCCATTTGCCTGAAAAAGATTTCTTGTTTCTTTTTGGTTGTTTCCTTTTTTGTTAGATCCTGATGTGCTTCAAGATTTATTAAAGTTTGAATCTTTACCTTCTATAATCAGTTACAGGTTGGAGAAGTGAAGGAATGACATGTTTTTACACCTGCCCTAGATCAAAATTATGCTTTTGTGGAATGTAATTAATTTGTGTCTATTTTGTTTTCCTTTGATGGGCTTTTTTGATAACAAAAGTAAAAATGATGGAGGGGTATATGTGAGTACTGTTATGCTGTTGTATCCTGATTCCTTGATTTGATGACAATCTGAGGGGAATCTTAGTAGCTCGGTTAGTTGGTTGGCTACTTGAGCTTTGATCTTGTTGGTGAGTGTTGGATGCCTCACCTTGTAATCCCTTCCCCTATCCCAATTTGAAAATAAAAAATGGTAATCCAAGAGTAGTTCGTGTGTCTGGTGGATATAGAAGGAGAATTGATTAATGGAGAGGTTGGTTTGAGATCTTTGCTCTATTATATCTGGGAGAATCTACTGTAAGAATAAGTTACCTTAGATGATTATGAGTGGACAGCTAAGTGTCTTATGTCGGAAGTAGTTTTAACGTCTCGAGTATCATTCCTCCTTTGTCATTATTAAAAAGCACTCATAAAAGAGTTGTTTTAAATACTGTAGTGGTTTAGAATCTTTGTGGCTTTATATTCATTTCGTGCTACTCCTCATTGCAGTTAATTTGGCGTTTGAGTTGCTCATGATACTAGTATCAACAATTGATGGGTGGATTTGATGATCATGTTGCCATTATGGGAGATTGGATGCCTCCAAGTCCAAGTCCAAGAACGTTTTTCTCTTCACTGCTAGGCGATGATGGTGGGTCAAGATTATCGTTTGATGGCACCAATGAAACTAGTGGAAACTTAGCTTCTGGTCCTCAAGAACATGTTGGCAATTCAGATGGAGTTGATACAGCACCAGCTGCAATCAGTGAGCCACAACCGGTGAAGTTGAGTGTGCCGTCTGACCAGAAAATGAACTCTCGCGGAGGAGGACTCTTGGAAAGAATAGCAGCTAGAGCAGGATTTAATGCCCCAAAGCTGAACACGGAGAGCCTTAGACCTGCTGATCTGAGGCAGAATCAAGGAGTTCGCTCTCCTTATTTAACTATTCCTCCTGGTCTTAGTCCAACAACCCTGCTAGAGTCTCCTGTTTTTCTCTCCAATTCACTGGTATGAATACAATTCCTGTATACCCTTTGCCTCCCATCACATAATTGATTTCCCAGATTTAGGTTGCTTATTATTCGTTATTTCTGAACTATGCTATAATGGTGGAAGTTTAAGAAGCACACCAACAACAAATGAAAGGGATATAAAACTGAAGTTTAAATAGTAATAGGCTATCGATTCTGCAAAGTGACAAGAGGAGCTGCGACTATGATTAGAGTTTCTCTTGGGTGATATACTGGATGAATCAATTGAAGACTAATATTTGTATCTATTTTAATAGTTCTACCTAACCAACTTCTTTGATTTTTTTAGGTAGAGTCCATGATTGTTCTATGCTGCGATTTGTGAAAATATACTATCCCTCTTTTTCAATTTGCTTGGCTAGTTTTAGAAAGTAAAAATGACTTTTGAATCTAAGATATTTATAATGTACCGAGATCCGCTTCATCTTAACATGTCATGTGGGAAGTTAGAATTAAAGAGTTGCCGAAAAAAGGGAAGAAATATTCTTTCTGATACGGACTAAAAAGCAAAGAAATTGAAATGGGAGTTATATATAATGCTGTAGAAGGATATAGGTATACTTGCTTAGATTGCTATTTGTTGCAACTAGTTATTCATGTTCTTTAGAAAACACTAGCTCATAAATAAAATTCAGATTCTTGTACTTATTCATGAATCTTTTTATGGTGTGTCGCAATCACGAGCATTCTTTTTTTAAAATAGGTAACTTTACAGTCATGACCATTCTCTTTACTGGGTCTGAATTCTTGCATTTTATCAAACTCCATGCAATTCTTTTCTGCATTTACTGAATGAAGGGTTTCATCTTCTGAGTTTATAGCATAAACATCATAAAATAATTTTTTTACCTGCGGTATCTTACTTCAAGTTTGCCTGCTTTGCAAAGTTTACCTGCAACTTGTCATCCGTCCATCTTCCCCTTGCTTTATATTATACTAAAGCAAAACCAATTGTCAGAGTTTAAAGAAGTTGTGAGTCCTAATTCCACATCATGGTCCATGTATTGGTTTTTACTATTGATTTAATCTTCTAATTTGGAGTTTTCAGAACCCAGAAAAGAGCTTCAAGGTCTGTAGTTACTTGTATAGGACAACTGTTAATCTTGCAAGATCTTGTTTCTGATACATATTCTCCATCCGTTTCAATTTCCTTTTTAGGCCATTTAAAGAAGAATGTCCCTTCCCATTTTTGGTAACTCTTTAATTATAACTTTCCACGTGGCATGCTTAAGTCCTTAGGATTAAAGAACATTTTGGTTCATTTTACATGTCTTTAATTTAAGACCACAGAACTCAAAAGTATTCTTTACTTAAATTTTGTGTCAAGTTCAAACCAAACAGGAAAATTGAAACGGAGTATCATTTAGAGGCACAATTTGCTTGGATCATTTTGGCTCCTCTTTTGGGCACTTGTACATTTTTGTGAACTCCCATTGTTCTAAAACTGAAATATTCTTCTTCAAGGTTCTCTTTTCATGTACAATTTTCTATTATTGTCTTGCAGGTGCAACCATCCCCAACAACTGGAAAATTTCTA</genome_strand>
        <mrna_strand>CAATCTAGCCCTTTTTCCACAGAGAGAGAAAAAGAGAGAGAAAGAGGGAGAAAGGATTGCTTTTGCTTTTTCCCATTTGTTTCTTGGAAGAAAGTCTGTGGGTGGAGTTGGGAAAAGAAAATAAATTCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTTGGCGTTTGAGTTGCTCATGATACTAGTATCAACAATTGATGGGTGGATTTGATGATCATGTTGCCATTATGGGAGATTGGATGCCTCCAAGTCCAAGTCCAAGAACGTTTTTCTCTTCACTGCTAGGCGATGATGGTGGGTCAAGATTATCGTTTGATGGCACCAATGAAACTAGTGGAAACTTAGCTTCTGGTCCTCAAGAACATGTTGGCAATTCAGATGGAGTTGATACAGCACCAGCTGCAATCAGTGAGCCACAACCGGTGAAGTTGAGTGTGCCGTCTGACCAGAAAATGAACTCTCGCGGAGGAGGACTCTTGGAAAGAATAGCAGCTAGAGCAGGATTTAATGCCCCAAAGCTGAACACGGAGAGCCTTAGACCTGCTGATCTGAGGCAGAATCAAGGAGTTCGCTCTCCTTATTTAACTATTCCTCCTGGTCTTAGTCCAACAACCCTGCTAGAGTCTCCTGTTTTTCTCTCCAATTCACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAACCATCCCCAACAACTGGAAAATTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333384" ref_strand="+" ref_description="SGN-E333384 [cTOD-20-K24]">
      <seq>tctagccctttttccacagagagagaaaaagagagagaaagagggagaaaggattgcttttgctttttcccatttgtttcttggaagaaagtctgtgggtggagttgggaaaagaaaataaattctaagttaatttggcgtttgagttgctcatgatactagtatcaacaattgatgggtggatttgatgatcatgttgccattatgggagattggatgcctccaagtccaagtccaagaacgtttttctcttcactgctaggcgatgatggtgggtcaagattatcgtttgatggcaccaatgaaactagtggaaacttagcttctggtcctcaagaacatgttggcaattcagatggagttgatacagcaccagctgcaatcagtgagccacaaccggtgaagttgagtgtgccgtctgaccagaaaatgaactctcgcggaggaggactcttggaaagaatagcagctagagcaggattaatggccccaagctgaacacggagagccttagacctgctgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="36180" stop="38257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36480" g_stop="36608" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36609" i_stop="37559" i_length="951">
            <donor d_prob="0.466" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37560" g_stop="37957" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="526" r_length="397" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E333384" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36480" e_stop="36608"/>
          <exon e_start="37560" e_stop="37957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGCCCTTTTTCCACAGAGAGAGAAAAAGAGAGAGAAAGAGGGAGAAAGGATTGCTTTTGCTTTTTCCCATTTGTTTCTTGGAAGAAAGTCTGTGGGTGGAGTTGGGAAAAGAAAATAAATTCTAAGGTGAGACTAATCTGTGTTGAAGGTCAGGCCAAAGGGTCTATTTTCTTCCATTTTATCATTCTTTTTTTTTGACTCTCTCTTCTTTTTTTTTGATATATATATATATGTTTGTTCAGGTAATTTTTTTTATTGTTATTCTTTGATCATCATTTCTAATGATTGATTTATGCTCCTGTGATTTTAATCTGTGTGTTTTTATTTGTTTTGGGTATTTTTGATGACCCCCATTTGCCTGAAAAAGATTTCTTGTTTCTTTTTGGTTGTTTCCTTTTTTGTTAGATCCTGATGTGCTTCAAGATTTATTAAAGTTTGAATCTTTACCTTCTATAATCAGTTACAGGTTGGAGAAGTGAAGGAATGACATGTTTTTACACCTGCCCTAGATCAAAATTATGCTTTTGTGGAATGTAATTAATTTGTGTCTATTTTGTTTTCCTTTGATGGGCTTTTTTGATAACAAAAGTAAAAATGATGGAGGGGTATATGTGAGTACTGTTATGCTGTTGTATCCTGATTCCTTGATTTGATGACAATCTGAGGGGAATCTTAGTAGCTCGGTTAGTTGGTTGGCTACTTGAGCTTTGATCTTGTTGGTGAGTGTTGGATGCCTCACCTTGTAATCCCTTCCCCTATCCCAATTTGAAAATAAAAAATGGTAATCCAAGAGTAGTTCGTGTGTCTGGTGGATATAGAAGGAGAATTGATTAATGGAGAGGTTGGTTTGAGATCTTTGCTCTATTATATCTGGGAGAATCTACTGTAAGAATAAGTTACCTTAGATGATTATGAGTGGACAGCTAAGTGTCTTATGTCGGAAGTAGTTTTAACGTCTCGAGTATCATTCCTCCTTTGTCATTATTAAAAAGCACTCATAAAAGAGTTGTTTTAAATACTGTAGTGGTTTAGAATCTTTGTGGCTTTATATTCATTTCGTGCTACTCCTCATTGCAGTTAATTTGGCGTTTGAGTTGCTCATGATACTAGTATCAACAATTGATGGGTGGATTTGATGATCATGTTGCCATTATGGGAGATTGGATGCCTCCAAGTCCAAGTCCAAGAACGTTTTTCTCTTCACTGCTAGGCGATGATGGTGGGTCAAGATTATCGTTTGATGGCACCAATGAAACTAGTGGAAACTTAGCTTCTGGTCCTCAAGAACATGTTGGCAATTCAGATGGAGTTGATACAGCACCAGCTGCAATCAGTGAGCCACAACCGGTGAAGTTGAGTGTGCCGTCTGACCAGAAAATGAACTCTCGCGGAGGAGGACTCTTGGAAAGAATAGCAGCTAGAGCAGGATTTAATGCCCCAAAGCTGAACACGGAGAGCCTTAGACCTGCTGATCT</genome_strand>
        <mrna_strand>TCTAGCCCTTTTTCCACAGAGAGAGAAAAAGAGAGAGAAAGAGGGAGAAAGGATTGCTTTTGCTTTTTCCCATTTGTTTCTTGGAAGAAAGTCTGTGGGTGGAGTTGGGAAAAGAAAATAAATTCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTTGGCGTTTGAGTTGCTCATGATACTAGTATCAACAATTGATGGGTGGATTTGATGATCATGTTGCCATTATGGGAGATTGGATGCCTCCAAGTCCAAGTCCAAGAACGTTTTTCTCTTCACTGCTAGGCGATGATGGTGGGTCAAGATTATCGTTTGATGGCACCAATGAAACTAGTGGAAACTTAGCTTCTGGTCCTCAAGAACATGTTGGCAATTCAGATGGAGTTGATACAGCACCAGCTGCAATCAGTGAGCCACAACCGGTGAAGTTGAGTGTGCCGTCTGACCAGAAAATGAACTCTCGCGGAGGAGGACTCTTGGAAAGAATAGCAGCTAGAGCAGGA-TTAATGGCCCCAAGCTGAACACGGAGAGCCTTAGACCTGCTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328967" ref_strand="+" ref_description="SGN-E328967 [cTOC-24-N8]">
      <seq>ccctttttccacagagagagaaaaagagagagaaagagggagaaaggattgcttttgctttttcccatttgtttcttggaagaaagtctgtgggtggagttgggaaaagaaaataaattctaagttaatttggcgtttgagttgctcatgatactagtatcaacaattgatgggtggatttgatgatcatgttgccattatgggagattggatgcctccaagtccaagtccaagaacgtttttctcttcactgctaggcgatgatggtgggtcaagattatcgtttgatggcaccaatgaaactagtggaaacttagcttctggtcctcaagaacatgttggcaattcagatggagttgatacagcaccagctgcaatcagtgagccacaaccggtgaagttgagtgtgccgtctgaccagaaaatgaactctcgcggaggaggactcttggaaagaatagcagctagagcaggatttaatgccccaaagctgaacacggagagccttagacctgctgatctgaggcagaatcaaggagttcgctctccttatttaactattcctcctggtcttagtccaacaaccctgctagagtctcctgtttttctctccaattcactggtgcaaccatccccaacaactggaaaatttctattttcctcangcattgacaatagaaactcggcattgatgatggangatacagataaaaggaaagataatgctttagagagtatcaattcatcatccttttcttttcagccagttccagagactgctccatctctttttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="36185" stop="40059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36485" g_stop="36608" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36609" i_stop="37559" i_length="951">
            <donor d_prob="0.466" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37560" g_stop="38057" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="622" r_length="498" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38058" i_stop="39584" i_length="1527">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39585" g_stop="39759" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="797" r_length="175" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E328967" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36485" e_stop="36608"/>
          <exon e_start="37560" e_stop="38057"/>
          <exon e_start="39585" e_stop="39759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTTTCCACAGAGAGAGAAAAAGAGAGAGAAAGAGGGAGAAAGGATTGCTTTTGCTTTTTCCCATTTGTTTCTTGGAAGAAAGTCTGTGGGTGGAGTTGGGAAAAGAAAATAAATTCTAAGGTGAGACTAATCTGTGTTGAAGGTCAGGCCAAAGGGTCTATTTTCTTCCATTTTATCATTCTTTTTTTTTGACTCTCTCTTCTTTTTTTTTGATATATATATATATGTTTGTTCAGGTAATTTTTTTTATTGTTATTCTTTGATCATCATTTCTAATGATTGATTTATGCTCCTGTGATTTTAATCTGTGTGTTTTTATTTGTTTTGGGTATTTTTGATGACCCCCATTTGCCTGAAAAAGATTTCTTGTTTCTTTTTGGTTGTTTCCTTTTTTGTTAGATCCTGATGTGCTTCAAGATTTATTAAAGTTTGAATCTTTACCTTCTATAATCAGTTACAGGTTGGAGAAGTGAAGGAATGACATGTTTTTACACCTGCCCTAGATCAAAATTATGCTTTTGTGGAATGTAATTAATTTGTGTCTATTTTGTTTTCCTTTGATGGGCTTTTTTGATAACAAAAGTAAAAATGATGGAGGGGTATATGTGAGTACTGTTATGCTGTTGTATCCTGATTCCTTGATTTGATGACAATCTGAGGGGAATCTTAGTAGCTCGGTTAGTTGGTTGGCTACTTGAGCTTTGATCTTGTTGGTGAGTGTTGGATGCCTCACCTTGTAATCCCTTCCCCTATCCCAATTTGAAAATAAAAAATGGTAATCCAAGAGTAGTTCGTGTGTCTGGTGGATATAGAAGGAGAATTGATTAATGGAGAGGTTGGTTTGAGATCTTTGCTCTATTATATCTGGGAGAATCTACTGTAAGAATAAGTTACCTTAGATGATTATGAGTGGACAGCTAAGTGTCTTATGTCGGAAGTAGTTTTAACGTCTCGAGTATCATTCCTCCTTTGTCATTATTAAAAAGCACTCATAAAAGAGTTGTTTTAAATACTGTAGTGGTTTAGAATCTTTGTGGCTTTATATTCATTTCGTGCTACTCCTCATTGCAGTTAATTTGGCGTTTGAGTTGCTCATGATACTAGTATCAACAATTGATGGGTGGATTTGATGATCATGTTGCCATTATGGGAGATTGGATGCCTCCAAGTCCAAGTCCAAGAACGTTTTTCTCTTCACTGCTAGGCGATGATGGTGGGTCAAGATTATCGTTTGATGGCACCAATGAAACTAGTGGAAACTTAGCTTCTGGTCCTCAAGAACATGTTGGCAATTCAGATGGAGTTGATACAGCACCAGCTGCAATCAGTGAGCCACAACCGGTGAAGTTGAGTGTGCCGTCTGACCAGAAAATGAACTCTCGCGGAGGAGGACTCTTGGAAAGAATAGCAGCTAGAGCAGGATTTAATGCCCCAAAGCTGAACACGGAGAGCCTTAGACCTGCTGATCTGAGGCAGAATCAAGGAGTTCGCTCTCCTTATTTAACTATTCCTCCTGGTCTTAGTCCAACAACCCTGCTAGAGTCTCCTGTTTTTCTCTCCAATTCACTGGTATGAATACAATTCCTGTATACCCTTTGCCTCCCATCACATAATTGATTTCCCAGATTTAGGTTGCTTATTATTCGTTATTTCTGAACTATGCTATAATGGTGGAAGTTTAAGAAGCACACCAACAACAAATGAAAGGGATATAAAACTGAAGTTTAAATAGTAATAGGCTATCGATTCTGCAAAGTGACAAGAGGAGCTGCGACTATGATTAGAGTTTCTCTTGGGTGATATACTGGATGAATCAATTGAAGACTAATATTTGTATCTATTTTAATAGTTCTACCTAACCAACTTCTTTGATTTTTTTAGGTAGAGTCCATGATTGTTCTATGCTGCGATTTGTGAAAATATACTATCCCTCTTTTTCAATTTGCTTGGCTAGTTTTAGAAAGTAAAAATGACTTTTGAATCTAAGATATTTATAATGTACCGAGATCCGCTTCATCTTAACATGTCATGTGGGAAGTTAGAATTAAAGAGTTGCCGAAAAAAGGGAAGAAATATTCTTTCTGATACGGACTAAAAAGCAAAGAAATTGAAATGGGAGTTATATATAATGCTGTAGAAGGATATAGGTATACTTGCTTAGATTGCTATTTGTTGCAACTAGTTATTCATGTTCTTTAGAAAACACTAGCTCATAAATAAAATTCAGATTCTTGTACTTATTCATGAATCTTTTTATGGTGTGTCGCAATCACGAGCATTCTTTTTTTAAAATAGGTAACTTTACAGTCATGACCATTCTCTTTACTGGGTCTGAATTCTTGCATTTTATCAAACTCCATGCAATTCTTTTCTGCATTTACTGAATGAAGGGTTTCATCTTCTGAGTTTATAGCATAAACATCATAAAATAATTTTTTTACCTGCGGTATCTTACTTCAAGTTTGCCTGCTTTGCAAAGTTTACCTGCAACTTGTCATCCGTCCATCTTCCCCTTGCTTTATATTATACTAAAGCAAAACCAATTGTCAGAGTTTAAAGAAGTTGTGAGTCCTAATTCCACATCATGGTCCATGTATTGGTTTTTACTATTGATTTAATCTTCTAATTTGGAGTTTTCAGAACCCAGAAAAGAGCTTCAAGGTCTGTAGTTACTTGTATAGGACAACTGTTAATCTTGCAAGATCTTGTTTCTGATACATATTCTCCATCCGTTTCAATTTCCTTTTTAGGCCATTTAAAGAAGAATGTCCCTTCCCATTTTTGGTAACTCTTTAATTATAACTTTCCACGTGGCATGCTTAAGTCCTTAGGATTAAAGAACATTTTGGTTCATTTTACATGTCTTTAATTTAAGACCACAGAACTCAAAAGTATTCTTTACTTAAATTTTGTGTCAAGTTCAAACCAAACAGGAAAATTGAAACGGAGTATCATTTAGAGGCACAATTTGCTTGGATCATTTTGGCTCCTCTTTTGGGCACTTGTACATTTTTGTGAACTCCCATTGTTCTAAAACTGAAATATTCTTCTTCAAGGTTCTCTTTTCATGTACAATTTTCTATTATTGTCTTGCAGGTGCAACCATCCCCAACAACTGGAAAATTTCTATTTTCCTCAGGCATTGACAATAGAAACTCGGCATTGATGATGGAGGATACAGATAAAAGGAAAGATAATGCTTTAGAGAGTATCAATTCATCATCCTTTTCTTTCAAGCCAGTTCCAGAGACTGCTCCATCTCTTTTTCCTG</genome_strand>
        <mrna_strand>CCCTTTTTCCACAGAGAGAGAAAAAGAGAGAGAAAGAGGGAGAAAGGATTGCTTTTGCTTTTTCCCATTTGTTTCTTGGAAGAAAGTCTGTGGGTGGAGTTGGGAAAAGAAAATAAATTCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTTGGCGTTTGAGTTGCTCATGATACTAGTATCAACAATTGATGGGTGGATTTGATGATCATGTTGCCATTATGGGAGATTGGATGCCTCCAAGTCCAAGTCCAAGAACGTTTTTCTCTTCACTGCTAGGCGATGATGGTGGGTCAAGATTATCGTTTGATGGCACCAATGAAACTAGTGGAAACTTAGCTTCTGGTCCTCAAGAACATGTTGGCAATTCAGATGGAGTTGATACAGCACCAGCTGCAATCAGTGAGCCACAACCGGTGAAGTTGAGTGTGCCGTCTGACCAGAAAATGAACTCTCGCGGAGGAGGACTCTTGGAAAGAATAGCAGCTAGAGCAGGATTTAATGCCCCAAAGCTGAACACGGAGAGCCTTAGACCTGCTGATCTGAGGCAGAATCAAGGAGTTCGCTCTCCTTATTTAACTATTCCTCCTGGTCTTAGTCCAACAACCCTGCTAGAGTCTCCTGTTTTTCTCTCCAATTCACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAACCATCCCCAACAACTGGAAAATTTCTATTTTCCTCANGCATTGACAATAGAAACTCGGCATTGATGATGGANGATACAGATAAAAGGAAAGATAATGCTTTAGAGAGTATCAATTCATCATCCTTTTCTTTTCAGCCAGTTCCAGAGACTGCTCCATCTCTTTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269492" ref_strand="+" ref_description="SGN-E269492 [cLEM-2-N17]">
      <seq>tttcttccattttatcattctttttttttgactctctcttctttttttttgatatatatatatatgtttgttcagttaatttggcgtttgagttgctcatgatactagtatcaacaattgatgggtggatttgatgatcatgttgccattatgggagattggatgcctccaagtccaagtccaagaacgtttttctcttcactgctaggcgatgatggtgggtcaagattatcgtttgatggcaccaatgaaactagtggaaacttagcttctggtcctcaagaacatgttggcaattcagatggagttgatacagcaccagctgcaatcagtgagccacaaccggtgaagttgagtgtgccgtctgaccagaaaatgaactctcgcggaggaggactcttggaaagaatagcagctagagcaggatttaatgccccaaagctgaacacggagagccttagacctgctgatctgaggcagaatcaaggagttcgctctccttatttaactattcctcctggtcttagtccaacaaccctgctagagtctcctgtttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="36350" stop="38344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36650" g_stop="36724" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36725" i_stop="37559" i_length="835">
            <donor d_prob="0.282" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37560" g_stop="38044" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="560" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E269492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36650" e_stop="36724"/>
          <exon e_start="37560" e_stop="38044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCATTTTATCATTCTTTTTTTTTGACTCTCTCTTCTTTTTTTTTGATATATATATATATGTTTGTTCAGGTAATTTTTTTTATTGTTATTCTTTGATCATCATTTCTAATGATTGATTTATGCTCCTGTGATTTTAATCTGTGTGTTTTTATTTGTTTTGGGTATTTTTGATGACCCCCATTTGCCTGAAAAAGATTTCTTGTTTCTTTTTGGTTGTTTCCTTTTTTGTTAGATCCTGATGTGCTTCAAGATTTATTAAAGTTTGAATCTTTACCTTCTATAATCAGTTACAGGTTGGAGAAGTGAAGGAATGACATGTTTTTACACCTGCCCTAGATCAAAATTATGCTTTTGTGGAATGTAATTAATTTGTGTCTATTTTGTTTTCCTTTGATGGGCTTTTTTGATAACAAAAGTAAAAATGATGGAGGGGTATATGTGAGTACTGTTATGCTGTTGTATCCTGATTCCTTGATTTGATGACAATCTGAGGGGAATCTTAGTAGCTCGGTTAGTTGGTTGGCTACTTGAGCTTTGATCTTGTTGGTGAGTGTTGGATGCCTCACCTTGTAATCCCTTCCCCTATCCCAATTTGAAAATAAAAAATGGTAATCCAAGAGTAGTTCGTGTGTCTGGTGGATATAGAAGGAGAATTGATTAATGGAGAGGTTGGTTTGAGATCTTTGCTCTATTATATCTGGGAGAATCTACTGTAAGAATAAGTTACCTTAGATGATTATGAGTGGACAGCTAAGTGTCTTATGTCGGAAGTAGTTTTAACGTCTCGAGTATCATTCCTCCTTTGTCATTATTAAAAAGCACTCATAAAAGAGTTGTTTTAAATACTGTAGTGGTTTAGAATCTTTGTGGCTTTATATTCATTTCGTGCTACTCCTCATTGCAGTTAATTTGGCGTTTGAGTTGCTCATGATACTAGTATCAACAATTGATGGGTGGATTTGATGATCATGTTGCCATTATGGGAGATTGGATGCCTCCAAGTCCAAGTCCAAGAACGTTTTTCTCTTCACTGCTAGGCGATGATGGTGGGTCAAGATTATCGTTTGATGGCACCAATGAAACTAGTGGAAACTTAGCTTCTGGTCCTCAAGAACATGTTGGCAATTCAGATGGAGTTGATACAGCACCAGCTGCAATCAGTGAGCCACAACCGGTGAAGTTGAGTGTGCCGTCTGACCAGAAAATGAACTCTCGCGGAGGAGGACTCTTGGAAAGAATAGCAGCTAGAGCAGGATTTAATGCCCCAAAGCTGAACACGGAGAGCCTTAGACCTGCTGATCTGAGGCAGAATCAAGGAGTTCGCTCTCCTTATTTAACTATTCCTCCTGGTCTTAGTCCAACAACCCTGCTAGAGTCTCCTGTTTTTCT</genome_strand>
        <mrna_strand>TTTCTTCCATTTTATCATTCTTTTTTTTTGACTCTCTCTTCTTTTTTTTTGATATATATATATATGTTTGTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTTGGCGTTTGAGTTGCTCATGATACTAGTATCAACAATTGATGGGTGGATTTGATGATCATGTTGCCATTATGGGAGATTGGATGCCTCCAAGTCCAAGTCCAAGAACGTTTTTCTCTTCACTGCTAGGCGATGATGGTGGGTCAAGATTATCGTTTGATGGCACCAATGAAACTAGTGGAAACTTAGCTTCTGGTCCTCAAGAACATGTTGGCAATTCAGATGGAGTTGATACAGCACCAGCTGCAATCAGTGAGCCACAACCGGTGAAGTTGAGTGTGCCGTCTGACCAGAAAATGAACTCTCGCGGAGGAGGACTCTTGGAAAGAATAGCAGCTAGAGCAGGATTTAATGCCCCAAAGCTGAACACGGAGAGCCTTAGACCTGCTGATCTGAGGCAGAATCAAGGAGTTCGCTCTCCTTATTTAACTATTCCTCCTGGTCTTAGTCCAACAACCCTGCTAGAGTCTCCTGTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327055" ref_strand="+" ref_description="SGN-E327055 [cTOC-18-L15]">
      <seq>gttgcaggtgaacccgtccaatttttctcagcaaggatttccaaacattgaagtttcggttcattcccagaattcgcttgtatctcaccgtgtggaagctacacaaaacccgactcagaatggaacgcttcagcaatcatctgatttccctagattttctgctgagaaggatgtcatggctaataatgttaccctagattctaggacttttcagacagttggtagtgctgtggaccattctccacctctcgatgaaccgcaagatgaggacattgatcaaagaggaggtggagatccaaatgttgctggtgccccagctgaagatggttataattggcgaaaatatgggcagaaacaagttaaggggagcgagtacccccgaagttattacaagtgcacacatccaacctgtccagtcaagaagaaagtggagcgatctccagagggtcatattactgagattatatacaagggagcccacaatcacccaaaacccccacctaaccgtagatcagcccttggatccacaaattcacttggtgacctacaggtggacggtgcagaacaaggtgcaagtggtgttaatggtgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="39555" stop="40748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39855" g_stop="40448" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E327055" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39855" e_stop="40448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCAGGTGAACCCGTCCAATTTTTCTCAGCAAGGATTTCCAAACATTGAAGTTTCGGTTCATTCCCAGAATTCGCTTGTATCTCACCGTGTGGAAGCTACACAAAACCCGACTCAGAATGGAACGCTTCAGCAATCATCTGATTTCCCTAGATTTTCTGCTGAGAAGGATGTCATGGCTAATAATGTTACCCTAGATTCTAGGACTTTTCAGACAGTTGGTAGTGCTGTGGACCATTCTCCACCTCTCGATGAACCGCAAGATGAGGACATTGATCAAAGAGGAGGTGGAGATCCAAATGTTGCTGGTGCCCCAGCTGAAGATGGTTATAATTGGCGAAAATATGGGCAGAAACAAGTTAAGGGGAGCGAGTACCCCCGAAGTTATTACAAGTGCACACATCCAACCTGTCCAGTCAAGAAGAAAGTGGAGCGATCTCCAGAGGGTCATATTACTGAGATTATATACAAGGGAGCCCACAATCACCCAAAACCCCCACCTAACCGTAGATCAGCCCTTGGATCCACAAATTCACTTGGTGACCTACAGGTGGACGGTGCAGAACAAGGTGCAAGTGGTGTTAATGGTGATCT</genome_strand>
        <mrna_strand>GTTGCAGGTGAACCCGTCCAATTTTTCTCAGCAAGGATTTCCAAACATTGAAGTTTCGGTTCATTCCCAGAATTCGCTTGTATCTCACCGTGTGGAAGCTACACAAAACCCGACTCAGAATGGAACGCTTCAGCAATCATCTGATTTCCCTAGATTTTCTGCTGAGAAGGATGTCATGGCTAATAATGTTACCCTAGATTCTAGGACTTTTCAGACAGTTGGTAGTGCTGTGGACCATTCTCCACCTCTCGATGAACCGCAAGATGAGGACATTGATCAAAGAGGAGGTGGAGATCCAAATGTTGCTGGTGCCCCAGCTGAAGATGGTTATAATTGGCGAAAATATGGGCAGAAACAAGTTAAGGGGAGCGAGTACCCCCGAAGTTATTACAAGTGCACACATCCAACCTGTCCAGTCAAGAAGAAAGTGGAGCGATCTCCAGAGGGTCATATTACTGAGATTATATACAAGGGAGCCCACAATCACCCAAAACCCCCACCTAACCGTAGATCAGCCCTTGGATCCACAAATTCACTTGGTGACCTACAGGTGGACGGTGCAGAACAAGGTGCAAGTGGTGTTAATGGTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211154" ref_strand="+" ref_description="SGN-E211154 [cLEC-70-E4]">
      <seq>aaacattgaagtttcggttcattcccagaattcgcttgtatctcaccgtgtggaagctacacaaaacccgactcagaatggaacgcttcagcaatcatctgatttccctagattttctgctgagaaggatgtcatggctaataatgttaccctagattctaggacttttcagacagttggtagtgctgtggaccattctccacctctcgatgaaccgcaagatgaggacattgatcaaagaggaggtggagatccaaatgttgctggtgccccagctgaagatggttataattggcgaaaatatgggcagaaacaagttaaggggagcgagtacccccgaagttattacaagtgcacacatccaacctgtccagtcaagaagaaagtggagcgatctccagagggtcatattactgagattatatacaagggagcccacaatcacccaaaacccccacctaaccgtagatcagcccttggatccacaaattcacttggtgacctacaggtggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="39597" stop="40710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39897" g_stop="40410" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E211154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39897" e_stop="40410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTGAAGTTTCGGTTCATTCCCAGAATTCGCTTGTATCTCACCGTGTGGAAGCTACACAAAACCCGACTCAGAATGGAACGCTTCAGCAATCATCTGATTTCCCTAGATTTTCTGCTGAGAAGGATGTCATGGCTAATAATGTTACCCTAGATTCTAGGACTTTTCAGACAGTTGGTAGTGCTGTGGACCATTCTCCACCTCTCGATGAACCGCAAGATGAGGACATTGATCAAAGAGGAGGTGGAGATCCAAATGTTGCTGGTGCCCCAGCTGAAGATGGTTATAATTGGCGAAAATATGGGCAGAAACAAGTTAAGGGGAGCGAGTACCCCCGAAGTTATTACAAGTGCACACATCCAACCTGTCCAGTCAAGAAGAAAGTGGAGCGATCTCCAGAGGGTCATATTACTGAGATTATATACAAGGGAGCCCACAATCACCCAAAACCCCCACCTAACCGTAGATCAGCCCTTGGATCCACAAATTCACTTGGTGACCTACAGGTGGAC</genome_strand>
        <mrna_strand>AAACATTGAAGTTTCGGTTCATTCCCAGAATTCGCTTGTATCTCACCGTGTGGAAGCTACACAAAACCCGACTCAGAATGGAACGCTTCAGCAATCATCTGATTTCCCTAGATTTTCTGCTGAGAAGGATGTCATGGCTAATAATGTTACCCTAGATTCTAGGACTTTTCAGACAGTTGGTAGTGCTGTGGACCATTCTCCACCTCTCGATGAACCGCAAGATGAGGACATTGATCAAAGAGGAGGTGGAGATCCAAATGTTGCTGGTGCCCCAGCTGAAGATGGTTATAATTGGCGAAAATATGGGCAGAAACAAGTTAAGGGGAGCGAGTACCCCCGAAGTTATTACAAGTGCACACATCCAACCTGTCCAGTCAAGAAGAAAGTGGAGCGATCTCCAGAGGGTCATATTACTGAGATTATATACAAGGGAGCCCACAATCACCCAAAACCCCCACCTAACCGTAGATCAGCCCTTGGATCCACAAATTCACTTGGTGACCTACAGGTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393446" ref_strand="+" ref_description="SGN-E393446 [TUS-38-O13]">
      <seq>cccactttaagatggttataattggcgaaaatatgggcagaaacaagttaaggggagcgagtacccccgaagttattactagtgcacacatccaacctgtccagtcaagaagaaagtggagcgatctccagagggtcatattactgagattatatacaagggagcccacaatcacccaaaacccccacctaaccgtagatcagcccttggatccacaaattcacttggtgacctacaggtggacggtgcagaacaaggtgcaagtggtgttaatggtgatctcggtcaggcaaacttccacaaagcacctggtggtggaggaggttttgattgcaggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="39867" stop="40807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40167" g_stop="40507" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E393446" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40167" e_stop="40507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGCTGAAGATGGTTATAATTGGCGAAAATATGGGCAGAAACAAGTTAAGGGGAGCGAGTACCCCCGAAGTTATTACAAGTGCACACATCCAACCTGTCCAGTCAAGAAGAAAGTGGAGCGATCTCCAGAGGGTCATATTACTGAGATTATATACAAGGGAGCCCACAATCACCCAAAACCCCCACCTAACCGTAGATCAGCCCTTGGATCCACAAATTCACTTGGTGACCTACAGGTGGACGGTGCAGAACAAGGTGCAAGTGGTGTTAATGGTGATCTCGGTCAGGCAAACTTCCACAAAGCACCTGGTGGTGGAGGAGGTTTTGATTGGAGGAACA</genome_strand>
        <mrna_strand>CCCACTTTAAGATGGTTATAATTGGCGAAAATATGGGCAGAAACAAGTTAAGGGGAGCGAGTACCCCCGAAGTTATTACTAGTGCACACATCCAACCTGTCCAGTCAAGAAGAAAGTGGAGCGATCTCCAGAGGGTCATATTACTGAGATTATATACAAGGGAGCCCACAATCACCCAAAACCCCCACCTAACCGTAGATCAGCCCTTGGATCCACAAATTCACTTGGTGACCTACAGGTGGACGGTGCAGAACAAGGTGCAAGTGGTGTTAATGGTGATCTCGGTCAGGCAAACTTCCACAAAGCACCTGGTGGTGGAGGAGGTTTTGATTGCAGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206880" ref_strand="+" ref_description="SGN-E206880 [cLEC-33-D24]">
      <seq>ccagctgaagatggttataattggcgaaaatatgggcagaaacaagttaaggggagcgagtacccccgaagttattacaagtgcacacatacaacctgtccagtcaagaagaaagtggagcgatctccaaagggtcatattactgggattatatacaagggagccgacactcacccaacacccccacctaaccgtagatcaggccttggatccacaaattcagttggtgacctacaggtggacggtgcagaacaaggtgcaagtggtgttaatggtgatcttggtcaggcaaacttccacaaagcacctggtggtggaggaggttttgattggcggaacagcactcgtgacgcaaacttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="39868" stop="40830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40168" g_stop="40530" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E206880" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40168" e_stop="40530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCTGAAGATGGTTATAATTGGCGAAAATATGGGCAGAAACAAGTTAAGGGGAGCGAGTACCCCCGAAGTTATTACAAGTGCACACATCCAACCTGTCCAGTCAAGAAGAAAGTGGAGCGATCTCCAGAGGGTCATATTACTGAGATTATATACAAGGGAGCCCACAATCACCCAAAACCCCCACCTAACCGTAGATCAGCCCTTGGATCCACAAATTCACTTGGTGACCTACAGGTGGACGGTGCAGAACAAGGTGCAAGTGGTGTTAATGGTGATCTCGGTCAGGCAAACTTCCACAAAGCACCTGGTGGTGGAGGAGGTTTTGATTGGAGGAACAACAATCGTGATGCAAACTTGGGC</genome_strand>
        <mrna_strand>CCAGCTGAAGATGGTTATAATTGGCGAAAATATGGGCAGAAACAAGTTAAGGGGAGCGAGTACCCCCGAAGTTATTACAAGTGCACACATACAACCTGTCCAGTCAAGAAGAAAGTGGAGCGATCTCCAAAGGGTCATATTACTGGGATTATATACAAGGGAGCCGACACTCACCCAACACCCCCACCTAACCGTAGATCAGGCCTTGGATCCACAAATTCAGTTGGTGACCTACAGGTGGACGGTGCAGAACAAGGTGCAAGTGGTGTTAATGGTGATCTTGGTCAGGCAAACTTCCACAAAGCACCTGGTGGTGGAGGAGGTTTTGATTGGCGGAACAGCACTCGTGACGCAAACTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377718" ref_strand="+" ref_description="SGN-E377718 [TUS-20-K12]">
      <seq>acaacaatcgtgatgcaaacttgggctccgagcactgcaacagatctgcccctttctctgctcagaataacactcgtttggaatcaggtgatgcagtagatgtgtcgtcgaatttttcaaatgatgaagatgaagatgatcgtggaactcatggcagcgtatcacaaggttatgagggtgaaggagatgagtccgagtctaaaagaaggaagcttgagacctactctgcagatatgactggtgctactagagccatcagggagccaagagttgtggttcaaactacaagcgaagtggacatccttgatgatggatatcgctggcgcaagtatgggcaaaaggttgtcaaagggaatccaaatccaaggagttactacaagtgcacaagtgctggctgcaatgtcaggaagcatgttgagagggcctcgcatgacctgaagtcagtgattaccacctacgaagggaagcacaaccacgacgttcctgcagctcgcaacagtagtcatgttaattcaggtgcctccaacactcatccagcttcagttactgcccctgctcaaaaccatttacataggccggaggctgctcaacttcagaatgctatggcgcgatttgacaggcaaccttcattgggctcatttggtctgtcagggaggcccccccagcttggacctaacccaggatttagctatggaatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="40205" stop="41702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40505" g_stop="40712" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40713" i_stop="40814" i_length="102">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40815" g_stop="40973" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="367" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40974" i_stop="41068" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41069" g_stop="41402" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="701" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E377718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40505" e_stop="40712"/>
          <exon e_start="40815" e_stop="40973"/>
          <exon e_start="41069" e_stop="41402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAATCGTGATGCAAACTTGGGCTCCGAGCACTGCAACAGATCTGCCCCTTTCTCTGCTCAGAATAACACTCGTTTGGAATCAGGTGATGCAGTAGATGTGTCGTCGAATTTTTCAAATGATGAAGATGAAGATGATCGTGGAACTCATGGCAGCGTATCACAAGGTTATGAGGGTGAAGGAGATGAGTCCGAGTCTAAAAGAAGGTTTCTATATCATCGCTAGCCTTAATGAATGAGAATTCCATAATTCTATCAAATTTACCTGAGTACTTAACTTTTTATTATCTCTTTGGTAAATATTACTAGGAAGCTTGAGACCTACTCTGCAGATATGACTGGTGCTACTAGAGCCATCAGGGAGCCAAGAGTTGTGGTTCAAACTACAAGCGAAGTGGACATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAAAAGGTTGTCAAAGGGAATCCAAATCCAAGGTTAGTCACATCAATAAAAAAATTTATGACACCAGAATTCCGAATTTTGACTTGTAAAGTTGTTTGCTAAAAATGATGGATTTTCCTTTTGGCAGGAGTTACTACAAGTGCACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTCGCATGACCTGAAGTCAGTGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTACTGCCCCTGCTCAAAACCATTTACATAGGCCGGAGGCTGCTCAACTTCAGAATGCTATGGCGCGATTTGACAGGCAACCTTCATTGGGCTCATTTGGTCTGTCAGGGAGGCCCCCCCAGCTTGGACCTAACCCAGGATTTAGCTATGGAATGAAC</genome_strand>
        <mrna_strand>ACAACAATCGTGATGCAAACTTGGGCTCCGAGCACTGCAACAGATCTGCCCCTTTCTCTGCTCAGAATAACACTCGTTTGGAATCAGGTGATGCAGTAGATGTGTCGTCGAATTTTTCAAATGATGAAGATGAAGATGATCGTGGAACTCATGGCAGCGTATCACAAGGTTATGAGGGTGAAGGAGATGAGTCCGAGTCTAAAAGAAG......................................................................................................GAAGCTTGAGACCTACTCTGCAGATATGACTGGTGCTACTAGAGCCATCAGGGAGCCAAGAGTTGTGGTTCAAACTACAAGCGAAGTGGACATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAAAAGGTTGTCAAAGGGAATCCAAATCCAAG...............................................................................................GAGTTACTACAAGTGCACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTCGCATGACCTGAAGTCAGTGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTACTGCCCCTGCTCAAAACCATTTACATAGGCCGGAGGCTGCTCAACTTCAGAATGCTATGGCGCGATTTGACAGGCAACCTTCATTGGGCTCATTTGGTCTGTCAGGGAGGCCCCCCCAGCTTGGACCTAACCCAGGATTTAGCTATGGAATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231992" ref_strand="+" ref_description="SGN-E231992 [cLED-7-A22]">
      <seq>acaacaatcgtgatgcaaacttgggctccgagcactgcaacagatctgcccctttctctgctcagaataacactcgtttggaatcaggtgatgcagtagatgtgtcgtcgaatttttcaaatgatgaagatgaagatgatcgtggaactcatggcagcgtatcacaaggttatgagggtgaaggagatgagtccgagtctaaaagaaggaagcttgagacctactctgcagatatgactggtgctactagagccatcagggagccaagagttgtggttcaaactacaagcgaagtggacatccttgatgatggatatcgctggcgcaagtatgggcaaaaggttgtcaaagggaatccaaatccaaggagttactacaagtgcacaagtgctggctgcaatgtcaggaagcatgttgagagggcctcgcatgacctgaagtcagtgattaccacctacgaagggaagcacaaccacgacgttcctgcagctcgcaacagtagtcatgttaattcaggtgcctccaacactcatccagcttcagttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="40205" stop="41548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40505" g_stop="40712" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40713" i_stop="40814" i_length="102">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40815" g_stop="40973" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="367" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40974" i_stop="41068" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41069" g_stop="41248" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="547" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E231992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40505" e_stop="40712"/>
          <exon e_start="40815" e_stop="40973"/>
          <exon e_start="41069" e_stop="41248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAATCGTGATGCAAACTTGGGCTCCGAGCACTGCAACAGATCTGCCCCTTTCTCTGCTCAGAATAACACTCGTTTGGAATCAGGTGATGCAGTAGATGTGTCGTCGAATTTTTCAAATGATGAAGATGAAGATGATCGTGGAACTCATGGCAGCGTATCACAAGGTTATGAGGGTGAAGGAGATGAGTCCGAGTCTAAAAGAAGGTTTCTATATCATCGCTAGCCTTAATGAATGAGAATTCCATAATTCTATCAAATTTACCTGAGTACTTAACTTTTTATTATCTCTTTGGTAAATATTACTAGGAAGCTTGAGACCTACTCTGCAGATATGACTGGTGCTACTAGAGCCATCAGGGAGCCAAGAGTTGTGGTTCAAACTACAAGCGAAGTGGACATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAAAAGGTTGTCAAAGGGAATCCAAATCCAAGGTTAGTCACATCAATAAAAAAATTTATGACACCAGAATTCCGAATTTTGACTTGTAAAGTTGTTTGCTAAAAATGATGGATTTTCCTTTTGGCAGGAGTTACTACAAGTGCACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTCGCATGACCTGAAGTCAGTGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTAC</genome_strand>
        <mrna_strand>ACAACAATCGTGATGCAAACTTGGGCTCCGAGCACTGCAACAGATCTGCCCCTTTCTCTGCTCAGAATAACACTCGTTTGGAATCAGGTGATGCAGTAGATGTGTCGTCGAATTTTTCAAATGATGAAGATGAAGATGATCGTGGAACTCATGGCAGCGTATCACAAGGTTATGAGGGTGAAGGAGATGAGTCCGAGTCTAAAAGAAG......................................................................................................GAAGCTTGAGACCTACTCTGCAGATATGACTGGTGCTACTAGAGCCATCAGGGAGCCAAGAGTTGTGGTTCAAACTACAAGCGAAGTGGACATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAAAAGGTTGTCAAAGGGAATCCAAATCCAAG...............................................................................................GAGTTACTACAAGTGCACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTCGCATGACCTGAAGTCAGTGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711206" ref_strand="+" ref_description="SGN-E711206 [FB01BC04]">
      <seq>cgtgtaattcatggcagcgtatcacaaggttatgagggtgaaggagatgagtccgagtctaaaagaaggaagcttgagacctactctgcagatatgactggtgctactagagccatcagggagccaagagttgtggttcaaactacaagcgaagtggacatccttgatgatggatatcgctggcgcaagtatgggcaaaaggttgtcaaagggaatccaaatccaaggagttactacaagtgcacaagtgctggctgcaatgtcaggaagcatgttgagagggcctcgcatgacctgaagtcagtgattaccacctacgaagggaagcacaaccacgacgttcctgcagctcgcaacagtagtcatgttaattcaggtgcctccaacactcatccagcttcagttactgcccctgctcaaaaccatttacataggccggaggctgctcaacttcagaatgctatggcgcgatttgacaggcaaccttcattgggctcatttggtctgtcagggaggcccccccagcttggacctaacccaggatttagctatggaatgaaccagcaaggcggcctatccagtctagcaatggccggatttcatcctaatcaaaacaagccaggggaggttcctatgcatccatatctaggacagccgcgacccatgcatgatatgggatttatgttcccaaaggaagaaccaaaggtggaacctctgtcagatcctggcccaacagcttatcagcaatttttgaacagtttgtcgcttggacctcagatgtaaatttacagtttttgtcttctctaaagaacagaaagttacagatgctgattttggtacttaatgggcatacctcccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="40345" stop="42001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40645" g_stop="40712" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40713" i_stop="40814" i_length="102">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40815" g_stop="40973" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="227" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40974" i_stop="41068" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41069" g_stop="41701" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="860" r_length="633" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E711206" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40645" e_stop="40712"/>
          <exon e_start="40815" e_stop="40973"/>
          <exon e_start="41069" e_stop="41701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGAACTCATGGCAGCGTATCACAAGGTTATGAGGGTGAAGGAGATGAGTCCGAGTCTAAAAGAAGGTTTCTATATCATCGCTAGCCTTAATGAATGAGAATTCCATAATTCTATCAAATTTACCTGAGTACTTAACTTTTTATTATCTCTTTGGTAAATATTACTAGGAAGCTTGAGACCTACTCTGCAGATATGACTGGTGCTACTAGAGCCATCAGGGAGCCAAGAGTTGTGGTTCAAACTACAAGCGAAGTGGACATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAAAAGGTTGTCAAAGGGAATCCAAATCCAAGGTTAGTCACATCAATAAAAAAATTTATGACACCAGAATTCCGAATTTTGACTTGTAAAGTTGTTTGCTAAAAATGATGGATTTTCCTTTTGGCAGGAGTTACTACAAGTGCACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTCGCATGACCTGAAGTCAGTGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTACTGCCCCTGCTCAAAACCATTTACATAGGCCGGAGGCTGCTCAACTTCAGAATGCTATGGCGCGATTTGACAGGCAACCTTCATTGGGCTCATTTGGTCTGTCAGGGAGGCCCCCCCAGCTTGGACCTAACCCAGGATTTAGCTATGGAATGAACCAGCAAGGCGGCCTATCCAGTCTAGCAATGGCCGGATTTCATCCTAATCAAAACAAGCCAGGGGAGGTTCCTATGCATCCATATCTAGGACAGCCGCGACCCATGCATGATATGGGATTTATGTTCCCAAAGGAAGAACCAAAGGTGGAACCTCTGTCAGATCCTGGCCCAACAGCTTATCAGCAATTTTTGAACAGTTTGTCGCTTGGACCTCAGATGTAAATTTACAGTTTTTGTCTTCTCTAAAGAACAGAAAGTTAGAGATGCTGATTTTGGTACTTAATGGGCATACCTCCCTA</genome_strand>
        <mrna_strand>CGTGTAATTCATGGCAGCGTATCACAAGGTTATGAGGGTGAAGGAGATGAGTCCGAGTCTAAAAGAAG......................................................................................................GAAGCTTGAGACCTACTCTGCAGATATGACTGGTGCTACTAGAGCCATCAGGGAGCCAAGAGTTGTGGTTCAAACTACAAGCGAAGTGGACATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAAAAGGTTGTCAAAGGGAATCCAAATCCAAG...............................................................................................GAGTTACTACAAGTGCACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTCGCATGACCTGAAGTCAGTGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTACTGCCCCTGCTCAAAACCATTTACATAGGCCGGAGGCTGCTCAACTTCAGAATGCTATGGCGCGATTTGACAGGCAACCTTCATTGGGCTCATTTGGTCTGTCAGGGAGGCCCCCCCAGCTTGGACCTAACCCAGGATTTAGCTATGGAATGAACCAGCAAGGCGGCCTATCCAGTCTAGCAATGGCCGGATTTCATCCTAATCAAAACAAGCCAGGGGAGGTTCCTATGCATCCATATCTAGGACAGCCGCGACCCATGCATGATATGGGATTTATGTTCCCAAAGGAAGAACCAAAGGTGGAACCTCTGTCAGATCCTGGCCCAACAGCTTATCAGCAATTTTTGAACAGTTTGTCGCTTGGACCTCAGATGTAAATTTACAGTTTTTGTCTTCTCTAAAGAACAGAAAGTTACAGATGCTGATTTTGGTACTTAATGGGCATACCTCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711096" ref_strand="+" ref_description="SGN-E711096 [FB01AA09]">
      <seq>cctgtaattcatggcagcgtatcacaaggttatgagggtgaaggagatgagtccgagtctaaaagaaggaagcttgagacctactctgcagatatgactggtgctactagagccatcagggagccaagagttgtggttcaaactacaagcgaagtggacatccttgatgatggatatcgctggcgcaagtatgggcaaaaggttgtcaaagggaatccaaatccaaggagttactacaagtgcacaagtgctggctgcaatgtcaggaagcatgttgagagggcctcgcatgacctgaagtcagtgattaccacctacgaagggaagcacaaccacgacgttcctgcagctcgcaacagtagtcatgttaattcaggtgcctccaacactcatccagcttcagttactgcccctgctcaaaaccatttacataggccggaggctgctcaacttcagaatgctatggcgcgatttgacaggcaaccttcattgggctcatttggtctgtcagggaggcccccccagcttggacctaacccaggatttagctatggaatgaaccagcaaggcggcctatccagtctagcaatggccggatttcatcctaatcaaaacaagccaggggaggttcctatgcatccatatctaggacagccgcgacccatgcatgatatgggatttatgttcccaaaggaagaaccaaaggtggaacctctgtcagatcctggcccaacagcttatcagcaatttttgaacagtttgtcgcttggacctcagatgtaaatttacagtttttgtcttctctaaagaacagaaagttagagatgctgattttggtacttaatggggcatacctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="40345" stop="41999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40645" g_stop="40712" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40713" i_stop="40814" i_length="102">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40815" g_stop="40973" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="227" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40974" i_stop="41068" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41069" g_stop="41699" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="859" r_length="632" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E711096" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40645" e_stop="40712"/>
          <exon e_start="40815" e_stop="40973"/>
          <exon e_start="41069" e_stop="41699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGAACTCATGGCAGCGTATCACAAGGTTATGAGGGTGAAGGAGATGAGTCCGAGTCTAAAAGAAGGTTTCTATATCATCGCTAGCCTTAATGAATGAGAATTCCATAATTCTATCAAATTTACCTGAGTACTTAACTTTTTATTATCTCTTTGGTAAATATTACTAGGAAGCTTGAGACCTACTCTGCAGATATGACTGGTGCTACTAGAGCCATCAGGGAGCCAAGAGTTGTGGTTCAAACTACAAGCGAAGTGGACATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAAAAGGTTGTCAAAGGGAATCCAAATCCAAGGTTAGTCACATCAATAAAAAAATTTATGACACCAGAATTCCGAATTTTGACTTGTAAAGTTGTTTGCTAAAAATGATGGATTTTCCTTTTGGCAGGAGTTACTACAAGTGCACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTCGCATGACCTGAAGTCAGTGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTACTGCCCCTGCTCAAAACCATTTACATAGGCCGGAGGCTGCTCAACTTCAGAATGCTATGGCGCGATTTGACAGGCAACCTTCATTGGGCTCATTTGGTCTGTCAGGGAGGCCCCCCCAGCTTGGACCTAACCCAGGATTTAGCTATGGAATGAACCAGCAAGGCGGCCTATCCAGTCTAGCAATGGCCGGATTTCATCCTAATCAAAACAAGCCAGGGGAGGTTCCTATGCATCCATATCTAGGACAGCCGCGACCCATGCATGATATGGGATTTATGTTCCCAAAGGAAGAACCAAAGGTGGAACCTCTGTCAGATCCTGGCCCAACAGCTTATCAGCAATTTTTGAACAGTTTGTCGCTTGGACCTCAGATGTAAATTTACAGTTTTTGTCTTCTCTAAAGAACAGAAAGTTAGAGATGCTGATTTTGGTACTTAAT-GGGCATACCTCCC</genome_strand>
        <mrna_strand>CCTGTAATTCATGGCAGCGTATCACAAGGTTATGAGGGTGAAGGAGATGAGTCCGAGTCTAAAAGAAG......................................................................................................GAAGCTTGAGACCTACTCTGCAGATATGACTGGTGCTACTAGAGCCATCAGGGAGCCAAGAGTTGTGGTTCAAACTACAAGCGAAGTGGACATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAAAAGGTTGTCAAAGGGAATCCAAATCCAAG...............................................................................................GAGTTACTACAAGTGCACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTCGCATGACCTGAAGTCAGTGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTACTGCCCCTGCTCAAAACCATTTACATAGGCCGGAGGCTGCTCAACTTCAGAATGCTATGGCGCGATTTGACAGGCAACCTTCATTGGGCTCATTTGGTCTGTCAGGGAGGCCCCCCCAGCTTGGACCTAACCCAGGATTTAGCTATGGAATGAACCAGCAAGGCGGCCTATCCAGTCTAGCAATGGCCGGATTTCATCCTAATCAAAACAAGCCAGGGGAGGTTCCTATGCATCCATATCTAGGACAGCCGCGACCCATGCATGATATGGGATTTATGTTCCCAAAGGAAGAACCAAAGGTGGAACCTCTGTCAGATCCTGGCCCAACAGCTTATCAGCAATTTTTGAACAGTTTGTCGCTTGGACCTCAGATGTAAATTTACAGTTTTTGTCTTCTCTAAAGAACAGAAAGTTAGAGATGCTGATTTTGGTACTTAATGGGGCATACCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275691" ref_strand="+" ref_description="SGN-E275691 [cLEN-18-H13]">
      <seq>ggacatccttgatgatggatatcgctggcgcaagtatgggcaaaaggttgtcaaagggaatccaaatccaaggagttactacaagtgcacaagtgctggctgcaatgtcaggaagcatgttgagagggcctcgcatgacctgaagtcagtgattaccacctacgaagggaagcacaaccacgacgttcctgcagctcgcaacagtagtcatgttaattcaggtgcctccaacactcatccagcttcagttactgcccctgctcaaaaccatttacataggccggaggctgctcaacttcagaatgctatggcgcgatttgacaggcaaccttcattgggctcatttggtctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="40602" stop="41650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40902" g_stop="40973" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40974" i_stop="41068" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41069" g_stop="41350" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="354" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E275691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40902" e_stop="40973"/>
          <exon e_start="41069" e_stop="41350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAAAAGGTTGTCAAAGGGAATCCAAATCCAAGGTTAGTCACATCAATAAAAAAATTTATGACACCAGAATTCCGAATTTTGACTTGTAAAGTTGTTTGCTAAAAATGATGGATTTTCCTTTTGGCAGGAGTTACTACAAGTGCACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTCGCATGACCTGAAGTCAGTGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTACTGCCCCTGCTCAAAACCATTTACATAGGCCGGAGGCTGCTCAACTTCAGAATGCTATGGCGCGATTTGACAGGCAACCTTCATTGGGCTCATTTGGTCTGTC</genome_strand>
        <mrna_strand>GGACATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAAAAGGTTGTCAAAGGGAATCCAAATCCAAG...............................................................................................GAGTTACTACAAGTGCACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTCGCATGACCTGAAGTCAGTGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTACTGCCCCTGCTCAAAACCATTTACATAGGCCGGAGGCTGCTCAACTTCAGAATGCTATGGCGCGATTTGACAGGCAACCTTCATTGGGCTCATTTGGTCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377717" ref_strand="+" ref_description="SGN-E377717 [TUS-20-K12](-)">
      <seq>cacaagtgctggctgcaatgtcaggaagcatgttgagagggccttgcatgacctgaagtcagtgattaccacctacgaagggaagcacaaccacgacgttcctgcagctcgcaacagtagtcatgttaattcaggtgcctccaacactcatccagcttcagttactgcccctgctcaaaaccatttacataggccggaggctggtcaacttcagaatgctatggcgcgatttgacaggcaaccttcattggggtcatttggtttgtcagggaggcccccccagcttggacctaacccaggatttagctatggaatgaaccagcaaggcggcctatccagtttagcaatggccggatttcatcctaatcaaaacaagccaggggaggttcctatgcatccatatttaggacaaccgcgacccatgcatgatatgggatttatgttcccaaaggaagaaccaaaggtggaacctttgtcagattctggcccaacagcttatcagcaatttttgaacagtttgtcgcttggacctcaaatgtaaatttacagtttttgttttttttaaagaacaaaaagttaaaaatgctgattttggtacttaatgggcatacctccctacacagagtcctataatacaactttttgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="40784" stop="42030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41084" g_stop="41730" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="666"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E377717" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41084" e_stop="41730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTCGCATGACCTGAAGTCAGTGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTACTGCCCCTGCTCAAAACCATTTACATAGGCCGGAGGCTGCTCAACTTCAGAATGCTATGGCGCGATTTGACAGGCAACCTTCATTGGGCTCATTTGGTCTGTCAGGGAGGCCCCCCCAGCTTGGACCTAACCCAGGATTTAGCTATGGAATGAACCAGCAAGGCGGCCTATCCAGTCTAGCAATGGCCGGATTTCATCCTAATCAAAACAAGCCAGGGGAGGTTCCTATGCATCCATATCTAGGACAGCCGCGACCCATGCATGATATGGGATTTATGTTCCCAAAGGAAGAACCAAAGGTGGAACCTCTGTCAGATCCTGGCCCAACAGCTTATCAGCAATTTTTGAACAGTTTGTCGCTTGGACCTCAGATGTAAATTTACAGTTTTTGTCTTCTCTAAAGAACAGAAAGTTAGAGATGCTGATTTTGGTACTTAATGGGCATACCTCCCTACACAGAGTCCTATAATACAACTTTTTGAA</genome_strand>
        <mrna_strand>CACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTTGCATGACCTGAAGTCAGTGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTACTGCCCCTGCTCAAAACCATTTACATAGGCCGGAGGCTGGTCAACTTCAGAATGCTATGGCGCGATTTGACAGGCAACCTTCATTGGGGTCATTTGGTTTGTCAGGGAGGCCCCCCCAGCTTGGACCTAACCCAGGATTTAGCTATGGAATGAACCAGCAAGGCGGCCTATCCAGTTTAGCAATGGCCGGATTTCATCCTAATCAAAACAAGCCAGGGGAGGTTCCTATGCATCCATATTTAGGACAACCGCGACCCATGCATGATATGGGATTTATGTTCCCAAAGGAAGAACCAAAGGTGGAACCTTTGTCAGATTCTGGCCCAACAGCTTATCAGCAATTTTTGAACAGTTTGTCGCTTGGACCTCAAATGTAAATTTACAGTTTTTGTTTTTTTTAAAGAACAAAAAGTTAAAAATGCTGATTTTGGTACTTAATGGGCATACCTCCCTACACAGAGTCCTATAATACAACTTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221047" ref_strand="+" ref_description="SGN-E221047 [cLEL-22-M16](-)">
      <seq>ccccccagcttggacctaacccaggatttagctatggaatgaaccagcaaggcggcctatccagtctagcaatggccggatttcatcctaatcaaaacaagccaggggaggttcctatgcatccatatctaggacagccgcgacccatgcatgatatgggatttatgttcccaaaggaagaaccaaaggtggaacctctgtcagatcctggcccaacagcttatcagcaatttttgaacagtttgtcgcttggacctcagatgtaaatttacagtttttgtcttctctaaagaacagaaagttagagatgctgattttggtacttaatgggcatacctccctacacagagtcctataatacaactttttgaagctatattgtctttgttttaacttctaaataccatataggccgccactcatttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="41059" stop="42085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41359" g_stop="41786" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="443"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E221047" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41359" e_stop="41786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCCAGCTTGGACCTAACCCAGGATTTAGCTATGGAATGAACCAGCAAGGCGGCCTATCCAGTCTAGCAATGGCCGGATTTCATCCTAATCAAAACAAGCCAGGGGAGGTTCCTATGCATCCATATCTAGGACAGCCGCGACCCATGCATGATATGGGATTTATGTTCCCAAAGGAAGAACCAAAGGTGGAACCTCTGTCAGATCCTGGCCCAACAGCTTATCAGCAATTTTTGAACAGTTTGTCGCTTGGACCTCAGATGTAAATTTACAGTTTTTGTCTTCTCTAAAGAACAGAAAGTTAGAGATGCTGATTTTGGTACTTAATGGGCATACCTCCCTACACAGAGTCCTATAATACAACTTTTTGAAGCTATATTGTCTTTGTTTTAACTTCTAAATACCATATAGGCCGCCACTCATTTGAC</genome_strand>
        <mrna_strand>CCCCCCAGCTTGGACCTAACCCAGGATTTAGCTATGGAATGAACCAGCAAGGCGGCCTATCCAGTCTAGCAATGGCCGGATTTCATCCTAATCAAAACAAGCCAGGGGAGGTTCCTATGCATCCATATCTAGGACAGCCGCGACCCATGCATGATATGGGATTTATGTTCCCAAAGGAAGAACCAAAGGTGGAACCTCTGTCAGATCCTGGCCCAACAGCTTATCAGCAATTTTTGAACAGTTTGTCGCTTGGACCTCAGATGTAAATTTACAGTTTTTGTCTTCTCTAAAGAACAGAAAGTTAGAGATGCTGATTTTGGTACTTAATGGGCATACCTCCCTACACAGAGTCCTATAATACAACTTTTTGAAGCTATATTGTCTTTGTTTTAACTTCTAAATACCATATAGGCCGCCACTCATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221387" ref_strand="+" ref_description="SGN-E221387 [cLEL-22-M16](-)">
      <seq>cctatccagtctagcaatggccggatttcatcctaatcaaaacaagccaggggaggttcctatgcatccatatctaggacagccgcgacccatgcatgatatgggatttatgttcccaaaggaagaaccaaaggtggaacctctgtcagatcctggcccaacagcttatcagcaatttttgaacagtttgtcgcttggacctcagatgtaaatttacagtttttgtcttctctaaagaacagaaagttagagatgctgattttggtacttaatgggcatacctccctacacagagtcctataatacaactttttgaagctatattgtctttgttttaacttctaaataccatataggccgccactcatttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="41114" stop="42085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41414" g_stop="41786" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="388"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E221387" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41414" e_stop="41786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCCAGTCTAGCAATGGCCGGATTTCATCCTAATCAAAACAAGCCAGGGGAGGTTCCTATGCATCCATATCTAGGACAGCCGCGACCCATGCATGATATGGGATTTATGTTCCCAAAGGAAGAACCAAAGGTGGAACCTCTGTCAGATCCTGGCCCAACAGCTTATCAGCAATTTTTGAACAGTTTGTCGCTTGGACCTCAGATGTAAATTTACAGTTTTTGTCTTCTCTAAAGAACAGAAAGTTAGAGATGCTGATTTTGGTACTTAATGGGCATACCTCCCTACACAGAGTCCTATAATACAACTTTTTGAAGCTATATTGTCTTTGTTTTAACTTCTAAATACCATATAGGCCGCCACTCATTTGAC</genome_strand>
        <mrna_strand>CCTATCCAGTCTAGCAATGGCCGGATTTCATCCTAATCAAAACAAGCCAGGGGAGGTTCCTATGCATCCATATCTAGGACAGCCGCGACCCATGCATGATATGGGATTTATGTTCCCAAAGGAAGAACCAAAGGTGGAACCTCTGTCAGATCCTGGCCCAACAGCTTATCAGCAATTTTTGAACAGTTTGTCGCTTGGACCTCAGATGTAAATTTACAGTTTTTGTCTTCTCTAAAGAACAGAAAGTTAGAGATGCTGATTTTGGTACTTAATGGGCATACCTCCCTACACAGAGTCCTATAATACAACTTTTTGAAGCTATATTGTCTTTGTTTTAACTTCTAAATACCATATAGGCCGCCACTCATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361710" ref_strand="+" ref_description="SGN-E361710 [cLPP-12-P3]">
      <seq>tagtctcgagtttttttttttttttttttaagagcaggaccatcattgtgagttttaggcaaaagaacaaatacacggaggaggacataaaccttagcctccataggacatggaacttttccatgttacaacctgaaactgttgtcagtatagcaagaagctgaagcacaaacatcaaatgagtggcggcctatatggtatttagaagttaaaacaaagacaatatagcttcaaaaagttgtattataggactttgtgtagggaggtatgcccattaagtaccaaaatcagcatctctaactttctgttctttagagaagacaaaaactgtaaatttacatctgaggtccaagcgacaaactgttcaaaaattgctgataagctgttgggccagactctgacagaggttccacctttggttcttcctttgggaacataaatcccatatcatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="120425" stop="41205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41967" g_stop="41505" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E361710" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41967" e_stop="41505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTGAAACTTTTTTTCTT-AAATATAAGAGCAAGGCCATCATTGTGCGTTTTAGGCAAAAGAACAAATACACGGAGGAGGACATAAACCTTAGCCTCCAAAATACGATAGGACATGGAACTTTTCCATGTTACAACCTGAAACTGTTTGTCAGTATAGCAAGAAGCTGAAGCACAAACGTCAAATGAGTGGCGGCCTATATGGTATTTAGAAGTTAAAACAAAGACAATATAGCTTCAAAAAGTTGTATTATAGGACTCTGTGTAGGGAGGTATGCCCATTAAGTACCAAAATCAGCATCTCTAACTTTCTGTTCTTTAGAGAAGACAAAAACTGTAAATTTACATCTGAGGTCCAAGCGACAAACTGTTCAAAAATTGCTGATAAGCTGTTGGGCCAGGATCTGACAGAGGTTCCACCTTTGGTTCTTCCTTTGGGAACATAAATCCCATATCATGCAT</genome_strand>
        <mrna_strand>TAGTCTCGAGTTTTTTTTTTTTTTTTTTTAAGAGCAGGACCATCATTGTGAGTTTTAGGCAAAAGAACAAATACACGGAGGAGGACATAAACCTTAGCCTCC-A-------TAGGACATGGAACTTTTCCATGTTACAACCTGAAACTG-TTGTCAGTATAGCAAGAAGCTGAAGCACAAACATCAAATGAGTGGCGGCCTATATGGTATTTAGAAGTTAAAACAAAGACAATATAGCTTCAAAAAGTTGTATTATAGGACTTTGTGTAGGGAGGTATGCCCATTAAGTACCAAAATCAGCATCTCTAACTTTCTGTTCTTTAGAGAAGACAAAAACTGTAAATTTACATCTGAGGTCCAAGCGACAAACTGTTCAAAAATTGCTGATAAGCTGTTGGGCCAGACTCTGACAGAGGTTCCACCTTTGGTTCTTCCTTTGGGAACATAAATCCCATATCATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745819" ref_strand="+" ref_description="SGN-E745819 [GI|47105051]">
      <seq>gacggcgacaagttaacctactgagaagaaagttgttaaatttacactcaatttcgtaatgcatgctggtggaatcgccggttatcctccgacgaaaagccggtgaaaaattcctcagaaatgtcgggaggggagtacggggatcacaacattttgttacgttctacttcatcggcgtcggaaggcgatgtggaaagccagtcatcgccgaggagaacgaataccagaagcattaaggatctattgaagaggttagatcgaggattttctggtcggcgatcatcggatagggatcatcaccactcctcgtcgccttcgccttctaatcgccgcggtgtttcatctactgcggatgaaattctaggggatagtgctccgccggaatgggcgatgttgcttgttggatgtctccttggccttgctactggcctttgtgttgccgggtttaatcgaggggtacatgtaatacatgagtgggcatgggctggtactccttatgacggtgctgcttggcttcgtttgcaaaggctagctgatacttggcatcggatacttttaataccagttttgggtggagtcattgttggcatgttgcatggtctgctcggaatattggaccaaataacacagtctagctctactcagggacaaggatttgatttgattgctggaatcttccctacagtgaaggccactcaagctgctataactctgggcactggttgttccttgggtcctgaaggtcctagtgtagatatagggaaatcatgtgcctatggatgctcaatgatgatggaaaacaaccgggaaagaagaatagctcttattgcagctggtgcagctgctggaatttcttcaggtttcaatgcagcggtagctggctctttctttgcaattgaaacagttttaagaccactccgtgctgaaaattcacccccttttacaactgcgatgatcatattggcttctgttatatcatcaactgtatcaaatgcagtacttggggaaaaacaggctttcacagtgcccacgtatgatatgaaatctgctgccgagcttccattgtatttgatactggggatgctgtgtggagtagtaagtgttgttttcactcgattggtgtcgtggttcaccaaggggtttcagttcctcaaggaaaagtttggactttctgatgttgtctgccctgctttggggggtttaggagctggtgtaatagctctgagatatcctggaattctctattggggtttcactaatgttgatgaaatcctacatactgggaaaactgcatctgcacctggaattggatggccagctcaattagttgctgcaaaagtcgtggccactgctttgtgcaaagggtctggccttgttggtggattgtatgcaccaagcttaatgataggtgctgctgtaggtgctgtatttggagggttagccggggaactaattaattcagctattccagggaatgctgctattgcccagccgcaggcatatgcactggtggggatggctgctacactagcttcagtttgctcagtgcctttgacgtcagtgcttttattgtttgagttgacaaaagattatagaattttgcttcctctcatgggtgctgttgggctggcaatatgggtgccttccgttaccgaccagccaaatgaagcggagtcatcagaagccaagtttgcatcaaaaggttactctattctttcaccaactgatgaaaataatgaagggaatggttcgaggcaatctggtgagagaaataacttggaactaatggaggttcataacagtcatgaatcatttgatgaaggtctcattttagaagatctaaaggtttctcaggccatgtcaaatgattatttaaaggtctctccaagccaaactgtgaaagaagcattagaatgcatgcatgacggccgacagagttgcgttcttgtggttgatgctgaaggttacttggaaggaattttaacatatggtgacgtgaaaaggagtttgtttaagaaccatggggattcttccaacaaagatttatcagtcacagatgcaaatacttgtcttgtgtcctctatatgcacaaaagggataagctatcgtggccaagattgtggactcctaacttgttatcctgatacggatctagcaattgcaaagcaactaatggaggcaaaaggaattaaacaattgcctgtggtcaagcgtggtggagaattcagaagagaaagaaagcgcagagttattgctcttctgcattatgattcggtagaggagacgatcaggcgtgaagtgagtcaccgaaagtcggtctaccagcagaatgaagaagaaaaagataagcagatcataacgaatggccattaattgttcaaggtactgtatatcaccagcaagtttcaacaagaaaatttgtgtttgttctactttggcatcaatctgagtctggaaagcaagcttcaacaagaaattacgatcttagttggtcatcagtaggtaatatccaatttactgtatattcttgacttaattatgtgtgcagaagttgaggttccttcctgtttgtttctggagcgaacatgctgcaccaggctgccaacagagccggagagcgtaatagcatgagttttcctcaaatagttttagttgtacttatcagaaaggcagttttcggtgtaaatttgacattttgtacatgaaacatatgcttggtagatcaaggtaacaccaaaatgtgaaatcgtcatggactaatatatatacacaaattgagaggtaactagctgatattgtattcatatatgtatcttttgatatgttaaaattaattttactattgggtgggttccctttttatccatttacacctgttgttgtggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="51452" stop="42143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51152" g_stop="50697" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50696" i_stop="49995" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49994" g_stop="49592" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="859" r_length="403" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49591" i_stop="48796" i_length="796">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48795" g_stop="48601" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="860" r_stop="1054" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48600" i_stop="47422" i_length="1179">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47421" g_stop="46967" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1055" r_stop="1509" r_length="455" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46966" i_stop="46874" i_length="93">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46873" g_stop="46769" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1510" r_stop="1614" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46768" i_stop="44812" i_length="1957">
            <donor d_prob="0.746" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44811" g_stop="44581" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1615" r_stop="1845" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44580" i_stop="44421" i_length="160">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44420" g_stop="44208" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1846" r_stop="2058" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44207" i_stop="44058" i_length="150">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44057" g_stop="43825" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="2059" r_stop="2291" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="43824" i_stop="43038" i_length="787">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="43037" g_stop="42448" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="2292" r_stop="2881" r_length="590" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2886" polyA_stop="2900"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E745819" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2881</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51152" e_stop="50697"/>
          <exon e_start="49994" e_stop="49592"/>
          <exon e_start="48795" e_stop="48601"/>
          <exon e_start="47421" e_stop="46967"/>
          <exon e_start="46873" e_stop="46769"/>
          <exon e_start="44811" e_stop="44581"/>
          <exon e_start="44420" e_stop="44208"/>
          <exon e_start="44057" e_stop="43825"/>
          <exon e_start="43037" e_stop="42448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGCGACAAGTTAACCTACTGAGAAGAAAGTTGTTAAATTTACACTCAATTTCGTAATGCATGCTGGTGGAATCGCCGGTTATCCTCCGACGAAAAGCCGGTGAAAAATTCCTCAGAAATGTCGGGAGGGGAGTACGGGGATCACAACATTTTGTTACGTTCTACTTCATCGGCGTCGGAAGGCGATGTGGAAAGCCAGTCATCGCCGAGGAGAACGAATACCAGAAGCATTAAGGATCTATTGAAGAGGTTAGATCGAGGATTTTCTGGTCGGCGATCATCGGATAGGGATCATCACCACTCCTCGTCGCCTTCGCCTTCTAATCGCCGCGGTGTTTCATCTACTGCGGATGAAATTCTAGGGGATAGTGCTCCGCCGGAATGGGCGATGTTGCTTGTTGGATGTCTCCTTGGCCTTGCTACTGGCCTTTGTGTTGCCGGGTTTAATCGAGGGGTTAGTTTCAGCTTATAGCTTGCATTTTTGTTAAAGCTTATTTTTTGTTCAATAACTGGACGAATTTAGCTAGATTCATTGCTTTTTGCCTATGTTGGCAATTAGTTGTGTCATTTCTATTTCCTATCTCAATTTGCACATGATAGTGATTGATTATAAGATGCTTAGTGTGGAGATTTTGTTGAGTTGGCTTCAGATAGATGTTGTCAGTTAATCACTTGATTTCATTACACCTAATCGTAAACTAAATTAGCGGCGACGAATACTCTATTCCAGTCCGTTTCAGTGCAATAATACATGCATTTTATCTTCTAAAGCAAATTAGAGTTTCCTATCATTACCAAAATCTGAAAATTGTGAATTTGGGAACAGCAAAATGCTGTTGCTTTATGAAATCTGCATGTTATATTTTTCCTGTTATTTAGTTGTGTGTATCGATCCTGGGGTTTCAGTGTTTCCAAAGTAGAGATCTTCAGTAAATGAGTAACGGCAGTTCCTGTGGTTTGCTTTCCTTTTTGGTATGGGGAATCTGCGGATTGAGGGTCTGCTTTTGTGACTTGCAAGCTTTTCTGACCATTTTTGTTGATTAAAGGTGTTGAATTTGGAGAGTTGCTTGTACTGTATTTCTTATGTTGTTAACCAGTAGTCTTTGAACTGTAAATTTTTATTGTATATTGGATGACACCGAGGATATTTGTTTAGGTACATGTAATACATGAGTGGGCATGGGCTGGTACTCCTTATGACGGTGCTGCTTGGCTTCGTTTGCAAAGGCTAGCTGATACTTGGCATCGGATACTTTTAATACCAGTTTTGGGTGGAGTCATTGTTGGCATGTTGCATGGTCTGCTCGGAATATTGGACCAAATAACACAGTCTAGCTCTACTCAGGGACAAGGATTTGATTTGATTGCTGGAATCTTCCCTACAGTGAAGGCCACTCAAGCTGCTATAACTCTGGGCACTGGTTGTTCCTTGGGTCCTGAAGGTCCTAGTGTAGATATAGGGAAATCATGTGCCTATGGATGCTCAATGATGATGGAAAACAACCGGGAAAGAAGAATAGCTCTTATTGCAGCTGGTGCAGCTGCTGGAATTTCTTCAGGTATGTTTTTTCTTATTAAGAAGTATCTGAACCAAGAAATTTTTCTTATTCACTTTCAAAGTAGTGCAGAATATTAGGCCCTTAGCGAATTATATGTTTGGAAGTTTTTTAGTTTGTATGTAATCTCTGAGATGATATCTCTCAGAGATATTCTAGAGACATTGCCAAAGATGAGATATTGTTTGTTCGATCTCAAAACCACTATGACTGGATGCTTTTGTGAATTTCACTTGCAAGGAAGGTTTTTTTTGTGTTATAGCTTGTATGGATTATGACTTTAATGCATATTCTAGTGACGCTAAGAAGAGAACTCTCATGCCGTCCCACCTTTCTTCATTCCCAAAAGACTTCTTTTTCTCTTTCTCAAAAAATGAAATTGTGTTGTCAAAATAGGCAGTCACCTTGGAGCCAAATTTCCGACAAGTCCTTTGAGCTGCAAGGTTCAATATGGGTCTCAATATCAAAGGAGTAGAAACTATTCCCCCTTAGCTAATATGACTTTGTGTGGGTCCCACAGGCCATTATTTACAACAACAACTACAACAACATGAAATCGCACAAGTGGGGTCCGGGGAGGAGTGTGTATGCAGACCTCACCCTATAGAGAGGCCGTTTATCATTGCAGGGAGAAATACTTGGTTATTATTTTTGTCGATGTGTCAAATACATAGTCGGATAGTCTTCTTTAGTGCACTTCTGATACGTGCATATCCATGGGCGTGTACTTATCTGTGTGAATTGTGGCTTGCCTCAGCTGGTTGATGGATCGTTAGGTTTAACATTTTTTGTTCTGCAGGTTTCAATGCAGCGGTAGCTGGCTCTTTCTTTGCAATTGAAACAGTTTTAAGACCACTCCGTGCTGAAAATTCACCCCCTTTTACAACTGCGATGATCATATTGGCTTCTGTTATATCATCAACTGTATCAAATGCAGTACTTGGGGAAAAACAGGCTTTCACAGTGCCCACGTATGATATGAAATCTGCTGCCGGTATTTGATCTAATTCTAGTTTATTTTATTATGGCTAAAACATTACTACTATAGTGCATGAGTATTTCCGTTGGTGTTGTTCTATTTATTTTTTCTATAACAGACACGAGTCAATGACGAGGTGTATTTGCCCTTTCACAGTTTGGCTGCACTCTGCCAGTGTTCATGTTGCATTGTTGAATGAAATTCTTGTAATCAGGGAATTTTGCATATGCATTTCTGATATACTTGTATCATTTCTCGTGAAAATGTTTCCCGATGGTATTCATACTTGCTACTGTCATTCACATGCTAACTTTTGCTAAAAAAAGGGAACGGACAATGTCAAATACGCTTTTCTCTCGTCTCCTATATGTCTAAAGTAACATCTGAGTGTACTGTCTCTTCTCTCCATTGTTATAGTCGTAACATAGAGTCAATTCCTATTGTAATTTTTGGCATGGATACCATGCCAACCTCTCACACATCCTCATCGGGTCATCTGGGCATCTTCTCCTAACATCTTGAACCATCTCTATCTCACTTTCCTCAACTTATCTACCCCAGAGGTCACTCCCACCTTCTCCCAGATATCTTCATTCTCAATCTTATATTTCCTAGTAACTCCACGCATCCACCTTAACATTCTCAATTTCACAACTCTAATTTTTTGAAACATGAGAGTTTTTAACAGGCCAACACTCTATCCCATAAAACATAGTCGGCCTAATCACCACTTTGTAGAACATACCTTTAAGTTTAGGTGAGCCTCTATTTCATCCCCCTCACACCAATACGATGTGTGACATTATTGTTGATCTCCCATTACCTTGCATTGAAGACCCAAGATACTTGAAATGAGCCGTGTATCAAGGCTCACTTCCATGCCAACCTCATGTGTCTCATCACTGAACTTGCACTCCAAGTATTGTTTGTCTCCAAACCTCCAGCCCAGGGTTAACTCCACCGTTATTCTCGTCAATCGGTACTATGTCATTTGGAAATAACAACAGACACCACGGCACCTCACCTTGGATATGGCGTGTCGTAAGTTACATTAAGAGAGAATTTATAATGTGATGTCCGATTTAGATGACTGGGTATCATGTTACTTCATGCTTTACATATTAAACTGTCTTGATTCTCCTATTTTTTTTATGGATGTCTTTCTGAATACTTGAGAATGCTTCCTTTTTGTAGAGCTTCCATTGTATTTGATACTGGGGATGCTGTGTGGAGTAGTAAGTGTTGTTTTCACTCGATTGGTGTCGTGGTTCACCAAGGGGTTTCAGTTCCTCAAGGAAAAGTTTGGACTTTCTGATGTTGTCTGCCCTGCTTTGGGGGGTTTAGGAGCTGGTGTAATAGCTCTGAGATATCCTGGAATTCTCTATTGGGGTTTCACTAATGTTGATGAAATCCTACATACTGGGAAAACTGCATCTGCACCTGGAATTGGATGGCTAGCTCAATTAGTTGCTGCAAAAGTCGTGGCCACTGCTTTGTGCAAAGGGTCTGGCCTTGTTGGTGGATTGTATGCACCAAGCTTAATGATAGGTGCTGCTGTAGGTGCTGTATTTGGAGGGTTAGCCGGGGAACTAATTAATTCAGCTATTCCAGGGAATGCTGCTATTGCCCAGCCGCAGGCATATGCACTGGTCTGATATACTTTTACCTTCCCCAAACAATTATTACACTCCAATGCCGTTTAGGTGGTAAACTTTTTTAATGGATAAGTGTAAACAATGCAGGTGGGGATGGCTGCTACACTAGCTTCAGTTTGCTCAGTGCCTTTGACGTCAGTGCTTTTATTGTTTGAGTTGACAAAAGATTATAGAATTTTGCTTCCTCTCATGGTTAGTCTTGCTGAACAAAAACTCACTAGTTCTAGTTGTTTTTCATGTGTGTTACTAAAAGCTCCCATGCTTGATATAAACACCTATCTTTGTTATCTAATTTCCAAGTTTCTGAGTAACTCAAGTCCGTAACATAGTATCTCTTACTTTCTGAGTAACTCAAGTCTTCTTTGTGAAAAATTGTTGTCATCCTAGGTTAACTTCATAATTTGAGTATGCAATGGACTTCCTTTAATTGTATTGGCTAATTTTTGAGTTACTCACATTCTGAGATCAAGGTTTCCCCGCTTTGCTACATTCTGGTGTTTCTTTACCAGTTTATCTTAGGTAATCATTAAGTATATTCCTGACTTTTACTGTGGCGGTACTGCGGTTCGCATGTATTGATCTTTAACTTAATTTTGAGCTGTGTTTGACCTCCAAAATTTGGATTAAGTGGATCTTTTGGCTACTATCTGAACATTCTCCGGGGAATTCTGTGCTGAAATCACCCTGAGGGAGAGTTTGTGTAGTCAGGTGGTAAATTTGATCTTGGTAACCTTTTTGGTTGGTTAATTTAATCTCTGTAACTTTTCGCCATAAGTTTATGCTAACACGTTGGACTATTGTCCTCTCTACATTTGAGAGGTAAGAGGGCTAAACTATAGGAAACTATGCTGCCATAATAAGGAAACCTTCTATTATATTAAAGGCTTAAGTCATCTGCGGCCCCTTAAAGTTATCCGCATATTTCATTTGGACACCTTATCTTAGGTTTGTTCCAATTGAACACCTTTATTAGTTAAAAAAAATACCTATCGAACATTTTTTGAAAATAAACAAAAAGTAGAGATTGTGTGTAATACAATCGCCACTAACGTGGCATAATATCTAATGAAAAATTGACACGCGGCATTGGGCCATAATAACAATTAGTAAAAATAAATTAGGAAATACTTAAAAGCTATGTGTTCAGAAAAAAGAAAAAAAAAGGCTTTCTTTTTCCCTTTTCTTCTTTGCAGATGCCCAGAACAACCACCCACCCCCGACGTCCATTTTTCTCCATTATTTTTCTCAATACACACACAATTGTTGGTCAAAATTACGTGCACTCCGATAATCATCCTCACTCCACCTTATGAATCTTTAACGATTTCAAAGAAAATAATTTCATATTCGTAATAGTTTTGTCGGAAAAAATGGAATTTCGCCGGAATTATTTTAAGCTCAATTTGATTTTTGTTTTTGATGAAATTCTCTTCCACAACTTAAATGAATATCTTTATCAACAAACTCTTTTAGTTTATTGTGTTTTGACTGGTTATATATTTAATTGATGTTTCTCTGATGACGACAACAACAACGATAATATTGATGATGACGGAATGATGCTATTTGAGAAAGGGGTGTGTCGATGGTGGGAAAGGAATGGTGGACGAGGGTTCTAGGTAATACTATTGAATTGAAAAGTCCCACCGGGAAAGATGAATTGGGGAAGAACTGCCAGCAATTTTTTCTTAAAAAATTCTGTTCATATTATGATTTTTCTCTTGTTGACATGTTCATTCTTTATTGGTCCAAAAAAAGATTTTTTTGGCTTCAAGCGCCTCTTAAATGTGTATTACACTTACAATGCCATGTCATGAAAAAGTATTAAATAAGTACATGTATTAAAGGGTAGAGGTGTTCACTAGGTACAACCCCTAGTTGAGGTGTCTAAGTGAATTATGCAAACAAATTCAAGGGTCCGCAGATGACTTAAGCCTATATTAAATTACATTACAGACATAACGTTACATTATAGTGTACTATATTAAGACTTATCCTTATCGGACTTGTACAAATCTAACTTGCATCTGTGTTTGCTAGTTAGATAATCGCATAGATGTATTTTGCTATTGTAGGTTGCTGTTGAAATGATAAATGGTGTAAAACTTGCAGTTTAAGTCATGCAATTGTTTTAAATGTTCTTTAATAGGGTGCTGTTGGGCTGGCAATATGGGTGCCTTCCGTTACCGACCAGCCAAATGAAGCGGAGTCATCAGAAGCCAAGTTTGCATCAAAAGGTTACTCTATTCTTTCACCAACTGATGAAAATAATGAAGGGAATGGTTCGAGGCAATCTGGTGAGAGAAATAACTTGGAACTAATGGAGGTTCATAACAGTCATGAATCATTTGATGAAGGTCTCATTTTAGAAGATCTAAAGGTACTATCTTTGCGTTGGCATCTAGAATGTGGGAAAAGTTTGCATTTCATGGGATCTTGGTTTTCAATTTTTTGAACAAAACACCACCTGTTTTCTTTTAGGAGACTTATTTTGTGATTTAGGTACTTCCAAGAGTCTAATGTGTATTTCCTTCTATTAGGTTTCTCAGGCCATGTCAAATGATTATTTAAAGGTCTCTCCAAGCCAAACTGTGAAAGAAGCATTAGAATGCATGCATGACGGCCGACAGAGTTGCGTTCTTGTGGTTGATGCTGAAGGTTACTTGGAAGGAATTTTAACATATGGTGACGTGAAAAGGAGTTTGTTTAAGAACCATGGGGATTCTTCCAACAAAGATTTATCAGTCACAGATGTATGTGCTTTAGATTGCCATCATGACAAATGTCTGTTAGTGTTAATTTCTTTTTCTCCCTGATTTAGTGTTCACTTTTCCATCCTTGTCTCCGGGAGATTCAGTCCATGCACCTCCTTTCTTTTCTTACTTTAGCTATTTGATTTACAGGCAAATACTTGTCTTGTGTCCTCTATATGCACAAAAGGGATAAGCTATCGTGGCCAAGATTGTGGACTCCTAACTTGTTATCCTGATACGGATCTAGCAATTGCAAAGCAACTAATGGAGGCAAAAGGAATTAAACAATTGCCTGTGGTCAAGCGTGGTGGAGAATTCAGAAGAGAAAGAAAGCGCAGAGTTATTGCTCTTCTGCATTATGATTCGGTAGAGGAGACGATCAGGTTTTGCAGCTTCTCTATGTAATATCTGATATTATGCTCGTCTGTTGCTCCGTTTTGCTCTGATCCAAGTTTAAACTGTTCCATATGTTTCTATGTGGTATGCAAGTCACAAGAGTAGGAAGTTCTTTTTTCTTTTGGGAGTAAAAAGAAAAGGTAAAAATGGATTTATGGTATGTGTTCTTTCATTAACTGTAGATCCTACTCTGTAGCTTTATTCAGAGGGAATTAAACTGCTAGACGTTTTGGAAATTGAGCAGAAATCTTTATCTTATGAGGGCCTGTAAATGAATGGAACTCGTAGAAGATGTGAACTTAAGTGATAGTTATAGGGTTCTTTTGATATTTGGCGCTAAACTACAGCTTGGTAAAATAGGTTTGAATGACAATACAGCTGTAGCTCGATTGAACACTCATATGGAGCTAAAAGCCCAAGAGGTGAAACTGATCTTAGTCTTTGCCTGAGTTTGGTCGTGTTAGCTTGCTTCTTATACCACCTGTCATTTGCAAAAGAACAATATTATCAAAGAAAGTAAATAAAAAGGGGAGAGAAGAACGTGTTAAAGACAGAAGTGACTCAATCAAGATTATGCAGGTGGAGCTGAACTTTACAAGAGTTTTTCGAATCCTTGTAAGATGATCAAAAACATAGTTCTAAAATGTAAATTGGCTCCCAGCACAGCCTTTGTGCTGATAACTAATAGACTACTCATTTGTGGATTTTGAATTGTTTAGACGTGCTTGGGTTTTGTGTTGTCAGTGTGTTTTCTGAATGTAATTCATCCTACAGGCGTGAAGTGAGTCACCGAAAGTCGGTCTACCAGCAGAATGAAGAAGAAAAAGATAAGCAGATCATAACGAATGGCCATTAATTGTTCAAGGTACTGTATATCACCAGCAAGTTTCAACAAGAAAATTTGTGTTTGTTCTACTTTGGCATCAATCTGAGTCTGGAAAGCAAGCTTCAACAAGAAATTACGATCTTAGTTGGTCATCAGTAGGTAATATCCAATTTACTGTATATTCTTGACTTAATTATGTGTGCAGAAGTTGAGGTTCCTTCCTGTTTGTTTCTGGAGCGAACATGCTGCACCAGGCTGCCAACAGAGCCAGAGAGCGTAATATCATGAGTTTTCCTCAAATAGTTTTAGTTGTACTTATCAGAAAGGCAGTTTTCGGTGTAAATTTGACATTTTGTACATGAAACATATGCTTGGTAGATCAAGGTAACACCAAAATGTGAAATCGTCATGGACTAATATATATACACAAATTGAGAGGTAACTAGCTGATATTGTATTCATATATGTATCTTTTGATATGTTAAAATTAATTTTACTATTGGGTGGGTTCCCTTTTTATCCATTTACACCTGTTGTT</genome_strand>
        <mrna_strand>GACGGCGACAAGTTAACCTACTGAGAAGAAAGTTGTTAAATTTACACTCAATTTCGTAATGCATGCTGGTGGAATCGCCGGTTATCCTCCGACGAAAAGCCGGTGAAAAATTCCTCAGAAATGTCGGGAGGGGAGTACGGGGATCACAACATTTTGTTACGTTCTACTTCATCGGCGTCGGAAGGCGATGTGGAAAGCCAGTCATCGCCGAGGAGAACGAATACCAGAAGCATTAAGGATCTATTGAAGAGGTTAGATCGAGGATTTTCTGGTCGGCGATCATCGGATAGGGATCATCACCACTCCTCGTCGCCTTCGCCTTCTAATCGCCGCGGTGTTTCATCTACTGCGGATGAAATTCTAGGGGATAGTGCTCCGCCGGAATGGGCGATGTTGCTTGTTGGATGTCTCCTTGGCCTTGCTACTGGCCTTTGTGTTGCCGGGTTTAATCGAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGTAATACATGAGTGGGCATGGGCTGGTACTCCTTATGACGGTGCTGCTTGGCTTCGTTTGCAAAGGCTAGCTGATACTTGGCATCGGATACTTTTAATACCAGTTTTGGGTGGAGTCATTGTTGGCATGTTGCATGGTCTGCTCGGAATATTGGACCAAATAACACAGTCTAGCTCTACTCAGGGACAAGGATTTGATTTGATTGCTGGAATCTTCCCTACAGTGAAGGCCACTCAAGCTGCTATAACTCTGGGCACTGGTTGTTCCTTGGGTCCTGAAGGTCCTAGTGTAGATATAGGGAAATCATGTGCCTATGGATGCTCAATGATGATGGAAAACAACCGGGAAAGAAGAATAGCTCTTATTGCAGCTGGTGCAGCTGCTGGAATTTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGCAGCGGTAGCTGGCTCTTTCTTTGCAATTGAAACAGTTTTAAGACCACTCCGTGCTGAAAATTCACCCCCTTTTACAACTGCGATGATCATATTGGCTTCTGTTATATCATCAACTGTATCAAATGCAGTACTTGGGGAAAAACAGGCTTTCACAGTGCCCACGTATGATATGAAATCTGCTGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCCATTGTATTTGATACTGGGGATGCTGTGTGGAGTAGTAAGTGTTGTTTTCACTCGATTGGTGTCGTGGTTCACCAAGGGGTTTCAGTTCCTCAAGGAAAAGTTTGGACTTTCTGATGTTGTCTGCCCTGCTTTGGGGGGTTTAGGAGCTGGTGTAATAGCTCTGAGATATCCTGGAATTCTCTATTGGGGTTTCACTAATGTTGATGAAATCCTACATACTGGGAAAACTGCATCTGCACCTGGAATTGGATGGCCAGCTCAATTAGTTGCTGCAAAAGTCGTGGCCACTGCTTTGTGCAAAGGGTCTGGCCTTGTTGGTGGATTGTATGCACCAAGCTTAATGATAGGTGCTGCTGTAGGTGCTGTATTTGGAGGGTTAGCCGGGGAACTAATTAATTCAGCTATTCCAGGGAATGCTGCTATTGCCCAGCCGCAGGCATATGCACTG.............................................................................................GTGGGGATGGCTGCTACACTAGCTTCAGTTTGCTCAGTGCCTTTGACGTCAGTGCTTTTATTGTTTGAGTTGACAAAAGATTATAGAATTTTGCTTCCTCTCATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGTTGGGCTGGCAATATGGGTGCCTTCCGTTACCGACCAGCCAAATGAAGCGGAGTCATCAGAAGCCAAGTTTGCATCAAAAGGTTACTCTATTCTTTCACCAACTGATGAAAATAATGAAGGGAATGGTTCGAGGCAATCTGGTGAGAGAAATAACTTGGAACTAATGGAGGTTCATAACAGTCATGAATCATTTGATGAAGGTCTCATTTTAGAAGATCTAAAG................................................................................................................................................................GTTTCTCAGGCCATGTCAAATGATTATTTAAAGGTCTCTCCAAGCCAAACTGTGAAAGAAGCATTAGAATGCATGCATGACGGCCGACAGAGTTGCGTTCTTGTGGTTGATGCTGAAGGTTACTTGGAAGGAATTTTAACATATGGTGACGTGAAAAGGAGTTTGTTTAAGAACCATGGGGATTCTTCCAACAAAGATTTATCAGTCACAGAT......................................................................................................................................................GCAAATACTTGTCTTGTGTCCTCTATATGCACAAAAGGGATAAGCTATCGTGGCCAAGATTGTGGACTCCTAACTTGTTATCCTGATACGGATCTAGCAATTGCAAAGCAACTAATGGAGGCAAAAGGAATTAAACAATTGCCTGTGGTCAAGCGTGGTGGAGAATTCAGAAGAGAAAGAAAGCGCAGAGTTATTGCTCTTCTGCATTATGATTCGGTAGAGGAGACGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAAGTGAGTCACCGAAAGTCGGTCTACCAGCAGAATGAAGAAGAAAAAGATAAGCAGATCATAACGAATGGCCATTAATTGTTCAAGGTACTGTATATCACCAGCAAGTTTCAACAAGAAAATTTGTGTTTGTTCTACTTTGGCATCAATCTGAGTCTGGAAAGCAAGCTTCAACAAGAAATTACGATCTTAGTTGGTCATCAGTAGGTAATATCCAATTTACTGTATATTCTTGACTTAATTATGTGTGCAGAAGTTGAGGTTCCTTCCTGTTTGTTTCTGGAGCGAACATGCTGCACCAGGCTGCCAACAGAGCCGGAGAGCGTAATAGCATGAGTTTTCCTCAAATAGTTTTAGTTGTACTTATCAGAAAGGCAGTTTTCGGTGTAAATTTGACATTTTGTACATGAAACATATGCTTGGTAGATCAAGGTAACACCAAAATGTGAAATCGTCATGGACTAATATATATACACAAATTGAGAGGTAACTAGCTGATATTGTATTCATATATGTATCTTTTGATATGTTAAAATTAATTTTACTATTGGGTGGGTTCCCTTTTTATCCATTTACACCTGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744725" ref_strand="+" ref_description="SGN-E744725 [GI|13620221]">
      <seq>gagggatattttggggattaatcgcactctgtcctccacttcccgtcgttagtagcttaaagtcgtaaaaaactcgattccggtagcgacggcgacaagttaacctactgagaagaaagttgttaaatttacactcaatttcgtaatgcatgctggtggaatcgccggttatcctccgacgaaaagccggtgaaaaattcctcagaaatgtcgggaggggagtacggggatcacaacattttgttacgttctacttcatcggcgtcggaaggcgatgtggaaagccagtcatcgccgaggagaacgaataccagaagcattaaggatctattgaagaggttagatcgaggattttctggtcggcgatcatcggatagggatcatcaccactcctcgtcgccttcgccttctaatcgccgcggtgtttcatctactgcggatgaaattctaggggatagtgctccgccggaatgggcgatgttgcttgttggatgtctccttggccttgctactggcctttgtgttgccgggtttaatcgaggggtacatgtaatacatgagtgggcatgggctggtactccttatgacggtgctgcttggcttcgtttgcaaaggctagctgatacttggcatcggatacttttaataccagttttgggtggagtcattgttggcatgttgcatggtctgctcggaatattggaccaaataacacagtctagctctactcagggacaaggatttgatttgattgctggaatcttccctacagtgaaggccactcaagctgctataactctgggcactggttgttccttgggtcctgaaggtcctagtgtagatatagggaaatcatgtgcctatggatgctcaatgatgatggaaaacaaccgggaaagaagaatagctcttattgcagctggtgcagctgctggaatttcttcaggtttcaatgcagcggtagctggctctttctttgcaattgaaacagttttaagaccactccgtgctgaaaattcacccccttttacaactgcgatgatcatattggcttctgttatatcatcaactgtatcaaatgcagtacttggggaaaaacaggctttcacagtgcccacgtatgatatgaaatctgctgccgagcttccattgtatttgatactggggatgctgtgtggagtagtaagtgttgttttcactcgattggtgtcgtggttcaccaaggggtttcagttcctcaaggaaaagtttggactttctgatgttgtctgccctgctttggggggtttaggagctggtgtaatagctctgagatatcctggaattctctattggggtttcactaatgttgatgaaatcctacatactgggaaaactgcatctgcacctggaattggatggctagctcaattagttgctgcaaaagtcgtggccactgctttgtgcaaagggtctggccttgttggtggattgtatgcaccaagcttaatgataggtgctgctgtaggtgctgtatttggagggttagccggggaactaattaattcagctattccagggaatgctgctattgcccagccgcacgcatatgcactggtggggatggctgctacactagcttcagtttgctcagtgcctttgacgtcagtgcttttattgtttgagttgacaaaagattatagaattttgcttcctctcatgggtgctgttgggctggcaatatgggtgccttccgttaccgaccagccaaatgaagcggagtcatcagaagccaagtttgcatcaaaaggttactctattctttcaccaactgatgaaaataatgaagggaatggttcgaggcaatctggtgagagaaataacttggaactaatggaggttcataacagtcatgaatcatttgatgaaggtctcattttagaagatctaaaggtttctcaggccatgtcaaatgattatttaaaggtctctccaagccaaactgtgaaagaagcattagaatgcatgcatgacggccgacagagttgcgttcttgtggttgatgctgaaggttacttggaaggaattttaacatatggtgacgtgaaaaggagtttgtttaagaaccatggggattcttccaacaaagatttatcagtcacagatgcaaatacttgtcttgtgtcctctatatgcacaaaagggataagctatcgtggccaagattgtggactcctaacttgttatcctgatacggatctagcaattgcaaagcaactaatggaggcaaaaggaattaaacaattgcctgtggtcaagcgtggtggagaattcagaagagaaagaaagcgcagagttattgctcttctgcattatgattcggtagaggagacgatcaggcgtgaagtgagtcaccgaaagtcggtctaccagcagaatgaagaagaaaaagataagcagatcataacgaatggccattaattgttcaaggtactgtatatcaccagcaagtttcaacaagaaaatttgtgtttgttctactttggcatcaatctgagtctggaaagcaagcttcaacaagaaattacgatcttagttggtcatcagtaggtaatatccaatttactgtatattcttgacttaattatgtgtgcagaagttgaggttccttcctgtttgtttctggagcgaacataaccaggctgccaacagagccggagagcgtaatagcatgagttttcctcaaatagttttagttgtacttatcagaaaggcagttttcggtgtaaatttgacattttgtacatgaaacatatgcttgctagatcaaggtaacaccaaaatgtgaaatcgtcatgaactaatatatatacacaaattgagaggtaactagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="51538" stop="42237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51239" g_stop="50697" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50696" i_stop="49995" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49994" g_stop="49592" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="946" r_length="403" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49591" i_stop="48796" i_length="796">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48795" g_stop="48601" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="947" r_stop="1141" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48600" i_stop="47422" i_length="1179">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47421" g_stop="46967" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1142" r_stop="1596" r_length="455" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46966" i_stop="46874" i_length="93">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46873" g_stop="46769" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1597" r_stop="1701" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46768" i_stop="44812" i_length="1957">
            <donor d_prob="0.746" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44811" g_stop="44581" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1702" r_stop="1932" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44580" i_stop="44421" i_length="160">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44420" g_stop="44208" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1933" r_stop="2145" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44207" i_stop="44058" i_length="150">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44057" g_stop="43825" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="2146" r_stop="2378" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="43824" i_stop="43038" i_length="787">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="43037" g_stop="42537" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="2379" r_stop="2875" r_length="497" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E744725" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2879</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51239" e_stop="50697"/>
          <exon e_start="49994" e_stop="49592"/>
          <exon e_start="48795" e_stop="48601"/>
          <exon e_start="47421" e_stop="46967"/>
          <exon e_start="46873" e_stop="46769"/>
          <exon e_start="44811" e_stop="44581"/>
          <exon e_start="44420" e_stop="44208"/>
          <exon e_start="44057" e_stop="43825"/>
          <exon e_start="43037" e_stop="42537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGATATTTTGGGGATTAATCGCACTCTGTCCTCCACTTCCCGTCGTTAGTAGCTTAAAGTCGTAAAAAACTCGATTCCGGTAGCGACGGCGACAAGTTAACCTACTGAGAAGAAAGTTGTTAAATTTACACTCAATTTCGTAATGCATGCTGGTGGAATCGCCGGTTATCCTCCGACGAAAAGCCGGTGAAAAATTCCTCAGAAATGTCGGGAGGGGAGTACGGGGATCACAACATTTTGTTACGTTCTACTTCATCGGCGTCGGAAGGCGATGTGGAAAGCCAGTCATCGCCGAGGAGAACGAATACCAGAAGCATTAAGGATCTATTGAAGAGGTTAGATCGAGGATTTTCTGGTCGGCGATCATCGGATAGGGATCATCACCACTCCTCGTCGCCTTCGCCTTCTAATCGCCGCGGTGTTTCATCTACTGCGGATGAAATTCTAGGGGATAGTGCTCCGCCGGAATGGGCGATGTTGCTTGTTGGATGTCTCCTTGGCCTTGCTACTGGCCTTTGTGTTGCCGGGTTTAATCGAGGGGTTAGTTTCAGCTTATAGCTTGCATTTTTGTTAAAGCTTATTTTTTGTTCAATAACTGGACGAATTTAGCTAGATTCATTGCTTTTTGCCTATGTTGGCAATTAGTTGTGTCATTTCTATTTCCTATCTCAATTTGCACATGATAGTGATTGATTATAAGATGCTTAGTGTGGAGATTTTGTTGAGTTGGCTTCAGATAGATGTTGTCAGTTAATCACTTGATTTCATTACACCTAATCGTAAACTAAATTAGCGGCGACGAATACTCTATTCCAGTCCGTTTCAGTGCAATAATACATGCATTTTATCTTCTAAAGCAAATTAGAGTTTCCTATCATTACCAAAATCTGAAAATTGTGAATTTGGGAACAGCAAAATGCTGTTGCTTTATGAAATCTGCATGTTATATTTTTCCTGTTATTTAGTTGTGTGTATCGATCCTGGGGTTTCAGTGTTTCCAAAGTAGAGATCTTCAGTAAATGAGTAACGGCAGTTCCTGTGGTTTGCTTTCCTTTTTGGTATGGGGAATCTGCGGATTGAGGGTCTGCTTTTGTGACTTGCAAGCTTTTCTGACCATTTTTGTTGATTAAAGGTGTTGAATTTGGAGAGTTGCTTGTACTGTATTTCTTATGTTGTTAACCAGTAGTCTTTGAACTGTAAATTTTTATTGTATATTGGATGACACCGAGGATATTTGTTTAGGTACATGTAATACATGAGTGGGCATGGGCTGGTACTCCTTATGACGGTGCTGCTTGGCTTCGTTTGCAAAGGCTAGCTGATACTTGGCATCGGATACTTTTAATACCAGTTTTGGGTGGAGTCATTGTTGGCATGTTGCATGGTCTGCTCGGAATATTGGACCAAATAACACAGTCTAGCTCTACTCAGGGACAAGGATTTGATTTGATTGCTGGAATCTTCCCTACAGTGAAGGCCACTCAAGCTGCTATAACTCTGGGCACTGGTTGTTCCTTGGGTCCTGAAGGTCCTAGTGTAGATATAGGGAAATCATGTGCCTATGGATGCTCAATGATGATGGAAAACAACCGGGAAAGAAGAATAGCTCTTATTGCAGCTGGTGCAGCTGCTGGAATTTCTTCAGGTATGTTTTTTCTTATTAAGAAGTATCTGAACCAAGAAATTTTTCTTATTCACTTTCAAAGTAGTGCAGAATATTAGGCCCTTAGCGAATTATATGTTTGGAAGTTTTTTAGTTTGTATGTAATCTCTGAGATGATATCTCTCAGAGATATTCTAGAGACATTGCCAAAGATGAGATATTGTTTGTTCGATCTCAAAACCACTATGACTGGATGCTTTTGTGAATTTCACTTGCAAGGAAGGTTTTTTTTGTGTTATAGCTTGTATGGATTATGACTTTAATGCATATTCTAGTGACGCTAAGAAGAGAACTCTCATGCCGTCCCACCTTTCTTCATTCCCAAAAGACTTCTTTTTCTCTTTCTCAAAAAATGAAATTGTGTTGTCAAAATAGGCAGTCACCTTGGAGCCAAATTTCCGACAAGTCCTTTGAGCTGCAAGGTTCAATATGGGTCTCAATATCAAAGGAGTAGAAACTATTCCCCCTTAGCTAATATGACTTTGTGTGGGTCCCACAGGCCATTATTTACAACAACAACTACAACAACATGAAATCGCACAAGTGGGGTCCGGGGAGGAGTGTGTATGCAGACCTCACCCTATAGAGAGGCCGTTTATCATTGCAGGGAGAAATACTTGGTTATTATTTTTGTCGATGTGTCAAATACATAGTCGGATAGTCTTCTTTAGTGCACTTCTGATACGTGCATATCCATGGGCGTGTACTTATCTGTGTGAATTGTGGCTTGCCTCAGCTGGTTGATGGATCGTTAGGTTTAACATTTTTTGTTCTGCAGGTTTCAATGCAGCGGTAGCTGGCTCTTTCTTTGCAATTGAAACAGTTTTAAGACCACTCCGTGCTGAAAATTCACCCCCTTTTACAACTGCGATGATCATATTGGCTTCTGTTATATCATCAACTGTATCAAATGCAGTACTTGGGGAAAAACAGGCTTTCACAGTGCCCACGTATGATATGAAATCTGCTGCCGGTATTTGATCTAATTCTAGTTTATTTTATTATGGCTAAAACATTACTACTATAGTGCATGAGTATTTCCGTTGGTGTTGTTCTATTTATTTTTTCTATAACAGACACGAGTCAATGACGAGGTGTATTTGCCCTTTCACAGTTTGGCTGCACTCTGCCAGTGTTCATGTTGCATTGTTGAATGAAATTCTTGTAATCAGGGAATTTTGCATATGCATTTCTGATATACTTGTATCATTTCTCGTGAAAATGTTTCCCGATGGTATTCATACTTGCTACTGTCATTCACATGCTAACTTTTGCTAAAAAAAGGGAACGGACAATGTCAAATACGCTTTTCTCTCGTCTCCTATATGTCTAAAGTAACATCTGAGTGTACTGTCTCTTCTCTCCATTGTTATAGTCGTAACATAGAGTCAATTCCTATTGTAATTTTTGGCATGGATACCATGCCAACCTCTCACACATCCTCATCGGGTCATCTGGGCATCTTCTCCTAACATCTTGAACCATCTCTATCTCACTTTCCTCAACTTATCTACCCCAGAGGTCACTCCCACCTTCTCCCAGATATCTTCATTCTCAATCTTATATTTCCTAGTAACTCCACGCATCCACCTTAACATTCTCAATTTCACAACTCTAATTTTTTGAAACATGAGAGTTTTTAACAGGCCAACACTCTATCCCATAAAACATAGTCGGCCTAATCACCACTTTGTAGAACATACCTTTAAGTTTAGGTGAGCCTCTATTTCATCCCCCTCACACCAATACGATGTGTGACATTATTGTTGATCTCCCATTACCTTGCATTGAAGACCCAAGATACTTGAAATGAGCCGTGTATCAAGGCTCACTTCCATGCCAACCTCATGTGTCTCATCACTGAACTTGCACTCCAAGTATTGTTTGTCTCCAAACCTCCAGCCCAGGGTTAACTCCACCGTTATTCTCGTCAATCGGTACTATGTCATTTGGAAATAACAACAGACACCACGGCACCTCACCTTGGATATGGCGTGTCGTAAGTTACATTAAGAGAGAATTTATAATGTGATGTCCGATTTAGATGACTGGGTATCATGTTACTTCATGCTTTACATATTAAACTGTCTTGATTCTCCTATTTTTTTTATGGATGTCTTTCTGAATACTTGAGAATGCTTCCTTTTTGTAGAGCTTCCATTGTATTTGATACTGGGGATGCTGTGTGGAGTAGTAAGTGTTGTTTTCACTCGATTGGTGTCGTGGTTCACCAAGGGGTTTCAGTTCCTCAAGGAAAAGTTTGGACTTTCTGATGTTGTCTGCCCTGCTTTGGGGGGTTTAGGAGCTGGTGTAATAGCTCTGAGATATCCTGGAATTCTCTATTGGGGTTTCACTAATGTTGATGAAATCCTACATACTGGGAAAACTGCATCTGCACCTGGAATTGGATGGCTAGCTCAATTAGTTGCTGCAAAAGTCGTGGCCACTGCTTTGTGCAAAGGGTCTGGCCTTGTTGGTGGATTGTATGCACCAAGCTTAATGATAGGTGCTGCTGTAGGTGCTGTATTTGGAGGGTTAGCCGGGGAACTAATTAATTCAGCTATTCCAGGGAATGCTGCTATTGCCCAGCCGCAGGCATATGCACTGGTCTGATATACTTTTACCTTCCCCAAACAATTATTACACTCCAATGCCGTTTAGGTGGTAAACTTTTTTAATGGATAAGTGTAAACAATGCAGGTGGGGATGGCTGCTACACTAGCTTCAGTTTGCTCAGTGCCTTTGACGTCAGTGCTTTTATTGTTTGAGTTGACAAAAGATTATAGAATTTTGCTTCCTCTCATGGTTAGTCTTGCTGAACAAAAACTCACTAGTTCTAGTTGTTTTTCATGTGTGTTACTAAAAGCTCCCATGCTTGATATAAACACCTATCTTTGTTATCTAATTTCCAAGTTTCTGAGTAACTCAAGTCCGTAACATAGTATCTCTTACTTTCTGAGTAACTCAAGTCTTCTTTGTGAAAAATTGTTGTCATCCTAGGTTAACTTCATAATTTGAGTATGCAATGGACTTCCTTTAATTGTATTGGCTAATTTTTGAGTTACTCACATTCTGAGATCAAGGTTTCCCCGCTTTGCTACATTCTGGTGTTTCTTTACCAGTTTATCTTAGGTAATCATTAAGTATATTCCTGACTTTTACTGTGGCGGTACTGCGGTTCGCATGTATTGATCTTTAACTTAATTTTGAGCTGTGTTTGACCTCCAAAATTTGGATTAAGTGGATCTTTTGGCTACTATCTGAACATTCTCCGGGGAATTCTGTGCTGAAATCACCCTGAGGGAGAGTTTGTGTAGTCAGGTGGTAAATTTGATCTTGGTAACCTTTTTGGTTGGTTAATTTAATCTCTGTAACTTTTCGCCATAAGTTTATGCTAACACGTTGGACTATTGTCCTCTCTACATTTGAGAGGTAAGAGGGCTAAACTATAGGAAACTATGCTGCCATAATAAGGAAACCTTCTATTATATTAAAGGCTTAAGTCATCTGCGGCCCCTTAAAGTTATCCGCATATTTCATTTGGACACCTTATCTTAGGTTTGTTCCAATTGAACACCTTTATTAGTTAAAAAAAATACCTATCGAACATTTTTTGAAAATAAACAAAAAGTAGAGATTGTGTGTAATACAATCGCCACTAACGTGGCATAATATCTAATGAAAAATTGACACGCGGCATTGGGCCATAATAACAATTAGTAAAAATAAATTAGGAAATACTTAAAAGCTATGTGTTCAGAAAAAAGAAAAAAAAAGGCTTTCTTTTTCCCTTTTCTTCTTTGCAGATGCCCAGAACAACCACCCACCCCCGACGTCCATTTTTCTCCATTATTTTTCTCAATACACACACAATTGTTGGTCAAAATTACGTGCACTCCGATAATCATCCTCACTCCACCTTATGAATCTTTAACGATTTCAAAGAAAATAATTTCATATTCGTAATAGTTTTGTCGGAAAAAATGGAATTTCGCCGGAATTATTTTAAGCTCAATTTGATTTTTGTTTTTGATGAAATTCTCTTCCACAACTTAAATGAATATCTTTATCAACAAACTCTTTTAGTTTATTGTGTTTTGACTGGTTATATATTTAATTGATGTTTCTCTGATGACGACAACAACAACGATAATATTGATGATGACGGAATGATGCTATTTGAGAAAGGGGTGTGTCGATGGTGGGAAAGGAATGGTGGACGAGGGTTCTAGGTAATACTATTGAATTGAAAAGTCCCACCGGGAAAGATGAATTGGGGAAGAACTGCCAGCAATTTTTTCTTAAAAAATTCTGTTCATATTATGATTTTTCTCTTGTTGACATGTTCATTCTTTATTGGTCCAAAAAAAGATTTTTTTGGCTTCAAGCGCCTCTTAAATGTGTATTACACTTACAATGCCATGTCATGAAAAAGTATTAAATAAGTACATGTATTAAAGGGTAGAGGTGTTCACTAGGTACAACCCCTAGTTGAGGTGTCTAAGTGAATTATGCAAACAAATTCAAGGGTCCGCAGATGACTTAAGCCTATATTAAATTACATTACAGACATAACGTTACATTATAGTGTACTATATTAAGACTTATCCTTATCGGACTTGTACAAATCTAACTTGCATCTGTGTTTGCTAGTTAGATAATCGCATAGATGTATTTTGCTATTGTAGGTTGCTGTTGAAATGATAAATGGTGTAAAACTTGCAGTTTAAGTCATGCAATTGTTTTAAATGTTCTTTAATAGGGTGCTGTTGGGCTGGCAATATGGGTGCCTTCCGTTACCGACCAGCCAAATGAAGCGGAGTCATCAGAAGCCAAGTTTGCATCAAAAGGTTACTCTATTCTTTCACCAACTGATGAAAATAATGAAGGGAATGGTTCGAGGCAATCTGGTGAGAGAAATAACTTGGAACTAATGGAGGTTCATAACAGTCATGAATCATTTGATGAAGGTCTCATTTTAGAAGATCTAAAGGTACTATCTTTGCGTTGGCATCTAGAATGTGGGAAAAGTTTGCATTTCATGGGATCTTGGTTTTCAATTTTTTGAACAAAACACCACCTGTTTTCTTTTAGGAGACTTATTTTGTGATTTAGGTACTTCCAAGAGTCTAATGTGTATTTCCTTCTATTAGGTTTCTCAGGCCATGTCAAATGATTATTTAAAGGTCTCTCCAAGCCAAACTGTGAAAGAAGCATTAGAATGCATGCATGACGGCCGACAGAGTTGCGTTCTTGTGGTTGATGCTGAAGGTTACTTGGAAGGAATTTTAACATATGGTGACGTGAAAAGGAGTTTGTTTAAGAACCATGGGGATTCTTCCAACAAAGATTTATCAGTCACAGATGTATGTGCTTTAGATTGCCATCATGACAAATGTCTGTTAGTGTTAATTTCTTTTTCTCCCTGATTTAGTGTTCACTTTTCCATCCTTGTCTCCGGGAGATTCAGTCCATGCACCTCCTTTCTTTTCTTACTTTAGCTATTTGATTTACAGGCAAATACTTGTCTTGTGTCCTCTATATGCACAAAAGGGATAAGCTATCGTGGCCAAGATTGTGGACTCCTAACTTGTTATCCTGATACGGATCTAGCAATTGCAAAGCAACTAATGGAGGCAAAAGGAATTAAACAATTGCCTGTGGTCAAGCGTGGTGGAGAATTCAGAAGAGAAAGAAAGCGCAGAGTTATTGCTCTTCTGCATTATGATTCGGTAGAGGAGACGATCAGGTTTTGCAGCTTCTCTATGTAATATCTGATATTATGCTCGTCTGTTGCTCCGTTTTGCTCTGATCCAAGTTTAAACTGTTCCATATGTTTCTATGTGGTATGCAAGTCACAAGAGTAGGAAGTTCTTTTTTCTTTTGGGAGTAAAAAGAAAAGGTAAAAATGGATTTATGGTATGTGTTCTTTCATTAACTGTAGATCCTACTCTGTAGCTTTATTCAGAGGGAATTAAACTGCTAGACGTTTTGGAAATTGAGCAGAAATCTTTATCTTATGAGGGCCTGTAAATGAATGGAACTCGTAGAAGATGTGAACTTAAGTGATAGTTATAGGGTTCTTTTGATATTTGGCGCTAAACTACAGCTTGGTAAAATAGGTTTGAATGACAATACAGCTGTAGCTCGATTGAACACTCATATGGAGCTAAAAGCCCAAGAGGTGAAACTGATCTTAGTCTTTGCCTGAGTTTGGTCGTGTTAGCTTGCTTCTTATACCACCTGTCATTTGCAAAAGAACAATATTATCAAAGAAAGTAAATAAAAAGGGGAGAGAAGAACGTGTTAAAGACAGAAGTGACTCAATCAAGATTATGCAGGTGGAGCTGAACTTTACAAGAGTTTTTCGAATCCTTGTAAGATGATCAAAAACATAGTTCTAAAATGTAAATTGGCTCCCAGCACAGCCTTTGTGCTGATAACTAATAGACTACTCATTTGTGGATTTTGAATTGTTTAGACGTGCTTGGGTTTTGTGTTGTCAGTGTGTTTTCTGAATGTAATTCATCCTACAGGCGTGAAGTGAGTCACCGAAAGTCGGTCTACCAGCAGAATGAAGAAGAAAAAGATAAGCAGATCATAACGAATGGCCATTAATTGTTCAAGGTACTGTATATCACCAGCAAGTTTCAACAAGAAAATTTGTGTTTGTTCTACTTTGGCATCAATCTGAGTCTGGAAAGCAAGCTTCAACAAGAAATTACGATCTTAGTTGGTCATCAGTAGGTAATATCCAATTTACTGTATATTCTTGACTTAATTATGTGTGCAGAAGTTGAGGTTCCTTCCTGTTTGTTTCTGGAGCGAACATGCTGCACCAGGCTGCCAACAGAGCCAGAGAGCGTAATATCATGAGTTTTCCTCAAATAGTTTTAGTTGTACTTATCAGAAAGGCAGTTTTCGGTGTAAATTTGACATTTTGTACATGAAACATATGCTTGGTAGATCAAGGTAACACCAAAATGTGAAATCGTCATGGACTAATATATATACACAAATTGAGAGGTAACTAGCTG</genome_strand>
        <mrna_strand>GAGGGATATTTTGGGGATTAATCGCACTCTGTCCTCCACTTCCCGTCGTTAGTAGCTTAAAGTCGTAAAAAACTCGATTCCGGTAGCGACGGCGACAAGTTAACCTACTGAGAAGAAAGTTGTTAAATTTACACTCAATTTCGTAATGCATGCTGGTGGAATCGCCGGTTATCCTCCGACGAAAAGCCGGTGAAAAATTCCTCAGAAATGTCGGGAGGGGAGTACGGGGATCACAACATTTTGTTACGTTCTACTTCATCGGCGTCGGAAGGCGATGTGGAAAGCCAGTCATCGCCGAGGAGAACGAATACCAGAAGCATTAAGGATCTATTGAAGAGGTTAGATCGAGGATTTTCTGGTCGGCGATCATCGGATAGGGATCATCACCACTCCTCGTCGCCTTCGCCTTCTAATCGCCGCGGTGTTTCATCTACTGCGGATGAAATTCTAGGGGATAGTGCTCCGCCGGAATGGGCGATGTTGCTTGTTGGATGTCTCCTTGGCCTTGCTACTGGCCTTTGTGTTGCCGGGTTTAATCGAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGTAATACATGAGTGGGCATGGGCTGGTACTCCTTATGACGGTGCTGCTTGGCTTCGTTTGCAAAGGCTAGCTGATACTTGGCATCGGATACTTTTAATACCAGTTTTGGGTGGAGTCATTGTTGGCATGTTGCATGGTCTGCTCGGAATATTGGACCAAATAACACAGTCTAGCTCTACTCAGGGACAAGGATTTGATTTGATTGCTGGAATCTTCCCTACAGTGAAGGCCACTCAAGCTGCTATAACTCTGGGCACTGGTTGTTCCTTGGGTCCTGAAGGTCCTAGTGTAGATATAGGGAAATCATGTGCCTATGGATGCTCAATGATGATGGAAAACAACCGGGAAAGAAGAATAGCTCTTATTGCAGCTGGTGCAGCTGCTGGAATTTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGCAGCGGTAGCTGGCTCTTTCTTTGCAATTGAAACAGTTTTAAGACCACTCCGTGCTGAAAATTCACCCCCTTTTACAACTGCGATGATCATATTGGCTTCTGTTATATCATCAACTGTATCAAATGCAGTACTTGGGGAAAAACAGGCTTTCACAGTGCCCACGTATGATATGAAATCTGCTGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCCATTGTATTTGATACTGGGGATGCTGTGTGGAGTAGTAAGTGTTGTTTTCACTCGATTGGTGTCGTGGTTCACCAAGGGGTTTCAGTTCCTCAAGGAAAAGTTTGGACTTTCTGATGTTGTCTGCCCTGCTTTGGGGGGTTTAGGAGCTGGTGTAATAGCTCTGAGATATCCTGGAATTCTCTATTGGGGTTTCACTAATGTTGATGAAATCCTACATACTGGGAAAACTGCATCTGCACCTGGAATTGGATGGCTAGCTCAATTAGTTGCTGCAAAAGTCGTGGCCACTGCTTTGTGCAAAGGGTCTGGCCTTGTTGGTGGATTGTATGCACCAAGCTTAATGATAGGTGCTGCTGTAGGTGCTGTATTTGGAGGGTTAGCCGGGGAACTAATTAATTCAGCTATTCCAGGGAATGCTGCTATTGCCCAGCCGCACGCATATGCACTG.............................................................................................GTGGGGATGGCTGCTACACTAGCTTCAGTTTGCTCAGTGCCTTTGACGTCAGTGCTTTTATTGTTTGAGTTGACAAAAGATTATAGAATTTTGCTTCCTCTCATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGTTGGGCTGGCAATATGGGTGCCTTCCGTTACCGACCAGCCAAATGAAGCGGAGTCATCAGAAGCCAAGTTTGCATCAAAAGGTTACTCTATTCTTTCACCAACTGATGAAAATAATGAAGGGAATGGTTCGAGGCAATCTGGTGAGAGAAATAACTTGGAACTAATGGAGGTTCATAACAGTCATGAATCATTTGATGAAGGTCTCATTTTAGAAGATCTAAAG................................................................................................................................................................GTTTCTCAGGCCATGTCAAATGATTATTTAAAGGTCTCTCCAAGCCAAACTGTGAAAGAAGCATTAGAATGCATGCATGACGGCCGACAGAGTTGCGTTCTTGTGGTTGATGCTGAAGGTTACTTGGAAGGAATTTTAACATATGGTGACGTGAAAAGGAGTTTGTTTAAGAACCATGGGGATTCTTCCAACAAAGATTTATCAGTCACAGAT......................................................................................................................................................GCAAATACTTGTCTTGTGTCCTCTATATGCACAAAAGGGATAAGCTATCGTGGCCAAGATTGTGGACTCCTAACTTGTTATCCTGATACGGATCTAGCAATTGCAAAGCAACTAATGGAGGCAAAAGGAATTAAACAATTGCCTGTGGTCAAGCGTGGTGGAGAATTCAGAAGAGAAAGAAAGCGCAGAGTTATTGCTCTTCTGCATTATGATTCGGTAGAGGAGACGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAAGTGAGTCACCGAAAGTCGGTCTACCAGCAGAATGAAGAAGAAAAAGATAAGCAGATCATAACGAATGGCCATTAATTGTTCAAGGTACTGTATATCACCAGCAAGTTTCAACAAGAAAATTTGTGTTTGTTCTACTTTGGCATCAATCTGAGTCTGGAAAGCAAGCTTCAACAAGAAATTACGATCTTAGTTGGTCATCAGTAGGTAATATCCAATTTACTGTATATTCTTGACTTAATTATGTGTGCAGAAGTTGAGGTTCCTTCCTGTTTGTTTCTGGAGCGAACA---T-AACCAGGCTGCCAACAGAGCCGGAGAGCGTAATAGCATGAGTTTTCCTCAAATAGTTTTAGTTGTACTTATCAGAAAGGCAGTTTTCGGTGTAAATTTGACATTTTGTACATGAAACATATGCTTGCTAGATCAAGGTAACACCAAAATGTGAAATCGTCATGAACTAATATATATACACAAATTGAGAGGTAACTAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689372" ref_strand="+" ref_description="SGN-E689372 [t3_tus_84_G12]">
      <seq>catatgaaatctgctgccgagcttccattgtatttgatactggggatgctgtgtggagtagtaagtgttgttttcactcgattggtgtcgtggttcaccaaggggtttcagttcctcaaggaaaagtttggactttctgatgttgtctgccctgctttggggggtttaggagctggtgtaatagctctgagatatcctggaattctctattggggtttcactaatgttgatgaaatcctacatactgggaaaactgcatctgcacctggaattggatggctagctcaattagttgctgcaaaagtcgtggccactgctttgtgcaaagggtctggccttgttggtggattgtatgcaccaagcttaatgataggtgctgctgtaggtgctgtatttggagggttagccggggaactaattaattcagctattccagggaatgctgctattgcccagccgcaggcatatgcactggtggggatggctgctacactagcttcagtttgctcagtgcctttgacgtcagtgcttttattgtttgagttgacaaaagattatagaattttgcttcctctcatgggtgctgttgggctggcaatatgggtgccttccgttaccgaccagccaaatgaagcggagtcatcagaagccaagtttgcatcaaaaggttactctattctttcaccaactgatgaaaataatgaagggaatggttcgaggcaatctggtgagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="47726" stop="44356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47421" g_stop="46967" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="474" r_length="455" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46966" i_stop="46874" i_length="93">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46873" g_stop="46769" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="579" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46768" i_stop="44812" i_length="1957">
            <donor d_prob="0.746" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44811" g_stop="44656" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="735" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E689372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47421" e_stop="46967"/>
          <exon e_start="46873" e_stop="46769"/>
          <exon e_start="44811" e_stop="44656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCCATTGTATTTGATACTGGGGATGCTGTGTGGAGTAGTAAGTGTTGTTTTCACTCGATTGGTGTCGTGGTTCACCAAGGGGTTTCAGTTCCTCAAGGAAAAGTTTGGACTTTCTGATGTTGTCTGCCCTGCTTTGGGGGGTTTAGGAGCTGGTGTAATAGCTCTGAGATATCCTGGAATTCTCTATTGGGGTTTCACTAATGTTGATGAAATCCTACATACTGGGAAAACTGCATCTGCACCTGGAATTGGATGGCTAGCTCAATTAGTTGCTGCAAAAGTCGTGGCCACTGCTTTGTGCAAAGGGTCTGGCCTTGTTGGTGGATTGTATGCACCAAGCTTAATGATAGGTGCTGCTGTAGGTGCTGTATTTGGAGGGTTAGCCGGGGAACTAATTAATTCAGCTATTCCAGGGAATGCTGCTATTGCCCAGCCGCAGGCATATGCACTGGTCTGATATACTTTTACCTTCCCCAAACAATTATTACACTCCAATGCCGTTTAGGTGGTAAACTTTTTTAATGGATAAGTGTAAACAATGCAGGTGGGGATGGCTGCTACACTAGCTTCAGTTTGCTCAGTGCCTTTGACGTCAGTGCTTTTATTGTTTGAGTTGACAAAAGATTATAGAATTTTGCTTCCTCTCATGGTTAGTCTTGCTGAACAAAAACTCACTAGTTCTAGTTGTTTTTCATGTGTGTTACTAAAAGCTCCCATGCTTGATATAAACACCTATCTTTGTTATCTAATTTCCAAGTTTCTGAGTAACTCAAGTCCGTAACATAGTATCTCTTACTTTCTGAGTAACTCAAGTCTTCTTTGTGAAAAATTGTTGTCATCCTAGGTTAACTTCATAATTTGAGTATGCAATGGACTTCCTTTAATTGTATTGGCTAATTTTTGAGTTACTCACATTCTGAGATCAAGGTTTCCCCGCTTTGCTACATTCTGGTGTTTCTTTACCAGTTTATCTTAGGTAATCATTAAGTATATTCCTGACTTTTACTGTGGCGGTACTGCGGTTCGCATGTATTGATCTTTAACTTAATTTTGAGCTGTGTTTGACCTCCAAAATTTGGATTAAGTGGATCTTTTGGCTACTATCTGAACATTCTCCGGGGAATTCTGTGCTGAAATCACCCTGAGGGAGAGTTTGTGTAGTCAGGTGGTAAATTTGATCTTGGTAACCTTTTTGGTTGGTTAATTTAATCTCTGTAACTTTTCGCCATAAGTTTATGCTAACACGTTGGACTATTGTCCTCTCTACATTTGAGAGGTAAGAGGGCTAAACTATAGGAAACTATGCTGCCATAATAAGGAAACCTTCTATTATATTAAAGGCTTAAGTCATCTGCGGCCCCTTAAAGTTATCCGCATATTTCATTTGGACACCTTATCTTAGGTTTGTTCCAATTGAACACCTTTATTAGTTAAAAAAAATACCTATCGAACATTTTTTGAAAATAAACAAAAAGTAGAGATTGTGTGTAATACAATCGCCACTAACGTGGCATAATATCTAATGAAAAATTGACACGCGGCATTGGGCCATAATAACAATTAGTAAAAATAAATTAGGAAATACTTAAAAGCTATGTGTTCAGAAAAAAGAAAAAAAAAGGCTTTCTTTTTCCCTTTTCTTCTTTGCAGATGCCCAGAACAACCACCCACCCCCGACGTCCATTTTTCTCCATTATTTTTCTCAATACACACACAATTGTTGGTCAAAATTACGTGCACTCCGATAATCATCCTCACTCCACCTTATGAATCTTTAACGATTTCAAAGAAAATAATTTCATATTCGTAATAGTTTTGTCGGAAAAAATGGAATTTCGCCGGAATTATTTTAAGCTCAATTTGATTTTTGTTTTTGATGAAATTCTCTTCCACAACTTAAATGAATATCTTTATCAACAAACTCTTTTAGTTTATTGTGTTTTGACTGGTTATATATTTAATTGATGTTTCTCTGATGACGACAACAACAACGATAATATTGATGATGACGGAATGATGCTATTTGAGAAAGGGGTGTGTCGATGGTGGGAAAGGAATGGTGGACGAGGGTTCTAGGTAATACTATTGAATTGAAAAGTCCCACCGGGAAAGATGAATTGGGGAAGAACTGCCAGCAATTTTTTCTTAAAAAATTCTGTTCATATTATGATTTTTCTCTTGTTGACATGTTCATTCTTTATTGGTCCAAAAAAAGATTTTTTTGGCTTCAAGCGCCTCTTAAATGTGTATTACACTTACAATGCCATGTCATGAAAAAGTATTAAATAAGTACATGTATTAAAGGGTAGAGGTGTTCACTAGGTACAACCCCTAGTTGAGGTGTCTAAGTGAATTATGCAAACAAATTCAAGGGTCCGCAGATGACTTAAGCCTATATTAAATTACATTACAGACATAACGTTACATTATAGTGTACTATATTAAGACTTATCCTTATCGGACTTGTACAAATCTAACTTGCATCTGTGTTTGCTAGTTAGATAATCGCATAGATGTATTTTGCTATTGTAGGTTGCTGTTGAAATGATAAATGGTGTAAAACTTGCAGTTTAAGTCATGCAATTGTTTTAAATGTTCTTTAATAGGGTGCTGTTGGGCTGGCAATATGGGTGCCTTCCGTTACCGACCAGCCAAATGAAGCGGAGTCATCAGAAGCCAAGTTTGCATCAAAAGGTTACTCTATTCTTTCACCAACTGATGAAAATAATGAAGGGAATGGTTCGAGGCAATCTGGTGAGAGA</genome_strand>
        <mrna_strand>AGCTTCCATTGTATTTGATACTGGGGATGCTGTGTGGAGTAGTAAGTGTTGTTTTCACTCGATTGGTGTCGTGGTTCACCAAGGGGTTTCAGTTCCTCAAGGAAAAGTTTGGACTTTCTGATGTTGTCTGCCCTGCTTTGGGGGGTTTAGGAGCTGGTGTAATAGCTCTGAGATATCCTGGAATTCTCTATTGGGGTTTCACTAATGTTGATGAAATCCTACATACTGGGAAAACTGCATCTGCACCTGGAATTGGATGGCTAGCTCAATTAGTTGCTGCAAAAGTCGTGGCCACTGCTTTGTGCAAAGGGTCTGGCCTTGTTGGTGGATTGTATGCACCAAGCTTAATGATAGGTGCTGCTGTAGGTGCTGTATTTGGAGGGTTAGCCGGGGAACTAATTAATTCAGCTATTCCAGGGAATGCTGCTATTGCCCAGCCGCAGGCATATGCACTG.............................................................................................GTGGGGATGGCTGCTACACTAGCTTCAGTTTGCTCAGTGCCTTTGACGTCAGTGCTTTTATTGTTTGAGTTGACAAAAGATTATAGAATTTTGCTTCCTCTCATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGTTGGGCTGGCAATATGGGTGCCTTCCGTTACCGACCAGCCAAATGAAGCGGAGTCATCAGAAGCCAAGTTTGCATCAAAAGGTTACTCTATTCTTTCACCAACTGATGAAAATAATGAAGGGAATGGTTCGAGGCAATCTGGTGAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333174" ref_strand="+" ref_description="SGN-E333174 [cTOD-19-N20]">
      <seq>tgaaatctgctgccgagcttccattgtatttgatactggggatgctgtgtggagtagtaagtgttgttttcactcgattggtgtcgtggttcaccaaggggtttcagttcctcaaggaaaagtttggactttctgatgttgtctgccctgctttggggggtttaggagctggtgtaatagctctgagatatcctggaattctctattggggtttcactaatgttgatgaaatcctacatactgggaaaactgcatctgcacctggaattggatggctagctcaattagttgctgcaaaagtcgtggccactgctttgtgcaaagggtctggccttgttggtggattgtatgcaccaagcttaatgataggtgctgctgtaggtgctgtatttggagggttagccggggaactaattaattcagctattccagggaatgctgctattgcccagccgcaggcatatgcactggtggggatggctgctacactagcttcagtttgctcagtgcctttgacgtcagtgcttttattgtttgagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="47726" stop="46502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47421" g_stop="46967" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="470" r_length="455" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46966" i_stop="46874" i_length="93">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46873" g_stop="46802" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="542" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E333174" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47421" e_stop="46967"/>
          <exon e_start="46873" e_stop="46802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCCATTGTATTTGATACTGGGGATGCTGTGTGGAGTAGTAAGTGTTGTTTTCACTCGATTGGTGTCGTGGTTCACCAAGGGGTTTCAGTTCCTCAAGGAAAAGTTTGGACTTTCTGATGTTGTCTGCCCTGCTTTGGGGGGTTTAGGAGCTGGTGTAATAGCTCTGAGATATCCTGGAATTCTCTATTGGGGTTTCACTAATGTTGATGAAATCCTACATACTGGGAAAACTGCATCTGCACCTGGAATTGGATGGCTAGCTCAATTAGTTGCTGCAAAAGTCGTGGCCACTGCTTTGTGCAAAGGGTCTGGCCTTGTTGGTGGATTGTATGCACCAAGCTTAATGATAGGTGCTGCTGTAGGTGCTGTATTTGGAGGGTTAGCCGGGGAACTAATTAATTCAGCTATTCCAGGGAATGCTGCTATTGCCCAGCCGCAGGCATATGCACTGGTCTGATATACTTTTACCTTCCCCAAACAATTATTACACTCCAATGCCGTTTAGGTGGTAAACTTTTTTAATGGATAAGTGTAAACAATGCAGGTGGGGATGGCTGCTACACTAGCTTCAGTTTGCTCAGTGCCTTTGACGTCAGTGCTTTTATTGTTTGAGTTG</genome_strand>
        <mrna_strand>AGCTTCCATTGTATTTGATACTGGGGATGCTGTGTGGAGTAGTAAGTGTTGTTTTCACTCGATTGGTGTCGTGGTTCACCAAGGGGTTTCAGTTCCTCAAGGAAAAGTTTGGACTTTCTGATGTTGTCTGCCCTGCTTTGGGGGGTTTAGGAGCTGGTGTAATAGCTCTGAGATATCCTGGAATTCTCTATTGGGGTTTCACTAATGTTGATGAAATCCTACATACTGGGAAAACTGCATCTGCACCTGGAATTGGATGGCTAGCTCAATTAGTTGCTGCAAAAGTCGTGGCCACTGCTTTGTGCAAAGGGTCTGGCCTTGTTGGTGGATTGTATGCACCAAGCTTAATGATAGGTGCTGCTGTAGGTGCTGTATTTGGAGGGTTAGCCGGGGAACTAATTAATTCAGCTATTCCAGGGAATGCTGCTATTGCCCAGCCGCAGGCATATGCACTG.............................................................................................GTGGGGATGGCTGCTACACTAGCTTCAGTTTGCTCAGTGCCTTTGACGTCAGTGCTTTTATTGTTTGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332926" ref_strand="+" ref_description="SGN-E332926 [cTOD-19-O2]">
      <seq>tgaaatctgctgccgagcttccattgtatttgatactggggatgctgtgtggagtagtaagtgttgttttcactcgattggtgtcgtggttcaccaaggggtttcagttcctcaaggaaaagtttggactttctgatgttgtctgccctgctttggggggtttaggagctggtgtaatagctctgagatatcctggaattctctattggggtttcactaatgttgatgaaatcctacatactgggaaaactgcatctgcacctggaattggatggctagctcaattagttgctgcaaaagtcgtggccactgctttgtgcaaagggtctggccttgttggtggattgtatgcaccaagcttaatgataagtgctgctgtaagtgctgtatttggagggttagccggggaactaattaattcagctattccacggaatgctgctattgcccagccgcaagcatatgcactggtggggatggctgctacactaacttcagtttgctcagtgcctttgacgtcagtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="47726" stop="46516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47421" g_stop="46967" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="470" r_length="455" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46966" i_stop="46874" i_length="93">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46873" g_stop="46816" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="528" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E332926" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47421" e_stop="46967"/>
          <exon e_start="46873" e_stop="46816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCCATTGTATTTGATACTGGGGATGCTGTGTGGAGTAGTAAGTGTTGTTTTCACTCGATTGGTGTCGTGGTTCACCAAGGGGTTTCAGTTCCTCAAGGAAAAGTTTGGACTTTCTGATGTTGTCTGCCCTGCTTTGGGGGGTTTAGGAGCTGGTGTAATAGCTCTGAGATATCCTGGAATTCTCTATTGGGGTTTCACTAATGTTGATGAAATCCTACATACTGGGAAAACTGCATCTGCACCTGGAATTGGATGGCTAGCTCAATTAGTTGCTGCAAAAGTCGTGGCCACTGCTTTGTGCAAAGGGTCTGGCCTTGTTGGTGGATTGTATGCACCAAGCTTAATGATAGGTGCTGCTGTAGGTGCTGTATTTGGAGGGTTAGCCGGGGAACTAATTAATTCAGCTATTCCAGGGAATGCTGCTATTGCCCAGCCGCAGGCATATGCACTGGTCTGATATACTTTTACCTTCCCCAAACAATTATTACACTCCAATGCCGTTTAGGTGGTAAACTTTTTTAATGGATAAGTGTAAACAATGCAGGTGGGGATGGCTGCTACACTAGCTTCAGTTTGCTCAGTGCCTTTGACGTCAGTGCTTT</genome_strand>
        <mrna_strand>AGCTTCCATTGTATTTGATACTGGGGATGCTGTGTGGAGTAGTAAGTGTTGTTTTCACTCGATTGGTGTCGTGGTTCACCAAGGGGTTTCAGTTCCTCAAGGAAAAGTTTGGACTTTCTGATGTTGTCTGCCCTGCTTTGGGGGGTTTAGGAGCTGGTGTAATAGCTCTGAGATATCCTGGAATTCTCTATTGGGGTTTCACTAATGTTGATGAAATCCTACATACTGGGAAAACTGCATCTGCACCTGGAATTGGATGGCTAGCTCAATTAGTTGCTGCAAAAGTCGTGGCCACTGCTTTGTGCAAAGGGTCTGGCCTTGTTGGTGGATTGTATGCACCAAGCTTAATGATAAGTGCTGCTGTAAGTGCTGTATTTGGAGGGTTAGCCGGGGAACTAATTAATTCAGCTATTCCACGGAATGCTGCTATTGCCCAGCCGCAAGCATATGCACTG.............................................................................................GTGGGGATGGCTGCTACACTAACTTCAGTTTGCTCAGTGCCTTTGACGTCAGTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735978" ref_strand="+" ref_description="SGN-E735978 [LC03DF07]">
      <seq>cgatagagagaaacatcacaaccttctgaagtctgcttctcatactataaagttttgcttgtccaagccagatcgctgtcccaagattaggagtggtcaagagagcaccttttgtccaagagaaaatgttgaccaaatggattgcctaaataaggacctcagatctgcggaccaaatgctatcaaatggattggccaccataaaacaatgggcatgttcaaagagaactggcctcacaaggaagatcactgataaggacgatcatcacctttctggcgctgatatgtcgactggcgtgcagagtgacaatgatgtgttgcctcacacttatccatttaaaaagagaagcgggcttgtgaaatctccaagatcatctgtttgtttgcctgagagtagcccaagaatggggaatatgctacttgatcatcctcaagaagaacgtagcgaggaaccaccttctctacacgagaaagtggtggacttttcatcatctcaatcttctctcccatctagcaagaagagatccctactgttactcaggcgcaaaggaaaacatttgaaggtagatggccattctgtgatcaatcatccgagtatgactacaggccgtgcactttctgtgaaaaatgtgagagttggaataaacacatataactactctgaggtctactgtgaacagtccactgctcatccatcattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="60885" stop="62573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61183" g_stop="61267" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61268" i_stop="61656" i_length="389">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61657" g_stop="62273" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="702" r_length="617" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E735978" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61183" e_stop="61267"/>
          <exon e_start="61657" e_stop="62273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAAAGAAACATCACAACCTTCTGAAATCTGCTTCTCATACTAAAAAGTTTTGCTTGTCCAAGCCAGATCACTGTCCCAAGGTATGTTTTTAAAATCCTGGACATAAAGAAGTTCCCTCAGGTTTTGTTTTGTTCTTGAAACCCATCTTTTATCTAGTACATCTCATCTTCGAAAATTTCATTGCTTCCGAAACTGTAGCACTATAGTGCAGTAATGCTACTGCAAAATTTTAGGAGCGGAAAACAAAAGAATATTGGGAGAGCAATGTTAAACATCTCTTTCTGCACTTTGCCCTTCATGTTCGCTTAATTTCATGATTGTTTTGGTAAATTTGGTGGAAAGGAGGGGCGGGTGCAGGTGGGGTTTCATTTATCTTTTATCAAAAATATTTTGTTTGTACCAATTAGCAATCCTAGTATGTAATATATTAATTTGCTTTGAACTAAGTTGCTAAATATTTTATGAACAGATTAAGAGTGGTCAAGAGAGCACCTTTTGTCCAAGAGAAAATGTTGACAAAATGGATTGCCTAAATAAGGACCTCAGATCTGCGGACCAGATGCTATCAAATGGATTGGCAACCATAAAACAATGGGCATGTTCAAAGAGAACTGGCCTCACAAGGAAGATCAGTGATAAGGACAATCATCAGCTTTCTGGCGCTGATATGTCGACTGGCGTGCAAAGTGACAATGATGTGTTGCCTCAGACTTATCCATTTAAAAAGAGAAGCGGTCTTGTGAAATCTCCAAGATCATCTGTTTGTTTGCCTGAGAGTAGCCAAAGAATGGGGAATATGCTACTTGATCAGCCTCAAGAAGAACGTAGCGAGGAACCACCTTCTCTACACAAGAAAGTGGTGGACTTTTCATCATCTCAATCTTCACTCCCATCTAACAAGAAGAGATCCCTAGTGTTACAAAGGTGCAAAGGAAAACATTTGAAGGTAGATGGCCATTCTGTGAACAATCATCCGAAAATGACTACAGGCCATGCACTTTCTGTGAAAAATGTGAGAGTTGGAAGAAACACAGATAACTACTCTGAGGTCAACTGTGAACAGTCCACCGCTCATCCATCATTCTC</genome_strand>
        <mrna_strand>CGATAGAGAGAAACATCACAACCTTCTGAAGTCTGCTTCTCATACTATAAAGTTTTGCTTGTCCAAGCCAGATCGCTGTCCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................ATTAGGAGTGGTCAAGAGAGCACCTTTTGTCCAAGAGAAAATGTTGACCAAATGGATTGCCTAAATAAGGACCTCAGATCTGCGGACCAAATGCTATCAAATGGATTGGCCACCATAAAACAATGGGCATGTTCAAAGAGAACTGGCCTCACAAGGAAGATCACTGATAAGGACGATCATCACCTTTCTGGCGCTGATATGTCGACTGGCGTGCAGAGTGACAATGATGTGTTGCCTCACACTTATCCATTTAAAAAGAGAAGCGGGCTTGTGAAATCTCCAAGATCATCTGTTTGTTTGCCTGAGAGTAGCCCAAGAATGGGGAATATGCTACTTGATCATCCTCAAGAAGAACGTAGCGAGGAACCACCTTCTCTACACGAGAAAGTGGTGGACTTTTCATCATCTCAATCTTCTCTCCCATCTAGCAAGAAGAGATCCCTACTGTTACTCAGGCGCAAAGGAAAACATTTGAAGGTAGATGGCCATTCTGTGATCAATCATCCGAGTATGACTACAGGCCGTGCACTTTCTGTGAAAAATGTGAGAGTTGGAATAAACACATATAACTACTCTGAGGTCTACTGTGAACAGTCCACTGCTCATCCATCATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314835" ref_strand="+" ref_description="SGN-E314835 [cTOA-20-F18]">
      <seq>ccagatcactgtcccaagattaagagtggtcaagagagcaccttttgtccaagagaaaatgttgacaaaatggattgcctaaataaggacctcagatctgcggaccagatgctatcaaatggattggcaaccataaaacaatgggcatgttcaaagagaactggcctcacaaggaagatcagtgataaggacaatcatcagctttctggcgctgatatgtcgactggcgtgcaaagtgacaatgatgtgttgcctcagacttatccatttaaaaagagaagcggtcttgtgaaatctccaagatcatctgtttgtttgcctgagagtagccaaagaatggggaatatgctacttgatcagcctcaagaagaacgtagcgaggaaccaccttctctacacaagaaagtggtggacttttcatcatctcaatcttcactcccatctaacaagaagagatccctagtgttacaaaggtgcaaaggaaaacatttgaaggtagatggccattctgtgaacaatcatccgaaaatgactacaggccatgcactttctgtgaaaaatgtgagagttggaagaaacacagataactactctgaggtcaactgtgaacagtccaccgctcatccatcattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="60950" stop="62573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61250" g_stop="61267" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61268" i_stop="61656" i_length="389">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61657" g_stop="62273" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="635" r_length="617" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E314835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61250" e_stop="61267"/>
          <exon e_start="61657" e_stop="62273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATCACTGTCCCAAGGTATGTTTTTAAAATCCTGGACATAAAGAAGTTCCCTCAGGTTTTGTTTTGTTCTTGAAACCCATCTTTTATCTAGTACATCTCATCTTCGAAAATTTCATTGCTTCCGAAACTGTAGCACTATAGTGCAGTAATGCTACTGCAAAATTTTAGGAGCGGAAAACAAAAGAATATTGGGAGAGCAATGTTAAACATCTCTTTCTGCACTTTGCCCTTCATGTTCGCTTAATTTCATGATTGTTTTGGTAAATTTGGTGGAAAGGAGGGGCGGGTGCAGGTGGGGTTTCATTTATCTTTTATCAAAAATATTTTGTTTGTACCAATTAGCAATCCTAGTATGTAATATATTAATTTGCTTTGAACTAAGTTGCTAAATATTTTATGAACAGATTAAGAGTGGTCAAGAGAGCACCTTTTGTCCAAGAGAAAATGTTGACAAAATGGATTGCCTAAATAAGGACCTCAGATCTGCGGACCAGATGCTATCAAATGGATTGGCAACCATAAAACAATGGGCATGTTCAAAGAGAACTGGCCTCACAAGGAAGATCAGTGATAAGGACAATCATCAGCTTTCTGGCGCTGATATGTCGACTGGCGTGCAAAGTGACAATGATGTGTTGCCTCAGACTTATCCATTTAAAAAGAGAAGCGGTCTTGTGAAATCTCCAAGATCATCTGTTTGTTTGCCTGAGAGTAGCCAAAGAATGGGGAATATGCTACTTGATCAGCCTCAAGAAGAACGTAGCGAGGAACCACCTTCTCTACACAAGAAAGTGGTGGACTTTTCATCATCTCAATCTTCACTCCCATCTAACAAGAAGAGATCCCTAGTGTTACAAAGGTGCAAAGGAAAACATTTGAAGGTAGATGGCCATTCTGTGAACAATCATCCGAAAATGACTACAGGCCATGCACTTTCTGTGAAAAATGTGAGAGTTGGAAGAAACACAGATAACTACTCTGAGGTCAACTGTGAACAGTCCACCGCTCATCCATCATTCTC</genome_strand>
        <mrna_strand>CCAGATCACTGTCCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAGTGGTCAAGAGAGCACCTTTTGTCCAAGAGAAAATGTTGACAAAATGGATTGCCTAAATAAGGACCTCAGATCTGCGGACCAGATGCTATCAAATGGATTGGCAACCATAAAACAATGGGCATGTTCAAAGAGAACTGGCCTCACAAGGAAGATCAGTGATAAGGACAATCATCAGCTTTCTGGCGCTGATATGTCGACTGGCGTGCAAAGTGACAATGATGTGTTGCCTCAGACTTATCCATTTAAAAAGAGAAGCGGTCTTGTGAAATCTCCAAGATCATCTGTTTGTTTGCCTGAGAGTAGCCAAAGAATGGGGAATATGCTACTTGATCAGCCTCAAGAAGAACGTAGCGAGGAACCACCTTCTCTACACAAGAAAGTGGTGGACTTTTCATCATCTCAATCTTCACTCCCATCTAACAAGAAGAGATCCCTAGTGTTACAAAGGTGCAAAGGAAAACATTTGAAGGTAGATGGCCATTCTGTGAACAATCATCCGAAAATGACTACAGGCCATGCACTTTCTGTGAAAAATGTGAGAGTTGGAAGAAACACAGATAACTACTCTGAGGTCAACTGTGAACAGTCCACCGCTCATCCATCATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345276" ref_strand="+" ref_description="SGN-E345276 [cTOF-13-N15]">
      <seq>acaagtacagccatcccctacatctccagcctcgtttttgtgtaagagcagtggcagtggattgatgggtgccccctttggcagacaagactatttaggtaggggcaacttacatactgtgcgaaatggaccaaacgagacatgtgatatgaagaagtttgtagcaactcccatctctcattggcagaatgcaacttcagttgggccaaatgctgtcagagaaattattgtaattgatgattctccagaaaacgaggctaattctccatacaccatgaactcagggaaaatgcagattagctcaggctatacctcaaggtttgtggatctctgtgaaaatagaccgcgtggtgaaactggagcagctcagaatgcaaatttgcttactcaagtgaatgagcttcctgctaagacatggaatgtcaacccagacggttgtagtttagttcatccgagctctttctcagcttcctcatcacctgcaggtccttttagatcatctttatattattctccaggtttttcataaccaagaaatcgtcttttacatcttgactgacaaaagaaaacgcggcaaagttgagcagatgagtttttctagtttgggttttcgctttcatagcgtttgatgtttactcaaaacagtactgaaagttccatagatatatataatatatataaagcagtttaattactgaagccagttgaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="63726" stop="65037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64026" g_stop="64737" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E345276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64026" e_stop="64737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTACAGCCATCCCCTACATCTCCAGCCTCGTTTTTGTGTAAGAGCAGTGGCAGTGGATTGATGGGTGCCCCCTTTGGCAGACAAGACTATTTAGGTAGGGGCAACTTACATACTGTGCGAAATGGACCAAACGAGACATGTGATATGAAGAAGTTTGTAGCAACTCCCATCTCTCATTGGCAGAATGCAACTTCAGTTGGGCCAAATGCTGTCAGAGAAATTATTGTAATTGATGATTCTCCAGAAAACGAGGCTAATTCTCCATACACCATGAACTCAGGGAAAATGCAGATTAGCTCAGGCTATACCTCAAGGTTTGTGGATCTCTGTGAAAATAGACCGCGTGGTGAAACTGGAGCAGCTCAGAATGCAAATTTGCTTACTCAAGTGAATGAGCTTCCTGCTAAGACATGGAATGTCAACCCAGACGGTTGTAGTTTAGTTCATCCGAGCTCTTTCTCAGCTTCCTCATCACCTGCAGGTCCTTTTAGATCATCTTTATATTATTCTCCAGGTTTTTCATAACCAAGAAATCGTCTTTTACATCTTGACTGACAAAAGAAAACGCGGCAAAGTTGAGCAGATGAGTTTTTCTAGTTTGGGTTTTCGCTTTCATAGCGTTTGATGTTTACTCAAAACAGTACTGAAAGTTCCATAGATATATATAATATATATAAAGCAGTTTAATTACTGAAGCCAGTTGAAAGT</genome_strand>
        <mrna_strand>ACAAGTACAGCCATCCCCTACATCTCCAGCCTCGTTTTTGTGTAAGAGCAGTGGCAGTGGATTGATGGGTGCCCCCTTTGGCAGACAAGACTATTTAGGTAGGGGCAACTTACATACTGTGCGAAATGGACCAAACGAGACATGTGATATGAAGAAGTTTGTAGCAACTCCCATCTCTCATTGGCAGAATGCAACTTCAGTTGGGCCAAATGCTGTCAGAGAAATTATTGTAATTGATGATTCTCCAGAAAACGAGGCTAATTCTCCATACACCATGAACTCAGGGAAAATGCAGATTAGCTCAGGCTATACCTCAAGGTTTGTGGATCTCTGTGAAAATAGACCGCGTGGTGAAACTGGAGCAGCTCAGAATGCAAATTTGCTTACTCAAGTGAATGAGCTTCCTGCTAAGACATGGAATGTCAACCCAGACGGTTGTAGTTTAGTTCATCCGAGCTCTTTCTCAGCTTCCTCATCACCTGCAGGTCCTTTTAGATCATCTTTATATTATTCTCCAGGTTTTTCATAACCAAGAAATCGTCTTTTACATCTTGACTGACAAAAGAAAACGCGGCAAAGTTGAGCAGATGAGTTTTTCTAGTTTGGGTTTTCGCTTTCATAGCGTTTGATGTTTACTCAAAACAGTACTGAAAGTTCCATAGATATATATAATATATATAAAGCAGTTTAATTACTGAAGCCAGTTGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349270" ref_strand="+" ref_description="SGN-E349270 [cTOS-2-D10]">
      <seq>actgtgcgaaatggaccaaacgagacatgtgatatgaagaagtttgtagcaactcccatctctcattggcagaatgcaacttcagttgggccaaatgctgtcagagaaattattgtaattgatgattctccagaaaacgaggctaattctccatacaccatgaactcagggaaaatgcagattagctcaggctatacctcaaggtttgtggatctctgtgaaaatagaccgcgtggtgaaactggagcagctcagaatgcaaatttgcttactcaagtgaatgagcttcctgctaagacatggaatgtcaacccagacggttgtagtttagttcatccgagctctttctcagcttcctcatcacctgcaggtccttttagatcatctttatattattctccaggtttttcataaccaagaaatcgtcttttacatcttgactgacaaaagaaaacgcggcaaagttgagcagatgagtttttctagtttgggttttcgctttcatagcgtttgatgtttactcaaaacagtactgaaagttccatagatatatataatatatataaagcagtttaattactgaagccagttgaaagttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="63841" stop="65038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64141" g_stop="64735" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="614"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E349270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64141" e_stop="64735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTGCGAAATGGACCAAACGAGACATGTGATATGAAGAAGTTTGTAGCAACTCCCATCTCTCATTGGCAGAATGCAACTTCAGTTGGGCCAAATGCTGTCAGAGAAATTATTGTAATTGATGATTCTCCAGAAAACGAGGCTAATTCTCCATACACCATGAACTCAGGGAAAATGCAGATTAGCTCAGGCTATACCTCAAGGTTTGTGGATCTCTGTGAAAATAGACCGCGTGGTGAAACTGGAGCAGCTCAGAATGCAAATTTGCTTACTCAAGTGAATGAGCTTCCTGCTAAGACATGGAATGTCAACCCAGACGGTTGTAGTTTAGTTCATCCGAGCTCTTTCTCAGCTTCCTCATCACCTGCAGGTCCTTTTAGATCATCTTTATATTATTCTCCAGGTTTTTCATAACCAAGAAATCGTCTTTTACATCTTGACTGACAAAAGAAAACGCGGCAAAGTTGAGCAGATGAGTTTTTCTAGTTTGGGTTTTCGCTTTCATAGCGTTTGATGTTTACTCAAAACAGTACTGAAAGTTCCATAGATATATATAATATATATAAAGCAGTTTAATTACTGAAGCCAGTTGAAA</genome_strand>
        <mrna_strand>ACTGTGCGAAATGGACCAAACGAGACATGTGATATGAAGAAGTTTGTAGCAACTCCCATCTCTCATTGGCAGAATGCAACTTCAGTTGGGCCAAATGCTGTCAGAGAAATTATTGTAATTGATGATTCTCCAGAAAACGAGGCTAATTCTCCATACACCATGAACTCAGGGAAAATGCAGATTAGCTCAGGCTATACCTCAAGGTTTGTGGATCTCTGTGAAAATAGACCGCGTGGTGAAACTGGAGCAGCTCAGAATGCAAATTTGCTTACTCAAGTGAATGAGCTTCCTGCTAAGACATGGAATGTCAACCCAGACGGTTGTAGTTTAGTTCATCCGAGCTCTTTCTCAGCTTCCTCATCACCTGCAGGTCCTTTTAGATCATCTTTATATTATTCTCCAGGTTTTTCATAACCAAGAAATCGTCTTTTACATCTTGACTGACAAAAGAAAACGCGGCAAAGTTGAGCAGATGAGTTTTTCTAGTTTGGGTTTTCGCTTTCATAGCGTTTGATGTTTACTCAAAACAGTACTGAAAGTTCCATAGATATATATAATATATATAAAGCAGTTTAATTACTGAAGCCAGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719453" ref_strand="+" ref_description="SGN-E719453 [FC07DF11]">
      <seq>gggagataatatacaaattggctagaaacaataaagatagttgcaacagttcaggcggctattaatttcccaaatttgttcccaattctagggtttccataatctcaattctcttcgaatttctcttggaaatccagcagaataatgaatgaaaagggtgactttgctacaagtaatggtacaaaaggtgaaaggtcaatgaactatgatgaagaatccagtgatgaagctcaggacagagaaaggccaattggtgaggaacttggggctggtctcgagagagggaatgatagggagtctgaaaatgtgtcaaaagaagatctagctgctgaatctccgtgggatgttaatgaagagaagagtgagaatcacggttcatccactgatcacgagcctctaacggaatctatcttcaacttccatgctgctcaagaagctcttgctagtgaaattcataaattcgaagaaatagggaaagatactaactttggtcattcacttgaggatgttggtagaccttcaaatttctcgtcagatgactcaaattttcctacatcaagcacatccttgctgtcacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="76996" stop="80859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77295" g_stop="77450" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77451" i_stop="78492" i_length="1042">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78493" g_stop="78784" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="448" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78785" i_stop="80426" i_length="1642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80427" g_stop="80559" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="581" r_length="133" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E719453" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77295" e_stop="77450"/>
          <exon e_start="78493" e_stop="78784"/>
          <exon e_start="80427" e_stop="80559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGATAATATACAAATTGGCTAGAAACAATAAAGATAGTTGCAACAGTTCAGGCGGCTATTAATTTCCCAAATTTGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTCTCTTGGAAATCCAGCAGAATAATGAATGAAAAGGTACGCCCAGTTACTTAATTGCTTCTCCATTTCCTAATTTTTTGCATCTGCAGTACAAGTTTTTACAATGAACGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGTAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCTGGTGAAATCCTCTCCAATAACTAAGGGGTTTGGGTTGAAAAAATGGAAAAGGATGAAGCGGGATGCGCAGCGCCAGGATGGGGATAGTAGTGTTAACAGCGGTAAGCTGTTGAAACGGGGTTTGGCGAGTGAGTTTGCTAATGCAGAAAAACCTGCAACTTTTGCTGTGGGAAGGATCCAAAAAAGTGATGGATCTGTTTCATCAACGAATGCAGTATTCATGAATCCTGGAGTTCTGAGTGATGGATTTGGTGTAATAGGTGACTCTGGTTTGGCTATGGGGCCTAATTTTATTGCTGTATCGGAATCAGAGAACAGCGAGGATCGGAGTAGTAGGTCTTCTACTGCAGCTAGTGCTCCAAAGGCAAGGTATGAAGCACCTGTGCACCTTGGTTATCCATCTGACAAGCATTGGTTGAGGAGTTTGAGTGGGAAGAGCTTGAGCACATCAGCTCAGAAACCACATCAGAGAAAAGGTCGGGCTGAAACTTGTAAAAAGCCTAGAGGAGAAAGGGTCAAAATCGAGAAGGAAAACTCTCATTCCAGCATGGAATCTGACTCGCGAAGCTCTAATTTCCTCTTTATGCAGGGTGACTTTGCTACAAGTAATGGTACAAAAGGTGAAAGGTCAATGAACTATGATGAAGAATCCAGTGATGAAGCTCAGGACAGAGAAAGGCCAATTGGTGAGGAACTTGGGGCTGGTCTCGAGAGAGGGAATGATAGGGAGTCTGAAAATGTGTCAAAAGAAGATCTAGCTGCTGAATCTCCGTGGGATGTTAATGAAGAGAAGAGTGAGAATCACGGTTCATCCACTGATCACGAGCCTCTAACGGAATCTATCTTCAACTTCCATGCTGCTCAAGAAGCTCTTGCTAGTGGTACATCCTTCTGCTTAAATGATAATATCAATTAATCATGATTTGCCTCATAAATTTGTTCTTGCACATTCTGTATGTTGCACTAGGTGGCGTCTTTCTAGATGGATCAATATGCTTAGAGGATGGTACTTATGTTTGACACTTCCTATTTGGGCGTCATTCAAGAAATATATGCTAGCATCATCTAGGAACAATAATATCAAGTTTATTAGTCAGTGAATCTTTTTTTAGGAGGTAGCATTTATAATCCTTATATTGTGCATATCCCTAAAGAATCATTTGGAGATGGGCTATGCGTTCTCCTCTTCCAGGAGGTATTTAACTGTTTATATTTGGTTATCATGCTGTAACGTGTGTGCATATCAGACCATGGTGTTCTTTTCTTTTCTAAAAGCAGCTTTTATGTGCCTAATGTCATGTATTTTACAATTACTATTTCTTTTAATTTTTATCGGTATAATAACTTGGATTATACTATGAACGTGTTTCTGTTAGCAATAGCGGATTTCTTGAGAATGTATTTACAAATACAGAGACCACTTTCAACTTAAATCATGTCTAGCAAACCTTTGATAAAGTGGATCTCATGCTAACTGGAAACAGTCTACATAAGCTTATTAACTTTCTATTTCTGTTTGGACTTGAAACCACTTCCTTCTCTGACTCACCGTTCACACAAGTGCACTTAACTTTCTTTTATCTGCATCCAGACCCTTTCATTCAAATCTGTTATACCTGCTATAGGATGTTCTTGAGGTGTTAGAGATTGTAATTTGAAGAATTTAATTTCTGACTGAGAGAAAATAAAATCAGGATATCAATTCCACCTCCTTTTGTTATGGAAGAATTATGCTTATTGCTGAATTTGTTATTCAGAGCTGACCTTACAGTGTAGTAAGTTAGCCTCACTGGTAAGAGAGCCATTGTCATCACATTTGGGACACATGGGTGAGGAAGGCCTGACCATTTCTCAGCAAAAGAGGCCCTCTCTACGAACAAGGTACTGTTAAGATGGATAGGCTTCTAGCTCCCAGGGTTGGTGCCTTGTGTGCCTTGAACTATTTTTTAGAGGCTTCTTTGGGATTTCAGCCTGCTCCCACTCTATCCGAACGCCTCCTGTCCCACAAGGCTGTAGATAAAACAAATTACAGAGAAGCAAAAGTCATTTTATGTGAAGTTGAGAGTCTTGGTTAAAATAGAACTTTGTTTCTTGCTTTTGAAGCATTAGATGGACAGGTTTAGGTGCTTGCCCTCCTAGTTTAGTAGTGTAATCCGTATCATTGTCATATAAGGATAGTTGGTTATAGTTGTTGGTTTTGTTTGACGCCAGAAACAGATTACAAGGGAAGTACATATTATATCATTTTGAAGTAGTGGACCAGTTCCCTTTCTGTGAACGGTCTTTTTTTGGATGAGCTTTACTATGTCGTATGTTTGTACTATGCTTAAAGAACTTCTACTGATCTGTTCACTGAATAAGTATATCCATTGATTTTTGGTTGTTCACAGTCCATATTCCTTTAGCTTACCTTGTCGTTCTTTCTAATTTAATCTGATAAACCATGAAATATTCTTAAAAAATCATTGAATTTCTTATTATCCGTGCATTGGGACTAATTTTATTGATTTACTTTCTACACAGAAATTCAGAAATTCAAAGAAATAGGGAAAGATACTAACTTTGGTCATTCACTTGAGGATGTTGGTATACCTTCAAATTTCACGTCAGATGACTCAGATTTTCCTAGATCAAGCACATCCGTGCTGTCACAGAA</genome_strand>
        <mrna_strand>GGGAGATAATATACAAATTGGCTAGAAACAATAAAGATAGTTGCAACAGTTCAGGCGGCTATTAATTTCCCAAATTTGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTCTCTTGGAAATCCAGCAGAATAATGAATGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACTTTGCTACAAGTAATGGTACAAAAGGTGAAAGGTCAATGAACTATGATGAAGAATCCAGTGATGAAGCTCAGGACAGAGAAAGGCCAATTGGTGAGGAACTTGGGGCTGGTCTCGAGAGAGGGAATGATAGGGAGTCTGAAAATGTGTCAAAAGAAGATCTAGCTGCTGAATCTCCGTGGGATGTTAATGAAGAGAAGAGTGAGAATCACGGTTCATCCACTGATCACGAGCCTCTAACGGAATCTATCTTCAACTTCCATGCTGCTCAAGAAGCTCTTGCTAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCATAAATTCGAAGAAATAGGGAAAGATACTAACTTTGGTCATTCACTTGAGGATGTTGGTAGACCTTCAAATTTCTCGTCAGATGACTCAAATTTTCCTACATCAAGCACATCCTTGCTGTCACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537672" ref_strand="+" ref_description="SGN-E537672 [TUS-56-G8]">
      <seq>tattaatttcccaaatttgttcccaattctagggtttccataatctcaattctcttcgaatttctcttggaaatccagcagaataatgaatgaaaaggtacgcccagttacttaattgcttctccatttcctaattttttgcatctgcagtacaagtttttacaatgaacgaattcaattttgttcaatatgatgatttttcaagctgcaaattgtcgaagcaatcataattgattttgtcgagaaattttgtttcaattgttatccgtcagctggaatgatggttggtagttctcgatcttgatctgggttcgtaaaaaaggtttaattttaatatatatttgtctctagttatggacttggaagaacaaaatacagctaataataaggaaatgatcacaccaccaatatttgaaaatgctaatcaaagcaaggtagaaagtagtgatgggtctagtcctcctggggataatagcagtaataataatttggatgatgtgaaaggcaagggaattgacattaaagaggttgaggattattcaactcccctggtgaaatcctctccaataactaaggggtttgggttgaaaaaatggaaaaggatgaagcgggatgcgcagcgccaggatggggatagtagtgttaacagcggtaagctgttgaaacggggtttggcgagtgagtttgctaatgcagaaaaactgcaacttttgctgtgggaaggatcaaaaaagtgatggatctgtttctcaacgaatgcagtattcatgaatcctggagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="77054" stop="78441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77354" g_stop="78141" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="785" r_length="785" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E537672" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77354" e_stop="78141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAATTTCCCAAATTTGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTCTCTTGGAAATCCAGCAGAATAATGAATGAAAAGGTACGCCCAGTTACTTAATTGCTTCTCCATTTCCTAATTTTTTGCATCTGCAGTACAAGTTTTTACAATGAACGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGTAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCTGGTGAAATCCTCTCCAATAACTAAGGGGTTTGGGTTGAAAAAATGGAAAAGGATGAAGCGGGATGCGCAGCGCCAGGATGGGGATAGTAGTGTTAACAGCGGTAAGCTGTTGAAACGGGGTTTGGCGAGTGAGTTTGCTAATGCAGAAAAACCTGCAACTTTTGCTGTGGGAAGGATCCAAAAAAGTGATGGATCTGTTTCATCAACGAATGCAGTATTCATGAATCCTGGAGTTCTG</genome_strand>
        <mrna_strand>TATTAATTTCCCAAATTTGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTCTCTTGGAAATCCAGCAGAATAATGAATGAAAAGGTACGCCCAGTTACTTAATTGCTTCTCCATTTCCTAATTTTTTGCATCTGCAGTACAAGTTTTTACAATGAACGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGTAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCTGGTGAAATCCTCTCCAATAACTAAGGGGTTTGGGTTGAAAAAATGGAAAAGGATGAAGCGGGATGCGCAGCGCCAGGATGGGGATAGTAGTGTTAACAGCGGTAAGCTGTTGAAACGGGGTTTGGCGAGTGAGTTTGCTAATGCAGAAAAA-CTGCAACTTTTGCTGTGGGAAGGAT-CAAAAAAGTGATGGATCTGTTTC-TCAACGAATGCAGTATTCATGAATCCTGGAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358010" ref_strand="+" ref_description="SGN-E358010 [cLHT-32-P5]">
      <seq>ttaatttcccaaattcgttcccaattctagggtttccataatctcaattctcttcgaatttatcaaaatctcttggaaatcctgcacaataatgaatgaaaagggtgactttgctacaagtaatggtacaaaaggtgaaaggtcaatgaactatgatggagaatccagtgatgaagctcaggacagagaaagaccaattggtgaggaacttcgggctggtctcgagagagggaatgatagggagtctgaaaatgtgtcacaagaagatctagctgctgaatctccgtgggatgttaatgaagagaagagtgagaatcacggttcatccactgatcacgatcctctaacggaatctatcctcaacttccaggctgctcaagaagctcttgctagtgaaattcagaaattcaaagaaatagggaaagatactaactttggtcattcacttgaggatgttggtataccttcaaatttcacgtcagatgacttagattttcctagaccaagcacatccgtgctgtcacagaacagagatggtgctcaacattctcttaacttctctgagtctgaagtgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="77056" stop="80909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77356" g_stop="77450" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77451" i_stop="78492" i_length="1042">
            <donor d_prob="0.998" d_score="0.57"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78493" g_stop="78784" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="395" r_length="292" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78785" i_stop="80426" i_length="1642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80427" g_stop="80609" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="578" r_length="183" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E358010" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77356" e_stop="77450"/>
          <exon e_start="78493" e_stop="78784"/>
          <exon e_start="80427" e_stop="80609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTCCCAAATTTGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAA--T-T-----TCTCTTGGAAATCCAGCAGAATAATGAATGAAAAGGTACGCCCAGTTACTTAATTGCTTCTCCATTTCCTAATTTTTTGCATCTGCAGTACAAGTTTTTACAATGAACGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGTAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCTGGTGAAATCCTCTCCAATAACTAAGGGGTTTGGGTTGAAAAAATGGAAAAGGATGAAGCGGGATGCGCAGCGCCAGGATGGGGATAGTAGTGTTAACAGCGGTAAGCTGTTGAAACGGGGTTTGGCGAGTGAGTTTGCTAATGCAGAAAAACCTGCAACTTTTGCTGTGGGAAGGATCCAAAAAAGTGATGGATCTGTTTCATCAACGAATGCAGTATTCATGAATCCTGGAGTTCTGAGTGATGGATTTGGTGTAATAGGTGACTCTGGTTTGGCTATGGGGCCTAATTTTATTGCTGTATCGGAATCAGAGAACAGCGAGGATCGGAGTAGTAGGTCTTCTACTGCAGCTAGTGCTCCAAAGGCAAGGTATGAAGCACCTGTGCACCTTGGTTATCCATCTGACAAGCATTGGTTGAGGAGTTTGAGTGGGAAGAGCTTGAGCACATCAGCTCAGAAACCACATCAGAGAAAAGGTCGGGCTGAAACTTGTAAAAAGCCTAGAGGAGAAAGGGTCAAAATCGAGAAGGAAAACTCTCATTCCAGCATGGAATCTGACTCGCGAAGCTCTAATTTCCTCTTTATGCAGGGTGACTTTGCTACAAGTAATGGTACAAAAGGTGAAAGGTCAATGAACTATGATGAAGAATCCAGTGATGAAGCTCAGGACAGAGAAAGGCCAATTGGTGAGGAACTTGGGGCTGGTCTCGAGAGAGGGAATGATAGGGAGTCTGAAAATGTGTCAAAAGAAGATCTAGCTGCTGAATCTCCGTGGGATGTTAATGAAGAGAAGAGTGAGAATCACGGTTCATCCACTGATCACGAGCCTCTAACGGAATCTATCTTCAACTTCCATGCTGCTCAAGAAGCTCTTGCTAGTGGTACATCCTTCTGCTTAAATGATAATATCAATTAATCATGATTTGCCTCATAAATTTGTTCTTGCACATTCTGTATGTTGCACTAGGTGGCGTCTTTCTAGATGGATCAATATGCTTAGAGGATGGTACTTATGTTTGACACTTCCTATTTGGGCGTCATTCAAGAAATATATGCTAGCATCATCTAGGAACAATAATATCAAGTTTATTAGTCAGTGAATCTTTTTTTAGGAGGTAGCATTTATAATCCTTATATTGTGCATATCCCTAAAGAATCATTTGGAGATGGGCTATGCGTTCTCCTCTTCCAGGAGGTATTTAACTGTTTATATTTGGTTATCATGCTGTAACGTGTGTGCATATCAGACCATGGTGTTCTTTTCTTTTCTAAAAGCAGCTTTTATGTGCCTAATGTCATGTATTTTACAATTACTATTTCTTTTAATTTTTATCGGTATAATAACTTGGATTATACTATGAACGTGTTTCTGTTAGCAATAGCGGATTTCTTGAGAATGTATTTACAAATACAGAGACCACTTTCAACTTAAATCATGTCTAGCAAACCTTTGATAAAGTGGATCTCATGCTAACTGGAAACAGTCTACATAAGCTTATTAACTTTCTATTTCTGTTTGGACTTGAAACCACTTCCTTCTCTGACTCACCGTTCACACAAGTGCACTTAACTTTCTTTTATCTGCATCCAGACCCTTTCATTCAAATCTGTTATACCTGCTATAGGATGTTCTTGAGGTGTTAGAGATTGTAATTTGAAGAATTTAATTTCTGACTGAGAGAAAATAAAATCAGGATATCAATTCCACCTCCTTTTGTTATGGAAGAATTATGCTTATTGCTGAATTTGTTATTCAGAGCTGACCTTACAGTGTAGTAAGTTAGCCTCACTGGTAAGAGAGCCATTGTCATCACATTTGGGACACATGGGTGAGGAAGGCCTGACCATTTCTCAGCAAAAGAGGCCCTCTCTACGAACAAGGTACTGTTAAGATGGATAGGCTTCTAGCTCCCAGGGTTGGTGCCTTGTGTGCCTTGAACTATTTTTTAGAGGCTTCTTTGGGATTTCAGCCTGCTCCCACTCTATCCGAACGCCTCCTGTCCCACAAGGCTGTAGATAAAACAAATTACAGAGAAGCAAAAGTCATTTTATGTGAAGTTGAGAGTCTTGGTTAAAATAGAACTTTGTTTCTTGCTTTTGAAGCATTAGATGGACAGGTTTAGGTGCTTGCCCTCCTAGTTTAGTAGTGTAATCCGTATCATTGTCATATAAGGATAGTTGGTTATAGTTGTTGGTTTTGTTTGACGCCAGAAACAGATTACAAGGGAAGTACATATTATATCATTTTGAAGTAGTGGACCAGTTCCCTTTCTGTGAACGGTCTTTTTTTGGATGAGCTTTACTATGTCGTATGTTTGTACTATGCTTAAAGAACTTCTACTGATCTGTTCACTGAATAAGTATATCCATTGATTTTTGGTTGTTCACAGTCCATATTCCTTTAGCTTACCTTGTCGTTCTTTCTAATTTAATCTGATAAACCATGAAATATTCTTAAAAAATCATTGAATTTCTTATTATCCGTGCATTGGGACTAATTTTATTGATTTACTTTCTACACAGAAATTCAGAAATTCAAAGAAATAGGGAAAGATACTAACTTTGGTCATTCACTTGAGGATGTTGGTATACCTTCAAATTTCACGTCAGATGACTCAGATTTTCCTAGATCAAGCACATCCGTGCTGTCACAGAACAGAGATGGTGCTCAAAGTTCTCTTAACTCCTTGGAGTCTGAAGTGTATA</genome_strand>
        <mrna_strand>TTAATTTCCCAAATTCGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTATCAAAATCTCTTGGAAATCCTGCACAATAATGAATGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACTTTGCTACAAGTAATGGTACAAAAGGTGAAAGGTCAATGAACTATGATGGAGAATCCAGTGATGAAGCTCAGGACAGAGAAAGACCAATTGGTGAGGAACTTCGGGCTGGTCTCGAGAGAGGGAATGATAGGGAGTCTGAAAATGTGTCACAAGAAGATCTAGCTGCTGAATCTCCGTGGGATGTTAATGAAGAGAAGAGTGAGAATCACGGTTCATCCACTGATCACGATCCTCTAACGGAATCTATCCTCAACTTCCAGGCTGCTCAAGAAGCTCTTGCTAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCAGAAATTCAAAGAAATAGGGAAAGATACTAACTTTGGTCATTCACTTGAGGATGTTGGTATACCTTCAAATTTCACGTCAGATGACTTAGATTTTCCTAGACCAAGCACATCCGTGCTGTCACAGAACAGAGATGGTGCTCAACATTCTCTTAACTTCTCTGAGTCTGAAGTGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266145" ref_strand="+" ref_description="SGN-E266145 [cLEI-6-F10]">
      <seq>tcccaaatttgtatcccaagggtaggtgtttccatagatctcaattctcattcgaatttctcttggaaataccagctagaataatgtaatgaataaggtaccgcccagttaccattaattgcttctccatttacctaattgttttgcattctgcagtacaacgtttttacaatgaaccgaattcaattttgttcaatatgatgatttttcaagctgcaaattgtcgaagcaatcataattgattttgtcgagaaattttgtttcaattgttatccgtcagctggaatgatggttggtagttctcgatcttgatctgggttcgtaaaaaaggtttaattttaatatatatttgtctctagttatggacttggaagaacaaaatacagctaataataaggaaatgatcacaccaccaatatttgaaaatgctaatcaaagcaaggtagaaagtagtgatgggtctagtcctcctggggataatagcagcaataataatttggatgatgtgaaaggcaagggaattgacattaaagaggttgaggattattcaactcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="77083" stop="78203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77362" g_stop="77903" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E266145" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77362" e_stop="77903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAAATTTGT-TCCCAATTCTAGG-GTTTCCATA-ATCTCAATTCTC-TTCGAATTTCTCTTGGAAAT-CCAGC-AGAATAATG-AATGAA-AAGGTA-CGCCCAGTTA-C-TTAATTGCTTCTCCATTT-CCTAATT-TTTTGCA-TCTGCAGTACAA-GTTTTTACAATGAA-CGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGTAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCT</genome_strand>
        <mrna_strand>TCCCAAATTTGTATCCCAAGGGTAGGTGTTTCCATAGATCTCAATTCTCATTCGAATTTCTCTTGGAAATACCAGCTAGAATAATGTAATGAATAAGGTACCGCCCAGTTACCATTAATTGCTTCTCCATTTACCTAATTGTTTTGCATTCTGCAGTACAACGTTTTTACAATGAACCGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGCAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213688" ref_strand="+" ref_description="SGN-E213688 [cLEC-76-J1]">
      <seq>tcccaattctagggtttccataatctcaattctcttcgaatttctcttggaaatccagcagaataatgaatgaaaagggtgactttgctacaagtaatggtacaaaaggtgaaaggtcaatgaactatgatgaagaatccagtgatgaagctcaggacagagaaaggccaattggtgaggaacttggggctggtctcgagagagggaatgatagggagtctgaaaatgtgtcaaaagaagatctagctgctgaatctccgtgggatgttaatgaagagaagagtgagaatcacggttcatccactgatcacgagcctctaacggaatctatcttcaacttccatgctgctcaagaagctcttgctagtgaaattcagaaattcaaagaaatagggaaagatactaactttggtcattcacttgaggatgttggtataccttcaaatttcacgtcagatgactcagattttcctagatcaagcacatccgtgctgtcacagaacagagatggtgctcaaagttctcttaactccttggagtctgaagtgtatagcctaaagcagaatatattactgttgcaaaaccaggttcaggaagcagctgacctggctnaatccaggaaagcagagtactgaacttgaagccatttttagtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="77074" stop="81016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77374" g_stop="77450" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77451" i_stop="78492" i_length="1042">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78493" g_stop="78784" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="369" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78785" i_stop="80426" i_length="1642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80427" g_stop="80716" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="657" r_length="288" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E213688" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77374" e_stop="77450"/>
          <exon e_start="78493" e_stop="78784"/>
          <exon e_start="80427" e_stop="80716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTCTCTTGGAAATCCAGCAGAATAATGAATGAAAAGGTACGCCCAGTTACTTAATTGCTTCTCCATTTCCTAATTTTTTGCATCTGCAGTACAAGTTTTTACAATGAACGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGTAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCTGGTGAAATCCTCTCCAATAACTAAGGGGTTTGGGTTGAAAAAATGGAAAAGGATGAAGCGGGATGCGCAGCGCCAGGATGGGGATAGTAGTGTTAACAGCGGTAAGCTGTTGAAACGGGGTTTGGCGAGTGAGTTTGCTAATGCAGAAAAACCTGCAACTTTTGCTGTGGGAAGGATCCAAAAAAGTGATGGATCTGTTTCATCAACGAATGCAGTATTCATGAATCCTGGAGTTCTGAGTGATGGATTTGGTGTAATAGGTGACTCTGGTTTGGCTATGGGGCCTAATTTTATTGCTGTATCGGAATCAGAGAACAGCGAGGATCGGAGTAGTAGGTCTTCTACTGCAGCTAGTGCTCCAAAGGCAAGGTATGAAGCACCTGTGCACCTTGGTTATCCATCTGACAAGCATTGGTTGAGGAGTTTGAGTGGGAAGAGCTTGAGCACATCAGCTCAGAAACCACATCAGAGAAAAGGTCGGGCTGAAACTTGTAAAAAGCCTAGAGGAGAAAGGGTCAAAATCGAGAAGGAAAACTCTCATTCCAGCATGGAATCTGACTCGCGAAGCTCTAATTTCCTCTTTATGCAGGGTGACTTTGCTACAAGTAATGGTACAAAAGGTGAAAGGTCAATGAACTATGATGAAGAATCCAGTGATGAAGCTCAGGACAGAGAAAGGCCAATTGGTGAGGAACTTGGGGCTGGTCTCGAGAGAGGGAATGATAGGGAGTCTGAAAATGTGTCAAAAGAAGATCTAGCTGCTGAATCTCCGTGGGATGTTAATGAAGAGAAGAGTGAGAATCACGGTTCATCCACTGATCACGAGCCTCTAACGGAATCTATCTTCAACTTCCATGCTGCTCAAGAAGCTCTTGCTAGTGGTACATCCTTCTGCTTAAATGATAATATCAATTAATCATGATTTGCCTCATAAATTTGTTCTTGCACATTCTGTATGTTGCACTAGGTGGCGTCTTTCTAGATGGATCAATATGCTTAGAGGATGGTACTTATGTTTGACACTTCCTATTTGGGCGTCATTCAAGAAATATATGCTAGCATCATCTAGGAACAATAATATCAAGTTTATTAGTCAGTGAATCTTTTTTTAGGAGGTAGCATTTATAATCCTTATATTGTGCATATCCCTAAAGAATCATTTGGAGATGGGCTATGCGTTCTCCTCTTCCAGGAGGTATTTAACTGTTTATATTTGGTTATCATGCTGTAACGTGTGTGCATATCAGACCATGGTGTTCTTTTCTTTTCTAAAAGCAGCTTTTATGTGCCTAATGTCATGTATTTTACAATTACTATTTCTTTTAATTTTTATCGGTATAATAACTTGGATTATACTATGAACGTGTTTCTGTTAGCAATAGCGGATTTCTTGAGAATGTATTTACAAATACAGAGACCACTTTCAACTTAAATCATGTCTAGCAAACCTTTGATAAAGTGGATCTCATGCTAACTGGAAACAGTCTACATAAGCTTATTAACTTTCTATTTCTGTTTGGACTTGAAACCACTTCCTTCTCTGACTCACCGTTCACACAAGTGCACTTAACTTTCTTTTATCTGCATCCAGACCCTTTCATTCAAATCTGTTATACCTGCTATAGGATGTTCTTGAGGTGTTAGAGATTGTAATTTGAAGAATTTAATTTCTGACTGAGAGAAAATAAAATCAGGATATCAATTCCACCTCCTTTTGTTATGGAAGAATTATGCTTATTGCTGAATTTGTTATTCAGAGCTGACCTTACAGTGTAGTAAGTTAGCCTCACTGGTAAGAGAGCCATTGTCATCACATTTGGGACACATGGGTGAGGAAGGCCTGACCATTTCTCAGCAAAAGAGGCCCTCTCTACGAACAAGGTACTGTTAAGATGGATAGGCTTCTAGCTCCCAGGGTTGGTGCCTTGTGTGCCTTGAACTATTTTTTAGAGGCTTCTTTGGGATTTCAGCCTGCTCCCACTCTATCCGAACGCCTCCTGTCCCACAAGGCTGTAGATAAAACAAATTACAGAGAAGCAAAAGTCATTTTATGTGAAGTTGAGAGTCTTGGTTAAAATAGAACTTTGTTTCTTGCTTTTGAAGCATTAGATGGACAGGTTTAGGTGCTTGCCCTCCTAGTTTAGTAGTGTAATCCGTATCATTGTCATATAAGGATAGTTGGTTATAGTTGTTGGTTTTGTTTGACGCCAGAAACAGATTACAAGGGAAGTACATATTATATCATTTTGAAGTAGTGGACCAGTTCCCTTTCTGTGAACGGTCTTTTTTTGGATGAGCTTTACTATGTCGTATGTTTGTACTATGCTTAAAGAACTTCTACTGATCTGTTCACTGAATAAGTATATCCATTGATTTTTGGTTGTTCACAGTCCATATTCCTTTAGCTTACCTTGTCGTTCTTTCTAATTTAATCTGATAAACCATGAAATATTCTTAAAAAATCATTGAATTTCTTATTATCCGTGCATTGGGACTAATTTTATTGATTTACTTTCTACACAGAAATTCAGAAATTCAAAGAAATAGGGAAAGATACTAACTTTGGTCATTCACTTGAGGATGTTGGTATACCTTCAAATTTCACGTCAGATGACTCAGATTTTCCTAGATCAAGCACATCCGTGCTGTCACAGAACAGAGATGGTGCTCAAAGTTCTCTTAACTCCTTGGAGTCTGAAGTGTATAGCCTAAAGCAGAATATATTACTGTTGCAAAACCAGGTTCAGGAGGCAGCTGACCTGGCTAAATCCAAGGAAGCAAGAGTTACTGAACTTGAAGCCATTTTAAGTAGT</genome_strand>
        <mrna_strand>TCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTCTCTTGGAAATCCAGCAGAATAATGAATGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACTTTGCTACAAGTAATGGTACAAAAGGTGAAAGGTCAATGAACTATGATGAAGAATCCAGTGATGAAGCTCAGGACAGAGAAAGGCCAATTGGTGAGGAACTTGGGGCTGGTCTCGAGAGAGGGAATGATAGGGAGTCTGAAAATGTGTCAAAAGAAGATCTAGCTGCTGAATCTCCGTGGGATGTTAATGAAGAGAAGAGTGAGAATCACGGTTCATCCACTGATCACGAGCCTCTAACGGAATCTATCTTCAACTTCCATGCTGCTCAAGAAGCTCTTGCTAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCAGAAATTCAAAGAAATAGGGAAAGATACTAACTTTGGTCATTCACTTGAGGATGTTGGTATACCTTCAAATTTCACGTCAGATGACTCAGATTTTCCTAGATCAAGCACATCCGTGCTGTCACAGAACAGAGATGGTGCTCAAAGTTCTCTTAACTCCTTGGAGTCTGAAGTGTATAGCCTAAAGCAGAATATATTACTGTTGCAAAACCAGGTTCAGGAAGCAGCTGACCTGGCTNAATCCAGGAAAGC-AGAG-TACTGAACTTGAAGCCATTTTTAGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264713" ref_strand="+" ref_description="SGN-E264713 [cLEG-72-H15]">
      <seq>gaaaatgtgtcaaaagaagatctagctgctgaatctccgtgggatgttaatgaagagaagagtgagaatcacggttcatccactgatcacgagcctctaacggaatctatcttcaacttccatgctgctcaagaagctcttgctagtgaaattcagaaattcaaagaaatagggaaagatactaactttggtcattcacttgaggatgttggtataccttcaaatttcacgtcagatgactcagattttcctagatcaagcacatccgtgctgtcacagaacagagatggtgctcaaagttctcttaactccttggagtctgaagtgtatagcctaaagcagaatatattactgttgcaaaaccaggttcaggaggcagctgacctggctaaatccaaggaagcaagagttactgaacttgaagccattttaagtagtagctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="78337" stop="81025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78637" g_stop="78784" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78785" i_stop="80426" i_length="1642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80427" g_stop="80725" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="447" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E264713" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78637" e_stop="78784"/>
          <exon e_start="80427" e_stop="80725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGTGTCAAAAGAAGATCTAGCTGCTGAATCTCCGTGGGATGTTAATGAAGAGAAGAGTGAGAATCACGGTTCATCCACTGATCACGAGCCTCTAACGGAATCTATCTTCAACTTCCATGCTGCTCAAGAAGCTCTTGCTAGTGGTACATCCTTCTGCTTAAATGATAATATCAATTAATCATGATTTGCCTCATAAATTTGTTCTTGCACATTCTGTATGTTGCACTAGGTGGCGTCTTTCTAGATGGATCAATATGCTTAGAGGATGGTACTTATGTTTGACACTTCCTATTTGGGCGTCATTCAAGAAATATATGCTAGCATCATCTAGGAACAATAATATCAAGTTTATTAGTCAGTGAATCTTTTTTTAGGAGGTAGCATTTATAATCCTTATATTGTGCATATCCCTAAAGAATCATTTGGAGATGGGCTATGCGTTCTCCTCTTCCAGGAGGTATTTAACTGTTTATATTTGGTTATCATGCTGTAACGTGTGTGCATATCAGACCATGGTGTTCTTTTCTTTTCTAAAAGCAGCTTTTATGTGCCTAATGTCATGTATTTTACAATTACTATTTCTTTTAATTTTTATCGGTATAATAACTTGGATTATACTATGAACGTGTTTCTGTTAGCAATAGCGGATTTCTTGAGAATGTATTTACAAATACAGAGACCACTTTCAACTTAAATCATGTCTAGCAAACCTTTGATAAAGTGGATCTCATGCTAACTGGAAACAGTCTACATAAGCTTATTAACTTTCTATTTCTGTTTGGACTTGAAACCACTTCCTTCTCTGACTCACCGTTCACACAAGTGCACTTAACTTTCTTTTATCTGCATCCAGACCCTTTCATTCAAATCTGTTATACCTGCTATAGGATGTTCTTGAGGTGTTAGAGATTGTAATTTGAAGAATTTAATTTCTGACTGAGAGAAAATAAAATCAGGATATCAATTCCACCTCCTTTTGTTATGGAAGAATTATGCTTATTGCTGAATTTGTTATTCAGAGCTGACCTTACAGTGTAGTAAGTTAGCCTCACTGGTAAGAGAGCCATTGTCATCACATTTGGGACACATGGGTGAGGAAGGCCTGACCATTTCTCAGCAAAAGAGGCCCTCTCTACGAACAAGGTACTGTTAAGATGGATAGGCTTCTAGCTCCCAGGGTTGGTGCCTTGTGTGCCTTGAACTATTTTTTAGAGGCTTCTTTGGGATTTCAGCCTGCTCCCACTCTATCCGAACGCCTCCTGTCCCACAAGGCTGTAGATAAAACAAATTACAGAGAAGCAAAAGTCATTTTATGTGAAGTTGAGAGTCTTGGTTAAAATAGAACTTTGTTTCTTGCTTTTGAAGCATTAGATGGACAGGTTTAGGTGCTTGCCCTCCTAGTTTAGTAGTGTAATCCGTATCATTGTCATATAAGGATAGTTGGTTATAGTTGTTGGTTTTGTTTGACGCCAGAAACAGATTACAAGGGAAGTACATATTATATCATTTTGAAGTAGTGGACCAGTTCCCTTTCTGTGAACGGTCTTTTTTTGGATGAGCTTTACTATGTCGTATGTTTGTACTATGCTTAAAGAACTTCTACTGATCTGTTCACTGAATAAGTATATCCATTGATTTTTGGTTGTTCACAGTCCATATTCCTTTAGCTTACCTTGTCGTTCTTTCTAATTTAATCTGATAAACCATGAAATATTCTTAAAAAATCATTGAATTTCTTATTATCCGTGCATTGGGACTAATTTTATTGATTTACTTTCTACACAGAAATTCAGAAATTCAAAGAAATAGGGAAAGATACTAACTTTGGTCATTCACTTGAGGATGTTGGTATACCTTCAAATTTCACGTCAGATGACTCAGATTTTCCTAGATCAAGCACATCCGTGCTGTCACAGAACAGAGATGGTGCTCAAAGTTCTCTTAACTCCTTGGAGTCTGAAGTGTATAGCCTAAAGCAGAATATATTACTGTTGCAAAACCAGGTTCAGGAGGCAGCTGACCTGGCTAAATCCAAGGAAGCAAGAGTTACTGAACTTGAAGCCATTTTAAGTAGTAGCTCAAAG</genome_strand>
        <mrna_strand>GAAAATGTGTCAAAAGAAGATCTAGCTGCTGAATCTCCGTGGGATGTTAATGAAGAGAAGAGTGAGAATCACGGTTCATCCACTGATCACGAGCCTCTAACGGAATCTATCTTCAACTTCCATGCTGCTCAAGAAGCTCTTGCTAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCAGAAATTCAAAGAAATAGGGAAAGATACTAACTTTGGTCATTCACTTGAGGATGTTGGTATACCTTCAAATTTCACGTCAGATGACTCAGATTTTCCTAGATCAAGCACATCCGTGCTGTCACAGAACAGAGATGGTGCTCAAAGTTCTCTTAACTCCTTGGAGTCTGAAGTGTATAGCCTAAAGCAGAATATATTACTGTTGCAAAACCAGGTTCAGGAGGCAGCTGACCTGGCTAAATCCAAGGAAGCAAGAGTTACTGAACTTGAAGCCATTTTAAGTAGTAGCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537670" ref_strand="+" ref_description="SGN-E537670 [TUS-56-G8](-)">
      <seq>tgcaaaaccaggttcaggaggcagctgacctggctaaatccaaggaagcaagagttactgaacttgaaccctttttaagtagtagctcaaagagtgaagaagagactactgaaggtgagttcgagagtctcttcagactgaaaattgaagctgaagttcagtatgtggcattgtcaacaacagcccaaaagttgagaagtgcagcagtatatcaacttcccctcttggaagaacagaagacactagtttcagaacaagcccagatggtgcacgtgttaggagatgccgaagcaaaggctgtagtgctcaagacccaaaccaagaagttggaaacttcctgtgaagatttagcaagcactgccgaaaagctaaagctacagaagaaagtctgtaagtacagttcgtgttttttcatacagttggtgttgttggctgttgttgttggactgtttttgatgcagatatctcctgatcatgctgaacttgtacccccctaatgttagagaagtttctttctctctctttttttcttccactccctattatcaacatcgtcatccttcaatgttgaaagttagattagtttgttttttagatgtctatagatagctgaaatacctacttctcattttgctgagtctgtattcaagggtaatcatagaagatgatccgttttttgcttctgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="80334" stop="81623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80634" g_stop="81324" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="732"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E537670" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80634" e_stop="81324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAAACCAGGTTCAGGAGGCAGCTGACCTGGCTAAATCCAAGGAAGCAAGAGTTACTGAACTTGAAGCCATTTTAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAAAAG</genome_strand>
        <mrna_strand>TGCAAAACCAGGTTCAGGAGGCAGCTGACCTGGCTAAATCCAAGGAAGCAAGAGTTACTGAACTTGAACCCTTTTTAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCCCAAAAGTTGAGAAGTGCAGCAGTATATCAACTTCCCCTCTTGGAAGAACAGAAGACACTAGTTTCAGAACAAGCCCAGATGGTGCACGTGTTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACCCAAACCAAGAAGTTGGAAACTTCCTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTTTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCCCCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376654" ref_strand="+" ref_description="SGN-E376654 [TUS-18-I24](-)">
      <seq>ttaagtagtagctcaaagagtgaagaagagactactgaaggtgagttcgagagtctcttcagactgaaaattgaagctgaagttcagtatgtggcattgtcaacaacagcacaaaagttgagaagtgcagcagtatatcaacttaccctcttggaagaacagaagacactagcttcagaacaagcacagatggtgcacgtgctaggagatgccgaagcaaaggctgtagtgctcaagacacaaaccaagaagttggaaacttactgtgaagatttagcaagcactgccgaaaagctaaagctacagaagaaagtctgtaagtacagttcgtgttttttcatacagttggtgttgttggctgttgttgttggactgtttctgatgcagatatctcctgatcatgctgaacttgtacccacctaatgttagagaagtttctttctctctctttttttcttccactccctattatcaacatcgtcatccttcaatgttgaaagttagattagtttgttttttagatgtctatagatagctgaaatacctacttctcattttgctgagtctgtattcaagggtaatcatagaagatgatccgttttttgcttctgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="80408" stop="81623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80708" g_stop="81330" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E376654" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80708" e_stop="81330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAAAAGGCTGTG</genome_strand>
        <mrna_strand>TTAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389740" ref_strand="+" ref_description="SGN-E389740 [TUS-4-C12]">
      <seq>ttaagtagtagctcaaagagtgaagaagagactactgaaggtgagttcgagagtctcttcagactgaaaattgaagctgaagttcagtatgtggcattgtcaacaacagcacaaaagttgagaagtgcagcagtatatcaacttaccctcttggaagaacagaagacactagcttcagaacaagcacagatggtgcacgtgctaggagatgccgaagcaaaggctgtagtgctcaagacacaaaccaagaagttggaaacttactgtgaagatttagcaagcactgccgaaaagctaaagctacagaagaaagtctgtaagtacagttcgtgttttttcatacagttggtgttgttggctgttgttgttggactgtttctgatgcagatatctcctgatcatgctgaacttgtacccacctaatgttagagaagtttctttctctctctttttttcttccactccctattatcaacatcgtcatccttcaatgttgaaagttagattagtttgttttttagatgtctatagatagctgaaatacctacttctcattttgctgagtctgtattcaagggtaatcatagaagatgatccgttttttgcttctgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="80408" stop="81623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80708" g_stop="81324" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E389740" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80708" e_stop="81324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAAAAG</genome_strand>
        <mrna_strand>TTAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389476" ref_strand="+" ref_description="SGN-E389476 [TUS-4-C12](-)">
      <seq>ttaagtagtagctcaaagagtgaagaagagactactgaaggtgagttcgagagtctcttcagactgaaaattgaagctgaagttcagtatgtggcattgtcaacaacagcacaaaagttgagaagtgcagcagtatatcaacttaccctcttggaagaacagaagacactagcttcagaacaagcacagatggtgcacgtgctaggagatgccgaagcaaaggctgtagtgctcaagacacaaaccaagaagttggaaacttactgtgaagatttagcaagcactgccgaaaagctaaagctacagaagaaagtctgtaagtacagttcgtgttttttcatacagttggtgttgttggctgttgttgttggactgtttctgatgcagatatctcctgatcatgctgaacttgtacccacctaatgttagagaagtttctttctctctctttttttcttccactccctattatcaacatcgtcatccttcaatgttgaaagttagattagtttgttttttagatgtctatagataggagaaatacctacttctcattttgctgagtcagtattcaagggtatcatgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="80408" stop="81598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80708" g_stop="81298" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E389476" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80708" e_stop="81298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGA</genome_strand>
        <mrna_strand>TTAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGGAGAAATACCTACTTCTCATTTTGCTGAGTCAGTATTCAAGGGT-ATCAT-GAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376655" ref_strand="+" ref_description="SGN-E376655 [TUS-18-I24]">
      <seq>taagtagtagctcaaagagtgaagaagagactactgaaggtgagttcgagagtctcttcagactgaaaattgaagctgaagttcagtatgtggcattgtcaacaacagcacaaaagttgagaagtgcagcagtatatcaacttaccctcttggaagaacagaagacactagcttcagaacaagcacagatggtgcacgtgctaggagatgccgaagcaaaggctgtagtgctcaagacacaaaccaagaagttggaaacttactgtgaagatttagcaagcactgccgaaaagctaaagctacagaagaaagtctgtaagtacagttcgtgttttttcatacagttggtgttgttggctgttgttgttggactgtttctgatgcagatatctcctgatcatgctgaacttgtacccacctaatgttagagaagtttctttctctctctttttttcttccactccctattatcaacatcgtcatccttcaatgttgaaagttagattagtttgttttttagatgtctatagatagctgaaatacctacttctcattttgctgagtctgtattcaagggtaatcatagaagatgatccgttttttgcttctgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="80409" stop="81623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80709" g_stop="81330" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E376655" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80709" e_stop="81330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAAAAGGCTGTG</genome_strand>
        <mrna_strand>TAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231732" ref_strand="+" ref_description="SGN-E231732 [cLED-4-B8]">
      <seq>taagtagtagctcaaagagtgaagaagagactactgaaggtgagttcgagagtctcttcagactgaaaattgaagctgaagttcagtatgtggcattgtcaacaacagcacaaaagttgagaagtgcagcagtatatcaacttaccctcttggaagaacagaagacactagcttcagaacaagcacagatggtgcacgtgctaggagatgccgaagcaaaggctgtagtgctcaagacacaaaccaagaagttggaaacttactgtgaagatttagcaagcactgccgaaaagctaaagctacagaagaaagtctgtaagtacagttcgtgttttttcatacagttggtgttgttggctgttgttgttggactgtttctgatgcagatatctcctgatcatgctgaacttgtacccacctaatgttagagaagtttctttctctctctttttttcttccactccctattatcaacatcgtcatccttcaatgttgaaagttagattagtttgttttttagatgtctatagatagctgaaatacctacttctcattttgctgagtctgtattcaagggtaatcatagaagatgatccgttttttgcttctgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="80409" stop="81623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80709" g_stop="81324" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E231732" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80709" e_stop="81324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAAAAG</genome_strand>
        <mrna_strand>TAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321297" ref_strand="+" ref_description="SGN-E321297 [cTOB-23-M18]">
      <seq>tcagaacaagcacagatggtgcacgtgctaggagatgccgaagcaaaggctgtagtgctcaagacacaaaccaagaagttggaaacttactgtgaagatttagcaagcactgccgaaaagctaaagctacagaagaaagtctgtaagtacagttcgtgttttttcatacagttggtgttgttggctgttgttgttggactgtttctgatgcagatatctcctgatcatgctgaacttgtacccacctaatgttagagaagtttctttctctctctttttttcttccactccctattatcaacatcgtcatccttcaatgttgaaagttagattagtttgttttttagatgtctatagatagctgaaatacctacttctcattttgctgagtctgtattcaagggtaatcatagaagatgatccgttttttgcttctgtagaaggctgtgcactttgaagttttttaacctggtctcatatcaatacgactttagacatttctgttcgtgtgtgatgaactatgtaatggtctaattggattgttggagttgcacaaacctatacaacttcagacatttcngtttgaagttgaagcaggaatggtatgcacatgaaacattcaaccacatggttgttgaagctcatgtagaaaaagcagcctgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="80582" stop="81848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80882" g_stop="81548" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E321297" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80882" e_stop="81548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAAAAGGCTGTGCACTTTGAAGTTTTTTAACCTGGTCTCATATCAATACGACTTTAGACATTTCTGTTCGTGTGTGATGAACTATGTAATGGTCTAATTGGATTGTTGGAGTTGCAGAAACCTATACAACTTCAGACATTTCGGTTTGAAGTTGAAGCAAAAATGGTATGCACATGAAACATTCAACCACATGGTTGTTGAAGCTCATGTAGAAAAGCAAGCCTGAACTT</genome_strand>
        <mrna_strand>TCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAGAAGGCTGTGCACTTTGAAGTTTTTTAACCTGGTCTCATATCAATACGACTTTAGACATTTCTGTTCGTGTGTGATGAACTATGTAATGGTCTAATTGGATTGTTGGAGTTGCACAAACCTATACAACTTCAGACATTTCNGTTTGAAGTTGAAGCAGGAATGGTATGCACATGAAACATTCAACCACATGGTTGTTGAAGCTCATGTAGAAAAAGCAGCCTGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736857" ref_strand="-" ref_description="SGN-E736857 [LC07CC11]">
      <seq>gggggaaagggggccccccccccccccccgggnntttttttttttttttttttttttttttttttttttttttttttttnnnnggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattctgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgataggtttgaaggcgatgggtttgttgaggaagagggaagagtcggtgggtttgttgagaggtctgagaccttggaaagttggtgcagaaaacagagctgatgccattttttgagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70291" stop="87985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84476" g_stop="84549" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84550" i_stop="87148" i_length="2599">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87149" g_stop="87685" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="611" r_length="537" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E736857" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736857" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84476" e_stop="84549"/>
          <exon e_start="87149" e_stop="87685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTAATTTTTGAATGAAAAATTATTACTATAAGTTGCATTTTAATATGATAAGAAAACTGAATTTCAAAATTTTGGTCAAAATTCACGTAATTTGAAACTTCGAATCTTGGTAAATTAAAAGCCATATATAGTTTGGGTCGGAAGGGGAGGTAGATGTGGTGTGATTGCTTGATTTCTTTTTCAAAAATAACCTTTCTGTCTCCGTTGTAAATCAATACAGTTTATATGTTATTGTTGTTGTAGTATTTAATAAGACTAAAAAAATAATGAAATCTCGATAAATTTAGTCAAACTTTATCATTTATTCTGATTAGGAAGAAAGAGAAATTCAAGGACACATAGAAGACCAAAGGAAATCTTTAAACAATTGGACTCTAAACTTTGGTTGCAAGTATATAACTATAAAAAAGAATGTGTAAATCCTTTTAACAAATTACTCCTTTCATCTCAAATCACTAGTGACGTTTTCGATATTTTGAAATGTATTTTTTATTATATTAATATTTGAGAATTAATTTTTTTGAATCTAGAATTTATCAAAAATTTAAGGTCAGATAAATATTCATTTTTTTTAGCTTCACTCGTGGAATTAAATTGAATATGGTATTATCATATTGATATTATATCGGGTACAATAGTGTCATATTGATATAAGAAGAACCATATTATAATATTGATATTATCATATTGATGTTATATTATCATATTGATATTATATTGGGTATAATAGTATCATATTGATAAAAGAAGAATCACAATTTAAAATACTTTTCAGAAAGATTTTGAATATTTAACTTTTAAATTTCAAATATTAAATTAGTCAAATTAACTTATGATTTATAACTTATACTTCAAATATTAAATTAGTCAAATTAACTTATGATTTATAACTTATACTACAATATTTTTCATGTAGTTTTTGAATATTAGTCTGTCCAATATAATTTTTCAAAAATTAGTTAAATTAACTTTTGAAAAGAAATGATATTTTGAGAGGTAGGGAAGTATTGTGATGATTGAATTGATATATTAGTTAATTTGTAAGTGTTCAAACCGTAAGTCACGGCTTAGGAAGAGGAATAGAAGGTCTTGTAAGAAGAGACTATAAAGGAGAAAAACCAAAAACACACACACACTATATATATATATATATATATATATATATATAATGCAAAAATCATTTTTTGTTGATATATTTACCTACGTGGGATCAGAAATTAGATGTATCCAGTATTTACACTGATAAACTAAATATAACATTTTACCATAACTAGCTAACATTTTACCATAACTAGCTATTGTAGAAACTATAGTTTAGTTTATCATAGCAAAACTATATACATATATACTTTGATTTAGAACAAGAAACTATTTTTTACAAGTTGAAAAATACATTTACTTTTTTAAACCTAGGCTAAATTAATTCTTTTTATATTAATTAGCCATACACAAACAAATTACAAAAGCTTTTCATATGACACCTATAGAGAAAATGAAGATGGTGACTAATTTTCCTTTTCTGAAAGATTATAATTCTGAAACATTTAGGAGGGAATTAACGGTAAAAAATATATGGTAAAGGCAAGAAATAAGTATTATTAAGTCCCAACTGTTTACTGCCCACATTCTCGTGACCATAATATATATGAAAGCGTCATTCCAAAATTCCCCACTATTATTTTTACTTTATATATTCTCATCATCGCTTGGTATGAAGTATAAAAATTATATTGAATAACGTATGTTAGAAATAAAAAGCTTAGAAAAAGTTTTGTATTGTTAATATCATGATTTATTATTGATAAGAATACTGTTGAACAAGACGTACAAGTAAGATTATGTATTAGCTAGTTATACTATTGAAAACACGAGGTTTTAACCAAACTAAGTCATTATATAAAGTCATTCACCAAAATAATATGTTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACAGTAACGTTTTAGGATATATTTTATTTTTTAAAAGTTGATGGCGTCAGATTGATATACATTACTCACAGTAACGTTTTACTCCTAAAACGTTACTCACAGCAACGTTTTAGGTGTAAAACGTTACTGAAAATAACGTTTTAAAAGTAAAACGTTACTTACAGTAACATATATCAACCTAATGCTGTTAGTTTTTAAAAAATAAAATATATCCTAAAACGTTACCGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAATGTATTACTTTGGTAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTGAAAACACTATCAAAAAAGGAATTCGATAATACCAGTATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTG</genome_strand>
        <mrna_strand>GGGGGAAAGGGGGCCCCCCCCCCCCCCCCGGGNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTNNNNGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717791" ref_strand="+" ref_description="SGN-E717791 [FC02DA07]">
      <seq>aatcggccgaattgactgaaatccccaataaccacatatactcctcaacacacccaaatttgcattgcatttcatcaaacaacaaactcaaaaaatggcatcagctctgttttctgcaccaactttccaaggtctcaaacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatctcaaaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttactatatgtgtttttgttaactgattttatgtgaaattcatgtggttttgtgccnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="88053" stop="70291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87751" g_stop="87153" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="615" r_length="599" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87152" i_stop="84530" i_length="2623">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84529" g_stop="84478" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="667" r_length="52" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E717791" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87751" e_stop="87153"/>
          <exon e_start="84529" e_stop="84478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCCCCAATAACCACATATACTCCTCAACACACCCAAATTTGCATTGCATTTCATCAAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCAAAAAATTTCGCTGTGATGAATGGTTTCCAATAATGCCACGAGGCAGAGAGCCTTTCAACTGAAATAGATCTAATCGGATTGCTTGGTTCCCATTGCTTCAAAAATGAATTGAAAATAATATCTTAGAAGATGACTATATAAATTATAGCTCCATCACTTCGCGTAGGGATCCGTATGGTAGGATATATTAGAGAAAATAATACTGGTATTATCGAATTCCTTTTTTGATAGTGTTTTCAGAATTTTTAACCAAACTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACGGTAACGTTTTAGGATATATTTTATTTTTTAAAAACTAACAGCATTAGGTTGATATATGTTACTGTAAGTAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACACCTAAAACGTTGCTGTGAGTAACGTTTTAGGAGTAAAACGTTACTGTGAGTAATGTATATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAACATATTATTTTGGTGAATGACTTTATATAATGACTTAGTTTGGTTAAAACCTCGTGTTTTCAATAGTATAACTAGCTAATACATAATCTTACTTGTACGTCTTGTTCAACAGTATTCTTATCAATAATAAATCATGATATTAACAATACAAAACTTTTTCTAAGCTTTTTATTTCTAACATACGTTATTCAATATAATTTTTATACTTCATACCAAGCGATGATGAGAATATATAAAGTAAAAATAATAGTGGGGAATTTTGGAATGACGCTTTCATATATATTATGGTCACGAGAATGTGGGCAGTAAACAGTTGGGACTTAATAATACTTATTTCTTGCCTTTACCATATATTTTTTACCGTTAATTCCCTCCTAAATGTTTCAGAATTATAATCTTTCAGAAAAGGAAAATTAGTCACCATCTTCATTTTCTCTATAGGTGTCATATGAAAAGCTTTTGTAATTTGTTTGTGTATGGCTAATTAATATAAAAAGAATTAATTTAGCCTAGGTTTAAAAAAGTAAATGTATTTTTCAACTTGTAAAAAATAGTTTCTTGTTCTAAATCAAAGTATATATGTATATAGTTTTGCTATGATAAACTAAACTATAGTTTCTACAATAGCTAGTTATGGTAAAATGTTAGCTAGTTATGGTAAAATGTTATATTTAGTTTATCAGTGTAAATACTGGATACATCTAATTTCTGATCCCACGTAGGTAAATATATCAACAAAAAATGATTTTTGCATTATATATATATATATATATATATATATATATAGTGTGTGTGTGTTTTTGGTTTTTCTCCTTTATAGTCTCTTCTTACAAGACCTTCTATTCCTCTTCCTAAGCCGTGACTTACGGTTTGAACACTTACAAATTAACTAATATATCAATTCAATCATCACAATACTTCCCTACCTCTCAAAATATCATTTCTTTTCAAAAGTTAATTTAACTAATTTTTGAAAAATTATATTGGACAGACTAATATTCAAAAACTACATGAAAAATATTGTAGTATAAGTTATAAATCATAAGTTAATTTGACTAATTTAATATTTGAAGTATAAGTTATAAATCATAAGTTAATTTGACTAATTTAATATTTGAAATTTAAAAGTTAAATATTCAAAATCTTTCTGAAAAGTATTTTAAATTGTGATTCTTCTTTTATCAATATGATACTATTATACCCAATATAATATCAATATGATAATATAACATCAATATGATAATATCAATATTATAATATGGTTCTTCTTATATCAATATGACACTATTGTACCCGATATAATATCAATATGATAATACCATATTCAATTTAATTCCACGAGTGAAGCTAAAAAAAATGAATATTTATCTGACCTTAAATTTTTGATAAATTCTAGATTCAAAAAAATTAATTCTCAAATATTAATATAATAAAAAATACATTTCAAAATATCGAAAACGTCACTAGTGATTTGAGATGAAAGGAGTAATTTGTTAAAAGGATTTACACATTCTTTTTTATAGTTATATACTTGCAACCAAAGTTTAGAGTCCAATTGTTTAAAGATTTCCTTTGGTCTTCTATGTGTCCTTGAATTTCTCTTTCTTCCTAATCAGAATAAATGATAAAGTTTGACTAAATTTATCGAGATTTCATTATTTTTTTAGTCTTATTAAATACTACAACAACAATAACATATAAACTGTATTGATTTACAACGGAGACAGAAAGGTTATTTTTGAAAAAGAAATCAAGCAATCACACCACATCTACCTCCCCTTCCGACCCAAACTATATATGGCTTTTAATTTACCAAGATTCGAAGTTTCAAATTACGTGAATTTTGACCAAAATTTTGAAATTCAGTTTTCTTATCATATTAAAATGCAACTTATAGTAATAATTTTTCATTCAAAAATTAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TGAAATCCCCAATAACCACATATACTCCTCAACACACCCAAATTTGCATTGCATTTCATCAAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAAACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAAAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCNNAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740658" ref_strand="+" ref_description="SGN-E740658 [LC22BE09]">
      <seq>aaacaacaaactcaaaaaatggcatcagctctgttttctgcaccaactttccaaggtctcagacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatctcagaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttactatatgtgtttttgttaactgattttatgtgaaattcatgtggttttgtgccaaagaattactagtactatctctgttttcttttgcatttgaattcgactatgcatccnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannncctggggggggggggggggaccaatttccccctagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="87991" stop="70304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87691" g_stop="87096" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87095" i_stop="84554" i_length="2542">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84553" g_stop="84478" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="672" r_length="76" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E740658" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87691" e_stop="87096"/>
          <exon e_start="84553" e_stop="84478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCAAAAAATTTCGCTGTGATGAATGGTTTCCAATAATGCCACGAGGCAGAGAGCCTTTCAACTGAAATAGATCTAATCGGATTGCTTGGTTCCCATTGCTTCAAAAATGAATTGAAAATAATATCTTAGAAGATGACTATATAAATTATAGCTCCATCACTTCGCGTAGGGATCCGTATGGTAGGATATATTAGAGAAAATAATACTGGTATTATCGAATTCCTTTTTTGATAGTGTTTTCAGAATTTTTAACCAAACTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACGGTAACGTTTTAGGATATATTTTATTTTTTAAAAACTAACAGCATTAGGTTGATATATGTTACTGTAAGTAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACACCTAAAACGTTGCTGTGAGTAACGTTTTAGGAGTAAAACGTTACTGTGAGTAATGTATATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAACATATTATTTTGGTGAATGACTTTATATAATGACTTAGTTTGGTTAAAACCTCGTGTTTTCAATAGTATAACTAGCTAATACATAATCTTACTTGTACGTCTTGTTCAACAGTATTCTTATCAATAATAAATCATGATATTAACAATACAAAACTTTTTCTAAGCTTTTTATTTCTAACATACGTTATTCAATATAATTTTTATACTTCATACCAAGCGATGATGAGAATATATAAAGTAAAAATAATAGTGGGGAATTTTGGAATGACGCTTTCATATATATTATGGTCACGAGAATGTGGGCAGTAAACAGTTGGGACTTAATAATACTTATTTCTTGCCTTTACCATATATTTTTTACCGTTAATTCCCTCCTAAATGTTTCAGAATTATAATCTTTCAGAAAAGGAAAATTAGTCACCATCTTCATTTTCTCTATAGGTGTCATATGAAAAGCTTTTGTAATTTGTTTGTGTATGGCTAATTAATATAAAAAGAATTAATTTAGCCTAGGTTTAAAAAAGTAAATGTATTTTTCAACTTGTAAAAAATAGTTTCTTGTTCTAAATCAAAGTATATATGTATATAGTTTTGCTATGATAAACTAAACTATAGTTTCTACAATAGCTAGTTATGGTAAAATGTTAGCTAGTTATGGTAAAATGTTATATTTAGTTTATCAGTGTAAATACTGGATACATCTAATTTCTGATCCCACGTAGGTAAATATATCAACAAAAAATGATTTTTGCATTATATATATATATATATATATATATATATATAGTGTGTGTGTGTTTTTGGTTTTTCTCCTTTATAGTCTCTTCTTACAAGACCTTCTATTCCTCTTCCTAAGCCGTGACTTACGGTTTGAACACTTACAAATTAACTAATATATCAATTCAATCATCACAATACTTCCCTACCTCTCAAAATATCATTTCTTTTCAAAAGTTAATTTAACTAATTTTTGAAAAATTATATTGGACAGACTAATATTCAAAAACTACATGAAAAATATTGTAGTATAAGTTATAAATCATAAGTTAATTTGACTAATTTAATATTTGAAGTATAAGTTATAAATCATAAGTTAATTTGACTAATTTAATATTTGAAATTTAAAAGTTAAATATTCAAAATCTTTCTGAAAAGTATTTTAAATTGTGATTCTTCTTTTATCAATATGATACTATTATACCCAATATAATATCAATATGATAATATAACATCAATATGATAATATCAATATTATAATATGGTTCTTCTTATATCAATATGACACTATTGTACCCGATATAATATCAATATGATAATACCATATTCAATTTAATTCCACGAGTGAAGCTAAAAAAAATGAATATTTATCTGACCTTAAATTTTTGATAAATTCTAGATTCAAAAAAATTAATTCTCAAATATTAATATAATAAAAAATACATTTCAAAATATCGAAAACGTCACTAGTGATTTGAGATGAAAGGAGTAATTTGTTAAAAGGATTTACACATTCTTTTTTATAGTTATATACTTGCAACCAAAGTTTAGAGTCCAATTGTTTAAAGATTTCCTTTGGTCTTCTATGTGTCCTTGAATTTCTCTTTCTTCCTAATCAGAATAAATGATAAAGTTTGACTAAATTTATCGAGATTTCATTATTTTTTTAGTCTTATTAAATACTACAACAACAATAACATATAAACTGTATTGATTTACAACGGAGACAGAAAGGTTATTTTTGAAAAAGAAATCAAGCAATCACACCACATCTACCTCCCCTTCCGACCCAAACTATATATGGCTTTTAATTTACCAAGATTCGAAGTTTCAAATTACGTGAATTTTGACCAAAATTTTGAAATTCAGTTTTCTTATCATATTAAAATGCAACTTATAGTAATAATTTTTCATTCAAAAATTAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCNANAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNCCTGGGGGGGGGGGGGGGGACCAATTTCCCCCTAGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717631" ref_strand="-" ref_description="SGN-E717631 [FC02BB08]">
      <seq>aaaaatttttccccttttttcccccccttttttggggggcccttaaaaaatttaaagggggcccttttgggggggntttttttttttttttttttttttttttttttttttttttttttttttttttttttttttnnggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattttgagatggcacctgtttcgctacattttctctttggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgataggtttgaaggcgatgggtttgttgaggaagagggaagagtcggtgggtttgttgagaggtttgagaccttggaaagttggtgcagaaaacagagctgatgccattttttgagtttgttgtttgatgaaatgcaatgcaaatttgggtgtgttgaggagtatatgtgggtattggggatttcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70286" stop="88053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84479" g_stop="84590" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.538"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84591" i_stop="86897" i_length="2307">
            <donor d_prob="0.000" d_score="0.54"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86898" g_stop="86913" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="128" r_length="16" r_score="0.625"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86914" i_stop="87148" i_length="235">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87149" g_stop="87754" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="734" r_length="606" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E717631" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717631" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84479" e_stop="84590"/>
          <exon e_start="86898" e_stop="86913"/>
          <exon e_start="87149" e_stop="87754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTAATTTTTGAATGAAAAATTATTACTATAAGTTGCATTTTAATATGATAAGAAAACTGAATTTCAAAATTTTGGTCAAAATTCACGTAATTTGAAACTTCGAATCTTGGTAAATTAAAAGCCATATATAGTTTGGGTCGGAAGGGGAGGTAGATGTGGTGTGATTGCTTGATTTCTTTTTCAAAAATAACCTTTCTGTCTCCGTTGTAAATCAATACAGTTTATATGTTATTGTTGTTGTAGTATTTAATAAGACTAAAAAAATAATGAAATCTCGATAAATTTAGTCAAACTTTATCATTTATTCTGATTAGGAAGAAAGAGAAATTCAAGGACACATAGAAGACCAAAGGAAATCTTTAAACAATTGGACTCTAAACTTTGGTTGCAAGTATATAACTATAAAAAAGAATGTGTAAATCCTTTTAACAAATTACTCCTTTCATCTCAAATCACTAGTGACGTTTTCGATATTTTGAAATGTATTTTTTATTATATTAATATTTGAGAATTAATTTTTTTGAATCTAGAATTTATCAAAAATTTAAGGTCAGATAAATATTCATTTTTTTTAGCTTCACTCGTGGAATTAAATTGAATATGGTATTATCATATTGATATTATATCGGGTACAATAGTGTCATATTGATATAAGAAGAACCATATTATAATATTGATATTATCATATTGATGTTATATTATCATATTGATATTATATTGGGTATAATAGTATCATATTGATAAAAGAAGAATCACAATTTAAAATACTTTTCAGAAAGATTTTGAATATTTAACTTTTAAATTTCAAATATTAAATTAGTCAAATTAACTTATGATTTATAACTTATACTTCAAATATTAAATTAGTCAAATTAACTTATGATTTATAACTTATACTACAATATTTTTCATGTAGTTTTTGAATATTAGTCTGTCCAATATAATTTTTCAAAAATTAGTTAAATTAACTTTTGAAAAGAAATGATATTTTGAGAGGTAGGGAAGTATTGTGATGATTGAATTGATATATTAGTTAATTTGTAAGTGTTCAAACCGTAAGTCACGGCTTAGGAAGAGGAATAGAAGGTCTTGTAAGAAGAGACTATAAAGGAGAAAAACCAAAAACACACACACACTATATATATATATATATATATATATATATATAATGCAAAAATCATTTTTTGTTGATATATTTACCTACGTGGGATCAGAAATTAGATGTATCCAGTATTTACACTGATAAACTAAATATAACATTTTACCATAACTAGCTAACATTTTACCATAACTAGCTATTGTAGAAACTATAGTTTAGTTTATCATAGCAAAACTATATACATATATACTTTGATTTAGAACAAGAAACTATTTTTTACAAGTTGAAAAATACATTTACTTTTTTAAACCTAGGCTAAATTAATTCTTTTTATATTAATTAGCCATACACAAACAAATTACAAAAGCTTTTCATATGACACCTATAGAGAAAATGAAGATGGTGACTAATTTTCCTTTTCTGAAAGATTATAATTCTGAAACATTTAGGAGGGAATTAACGGTAAAAAATATATGGTAAAGGCAAGAAATAAGTATTATTAAGTCCCAACTGTTTACTGCCCACATTCTCGTGACCATAATATATATGAAAGCGTCATTCCAAAATTCCCCACTATTATTTTTACTTTATATATTCTCATCATCGCTTGGTATGAAGTATAAAAATTATATTGAATAACGTATGTTAGAAATAAAAAGCTTAGAAAAAGTTTTGTATTGTTAATATCATGATTTATTATTGATAAGAATACTGTTGAACAAGACGTACAAGTAAGATTATGTATTAGCTAGTTATACTATTGAAAACACGAGGTTTTAACCAAACTAAGTCATTATATAAAGTCATTCACCAAAATAATATGTTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACAGTAACGTTTTAGGATATATTTTATTTTTTAAAAGTTGATGGCGTCAGATTGATATACATTACTCACAGTAACGTTTTACTCCTAAAACGTTACTCACAGCAACGTTTTAGGTGTAAAACGTTACTGAAAATAACGTTTTAAAAGTAAAACGTTACTTACAGTAACATATATCAACCTAATGCTGTTAGTTTTTAAAAAATAAAATATATCCTAAAACGTTACCGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAATGTATTACTTTGGTAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTGAAAACACTATCAAAAAAGGAATTCGATAATACCAGTATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTTGTTTGATGAAATGCAATGCAAATTTGGGTGTGTTGAGGAGTATATGTGGTTATTGGGGATTTCAGTA</genome_strand>
        <mrna_strand>AAAAATTTTTCCCCTTTTTTCCCCCCCTTTTTTGGGGGGCCCTTAAAAAATTTAAAGGGGGCCCTTTTGGGGGGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTT...........................................................................................................................................................................................................................................TTTTTTTNNGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTTTGAGATGGCACCTGTTTCGCTACATTTTCTCTTTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTTTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTTGTTTGATGAAATGCAATGCAAATTTGGGTGTGTTGAGGAGTATATGTGGGTATTGGGGATTTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712137" ref_strand="+" ref_description="SGN-E712137 [FB04AA07]">
      <seq>caataaccacatatactcctcaacacacccaaatttgcattgcatttcatcaaacaacaaactcaaaaaatggcatcagctctgttttctgcaccaactttccaaggtctcagacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatctcagaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttactatatgtgtttttgttaactgattttatgtgaaattcatgtggttttgtgccaaagaattactagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggggggggaagaaaaaaaaataanaaaaaaannggccggggggggggccccaccccccctccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="88042" stop="70274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87742" g_stop="87143" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87142" i_stop="86573" i_length="570">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86572" g_stop="86561" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="612" r_length="12" r_score="0.833"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86560" i_stop="84589" i_length="1972">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84588" g_stop="84496" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="705" r_length="93" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E712137" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87742" e_stop="87143"/>
          <exon e_start="86572" e_stop="86561"/>
          <exon e_start="84588" e_stop="84496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAACCACATATACTCCTCAACACACCCAAATTTGCATTGCATTTCATCAAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCAAAAAATTTCGCTGTGATGAATGGTTTCCAATAATGCCACGAGGCAGAGAGCCTTTCAACTGAAATAGATCTAATCGGATTGCTTGGTTCCCATTGCTTCAAAAATGAATTGAAAATAATATCTTAGAAGATGACTATATAAATTATAGCTCCATCACTTCGCGTAGGGATCCGTATGGTAGGATATATTAGAGAAAATAATACTGGTATTATCGAATTCCTTTTTTGATAGTGTTTTCAGAATTTTTAACCAAACTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACGGTAACGTTTTAGGATATATTTTATTTTTTAAAAACTAACAGCATTAGGTTGATATATGTTACTGTAAGTAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACACCTAAAACGTTGCTGTGAGTAACGTTTTAGGAGTAAAACGTTACTGTGAGTAATGTATATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAACATATTATTTTGGTGAATGACTTTATATAATGACTTAGTTTGGTTAAAACCTCGTGTTTTCAATAGTATAACTAGCTAATACATAATCTTACTTGTACGTCTTGTTCAACAGTATTCTTATCAATAATAAATCATGATATTAACAATACAAAACTTTTTCTAAGCTTTTTATTTCTAACATACGTTATTCAATATAATTTTTATACTTCATACCAAGCGATGATGAGAATATATAAAGTAAAAATAATAGTGGGGAATTTTGGAATGACGCTTTCATATATATTATGGTCACGAGAATGTGGGCAGTAAACAGTTGGGACTTAATAATACTTATTTCTTGCCTTTACCATATATTTTTTACCGTTAATTCCCTCCTAAATGTTTCAGAATTATAATCTTTCAGAAAAGGAAAATTAGTCACCATCTTCATTTTCTCTATAGGTGTCATATGAAAAGCTTTTGTAATTTGTTTGTGTATGGCTAATTAATATAAAAAGAATTAATTTAGCCTAGGTTTAAAAAAGTAAATGTATTTTTCAACTTGTAAAAAATAGTTTCTTGTTCTAAATCAAAGTATATATGTATATAGTTTTGCTATGATAAACTAAACTATAGTTTCTACAATAGCTAGTTATGGTAAAATGTTAGCTAGTTATGGTAAAATGTTATATTTAGTTTATCAGTGTAAATACTGGATACATCTAATTTCTGATCCCACGTAGGTAAATATATCAACAAAAAATGATTTTTGCATTATATATATATATATATATATATATATATATAGTGTGTGTGTGTTTTTGGTTTTTCTCCTTTATAGTCTCTTCTTACAAGACCTTCTATTCCTCTTCCTAAGCCGTGACTTACGGTTTGAACACTTACAAATTAACTAATATATCAATTCAATCATCACAATACTTCCCTACCTCTCAAAATATCATTTCTTTTCAAAAGTTAATTTAACTAATTTTTGAAAAATTATATTGGACAGACTAATATTCAAAAACTACATGAAAAATATTGTAGTATAAGTTATAAATCATAAGTTAATTTGACTAATTTAATATTTGAAGTATAAGTTATAAATCATAAGTTAATTTGACTAATTTAATATTTGAAATTTAAAAGTTAAATATTCAAAATCTTTCTGAAAAGTATTTTAAATTGTGATTCTTCTTTTATCAATATGATACTATTATACCCAATATAATATCAATATGATAATATAACATCAATATGATAATATCAATATTATAATATGGTTCTTCTTATATCAATATGACACTATTGTACCCGATATAATATCAATATGATAATACCATATTCAATTTAATTCCACGAGTGAAGCTAAAAAAAATGAATATTTATCTGACCTTAAATTTTTGATAAATTCTAGATTCAAAAAAATTAATTCTCAAATATTAATATAATAAAAAATACATTTCAAAATATCGAAAACGTCACTAGTGATTTGAGATGAAAGGAGTAATTTGTTAAAAGGATTTACACATTCTTTTTTATAGTTATATACTTGCAACCAAAGTTTAGAGTCCAATTGTTTAAAGATTTCCTTTGGTCTTCTATGTGTCCTTGAATTTCTCTTTCTTCCTAATCAGAATAAATGATAAAGTTTGACTAAATTTATCGAGATTTCATTATTTTTTTAGTCTTATTAAATACTACAACAACAATAACATATAAACTGTATTGATTTACAACGGAGACAGAAAGGTTATTTTTGAAAAAGAAATCAAGCAATCACACCACATCTACCTCCCCTTCCGACCCAAACTATATATGGCTTTTAATTTACCAAGATTCGAAGTTTCAAATTACGTGAATTTTGACCAAAATTTTGAAATTCAGTTTTCTTATCATATTAAAATGCAACTTATAGTAATAATTTTTCATTCAAAAATTAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CAATAACCACATATACTCCTCAACACACCCAAATTTGCATTGCATTTCATCAAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGAAGAAAAAAAAATAANAAAAAAANNGGCCGGGGGGGGGGCCCCACCCCCCCTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738149" ref_strand="-" ref_description="SGN-E738149 [LC12CC08]">
      <seq>ttttttttccccccccccttagggggaaatggggcccccccccccccccccaggntttttttttttttttttttttttttttttttttttttttttntnnggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattctgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgataggtttgaaggcgatgggtttgttgaggaagagggaagagtcggtgggtttgttgagaggtctgagaccttggaaagttggtgcagaaaacagagctgatgccattttttgagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70301" stop="87985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84498" g_stop="84588" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.636"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84589" i_stop="87148" i_length="2560">
            <donor d_prob="0.000" d_score="0.64"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87149" g_stop="87685" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="628" r_length="537" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E738149" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738149" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84498" e_stop="84588"/>
          <exon e_start="87149" e_stop="87685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTAATTTTTGAATGAAAAATTATTACTATAAGTTGCATTTTAATATGATAAGAAAACTGAATTTCAAAATTTTGGTCAAAATTCACGTAATTTGAAACTTCGAATCTTGGTAAATTAAAAGCCATATATAGTTTGGGTCGGAAGGGGAGGTAGATGTGGTGTGATTGCTTGATTTCTTTTTCAAAAATAACCTTTCTGTCTCCGTTGTAAATCAATACAGTTTATATGTTATTGTTGTTGTAGTATTTAATAAGACTAAAAAAATAATGAAATCTCGATAAATTTAGTCAAACTTTATCATTTATTCTGATTAGGAAGAAAGAGAAATTCAAGGACACATAGAAGACCAAAGGAAATCTTTAAACAATTGGACTCTAAACTTTGGTTGCAAGTATATAACTATAAAAAAGAATGTGTAAATCCTTTTAACAAATTACTCCTTTCATCTCAAATCACTAGTGACGTTTTCGATATTTTGAAATGTATTTTTTATTATATTAATATTTGAGAATTAATTTTTTTGAATCTAGAATTTATCAAAAATTTAAGGTCAGATAAATATTCATTTTTTTTAGCTTCACTCGTGGAATTAAATTGAATATGGTATTATCATATTGATATTATATCGGGTACAATAGTGTCATATTGATATAAGAAGAACCATATTATAATATTGATATTATCATATTGATGTTATATTATCATATTGATATTATATTGGGTATAATAGTATCATATTGATAAAAGAAGAATCACAATTTAAAATACTTTTCAGAAAGATTTTGAATATTTAACTTTTAAATTTCAAATATTAAATTAGTCAAATTAACTTATGATTTATAACTTATACTTCAAATATTAAATTAGTCAAATTAACTTATGATTTATAACTTATACTACAATATTTTTCATGTAGTTTTTGAATATTAGTCTGTCCAATATAATTTTTCAAAAATTAGTTAAATTAACTTTTGAAAAGAAATGATATTTTGAGAGGTAGGGAAGTATTGTGATGATTGAATTGATATATTAGTTAATTTGTAAGTGTTCAAACCGTAAGTCACGGCTTAGGAAGAGGAATAGAAGGTCTTGTAAGAAGAGACTATAAAGGAGAAAAACCAAAAACACACACACACTATATATATATATATATATATATATATATATAATGCAAAAATCATTTTTTGTTGATATATTTACCTACGTGGGATCAGAAATTAGATGTATCCAGTATTTACACTGATAAACTAAATATAACATTTTACCATAACTAGCTAACATTTTACCATAACTAGCTATTGTAGAAACTATAGTTTAGTTTATCATAGCAAAACTATATACATATATACTTTGATTTAGAACAAGAAACTATTTTTTACAAGTTGAAAAATACATTTACTTTTTTAAACCTAGGCTAAATTAATTCTTTTTATATTAATTAGCCATACACAAACAAATTACAAAAGCTTTTCATATGACACCTATAGAGAAAATGAAGATGGTGACTAATTTTCCTTTTCTGAAAGATTATAATTCTGAAACATTTAGGAGGGAATTAACGGTAAAAAATATATGGTAAAGGCAAGAAATAAGTATTATTAAGTCCCAACTGTTTACTGCCCACATTCTCGTGACCATAATATATATGAAAGCGTCATTCCAAAATTCCCCACTATTATTTTTACTTTATATATTCTCATCATCGCTTGGTATGAAGTATAAAAATTATATTGAATAACGTATGTTAGAAATAAAAAGCTTAGAAAAAGTTTTGTATTGTTAATATCATGATTTATTATTGATAAGAATACTGTTGAACAAGACGTACAAGTAAGATTATGTATTAGCTAGTTATACTATTGAAAACACGAGGTTTTAACCAAACTAAGTCATTATATAAAGTCATTCACCAAAATAATATGTTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACAGTAACGTTTTAGGATATATTTTATTTTTTAAAAGTTGATGGCGTCAGATTGATATACATTACTCACAGTAACGTTTTACTCCTAAAACGTTACTCACAGCAACGTTTTAGGTGTAAAACGTTACTGAAAATAACGTTTTAAAAGTAAAACGTTACTTACAGTAACATATATCAACCTAATGCTGTTAGTTTTTAAAAAATAAAATATATCCTAAAACGTTACCGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAATGTATTACTTTGGTAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTGAAAACACTATCAAAAAAGGAATTCGATAATACCAGTATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTG</genome_strand>
        <mrna_strand>TTTTTTTTCCCCCCCCCCTTAGGGGGAAATGGGGCCCCCCCCCCCCCCCCCAGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTNTNNGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737267" ref_strand="+" ref_description="SGN-E737267 [LC09AD01]">
      <seq>aaacaacaaactcaaaaaatggcatcagctctgttttctgcaccaactttccaaggtctcagacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatctcagaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttactatatgtgtttttgttaactgattttatgtgaaattcatgtggttttgtgccaaagaattactagtactatctctgttttcttttgcatttgaattcgactatgcatccnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccggggggggggggggggaacccatttcccccaaaaggggggggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="87991" stop="70289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87691" g_stop="87096" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87095" i_stop="84589" i_length="2507">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84588" g_stop="84501" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="684" r_length="88" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E737267" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87691" e_stop="87096"/>
          <exon e_start="84588" e_stop="84501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCAAAAAATTTCGCTGTGATGAATGGTTTCCAATAATGCCACGAGGCAGAGAGCCTTTCAACTGAAATAGATCTAATCGGATTGCTTGGTTCCCATTGCTTCAAAAATGAATTGAAAATAATATCTTAGAAGATGACTATATAAATTATAGCTCCATCACTTCGCGTAGGGATCCGTATGGTAGGATATATTAGAGAAAATAATACTGGTATTATCGAATTCCTTTTTTGATAGTGTTTTCAGAATTTTTAACCAAACTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACGGTAACGTTTTAGGATATATTTTATTTTTTAAAAACTAACAGCATTAGGTTGATATATGTTACTGTAAGTAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACACCTAAAACGTTGCTGTGAGTAACGTTTTAGGAGTAAAACGTTACTGTGAGTAATGTATATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAACATATTATTTTGGTGAATGACTTTATATAATGACTTAGTTTGGTTAAAACCTCGTGTTTTCAATAGTATAACTAGCTAATACATAATCTTACTTGTACGTCTTGTTCAACAGTATTCTTATCAATAATAAATCATGATATTAACAATACAAAACTTTTTCTAAGCTTTTTATTTCTAACATACGTTATTCAATATAATTTTTATACTTCATACCAAGCGATGATGAGAATATATAAAGTAAAAATAATAGTGGGGAATTTTGGAATGACGCTTTCATATATATTATGGTCACGAGAATGTGGGCAGTAAACAGTTGGGACTTAATAATACTTATTTCTTGCCTTTACCATATATTTTTTACCGTTAATTCCCTCCTAAATGTTTCAGAATTATAATCTTTCAGAAAAGGAAAATTAGTCACCATCTTCATTTTCTCTATAGGTGTCATATGAAAAGCTTTTGTAATTTGTTTGTGTATGGCTAATTAATATAAAAAGAATTAATTTAGCCTAGGTTTAAAAAAGTAAATGTATTTTTCAACTTGTAAAAAATAGTTTCTTGTTCTAAATCAAAGTATATATGTATATAGTTTTGCTATGATAAACTAAACTATAGTTTCTACAATAGCTAGTTATGGTAAAATGTTAGCTAGTTATGGTAAAATGTTATATTTAGTTTATCAGTGTAAATACTGGATACATCTAATTTCTGATCCCACGTAGGTAAATATATCAACAAAAAATGATTTTTGCATTATATATATATATATATATATATATATATATAGTGTGTGTGTGTTTTTGGTTTTTCTCCTTTATAGTCTCTTCTTACAAGACCTTCTATTCCTCTTCCTAAGCCGTGACTTACGGTTTGAACACTTACAAATTAACTAATATATCAATTCAATCATCACAATACTTCCCTACCTCTCAAAATATCATTTCTTTTCAAAAGTTAATTTAACTAATTTTTGAAAAATTATATTGGACAGACTAATATTCAAAAACTACATGAAAAATATTGTAGTATAAGTTATAAATCATAAGTTAATTTGACTAATTTAATATTTGAAGTATAAGTTATAAATCATAAGTTAATTTGACTAATTTAATATTTGAAATTTAAAAGTTAAATATTCAAAATCTTTCTGAAAAGTATTTTAAATTGTGATTCTTCTTTTATCAATATGATACTATTATACCCAATATAATATCAATATGATAATATAACATCAATATGATAATATCAATATTATAATATGGTTCTTCTTATATCAATATGACACTATTGTACCCGATATAATATCAATATGATAATACCATATTCAATTTAATTCCACGAGTGAAGCTAAAAAAAATGAATATTTATCTGACCTTAAATTTTTGATAAATTCTAGATTCAAAAAAATTAATTCTCAAATATTAATATAATAAAAAATACATTTCAAAATATCGAAAACGTCACTAGTGATTTGAGATGAAAGGAGTAATTTGTTAAAAGGATTTACACATTCTTTTTTATAGTTATATACTTGCAACCAAAGTTTAGAGTCCAATTGTTTAAAGATTTCCTTTGGTCTTCTATGTGTCCTTGAATTTCTCTTTCTTCCTAATCAGAATAAATGATAAAGTTTGACTAAATTTATCGAGATTTCATTATTTTTTTAGTCTTATTAAATACTACAACAACAATAACATATAAACTGTATTGATTTACAACGGAGACAGAAAGGTTATTTTTGAAAAAGAAATCAAGCAATCACACCACATCTACCTCCCCTTCCGACCCAAACTATATATGGCTTTTAATTTACCAAGATTCGAAGTTTCAAATTACGTGAATTTTGACCAAAATTTTGAAATTCAGTTTTCTTATCATATTAAAATGCAACTTATAGTAATAATTTTTCATTCAAAAATTAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCNNNAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGGGGGGGGGGGGGGGGAACCCATTTCCCCCAAAAGGGGGGGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732195" ref_strand="+" ref_description="SGN-E732195 [LB01CB04]">
      <seq>caatctcaaaaaatggcatcagctctgttttctgcaccaactttccaaggtctcagacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatctcagaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttactatatgtgtttttgttaactgattttatgtgaaattcatgtggttttgtgccanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaantccggggggggggggggggcccccctccccccctaagggggggggaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="87985" stop="70289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87685" g_stop="87153" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87152" i_stop="86573" i_length="580">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86572" g_stop="86561" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="545" r_length="12" r_score="0.833"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86560" i_stop="84589" i_length="1972">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84588" g_stop="84501" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="633" r_length="88" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E732195" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87685" e_stop="87153"/>
          <exon e_start="86572" e_stop="86561"/>
          <exon e_start="84588" e_stop="84501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCAAAAAATTTCGCTGTGATGAATGGTTTCCAATAATGCCACGAGGCAGAGAGCCTTTCAACTGAAATAGATCTAATCGGATTGCTTGGTTCCCATTGCTTCAAAAATGAATTGAAAATAATATCTTAGAAGATGACTATATAAATTATAGCTCCATCACTTCGCGTAGGGATCCGTATGGTAGGATATATTAGAGAAAATAATACTGGTATTATCGAATTCCTTTTTTGATAGTGTTTTCAGAATTTTTAACCAAACTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACGGTAACGTTTTAGGATATATTTTATTTTTTAAAAACTAACAGCATTAGGTTGATATATGTTACTGTAAGTAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACACCTAAAACGTTGCTGTGAGTAACGTTTTAGGAGTAAAACGTTACTGTGAGTAATGTATATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAACATATTATTTTGGTGAATGACTTTATATAATGACTTAGTTTGGTTAAAACCTCGTGTTTTCAATAGTATAACTAGCTAATACATAATCTTACTTGTACGTCTTGTTCAACAGTATTCTTATCAATAATAAATCATGATATTAACAATACAAAACTTTTTCTAAGCTTTTTATTTCTAACATACGTTATTCAATATAATTTTTATACTTCATACCAAGCGATGATGAGAATATATAAAGTAAAAATAATAGTGGGGAATTTTGGAATGACGCTTTCATATATATTATGGTCACGAGAATGTGGGCAGTAAACAGTTGGGACTTAATAATACTTATTTCTTGCCTTTACCATATATTTTTTACCGTTAATTCCCTCCTAAATGTTTCAGAATTATAATCTTTCAGAAAAGGAAAATTAGTCACCATCTTCATTTTCTCTATAGGTGTCATATGAAAAGCTTTTGTAATTTGTTTGTGTATGGCTAATTAATATAAAAAGAATTAATTTAGCCTAGGTTTAAAAAAGTAAATGTATTTTTCAACTTGTAAAAAATAGTTTCTTGTTCTAAATCAAAGTATATATGTATATAGTTTTGCTATGATAAACTAAACTATAGTTTCTACAATAGCTAGTTATGGTAAAATGTTAGCTAGTTATGGTAAAATGTTATATTTAGTTTATCAGTGTAAATACTGGATACATCTAATTTCTGATCCCACGTAGGTAAATATATCAACAAAAAATGATTTTTGCATTATATATATATATATATATATATATATATATAGTGTGTGTGTGTTTTTGGTTTTTCTCCTTTATAGTCTCTTCTTACAAGACCTTCTATTCCTCTTCCTAAGCCGTGACTTACGGTTTGAACACTTACAAATTAACTAATATATCAATTCAATCATCACAATACTTCCCTACCTCTCAAAATATCATTTCTTTTCAAAAGTTAATTTAACTAATTTTTGAAAAATTATATTGGACAGACTAATATTCAAAAACTACATGAAAAATATTGTAGTATAAGTTATAAATCATAAGTTAATTTGACTAATTTAATATTTGAAGTATAAGTTATAAATCATAAGTTAATTTGACTAATTTAATATTTGAAATTTAAAAGTTAAATATTCAAAATCTTTCTGAAAAGTATTTTAAATTGTGATTCTTCTTTTATCAATATGATACTATTATACCCAATATAATATCAATATGATAATATAACATCAATATGATAATATCAATATTATAATATGGTTCTTCTTATATCAATATGACACTATTGTACCCGATATAATATCAATATGATAATACCATATTCAATTTAATTCCACGAGTGAAGCTAAAAAAAATGAATATTTATCTGACCTTAAATTTTTGATAAATTCTAGATTCAAAAAAATTAATTCTCAAATATTAATATAATAAAAAATACATTTCAAAATATCGAAAACGTCACTAGTGATTTGAGATGAAAGGAGTAATTTGTTAAAAGGATTTACACATTCTTTTTTATAGTTATATACTTGCAACCAAAGTTTAGAGTCCAATTGTTTAAAGATTTCCTTTGGTCTTCTATGTGTCCTTGAATTTCTCTTTCTTCCTAATCAGAATAAATGATAAAGTTTGACTAAATTTATCGAGATTTCATTATTTTTTTAGTCTTATTAAATACTACAACAACAATAACATATAAACTGTATTGATTTACAACGGAGACAGAAAGGTTATTTTTGAAAAAGAAATCAAGCAATCACACCACATCTACCTCCCCTTCCGACCCAAACTATATATGGCTTTTAATTTACCAAGATTCGAAGTTTCAAATTACGTGAATTTTGACCAAAATTTTGAAATTCAGTTTTCTTATCATATTAAAATGCAACTTATAGTAATAATTTTTCATTCAAAAATTAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CAATCTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCANAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANTCCGGGGGGGGGGGGGGGGCCCCCCTCCCCCCCTAAGGGGGGGGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734048" ref_strand="-" ref_description="SGN-E734048 [LB11CE12]">
      <seq>ttttttttcccccccttttgggggaaatgggtccccccccccccccccgggttttttttttttttttttttttttttttttttttttttttttctttggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattctgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgataggtttgaaggcgatgggtttgttgaggaagagggaagagtcggtgggtttgttgagaggtctgagaccttggaaagttggtgcagaaaacagagctgatgccattttttgagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70301" stop="87985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84501" g_stop="84588" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.636"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84589" i_stop="87148" i_length="2560">
            <donor d_prob="0.000" d_score="0.64"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87149" g_stop="87685" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="625" r_length="537" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E734048" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734048" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84501" e_stop="84588"/>
          <exon e_start="87149" e_stop="87685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTAATTTTTGAATGAAAAATTATTACTATAAGTTGCATTTTAATATGATAAGAAAACTGAATTTCAAAATTTTGGTCAAAATTCACGTAATTTGAAACTTCGAATCTTGGTAAATTAAAAGCCATATATAGTTTGGGTCGGAAGGGGAGGTAGATGTGGTGTGATTGCTTGATTTCTTTTTCAAAAATAACCTTTCTGTCTCCGTTGTAAATCAATACAGTTTATATGTTATTGTTGTTGTAGTATTTAATAAGACTAAAAAAATAATGAAATCTCGATAAATTTAGTCAAACTTTATCATTTATTCTGATTAGGAAGAAAGAGAAATTCAAGGACACATAGAAGACCAAAGGAAATCTTTAAACAATTGGACTCTAAACTTTGGTTGCAAGTATATAACTATAAAAAAGAATGTGTAAATCCTTTTAACAAATTACTCCTTTCATCTCAAATCACTAGTGACGTTTTCGATATTTTGAAATGTATTTTTTATTATATTAATATTTGAGAATTAATTTTTTTGAATCTAGAATTTATCAAAAATTTAAGGTCAGATAAATATTCATTTTTTTTAGCTTCACTCGTGGAATTAAATTGAATATGGTATTATCATATTGATATTATATCGGGTACAATAGTGTCATATTGATATAAGAAGAACCATATTATAATATTGATATTATCATATTGATGTTATATTATCATATTGATATTATATTGGGTATAATAGTATCATATTGATAAAAGAAGAATCACAATTTAAAATACTTTTCAGAAAGATTTTGAATATTTAACTTTTAAATTTCAAATATTAAATTAGTCAAATTAACTTATGATTTATAACTTATACTTCAAATATTAAATTAGTCAAATTAACTTATGATTTATAACTTATACTACAATATTTTTCATGTAGTTTTTGAATATTAGTCTGTCCAATATAATTTTTCAAAAATTAGTTAAATTAACTTTTGAAAAGAAATGATATTTTGAGAGGTAGGGAAGTATTGTGATGATTGAATTGATATATTAGTTAATTTGTAAGTGTTCAAACCGTAAGTCACGGCTTAGGAAGAGGAATAGAAGGTCTTGTAAGAAGAGACTATAAAGGAGAAAAACCAAAAACACACACACACTATATATATATATATATATATATATATATATAATGCAAAAATCATTTTTTGTTGATATATTTACCTACGTGGGATCAGAAATTAGATGTATCCAGTATTTACACTGATAAACTAAATATAACATTTTACCATAACTAGCTAACATTTTACCATAACTAGCTATTGTAGAAACTATAGTTTAGTTTATCATAGCAAAACTATATACATATATACTTTGATTTAGAACAAGAAACTATTTTTTACAAGTTGAAAAATACATTTACTTTTTTAAACCTAGGCTAAATTAATTCTTTTTATATTAATTAGCCATACACAAACAAATTACAAAAGCTTTTCATATGACACCTATAGAGAAAATGAAGATGGTGACTAATTTTCCTTTTCTGAAAGATTATAATTCTGAAACATTTAGGAGGGAATTAACGGTAAAAAATATATGGTAAAGGCAAGAAATAAGTATTATTAAGTCCCAACTGTTTACTGCCCACATTCTCGTGACCATAATATATATGAAAGCGTCATTCCAAAATTCCCCACTATTATTTTTACTTTATATATTCTCATCATCGCTTGGTATGAAGTATAAAAATTATATTGAATAACGTATGTTAGAAATAAAAAGCTTAGAAAAAGTTTTGTATTGTTAATATCATGATTTATTATTGATAAGAATACTGTTGAACAAGACGTACAAGTAAGATTATGTATTAGCTAGTTATACTATTGAAAACACGAGGTTTTAACCAAACTAAGTCATTATATAAAGTCATTCACCAAAATAATATGTTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACAGTAACGTTTTAGGATATATTTTATTTTTTAAAAGTTGATGGCGTCAGATTGATATACATTACTCACAGTAACGTTTTACTCCTAAAACGTTACTCACAGCAACGTTTTAGGTGTAAAACGTTACTGAAAATAACGTTTTAAAAGTAAAACGTTACTTACAGTAACATATATCAACCTAATGCTGTTAGTTTTTAAAAAATAAAATATATCCTAAAACGTTACCGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAATGTATTACTTTGGTAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTGAAAACACTATCAAAAAAGGAATTCGATAATACCAGTATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTG</genome_strand>
        <mrna_strand>TTTTTTTTCCCCCCCTTTTGGGGGAAATGGGTCCCCCCCCCCCCCCCCGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735476" ref_strand="-" ref_description="SGN-E735476 [LC01DA08]">
      <seq>tccccccccccccccccagaattttttttttttttttttttttttttttttttttttttttttttttttttttctttggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattctgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgatgggtttgaaggcgatgggtttgttgaggaagagggaagagtcggtgggtttgttgagaggtctgagaccttggaaagttggtgcagaaaacagagctgatgccattttttgagtttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70273" stop="87987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84511" g_stop="84578" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84579" i_stop="87148" i_length="2570">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87149" g_stop="87687" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="607" r_length="539" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E735476" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735476" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84511" e_stop="84578"/>
          <exon e_start="87149" e_stop="87687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTAATTTTTGAATGAAAAATTATTACTATAAGTTGCATTTTAATATGATAAGAAAACTGAATTTCAAAATTTTGGTCAAAATTCACGTAATTTGAAACTTCGAATCTTGGTAAATTAAAAGCCATATATAGTTTGGGTCGGAAGGGGAGGTAGATGTGGTGTGATTGCTTGATTTCTTTTTCAAAAATAACCTTTCTGTCTCCGTTGTAAATCAATACAGTTTATATGTTATTGTTGTTGTAGTATTTAATAAGACTAAAAAAATAATGAAATCTCGATAAATTTAGTCAAACTTTATCATTTATTCTGATTAGGAAGAAAGAGAAATTCAAGGACACATAGAAGACCAAAGGAAATCTTTAAACAATTGGACTCTAAACTTTGGTTGCAAGTATATAACTATAAAAAAGAATGTGTAAATCCTTTTAACAAATTACTCCTTTCATCTCAAATCACTAGTGACGTTTTCGATATTTTGAAATGTATTTTTTATTATATTAATATTTGAGAATTAATTTTTTTGAATCTAGAATTTATCAAAAATTTAAGGTCAGATAAATATTCATTTTTTTTAGCTTCACTCGTGGAATTAAATTGAATATGGTATTATCATATTGATATTATATCGGGTACAATAGTGTCATATTGATATAAGAAGAACCATATTATAATATTGATATTATCATATTGATGTTATATTATCATATTGATATTATATTGGGTATAATAGTATCATATTGATAAAAGAAGAATCACAATTTAAAATACTTTTCAGAAAGATTTTGAATATTTAACTTTTAAATTTCAAATATTAAATTAGTCAAATTAACTTATGATTTATAACTTATACTTCAAATATTAAATTAGTCAAATTAACTTATGATTTATAACTTATACTACAATATTTTTCATGTAGTTTTTGAATATTAGTCTGTCCAATATAATTTTTCAAAAATTAGTTAAATTAACTTTTGAAAAGAAATGATATTTTGAGAGGTAGGGAAGTATTGTGATGATTGAATTGATATATTAGTTAATTTGTAAGTGTTCAAACCGTAAGTCACGGCTTAGGAAGAGGAATAGAAGGTCTTGTAAGAAGAGACTATAAAGGAGAAAAACCAAAAACACACACACACTATATATATATATATATATATATATATATATAATGCAAAAATCATTTTTTGTTGATATATTTACCTACGTGGGATCAGAAATTAGATGTATCCAGTATTTACACTGATAAACTAAATATAACATTTTACCATAACTAGCTAACATTTTACCATAACTAGCTATTGTAGAAACTATAGTTTAGTTTATCATAGCAAAACTATATACATATATACTTTGATTTAGAACAAGAAACTATTTTTTACAAGTTGAAAAATACATTTACTTTTTTAAACCTAGGCTAAATTAATTCTTTTTATATTAATTAGCCATACACAAACAAATTACAAAAGCTTTTCATATGACACCTATAGAGAAAATGAAGATGGTGACTAATTTTCCTTTTCTGAAAGATTATAATTCTGAAACATTTAGGAGGGAATTAACGGTAAAAAATATATGGTAAAGGCAAGAAATAAGTATTATTAAGTCCCAACTGTTTACTGCCCACATTCTCGTGACCATAATATATATGAAAGCGTCATTCCAAAATTCCCCACTATTATTTTTACTTTATATATTCTCATCATCGCTTGGTATGAAGTATAAAAATTATATTGAATAACGTATGTTAGAAATAAAAAGCTTAGAAAAAGTTTTGTATTGTTAATATCATGATTTATTATTGATAAGAATACTGTTGAACAAGACGTACAAGTAAGATTATGTATTAGCTAGTTATACTATTGAAAACACGAGGTTTTAACCAAACTAAGTCATTATATAAAGTCATTCACCAAAATAATATGTTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACAGTAACGTTTTAGGATATATTTTATTTTTTAAAAGTTGATGGCGTCAGATTGATATACATTACTCACAGTAACGTTTTACTCCTAAAACGTTACTCACAGCAACGTTTTAGGTGTAAAACGTTACTGAAAATAACGTTTTAAAAGTAAAACGTTACTTACAGTAACATATATCAACCTAATGCTGTTAGTTTTTAAAAAATAAAATATATCCTAAAACGTTACCGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAATGTATTACTTTGGTAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTGAAAACACTATCAAAAAAGGAATTCGATAATACCAGTATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTT</genome_strand>
        <mrna_strand>TCCCCCCCCCCCCCCCCAGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATGGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735722" ref_strand="-" ref_description="SGN-E735722 [LC02DA08]">
      <seq>ccccccccccccccgaattttttttttttttttttttttttttttttttttttttttttttttttttttctttggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattctgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgataggtttgaaggcgatgggtttgttgaggaagagggaagagtcggtgggtttgttgagaggtctgagaccttggaaagttggtgcagaaaacagagctgatgccattttttgagtttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70285" stop="87984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84515" g_stop="84578" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84579" i_stop="87148" i_length="2570">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87149" g_stop="87687" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="603" r_length="539" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E735722" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735722" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84515" e_stop="84578"/>
          <exon e_start="87149" e_stop="87687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTAATTTTTGAATGAAAAATTATTACTATAAGTTGCATTTTAATATGATAAGAAAACTGAATTTCAAAATTTTGGTCAAAATTCACGTAATTTGAAACTTCGAATCTTGGTAAATTAAAAGCCATATATAGTTTGGGTCGGAAGGGGAGGTAGATGTGGTGTGATTGCTTGATTTCTTTTTCAAAAATAACCTTTCTGTCTCCGTTGTAAATCAATACAGTTTATATGTTATTGTTGTTGTAGTATTTAATAAGACTAAAAAAATAATGAAATCTCGATAAATTTAGTCAAACTTTATCATTTATTCTGATTAGGAAGAAAGAGAAATTCAAGGACACATAGAAGACCAAAGGAAATCTTTAAACAATTGGACTCTAAACTTTGGTTGCAAGTATATAACTATAAAAAAGAATGTGTAAATCCTTTTAACAAATTACTCCTTTCATCTCAAATCACTAGTGACGTTTTCGATATTTTGAAATGTATTTTTTATTATATTAATATTTGAGAATTAATTTTTTTGAATCTAGAATTTATCAAAAATTTAAGGTCAGATAAATATTCATTTTTTTTAGCTTCACTCGTGGAATTAAATTGAATATGGTATTATCATATTGATATTATATCGGGTACAATAGTGTCATATTGATATAAGAAGAACCATATTATAATATTGATATTATCATATTGATGTTATATTATCATATTGATATTATATTGGGTATAATAGTATCATATTGATAAAAGAAGAATCACAATTTAAAATACTTTTCAGAAAGATTTTGAATATTTAACTTTTAAATTTCAAATATTAAATTAGTCAAATTAACTTATGATTTATAACTTATACTTCAAATATTAAATTAGTCAAATTAACTTATGATTTATAACTTATACTACAATATTTTTCATGTAGTTTTTGAATATTAGTCTGTCCAATATAATTTTTCAAAAATTAGTTAAATTAACTTTTGAAAAGAAATGATATTTTGAGAGGTAGGGAAGTATTGTGATGATTGAATTGATATATTAGTTAATTTGTAAGTGTTCAAACCGTAAGTCACGGCTTAGGAAGAGGAATAGAAGGTCTTGTAAGAAGAGACTATAAAGGAGAAAAACCAAAAACACACACACACTATATATATATATATATATATATATATATATAATGCAAAAATCATTTTTTGTTGATATATTTACCTACGTGGGATCAGAAATTAGATGTATCCAGTATTTACACTGATAAACTAAATATAACATTTTACCATAACTAGCTAACATTTTACCATAACTAGCTATTGTAGAAACTATAGTTTAGTTTATCATAGCAAAACTATATACATATATACTTTGATTTAGAACAAGAAACTATTTTTTACAAGTTGAAAAATACATTTACTTTTTTAAACCTAGGCTAAATTAATTCTTTTTATATTAATTAGCCATACACAAACAAATTACAAAAGCTTTTCATATGACACCTATAGAGAAAATGAAGATGGTGACTAATTTTCCTTTTCTGAAAGATTATAATTCTGAAACATTTAGGAGGGAATTAACGGTAAAAAATATATGGTAAAGGCAAGAAATAAGTATTATTAAGTCCCAACTGTTTACTGCCCACATTCTCGTGACCATAATATATATGAAAGCGTCATTCCAAAATTCCCCACTATTATTTTTACTTTATATATTCTCATCATCGCTTGGTATGAAGTATAAAAATTATATTGAATAACGTATGTTAGAAATAAAAAGCTTAGAAAAAGTTTTGTATTGTTAATATCATGATTTATTATTGATAAGAATACTGTTGAACAAGACGTACAAGTAAGATTATGTATTAGCTAGTTATACTATTGAAAACACGAGGTTTTAACCAAACTAAGTCATTATATAAAGTCATTCACCAAAATAATATGTTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACAGTAACGTTTTAGGATATATTTTATTTTTTAAAAGTTGATGGCGTCAGATTGATATACATTACTCACAGTAACGTTTTACTCCTAAAACGTTACTCACAGCAACGTTTTAGGTGTAAAACGTTACTGAAAATAACGTTTTAAAAGTAAAACGTTACTTACAGTAACATATATCAACCTAATGCTGTTAGTTTTTAAAAAATAAAATATATCCTAAAACGTTACCGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAATGTATTACTTTGGTAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTGAAAACACTATCAAAAAAGGAATTCGATAATACCAGTATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTT</genome_strand>
        <mrna_strand>CCCCCCCCCCCCCCGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717807" ref_strand="-" ref_description="SGN-E717807 [FC02DB11]">
      <seq>tttttttttttttttttttttttttttttttttttttttttttttttttntggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattttgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgataggtttgaaggcgatgggtttgttgaggaagagggaagagtcggtgggtttgttgagaggtctgagaccttggaaagttggtgcagaaaacagagctgatgccattttttgagtttgttgtttgatgaaatgcaatgcaaatttgggtgtgttgaggagtatatgtggttcaattcggccgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70297" stop="88044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86253" g_stop="86288" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.556"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86289" i_stop="87142" i_length="854">
            <donor d_prob="0.150" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87143" g_stop="87738" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="632" r_length="596" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E717807" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717807" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86253" e_stop="86288"/>
          <exon e_start="87143" e_stop="87738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTTTTACTTTATATATTCTCATCATCGCTTGGTATGAAGTATAAAAATTATATTGAATAACGTATGTTAGAAATAAAAAGCTTAGAAAAAGTTTTGTATTGTTAATATCATGATTTATTATTGATAAGAATACTGTTGAACAAGACGTACAAGTAAGATTATGTATTAGCTAGTTATACTATTGAAAACACGAGGTTTTAACCAAACTAAGTCATTATATAAAGTCATTCACCAAAATAATATGTTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACAGTAACGTTTTAGGATATATTTTATTTTTTAAAAGTTGATGGCGTCAGATTGATATACATTACTCACAGTAACGTTTTACTCCTAAAACGTTACTCACAGCAACGTTTTAGGTGTAAAACGTTACTGAAAATAACGTTTTAAAAGTAAAACGTTACTTACAGTAACATATATCAACCTAATGCTGTTAGTTTTTAAAAAATAAAATATATCCTAAAACGTTACCGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAATGTATTACTTTGGTAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTGAAAACACTATCAAAAAAGGAATTCGATAATACCAGTATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTTGTTTGATGAAATGCAATGCAAATTTGGGTGTGTTGAGGAGTATATGTGGTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTNTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTTTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTTGTTTGATGAAATGCAATGCAAATTTGGGTGTGTTGAGGAGTATATGTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732434" ref_strand="-" ref_description="SGN-E732434 [LB02AF08]">
      <seq>ttttttttttttttttttttttttttttctnnggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattctgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgataggtttgaaggcgatgggtttgttgaggaagagggaagagtcggtgggtttgttgagaggtctgagaccttggaaagttggtgcagaaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70303" stop="87961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86897" g_stop="86913" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.588"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86914" i_stop="87142" i_length="229">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87143" g_stop="87661" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="536" r_length="519" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E732434" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732434" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86897" e_stop="86913"/>
          <exon e_start="87143" e_stop="87661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTT.....................................................................................................................................................................................................................................TTTTTTTTTTTCTNNGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221023" ref_strand="-" ref_description="SGN-E221023 [cLEL-22-K16](-)">
      <seq>tttttttttttttttttatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattctgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgataggtttgaaggcgatgggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70306" stop="87889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86898" g_stop="86913" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86914" i_stop="87205" i_length="292">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87206" g_stop="87589" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="400" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E221023" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221023" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86898" e_stop="86913"/>
          <exon e_start="87206" e_stop="87589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT....................................................................................................................................................................................................................................................................................................TATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220870" ref_strand="-" ref_description="SGN-E220870 [cLEL-22-K16](-)">
      <seq>tttttttttttttttttatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattctgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagattcggggttttttggtgataggtttgaaggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70306" stop="87881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86898" g_stop="86913" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86914" i_stop="87205" i_length="292">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87206" g_stop="87581" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="391" r_length="375" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E220870" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220870" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86898" e_stop="86913"/>
          <exon e_start="87206" e_stop="87581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT....................................................................................................................................................................................................................................................................................................TATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGA-TTCGGGGTTTTTTGGTGATAGGTTTGAAGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734069" ref_strand="-" ref_description="SGN-E734069 [LB11CG10]">
      <seq>ttttttttttttttttactagtaattctttggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattctgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgataggtttgaaggcgatgggtttgttgaggaagagggaagagtcggtgggtttgttgagaggtctgagaccttggaaagttggtgcagaaaacagagctgatgccattttttgagttagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70309" stop="87987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86899" g_stop="86913" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86914" i_stop="87142" i_length="229">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87143" g_stop="87687" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="560" r_length="545" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E734069" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734069" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86899" e_stop="86913"/>
          <exon e_start="87143" e_stop="87687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTT.....................................................................................................................................................................................................................................TACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740988" ref_strand="-" ref_description="SGN-E740988 [LC23DA11]">
      <seq>ttttttttttttttttactagtaattctttggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattctgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgataggtttgaaggcgatgggtttgttgaggaagagggaagagtcggtgggtttgttgagaggtctgagaccttggaaagttggtgcagaaaacagagctgatgccattttttgagtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70309" stop="87984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86899" g_stop="86913" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86914" i_stop="87142" i_length="229">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87143" g_stop="87685" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="558" r_length="543" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E740988" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740988" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86899" e_stop="86913"/>
          <exon e_start="87143" e_stop="87685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTT.....................................................................................................................................................................................................................................TACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738530" ref_strand="-" ref_description="SGN-E738530 [LC14AB01]">
      <seq>ttttttttttttttttactagtaattctttggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattctgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgataggtttgaaggcgatgggtttgttgaggaagagggaagagtcggtgggtttgttgagaggtctgagaccttggaaagttggtgcagaaaacagagctgatgccattttttgagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70309" stop="87985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86899" g_stop="86913" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86914" i_stop="87142" i_length="229">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87143" g_stop="87685" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="558" r_length="543" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E738530" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738530" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86899" e_stop="86913"/>
          <exon e_start="87143" e_stop="87685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTT.....................................................................................................................................................................................................................................TACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738663" ref_strand="-" ref_description="SGN-E738663 [LC14CB03]">
      <seq>ttttttttttttttttactagtaattctttggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattctgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgataggtttgaaggcgatgggtttgttgaggaagagggaagagtcggtgggtttgttgagaggtctgagaccttggaaagttggtgcagaaaacagagctgatgccattttttgagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70309" stop="87984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86899" g_stop="86913" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86914" i_stop="87142" i_length="229">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87143" g_stop="87684" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="557" r_length="542" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E738663" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738663" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86899" e_stop="86913"/>
          <exon e_start="87143" e_stop="87684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTT.....................................................................................................................................................................................................................................TACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733322" ref_strand="-" ref_description="SGN-E733322 [LB04CC06]">
      <seq>tttttttttttttttttttactagtaattctttggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattctgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgataggtttgaaggcgatgggtttgttgaggaagagggaagagtcggtgggtttgttgagaggtctgagaccttggaaagttggtgcagaaaacagagctgatgccattttttgagttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="70310" stop="87983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86900" g_stop="86913" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.643"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86914" i_stop="87138" i_length="225">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87139" g_stop="87688" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="563" r_length="549" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E733322" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733322" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86900" e_stop="86913"/>
          <exon e_start="87139" e_stop="87688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTT.................................................................................................................................................................................................................................TTTTTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAG-TTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723212" ref_strand="+" ref_description="SGN-E723212 [FC19DB03]">
      <seq>ctgttttctgcaccaactttccaaggtctcagacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatctcagaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttactatatgtgtttttgttaactgattttatgtgaaattcatgtggttttgtgccaaagaattactagtactatctctgttttcttttgcatttgaattcgactatgcatccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="87961" stop="86795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87661" g_stop="87091" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E723212" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87661" e_stop="87091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCAAAAAATTTC</genome_strand>
        <mrna_strand>CTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284749" ref_strand="+" ref_description="SGN-E284749 [cLES-3-O21]">
      <seq>ttttggatgcatagtcgaattcaaatgcaaaagaaaacagagatagtactagtaattctttggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="86797" stop="87677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87097" g_stop="87377" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E284749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87097" e_stop="87377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCC</genome_strand>
        <mrna_strand>TTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732466" ref_strand="+" ref_description="SGN-E732466 [LB02BA05]">
      <seq>caataaccacatatactcctcaacacacccaaatttgcattgcatttcatcaaacaacaaactcaaaaaatggcatcagctctgttttctgcaccaactttccaaggtctcagacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatctcagaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttactatatgtgtttttgttaactgattttatgtgaaattcatgtggttttgtgccaaagaattactagtanaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="88042" stop="86843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87742" g_stop="87146" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="616"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E732466" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87742" e_stop="87146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAACCACATATACTCCTCAACACACCCAAATTTGCATTGCATTTCATCAAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTA</genome_strand>
        <mrna_strand>CAATAACCACATATACTCCTCAACACACCCAAATTTGCATTGCATTTCATCAAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715967" ref_strand="+" ref_description="SGN-E715967 [FB15DA10]">
      <seq>cgcatactcaaaaaatggcatcagctctgttttctgcaccaactttccaaggtctcagacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatcttagaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttactatatgtgtttttgttaactgattttatgtgaaattcatgtggttttgtgccaaagaattactagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="87985" stop="86843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87687" g_stop="87146" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="554"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E715967" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87687" e_stop="87146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTA</genome_strand>
        <mrna_strand>CGCATACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTTAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711906" ref_strand="+" ref_description="SGN-E711906 [FB03BD04]">
      <seq>catactcaaaaaatggcatcagctctgttttctgcaccaactttccaaggtctcagacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatctcagaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttactatatgtgtttttgttaactgattttatgtgaaattcatgtggttttgtgccaaagaattactagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="87985" stop="86843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87685" g_stop="87146" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="557"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E711906" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87685" e_stop="87146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTA</genome_strand>
        <mrna_strand>CATACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733843" ref_strand="+" ref_description="SGN-E733843 [LB11AD06]">
      <seq>aacaaactcaaaaaatggcatcagctctgttttctgcaccaactttccaaggtctcagacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatctcagaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="87987" stop="86906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87687" g_stop="87209" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="480" polyA_stop="494"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E733843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87687" e_stop="87209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACT</genome_strand>
        <mrna_strand>AACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732609" ref_strand="+" ref_description="SGN-E732609 [LB02CF03]">
      <seq>caaactcaaaaaatggcatcagctctgttttctgcaccaactttccaaggtctcagacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatctcagaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttactaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="87985" stop="86906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87685" g_stop="87209" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="491"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E732609" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87685" e_stop="87209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACT</genome_strand>
        <mrna_strand>CAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732545" ref_strand="+" ref_description="SGN-E732545 [LB02BH05]">
      <seq>ctgttttctgcaccaactttccaaggtctcagacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatctcagaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="87961" stop="86906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87661" g_stop="87209" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="463"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E732545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87661" e_stop="87209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACT</genome_strand>
        <mrna_strand>CTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732674" ref_strand="+" ref_description="SGN-E732674 [LB02DC10]">
      <seq>caaactcaaaaaatggcatcagctctgttttctgcaccaactttccaaggtctcagacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatctcagaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="87985" stop="86906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87685" g_stop="87211" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="489"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E732674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87685" e_stop="87211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTA</genome_strand>
        <mrna_strand>CAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717637" ref_strand="+" ref_description="SGN-E717637 [FC02BC02]">
      <seq>aatcggccgaattggttgctcaaatcagtgtgtgtttgcaaacacgagtttcagtttcatgaagaatgagtgactattcagctaaaaactgttagaccctctcccatttcatgactggagccgtgccacaacaaccatggctatgttgttgcgcaaggtatgggaatccgtatctactcgttccacttcgagcaattccacctcaacttcgatctcgactgtcaattccatggatcggttcgaccagatgatgatgtatatacagacggcgtccaccggagaatttgatcggattccgttagatattttcattcaaattttgaagattttagggccaaaagagtctgctaagctgacttctgtatgtaaatcctggaaatacattgtttccgataatcgcctatggatttactttcttcagaatcaccatgagccttgggattctacttttttctctgaaactcacttgagatctggacctcttaggacgtttccaaattcagtaccagaattgtcattcatgagtatttatggtcaacgtgctcaagtgcccggtgctattattattgatggtgggtctggctattgcaaatttggttggagtaagtatagtgctccgtcagggagatcagcgacatttttggagtttggcaacattgaatctccaatgtattctagattgagacacttcttttcaacgatatacaccaggatgcaggtgaaaacttcaacacagccgatcattgtgtccattccgatttgccattatgatgatactgaatctgataaagcagctagaacgcagttaaaagacgcgatccattctgcattatttgacatgaatgttcctgctgtttgtgctgtcaaccaggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="100097" stop="102952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100403" g_stop="100874" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="486" r_length="472" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100875" i_stop="101046" i_length="172">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101047" g_stop="101132" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="572" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101133" i_stop="101303" i_length="171">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101304" g_stop="101374" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="643" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101375" i_stop="101536" i_length="162">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101537" g_stop="101604" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="711" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101605" i_stop="102164" i_length="560">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102165" g_stop="102226" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="773" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102227" i_stop="102553" i_length="327">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102554" g_stop="102651" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="871" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E717637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100403" e_stop="100874"/>
          <exon e_start="101047" e_stop="101132"/>
          <exon e_start="101304" e_stop="101374"/>
          <exon e_start="101537" e_stop="101604"/>
          <exon e_start="102165" e_stop="102226"/>
          <exon e_start="102554" e_stop="102651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTCAAATCAGTGTGTGTTTGCAAACACGAGTTTCAGTTTCATGAAGAATGAGTGACTATTCAGCTAAAAACTGTTAGACCCTCTCCCATTTCATGACTGGAGCCGTGCCACAACAACCATGGCTATGTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAGGTAAATTCCTTTTTACAGTTCTGCTTTTTGAATGTCAAATTAGGTGAACTTTCCAATTGGTTTAATGTAATTTAGCTGAACTAATTTGGGACGGAGGGAGTAGTAGATGAAAGAGTGAAGTATAGATGAGGATATCATGAGTAGCTGGTTTGATAAGGTGTATGATTTGTAGGACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATGGTGCGTGCCTTTCTATGTGTTACACTCGATCTTTTAGTTGGCATACTGCTCTAGTTGTTTTTTTTAACTGATTCGAGGATAAATTCTAATGAAACAGAGTATTATGTGAACAGTACAAAGAGAAATGATTTCTTTGAGCTTATTTATCTTTCTGATTTTTCTCACTAAAAGGTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTGGTGAGCTTTCTTATGAGTTAACAGTTGTAGTTGTTAATTTGTGAAAATCACTTGCATTTTTGACTATTTGAGGCTTTTTTTGTTGTTTTAACTACTTGTATTGTTCCATGTGCTCGGCAAATTCTCACCCTAATCCTTCCTGAAAAATTGTACCATTGACAGGAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAGGTTTGTGTTCCGTTCATTTTTGGTGTCATTTTACATTGGTCCCATATGACAACATCCACCTAAACCAACATCCATTGTTGAGCAATCTAAACAGGTTTTTGGTTCTCAAACATAATTTGATTTTCATAAAATGCTTTTTAACACCATATAACAGGCCTCTACGATATTTTTTACATTATTAATTGATTGTAATACGGACATTTGGTTGGCAAAGAAGAATCTGCATCAAAGTTTTATCTATGAAAGGACTCTCTGTATCATTATGTTGTCAATGTGGCACATATCCTGATTGTTTATCATATAATTCACTAATAAGATTTCCTCTATTCATATAATAAATCACCAGTTTTACCCACTTAAGAGAGCAAAAGGTATAAAGGGCTGGAATCACAATGACTTCCAGAATTTGACTAAAACACCTCGCATCTTTTTTAGAGTACTACCGTATAGCTCCCTACAAACCAGAACTAGAAGATAAGATATGAGCTTGTTCCTTAGACCCAAGGTTGCTGGAATCCTTTTATAAATTTCTCTCTTCTGCTGTTATGGATTCTTTGCAGGATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCGATTTGCCATTATGATGGTCAGTTTCTATTTGGGCGTTGCTGAAAATCCAGTCAAATTTCTGTAAATATAACGTATCAACGACTCAATTTGTTGTTTAGAGGGCAAATATTATTTCACAATATATGCATGTGTCCATTTTTACTTGATGAATCAGCTCATGCAACTCTATTTTTGAACATTCTTCCATTTGACTTTTGAGCAAGAGGGTAAGGTGCTAAAAGGTTTGAATAGTTATCTCACTCAATTAAATCTTCAACTACTAAGAAGTGAGCATAGTAAGATCTTTTCAGTGCACCAAACCAAGGCCTTCCTTTTTCTTTCTAACTTCTCTTTACCTATACAGATACTGAATCTGATAAAGCAGCTAGAACGCAGTTAAAAGACGCGATCCATTCTGCATTATTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAG</genome_strand>
        <mrna_strand>GTTGCTCAAATCAGTGTGTGTTTGCAAACACGAGTTTCAGTTTCATGAAGAATGAGTGACTATTCAGCTAAAAACTGTTAGACCCTCTCCCATTTCATGACTGGAGCCGTGCCACAACAACCATGGCTATGTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAG............................................................................................................................................................................GACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATG...........................................................................................................................................................................GTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTG..................................................................................................................................................................GAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCGATTTGCCATTATGATG.......................................................................................................................................................................................................................................................................................................................................ATACTGAATCTGATAAAGCAGCTAGAACGCAGTTAAAAGACGCGATCCATTCTGCATTATTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321526" ref_strand="+" ref_description="SGN-E321526 [cTOB-23-N10]">
      <seq>tttgcaaacacgagtttcagtttcatgaagaatgagtgactattcagctaaaaactgttagaccctctcccatttcatgactggagccgtgccacaacaaccatggctatgttgttgcgcaaggtatgggaatccgtatctactcgttccacttcgagcaattccacctcaacttcgatctcgactgtcaattccatggatcggttcgaccagatgatgatgtatatacagacggcgtccaccggagaatttgatcggattccgttagatattttcattcaaattttgaagattttagggccaaaagagtctgctaagctgacttctgtatgtaaatcctggaaatacattgtttccgataatcgcctatggatttactttcttcagaatcaccatgagccttgggattctacttttttctctgaaactcacttgagatctggacctcttaggacgtttccaaattcagtaccagaattgtcattcatgagtatttatggtcaacgtgctcaagtgcccggtgctattattattgatggtgggtctggctattgcaaatttggttggagtaagtatagtgctccgtcagggagatcagcgacatttttggagtttggcaacattgaatctcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="100123" stop="101862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100423" g_stop="100874" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100875" i_stop="101046" i_length="172">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101047" g_stop="101132" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="538" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101133" i_stop="101303" i_length="171">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101304" g_stop="101374" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="609" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101375" i_stop="101536" i_length="162">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101537" g_stop="101562" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="635" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E321526" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100423" e_stop="100874"/>
          <exon e_start="101047" e_stop="101132"/>
          <exon e_start="101304" e_stop="101374"/>
          <exon e_start="101537" e_stop="101562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAAACACGAGTTTCAGTTTCATGAAGAATGAGTGACTATTCAGCTAAAAACTGTTAGACCCTCTCCCATTTCATGACTGGAGCCGTGCCACAACAACCATGGCTATGTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAGGTAAATTCCTTTTTACAGTTCTGCTTTTTGAATGTCAAATTAGGTGAACTTTCCAATTGGTTTAATGTAATTTAGCTGAACTAATTTGGGACGGAGGGAGTAGTAGATGAAAGAGTGAAGTATAGATGAGGATATCATGAGTAGCTGGTTTGATAAGGTGTATGATTTGTAGGACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATGGTGCGTGCCTTTCTATGTGTTACACTCGATCTTTTAGTTGGCATACTGCTCTAGTTGTTTTTTTTAACTGATTCGAGGATAAATTCTAATGAAACAGAGTATTATGTGAACAGTACAAAGAGAAATGATTTCTTTGAGCTTATTTATCTTTCTGATTTTTCTCACTAAAAGGTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTGGTGAGCTTTCTTATGAGTTAACAGTTGTAGTTGTTAATTTGTGAAAATCACTTGCATTTTTGACTATTTGAGGCTTTTTTTGTTGTTTTAACTACTTGTATTGTTCCATGTGCTCGGCAAATTCTCACCCTAATCCTTCCTGAAAAATTGTACCATTGACAGGAGTTTGGCAACATTGAATCTCCAAT</genome_strand>
        <mrna_strand>TTTGCAAACACGAGTTTCAGTTTCATGAAGAATGAGTGACTATTCAGCTAAAAACTGTTAGACCCTCTCCCATTTCATGACTGGAGCCGTGCCACAACAACCATGGCTATGTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAG............................................................................................................................................................................GACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATG...........................................................................................................................................................................GTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTG..................................................................................................................................................................GAGTTTGGCAACATTGAATCTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277824" ref_strand="+" ref_description="SGN-E277824 [cLEL-5-C4](-)">
      <seq>ggtccagatctccagtgagtttcagagaaaaaagtagaatcccaaggctcatggtgattttgaagaaagtaaatccataggcgattatcggaaacaatgtatttccaggatttacatacagaagtcagcttagcagactcttttggccctaaaatcttcaaaatttgaatgaaaatatctaacggaatccgatcaaattctccggtggacgccgtctgtatatacatcatcatctggtcgaaccgatccatggaattgacagtcgagatcgaagttgaggtggaattgctcgaagtggaacgagtagatacggattcccataccttgcgcaacaacatagccatggttgttgtggcacggctccagtcatgaaatgggagagggtctaacagtttttagctgaatagtcactcattcttcatgaaactgaaactcgtgtttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="101168" stop="100128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100868" g_stop="100428" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E277824" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100868" e_stop="100428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCAGATCTCAAGTGAGTTTCAGAGAAAAAAGTAGAATCCCAAGGCTCATGGTGATTCTGAAGAAAGTAAATCCATAGGCGATTATCGGAAACAATGTATTTCCAGGATTTACATACAGAAGTCAGCTTAGCAGACTCTTTTGGCCCTAAAATCTTCAAAATTTGAATGAAAATATCTAACGGAATCCGATCAAATTCTCCGGTGGACGCCGTCTGTATATACATCATCATCTGGTCGAACCGATCCATGGAATTGACAGTCGAGATCGAAGTTGAGGTGGAATTGCTCGAAGTGGAACGAGTAGATACGGATTCCCATACCTTGCGCAACAACATAGCCATGGTTGTTGTGGCACGGCTCCAGTCATGAAATGGGAGAGGGTCTAACAGTTTTTAGCTGAATAGTCACTCATTCTTCATGAAACTGAAACTCGTGTTT</genome_strand>
        <mrna_strand>GGTCCAGATCTCCAGTGAGTTTCAGAGAAAAAAGTAGAATCCCAAGGCTCATGGTGATTTTGAAGAAAGTAAATCCATAGGCGATTATCGGAAACAATGTATTTCCAGGATTTACATACAGAAGTCAGCTTAGCAGACTCTTTTGGCCCTAAAATCTTCAAAATTTGAATGAAAATATCTAACGGAATCCGATCAAATTCTCCGGTGGACGCCGTCTGTATATACATCATCATCTGGTCGAACCGATCCATGGAATTGACAGTCGAGATCGAAGTTGAGGTGGAATTGCTCGAAGTGGAACGAGTAGATACGGATTCCCATACCTTGCGCAACAACATAGCCATGGTTGTTGTGGCACGGCTCCAGTCATGAAATGGGAGAGGGTCTAACAGTTTTTAGCTGAATAGTCACTCATTCTTCATGAAACTGAAACTCGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292495" ref_strand="+" ref_description="SGN-E292495 [cLET-16-D6]">
      <seq>ttcagctaaaaactgttagaccctctcccatttcatgactggagccgtgccacaacaaccatggctatgttgttgcgcaaggtatgggaatccgtatctactcgttccacttcgagcaattccacctcaacttcgatctcgactgtcaattccatggatcggttcgaccagatgatgatgtatatacagacggcgtccaccggagaatttgatcggattccgttagatattttcattcaaattttgaagattttagggccaaaagagtctgctaagctgacttctgtatgtaaatcctggaaatacattgtttccgataatcgcctatggatttactttcttcagaatcaccatgagccttgggattctacttttttctctgaaactcacttgagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="100165" stop="101163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100465" g_stop="100863" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E292495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100465" e_stop="100863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCTAAAAACTGTTAGACCCTCTCCCATTTCATGACTGGAGCCGTGCCACAACAACCATGGCTATGTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCT</genome_strand>
        <mrna_strand>TTCAGCTAAAAACTGTTAGACCCTCTCCCATTTCATGACTGGAGCCGTGCCACAACAACCATGGCTATGTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346076" ref_strand="+" ref_description="SGN-E346076 [cTOF-24-H24]">
      <seq>tcagctaaaaactgttagaccctctccctttcatgactggagccgtgccacaacaaccatggctatgttgttgcgcaaggtatgggaatccgtatctactcgttccacttcgagcaattccacctcaacttcgatctcgactgtcaattccatggatcggttcgaccagatgatgatgtatatacagacggcgtccaccggagaatttgatcggattccgttagatattttcattcaaattttgaagattttagggccaaaagagtctgctaagctgacttctgtatgtaaatcctggaaatacattgtttccgataatcgcctatggatttactttcttcagaatcaccatgagccttgggattctacttttttctctgaaactcacttgagatctggacctcttaggacgtttccaaattcagtaccagaattgtcattcatgagtatttatggtcaacgtgctcaagtgcccggtgctattattattgatggtgggtctggctattgcaaatttggttggagtaagtatagtgctccgtcagggagatcagcgacatttttggagtttggcaacattgaatctccaatgtattctagattgagacacttcttttcaacgatatacaccaggatgcangtgaaaacttcacacagccgatcattgtgtncattccgatttgccattatgatgatcctgaatctgataagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="100166" stop="102529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100466" g_stop="100874" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100875" i_stop="101046" i_length="172">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101047" g_stop="101132" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="494" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101133" i_stop="101303" i_length="171">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101304" g_stop="101374" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="565" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101375" i_stop="101536" i_length="162">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101537" g_stop="101604" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="633" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101605" i_stop="102164" i_length="560">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102165" g_stop="102226" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="694" r_length="61" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E346076" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100466" e_stop="100874"/>
          <exon e_start="101047" e_stop="101132"/>
          <exon e_start="101304" e_stop="101374"/>
          <exon e_start="101537" e_stop="101604"/>
          <exon e_start="102165" e_stop="102226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTAAAAACTGTTAGACCCTCTCCCATTTCATGACTGGAGCCGTGCCACAACAACCATGGCTATGTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAGGTAAATTCCTTTTTACAGTTCTGCTTTTTGAATGTCAAATTAGGTGAACTTTCCAATTGGTTTAATGTAATTTAGCTGAACTAATTTGGGACGGAGGGAGTAGTAGATGAAAGAGTGAAGTATAGATGAGGATATCATGAGTAGCTGGTTTGATAAGGTGTATGATTTGTAGGACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATGGTGCGTGCCTTTCTATGTGTTACACTCGATCTTTTAGTTGGCATACTGCTCTAGTTGTTTTTTTTAACTGATTCGAGGATAAATTCTAATGAAACAGAGTATTATGTGAACAGTACAAAGAGAAATGATTTCTTTGAGCTTATTTATCTTTCTGATTTTTCTCACTAAAAGGTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTGGTGAGCTTTCTTATGAGTTAACAGTTGTAGTTGTTAATTTGTGAAAATCACTTGCATTTTTGACTATTTGAGGCTTTTTTTGTTGTTTTAACTACTTGTATTGTTCCATGTGCTCGGCAAATTCTCACCCTAATCCTTCCTGAAAAATTGTACCATTGACAGGAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAGGTTTGTGTTCCGTTCATTTTTGGTGTCATTTTACATTGGTCCCATATGACAACATCCACCTAAACCAACATCCATTGTTGAGCAATCTAAACAGGTTTTTGGTTCTCAAACATAATTTGATTTTCATAAAATGCTTTTTAACACCATATAACAGGCCTCTACGATATTTTTTACATTATTAATTGATTGTAATACGGACATTTGGTTGGCAAAGAAGAATCTGCATCAAAGTTTTATCTATGAAAGGACTCTCTGTATCATTATGTTGTCAATGTGGCACATATCCTGATTGTTTATCATATAATTCACTAATAAGATTTCCTCTATTCATATAATAAATCACCAGTTTTACCCACTTAAGAGAGCAAAAGGTATAAAGGGCTGGAATCACAATGACTTCCAGAATTTGACTAAAACACCTCGCATCTTTTTTAGAGTACTACCGTATAGCTCCCTACAAACCAGAACTAGAAGATAAGATATGAGCTTGTTCCTTAGACCCAAGGTTGCTGGAATCCTTTTATAAATTTCTCTCTTCTGCTGTTATGGATTCTTTGCAGGATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCGATTTGCCATTATGATG</genome_strand>
        <mrna_strand>TCAGCTAAAAACTGTTAGACCCTCTCCC-TTTCATGACTGGAGCCGTGCCACAACAACCATGGCTATGTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAG............................................................................................................................................................................GACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATG...........................................................................................................................................................................GTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTG..................................................................................................................................................................GAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCANGTGAAAACTTC-ACACAGCCGATCATTGTGTNCATTCCGATTTGCCATTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556819" ref_strand="+" ref_description="SGN-E556819 [cTSD-4-L12]">
      <seq>gttgttgcgcaaggtatgggaatccgtatctactcgttccacttcgagcaattccacctcaacttcgatctcgactgtcaattccatggatcggttcgaccagatgatgatgtatatacagacggcgtccaccggagaatttgatcggattccgttagatattttcattcaaattttgaagattttagggccaaaagagtctgctaagctgacttctgtatgtaaatcctggaaatacattgtttccgataatcgcctatggatttactttcttcagaatcaccatgagccttgggattctacttttttctctgaaactcacttgagatctggacctcttaggacgtttccaaattcagtaccagaattgtcattcatgagtatttatggtcaacgtgctcaagtgcccggtgctattattattgatggtgggtctggctattgcaaatttggttggagtaagtatagtgctccgtcagggagatcagcgacatttttggagtttggcaacattgaatctccaatgtattctagattgagacacttcttttcaacgatatacaccaggatgcaggtgaaaacttcaacacagccgatcattgtgtccattccgatttgccattatgatgatactgaatctgataaagcagctagaacgcagttaaaagacgcgatccattctgcattatttgacatgaatgttcctgctgtttgtgctgtcaaccaggctgttttagctttatttgctgcaaggaaagtttcaggaatagtagtcaacattgggtttaaccagacatctattgttccaattctctacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="100233" stop="103745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100533" g_stop="100874" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100875" i_stop="101046" i_length="172">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101047" g_stop="101132" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="428" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101133" i_stop="101303" i_length="171">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101304" g_stop="101374" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="499" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101375" i_stop="101536" i_length="162">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101537" g_stop="101604" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="567" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101605" i_stop="102164" i_length="560">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102165" g_stop="102226" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="629" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102227" i_stop="102553" i_length="327">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102554" g_stop="102651" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="727" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102652" i_stop="103361" i_length="710">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="103362" g_stop="103443" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="809" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E556819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100533" e_stop="100874"/>
          <exon e_start="101047" e_stop="101132"/>
          <exon e_start="101304" e_stop="101374"/>
          <exon e_start="101537" e_stop="101604"/>
          <exon e_start="102165" e_stop="102226"/>
          <exon e_start="102554" e_stop="102651"/>
          <exon e_start="103362" e_stop="103443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAGGTAAATTCCTTTTTACAGTTCTGCTTTTTGAATGTCAAATTAGGTGAACTTTCCAATTGGTTTAATGTAATTTAGCTGAACTAATTTGGGACGGAGGGAGTAGTAGATGAAAGAGTGAAGTATAGATGAGGATATCATGAGTAGCTGGTTTGATAAGGTGTATGATTTGTAGGACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATGGTGCGTGCCTTTCTATGTGTTACACTCGATCTTTTAGTTGGCATACTGCTCTAGTTGTTTTTTTTAACTGATTCGAGGATAAATTCTAATGAAACAGAGTATTATGTGAACAGTACAAAGAGAAATGATTTCTTTGAGCTTATTTATCTTTCTGATTTTTCTCACTAAAAGGTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTGGTGAGCTTTCTTATGAGTTAACAGTTGTAGTTGTTAATTTGTGAAAATCACTTGCATTTTTGACTATTTGAGGCTTTTTTTGTTGTTTTAACTACTTGTATTGTTCCATGTGCTCGGCAAATTCTCACCCTAATCCTTCCTGAAAAATTGTACCATTGACAGGAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAGGTTTGTGTTCCGTTCATTTTTGGTGTCATTTTACATTGGTCCCATATGACAACATCCACCTAAACCAACATCCATTGTTGAGCAATCTAAACAGGTTTTTGGTTCTCAAACATAATTTGATTTTCATAAAATGCTTTTTAACACCATATAACAGGCCTCTACGATATTTTTTACATTATTAATTGATTGTAATACGGACATTTGGTTGGCAAAGAAGAATCTGCATCAAAGTTTTATCTATGAAAGGACTCTCTGTATCATTATGTTGTCAATGTGGCACATATCCTGATTGTTTATCATATAATTCACTAATAAGATTTCCTCTATTCATATAATAAATCACCAGTTTTACCCACTTAAGAGAGCAAAAGGTATAAAGGGCTGGAATCACAATGACTTCCAGAATTTGACTAAAACACCTCGCATCTTTTTTAGAGTACTACCGTATAGCTCCCTACAAACCAGAACTAGAAGATAAGATATGAGCTTGTTCCTTAGACCCAAGGTTGCTGGAATCCTTTTATAAATTTCTCTCTTCTGCTGTTATGGATTCTTTGCAGGATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCGATTTGCCATTATGATGGTCAGTTTCTATTTGGGCGTTGCTGAAAATCCAGTCAAATTTCTGTAAATATAACGTATCAACGACTCAATTTGTTGTTTAGAGGGCAAATATTATTTCACAATATATGCATGTGTCCATTTTTACTTGATGAATCAGCTCATGCAACTCTATTTTTGAACATTCTTCCATTTGACTTTTGAGCAAGAGGGTAAGGTGCTAAAAGGTTTGAATAGTTATCTCACTCAATTAAATCTTCAACTACTAAGAAGTGAGCATAGTAAGATCTTTTCAGTGCACCAAACCAAGGCCTTCCTTTTTCTTTCTAACTTCTCTTTACCTATACAGATACTGAATCTGATAAAGCAGCTAGAACGCAGTTAAAAGACGCGATCCATTCTGCATTATTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGTAGTACTTATTCATTTCCTTCAACTTATGTTGGATTCCCGGAGGTGATTAAAGTTGTTAGTTTTGATAATCTTGGTTGTTCTTTTAAAAGTTCTAAGCTCGTAGCAAAACTTTGTTAGATAACAATCTTGGTTGTACTCTTAGAAGTTCTAAGCTCATAGAAGAACTTTGTTAGATTGAGGAAGAAAAAACATTTATGTCATTGTTGAGCGACATTTATGAACATGTTACATATAAAGCAGAATCTGTCCTTTCATAAGCTAGTGTACATCTACAGATAAGCTTTTCTTTCAACAGGGGGACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTATTTAATGGTCATGGACTGTTTTCAGTCAAATAGCCCCACTTCTCACTTTCCACTAATAATATCTTAAACATATTTGACTAACTAATGAAGTACTTGATGCTTTATACTGTTAATGGCAAAAACTAAACATTAATAACATGGGGAGAGAAAATGATCAAAATGTCACTAACTTGGCAAACTTTTCCTGTTCTCTTTCTAAGATTGTATTATACATTACCACGATTCTTCCAAAGTTTTAGACATAATCTGATTTTGGATTTATAATAGTATTATGATGTCTTTCTTTCAAAAACTATAGGCTGTTTTAGCTTTATTTGCTGCAAGGAAAGTTTCAGGAATAGTAGTCAACATTGGGTTTAACCAGACATCTATTGTTCCAA</genome_strand>
        <mrna_strand>GTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAG............................................................................................................................................................................GACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATG...........................................................................................................................................................................GTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTG..................................................................................................................................................................GAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCGATTTGCCATTATGATG.......................................................................................................................................................................................................................................................................................................................................ATACTGAATCTGATAAAGCAGCTAGAACGCAGTTAAAAGACGCGATCCATTCTGCATTATTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTTTAGCTTTATTTGCTGCAAGGAAAGTTTCAGGAATAGTAGTCAACATTGGGTTTAACCAGACATCTATTGTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202603" ref_strand="+" ref_description="SGN-E202603 [cLEC-19-N13]">
      <seq>ccacttcgagcaattccacctcaacttcgatctcgactgtcaattccatggatcggttcgaccagatgatgatgtatatacagacggcgtccaccggagaatttgatcggattccgttagatattttcattcaaattttgaagattttagggccaaaagagtctgctaagctgacttctgtatgtaaatcctggaaatacattgtttccgataatcgcctatggatttactttcttcagaatcaccatgagccttgggattctacttttttctctgaaactcacttgagatctggacctcttaggtaaattcctttttacagttctgctttttgaatgtcaaattaggtgaactttccaattggtttaatgtaatttagctgaactaatttgggacggagggagtagtagatgaaagagtgaagtatagatgaggatatcatgagtagctggtttgataaggtgtatgatttgtaggacgtttccaaattcagtaccagaattgtcattcatgagtatttatggtcaacgtgctcaagtgcccggtgctattattattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="100271" stop="101430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100571" g_stop="101130" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E202603" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100571" e_stop="101130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAGGTAAATTCCTTTTTACAGTTCTGCTTTTTGAATGTCAAATTAGGTGAACTTTCCAATTGGTTTAATGTAATTTAGCTGAACTAATTTGGGACGGAGGGAGTAGTAGATGAAAGAGTGAAGTATAGATGAGGATATCATGAGTAGCTGGTTTGATAAGGTGTATGATTTGTAGGACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGA</genome_strand>
        <mrna_strand>CCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAGGTAAATTCCTTTTTACAGTTCTGCTTTTTGAATGTCAAATTAGGTGAACTTTCCAATTGGTTTAATGTAATTTAGCTGAACTAATTTGGGACGGAGGGAGTAGTAGATGAAAGAGTGAAGTATAGATGAGGATATCATGAGTAGCTGGTTTGATAAGGTGTATGATTTGTAGGACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325003" ref_strand="+" ref_description="SGN-E325003 [cTOC-11-P12]">
      <seq>cacctcaacttcgatctcgactgtcaattccatggatcggttcgaccagatgatgatgtatatacagacggcgtgcaccggagaatttgatcggattccgttagatattatcattcaaatcttgaagatttcagggccaaaagagtctgctaagctgacttctgtatgtaaatcctggaaatacattgtttccgataatcgcctatggatttactttcttcagaatcaccatgagccttgggattctacttttttctctgaaactcacttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="100287" stop="101159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100587" g_stop="100859" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E325003" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100587" e_stop="100859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAG</genome_strand>
        <mrna_strand>CACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTGCACCGGAGAATTTGATCGGATTCCGTTAGATATTATCATTCAAATCTTGAAGATTTCAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728015" ref_strand="+" ref_description="SGN-E728015 [LA16BG04]">
      <seq>tgtcattcatgagtatttatggtcaacgtgctcaagtgcccggtgctattattattgatggtgggtctggctattgcaaatttggttggagtaagtatagtgctccgtcagggagatcagcgacatttttggagtttggcaacattgaatctccaatgtattctagattgagacacttcttttcaacgatatacaccaggatgcaggtgaaaacttcaacacagccgatcattgtgtccattccgatttgccattatgatgatactgaatctgataaagcagctagaacgcagttaaaagacgcgatccattctgcattatttgacatgaatgttcctgctgtttgtgctgtcaaccaggctgttttagctttatttgctgcaaggaaagtttcaggaatagtagtcaacattgggtttaaccagacatctattgttccaattctctacggtaaagtcatgcaccaagtaggtgtggaagttgtgggaattggagcattgaagcttacaggattccttaaggagcagatgcaacagaagaatatttattttgggtcactttacactgtgcggactctgaaagagaacctttgttatattgcacttgattatgaagctgaactatccaaagataccaacgcatcttttcagatcgggtctgaaggttgctttacactttcagaagagcgctttaaaacaggagagattttgttccagcctcgcattgcaggagtgcgtgctatgggtttacagaatgctgtggcgctgtgcatggagcactgccatgacgctgaattaatggttgatgatagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="100773" stop="105712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101073" g_stop="101132" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101133" i_stop="101303" i_length="171">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101304" g_stop="101374" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="131" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101375" i_stop="101536" i_length="162">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101537" g_stop="101604" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="199" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101605" i_stop="102164" i_length="560">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102165" g_stop="102226" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="261" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102227" i_stop="102553" i_length="327">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102554" g_stop="102651" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="359" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102652" i_stop="103361" i_length="710">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103362" g_stop="103443" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="441" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="103444" i_stop="103900" i_length="457">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="103901" g_stop="104043" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="584" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104044" i_stop="104741" i_length="698">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104742" g_stop="104890" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="733" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="104891" i_stop="105330" i_length="440">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="105331" g_stop="105412" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="815" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E728015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101073" e_stop="101132"/>
          <exon e_start="101304" e_stop="101374"/>
          <exon e_start="101537" e_stop="101604"/>
          <exon e_start="102165" e_stop="102226"/>
          <exon e_start="102554" e_stop="102651"/>
          <exon e_start="103362" e_stop="103443"/>
          <exon e_start="103901" e_stop="104043"/>
          <exon e_start="104742" e_stop="104890"/>
          <exon e_start="105331" e_stop="105412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATGGTGCGTGCCTTTCTATGTGTTACACTCGATCTTTTAGTTGGCATACTGCTCTAGTTGTTTTTTTTAACTGATTCGAGGATAAATTCTAATGAAACAGAGTATTATGTGAACAGTACAAAGAGAAATGATTTCTTTGAGCTTATTTATCTTTCTGATTTTTCTCACTAAAAGGTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTGGTGAGCTTTCTTATGAGTTAACAGTTGTAGTTGTTAATTTGTGAAAATCACTTGCATTTTTGACTATTTGAGGCTTTTTTTGTTGTTTTAACTACTTGTATTGTTCCATGTGCTCGGCAAATTCTCACCCTAATCCTTCCTGAAAAATTGTACCATTGACAGGAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAGGTTTGTGTTCCGTTCATTTTTGGTGTCATTTTACATTGGTCCCATATGACAACATCCACCTAAACCAACATCCATTGTTGAGCAATCTAAACAGGTTTTTGGTTCTCAAACATAATTTGATTTTCATAAAATGCTTTTTAACACCATATAACAGGCCTCTACGATATTTTTTACATTATTAATTGATTGTAATACGGACATTTGGTTGGCAAAGAAGAATCTGCATCAAAGTTTTATCTATGAAAGGACTCTCTGTATCATTATGTTGTCAATGTGGCACATATCCTGATTGTTTATCATATAATTCACTAATAAGATTTCCTCTATTCATATAATAAATCACCAGTTTTACCCACTTAAGAGAGCAAAAGGTATAAAGGGCTGGAATCACAATGACTTCCAGAATTTGACTAAAACACCTCGCATCTTTTTTAGAGTACTACCGTATAGCTCCCTACAAACCAGAACTAGAAGATAAGATATGAGCTTGTTCCTTAGACCCAAGGTTGCTGGAATCCTTTTATAAATTTCTCTCTTCTGCTGTTATGGATTCTTTGCAGGATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCGATTTGCCATTATGATGGTCAGTTTCTATTTGGGCGTTGCTGAAAATCCAGTCAAATTTCTGTAAATATAACGTATCAACGACTCAATTTGTTGTTTAGAGGGCAAATATTATTTCACAATATATGCATGTGTCCATTTTTACTTGATGAATCAGCTCATGCAACTCTATTTTTGAACATTCTTCCATTTGACTTTTGAGCAAGAGGGTAAGGTGCTAAAAGGTTTGAATAGTTATCTCACTCAATTAAATCTTCAACTACTAAGAAGTGAGCATAGTAAGATCTTTTCAGTGCACCAAACCAAGGCCTTCCTTTTTCTTTCTAACTTCTCTTTACCTATACAGATACTGAATCTGATAAAGCAGCTAGAACGCAGTTAAAAGACGCGATCCATTCTGCATTATTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGTAGTACTTATTCATTTCCTTCAACTTATGTTGGATTCCCGGAGGTGATTAAAGTTGTTAGTTTTGATAATCTTGGTTGTTCTTTTAAAAGTTCTAAGCTCGTAGCAAAACTTTGTTAGATAACAATCTTGGTTGTACTCTTAGAAGTTCTAAGCTCATAGAAGAACTTTGTTAGATTGAGGAAGAAAAAACATTTATGTCATTGTTGAGCGACATTTATGAACATGTTACATATAAAGCAGAATCTGTCCTTTCATAAGCTAGTGTACATCTACAGATAAGCTTTTCTTTCAACAGGGGGACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTATTTAATGGTCATGGACTGTTTTCAGTCAAATAGCCCCACTTCTCACTTTCCACTAATAATATCTTAAACATATTTGACTAACTAATGAAGTACTTGATGCTTTATACTGTTAATGGCAAAAACTAAACATTAATAACATGGGGAGAGAAAATGATCAAAATGTCACTAACTTGGCAAACTTTTCCTGTTCTCTTTCTAAGATTGTATTATACATTACCACGATTCTTCCAAAGTTTTAGACATAATCTGATTTTGGATTTATAATAGTATTATGATGTCTTTCTTTCAAAAACTATAGGCTGTTTTAGCTTTATTTGCTGCAAGGAAAGTTTCAGGAATAGTAGTCAACATTGGGTTTAACCAGACATCTATTGTTCCAAGTAAGTTTTTTATTCATGTACTGGACTTATGGTTCTTGTTTGACTTTATTGTATACTTGTTTTTGTAGAACTCATTCATTTTTAATTCTTTGAACTGTGAAAGTTTTTTTTTTGTTTTTTGAGTTGCTAGTAGGATATTTAGAAACTGAGTTTGTATTCTCCAGCTTTCTGAGTTAATCAGCGGTGACCAGACAACCCCTGAGATGAATCACAGATGGGTTCCAATGTTTCTTGTTAAACTAATTTCATCTTACATTTGCTTTACTCCTTTTAAATTACCTTATCAAAAAGAAAGTTTGTGCTCTCTAATTGTTTATTCTTTCTGATGATTTAATTTACTCTTAAATTTCTTCATGAACAACGTACATGGATTGCATGTTTTTATTTCTCTTCGTGTCTGCAATTTGATTGCATTGTTTCAATAATTTATGTGTAGCCACTTTTTGGTCTTTTACAGTTCTCTACGGTAAAGTCATGCACCAAGTAGGTGTGGAAGTTGTGGGAATTGGAGCATTGAAGCTTACAGGATTCCTTAAGGAGCAGATGCAACAGAAGAATATTTATTTTGGGTCACTTTACACTGTGCGGACTCTGAAAGAGGTATCAACTTTCTGTCATAGAACATTTAGGGTGGGAAGGAAGCGGGTTTCACTTAGACATGATTCTTTGCACTATTTCTACCTTGCAAGTGAAAAGTTACTGAATCACTTCAAAAATATGCCGTGGTAACATTTTTGTTACTGGAAACCATTTCGTTGTACATAAAATTTTGAATTGCCGCGTCCCTCTACTGCCACATCTAGATACTAACAATCTTGAGAAGTGCTTGGTCAGATAATCATAGCTCCAGCACTACTGCATATGCACTAGCTGCTGATAACCTCAATAAACCATTAAATGCATATCTTAGTTGTGTGAGTTCTTTGTGACTTTCTTCTTGACTACACATTGTCGAATTACAATAATCTGTAAAGTTTGCAAAGTAATTTAAGTTCTAAGTTTTCCAGAAATTTATGGTATCTGAAGAGGAAAATGTGATGAACAAATTTAAGAGTTATTGCAGATCTTCTGCTTCACTTTTTCACTATATTTTGTTTATTTAAAAATAAAGATGTTATTAGTGTACAATTTCTCTGTTATTTTTATCTTAGTAACATAAATCATGTTAGATTCAGTTAGTTTTGATCCTGTGACAAACATAGACTTGAAAAGCCTAGCTGCATGAGAGTTACGGTTACTTTTAATTTCTTAGTGATGTTTTCGAGTATTTTCTGAGGTCCATTTGGTCCGTATTGCAGAACCTTTGTTATATTGCACTTGATTATGAAGCTGAACTATCCAAAGATACCAACGCATCTTTTCAGATCGGGTCTGAAGGTTGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGTGTACGTTCATATTACCTTATTTGGACTTTTAGTAAGACTATTGAACAACTCCAGTTTCAATTACTTCCCTTAGGGCATAAAGGCCTTTTAAAAAACTGGAGTAGATCCTGCACATGACAAAGTGAATTTGGACTATGTAGTCAATTGGAACCTTGTTGCATCAGGTCTTTCCTGAAACTTATTTTCTTAAATGCGAATGGAGAGACAGATTTGTACTCAGGGCGGGTGGGGGCAGTTCTAGACATCGTATTCTCATTTTGAGTCTACACTCTACTATGGTCAACTGATGATGCCGGTTTCTTGACTTATATCATTTAGACAAAGTGGTGTTTTTGTGGATGCAACTGGTGAAACACAACTGACCCCCACCCCCCAATTACCTCAAAAAAGAACAAGGATCTGTAGTATGGAAAATTAGTAGATTTGCGGTCTTGTTTCAGGCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGG</genome_strand>
        <mrna_strand>TGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATG...........................................................................................................................................................................GTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTG..................................................................................................................................................................GAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCGATTTGCCATTATGATG.......................................................................................................................................................................................................................................................................................................................................ATACTGAATCTGATAAAGCAGCTAGAACGCAGTTAAAAGACGCGATCCATTCTGCATTATTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTTTAGCTTTATTTGCTGCAAGGAAAGTTTCAGGAATAGTAGTCAACATTGGGTTTAACCAGACATCTATTGTTCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTACGGTAAAGTCATGCACCAAGTAGGTGTGGAAGTTGTGGGAATTGGAGCATTGAAGCTTACAGGATTCCTTAAGGAGCAGATGCAACAGAAGAATATTTATTTTGGGTCACTTTACACTGTGCGGACTCTGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTTGTTATATTGCACTTGATTATGAAGCTGAACTATCCAAAGATACCAACGCATCTTTTCAGATCGGGTCTGAAGGTTGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261487" ref_strand="+" ref_description="SGN-E261487 [cLEG-57-E19]">
      <seq>tggagtttggcaacattgaatctccaatgtattctagattgagacacttcttttcaacgatatacaccaggatgcaggtgaaaacttcaacacagccgatcattgtgtccattccgatttgccattatgatgatactgaatctgataaagcagctagaacgcagttaaaagacgcgatccattctgcattatttgacatgaatgttcctgctgtttgtgctgtcaaccaggctgttttagctttatttgctgcaaggaaagtttcaggaatagtagtcaacattgggtttaaccagacatctattgttccaattctctacggtaaagtcatgcaccaagtaggtgtggaagttgtgggaattggagcattgaagcttacaggattccttaaggagcagatgcaacagaagaatatttattttgggtcactttacactgtgcggactctgaaagagaacctttgttatattgcacttgattatgaagctgaactatccaaagataccaacgcatcttttcagatcgggtctgaaggttgctttacactttcagaagagcgctttaaaacaggagagattttgttccagcctcgcattgcaggagtgcgtgctatgggtttacagaatgctgtggcgctgtgcatggagcactgccatgacgctgaattaatggttgatgatagctggtacaaaacagtagttttgggctggggggaagtgcatgtttgcctggattagcagaaagattagagaagggagtgtgtgaacttcttccctcatgcatgagtaatggaatcagagtacttcctcccccatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="101236" stop="106015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101373" g_stop="101374" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101375" i_stop="101536" i_length="162">
            <donor d_prob="0.924" d_score="0.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101537" g_stop="101604" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="70" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101605" i_stop="102164" i_length="560">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102165" g_stop="102226" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="132" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102227" i_stop="102553" i_length="327">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102554" g_stop="102651" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="230" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102652" i_stop="103361" i_length="710">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103362" g_stop="103443" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="312" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="103444" i_stop="103900" i_length="457">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103901" g_stop="104043" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="455" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104044" i_stop="104741" i_length="698">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104742" g_stop="104890" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="604" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104891" i_stop="105330" i_length="440">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="105331" g_stop="105464" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="740" r_length="136" r_score="0.970"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="105465" i_stop="105637" i_length="173">
            <donor d_prob="0.986" d_score="0.92"/>
            <acceptor a_prob="0.830" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="105638" g_stop="105715" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="818" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E261487" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101373" e_stop="101374"/>
          <exon e_start="101537" e_stop="101604"/>
          <exon e_start="102165" e_stop="102226"/>
          <exon e_start="102554" e_stop="102651"/>
          <exon e_start="103362" e_stop="103443"/>
          <exon e_start="103901" e_stop="104043"/>
          <exon e_start="104742" e_stop="104890"/>
          <exon e_start="105331" e_stop="105464"/>
          <exon e_start="105638" e_stop="105715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGAGCTTTCTTATGAGTTAACAGTTGTAGTTGTTAATTTGTGAAAATCACTTGCATTTTTGACTATTTGAGGCTTTTTTTGTTGTTTTAACTACTTGTATTGTTCCATGTGCTCGGCAAATTCTCACCCTAATCCTTCCTGAAAAATTGTACCATTGACAGGAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAGGTTTGTGTTCCGTTCATTTTTGGTGTCATTTTACATTGGTCCCATATGACAACATCCACCTAAACCAACATCCATTGTTGAGCAATCTAAACAGGTTTTTGGTTCTCAAACATAATTTGATTTTCATAAAATGCTTTTTAACACCATATAACAGGCCTCTACGATATTTTTTACATTATTAATTGATTGTAATACGGACATTTGGTTGGCAAAGAAGAATCTGCATCAAAGTTTTATCTATGAAAGGACTCTCTGTATCATTATGTTGTCAATGTGGCACATATCCTGATTGTTTATCATATAATTCACTAATAAGATTTCCTCTATTCATATAATAAATCACCAGTTTTACCCACTTAAGAGAGCAAAAGGTATAAAGGGCTGGAATCACAATGACTTCCAGAATTTGACTAAAACACCTCGCATCTTTTTTAGAGTACTACCGTATAGCTCCCTACAAACCAGAACTAGAAGATAAGATATGAGCTTGTTCCTTAGACCCAAGGTTGCTGGAATCCTTTTATAAATTTCTCTCTTCTGCTGTTATGGATTCTTTGCAGGATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCGATTTGCCATTATGATGGTCAGTTTCTATTTGGGCGTTGCTGAAAATCCAGTCAAATTTCTGTAAATATAACGTATCAACGACTCAATTTGTTGTTTAGAGGGCAAATATTATTTCACAATATATGCATGTGTCCATTTTTACTTGATGAATCAGCTCATGCAACTCTATTTTTGAACATTCTTCCATTTGACTTTTGAGCAAGAGGGTAAGGTGCTAAAAGGTTTGAATAGTTATCTCACTCAATTAAATCTTCAACTACTAAGAAGTGAGCATAGTAAGATCTTTTCAGTGCACCAAACCAAGGCCTTCCTTTTTCTTTCTAACTTCTCTTTACCTATACAGATACTGAATCTGATAAAGCAGCTAGAACGCAGTTAAAAGACGCGATCCATTCTGCATTATTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGTAGTACTTATTCATTTCCTTCAACTTATGTTGGATTCCCGGAGGTGATTAAAGTTGTTAGTTTTGATAATCTTGGTTGTTCTTTTAAAAGTTCTAAGCTCGTAGCAAAACTTTGTTAGATAACAATCTTGGTTGTACTCTTAGAAGTTCTAAGCTCATAGAAGAACTTTGTTAGATTGAGGAAGAAAAAACATTTATGTCATTGTTGAGCGACATTTATGAACATGTTACATATAAAGCAGAATCTGTCCTTTCATAAGCTAGTGTACATCTACAGATAAGCTTTTCTTTCAACAGGGGGACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTATTTAATGGTCATGGACTGTTTTCAGTCAAATAGCCCCACTTCTCACTTTCCACTAATAATATCTTAAACATATTTGACTAACTAATGAAGTACTTGATGCTTTATACTGTTAATGGCAAAAACTAAACATTAATAACATGGGGAGAGAAAATGATCAAAATGTCACTAACTTGGCAAACTTTTCCTGTTCTCTTTCTAAGATTGTATTATACATTACCACGATTCTTCCAAAGTTTTAGACATAATCTGATTTTGGATTTATAATAGTATTATGATGTCTTTCTTTCAAAAACTATAGGCTGTTTTAGCTTTATTTGCTGCAAGGAAAGTTTCAGGAATAGTAGTCAACATTGGGTTTAACCAGACATCTATTGTTCCAAGTAAGTTTTTTATTCATGTACTGGACTTATGGTTCTTGTTTGACTTTATTGTATACTTGTTTTTGTAGAACTCATTCATTTTTAATTCTTTGAACTGTGAAAGTTTTTTTTTTGTTTTTTGAGTTGCTAGTAGGATATTTAGAAACTGAGTTTGTATTCTCCAGCTTTCTGAGTTAATCAGCGGTGACCAGACAACCCCTGAGATGAATCACAGATGGGTTCCAATGTTTCTTGTTAAACTAATTTCATCTTACATTTGCTTTACTCCTTTTAAATTACCTTATCAAAAAGAAAGTTTGTGCTCTCTAATTGTTTATTCTTTCTGATGATTTAATTTACTCTTAAATTTCTTCATGAACAACGTACATGGATTGCATGTTTTTATTTCTCTTCGTGTCTGCAATTTGATTGCATTGTTTCAATAATTTATGTGTAGCCACTTTTTGGTCTTTTACAGTTCTCTACGGTAAAGTCATGCACCAAGTAGGTGTGGAAGTTGTGGGAATTGGAGCATTGAAGCTTACAGGATTCCTTAAGGAGCAGATGCAACAGAAGAATATTTATTTTGGGTCACTTTACACTGTGCGGACTCTGAAAGAGGTATCAACTTTCTGTCATAGAACATTTAGGGTGGGAAGGAAGCGGGTTTCACTTAGACATGATTCTTTGCACTATTTCTACCTTGCAAGTGAAAAGTTACTGAATCACTTCAAAAATATGCCGTGGTAACATTTTTGTTACTGGAAACCATTTCGTTGTACATAAAATTTTGAATTGCCGCGTCCCTCTACTGCCACATCTAGATACTAACAATCTTGAGAAGTGCTTGGTCAGATAATCATAGCTCCAGCACTACTGCATATGCACTAGCTGCTGATAACCTCAATAAACCATTAAATGCATATCTTAGTTGTGTGAGTTCTTTGTGACTTTCTTCTTGACTACACATTGTCGAATTACAATAATCTGTAAAGTTTGCAAAGTAATTTAAGTTCTAAGTTTTCCAGAAATTTATGGTATCTGAAGAGGAAAATGTGATGAACAAATTTAAGAGTTATTGCAGATCTTCTGCTTCACTTTTTCACTATATTTTGTTTATTTAAAAATAAAGATGTTATTAGTGTACAATTTCTCTGTTATTTTTATCTTAGTAACATAAATCATGTTAGATTCAGTTAGTTTTGATCCTGTGACAAACATAGACTTGAAAAGCCTAGCTGCATGAGAGTTACGGTTACTTTTAATTTCTTAGTGATGTTTTCGAGTATTTTCTGAGGTCCATTTGGTCCGTATTGCAGAACCTTTGTTATATTGCACTTGATTATGAAGCTGAACTATCCAAAGATACCAACGCATCTTTTCAGATCGGGTCTGAAGGTTGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGTGTACGTTCATATTACCTTATTTGGACTTTTAGTAAGACTATTGAACAACTCCAGTTTCAATTACTTCCCTTAGGGCATAAAGGCCTTTTAAAAAACTGGAGTAGATCCTGCACATGACAAAGTGAATTTGGACTATGTAGTCAATTGGAACCTTGTTGCATCAGGTCTTTCCTGAAACTTATTTTCTTAAATGCGAATGGAGAGACAGATTTGTACTCAGGGCGGGTGGGGGCAGTTCTAGACATCGTATTCTCATTTTGAGTCTACACTCTACTATGGTCAACTGATGATGCCGGTTTCTTGACTTATATCATTTAGACAAAGTGGTGTTTTTGTGGATGCAACTGGTGAAACACAACTGACCCCCACCCCCCAATTACCTCAAAAAAGAACAAGGATCTGTAGTATGGAAAATTAGTAGATTTGCGGTCTTGTTTCAGGCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTT-GGCT-GGGGGAAGTGCATGTTTGCCTGGATTAGCAGGTGAATTGCAACTGATGCTCTTTTTCCCTAGATAATGTATCTGATGGAATCATGTGTTTGTACATGTTCTTCTAATTTAGGAAAGTAAAGATGAGAAAGTGTTAATAGACGAAATAAAGAAGAAATGCTATCTTCAAGGGAAGTACTGATTTTTTTTATTATGAACATTGCAGAAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATG</genome_strand>
        <mrna_strand>TG..................................................................................................................................................................GAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCGATTTGCCATTATGATG.......................................................................................................................................................................................................................................................................................................................................ATACTGAATCTGATAAAGCAGCTAGAACGCAGTTAAAAGACGCGATCCATTCTGCATTATTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTTTAGCTTTATTTGCTGCAAGGAAAGTTTCAGGAATAGTAGTCAACATTGGGTTTAACCAGACATCTATTGTTCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTACGGTAAAGTCATGCACCAAGTAGGTGTGGAAGTTGTGGGAATTGGAGCATTGAAGCTTACAGGATTCCTTAAGGAGCAGATGCAACAGAAGAATATTTATTTTGGGTCACTTTACACTGTGCGGACTCTGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTTGTTATATTGCACTTGATTATGAAGCTGAACTATCCAAAGATACCAACGCATCTTTTCAGATCGGGTCTGAAGGTTGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGGCTGGGGGGAAGTGCATGTTTGCCTGGATTAGCAG.............................................................................................................................................................................AAAGATTAGAGAAGGGAGTGTGTGAACTTCTTCCCTCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316721" ref_strand="+" ref_description="SGN-E316721 [cTOB-5-P2]">
      <seq>agcattgaagcttacaggattccttaaggagcagatgcaacagaagaatatttattttgggtcactttacactgtgcggactctgaaagagaacctttgttatattgcacttgattatgaagctgaactatccaaagataccaacgcatcttttcagatcgggtctgaaggttgctttacactttcagaagagcgctttaaaacaggagagattttgttccagcctcgcattgcaggagtgcgtgctatgggtttacagaatgctgtggcgctgtgcatggagcactgccatgacgctgaattaatggttgatgatagctggtacaaaacagtagttttggctgggggaagtgcatgtttgcctggattagcagaaagattacagaaggaagtgtgtgaacttcttcctccatgcatgagtaatggaatcagagtacttcctcccccatatggcgtagattctgcttggtatggggctaagctgattggcaatttgagcaccttccccagttcctggtgtgtgatgaaaaagcaatttcgtcataggtcgagacgcaagtttatgtggtgattactgttgcagtggcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="103653" stop="106561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103953" g_stop="104043" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104044" i_stop="104741" i_length="698">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104742" g_stop="104890" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="240" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104891" i_stop="105330" i_length="440">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105331" g_stop="105464" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="374" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105465" i_stop="105637" i_length="173">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105638" g_stop="105756" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="493" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105757" i_stop="106163" i_length="407">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106164" g_stop="106261" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="591" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E316721" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103953" e_stop="104043"/>
          <exon e_start="104742" e_stop="104890"/>
          <exon e_start="105331" e_stop="105464"/>
          <exon e_start="105638" e_stop="105756"/>
          <exon e_start="106164" e_stop="106261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGAAGCTTACAGGATTCCTTAAGGAGCAGATGCAACAGAAGAATATTTATTTTGGGTCACTTTACACTGTGCGGACTCTGAAAGAGGTATCAACTTTCTGTCATAGAACATTTAGGGTGGGAAGGAAGCGGGTTTCACTTAGACATGATTCTTTGCACTATTTCTACCTTGCAAGTGAAAAGTTACTGAATCACTTCAAAAATATGCCGTGGTAACATTTTTGTTACTGGAAACCATTTCGTTGTACATAAAATTTTGAATTGCCGCGTCCCTCTACTGCCACATCTAGATACTAACAATCTTGAGAAGTGCTTGGTCAGATAATCATAGCTCCAGCACTACTGCATATGCACTAGCTGCTGATAACCTCAATAAACCATTAAATGCATATCTTAGTTGTGTGAGTTCTTTGTGACTTTCTTCTTGACTACACATTGTCGAATTACAATAATCTGTAAAGTTTGCAAAGTAATTTAAGTTCTAAGTTTTCCAGAAATTTATGGTATCTGAAGAGGAAAATGTGATGAACAAATTTAAGAGTTATTGCAGATCTTCTGCTTCACTTTTTCACTATATTTTGTTTATTTAAAAATAAAGATGTTATTAGTGTACAATTTCTCTGTTATTTTTATCTTAGTAACATAAATCATGTTAGATTCAGTTAGTTTTGATCCTGTGACAAACATAGACTTGAAAAGCCTAGCTGCATGAGAGTTACGGTTACTTTTAATTTCTTAGTGATGTTTTCGAGTATTTTCTGAGGTCCATTTGGTCCGTATTGCAGAACCTTTGTTATATTGCACTTGATTATGAAGCTGAACTATCCAAAGATACCAACGCATCTTTTCAGATCGGGTCTGAAGGTTGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGTGTACGTTCATATTACCTTATTTGGACTTTTAGTAAGACTATTGAACAACTCCAGTTTCAATTACTTCCCTTAGGGCATAAAGGCCTTTTAAAAAACTGGAGTAGATCCTGCACATGACAAAGTGAATTTGGACTATGTAGTCAATTGGAACCTTGTTGCATCAGGTCTTTCCTGAAACTTATTTTCTTAAATGCGAATGGAGAGACAGATTTGTACTCAGGGCGGGTGGGGGCAGTTCTAGACATCGTATTCTCATTTTGAGTCTACACTCTACTATGGTCAACTGATGATGCCGGTTTCTTGACTTATATCATTTAGACAAAGTGGTGTTTTTGTGGATGCAACTGGTGAAACACAACTGACCCCCACCCCCCAATTACCTCAAAAAAGAACAAGGATCTGTAGTATGGAAAATTAGTAGATTTGCGGTCTTGTTTCAGGCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAGGTGAATTGCAACTGATGCTCTTTTTCCCTAGATAATGTATCTGATGGAATCATGTGTTTGTACATGTTCTTCTAATTTAGGAAAGTAAAGATGAGAAAGTGTTAATAGACGAAATAAAGAAGAAATGCTATCTTCAAGGGAAGTACTGATTTTTTTTATTATGAACATTGCAGAAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAATGTAAGCTACCTTGCTCAACATAATTTGTTGCAGTAGTTTTACTCTCTTACTCATGCTTATTGGCAATCTTGACTTTGACATGGTTCCTTGAATTGAAAACTTAGTTAATTCCGGTAAAAATCGTATATTAAATTTGCATTTTAAAAGGTAAGAGTTACTCTACCTGCTTAGGTGAACATGCCAATTCTTTCGATTGCCTCTTGGTTAGTTGTTTTTTTGTTCTTAAGAAGTTCTGTATGATTTGACTATGATCTCTTCTTTTGAGGGGATTGGTGTGGAAAAAATGTGTAATTATCATCAAAGTGACAATTAGCATGTACTTGATCATGAATATTTTGTTCTTGCTGTCATTGAACTTTTTATCATATACCTGATTATGATACAAATTCTTTGTCTGTTTACTACAGTTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTG</genome_strand>
        <mrna_strand>AGCATTGAAGCTTACAGGATTCCTTAAGGAGCAGATGCAACAGAAGAATATTTATTTTGGGTCACTTTACACTGTGCGGACTCTGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTTGTTATATTGCACTTGATTATGAAGCTGAACTATCCAAAGATACCAACGCATCTTTTCAGATCGGGTCTGAAGGTTGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAG.............................................................................................................................................................................AAAGATTACAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374026" ref_strand="+" ref_description="SGN-E374026 [TUS-33-E23]">
      <seq>tgctttacactttcagaagagcgctttaaaacaggagagattttgttccagcctcgcattgcaggagtgcgtgctatgggtttacagaatgctgtggcgctgtgcatggagcactgccatgacgctgaattaatggttgatgatagctggtacaaaacagtagttttggctgggggaagtgcatgtttgcctggattagcagaaagattagagaaggaagtgtgtgaacttcttcctccatgcatgagtaatggaatcagagtacttcctcccccatatggcgtagattctgcttggtatggggctaagctgattggcaatttgagcaccttccccagttcctggtgtgtgatgaaaaagcaatttcgtcataggtcgagacgcaagtttatgtggtgattactgttgcagtggcactgcaggtggtattgccaaagatcaagagttttgatgtgcctcgtggctgaagatcaactattgcatcaatgattagatcatttgttaaagatataaatataaggctatttatacatcaagtgtaagactaatttatgtcgttcagtcatgcggatctgctaagcatatgatgtacaaaatcttagattattgaggtagttccaaatggagtgaatatctgtaagttggacttctagacttataataaaggagcacctttttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="104523" stop="106822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104823" g_stop="104890" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104891" i_stop="105330" i_length="440">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105331" g_stop="105464" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="202" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105465" i_stop="105637" i_length="173">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105638" g_stop="105756" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="321" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105757" i_stop="106163" i_length="407">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106164" g_stop="106529" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="687" r_length="366" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E374026" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104823" e_stop="104890"/>
          <exon e_start="105331" e_stop="105464"/>
          <exon e_start="105638" e_stop="105756"/>
          <exon e_start="106164" e_stop="106529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGTGTACGTTCATATTACCTTATTTGGACTTTTAGTAAGACTATTGAACAACTCCAGTTTCAATTACTTCCCTTAGGGCATAAAGGCCTTTTAAAAAACTGGAGTAGATCCTGCACATGACAAAGTGAATTTGGACTATGTAGTCAATTGGAACCTTGTTGCATCAGGTCTTTCCTGAAACTTATTTTCTTAAATGCGAATGGAGAGACAGATTTGTACTCAGGGCGGGTGGGGGCAGTTCTAGACATCGTATTCTCATTTTGAGTCTACACTCTACTATGGTCAACTGATGATGCCGGTTTCTTGACTTATATCATTTAGACAAAGTGGTGTTTTTGTGGATGCAACTGGTGAAACACAACTGACCCCCACCCCCCAATTACCTCAAAAAAGAACAAGGATCTGTAGTATGGAAAATTAGTAGATTTGCGGTCTTGTTTCAGGCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAGGTGAATTGCAACTGATGCTCTTTTTCCCTAGATAATGTATCTGATGGAATCATGTGTTTGTACATGTTCTTCTAATTTAGGAAAGTAAAGATGAGAAAGTGTTAATAGACGAAATAAAGAAGAAATGCTATCTTCAAGGGAAGTACTGATTTTTTTTATTATGAACATTGCAGAAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAATGTAAGCTACCTTGCTCAACATAATTTGTTGCAGTAGTTTTACTCTCTTACTCATGCTTATTGGCAATCTTGACTTTGACATGGTTCCTTGAATTGAAAACTTAGTTAATTCCGGTAAAAATCGTATATTAAATTTGCATTTTAAAAGGTAAGAGTTACTCTACCTGCTTAGGTGAACATGCCAATTCTTTCGATTGCCTCTTGGTTAGTTGTTTTTTTGTTCTTAAGAAGTTCTGTATGATTTGACTATGATCTCTTCTTTTGAGGGGATTGGTGTGGAAAAAATGTGTAATTATCATCAAAGTGACAATTAGCATGTACTTGATCATGAATATTTTGTTCTTGCTGTCATTGAACTTTTTATCATATACCTGATTATGATACAAATTCTTTGTCTGTTTACTACAGTTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAGGTTATG</genome_strand>
        <mrna_strand>TGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAG.............................................................................................................................................................................AAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296022" ref_strand="+" ref_description="SGN-E296022 [cLET-27-D9]">
      <seq>tgctttacactttcagaagagcgctttaaaacaggagagattttgttccagcctcgcattgcaggagtgcgtgctatgggtttacagaatgctgtggcgctgtgcatggagcactgccatgacgctgaattaatggttgatgatagctggtacaaaacagtagttttggctgggggaagtgcatgtttgcctggattagcagaaagattagagaaggaagtgtgtgaacttcttcctccatgcatgagtaatggaatcagagtacttcctcccccatatggcgtagattctgcttggtatggggctaagctgattggcaatttgagcaccttccccagttcctggtgtgtgatgaaaaagcaatttcgtcataggtcgagacgcaagtttatgtggtgattactgttgcagtggcactgcaggtggtattgccaaagatcaagagttttgatgtgcctcgtggctgaagatcaactattgcatcaatgattagatcatttgttaaagatataaatataaggctatttatacatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="104523" stop="106678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104823" g_stop="104890" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104891" i_stop="105330" i_length="440">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105331" g_stop="105464" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="202" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105465" i_stop="105637" i_length="173">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105638" g_stop="105756" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="321" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105757" i_stop="106163" i_length="407">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106164" g_stop="106378" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="536" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E296022" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104823" e_stop="104890"/>
          <exon e_start="105331" e_stop="105464"/>
          <exon e_start="105638" e_stop="105756"/>
          <exon e_start="106164" e_stop="106378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGTGTACGTTCATATTACCTTATTTGGACTTTTAGTAAGACTATTGAACAACTCCAGTTTCAATTACTTCCCTTAGGGCATAAAGGCCTTTTAAAAAACTGGAGTAGATCCTGCACATGACAAAGTGAATTTGGACTATGTAGTCAATTGGAACCTTGTTGCATCAGGTCTTTCCTGAAACTTATTTTCTTAAATGCGAATGGAGAGACAGATTTGTACTCAGGGCGGGTGGGGGCAGTTCTAGACATCGTATTCTCATTTTGAGTCTACACTCTACTATGGTCAACTGATGATGCCGGTTTCTTGACTTATATCATTTAGACAAAGTGGTGTTTTTGTGGATGCAACTGGTGAAACACAACTGACCCCCACCCCCCAATTACCTCAAAAAAGAACAAGGATCTGTAGTATGGAAAATTAGTAGATTTGCGGTCTTGTTTCAGGCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAGGTGAATTGCAACTGATGCTCTTTTTCCCTAGATAATGTATCTGATGGAATCATGTGTTTGTACATGTTCTTCTAATTTAGGAAAGTAAAGATGAGAAAGTGTTAATAGACGAAATAAAGAAGAAATGCTATCTTCAAGGGAAGTACTGATTTTTTTTATTATGAACATTGCAGAAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAATGTAAGCTACCTTGCTCAACATAATTTGTTGCAGTAGTTTTACTCTCTTACTCATGCTTATTGGCAATCTTGACTTTGACATGGTTCCTTGAATTGAAAACTTAGTTAATTCCGGTAAAAATCGTATATTAAATTTGCATTTTAAAAGGTAAGAGTTACTCTACCTGCTTAGGTGAACATGCCAATTCTTTCGATTGCCTCTTGGTTAGTTGTTTTTTTGTTCTTAAGAAGTTCTGTATGATTTGACTATGATCTCTTCTTTTGAGGGGATTGGTGTGGAAAAAATGTGTAATTATCATCAAAGTGACAATTAGCATGTACTTGATCATGAATATTTTGTTCTTGCTGTCATTGAACTTTTTATCATATACCTGATTATGATACAAATTCTTTGTCTGTTTACTACAGTTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAA</genome_strand>
        <mrna_strand>TGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAG.............................................................................................................................................................................AAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300637" ref_strand="+" ref_description="SGN-E300637 [cLET-45-L3]">
      <seq>tgctttacactttcagaagagcgctttaaaacaggagagattttgttccagcctcgcattgcaggagtgcgtgctatgggtttacagaatgctgtggcgctgtgcatggagcactgccatgacgctgaattaatggttgatgatagctggtacaaaacagtagttttggctgggggaagtgcatgtttgcctggattagcagaaagattagagaaggaagtgtgtgaacttcttcctccatgcatgagtaatggaatcagagtacttcctcccccatatggcgtagattctgcttggtatggggctaagctgattggcaatttgagcaccttccccagttcctggtgtgtgatgaaaaagcaatttcgtcataggtcgagacgcaagtttatgtggtgattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="104523" stop="106546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104823" g_stop="104890" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104891" i_stop="105330" i_length="440">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105331" g_stop="105464" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="202" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105465" i_stop="105637" i_length="173">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105638" g_stop="105756" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="321" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105757" i_stop="106163" i_length="407">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106164" g_stop="106246" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="404" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E300637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104823" e_stop="104890"/>
          <exon e_start="105331" e_stop="105464"/>
          <exon e_start="105638" e_stop="105756"/>
          <exon e_start="106164" e_stop="106246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGTGTACGTTCATATTACCTTATTTGGACTTTTAGTAAGACTATTGAACAACTCCAGTTTCAATTACTTCCCTTAGGGCATAAAGGCCTTTTAAAAAACTGGAGTAGATCCTGCACATGACAAAGTGAATTTGGACTATGTAGTCAATTGGAACCTTGTTGCATCAGGTCTTTCCTGAAACTTATTTTCTTAAATGCGAATGGAGAGACAGATTTGTACTCAGGGCGGGTGGGGGCAGTTCTAGACATCGTATTCTCATTTTGAGTCTACACTCTACTATGGTCAACTGATGATGCCGGTTTCTTGACTTATATCATTTAGACAAAGTGGTGTTTTTGTGGATGCAACTGGTGAAACACAACTGACCCCCACCCCCCAATTACCTCAAAAAAGAACAAGGATCTGTAGTATGGAAAATTAGTAGATTTGCGGTCTTGTTTCAGGCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAGGTGAATTGCAACTGATGCTCTTTTTCCCTAGATAATGTATCTGATGGAATCATGTGTTTGTACATGTTCTTCTAATTTAGGAAAGTAAAGATGAGAAAGTGTTAATAGACGAAATAAAGAAGAAATGCTATCTTCAAGGGAAGTACTGATTTTTTTTATTATGAACATTGCAGAAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAATGTAAGCTACCTTGCTCAACATAATTTGTTGCAGTAGTTTTACTCTCTTACTCATGCTTATTGGCAATCTTGACTTTGACATGGTTCCTTGAATTGAAAACTTAGTTAATTCCGGTAAAAATCGTATATTAAATTTGCATTTTAAAAGGTAAGAGTTACTCTACCTGCTTAGGTGAACATGCCAATTCTTTCGATTGCCTCTTGGTTAGTTGTTTTTTTGTTCTTAAGAAGTTCTGTATGATTTGACTATGATCTCTTCTTTTGAGGGGATTGGTGTGGAAAAAATGTGTAATTATCATCAAAGTGACAATTAGCATGTACTTGATCATGAATATTTTGTTCTTGCTGTCATTGAACTTTTTATCATATACCTGATTATGATACAAATTCTTTGTCTGTTTACTACAGTTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACT</genome_strand>
        <mrna_strand>TGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAG.............................................................................................................................................................................AAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374025" ref_strand="+" ref_description="SGN-E374025 [TUS-33-E23](-)">
      <seq>ctttacactttcagaagagcgctttaaaacaggagagattttgttccagcctcgcattgcaggagtgcgtgctatgggtttacagaatgctgtggcgctgtgcatggagcactgccatgacgctgaattaatggttgatgatagctggtacaaaacagtagttttggctgggggaagtgcatgtttgcctggattagcagaaagattagagaaggaagtgtgtgaacttcttcctccatgcatgagtaatggaatcagagtacttcctcccccatatggcgtagattctgcttggtatggggctaagctgattggcaatttgagcaccttccccagttcctggtgtgtgatgaaaaagcaatttcgtcataggtcgagacgcaagtttatgtggtgattactgttgcagtggcactgcaggtggtattgccaaagatcaagagttttgatgtgcctcgtggctgaagatcaactattgcatcaatgattagatcatttgttaaagatataaatataaggctatttatacatcaagtgtaagactaatttatgtcgttcagtcatgcggatctgctaagcatatgatgtacaaaatcttagattattgaggtagttccaaatggagtgaatatctgtaagttggacttctagacttataataaaggagcacctttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="104525" stop="106822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104825" g_stop="104890" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104891" i_stop="105330" i_length="440">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105331" g_stop="105464" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="200" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105465" i_stop="105637" i_length="173">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105638" g_stop="105756" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="319" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105757" i_stop="106163" i_length="407">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106164" g_stop="106523" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="679" r_length="360" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E374025" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104825" e_stop="104890"/>
          <exon e_start="105331" e_stop="105464"/>
          <exon e_start="105638" e_stop="105756"/>
          <exon e_start="106164" e_stop="106523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGTGTACGTTCATATTACCTTATTTGGACTTTTAGTAAGACTATTGAACAACTCCAGTTTCAATTACTTCCCTTAGGGCATAAAGGCCTTTTAAAAAACTGGAGTAGATCCTGCACATGACAAAGTGAATTTGGACTATGTAGTCAATTGGAACCTTGTTGCATCAGGTCTTTCCTGAAACTTATTTTCTTAAATGCGAATGGAGAGACAGATTTGTACTCAGGGCGGGTGGGGGCAGTTCTAGACATCGTATTCTCATTTTGAGTCTACACTCTACTATGGTCAACTGATGATGCCGGTTTCTTGACTTATATCATTTAGACAAAGTGGTGTTTTTGTGGATGCAACTGGTGAAACACAACTGACCCCCACCCCCCAATTACCTCAAAAAAGAACAAGGATCTGTAGTATGGAAAATTAGTAGATTTGCGGTCTTGTTTCAGGCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAGGTGAATTGCAACTGATGCTCTTTTTCCCTAGATAATGTATCTGATGGAATCATGTGTTTGTACATGTTCTTCTAATTTAGGAAAGTAAAGATGAGAAAGTGTTAATAGACGAAATAAAGAAGAAATGCTATCTTCAAGGGAAGTACTGATTTTTTTTATTATGAACATTGCAGAAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAATGTAAGCTACCTTGCTCAACATAATTTGTTGCAGTAGTTTTACTCTCTTACTCATGCTTATTGGCAATCTTGACTTTGACATGGTTCCTTGAATTGAAAACTTAGTTAATTCCGGTAAAAATCGTATATTAAATTTGCATTTTAAAAGGTAAGAGTTACTCTACCTGCTTAGGTGAACATGCCAATTCTTTCGATTGCCTCTTGGTTAGTTGTTTTTTTGTTCTTAAGAAGTTCTGTATGATTTGACTATGATCTCTTCTTTTGAGGGGATTGGTGTGGAAAAAATGTGTAATTATCATCAAAGTGACAATTAGCATGTACTTGATCATGAATATTTTGTTCTTGCTGTCATTGAACTTTTTATCATATACCTGATTATGATACAAATTCTTTGTCTGTTTACTACAGTTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAG</genome_strand>
        <mrna_strand>CTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAG.............................................................................................................................................................................AAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253185" ref_strand="+" ref_description="SGN-E253185 [cLEG-26-M12]">
      <seq>gcgaatggagagacagatttgtactcagggcgggtgggggcagttctagacatcgtattctcattttgagtctacactctactatggtcaactgatgatgccggtttcttgacttatatcatttagacaaagtggtgtttttgtggatgcaactggtgaaacacaactgacccccaccccccaattacctcaaaaaagaacaaggatctgtagtatggaaaattagtagatttgcggtcttgtttcaagcgtgctatgggtttacagaatgctgtggcgctgtgcatggagcactgccatgacgctgaattaatggttgatgatagctggtacaaaacagtagttttggctgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="104783" stop="105737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105083" g_stop="105437" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E253185" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105083" e_stop="105437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATGGAGAGACAGATTTGTACTCAGGGCGGGTGGGGGCAGTTCTAGACATCGTATTCTCATTTTGAGTCTACACTCTACTATGGTCAACTGATGATGCCGGTTTCTTGACTTATATCATTTAGACAAAGTGGTGTTTTTGTGGATGCAACTGGTGAAACACAACTGACCCCCACCCCCCAATTACCTCAAAAAAGAACAAGGATCTGTAGTATGGAAAATTAGTAGATTTGCGGTCTTGTTTCAGGCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGG</genome_strand>
        <mrna_strand>GCGAATGGAGAGACAGATTTGTACTCAGGGCGGGTGGGGGCAGTTCTAGACATCGTATTCTCATTTTGAGTCTACACTCTACTATGGTCAACTGATGATGCCGGTTTCTTGACTTATATCATTTAGACAAAGTGGTGTTTTTGTGGATGCAACTGGTGAAACACAACTGACCCCCACCCCCCAATTACCTCAAAAAAGAACAAGGATCTGTAGTATGGAAAATTAGTAGATTTGCGGTCTTGTTTCAAGCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282750" ref_strand="+" ref_description="SGN-E282750 [cLER-15-N22]">
      <seq>ttgtactcagggcgggtgggggcagttctagacatcgtattctcattttgagtctacactctactatggtcaactgatgatgccggtttcttgacttatatcatttagacaaagtggtgtttttgtggatgcaactggtgaaacacaactgacccccaccccccaattacctcaaaaaagaacaaggatctgtagtatggaaaattagtagatttgcggtcttgtttcaggcgtgctatgggtttacagaatgctgtggcgctgtgcatggagcactgccatgacgctgaattaatggttgatgatagctggtacaaaacagtagttttggctgggggaagtgcatgtttgcctggattagcagaaagattagagaaggaagtgtgtgaacttcttcctccatgcatgagtaatggaatcagagtacttcctcccccatatggcgtagattctgcttggtatggggctaagctgattggcaatttgagcaccttccccagttcctggtgtgtgatgaaaaaacaatttcgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="104801" stop="106513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105101" g_stop="105464" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105465" i_stop="105637" i_length="173">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105638" g_stop="105756" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="483" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105757" i_stop="106163" i_length="407">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106164" g_stop="106213" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="533" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E282750" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105101" e_stop="105464"/>
          <exon e_start="105638" e_stop="105756"/>
          <exon e_start="106164" e_stop="106213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTACTCAGGGCGGGTGGGGGCAGTTCTAGACATCGTATTCTCATTTTGAGTCTACACTCTACTATGGTCAACTGATGATGCCGGTTTCTTGACTTATATCATTTAGACAAAGTGGTGTTTTTGTGGATGCAACTGGTGAAACACAACTGACCCCCACCCCCCAATTACCTCAAAAAAGAACAAGGATCTGTAGTATGGAAAATTAGTAGATTTGCGGTCTTGTTTCAGGCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAGGTGAATTGCAACTGATGCTCTTTTTCCCTAGATAATGTATCTGATGGAATCATGTGTTTGTACATGTTCTTCTAATTTAGGAAAGTAAAGATGAGAAAGTGTTAATAGACGAAATAAAGAAGAAATGCTATCTTCAAGGGAAGTACTGATTTTTTTTATTATGAACATTGCAGAAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAATGTAAGCTACCTTGCTCAACATAATTTGTTGCAGTAGTTTTACTCTCTTACTCATGCTTATTGGCAATCTTGACTTTGACATGGTTCCTTGAATTGAAAACTTAGTTAATTCCGGTAAAAATCGTATATTAAATTTGCATTTTAAAAGGTAAGAGTTACTCTACCTGCTTAGGTGAACATGCCAATTCTTTCGATTGCCTCTTGGTTAGTTGTTTTTTTGTTCTTAAGAAGTTCTGTATGATTTGACTATGATCTCTTCTTTTGAGGGGATTGGTGTGGAAAAAATGTGTAATTATCATCAAAGTGACAATTAGCATGTACTTGATCATGAATATTTTGTTCTTGCTGTCATTGAACTTTTTATCATATACCTGATTATGATACAAATTCTTTGTCTGTTTACTACAGTTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCA</genome_strand>
        <mrna_strand>TTGTACTCAGGGCGGGTGGGGGCAGTTCTAGACATCGTATTCTCATTTTGAGTCTACACTCTACTATGGTCAACTGATGATGCCGGTTTCTTGACTTATATCATTTAGACAAAGTGGTGTTTTTGTGGATGCAACTGGTGAAACACAACTGACCCCCACCCCCCAATTACCTCAAAAAAGAACAAGGATCTGTAGTATGGAAAATTAGTAGATTTGCGGTCTTGTTTCAGGCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAG.............................................................................................................................................................................AAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAACAATTTCGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319347" ref_strand="+" ref_description="SGN-E319347 [cTOB-15-I17]">
      <seq>gtttacagaatgctgtggcgctgtgcatggagcactgccatgacgctgaattaatggttgatgatagctggtacaaaacagtagttttggctgggggaagtgcatgtttgcctggattagcagaaagattagagaaggaagtgtgtgaacttcttcctccatgcatgagtaatggaatcagagtacttcctcccccatatggcgtagattctgcttggtatggggctaagctgattggcaatttgagcaccttccccagttcctggtgtgtgatgaaaaagcaatttcgtcataggtcgagacgcaagtttatgtggtgattactgttgcagtggcactgcaggtggtattgccaaagatcaagagttttgatgtgcctcgtggctgaagatcaactattgcatcaatgattagatcatttgttaaagatataaatataaggctatttatacatcaagtgtaagactaatttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="105042" stop="106696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105342" g_stop="105464" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105465" i_stop="105637" i_length="173">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105638" g_stop="105756" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="242" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105757" i_stop="106163" i_length="407">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106164" g_stop="106396" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="475" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E319347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105342" e_stop="105464"/>
          <exon e_start="105638" e_stop="105756"/>
          <exon e_start="106164" e_stop="106396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAGGTGAATTGCAACTGATGCTCTTTTTCCCTAGATAATGTATCTGATGGAATCATGTGTTTGTACATGTTCTTCTAATTTAGGAAAGTAAAGATGAGAAAGTGTTAATAGACGAAATAAAGAAGAAATGCTATCTTCAAGGGAAGTACTGATTTTTTTTATTATGAACATTGCAGAAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAATGTAAGCTACCTTGCTCAACATAATTTGTTGCAGTAGTTTTACTCTCTTACTCATGCTTATTGGCAATCTTGACTTTGACATGGTTCCTTGAATTGAAAACTTAGTTAATTCCGGTAAAAATCGTATATTAAATTTGCATTTTAAAAGGTAAGAGTTACTCTACCTGCTTAGGTGAACATGCCAATTCTTTCGATTGCCTCTTGGTTAGTTGTTTTTTTGTTCTTAAGAAGTTCTGTATGATTTGACTATGATCTCTTCTTTTGAGGGGATTGGTGTGGAAAAAATGTGTAATTATCATCAAAGTGACAATTAGCATGTACTTGATCATGAATATTTTGTTCTTGCTGTCATTGAACTTTTTATCATATACCTGATTATGATACAAATTCTTTGTCTGTTTACTACAGTTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATG</genome_strand>
        <mrna_strand>GTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAG.............................................................................................................................................................................AAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325798" ref_strand="-" ref_description="SGN-E325798 [cTOC-12-C24]">
      <seq>atggttgatgatagctggtacaaaacagtagttttggttggggaaagtgcatgtttgcctggattagcagaaagattagagaaggaagtgtgtgaacttcttcctccatgcatgagtaatggaatcagagtacttcctcccccatatggcgtagattctgcttggtatggggctaagctgattggcaatttgagcaccttccccagttcctggtgtgtgatgaaaaagcaatttcgtcataggtcgagacgcaagtttatgtggtgattactgttgcagtggcactgcaggtggtattgccaaagatcaagagttttgatgtgcctcgtggctgaagatcaactattgcatcaatgattagatcatttgttaaagatataaatataaggctatttatacatcaagtgtaagactaatttatgtcgttcagtcatgcggatctgctaagcatatgatgtacaaaatcttagattattgaggtagttccaaatggagtgaatatctgtaagttggactcctacccttataataaaggagcacctttttcaggttatgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="105095" stop="106833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105395" g_stop="105464" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105465" i_stop="105637" i_length="173">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105638" g_stop="105756" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="189" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105757" i_stop="106163" i_length="407">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106164" g_stop="106533" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="559" r_length="370" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E325798" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325798" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105395" e_stop="105464"/>
          <exon e_start="105638" e_stop="105756"/>
          <exon e_start="106164" e_stop="106533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAGGTGAATTGCAACTGATGCTCTTTTTCCCTAGATAATGTATCTGATGGAATCATGTGTTTGTACATGTTCTTCTAATTTAGGAAAGTAAAGATGAGAAAGTGTTAATAGACGAAATAAAGAAGAAATGCTATCTTCAAGGGAAGTACTGATTTTTTTTATTATGAACATTGCAGAAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAATGTAAGCTACCTTGCTCAACATAATTTGTTGCAGTAGTTTTACTCTCTTACTCATGCTTATTGGCAATCTTGACTTTGACATGGTTCCTTGAATTGAAAACTTAGTTAATTCCGGTAAAAATCGTATATTAAATTTGCATTTTAAAAGGTAAGAGTTACTCTACCTGCTTAGGTGAACATGCCAATTCTTTCGATTGCCTCTTGGTTAGTTGTTTTTTTGTTCTTAAGAAGTTCTGTATGATTTGACTATGATCTCTTCTTTTGAGGGGATTGGTGTGGAAAAAATGTGTAATTATCATCAAAGTGACAATTAGCATGTACTTGATCATGAATATTTTGTTCTTGCTGTCATTGAACTTTTTATCATATACCTGATTATGATACAAATTCTTTGTCTGTTTACTACAGTTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAGGTTATGTGTT</genome_strand>
        <mrna_strand>ATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGTTGGGGAAAGTGCATGTTTGCCTGGATTAGCAG.............................................................................................................................................................................AAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTCCTACCCTTATAATAAAGGAGCACCTTTTTCAGGTTATGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223960" ref_strand="+" ref_description="SGN-E223960 [cLEL-19-L17](-)">
      <seq>gctgattggcaatttgagcaccttccccagttcctggtgtgtgatgaaaaagcaatttcgtcataggtcgagacgcaagtttatgtggtgattactgttgcagtggcactgcaggtggtattgccaaagatcaagagttttgatgtgcctcgtggctgaagatcaactattgcatcaatgattagatcatttgttaaagatataaatataaggctatttatacatcaagtgtaagactaatttatgtcgttcagtcatgcggatctgctaagcatatgatgtacaaaatcttagattattgaggtagttccaaatggagtgaatatctgtaagttggacttctagacttataataaaggagcacctttttcaggttatgtgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="105851" stop="106840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106164" g_stop="106540" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="390" r_length="377" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="401"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E223960" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106164" e_stop="106540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAGGTTATGTGTTAATACAA</genome_strand>
        <mrna_strand>TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAGGTTATGTGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223825" ref_strand="+" ref_description="SGN-E223825 [cLEL-19-L17](-)">
      <seq>tggtgtgtgataaaaaagcaatttcgtcataggtcgagacgcaagtttatgtggtgattactgttgcagtggcactgcaggtggtattgccaaagatcaagagttttgatgtgcctcgtggctgaagatcaactattgcatcaatgattagatcatttgttaaagatataaatataaggctatttatacatcaagtgtaagactaatttatgtcgttcagtcatgcggatctgctaagcatatgatgtacaaaatcttagattattgaggtagttccaaatggagtgaatatctgtaagttggacttctagacttataataaaggagcacctttttcaggttatgtgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="105885" stop="106840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106185" g_stop="106540" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="367"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E223825" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106185" e_stop="106540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAGGTTATGTGTTAATACAA</genome_strand>
        <mrna_strand>TGGTGTGTGATAAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAGGTTATGTGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304781" ref_strand="+" ref_description="SGN-E304781 [cLEX-10-E5]">
      <seq>ctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgtagactatcaccgatcctgatgattgcaacagctcttacgggcttcttcttgttgcttctctgaagatctcttcaaggttttggcgtagtttctgtattctttattgtcaaatattgtttgaactccggattttcttctaccatgttaccactgattaacgatcaacaagaaactcctcctcttgtaattcttgatatattacaacagcaaactgttgatacttgtgtattgaaaatgactctccttgctaaaccaaggatctgttaaatattatttcactttgttgtattttgagcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="109570" stop="108513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109270" g_stop="108813" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E304781" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109270" e_stop="108813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGACTCTCCTTGCTAAACCAAGGATCTGTTAAATATTATTTCACTTTGTTGTATTTTGAGCATGAACGATAGTAA</genome_strand>
        <mrna_strand>CTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGACTCTCCTTGCTAAACCAAGGATCTGTTAAATATTATTTCACTTTGTTGTATTTTGAGCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353036" ref_strand="+" ref_description="SGN-E353036 [cTOS-14-B23]">
      <seq>tttgcgtgtccctattcagaattcgtgaatgatttgacaactgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgtagactatcaccgatcctgatgattgcaacagctcttacgggcttcttcttgttgcttctctgaagatctcttcaaggttttggcgtagtttctgtattctttattgtcaaatattgtttgaactccggattttcttctaccatgttaccactgattaacgatcaacaagaaactcctcctcttgtaattcttgatatattacaacagcaaactgttgatacttgtgtattgaaaatgactctccttgctaaaccaaggatctgttaaatattatttcactttgttggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="109620" stop="108535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109320" g_stop="108826" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E353036" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109320" e_stop="108826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGACTCTCCTTGCTAAACCAAGGATCTGTTAAATATTATTTCACTTTGTTGTATTTTGAGCA</genome_strand>
        <mrna_strand>TTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGACTCTCCTTGCTAAACCAAGGATCTGTTAAATATTATTTCACTTTGTTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354858" ref_strand="+" ref_description="SGN-E354858 [cTOS-19-B6]">
      <seq>tttgcgtgtccctattcagaattcgtgaatgatttgacaactgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgtagactatcaccgatcctgatgattgcaacagctcttacgggcttcttcttgttgcttctctgaagatctcttcaaggttttggcgtagtttctgtattctttattgtcaaatattgtttgaactccggattttcttctaccatgttaccactgattaacgatcaacaagaaactcctcctcttgtaattcttgatatattacaacagcaaactgttgatacttgtgtattgaaaatgactctccttgctaaaccaaggatctgttaaatattatttcactttgttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="109620" stop="108535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109320" g_stop="108826" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E354858" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109320" e_stop="108826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGACTCTCCTTGCTAAACCAAGGATCTGTTAAATATTATTTCACTTTGTTGTATTTTGAGCA</genome_strand>
        <mrna_strand>TTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGACTCTCCTTGCTAAACCAAGGATCTGTTAAATATTATTTCACTTTGTTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357855" ref_strand="+" ref_description="SGN-E357855 [cTOS-24-M24]">
      <seq>tttgcgtgtccctattcagaattcgtgaatgatttgacaactgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgtagactatcaccgatcctgatgattgcaacagctcttacgggcttcttcttgttgcttctctgaagatctcttcaaggttttggcgtagtttctgtattctttattgtcaaatattgtttgaactccggattttcttctaccatgttaccactgattaacgatcaacaagaaactcctcctcttgtaattcttgatatattacaacagcaaactgttgatacttgtgtattgaaaatgactctccttgctaaaccaaggatctgttaaatattatttcactttgttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="109620" stop="108535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109320" g_stop="108826" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E357855" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109320" e_stop="108826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGACTCTCCTTGCTAAACCAAGGATCTGTTAAATATTATTTCACTTTGTTGTATTTTGAGCA</genome_strand>
        <mrna_strand>TTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGACTCTCCTTGCTAAACCAAGGATCTGTTAAATATTATTTCACTTTGTTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290468" ref_strand="+" ref_description="SGN-E290468 [cLES-20-L8]">
      <seq>tttttttttttaacagatccttggtttagcaaggagagtcattttcaatacacaagtatcaacagtttgctgttgtaatatatcaagaattacaagaggaggagtttcttgttgatcgttaatcagtggtaacatggtagaagaaaatccggagttcaaacaatatttgacaataaagaatacagaaactacgccaaaaccttgaagagatcttcagagaagcaacaagaagaagcccgtaagagctgttgcaatcatcaggatcggtgatagtctacagctcatatgactattattagcactggcagattcggatgatgcagaatcaggacatggtagcccatttttgtctttattgcactcactggcgaaaagaccaggtgggtacttcccgtgaaggttaatgtagctgaacatggtagaggcacaatcagttgtcaaatcattcacgaattctgaatagggacacgcaaactccgcaagggcttcacaacattgtttggctgggtattttggtcctttgcattgggtagtgaccactgtgtagttttgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="108553" stop="109702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108847" g_stop="109402" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E290468" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108847" e_stop="109402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATATTTAACAGATCCTTGGTTTAGCAAGGAGAGTCATTTTCAATACACAAGTATCAACAGTTTGCTGTTGTAATATATCAAGAATTACAAGAGGAGGAGTTTCTTGTTGATCGTTAATCAGTGGTAACATGGTAGAAGAAAATCCGGAGTTCAAACAATATTTGACAATAAAGAATACAGAAACTACGCCAAAACCTTGAAGAGATCTTCAGAGAAGCAACAAGAAGAAGCCCGTAAGAGCTGTTGCAATCATCAGGATCGGTGATAGTCTACAGCTCATATGACTATTATTAGCACTGGCAGATTCGGATGATGCAGAATCAGGACATGGTAGCCCATTTTTGTCTTTATTGCACTCACTGGCGAAAAGACCAGGTGGGTACTTCCCGTGAAGGTTAATGTAGCTGAACATGGTAGAGGCACAATCAGTTGTCAAATCATTCACGAATTCTGAATAGGGACACGCAAACTCCGCAAGGGCTTCACAACATTGTTTGGCTGGGTATTTTGGTCCTTTGCATTGGGTAGTGACCACTGTGTAGTTTTGAAAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTAACAGATCCTTGGTTTAGCAAGGAGAGTCATTTTCAATACACAAGTATCAACAGTTTGCTGTTGTAATATATCAAGAATTACAAGAGGAGGAGTTTCTTGTTGATCGTTAATCAGTGGTAACATGGTAGAAGAAAATCCGGAGTTCAAACAATATTTGACAATAAAGAATACAGAAACTACGCCAAAACCTTGAAGAGATCTTCAGAGAAGCAACAAGAAGAAGCCCGTAAGAGCTGTTGCAATCATCAGGATCGGTGATAGTCTACAGCTCATATGACTATTATTAGCACTGGCAGATTCGGATGATGCAGAATCAGGACATGGTAGCCCATTTTTGTCTTTATTGCACTCACTGGCGAAAAGACCAGGTGGGTACTTCCCGTGAAGGTTAATGTAGCTGAACATGGTAGAGGCACAATCAGTTGTCAAATCATTCACGAATTCTGAATAGGGACACGCAAACTCCGCAAGGGCTTCACAACATTGTTTGGCTGGGTATTTTGGTCCTTTGCATTGGGTAGTGACCACTGTGTAGTTTTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236206" ref_strand="+" ref_description="SGN-E236206 [cLED-20-D5]">
      <seq>ctgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgtagactatcaccgatcctgatgattgcaacagctcttacgggcttcttcttgttgcttctctgaagatctcttcaaggttttggcgtagtttctgtattctttattgtcaaatattgtttgaactccggattttcttctaccatgttaccactgattaacgatcaacaagaaactcctcctcttgtaattcttgatattttacaacagcaaactgttgatacttgtgtattgaaaatgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="109580" stop="108582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109280" g_stop="108882" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E236206" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109280" e_stop="108882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGACTC</genome_strand>
        <mrna_strand>CTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATTTTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233315" ref_strand="+" ref_description="SGN-E233315 [cLED-9-C9]">
      <seq>ctgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgtagactatcaccgatcctgatgattgcaacagctcttacgggcttcttcttgttgcttctctgaagatctcttcaaggttttggcgtagtttctgtattctttattgtcaaatattgtttgaactccggattttcttctaccatgttaccactgattaacgatcaacaagaaactcctcctcttgtaattcttgatatattacaacagcaaactgttgatacttgtgtattgaaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="109580" stop="108584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109280" g_stop="108884" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E233315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109280" e_stop="108884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGAC</genome_strand>
        <mrna_strand>CTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231285" ref_strand="+" ref_description="SGN-E231285 [cLED-5-J10]">
      <seq>ctgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgtagactatcaccgatcctgatgattgcaacagctcttacgggcttcttcttgttgcttctctgaagatctcttcaaggttttggcgtagtttctgtattctttattgtcaaatattgtttgaactccggattttcttctaccatgttaccactgattaacgatcaacaagaaactcctcctcttgtaattcttgatatattacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="109580" stop="108617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109280" g_stop="108917" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E231285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109280" e_stop="108917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACA</genome_strand>
        <mrna_strand>CTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718262" ref_strand="+" ref_description="SGN-E718262 [FC04AF09]">
      <seq>aatcggccgaattgattttctattttctatttccaatatgaactcaaacttactgtaaacaattagctggcaagaacagagataacctttgttcaaagggaaagagaacagatagatctctttctatttctgtttttttctcaaagatcactttttttctggttctttgttgaaatcttcttccaagaactcatcttttagcttttatattctgatattttagctcattttgctataatggggtgcagatattgtttttcttgtatttttctactgttttctttcttcatttcagcttcagcttcagcttatttatcagatgggatttttgttaatgaaggtttaactgggaggaatctacttcaagccaagaaaccttgtcctatcagcttcgagtttcaaaactacacagtggtcactacccaatgcaaaggaccaaaatacccagccaaacaatgttgtgaagcccttgcggagtttgcgtgtccctattcagaattcgtgaatgatttgacaactgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgtagactatcaccgatcctgatgattgcaacagctcttacgggcttcttcttgttgcttctctgaagatctcttcaaggttttggcgtagtttctgtattctttattgtcaaatattgtttgaactccggattttcttctaccatgttaccactgattaacgatcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="111896" stop="108656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111628" g_stop="111309" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111308" i_stop="111224" i_length="85">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111223" g_stop="111167" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="376" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111166" i_stop="109422" i_length="1745">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109421" g_stop="108956" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="842" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E718262" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111628" e_stop="111309"/>
          <exon e_start="111223" e_stop="111167"/>
          <exon e_start="109421" e_stop="108956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCTCCAGTATGAACTCAAACTTACTGTAAACAATTAGCTGGCAAGAACAGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAGGTTTGTGTTTTTTGTACTGATTTTGTTTTTCCCAATTTGGTTTCTGCTATGAATGTTCTTACATATTTTATATTTTGTTATGCACATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAACGTAAGCTCTTGATCATCATTTTTGGTTTTGTTTGGTGGACTTTGGAGCTAGATTTGTGTATTTTGTTAAGTTCTACTGTAGCTGAATGGTTTGACTAAAGATCTGTGAAGTGGGGTTTGTTCTTTAGGTATATATCTTGTTGAAATTGAAACTAAATTTCTGAAATAGCTGTTGGGTGATCTTGTAATTCAGCCTCTTTTCTTCTGTTTCTGTTTTCTGGGATCTGGATGTGTCATTTTGCCTTACGTTTGAGGTGAGGTGAGAGGAACCCTTTTGCAGTTGAAGATGGCGCTTTTTTGGTTTATCTTTATGCATTATCATTGTTCTTGTTTTTCATTATTCTTCGATTTCTGTTGTTACATGTTGTTCCTTTAGCCTCGATTATCTTATTCTCTTGATGTCGTTTCTACTGCCTCTTTTTTTATCATTCATTGAGTCTGAGGGTGTAGCCGGAAACAGCCTCTCTACCTTTCTCAAGTTAGGGGTAGAGGTAAGGTTTGTGTACGCTCTATCCTCACAAACCAACCTCGCTTGTGGGATTACAGTGAATTATTTGTTGCTGTTTTCTTTGCTATTATGTCTTGGTTATGTTCTTACAGTCAGGTTATGTTTTAACATGCTTGAGTGTCTTTCTAATAAGGAAGAAGTTTTTAAGAAACATGCACTAGTTGTGTTATCCTGTAATTATGGTTAGTAGGTTATTGCAAATACAAGGACAAAACCAAACTTTTTTAGGATTATGAAATGTTTAAATTGAGCAACTTGTGACATTTCCATATAATTTTGTAGTTGATAGCATGTGATAGTTTTGCCAAGTGATTTTTAGTGCTCTGTGCAAAGTTCAGTAAGCAGTACGATGTGCTGCAATCTGCTGCGTATTTCGCATTCTGAAGTTCTGCATAGATTTGGTAGAGATGTTTCTTCCAGTTTGTTTTGTTGATACTGTGGCCAGGAGTGTCTGTTTGATGATACTCAGCTACGTACGAAGCTATAGGATAGTGCTTGATATGAATGATAACTTTGTTTTCTGGGCCGTGGATCTTCTTGTATGCTTTGTTCATCCACTGATGGAAAATGGAAAGGAATGGTATAAATGTGAAGTACATTATCGAGTTTTGCAGCTTAGGTGGGTATTTAACTACTGTGTGATTGAATTGGTATCTAGGACTACCTATTATATGAGTTGAAATATGCAAACAGAGCTCGTTGATGAGGATAATGTTTAAGATGGTACTGGATATTTTTAAACTTGAGATGAGTCAAATCAAGGACAACACGAAAGACCATAGTTCATCAAGTTCTGCTTATTCTCAGAATTCATATGTTGCCACATGTGTGGTGACTTAAAGCGATTATAATCTCGTTTCCTCCATGCAGCGATTTGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAGGCGGCTGGAATTCGACTCGGTACCTGATGTACTAAAACAGGGAAGTTTTCGTTAATTAGGGGAATTTGACACCGAGTTGCTTGATGACTTGTTTATTTGCTATTGTGAGATGCACATAGTTGTTGCATGTTTGTAACTCACTGATGATGATCACTTTACAATGACCTAGAAGATTTCTGTTTGCTTAAATTTTTTACCCTGAGAGCTTGAAATGCTTGCTGAAGAATGCTTTGCTTCAATATTTATGCAGCTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATTTTCTATTTTCTATT-TCCAATATGAACTCAAACTTACTGTAAACAATTAGCTGGCAAGAACAGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAG.....................................................................................ATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352054" ref_strand="+" ref_description="SGN-E352054 [cTOS-13-H19]">
      <seq>ttctggttctttgttgaaatcttcttccaagaactcatcttttagcttttatattctgatattttagctcattttgctataatggggtgcagatattgtttttcttgtatttttctactgttttctttcttcatttcagcttcagcttcagcttatttatcagatgggatttttgttaatgaaggtttaactgggaggaatctacttcaagccaagaaaccttgtcctatcagcttcgagtttcaaaactacacagtggtcactacccaatgcaaaggaccaaaatacccagccaaacaatgttgtgaagcccttgcggagtttgcgtgtccctattcagaattcgtgaatgatttgacaactgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgtagactatcaccgatcctgatgattgcaacagctcttacgggcttcttcttgttgcttctctgaagatctcttcaaggttttggcgtagtttctgtattctttattgtcaaatattgtttgaactccggattttcttctaccatgttaccactgattaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="111771" stop="108662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111471" g_stop="111309" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111308" i_stop="111224" i_length="85">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111223" g_stop="111167" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="220" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111166" i_stop="109422" i_length="1745">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109421" g_stop="108962" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="680" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E352054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111471" e_stop="111309"/>
          <exon e_start="111223" e_stop="111167"/>
          <exon e_start="109421" e_stop="108962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAGGTTTGTGTTTTTTGTACTGATTTTGTTTTTCCCAATTTGGTTTCTGCTATGAATGTTCTTACATATTTTATATTTTGTTATGCACATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAACGTAAGCTCTTGATCATCATTTTTGGTTTTGTTTGGTGGACTTTGGAGCTAGATTTGTGTATTTTGTTAAGTTCTACTGTAGCTGAATGGTTTGACTAAAGATCTGTGAAGTGGGGTTTGTTCTTTAGGTATATATCTTGTTGAAATTGAAACTAAATTTCTGAAATAGCTGTTGGGTGATCTTGTAATTCAGCCTCTTTTCTTCTGTTTCTGTTTTCTGGGATCTGGATGTGTCATTTTGCCTTACGTTTGAGGTGAGGTGAGAGGAACCCTTTTGCAGTTGAAGATGGCGCTTTTTTGGTTTATCTTTATGCATTATCATTGTTCTTGTTTTTCATTATTCTTCGATTTCTGTTGTTACATGTTGTTCCTTTAGCCTCGATTATCTTATTCTCTTGATGTCGTTTCTACTGCCTCTTTTTTTATCATTCATTGAGTCTGAGGGTGTAGCCGGAAACAGCCTCTCTACCTTTCTCAAGTTAGGGGTAGAGGTAAGGTTTGTGTACGCTCTATCCTCACAAACCAACCTCGCTTGTGGGATTACAGTGAATTATTTGTTGCTGTTTTCTTTGCTATTATGTCTTGGTTATGTTCTTACAGTCAGGTTATGTTTTAACATGCTTGAGTGTCTTTCTAATAAGGAAGAAGTTTTTAAGAAACATGCACTAGTTGTGTTATCCTGTAATTATGGTTAGTAGGTTATTGCAAATACAAGGACAAAACCAAACTTTTTTAGGATTATGAAATGTTTAAATTGAGCAACTTGTGACATTTCCATATAATTTTGTAGTTGATAGCATGTGATAGTTTTGCCAAGTGATTTTTAGTGCTCTGTGCAAAGTTCAGTAAGCAGTACGATGTGCTGCAATCTGCTGCGTATTTCGCATTCTGAAGTTCTGCATAGATTTGGTAGAGATGTTTCTTCCAGTTTGTTTTGTTGATACTGTGGCCAGGAGTGTCTGTTTGATGATACTCAGCTACGTACGAAGCTATAGGATAGTGCTTGATATGAATGATAACTTTGTTTTCTGGGCCGTGGATCTTCTTGTATGCTTTGTTCATCCACTGATGGAAAATGGAAAGGAATGGTATAAATGTGAAGTACATTATCGAGTTTTGCAGCTTAGGTGGGTATTTAACTACTGTGTGATTGAATTGGTATCTAGGACTACCTATTATATGAGTTGAAATATGCAAACAGAGCTCGTTGATGAGGATAATGTTTAAGATGGTACTGGATATTTTTAAACTTGAGATGAGTCAAATCAAGGACAACACGAAAGACCATAGTTCATCAAGTTCTGCTTATTCTCAGAATTCATATGTTGCCACATGTGTGGTGACTTAAAGCGATTATAATCTCGTTTCCTCCATGCAGCGATTTGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAGGCGGCTGGAATTCGACTCGGTACCTGATGTACTAAAACAGGGAAGTTTTCGTTAATTAGGGGAATTTGACACCGAGTTGCTTGATGACTTGTTTATTTGCTATTGTGAGATGCACATAGTTGTTGCATGTTTGTAACTCACTGATGATGATCACTTTACAATGACCTAGAAGATTTCTGTTTGCTTAAATTTTTTACCCTGAGAGCTTGAAATGCTTGCTGAAGAATGCTTTGCTTCAATATTTATGCAGCTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGA</genome_strand>
        <mrna_strand>TTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAG.....................................................................................ATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356197" ref_strand="+" ref_description="SGN-E356197 [cTOS-20-D11]">
      <seq>ttctggttctttgttgaaatcttcttccaagaactcatcttttagcttttatattctgatattttagctcattttgctataatggggtgcagatattgtttttcttgtatttttctactgttttctttcttcatttcagcttcagcttcagcttatttatcagatgggatttttgttaatgaaggtttaactgggaggaatctacttcaagccaagaaaccttgtcctatcagcttcgagtttcaaaactacacagtggtcactacccaatgcaaaggaccaaaatacccagccaaacaatgttgtgaagcccttgcggagtttgcgtgtccctattcagaattcgtgaatgatttgacaactgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgtagactatcaccgatcctgatgattgcaacagctcttacgggcttcttcttggtgcttctctgaagatctcttcaagggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="111771" stop="108741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111471" g_stop="111309" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111308" i_stop="111224" i_length="85">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111223" g_stop="111167" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="220" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111166" i_stop="109422" i_length="1745">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109421" g_stop="109041" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="601" r_length="381" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E356197" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111471" e_stop="111309"/>
          <exon e_start="111223" e_stop="111167"/>
          <exon e_start="109421" e_stop="109041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAGGTTTGTGTTTTTTGTACTGATTTTGTTTTTCCCAATTTGGTTTCTGCTATGAATGTTCTTACATATTTTATATTTTGTTATGCACATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAACGTAAGCTCTTGATCATCATTTTTGGTTTTGTTTGGTGGACTTTGGAGCTAGATTTGTGTATTTTGTTAAGTTCTACTGTAGCTGAATGGTTTGACTAAAGATCTGTGAAGTGGGGTTTGTTCTTTAGGTATATATCTTGTTGAAATTGAAACTAAATTTCTGAAATAGCTGTTGGGTGATCTTGTAATTCAGCCTCTTTTCTTCTGTTTCTGTTTTCTGGGATCTGGATGTGTCATTTTGCCTTACGTTTGAGGTGAGGTGAGAGGAACCCTTTTGCAGTTGAAGATGGCGCTTTTTTGGTTTATCTTTATGCATTATCATTGTTCTTGTTTTTCATTATTCTTCGATTTCTGTTGTTACATGTTGTTCCTTTAGCCTCGATTATCTTATTCTCTTGATGTCGTTTCTACTGCCTCTTTTTTTATCATTCATTGAGTCTGAGGGTGTAGCCGGAAACAGCCTCTCTACCTTTCTCAAGTTAGGGGTAGAGGTAAGGTTTGTGTACGCTCTATCCTCACAAACCAACCTCGCTTGTGGGATTACAGTGAATTATTTGTTGCTGTTTTCTTTGCTATTATGTCTTGGTTATGTTCTTACAGTCAGGTTATGTTTTAACATGCTTGAGTGTCTTTCTAATAAGGAAGAAGTTTTTAAGAAACATGCACTAGTTGTGTTATCCTGTAATTATGGTTAGTAGGTTATTGCAAATACAAGGACAAAACCAAACTTTTTTAGGATTATGAAATGTTTAAATTGAGCAACTTGTGACATTTCCATATAATTTTGTAGTTGATAGCATGTGATAGTTTTGCCAAGTGATTTTTAGTGCTCTGTGCAAAGTTCAGTAAGCAGTACGATGTGCTGCAATCTGCTGCGTATTTCGCATTCTGAAGTTCTGCATAGATTTGGTAGAGATGTTTCTTCCAGTTTGTTTTGTTGATACTGTGGCCAGGAGTGTCTGTTTGATGATACTCAGCTACGTACGAAGCTATAGGATAGTGCTTGATATGAATGATAACTTTGTTTTCTGGGCCGTGGATCTTCTTGTATGCTTTGTTCATCCACTGATGGAAAATGGAAAGGAATGGTATAAATGTGAAGTACATTATCGAGTTTTGCAGCTTAGGTGGGTATTTAACTACTGTGTGATTGAATTGGTATCTAGGACTACCTATTATATGAGTTGAAATATGCAAACAGAGCTCGTTGATGAGGATAATGTTTAAGATGGTACTGGATATTTTTAAACTTGAGATGAGTCAAATCAAGGACAACACGAAAGACCATAGTTCATCAAGTTCTGCTTATTCTCAGAATTCATATGTTGCCACATGTGTGGTGACTTAAAGCGATTATAATCTCGTTTCCTCCATGCAGCGATTTGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAGGCGGCTGGAATTCGACTCGGTACCTGATGTACTAAAACAGGGAAGTTTTCGTTAATTAGGGGAATTTGACACCGAGTTGCTTGATGACTTGTTTATTTGCTATTGTGAGATGCACATAGTTGTTGCATGTTTGTAACTCACTGATGATGATCACTTTACAATGACCTAGAAGATTTCTGTTTGCTTAAATTTTTTACCCTGAGAGCTTGAAATGCTTGCTGAAGAATGCTTTGCTTCAATATTTATGCAGCTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTG</genome_strand>
        <mrna_strand>TTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAG.....................................................................................ATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGGTGCTTCTCTGAAGATCTCTTCAAGGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350917" ref_strand="+" ref_description="SGN-E350917 [cTOS-7-L13]">
      <seq>aaagatcactttttttctggttctttgttgaaatcttcttccaagaactcatcttttagcttttatattctgatattttagctcattttgctataatggggtgcagatattgtttttcttgtatttttctactgttttctttcttcatttcagcttcagcttcagcttatttatcagatgggatttttgttaatgaaggtttaactgggaggaatctacttcaagccaagaaaccttgtcctatcagcttcgagtttcaaaactacacagtggtcactacccaatgcaaaggaccaaaatacccagccaaacaatgttgtgaagcccttgcggagtttgcgtgtccctattcagaattcgtgaatgatttgacaactgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgtagactatcaccgatcctgatgattgcaacagctcttacgggcttcttcttgntgcttctctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="111785" stop="108760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111485" g_stop="111309" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111308" i_stop="111224" i_length="85">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111223" g_stop="111167" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="234" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111166" i_stop="109422" i_length="1745">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109421" g_stop="109060" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="596" r_length="362" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E350917" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111485" e_stop="111309"/>
          <exon e_start="111223" e_stop="111167"/>
          <exon e_start="109421" e_stop="109060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAGGTTTGTGTTTTTTGTACTGATTTTGTTTTTCCCAATTTGGTTTCTGCTATGAATGTTCTTACATATTTTATATTTTGTTATGCACATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAACGTAAGCTCTTGATCATCATTTTTGGTTTTGTTTGGTGGACTTTGGAGCTAGATTTGTGTATTTTGTTAAGTTCTACTGTAGCTGAATGGTTTGACTAAAGATCTGTGAAGTGGGGTTTGTTCTTTAGGTATATATCTTGTTGAAATTGAAACTAAATTTCTGAAATAGCTGTTGGGTGATCTTGTAATTCAGCCTCTTTTCTTCTGTTTCTGTTTTCTGGGATCTGGATGTGTCATTTTGCCTTACGTTTGAGGTGAGGTGAGAGGAACCCTTTTGCAGTTGAAGATGGCGCTTTTTTGGTTTATCTTTATGCATTATCATTGTTCTTGTTTTTCATTATTCTTCGATTTCTGTTGTTACATGTTGTTCCTTTAGCCTCGATTATCTTATTCTCTTGATGTCGTTTCTACTGCCTCTTTTTTTATCATTCATTGAGTCTGAGGGTGTAGCCGGAAACAGCCTCTCTACCTTTCTCAAGTTAGGGGTAGAGGTAAGGTTTGTGTACGCTCTATCCTCACAAACCAACCTCGCTTGTGGGATTACAGTGAATTATTTGTTGCTGTTTTCTTTGCTATTATGTCTTGGTTATGTTCTTACAGTCAGGTTATGTTTTAACATGCTTGAGTGTCTTTCTAATAAGGAAGAAGTTTTTAAGAAACATGCACTAGTTGTGTTATCCTGTAATTATGGTTAGTAGGTTATTGCAAATACAAGGACAAAACCAAACTTTTTTAGGATTATGAAATGTTTAAATTGAGCAACTTGTGACATTTCCATATAATTTTGTAGTTGATAGCATGTGATAGTTTTGCCAAGTGATTTTTAGTGCTCTGTGCAAAGTTCAGTAAGCAGTACGATGTGCTGCAATCTGCTGCGTATTTCGCATTCTGAAGTTCTGCATAGATTTGGTAGAGATGTTTCTTCCAGTTTGTTTTGTTGATACTGTGGCCAGGAGTGTCTGTTTGATGATACTCAGCTACGTACGAAGCTATAGGATAGTGCTTGATATGAATGATAACTTTGTTTTCTGGGCCGTGGATCTTCTTGTATGCTTTGTTCATCCACTGATGGAAAATGGAAAGGAATGGTATAAATGTGAAGTACATTATCGAGTTTTGCAGCTTAGGTGGGTATTTAACTACTGTGTGATTGAATTGGTATCTAGGACTACCTATTATATGAGTTGAAATATGCAAACAGAGCTCGTTGATGAGGATAATGTTTAAGATGGTACTGGATATTTTTAAACTTGAGATGAGTCAAATCAAGGACAACACGAAAGACCATAGTTCATCAAGTTCTGCTTATTCTCAGAATTCATATGTTGCCACATGTGTGGTGACTTAAAGCGATTATAATCTCGTTTCCTCCATGCAGCGATTTGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAGGCGGCTGGAATTCGACTCGGTACCTGATGTACTAAAACAGGGAAGTTTTCGTTAATTAGGGGAATTTGACACCGAGTTGCTTGATGACTTGTTTATTTGCTATTGTGAGATGCACATAGTTGTTGCATGTTTGTAACTCACTGATGATGATCACTTTACAATGACCTAGAAGATTTCTGTTTGCTTAAATTTTTTACCCTGAGAGCTTGAAATGCTTGCTGAAGAATGCTTTGCTTCAATATTTATGCAGCTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGA</genome_strand>
        <mrna_strand>AAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAG.....................................................................................ATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGNTGCTTCTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354352" ref_strand="+" ref_description="SGN-E354352 [cTOS-17-G9]">
      <seq>ttctggttctttgttgaaatcttcttccaagaactcatcttttagcttttatattctgatattttagctcattttgctataatggggtgcagatattgtttttcttgtatttttctactgttttctttcttcatttcagcttcagcttcagcttatttatcagatgggatttttgttaatgaaggtttaactgggaggaatctacttcaagccaagaaaccttgtcctatcagcttcgagtttcaaaactacacagtggtcactacccaatgcaaaggaccaaaatacccagccaaacaatgttgtgaagcccttgcggagtttgcgtgtccctattcagaattcgtgaatgatttgacaactgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgtagactatcaccgatcctgatgattgcaacagctcttacgggcttcttcttgttgcttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="111771" stop="108762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111471" g_stop="111309" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111308" i_stop="111224" i_length="85">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111223" g_stop="111167" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="220" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111166" i_stop="109422" i_length="1745">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109421" g_stop="109062" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="580" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E354352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111471" e_stop="111309"/>
          <exon e_start="111223" e_stop="111167"/>
          <exon e_start="109421" e_stop="109062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAGGTTTGTGTTTTTTGTACTGATTTTGTTTTTCCCAATTTGGTTTCTGCTATGAATGTTCTTACATATTTTATATTTTGTTATGCACATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAACGTAAGCTCTTGATCATCATTTTTGGTTTTGTTTGGTGGACTTTGGAGCTAGATTTGTGTATTTTGTTAAGTTCTACTGTAGCTGAATGGTTTGACTAAAGATCTGTGAAGTGGGGTTTGTTCTTTAGGTATATATCTTGTTGAAATTGAAACTAAATTTCTGAAATAGCTGTTGGGTGATCTTGTAATTCAGCCTCTTTTCTTCTGTTTCTGTTTTCTGGGATCTGGATGTGTCATTTTGCCTTACGTTTGAGGTGAGGTGAGAGGAACCCTTTTGCAGTTGAAGATGGCGCTTTTTTGGTTTATCTTTATGCATTATCATTGTTCTTGTTTTTCATTATTCTTCGATTTCTGTTGTTACATGTTGTTCCTTTAGCCTCGATTATCTTATTCTCTTGATGTCGTTTCTACTGCCTCTTTTTTTATCATTCATTGAGTCTGAGGGTGTAGCCGGAAACAGCCTCTCTACCTTTCTCAAGTTAGGGGTAGAGGTAAGGTTTGTGTACGCTCTATCCTCACAAACCAACCTCGCTTGTGGGATTACAGTGAATTATTTGTTGCTGTTTTCTTTGCTATTATGTCTTGGTTATGTTCTTACAGTCAGGTTATGTTTTAACATGCTTGAGTGTCTTTCTAATAAGGAAGAAGTTTTTAAGAAACATGCACTAGTTGTGTTATCCTGTAATTATGGTTAGTAGGTTATTGCAAATACAAGGACAAAACCAAACTTTTTTAGGATTATGAAATGTTTAAATTGAGCAACTTGTGACATTTCCATATAATTTTGTAGTTGATAGCATGTGATAGTTTTGCCAAGTGATTTTTAGTGCTCTGTGCAAAGTTCAGTAAGCAGTACGATGTGCTGCAATCTGCTGCGTATTTCGCATTCTGAAGTTCTGCATAGATTTGGTAGAGATGTTTCTTCCAGTTTGTTTTGTTGATACTGTGGCCAGGAGTGTCTGTTTGATGATACTCAGCTACGTACGAAGCTATAGGATAGTGCTTGATATGAATGATAACTTTGTTTTCTGGGCCGTGGATCTTCTTGTATGCTTTGTTCATCCACTGATGGAAAATGGAAAGGAATGGTATAAATGTGAAGTACATTATCGAGTTTTGCAGCTTAGGTGGGTATTTAACTACTGTGTGATTGAATTGGTATCTAGGACTACCTATTATATGAGTTGAAATATGCAAACAGAGCTCGTTGATGAGGATAATGTTTAAGATGGTACTGGATATTTTTAAACTTGAGATGAGTCAAATCAAGGACAACACGAAAGACCATAGTTCATCAAGTTCTGCTTATTCTCAGAATTCATATGTTGCCACATGTGTGGTGACTTAAAGCGATTATAATCTCGTTTCCTCCATGCAGCGATTTGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAGGCGGCTGGAATTCGACTCGGTACCTGATGTACTAAAACAGGGAAGTTTTCGTTAATTAGGGGAATTTGACACCGAGTTGCTTGATGACTTGTTTATTTGCTATTGTGAGATGCACATAGTTGTTGCATGTTTGTAACTCACTGATGATGATCACTTTACAATGACCTAGAAGATTTCTGTTTGCTTAAATTTTTTACCCTGAGAGCTTGAAATGCTTGCTGAAGAATGCTTTGCTTCAATATTTATGCAGCTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCT</genome_strand>
        <mrna_strand>TTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAG.....................................................................................ATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274917" ref_strand="+" ref_description="SGN-E274917 [cLEN-16-D13]">
      <seq>ttctactgctttgtttcttcatctcagctgcagctccaacttatttatcagatgggatttttgtgaatgaaggtttaactgggaggaatctacttcaagccaagaaacctgggcctatcagcttcgagtgtcaaaactacacagaggtcactacccaccgcaaaggaccaaaatacccacccaaacaatgttgtgaaccccttgcggagttcgcgtgtccctattcaaaattcccgaatgattcgacaactgattgcgcctctaccatgttcagctacattaaccttcacgggaagtacccacccggccttttcgccagtgagcgcaataaagacaaaaatgggctaccatgtgctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgcatactatcaccgatcctgatgattgcaacagctcttacaggcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="111536" stop="108777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111359" g_stop="111309" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111308" i_stop="111224" i_length="85">
            <donor d_prob="0.955" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111223" g_stop="111167" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="108" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111166" i_stop="109422" i_length="1745">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.918" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109421" g_stop="109077" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="453" r_length="345" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E274917" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111359" e_stop="111309"/>
          <exon e_start="111223" e_stop="111167"/>
          <exon e_start="109421" e_stop="109077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAGGTTTGTGTTTTTTGTACTGATTTTGTTTTTCCCAATTTGGTTTCTGCTATGAATGTTCTTACATATTTTATATTTTGTTATGCACATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAACGTAAGCTCTTGATCATCATTTTTGGTTTTGTTTGGTGGACTTTGGAGCTAGATTTGTGTATTTTGTTAAGTTCTACTGTAGCTGAATGGTTTGACTAAAGATCTGTGAAGTGGGGTTTGTTCTTTAGGTATATATCTTGTTGAAATTGAAACTAAATTTCTGAAATAGCTGTTGGGTGATCTTGTAATTCAGCCTCTTTTCTTCTGTTTCTGTTTTCTGGGATCTGGATGTGTCATTTTGCCTTACGTTTGAGGTGAGGTGAGAGGAACCCTTTTGCAGTTGAAGATGGCGCTTTTTTGGTTTATCTTTATGCATTATCATTGTTCTTGTTTTTCATTATTCTTCGATTTCTGTTGTTACATGTTGTTCCTTTAGCCTCGATTATCTTATTCTCTTGATGTCGTTTCTACTGCCTCTTTTTTTATCATTCATTGAGTCTGAGGGTGTAGCCGGAAACAGCCTCTCTACCTTTCTCAAGTTAGGGGTAGAGGTAAGGTTTGTGTACGCTCTATCCTCACAAACCAACCTCGCTTGTGGGATTACAGTGAATTATTTGTTGCTGTTTTCTTTGCTATTATGTCTTGGTTATGTTCTTACAGTCAGGTTATGTTTTAACATGCTTGAGTGTCTTTCTAATAAGGAAGAAGTTTTTAAGAAACATGCACTAGTTGTGTTATCCTGTAATTATGGTTAGTAGGTTATTGCAAATACAAGGACAAAACCAAACTTTTTTAGGATTATGAAATGTTTAAATTGAGCAACTTGTGACATTTCCATATAATTTTGTAGTTGATAGCATGTGATAGTTTTGCCAAGTGATTTTTAGTGCTCTGTGCAAAGTTCAGTAAGCAGTACGATGTGCTGCAATCTGCTGCGTATTTCGCATTCTGAAGTTCTGCATAGATTTGGTAGAGATGTTTCTTCCAGTTTGTTTTGTTGATACTGTGGCCAGGAGTGTCTGTTTGATGATACTCAGCTACGTACGAAGCTATAGGATAGTGCTTGATATGAATGATAACTTTGTTTTCTGGGCCGTGGATCTTCTTGTATGCTTTGTTCATCCACTGATGGAAAATGGAAAGGAATGGTATAAATGTGAAGTACATTATCGAGTTTTGCAGCTTAGGTGGGTATTTAACTACTGTGTGATTGAATTGGTATCTAGGACTACCTATTATATGAGTTGAAATATGCAAACAGAGCTCGTTGATGAGGATAATGTTTAAGATGGTACTGGATATTTTTAAACTTGAGATGAGTCAAATCAAGGACAACACGAAAGACCATAGTTCATCAAGTTCTGCTTATTCTCAGAATTCATATGTTGCCACATGTGTGGTGACTTAAAGCGATTATAATCTCGTTTCCTCCATGCAGCGATTTGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAGGCGGCTGGAATTCGACTCGGTACCTGATGTACTAAAACAGGGAAGTTTTCGTTAATTAGGGGAATTTGACACCGAGTTGCTTGATGACTTGTTTATTTGCTATTGTGAGATGCACATAGTTGTTGCATGTTTGTAACTCACTGATGATGATCACTTTACAATGACCTAGAAGATTTCTGTTTGCTTAAATTTTTTACCCTGAGAGCTTGAAATGCTTGCTGAAGAATGCTTTGCTTCAATATTTATGCAGCTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCT</genome_strand>
        <mrna_strand>TTCTACTGCTTTGTTTCTTCATCTCAGCTGCAGCTCCAACTTATTTATCAG.....................................................................................ATGGGATTTTTGTGAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCCTATCAGCTTCGAGTGTCAAAACTACACAGAGGTCACTACCCACCGCAAAGGACCAAAATACCCACCCAAACAATGTTGTGAACCCCTTGCGGAGTTCGCGTGTCCCTATTCAAAATTCCCGAATGATTCGACAACTGATTGCGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCCGGCCTTTTCGCCAGTGAGCGCAATAAAGACAAAAATGGGCTACCATGTGCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGCATACTATCACCGATCCTGATGATTGCAACAGCTCTTACAGGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212831" ref_strand="+" ref_description="SGN-E212831 [cLEC-73-E4]">
      <seq>aagaacagagataacctttgttcaaagggaaagagaacagatagatctctttctatttctgtttttttctcaaagatcactttttttctggttctttgttgaaatcttcttccaagaactcatcttttagcttttatattctgatattttagctcattttgctataatggggtgcagatattgtttttcttgtatttttctactgttttctttcttcatttcagcttcagcttcagcttatttatcagatgggatttttgttaatgaaggtttaactgggaggaatctacttcaagccaagaaaccttgtcctatcagcttcgagtttcaaaactacacagtggtcactacccaatgcaaaggaccaaaatacccagccaaacaatgttgtgaagcccttgcggagtttgcgtgtccctattcagaattcgtgaatgatttgacaactgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgtagactatcaccgatcctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="111856" stop="108802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111556" g_stop="111309" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111308" i_stop="111224" i_length="85">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111223" g_stop="111167" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="305" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111166" i_stop="109422" i_length="1745">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109421" g_stop="109102" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="625" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E212831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111556" e_stop="111309"/>
          <exon e_start="111223" e_stop="111167"/>
          <exon e_start="109421" e_stop="109102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAGGTTTGTGTTTTTTGTACTGATTTTGTTTTTCCCAATTTGGTTTCTGCTATGAATGTTCTTACATATTTTATATTTTGTTATGCACATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAACGTAAGCTCTTGATCATCATTTTTGGTTTTGTTTGGTGGACTTTGGAGCTAGATTTGTGTATTTTGTTAAGTTCTACTGTAGCTGAATGGTTTGACTAAAGATCTGTGAAGTGGGGTTTGTTCTTTAGGTATATATCTTGTTGAAATTGAAACTAAATTTCTGAAATAGCTGTTGGGTGATCTTGTAATTCAGCCTCTTTTCTTCTGTTTCTGTTTTCTGGGATCTGGATGTGTCATTTTGCCTTACGTTTGAGGTGAGGTGAGAGGAACCCTTTTGCAGTTGAAGATGGCGCTTTTTTGGTTTATCTTTATGCATTATCATTGTTCTTGTTTTTCATTATTCTTCGATTTCTGTTGTTACATGTTGTTCCTTTAGCCTCGATTATCTTATTCTCTTGATGTCGTTTCTACTGCCTCTTTTTTTATCATTCATTGAGTCTGAGGGTGTAGCCGGAAACAGCCTCTCTACCTTTCTCAAGTTAGGGGTAGAGGTAAGGTTTGTGTACGCTCTATCCTCACAAACCAACCTCGCTTGTGGGATTACAGTGAATTATTTGTTGCTGTTTTCTTTGCTATTATGTCTTGGTTATGTTCTTACAGTCAGGTTATGTTTTAACATGCTTGAGTGTCTTTCTAATAAGGAAGAAGTTTTTAAGAAACATGCACTAGTTGTGTTATCCTGTAATTATGGTTAGTAGGTTATTGCAAATACAAGGACAAAACCAAACTTTTTTAGGATTATGAAATGTTTAAATTGAGCAACTTGTGACATTTCCATATAATTTTGTAGTTGATAGCATGTGATAGTTTTGCCAAGTGATTTTTAGTGCTCTGTGCAAAGTTCAGTAAGCAGTACGATGTGCTGCAATCTGCTGCGTATTTCGCATTCTGAAGTTCTGCATAGATTTGGTAGAGATGTTTCTTCCAGTTTGTTTTGTTGATACTGTGGCCAGGAGTGTCTGTTTGATGATACTCAGCTACGTACGAAGCTATAGGATAGTGCTTGATATGAATGATAACTTTGTTTTCTGGGCCGTGGATCTTCTTGTATGCTTTGTTCATCCACTGATGGAAAATGGAAAGGAATGGTATAAATGTGAAGTACATTATCGAGTTTTGCAGCTTAGGTGGGTATTTAACTACTGTGTGATTGAATTGGTATCTAGGACTACCTATTATATGAGTTGAAATATGCAAACAGAGCTCGTTGATGAGGATAATGTTTAAGATGGTACTGGATATTTTTAAACTTGAGATGAGTCAAATCAAGGACAACACGAAAGACCATAGTTCATCAAGTTCTGCTTATTCTCAGAATTCATATGTTGCCACATGTGTGGTGACTTAAAGCGATTATAATCTCGTTTCCTCCATGCAGCGATTTGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAGGCGGCTGGAATTCGACTCGGTACCTGATGTACTAAAACAGGGAAGTTTTCGTTAATTAGGGGAATTTGACACCGAGTTGCTTGATGACTTGTTTATTTGCTATTGTGAGATGCACATAGTTGTTGCATGTTTGTAACTCACTGATGATGATCACTTTACAATGACCTAGAAGATTTCTGTTTGCTTAAATTTTTTACCCTGAGAGCTTGAAATGCTTGCTGAAGAATGCTTTGCTTCAATATTTATGCAGCTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATG</genome_strand>
        <mrna_strand>AAGAACAGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAG.....................................................................................ATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205327" ref_strand="+" ref_description="SGN-E205327 [cLEC-25-F19]">
      <seq>tcaaacttactgtaaacaattagctggcaagaacagagataacctttgttcaaagggaaagagaacagatagatctctttctatttctgtttttttctcaaagatcactttttttctggttctttgttgaaatcttcttccaagaactcatcttttagcttttatattctgatattttagctcattttgctataatggggtgcagatattgtttttcttgtatttttctactgttttctttcttcatttcagcttcagcttcagcttatttatcagatgggatttttgttaatgaaggtttaactgggaggaatctacttcaagccaagaaaccttgtcctatcagcttcgagtttcaaaactacacagtggtcactacccaatgcaaaggaccaaaatacccagccaaacaatgttgtgaagcccttgcggagtttgcgtgtccctattcagaattcgtgaatgatttgacaactgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="111884" stop="108826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111584" g_stop="111309" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111308" i_stop="111224" i_length="85">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111223" g_stop="111167" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="333" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111166" i_stop="109422" i_length="1745">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109421" g_stop="109126" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="629" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E205327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111584" e_stop="111309"/>
          <exon e_start="111223" e_stop="111167"/>
          <exon e_start="109421" e_stop="109126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTTACTGTAAACAATTAGCTGGCAAGAACAGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAGGTTTGTGTTTTTTGTACTGATTTTGTTTTTCCCAATTTGGTTTCTGCTATGAATGTTCTTACATATTTTATATTTTGTTATGCACATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAACGTAAGCTCTTGATCATCATTTTTGGTTTTGTTTGGTGGACTTTGGAGCTAGATTTGTGTATTTTGTTAAGTTCTACTGTAGCTGAATGGTTTGACTAAAGATCTGTGAAGTGGGGTTTGTTCTTTAGGTATATATCTTGTTGAAATTGAAACTAAATTTCTGAAATAGCTGTTGGGTGATCTTGTAATTCAGCCTCTTTTCTTCTGTTTCTGTTTTCTGGGATCTGGATGTGTCATTTTGCCTTACGTTTGAGGTGAGGTGAGAGGAACCCTTTTGCAGTTGAAGATGGCGCTTTTTTGGTTTATCTTTATGCATTATCATTGTTCTTGTTTTTCATTATTCTTCGATTTCTGTTGTTACATGTTGTTCCTTTAGCCTCGATTATCTTATTCTCTTGATGTCGTTTCTACTGCCTCTTTTTTTATCATTCATTGAGTCTGAGGGTGTAGCCGGAAACAGCCTCTCTACCTTTCTCAAGTTAGGGGTAGAGGTAAGGTTTGTGTACGCTCTATCCTCACAAACCAACCTCGCTTGTGGGATTACAGTGAATTATTTGTTGCTGTTTTCTTTGCTATTATGTCTTGGTTATGTTCTTACAGTCAGGTTATGTTTTAACATGCTTGAGTGTCTTTCTAATAAGGAAGAAGTTTTTAAGAAACATGCACTAGTTGTGTTATCCTGTAATTATGGTTAGTAGGTTATTGCAAATACAAGGACAAAACCAAACTTTTTTAGGATTATGAAATGTTTAAATTGAGCAACTTGTGACATTTCCATATAATTTTGTAGTTGATAGCATGTGATAGTTTTGCCAAGTGATTTTTAGTGCTCTGTGCAAAGTTCAGTAAGCAGTACGATGTGCTGCAATCTGCTGCGTATTTCGCATTCTGAAGTTCTGCATAGATTTGGTAGAGATGTTTCTTCCAGTTTGTTTTGTTGATACTGTGGCCAGGAGTGTCTGTTTGATGATACTCAGCTACGTACGAAGCTATAGGATAGTGCTTGATATGAATGATAACTTTGTTTTCTGGGCCGTGGATCTTCTTGTATGCTTTGTTCATCCACTGATGGAAAATGGAAAGGAATGGTATAAATGTGAAGTACATTATCGAGTTTTGCAGCTTAGGTGGGTATTTAACTACTGTGTGATTGAATTGGTATCTAGGACTACCTATTATATGAGTTGAAATATGCAAACAGAGCTCGTTGATGAGGATAATGTTTAAGATGGTACTGGATATTTTTAAACTTGAGATGAGTCAAATCAAGGACAACACGAAAGACCATAGTTCATCAAGTTCTGCTTATTCTCAGAATTCATATGTTGCCACATGTGTGGTGACTTAAAGCGATTATAATCTCGTTTCCTCCATGCAGCGATTTGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAGGCGGCTGGAATTCGACTCGGTACCTGATGTACTAAAACAGGGAAGTTTTCGTTAATTAGGGGAATTTGACACCGAGTTGCTTGATGACTTGTTTATTTGCTATTGTGAGATGCACATAGTTGTTGCATGTTTGTAACTCACTGATGATGATCACTTTACAATGACCTAGAAGATTTCTGTTTGCTTAAATTTTTTACCCTGAGAGCTTGAAATGCTTGCTGAAGAATGCTTTGCTTCAATATTTATGCAGCTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGC</genome_strand>
        <mrna_strand>TCAAACTTACTGTAAACAATTAGCTGGCAAGAACAGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAG.....................................................................................ATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270810" ref_strand="+" ref_description="SGN-E270810 [cLEM-6-M13]">
      <seq>aaacttactgtaaacaattagctggcaagaacagagataacctttgttcaaagggaaagagaacagatagatctctttctatttctgtttttttctcaaagatcactttttttctggttctttgttgaaatcttcttccaagaactcatcttttagcttttatattctgatattttagctcattttgctataatggggtgcagatattgtttttcttgtatttttctactgttttctttcttcatttcagcttcagcttcagcttatttatcagatgggatttttgttaatgaaggtttaactgggaggaatctacttcaagccaagaaaccttgtcctatcagcttcgagtttcaaaactacacagtggtcactacccaatgcaaaggaccaaaatacccagccaaacaatgttgtgaagcccttgcggagtttgcgtgtccctattcagaattcgtgaatgatttgacaactgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="111882" stop="108861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111582" g_stop="111309" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111308" i_stop="111224" i_length="85">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111223" g_stop="111167" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="331" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111166" i_stop="109422" i_length="1745">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109421" g_stop="109161" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="592" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E270810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111582" e_stop="111309"/>
          <exon e_start="111223" e_stop="111167"/>
          <exon e_start="109421" e_stop="109161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTACTGTAAACAATTAGCTGGCAAGAACAGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAGGTTTGTGTTTTTTGTACTGATTTTGTTTTTCCCAATTTGGTTTCTGCTATGAATGTTCTTACATATTTTATATTTTGTTATGCACATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAACGTAAGCTCTTGATCATCATTTTTGGTTTTGTTTGGTGGACTTTGGAGCTAGATTTGTGTATTTTGTTAAGTTCTACTGTAGCTGAATGGTTTGACTAAAGATCTGTGAAGTGGGGTTTGTTCTTTAGGTATATATCTTGTTGAAATTGAAACTAAATTTCTGAAATAGCTGTTGGGTGATCTTGTAATTCAGCCTCTTTTCTTCTGTTTCTGTTTTCTGGGATCTGGATGTGTCATTTTGCCTTACGTTTGAGGTGAGGTGAGAGGAACCCTTTTGCAGTTGAAGATGGCGCTTTTTTGGTTTATCTTTATGCATTATCATTGTTCTTGTTTTTCATTATTCTTCGATTTCTGTTGTTACATGTTGTTCCTTTAGCCTCGATTATCTTATTCTCTTGATGTCGTTTCTACTGCCTCTTTTTTTATCATTCATTGAGTCTGAGGGTGTAGCCGGAAACAGCCTCTCTACCTTTCTCAAGTTAGGGGTAGAGGTAAGGTTTGTGTACGCTCTATCCTCACAAACCAACCTCGCTTGTGGGATTACAGTGAATTATTTGTTGCTGTTTTCTTTGCTATTATGTCTTGGTTATGTTCTTACAGTCAGGTTATGTTTTAACATGCTTGAGTGTCTTTCTAATAAGGAAGAAGTTTTTAAGAAACATGCACTAGTTGTGTTATCCTGTAATTATGGTTAGTAGGTTATTGCAAATACAAGGACAAAACCAAACTTTTTTAGGATTATGAAATGTTTAAATTGAGCAACTTGTGACATTTCCATATAATTTTGTAGTTGATAGCATGTGATAGTTTTGCCAAGTGATTTTTAGTGCTCTGTGCAAAGTTCAGTAAGCAGTACGATGTGCTGCAATCTGCTGCGTATTTCGCATTCTGAAGTTCTGCATAGATTTGGTAGAGATGTTTCTTCCAGTTTGTTTTGTTGATACTGTGGCCAGGAGTGTCTGTTTGATGATACTCAGCTACGTACGAAGCTATAGGATAGTGCTTGATATGAATGATAACTTTGTTTTCTGGGCCGTGGATCTTCTTGTATGCTTTGTTCATCCACTGATGGAAAATGGAAAGGAATGGTATAAATGTGAAGTACATTATCGAGTTTTGCAGCTTAGGTGGGTATTTAACTACTGTGTGATTGAATTGGTATCTAGGACTACCTATTATATGAGTTGAAATATGCAAACAGAGCTCGTTGATGAGGATAATGTTTAAGATGGTACTGGATATTTTTAAACTTGAGATGAGTCAAATCAAGGACAACACGAAAGACCATAGTTCATCAAGTTCTGCTTATTCTCAGAATTCATATGTTGCCACATGTGTGGTGACTTAAAGCGATTATAATCTCGTTTCCTCCATGCAGCGATTTGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAGGCGGCTGGAATTCGACTCGGTACCTGATGTACTAAAACAGGGAAGTTTTCGTTAATTAGGGGAATTTGACACCGAGTTGCTTGATGACTTGTTTATTTGCTATTGTGAGATGCACATAGTTGTTGCATGTTTGTAACTCACTGATGATGATCACTTTACAATGACCTAGAAGATTTCTGTTTGCTTAAATTTTTTACCCTGAGAGCTTGAAATGCTTGCTGAAGAATGCTTTGCTTCAATATTTATGCAGCTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCAT</genome_strand>
        <mrna_strand>AAACTTACTGTAAACAATTAGCTGGCAAGAACAGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAG.....................................................................................ATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205522" ref_strand="+" ref_description="SGN-E205522 [cLEC-28-N21]">
      <seq>tcaaacttactgtaaacaattagctggcaagaacagagataacctttgttcaaagggaaagagaacagatagatctctttctatttctgtttttttctcaaagatcactttttttctggttctttgttgaaatcttcttccaagaactcatcttttagcttttatattctgatattttagctcattttgctataatggggtgcagatattgtttttcttgtatttttctactgttttctttcttcatttcagcttcagcttcagcttatttatcagatgggatttttgttaatgaaggtttaactgggaggaatctacttcaagccaagaaaccttgtcctatcagcttcgagtttcaaaactacacagcggtcactacccaatgcaaaggaccaaaatacccagccaaacaatgttgtgaagcccttgcggagtttgcgtgtccctattcagaattcgtgaatgatttgacaactgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="111884" stop="108918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111584" g_stop="111309" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111308" i_stop="111224" i_length="85">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111223" g_stop="111167" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="333" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111166" i_stop="109422" i_length="1745">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109421" g_stop="109218" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="537" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E205522" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111584" e_stop="111309"/>
          <exon e_start="111223" e_stop="111167"/>
          <exon e_start="109421" e_stop="109218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTTACTGTAAACAATTAGCTGGCAAGAACAGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAGGTTTGTGTTTTTTGTACTGATTTTGTTTTTCCCAATTTGGTTTCTGCTATGAATGTTCTTACATATTTTATATTTTGTTATGCACATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAACGTAAGCTCTTGATCATCATTTTTGGTTTTGTTTGGTGGACTTTGGAGCTAGATTTGTGTATTTTGTTAAGTTCTACTGTAGCTGAATGGTTTGACTAAAGATCTGTGAAGTGGGGTTTGTTCTTTAGGTATATATCTTGTTGAAATTGAAACTAAATTTCTGAAATAGCTGTTGGGTGATCTTGTAATTCAGCCTCTTTTCTTCTGTTTCTGTTTTCTGGGATCTGGATGTGTCATTTTGCCTTACGTTTGAGGTGAGGTGAGAGGAACCCTTTTGCAGTTGAAGATGGCGCTTTTTTGGTTTATCTTTATGCATTATCATTGTTCTTGTTTTTCATTATTCTTCGATTTCTGTTGTTACATGTTGTTCCTTTAGCCTCGATTATCTTATTCTCTTGATGTCGTTTCTACTGCCTCTTTTTTTATCATTCATTGAGTCTGAGGGTGTAGCCGGAAACAGCCTCTCTACCTTTCTCAAGTTAGGGGTAGAGGTAAGGTTTGTGTACGCTCTATCCTCACAAACCAACCTCGCTTGTGGGATTACAGTGAATTATTTGTTGCTGTTTTCTTTGCTATTATGTCTTGGTTATGTTCTTACAGTCAGGTTATGTTTTAACATGCTTGAGTGTCTTTCTAATAAGGAAGAAGTTTTTAAGAAACATGCACTAGTTGTGTTATCCTGTAATTATGGTTAGTAGGTTATTGCAAATACAAGGACAAAACCAAACTTTTTTAGGATTATGAAATGTTTAAATTGAGCAACTTGTGACATTTCCATATAATTTTGTAGTTGATAGCATGTGATAGTTTTGCCAAGTGATTTTTAGTGCTCTGTGCAAAGTTCAGTAAGCAGTACGATGTGCTGCAATCTGCTGCGTATTTCGCATTCTGAAGTTCTGCATAGATTTGGTAGAGATGTTTCTTCCAGTTTGTTTTGTTGATACTGTGGCCAGGAGTGTCTGTTTGATGATACTCAGCTACGTACGAAGCTATAGGATAGTGCTTGATATGAATGATAACTTTGTTTTCTGGGCCGTGGATCTTCTTGTATGCTTTGTTCATCCACTGATGGAAAATGGAAAGGAATGGTATAAATGTGAAGTACATTATCGAGTTTTGCAGCTTAGGTGGGTATTTAACTACTGTGTGATTGAATTGGTATCTAGGACTACCTATTATATGAGTTGAAATATGCAAACAGAGCTCGTTGATGAGGATAATGTTTAAGATGGTACTGGATATTTTTAAACTTGAGATGAGTCAAATCAAGGACAACACGAAAGACCATAGTTCATCAAGTTCTGCTTATTCTCAGAATTCATATGTTGCCACATGTGTGGTGACTTAAAGCGATTATAATCTCGTTTCCTCCATGCAGCGATTTGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAGGCGGCTGGAATTCGACTCGGTACCTGATGTACTAAAACAGGGAAGTTTTCGTTAATTAGGGGAATTTGACACCGAGTTGCTTGATGACTTGTTTATTTGCTATTGTGAGATGCACATAGTTGTTGCATGTTTGTAACTCACTGATGATGATCACTTTACAATGACCTAGAAGATTTCTGTTTGCTTAAATTTTTTACCCTGAGAGCTTGAAATGCTTGCTGAAGAATGCTTTGCTTCAATATTTATGCAGCTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTT</genome_strand>
        <mrna_strand>TCAAACTTACTGTAAACAATTAGCTGGCAAGAACAGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAG.....................................................................................ATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGCGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200059" ref_strand="+" ref_description="SGN-E200059 [cLEC-8-M12]">
      <seq>agagataacctttgttcaaagggaaagagaacagatagatctctttctatttctgtttttttctcaaagatcactttttttctggttctttgttgaaatcttcttccaagaactcatcttttagcttttatattctgatattttagctcattttgctataatggggtgcagatattgtttttcttgtatttttctactgttttctttcttcatttcagcttcagcttcagcttatttatcagatgggatttttgttaatgaaggtttaactgggaggaatctacttcaagccaagaaaccttgtcctatcagcttcgagtttcaaaactacacagtggtcactacccaatgcaaaggaccaaaatacccagccaaacaatgttgtgaagcccttgcggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="111850" stop="109020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111550" g_stop="111309" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111308" i_stop="111224" i_length="85">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111223" g_stop="111167" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="299" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111166" i_stop="109422" i_length="1745">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109421" g_stop="109320" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="401" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E200059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111550" e_stop="111309"/>
          <exon e_start="111223" e_stop="111167"/>
          <exon e_start="109421" e_stop="109320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAGGTTTGTGTTTTTTGTACTGATTTTGTTTTTCCCAATTTGGTTTCTGCTATGAATGTTCTTACATATTTTATATTTTGTTATGCACATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAACGTAAGCTCTTGATCATCATTTTTGGTTTTGTTTGGTGGACTTTGGAGCTAGATTTGTGTATTTTGTTAAGTTCTACTGTAGCTGAATGGTTTGACTAAAGATCTGTGAAGTGGGGTTTGTTCTTTAGGTATATATCTTGTTGAAATTGAAACTAAATTTCTGAAATAGCTGTTGGGTGATCTTGTAATTCAGCCTCTTTTCTTCTGTTTCTGTTTTCTGGGATCTGGATGTGTCATTTTGCCTTACGTTTGAGGTGAGGTGAGAGGAACCCTTTTGCAGTTGAAGATGGCGCTTTTTTGGTTTATCTTTATGCATTATCATTGTTCTTGTTTTTCATTATTCTTCGATTTCTGTTGTTACATGTTGTTCCTTTAGCCTCGATTATCTTATTCTCTTGATGTCGTTTCTACTGCCTCTTTTTTTATCATTCATTGAGTCTGAGGGTGTAGCCGGAAACAGCCTCTCTACCTTTCTCAAGTTAGGGGTAGAGGTAAGGTTTGTGTACGCTCTATCCTCACAAACCAACCTCGCTTGTGGGATTACAGTGAATTATTTGTTGCTGTTTTCTTTGCTATTATGTCTTGGTTATGTTCTTACAGTCAGGTTATGTTTTAACATGCTTGAGTGTCTTTCTAATAAGGAAGAAGTTTTTAAGAAACATGCACTAGTTGTGTTATCCTGTAATTATGGTTAGTAGGTTATTGCAAATACAAGGACAAAACCAAACTTTTTTAGGATTATGAAATGTTTAAATTGAGCAACTTGTGACATTTCCATATAATTTTGTAGTTGATAGCATGTGATAGTTTTGCCAAGTGATTTTTAGTGCTCTGTGCAAAGTTCAGTAAGCAGTACGATGTGCTGCAATCTGCTGCGTATTTCGCATTCTGAAGTTCTGCATAGATTTGGTAGAGATGTTTCTTCCAGTTTGTTTTGTTGATACTGTGGCCAGGAGTGTCTGTTTGATGATACTCAGCTACGTACGAAGCTATAGGATAGTGCTTGATATGAATGATAACTTTGTTTTCTGGGCCGTGGATCTTCTTGTATGCTTTGTTCATCCACTGATGGAAAATGGAAAGGAATGGTATAAATGTGAAGTACATTATCGAGTTTTGCAGCTTAGGTGGGTATTTAACTACTGTGTGATTGAATTGGTATCTAGGACTACCTATTATATGAGTTGAAATATGCAAACAGAGCTCGTTGATGAGGATAATGTTTAAGATGGTACTGGATATTTTTAAACTTGAGATGAGTCAAATCAAGGACAACACGAAAGACCATAGTTCATCAAGTTCTGCTTATTCTCAGAATTCATATGTTGCCACATGTGTGGTGACTTAAAGCGATTATAATCTCGTTTCCTCCATGCAGCGATTTGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAGGCGGCTGGAATTCGACTCGGTACCTGATGTACTAAAACAGGGAAGTTTTCGTTAATTAGGGGAATTTGACACCGAGTTGCTTGATGACTTGTTTATTTGCTATTGTGAGATGCACATAGTTGTTGCATGTTTGTAACTCACTGATGATGATCACTTTACAATGACCTAGAAGATTTCTGTTTGCTTAAATTTTTTACCCTGAGAGCTTGAAATGCTTGCTGAAGAATGCTTTGCTTCAATATTTATGCAGCTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGT</genome_strand>
        <mrna_strand>AGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAG.....................................................................................ATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736156" ref_strand="+" ref_description="SGN-E736156 [LC04CC06]">
      <seq>ctcttgtacctgttctgacgagggtggttgcctcaggtctaacaagggtccatggagtgatcctgaagtaatgaagcttgtctataatgtagaggcaacaactgtgaaggaaatctctagaaaacttggtgaccaaaggaaaattgaatcctatatacaaatacgcccttcaaagggaaggagcagagacacatccacaagtgattcagtatcggatgctgctgacttgtgttcaccaattagaggaaatagtagctcaattttgaggctgaccccagtagatgaagaagctaggtcatcagattcaacagcctattgtagctgtgatgatgaattcagcctgggtgatcgaggtgtcactaatgagcatggattgctgcattggcaagagcagtctcctgtgagcagtccaatgaatcggtccactaatacattgcctcattctggaggtacctgggcaataaattggtgtgaaagaatccaagagaagattctgagcagctgtttcagttgtttggaaaggaaactgattcctttcatacttaaactctttgcatttattcgtagtcttcccttcgagtactggaggaaacggacaaatgtttttccgactaatgcattggaagaacgacaagggagcagttcatccattaatgatgaagcagttcaaagagtaagggagatccatccatgcatgcagcgtcttcataaattggaaaatttattggaagaaataaacaaaaagcccgctgagatcccagcagagaaggatcgaatgcttcatcagtcacttaacaggatcaagtctgtagaaagtgacctagaaaaacaaaaagggtattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="114575" stop="112040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114275" g_stop="114200" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114199" i_stop="114084" i_length="116">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114083" g_stop="113985" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="175" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113984" i_stop="113903" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113902" g_stop="113789" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="289" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113788" i_stop="113685" i_length="104">
            <donor d_prob="0.533" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113684" g_stop="113525" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="449" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113524" i_stop="112736" i_length="789">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112735" g_stop="112347" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="837" r_length="388" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112346" i_stop="112237" i_length="110">
            <donor d_prob="0.747" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112236" g_stop="112229" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="845" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E736156" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114275" e_stop="114200"/>
          <exon e_start="114083" e_stop="113985"/>
          <exon e_start="113902" e_stop="113789"/>
          <exon e_start="113684" e_stop="113525"/>
          <exon e_start="112735" e_stop="112347"/>
          <exon e_start="112236" e_stop="112229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGTACCTGTTCTGACGAGGGTGGTTGCCTCAGGTCTAACAAGGGTCCATGGAGTGATCCTGAAGTAATGAAGGTGAGCATGCCAGTTCAGTTGTATTATTCTATGACATATTCTTCATCTTGGTAAGCTTTATCTAATCCTGGAGGTGTGAACTAGTTTGTAATAACCTGTTATTTTCTCCTCTTTAGCTTGTCTATAATGTAGAGGCAACAACTGTGAAGGAAATCTCTAGAAAACTTGGTGACCAAAGGAAAATTGAATCCTATATACAAATACGCCCTTCAAAGGTAAATTTTTTCACTTTGGCATGCTCCTTTTTTTCTTTTTCAGTTGTCTTCCTATGTATGACACAATTTATTATGTGTTCAGGGAAGGAGCAGAGACACATCCACAAGTGATTCAGTATCGGATGCTGCTGACTTGTGTTCACCAATTAGAGGAAATAGTAGCTCAATTTTGAGGCTGACCCCAGTAGATGAAGAAGTGAGTTTTGCAAAGCATAATGTACTTCTGTAGTTGCAGTGCACATGTGCACTTGCGCTTCTTTATATATCACACTTTTTGACTTATAGACATTGGTTTCGTAGGCTAGGTCATCAGATTCAACAGCCTATTGTAGCTGTGATGATGAATTCAGCCTGGGTGATCGAGGTGTCACTAATGAGCATGGATTGCTGCATTGGCAAGAGCAGTCTCCTGTGAGCAGTCCAATGAATCGGTCCACTAATACATTGCCTCATTCTGGAGGTATTTGTCTTGTTTATCATGAATTCCATCAAAAGAACCTTTAATTGATAGCTACCTTCACTAATCACTAGTGTGTTGTAAGACGTGGATTGGTTTATAGAGACACCATGAGAATTCAAAGTTACCAGTTTCAAAAAAGAAAATGACACCATGAGAATTATAAAACTCTATTAGTTGAATCAATTCTCAGTTCCATGATATAGGCACAGACAAGTTTTCTTCTGGAGTGTAACTCCACTCCTGTAGAAATCATAGGGGACTAATTAGTGTCTGAAGTTATAATAAACTTGAGAGGAAGTTATGCTGCCACACTACACTTCTCCACCCTCCAAGGAAAAGAAACCTTAAAAGAAAGAATGACTCTTTATGTGTATGAATTTCAGAAGCGGGATTTCTCTTGTCTCAAAACCTTTTCCTTTTAGCATGTGAAAGGAATGTGGGAGATGAAAAACTTCTTGTTTTAAGTCTTATTTGCCTTGCTAAAAGTCCCCTTTGGCTGGTAGGTGTGCTCACCTGGTTTGTTTTTGGCCTTTGTATATCCACCGTATTTTTTCCCTTATTGAAGACTTCACAAAATCTATACTCTATCCATCATCTATACTCTATCCATCTCCTGGTACTCATTTTCATCATTTGTGTACTTACTCTGCAATGATGTGCTTCGCCATGTATATCTATGTAGTCTAGTCAATTGAACTCTGAGTTCTTCTCAGCTAAAACTCATGCTAGAATGGTAATTGTAAATTCATATATCGTGGGGTTCATGTCCATTATTCATGTTCTTTTTAGGTACCTGGGCAATAAATTGGTGTGAAAGAATCCAAGAGAAGATTCTGAGCAGCTGTTTCAGTTGTTTGGAAAGGAAACTGATTCCTTTCATACTTAAACTCTTTGCATTTATTCGTAGTCTTCCCTTCGAGTACTGGAGGAAACGGACAAATGTTTTTCCGACTAATGCATTGGAAGAACGACAAGGGAGCAGTTCATCCATTAATGATGAAGCAGTTCAAAGAGTAAGGGAGATCCATCCATGCATGCAGCGTCTTCATAAATTGGAAAATTTATTGGAAGAAATAAACAAAAAGCCCGCTGAGATCCCAGCAGAGAAGGATCGAATGCTTCATCAGTCACTTAACAGGATCAAGTCTGTAGAAGTTGACCTAGAAAAAACAAAAAGGGTAAGGCTCATCAGTGAGGCAGGTCAAAAAAGTTTCACATAAAATATTTCCTTATAAAAGAATGTCTGTAAGTAGCAGTGTTCTCTTATTATGTTTTATATGTTCAACAGGTATTGCA</genome_strand>
        <mrna_strand>CTCTTGTACCTGTTCTGACGAGGGTGGTTGCCTCAGGTCTAACAAGGGTCCATGGAGTGATCCTGAAGTAATGAAG....................................................................................................................CTTGTCTATAATGTAGAGGCAACAACTGTGAAGGAAATCTCTAGAAAACTTGGTGACCAAAGGAAAATTGAATCCTATATACAAATACGCCCTTCAAAG..................................................................................GGAAGGAGCAGAGACACATCCACAAGTGATTCAGTATCGGATGCTGCTGACTTGTGTTCACCAATTAGAGGAAATAGTAGCTCAATTTTGAGGCTGACCCCAGTAGATGAAGAA........................................................................................................GCTAGGTCATCAGATTCAACAGCCTATTGTAGCTGTGATGATGAATTCAGCCTGGGTGATCGAGGTGTCACTAATGAGCATGGATTGCTGCATTGGCAAGAGCAGTCTCCTGTGAGCAGTCCAATGAATCGGTCCACTAATACATTGCCTCATTCTGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGGGCAATAAATTGGTGTGAAAGAATCCAAGAGAAGATTCTGAGCAGCTGTTTCAGTTGTTTGGAAAGGAAACTGATTCCTTTCATACTTAAACTCTTTGCATTTATTCGTAGTCTTCCCTTCGAGTACTGGAGGAAACGGACAAATGTTTTTCCGACTAATGCATTGGAAGAACGACAAGGGAGCAGTTCATCCATTAATGATGAAGCAGTTCAAAGAGTAAGGGAGATCCATCCATGCATGCAGCGTCTTCATAAATTGGAAAATTTATTGGAAGAAATAAACAAAAAGCCCGCTGAGATCCCAGCAGAGAAGGATCGAATGCTTCATCAGTCACTTAACAGGATCAAGTCTGTAGAAAGTGACCTAG-AAAAACAAAAAGG..............................................................................................................GTATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746226" ref_strand="+" ref_description="SGN-E746226 [GI|47104828]">
      <seq>gttgagtgagagacagaaaaagatactctctccgcatctatacatatagagagggaaaacctatatttatagagagagaaactctagagagagaaaaagccatgtatgtgtatatataggctatatagattacagtgaaaaaaactttctttttcattcctccattattcgttcattctctcagctcaaagaccacagaattttcaagaaatttatgacgttttgaagttaaagttttggtttttttccagatttttctcggaatttatgatttcagagaaaaaaaatcaatgcaaaagctccgtttaatggtcgatttagcttgcgttttgttagggttcagtagtgaaacttgagctcggatggttttcctgcggaacagcatagattgctttaaacgttaagagccacatttccttcgttattcttacatcctctttgttggaaggatgtcagaatggttggatgcatatgatgacgtaagagaaagaagatcagacttcgaggtttcagaggatgaaagacgacgttcacgaattggtactttcaagaaaaaggcattacatgcttcaaacaagttcacccactctctgaagaaaagaggaaaaaggaaagtggactacaggttcccttcagtttcaatagaggatgtacgtgatgcaaaagaggagaatgctgtctgtgaattgcgtcaaaggctgctagagcggaatttgttgccatccatacatgatgactaccatacattgttgagattcttaaaggcaagagatctcaatgttgagaaaactattccgatgtgggaagaaatgcttaactggaggaaagagtttggagcagacacaatattgcaggattttgactttgacgagttagaagaagtattgcagttttacccacaaggatatcatggggttgatagggagggaagacctgtttatatcgaaaggcttggacaagctaatccgaacaaactaatgcggataaccacaattgatcgctacataaaatatcatgtccaagaatttgaaagggcactacatgagaagttccctgcatgttctgttgctgcaaagaaaagaatctgcacaacaactacaattttggatgtgcaaggcttagggattaagaatttcacaaggacagctgctagtcttttggcggccatggcaaaaattgataatagctattatcctgagacactgcatcggatgttcattgtcaatgctggccctggcttcaaaaagatgctctggccagcagctcaaaaatttctggatgcaaagactattgcaaagatacaggtgctcgatcccaaatccttgggtaaactacatgaagttattgacccaagtcaattgcctgactttttaggtggctcttgtacctgttctgacgagggtggttgcctcaggtctaacaagggtccatggagtgatcctgaagtaatgaagcttgtctataatgtagaggcaacaactgtgaaggaaatctctagaaaacttggtgaccaaaggaaaattgaatcctatatacaaatacgcccttcaaagggaaggagcagagacacatccacaagtgattcagtatcggatgctgctgacttgtgttcaccaattagaggaaatagtagctcaattttgaggctgaccccagtagatgaagaagctaggtcatcagattcaacagcctattgtagctgtgatgatgaattcagcctgggtgatcgaggtgtcactaatgagcatggattgctgcattggcaagagcagtctcctgtgagcagtccaatgaatcggtccactaatacattgcctcattctggaggtacctgggcaataaattggtgtgaaagaatccaagagaagattctgagcagctgtttcagttgtttggaaaggaaactgattcctttcatacttaaactctttgcatttattcgtagtcttcccttcgagtactggaggaaacggacaaatgtttttccgactaatgcattggaagaacgacaagggagcagttcatccattaatgatgaagcagttcaaagagtaagggagatccatccatgcatgcagcgtcttcataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="117832" stop="112173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117532" g_stop="117190" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117189" i_stop="116301" i_length="889">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.773" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116300" g_stop="116188" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="456" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116187" i_stop="116081" i_length="107">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116080" g_stop="115668" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="860" r_length="404" r_score="0.847"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115667" i_stop="115589" i_length="79">
            <donor d_prob="0.999" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115588" g_stop="115328" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="1121" r_length="261" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115327" i_stop="114835" i_length="493">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114834" g_stop="114757" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1122" r_stop="1199" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114756" i_stop="114655" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114654" g_stop="114550" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1200" r_stop="1304" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="114549" i_stop="114444" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="114443" g_stop="114394" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1305" r_stop="1354" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="114393" i_stop="114300" i_length="94">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="114299" g_stop="114200" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1355" r_stop="1454" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="114199" i_stop="114084" i_length="116">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="114083" g_stop="113985" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1455" r_stop="1553" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="113984" i_stop="113903" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="113902" g_stop="113789" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1554" r_stop="1667" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="113788" i_stop="113685" i_length="104">
            <donor d_prob="0.533" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="113684" g_stop="113525" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1668" r_stop="1827" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="113524" i_stop="112736" i_length="789">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="112735" g_stop="112461" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1828" r_stop="2102" r_length="275" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E746226" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>2111</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117532" e_stop="117190"/>
          <exon e_start="116300" e_stop="116188"/>
          <exon e_start="116080" e_stop="115668"/>
          <exon e_start="115588" e_stop="115328"/>
          <exon e_start="114834" e_stop="114757"/>
          <exon e_start="114654" e_stop="114550"/>
          <exon e_start="114443" e_stop="114394"/>
          <exon e_start="114299" e_stop="114200"/>
          <exon e_start="114083" e_stop="113985"/>
          <exon e_start="113902" e_stop="113789"/>
          <exon e_start="113684" e_stop="113525"/>
          <exon e_start="112735" e_stop="112461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGTGAGAGACAGAAAAAGATACTCTCTCCGCATCTATACATATAGAGAGGGAAAACCTATATTTATAGAGAGAGAAACTCTAGAGAGAGAAAAAGCCATGTATGTGTATATATAGGCTATATAGATTACAGTGAAAAAAACTTTCTTTTTCATTCCTCCATTATTCGTTCATTCTCTCAGCTCAAAGACCACAGAATTTTCAAGAAATTTATGACGTTTTGAAGTTAAAGTTTTGGTTTTTTTCCAGATTTTTCTCGGAATTTATGATTTCAGAGAAAAAAAATCAATGCAAAAGCTCCGTTTAATGGTCGATTTAGCTTGCGTTTTGTTAGGGTTCAGGTGAGTTTTTTTTTTTGTGGGATTTTGTTTATATGAGTTAAAAACTAGAAAGTTCTTATTTTTATTGTGTGTTTCGATTTTTTAGATGGTTTTTGTTATTAATTGGGATTAATTATGATGTGGGGGTTGTGAGATCTGAGCTAAATTTACTGGCTTGAAACAGTTTGATTGAGTTTTTTTTCCATGTGATCAGCAATTTGCTGATTTTTGTATTTACCAACTTTTTTTTGAGACNCTAAGTTTTTCGATGGGATCGGAAACTTAGCATTTCCGTGAATGCAGTTATCAGTTTAAGAAATGTTCATGATGGTCAATACAATTTGGGGTATGTGATATAGAAAATCTCAGCTAGTTTGTGATTTGAGGCATAGTTGATTGATTAGTTGGATATATGGGTGTAGAGTGTTTGACAATGCACACAGTGTGGGGTTGATTTCTCGGATGGTGGCTCAATTAAAAGTTATTAGCTCTGAAAGAAAATGTGTAAGCTTTTCTAGTGACCCCATGAGAAATTTGTGCATTTTGGATTTAGATCTGTGAAGGCAATTTAATTTATAGGGATAGAACTGGCAGGAAATGGATTTTCAGTTTCCCAGTTTTTATTTATTGGTTCCTGACAGCACTACTTCACTATAATGTGTATGCTGTTCTAGTCGTTGCGTGTTGCGCAAGCACTGACAATTGAAATCAGTGGACTTCTAGTAAATGAAATAGAGGACTCTCTCTGCATAGGAAGAATGAGTTTCAAATTTTTAGGAAGATACGTGTCACTTTCATCATTTAATGTTCTTCTTATCTTCCAGATATTAGTTAATGTGTCATCTTTTCATTTCTTTCTGCTGTGTTAAGTTGAGATTTTGACTGGAGTTGCTTTTTGTCCCATATTTAGTAGTGAAACTTGAGCTCGGATGGTTTTCCTGCGGAACAGCATAGATTGCTTTAAACGTTAAGAGCCACATTTCCTTCGTTATTCTTACATCCTCTTTGTTGGAAGGATGTCAGGTTTGTGCTTGCTATTTAATAATTGACTTTAGGAACTGTTATGGATGATTTAGTTTGTAATTTAAGAACTCATATACGCATATTCTGCGTGATATCTTGTATTCTAGAATGGTTGGATGCATATGATGACGTAAGAGAAAGAAGATCAGACTTCGAGGTTTCAGAGGATGAAAGACGACGTTCACGAATTGGTACTTTCAAGAAAAAGGCATTACATGCTTCAAACAAGTTCACCCACTCTCTGAAGAAAAGAGGAAAAAGGAAAGTGGACTACAGGTTCCCTTCAGTTTCAATAGAGGATGTACGTGATGCAAAAGAGGAGAATGCTGTCTGTGAATTGCGTCAAAGGCTGCTAGAGCGGAATTTGTTGCCATCCATACATGATGACTACCATACATTGTTGAGGTGCATTTTTTTTCTGAAAAATTATTCGGCTGATTTTTCATGTGTGAACCCCTAGGTAGCAATGACAGTTTTCATTGGAAATATGGATGAAGAAGCAGTATTATTTGATGAAGTTGCATCCTTAAACATATTTTGATTTTCCCTACCAATTTCTGAGGCTTGCTACAGGTACCAGCTCAATTCCAGCCTCCCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCCGAA-AAACTAATGCGGTATAACCACAATTGATCGCTACATAAAATATCATGTCCAAGAATTTGAAAGGGCACTACATGAGAAGTTCCCTGCATGTTCTGTTGCTGCAAAGAAAAGAATCTGCACAACAACTACAATTTTGGATGTGCAAGGCTTAGTATGTTAATTCTATCAGTGGCTAATTTACTTAATTGATGATGTTTCTAACTTGTATATCTTTCTAATCTACATGGTCAGAATCATTTTGGACACTTAACTGCATTGACTAGAGACTTCTTTTTTCTATTACAAGGTCGTATTGACATGCATGAAACATCTGACTGGTATTACAAATAGCTAGCATGCCCATGGGTGGTTTTACTTGGGTCGAGATCAATTATTTTCATCATTTGCCCAACTTGATCATACACAAGAGTATCAGAATTTTTTCCTCCAAATTTTTTTTGTAGTGTCCTTATGTAGCAATGAAGATATCATGAGTATTTTCTTGCATTAATACAATTTTGTGCTCGCCGTTTCCGTTACTAATCATTCTCAATCAAGGAATTTTCCCTATGTCGAGCTTTTTTAGAGTTTTGTTCCTAATGTTTTATTAATACTATTTGTTATTATTCAAGTTCAACTTGTAATATGGTATGCTGTAAATGCAGGGGATTAAGAATTTCACAAGGACAGCTGCTAGTCTTTTGGCGGCCATGGCAAAAATTGATAATAGCTATTATCCTGAGGTATAGCTGTTAACTGTGAACATCTATAAATGAGACTCCAAATAGTTTGGTTAGACTCTATTGTCATGGAATACCTTTATAATGTCCAACATTTCTTTGTAGACACTGCATCGGATGTTCATTGTCAATGCTGGCCCTGGCTTCAAAAAGATGCTCTGGCCAGCAGCTCAAAAATTTCTGGATGCAAAGACTATTGCAAAGATACAGGTAGCAGAGGAATCATGTTTTTTTTGTTCGCTCAATTATGTTTTTTTTTGTTCGCTCTCTAACTACAATTGACTGAATCACTGTGTTTCAATCTTTACTTTTGTAGGTGCTCGATCCCAAATCCTTGGGTAAACTACATGAAGTTATTGACCCAAGGTTCATTATTTGTTTTGTTGTATGTTTTGCTTTGAAGAATTAGATCATTCAACCGTATATCTGATTATCTCTCTCTCTCTCTCTCTCTCAAAAGTCAATTGCCTGACTTTTTAGGTGGCTCTTGTACCTGTTCTGACGAGGGTGGTTGCCTCAGGTCTAACAAGGGTCCATGGAGTGATCCTGAAGTAATGAAGGTGAGCATGCCAGTTCAGTTGTATTATTCTATGACATATTCTTCATCTTGGTAAGCTTTATCTAATCCTGGAGGTGTGAACTAGTTTGTAATAACCTGTTATTTTCTCCTCTTTAGCTTGTCTATAATGTAGAGGCAACAACTGTGAAGGAAATCTCTAGAAAACTTGGTGACCAAAGGAAAATTGAATCCTATATACAAATACGCCCTTCAAAGGTAAATTTTTTCACTTTGGCATGCTCCTTTTTTTCTTTTTCAGTTGTCTTCCTATGTATGACACAATTTATTATGTGTTCAGGGAAGGAGCAGAGACACATCCACAAGTGATTCAGTATCGGATGCTGCTGACTTGTGTTCACCAATTAGAGGAAATAGTAGCTCAATTTTGAGGCTGACCCCAGTAGATGAAGAAGTGAGTTTTGCAAAGCATAATGTACTTCTGTAGTTGCAGTGCACATGTGCACTTGCGCTTCTTTATATATCACACTTTTTGACTTATAGACATTGGTTTCGTAGGCTAGGTCATCAGATTCAACAGCCTATTGTAGCTGTGATGATGAATTCAGCCTGGGTGATCGAGGTGTCACTAATGAGCATGGATTGCTGCATTGGCAAGAGCAGTCTCCTGTGAGCAGTCCAATGAATCGGTCCACTAATACATTGCCTCATTCTGGAGGTATTTGTCTTGTTTATCATGAATTCCATCAAAAGAACCTTTAATTGATAGCTACCTTCACTAATCACTAGTGTGTTGTAAGACGTGGATTGGTTTATAGAGACACCATGAGAATTCAAAGTTACCAGTTTCAAAAAAGAAAATGACACCATGAGAATTATAAAACTCTATTAGTTGAATCAATTCTCAGTTCCATGATATAGGCACAGACAAGTTTTCTTCTGGAGTGTAACTCCACTCCTGTAGAAATCATAGGGGACTAATTAGTGTCTGAAGTTATAATAAACTTGAGAGGAAGTTATGCTGCCACACTACACTTCTCCACCCTCCAAGGAAAAGAAACCTTAAAAGAAAGAATGACTCTTTATGTGTATGAATTTCAGAAGCGGGATTTCTCTTGTCTCAAAACCTTTTCCTTTTAGCATGTGAAAGGAATGTGGGAGATGAAAAACTTCTTGTTTTAAGTCTTATTTGCCTTGCTAAAAGTCCCCTTTGGCTGGTAGGTGTGCTCACCTGGTTTGTTTTTGGCCTTTGTATATCCACCGTATTTTTTCCCTTATTGAAGACTTCACAAAATCTATACTCTATCCATCATCTATACTCTATCCATCTCCTGGTACTCATTTTCATCATTTGTGTACTTACTCTGCAATGATGTGCTTCGCCATGTATATCTATGTAGTCTAGTCAATTGAACTCTGAGTTCTTCTCAGCTAAAACTCATGCTAGAATGGTAATTGTAAATTCATATATCGTGGGGTTCATGTCCATTATTCATGTTCTTTTTAGGTACCTGGGCAATAAATTGGTGTGAAAGAATCCAAGAGAAGATTCTGAGCAGCTGTTTCAGTTGTTTGGAAAGGAAACTGATTCCTTTCATACTTAAACTCTTTGCATTTATTCGTAGTCTTCCCTTCGAGTACTGGAGGAAACGGACAAATGTTTTTCCGACTAATGCATTGGAAGAACGACAAGGGAGCAGTTCATCCATTAATGATGAAGCAGTTCAAAGAGTAAGGGAGATCCATCCATGCATGCAGCGTCTTCATAAATTGGAAAATTTA</genome_strand>
        <mrna_strand>GTTGAGTGAGAGACAGAAAAAGATACTCTCTCCGCATCTATACATATAGAGAGGGAAAACCTATATTTATAGAGAGAGAAACTCTAGAGAGAGAAAAAGCCATGTATGTGTATATATAGGCTATATAGATTACAGTGAAAAAAACTTTCTTTTTCATTCCTCCATTATTCGTTCATTCTCTCAGCTCAAAGACCACAGAATTTTCAAGAAATTTATGACGTTTTGAAGTTAAAGTTTTGGTTTTTTTCCAGATTTTTCTCGGAATTTATGATTTCAGAGAAAAAAAATCAATGCAAAAGCTCCGTTTAATGGTCGATTTAGCTTGCGTTTTGTTAGGGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGAAACTTGAGCTCGGATGGTTTTCCTGCGGAACAGCATAGATTGCTTTAAACGTTAAGAGCCACATTTCCTTCGTTATTCTTACATCCTCTTTGTTGGAAGGATGTCAG...........................................................................................................AATGGTTGGATGCATATGATGACGTAAGAGAAAGAAGATCAGACTTCGAGGTTTCAGAGGATGAAAGACGACGTTCACGAATTGGTACTTTCAAGAAAAAGGCATTACATGCTTCAAACAAGTTCACCCACTCTCTGAAGAAAAGAGGAAAAAGGAAAGTGGACTACAGGTTCCCTTCAGTTTCAATAGAGGATGTACGTGATGCAAAAGAGGAGAATGCTGTCTGTGAATTGCGTCAAAGGCTGCTAGAGCGGAATTTGTTGCCATCCATACATGATGACTACCATACATTGTTGAGATTC-TTAAAGGCAAGAGATCTCAAT--GTTGAGAAAAC-TAT-T-CCGATGTGGGAAGAAATG-C-TTAACTGGAGGAAAGA-GTTTGGAGCAGACACAATATTGCAGGATTTT...............................................................................GACTTTGACGAGTTAGAAGAAGTATTGCAGTTTTACCCACAAGGATATCATGGGGTTGATAGGGAGGGAAGACCTGTTTATATCGAAAGGCTTGGACAAGCTAATCCGAACAAACTAATGCGG-ATAACCACAATTGATCGCTACATAAAATATCATGTCCAAGAATTTGAAAGGGCACTACATGAGAAGTTCCCTGCATGTTCTGTTGCTGCAAAGAAAAGAATCTGCACAACAACTACAATTTTGGATGTGCAAGGCTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTAAGAATTTCACAAGGACAGCTGCTAGTCTTTTGGCGGCCATGGCAAAAATTGATAATAGCTATTATCCTGAG......................................................................................................ACACTGCATCGGATGTTCATTGTCAATGCTGGCCCTGGCTTCAAAAAGATGCTCTGGCCAGCAGCTCAAAAATTTCTGGATGCAAAGACTATTGCAAAGATACAG..........................................................................................................GTGCTCGATCCCAAATCCTTGGGTAAACTACATGAAGTTATTGACCCAAG..............................................................................................TCAATTGCCTGACTTTTTAGGTGGCTCTTGTACCTGTTCTGACGAGGGTGGTTGCCTCAGGTCTAACAAGGGTCCATGGAGTGATCCTGAAGTAATGAAG....................................................................................................................CTTGTCTATAATGTAGAGGCAACAACTGTGAAGGAAATCTCTAGAAAACTTGGTGACCAAAGGAAAATTGAATCCTATATACAAATACGCCCTTCAAAG..................................................................................GGAAGGAGCAGAGACACATCCACAAGTGATTCAGTATCGGATGCTGCTGACTTGTGTTCACCAATTAGAGGAAATAGTAGCTCAATTTTGAGGCTGACCCCAGTAGATGAAGAA........................................................................................................GCTAGGTCATCAGATTCAACAGCCTATTGTAGCTGTGATGATGAATTCAGCCTGGGTGATCGAGGTGTCACTAATGAGCATGGATTGCTGCATTGGCAAGAGCAGTCTCCTGTGAGCAGTCCAATGAATCGGTCCACTAATACATTGCCTCATTCTGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGGGCAATAAATTGGTGTGAAAGAATCCAAGAGAAGATTCTGAGCAGCTGTTTCAGTTGTTTGGAAAGGAAACTGATTCCTTTCATACTTAAACTCTTTGCATTTATTCGTAGTCTTCCCTTCGAGTACTGGAGGAAACGGACAAATGTTTTTCCGACTAATGCATTGGAAGAACGACAAGGGAGCAGTTCATCCATTAATGATGAAGCAGTTCAAAGAGTAAGGGAGATCCATCCATGCATGCAGCGTCTTCATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369549" ref_strand="+" ref_description="SGN-E369549 [TUS-25-D18]">
      <seq>gagacagaaaaagatactctctccgcatctatacatatagagagggaaaacctatatttatagagagagaaactctagagagagaaaaagccatgtatgtgtatatatgggctatatagattacagtgaaaaaaactttctttttcattcctccattattcgttcattctctcagctcaaagaccacagaattttcaagaaatttatgacgctttgaagttaaagttttggtttttttccagatttttctcggaatttatgatttcagagaaaaaaaatcaatgcaaaagctccgtttaatggtcgatttagcttgcgttttgttagggttcagtagtgaaacttgagctcggatggttttcctgcggaacagcatagattgctttaaacgttaagagccacatttccttcgttattcttacatcctctatgtcggaaggatgtcagatgggttggatgcatatgatgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="117823" stop="115866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117523" g_stop="117190" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117189" i_stop="116301" i_length="889">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.773" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116300" g_stop="116188" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="447" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116187" i_stop="116081" i_length="107">
            <donor d_prob="0.866" d_score="0.96"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116080" g_stop="116057" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="471" r_length="24" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E369549" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117523" e_stop="117190"/>
          <exon e_start="116300" e_stop="116188"/>
          <exon e_start="116080" e_stop="116057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACAGAAAAAGATACTCTCTCCGCATCTATACATATAGAGAGGGAAAACCTATATTTATAGAGAGAGAAACTCTAGAGAGAGAAAAAGCCATGTATGTGTATATATAGGCTATATAGATTACAGTGAAAAAAACTTTCTTTTTCATTCCTCCATTATTCGTTCATTCTCTCAGCTCAAAGACCACAGAATTTTCAAGAAATTTATGACGTTTTGAAGTTAAAGTTTTGGTTTTTTTCCAGATTTTTCTCGGAATTTATGATTTCAGAGAAAAAAAATCAATGCAAAAGCTCCGTTTAATGGTCGATTTAGCTTGCGTTTTGTTAGGGTTCAGGTGAGTTTTTTTTTTTGTGGGATTTTGTTTATATGAGTTAAAAACTAGAAAGTTCTTATTTTTATTGTGTGTTTCGATTTTTTAGATGGTTTTTGTTATTAATTGGGATTAATTATGATGTGGGGGTTGTGAGATCTGAGCTAAATTTACTGGCTTGAAACAGTTTGATTGAGTTTTTTTTCCATGTGATCAGCAATTTGCTGATTTTTGTATTTACCAACTTTTTTTTGAGACNCTAAGTTTTTCGATGGGATCGGAAACTTAGCATTTCCGTGAATGCAGTTATCAGTTTAAGAAATGTTCATGATGGTCAATACAATTTGGGGTATGTGATATAGAAAATCTCAGCTAGTTTGTGATTTGAGGCATAGTTGATTGATTAGTTGGATATATGGGTGTAGAGTGTTTGACAATGCACACAGTGTGGGGTTGATTTCTCGGATGGTGGCTCAATTAAAAGTTATTAGCTCTGAAAGAAAATGTGTAAGCTTTTCTAGTGACCCCATGAGAAATTTGTGCATTTTGGATTTAGATCTGTGAAGGCAATTTAATTTATAGGGATAGAACTGGCAGGAAATGGATTTTCAGTTTCCCAGTTTTTATTTATTGGTTCCTGACAGCACTACTTCACTATAATGTGTATGCTGTTCTAGTCGTTGCGTGTTGCGCAAGCACTGACAATTGAAATCAGTGGACTTCTAGTAAATGAAATAGAGGACTCTCTCTGCATAGGAAGAATGAGTTTCAAATTTTTAGGAAGATACGTGTCACTTTCATCATTTAATGTTCTTCTTATCTTCCAGATATTAGTTAATGTGTCATCTTTTCATTTCTTTCTGCTGTGTTAAGTTGAGATTTTGACTGGAGTTGCTTTTTGTCCCATATTTAGTAGTGAAACTTGAGCTCGGATGGTTTTCCTGCGGAACAGCATAGATTGCTTTAAACGTTAAGAGCCACATTTCCTTCGTTATTCTTACATCCTCTTTGTTGGAAGGATGTCAGGTTTGTGCTTGCTATTTAATAATTGACTTTAGGAACTGTTATGGATGATTTAGTTTGTAATTTAAGAACTCATATACGCATATTCTGCGTGATATCTTGTATTCTAGAATGGTTGGATGCATATGATGACG</genome_strand>
        <mrna_strand>GAGACAGAAAAAGATACTCTCTCCGCATCTATACATATAGAGAGGGAAAACCTATATTTATAGAGAGAGAAACTCTAGAGAGAGAAAAAGCCATGTATGTGTATATATGGGCTATATAGATTACAGTGAAAAAAACTTTCTTTTTCATTCCTCCATTATTCGTTCATTCTCTCAGCTCAAAGACCACAGAATTTTCAAGAAATTTATGACGCTTTGAAGTTAAAGTTTTGGTTTTTTTCCAGATTTTTCTCGGAATTTATGATTTCAGAGAAAAAAAATCAATGCAAAAGCTCCGTTTAATGGTCGATTTAGCTTGCGTTTTGTTAGGGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGAAACTTGAGCTCGGATGGTTTTCCTGCGGAACAGCATAGATTGCTTTAAACGTTAAGAGCCACATTTCCTTCGTTATTCTTACATCCTCTATGTCGGAAGGATGTCAG...........................................................................................................ATGGGTTGGATGCATATGATGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247126" ref_strand="+" ref_description="SGN-E247126 [cLEF-46-O13]">
      <seq>gagacagaaaaagatactctctccgcatctatagatatagagagggaaaacctatatttatagagagagaaactctagagagagaaaaagccatgtatgtgtatatataggctatatagattacagtgaaaaaaactttctttttcattcctccattattcgttcattctctcagctcaaagaccacagaattttcaagaaatttatgacgttttgaagttaaagttttggtttttttccagatttttctcggaatttatgatttcagagaaaaaaaatcaatgcaaaagctccgtttaatggtcgatttagcttgcgttttgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="117823" stop="116897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117523" g_stop="117197" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E247126" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117523" e_stop="117197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACAGAAAAAGATACTCTCTCCGCATCTATACATATAGAGAGGGAAAACCTATATTTATAGAGAGAGAAACTCTAGAGAGAGAAAAAGCCATGTATGTGTATATATAGGCTATATAGATTACAGTGAAAAAAACTTTCTTTTTCATTCCTCCATTATTCGTTCATTCTCTCAGCTCAAAGACCACAGAATTTTCAAGAAATTTATGACGTTTTGAAGTTAAAGTTTTGGTTTTTTTCCAGATTTTTCTCGGAATTTATGATTTCAGAGAAAAAAAATCAATGCAAAAGCTCCGTTTAATGGTCGATTTAGCTTGCGTTTTGTTAG</genome_strand>
        <mrna_strand>GAGACAGAAAAAGATACTCTCTCCGCATCTATAGATATAGAGAGGGAAAACCTATATTTATAGAGAGAGAAACTCTAGAGAGAGAAAAAGCCATGTATGTGTATATATAGGCTATATAGATTACAGTGAAAAAAACTTTCTTTTTCATTCCTCCATTATTCGTTCATTCTCTCAGCTCAAAGACCACAGAATTTTCAAGAAATTTATGACGTTTTGAAGTTAAAGTTTTGGTTTTTTTCCAGATTTTTCTCGGAATTTATGATTTCAGAGAAAAAAAATCAATGCAAAAGCTCCGTTTAATGGTCGATTTAGCTTGCGTTTTGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724570" ref_strand="+" ref_description="SGN-E724570 [FC24CA10]">
      <seq>aatcggccgaattagtttgcagcctcccctaaaactctcttctctcgaaagaaaaagtgataagtctcgcaaattcgttatggcttcaaagaggattcagaaggaattgaaggacttgcagaaagacccccctgcttcctgcagtgcaggccctgtaggtcaggatatgttccattggcaagctaccataatgggtccatctgacagtccgttttctgggggtgttttccttgcatctatccatttccctccagattatcctttcaagcccccaaaggtctctttcaaaaccaaggttttccacccaaacatcaacagtaatggtagtatttgtcttgatatcctaaaggaacaatggagccctgctcttactgtatccaaggtgctgctttctatttgctctttgcttactgatcccaatccagatgatcctttagtgccagagattgctcacatgtacaagacggatagaccgaagtatgagagtactgccagatcatggacccagaaatacgcaatgggttgaacacatctgtttctactttcatgaatatcatcgaacctttattctatagtagtaaataaacttaggcatggtgcacaatttatagatattggtgtttcttgttttctggtatattgccttttaagtttttgactggttaacgatttatcatttggtgaaacttaagatatgtttttgttgacnannaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="122270" stop="70291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121966" g_stop="121924" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="57" r_length="42" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121923" i_stop="120757" i_length="1167">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120756" g_stop="120665" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="149" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120664" i_stop="120268" i_length="397">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120267" g_stop="120140" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="277" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120139" i_stop="119361" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119360" g_stop="119256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="382" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119255" i_stop="119166" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119165" g_stop="118844" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="704" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118843" i_stop="117612" i_length="1232">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.308" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="117611" g_stop="117559" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="757" r_length="53" r_score="0.660"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E724570" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121966" e_stop="121924"/>
          <exon e_start="120756" e_stop="120665"/>
          <exon e_start="120267" e_stop="120140"/>
          <exon e_start="119360" e_stop="119256"/>
          <exon e_start="119165" e_stop="118844"/>
          <exon e_start="117611" e_stop="117559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGCCTCCATCAAAAACTCTCTTCTCTCGAAAGAAAAAGGTTCGTAACCCTTAAAGAATTTTTTAACCCTACCGATTTCTCTGTCTTTTTTTTTTTTTTGCAAAATTGATCATGTTTGTTTGTTATGTTTTTGTTTATCTTTTTGCTGTAATTTTTCTGGATTTATATGGTGGTTTGCCGATTTTTTGTTTTCATTGTGAAAGAAGTAGTGGATGTACTCTGTTTCTGTTTTAATGTAGGCGTGATGAGAAGAGAATTTATAAAGCTGATTCTGTTTAGTTTTGTATAGATACTAGTAGTACTAGTAAGTTGATTGTTTATTTTGAGGAACTGCTGTGATGAATCATTTTTTAATTAAAAAAAGGTTCATTTTTTAAGGTTTCACTTTCTTTAACATCAAAACAGGAAAAGGGGACTTTTTTGTTTGTTTGTGGAGTCCTGGAAAAAATTGGATTCTTGTTTTGGGTTGGTATGCGTTACTGCAGGGGCGGAGTTAGGTAGGGTTAAGGCGAACCCACCGTTTCGTTTATGTAGGAGTTTTTACGTATATATATATATATAGTGGATATTGAATTCCGTCACTTCTTTTGTGTATTTGTTTTTTCCTGTTTTTGTACTTAAGGTTGGTGAGATCCTAGGCGAATGTTTCTTGATCATTATCTGTGTGATAAAAGCTGGGATGTAATGGTTGTCCCTGTTGTTGGTGTTAATGGTTATATTAATTTATTTGGTTTCCTGTTCCAAGTTAAAATTCTGATCATTATCTCTTAGATAGAGACTAGGATGTGATGGTTTCTGCGGGTTATTAATGTTTTTGTATATTTTGAGGCCATTGATTATGGTAAAAAACCTTTCTTTAGGAAGGGGGAGAGTGTTTTACATTGTCTGGAACTTCATTGTCTTTTCTCTTGCCTGAGTTTCACCAATGTAGTGTAATAGTTCTTGCCTGCTCCTCTGCACTTACAGGAGCAGCACCGGAGAGGAAAATACATATTCTCTTTAGTAGTATATGTAGTTTCAACTCCTACGCATTGCTGCAGTTCGCTTCTCCTTAATGCAACGCTTTTACCTTGAAAAAAAGTGCATACCGTAACAACTTCTATGAAATTATTTTTGAAGTGTAATCATCTTTTACTAAAGAAAAAATTCTAATTCTTGATTATTTGGCCTTCCTTTGGCATTATTGGTTTGGATTTCTTTTTGCAGTGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAGGTATATATGAGTGTGACTTGTTCTTGCTTAATGTCTCTTTATAGCCATGCTCAATAGATATCCCCTCTCGTCTTCCCCATATCTGCAGCTTGGATTTGTGTTGGAAATATTTGAGACACATCAGATATGTGCTGGGAACAATCTGATGATTTCTTTCCCCTACCATCCGATGGGTAGTCATTACTTACTGTTCATTTGGTCCTCTTCTTCTTTGTTTCCCTTTCCCCCTTATGTTGGTTGAGGTTTGGGGTAGGATTGACTGAATAACTGGTGACAATTCTTTTGGTTCTGTTAATATTTTGTTAAGACATGTCTGCACTTGTGTTGGTATTTGTGAAAATTGTTTACTTTCAATTTGGATGCTGTTTTGGGCTGAAAATTGTTTTGCTTCTTGCAGGCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAGGTAGTTTTGAAGTCTTGCCAAGTTTTTTTTTTTTTTTGTGTGTGTTTTGTAAAATTTCTCTTGCTCCTATTTCTAACATTCCTTACCTTAGCAATTCTGTCTTGCCGTGGAGTACAACTATTTACTGCAAGAGTTTCCAGTAGATTAAACCTGAACTCCAATGTATTTGTTATACATATTTGTTATTTGATATGTTTTACATGAGCTGATGTCTCATCGGAGATAATCTATCTACCTCCACAAGGTAGGGCAATGCTGCGCACACATCACCCTCCCGAACTCCACAAGTTGGATCACACTTGATTTGGTGTTGTTGTTGTTGTATGTTAGGTCCGATAAAACTTAATGTTCCAATATTTGCTGTGATGGTAAAATATATTATTAAACCAAGTAACACAGAAATGGAGTTTTTCAAGCAACCTAGGGTTGTTCAAAAGACGCAAAATCCTGCATCTACCAGGATGGATTTGGCTCTAGACAACCATTGGCGTTCAATTCTTTTTCTTGTTGGATCTCAGTATGGATGTTTGCCATTCTTTTATTTGCCTTTGATGTGTTTTATGTAGTCCTTGCTTAAATGATTTATACTCGCGTTTCACTATATAGAAGAACCCATTCTCAGCTTCCTTGTGTATCATTGGAATAACCAAGGACAATTATGTGCTATTGTTTTTGCTTGTTACATGTAAATACCAGCAAATGCCATCTCCCTTGTATTTCTCGATTCTTAATTTGTTGCAAAACCCTGCTTTACTTTGTTTTGACTCTTAATACTGTAGGTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAGGTAAAGTATATCATGCTCTTCTTAGCTCAATTCTAAAGCATCTGCTTTATGTATATACATTTTGGTGACAATTATGCTGGGAGATTGCAGGTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGCATGGTGCACAATTTATAGATATTGGTGTTTCTTGTTTTCTGGTATATTGCCTTTTAAGTTTTTGACTGGTTAACGATTTATCATTTGGTGAAACTTAAGATATGTTTTTGTTGACATGTGAAGTCTTCTCTTTTTTCGCTCGTCGCTATTTTTTTAAAAAATAACTTCAAGAGTTCCATGTGTAGAACTTGAGACTTGAGGATAGTGGTTAATTTTCAATTATAAGGATCGAACAAATGACTATTTGTTCATAGTTGGTTAACCTTATTCTAAGGTAAAGTTGTTGGCTGTGTGGCTAATGGACCAAATTTGGTCAATATAGTTTGTTAGTTTTTGCTTTTTAAGCAGAAAAAAGAGAGGTAACTTTATTCAGCTAACACATGGTAAGGTGGAAAAGTTAGCATGTAAAACAAGAGTAAGAACAAAGATGGTTAAATTATATTATTACAGAAGAAGAAAGGGATTTCACAAGATCCTATGAATAGGACCATAAAATGAAATGTCACCTTCATCTTTCAAATTTTTTATTCTTATATACTTAGAATGGAGAAAGAATTCAAAAATCTTTTAACTTGTTTCTCTGGTTAACACAAAGCAAAAGGAATATGTACATATTGTAGTTAGATGTATACAAAAATGTGAAGTGGTCCTCTCCATCTCTACTCTACTGTATCAGAGTGTTGTCACATTTTTAAGTTTAGCCAGCTTTATATGAGAAACAAACTAACAATATTACAAATATGTAGCCACAAAATTGGTATATAGGAGTGTATGAGACAAAAACAAGTCTCTATTGGAGTAAAACCATTTTATTTATTTATTTCAAATTCATCTCATACATTTGCTCTTGAAATCACCTTCTTGGTGAGGGTACGATTTGTCACCTTGTAATTCCCTTCCCGTTTTCCCTTTTCCTAGAAAAAACCTTTGTATATTTGATTTTTTTCAAAGATTTCTTGTCATGTTTGTCTTACTTCTTTGTATTGAGTCGACGTTCTAGTGGAAACATTATTTCCATCTCATAAAGATAGATGTAAGATATACTTGTATTATACTTTTGGAAATACTATTTTACTTTTCAAACAATTAAAGTCTGAGTTCATATCTTAGATATAAAAGTTCTAAAACCACTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAATTAATGGAGTTTCGATATGAAATTGAAAATAATAAATTTAAATAAAAGTATTTAAGCACGCTGTTTACTTTTTCTCTTATTTTGAATTTTATGCTTAAAAAGTGACACGTAAAGATTACAAGAAAAATAGAAAAAGCAAATAAGAATAATAAAAA</genome_strand>
        <mrna_strand>TTTGCAGCCTCC-CCTAAAACTCTCTTCTCTCGAAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAG..........................................................................................GTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGCATGGTGCACAATTTATAGATATTGGTGTTTCTTGTTTTCTGGTATATTGCCTTTTAAGTTTTTGACTGGTTAACGATTTATCATTTGGTGAAACTTAAGATATGTTTTTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACNANNAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725374" ref_strand="+" ref_description="SGN-E725374 [FC26DF04]">
      <seq>agtttgcagcctcccctaaaactctcttctctcgaaagaaaaagtgataagtctcgcaaattcgttatggcttcaaagaggattcaaaaggaattgaaggacttgcagaaagacccccctgcttcctgcagtgcaggccctgtaggtcaggatatgttccattggcaagctaccataatgggtccatctgacagtccgttttctgggggtgttttccttgcatctatccatttccctccagattatcctttcaagcccccaaaggtctctttcaaaaccaaggttttccacccaaacatcaacagtaatggtagtatttgtcttgatatcctaaaggaacaatggagccctgctcttactgtatccaaggtgctgctttctatttgctctttgcttactgatcccaatccagatgatcctttagtgccagagattgctcacatgtacaagacggatagaccgaagtatgagagtactgccagatcatggacccagaaatacgcaatgggttgaacacatctgtttctactttcatgaatatcatcgaacctttattctatagtagtaaataaacttaggcatggtgcacaatttatagatattggtgtttcttgttttctggtatattgccttttaagtttttgactggttaacgatttatcatttggtgaaacttaagatatgtttttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="122268" stop="118543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121968" g_stop="121924" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121923" i_stop="120757" i_length="1167">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120756" g_stop="120665" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="136" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120664" i_stop="120268" i_length="397">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120267" g_stop="120140" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="264" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120139" i_stop="119361" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119360" g_stop="119256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="369" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119255" i_stop="119166" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119165" g_stop="118843" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="692" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E725374" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121968" e_stop="121924"/>
          <exon e_start="120756" e_stop="120665"/>
          <exon e_start="120267" e_stop="120140"/>
          <exon e_start="119360" e_stop="119256"/>
          <exon e_start="119165" e_stop="118843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGCAGCCTCCATCAAAAACTCTCTTCTCTCGAAAGAAAAAGGTTCGTAACCCTTAAAGAATTTTTTAACCCTACCGATTTCTCTGTCTTTTTTTTTTTTTTGCAAAATTGATCATGTTTGTTTGTTATGTTTTTGTTTATCTTTTTGCTGTAATTTTTCTGGATTTATATGGTGGTTTGCCGATTTTTTGTTTTCATTGTGAAAGAAGTAGTGGATGTACTCTGTTTCTGTTTTAATGTAGGCGTGATGAGAAGAGAATTTATAAAGCTGATTCTGTTTAGTTTTGTATAGATACTAGTAGTACTAGTAAGTTGATTGTTTATTTTGAGGAACTGCTGTGATGAATCATTTTTTAATTAAAAAAAGGTTCATTTTTTAAGGTTTCACTTTCTTTAACATCAAAACAGGAAAAGGGGACTTTTTTGTTTGTTTGTGGAGTCCTGGAAAAAATTGGATTCTTGTTTTGGGTTGGTATGCGTTACTGCAGGGGCGGAGTTAGGTAGGGTTAAGGCGAACCCACCGTTTCGTTTATGTAGGAGTTTTTACGTATATATATATATATAGTGGATATTGAATTCCGTCACTTCTTTTGTGTATTTGTTTTTTCCTGTTTTTGTACTTAAGGTTGGTGAGATCCTAGGCGAATGTTTCTTGATCATTATCTGTGTGATAAAAGCTGGGATGTAATGGTTGTCCCTGTTGTTGGTGTTAATGGTTATATTAATTTATTTGGTTTCCTGTTCCAAGTTAAAATTCTGATCATTATCTCTTAGATAGAGACTAGGATGTGATGGTTTCTGCGGGTTATTAATGTTTTTGTATATTTTGAGGCCATTGATTATGGTAAAAAACCTTTCTTTAGGAAGGGGGAGAGTGTTTTACATTGTCTGGAACTTCATTGTCTTTTCTCTTGCCTGAGTTTCACCAATGTAGTGTAATAGTTCTTGCCTGCTCCTCTGCACTTACAGGAGCAGCACCGGAGAGGAAAATACATATTCTCTTTAGTAGTATATGTAGTTTCAACTCCTACGCATTGCTGCAGTTCGCTTCTCCTTAATGCAACGCTTTTACCTTGAAAAAAAGTGCATACCGTAACAACTTCTATGAAATTATTTTTGAAGTGTAATCATCTTTTACTAAAGAAAAAATTCTAATTCTTGATTATTTGGCCTTCCTTTGGCATTATTGGTTTGGATTTCTTTTTGCAGTGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAGGTATATATGAGTGTGACTTGTTCTTGCTTAATGTCTCTTTATAGCCATGCTCAATAGATATCCCCTCTCGTCTTCCCCATATCTGCAGCTTGGATTTGTGTTGGAAATATTTGAGACACATCAGATATGTGCTGGGAACAATCTGATGATTTCTTTCCCCTACCATCCGATGGGTAGTCATTACTTACTGTTCATTTGGTCCTCTTCTTCTTTGTTTCCCTTTCCCCCTTATGTTGGTTGAGGTTTGGGGTAGGATTGACTGAATAACTGGTGACAATTCTTTTGGTTCTGTTAATATTTTGTTAAGACATGTCTGCACTTGTGTTGGTATTTGTGAAAATTGTTTACTTTCAATTTGGATGCTGTTTTGGGCTGAAAATTGTTTTGCTTCTTGCAGGCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAGGTAGTTTTGAAGTCTTGCCAAGTTTTTTTTTTTTTTTGTGTGTGTTTTGTAAAATTTCTCTTGCTCCTATTTCTAACATTCCTTACCTTAGCAATTCTGTCTTGCCGTGGAGTACAACTATTTACTGCAAGAGTTTCCAGTAGATTAAACCTGAACTCCAATGTATTTGTTATACATATTTGTTATTTGATATGTTTTACATGAGCTGATGTCTCATCGGAGATAATCTATCTACCTCCACAAGGTAGGGCAATGCTGCGCACACATCACCCTCCCGAACTCCACAAGTTGGATCACACTTGATTTGGTGTTGTTGTTGTTGTATGTTAGGTCCGATAAAACTTAATGTTCCAATATTTGCTGTGATGGTAAAATATATTATTAAACCAAGTAACACAGAAATGGAGTTTTTCAAGCAACCTAGGGTTGTTCAAAAGACGCAAAATCCTGCATCTACCAGGATGGATTTGGCTCTAGACAACCATTGGCGTTCAATTCTTTTTCTTGTTGGATCTCAGTATGGATGTTTGCCATTCTTTTATTTGCCTTTGATGTGTTTTATGTAGTCCTTGCTTAAATGATTTATACTCGCGTTTCACTATATAGAAGAACCCATTCTCAGCTTCCTTGTGTATCATTGGAATAACCAAGGACAATTATGTGCTATTGTTTTTGCTTGTTACATGTAAATACCAGCAAATGCCATCTCCCTTGTATTTCTCGATTCTTAATTTGTTGCAAAACCCTGCTTTACTTTGTTTTGACTCTTAATACTGTAGGTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAGGTAAAGTATATCATGCTCTTCTTAGCTCAATTCTAAAGCATCTGCTTTATGTATATACATTTTGGTGACAATTATGCTGGGAGATTGCAGGTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGCATGGTGCACAATTTATAGATATTGGTGTTTCTTGTTTTCTGGTATATTGCCTTTTAAGTTTTTGACTGGTTAACGATTTATCATTTGGTGAAACTTAAGATATGTTTTTGTT</genome_strand>
        <mrna_strand>AGTTTGCAGCCTCC-CCTAAAACTCTCTTCTCTCGAAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAAAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAG..........................................................................................GTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGCATGGTGCACAATTTATAGATATTGGTGTTTCTTGTTTTCTGGTATATTGCCTTTTAAGTTTTTGACTGGTTAACGATTTATCATTTGGTGAAACTTAAGATATGTTTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555649" ref_strand="+" ref_description="SGN-E555649 [cTSC-6-M6]">
      <seq>cctccatcaaaaactctcttctctcgaaagaaaaagtgataagtctcgcaaattcgttatggcttcaaagaggattcagaaggaattgaaggacttgcagaaagacccccctgcttcctgcagtgcaggccctgtaggtcaggatatgttccattggcaagctaccataatgggtccatctgacagtccgttttctgggggtgttttccttgcatctatccatttccctccagattatcctttcaagcccccaaaggtctctttcaaaaccaaggttttccacccaaacatcaacagtaatggtagtatttgtcttgatatcctaaaggaacaatggagccctgctcttactgtatccaaggtgctgctttctatttgctctttgcttactgatcccaatccagatgatcctttagtgccagagattgctcacatgtacaagacggatagaccgaagtatgagagtactgccagatcatggacccagaaatacgcaatgggttgaacacatctgtttctactttcatgaatatcatcgaacctttattctatagtagtaaataaacttaggcatggtgcacaatttatagatattggtgtttcttgttttctggtatattgccttttaagtttttgactggttaacgatttatcatttggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="122259" stop="118564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121959" g_stop="121924" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121923" i_stop="120757" i_length="1167">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120756" g_stop="120665" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="128" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120664" i_stop="120268" i_length="397">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120267" g_stop="120140" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="256" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120139" i_stop="119361" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119360" g_stop="119256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="361" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119255" i_stop="119166" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119165" g_stop="118864" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="663" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E555649" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121959" e_stop="121924"/>
          <exon e_start="120756" e_stop="120665"/>
          <exon e_start="120267" e_stop="120140"/>
          <exon e_start="119360" e_stop="119256"/>
          <exon e_start="119165" e_stop="118864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCATCAAAAACTCTCTTCTCTCGAAAGAAAAAGGTTCGTAACCCTTAAAGAATTTTTTAACCCTACCGATTTCTCTGTCTTTTTTTTTTTTTTGCAAAATTGATCATGTTTGTTTGTTATGTTTTTGTTTATCTTTTTGCTGTAATTTTTCTGGATTTATATGGTGGTTTGCCGATTTTTTGTTTTCATTGTGAAAGAAGTAGTGGATGTACTCTGTTTCTGTTTTAATGTAGGCGTGATGAGAAGAGAATTTATAAAGCTGATTCTGTTTAGTTTTGTATAGATACTAGTAGTACTAGTAAGTTGATTGTTTATTTTGAGGAACTGCTGTGATGAATCATTTTTTAATTAAAAAAAGGTTCATTTTTTAAGGTTTCACTTTCTTTAACATCAAAACAGGAAAAGGGGACTTTTTTGTTTGTTTGTGGAGTCCTGGAAAAAATTGGATTCTTGTTTTGGGTTGGTATGCGTTACTGCAGGGGCGGAGTTAGGTAGGGTTAAGGCGAACCCACCGTTTCGTTTATGTAGGAGTTTTTACGTATATATATATATATAGTGGATATTGAATTCCGTCACTTCTTTTGTGTATTTGTTTTTTCCTGTTTTTGTACTTAAGGTTGGTGAGATCCTAGGCGAATGTTTCTTGATCATTATCTGTGTGATAAAAGCTGGGATGTAATGGTTGTCCCTGTTGTTGGTGTTAATGGTTATATTAATTTATTTGGTTTCCTGTTCCAAGTTAAAATTCTGATCATTATCTCTTAGATAGAGACTAGGATGTGATGGTTTCTGCGGGTTATTAATGTTTTTGTATATTTTGAGGCCATTGATTATGGTAAAAAACCTTTCTTTAGGAAGGGGGAGAGTGTTTTACATTGTCTGGAACTTCATTGTCTTTTCTCTTGCCTGAGTTTCACCAATGTAGTGTAATAGTTCTTGCCTGCTCCTCTGCACTTACAGGAGCAGCACCGGAGAGGAAAATACATATTCTCTTTAGTAGTATATGTAGTTTCAACTCCTACGCATTGCTGCAGTTCGCTTCTCCTTAATGCAACGCTTTTACCTTGAAAAAAAGTGCATACCGTAACAACTTCTATGAAATTATTTTTGAAGTGTAATCATCTTTTACTAAAGAAAAAATTCTAATTCTTGATTATTTGGCCTTCCTTTGGCATTATTGGTTTGGATTTCTTTTTGCAGTGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAGGTATATATGAGTGTGACTTGTTCTTGCTTAATGTCTCTTTATAGCCATGCTCAATAGATATCCCCTCTCGTCTTCCCCATATCTGCAGCTTGGATTTGTGTTGGAAATATTTGAGACACATCAGATATGTGCTGGGAACAATCTGATGATTTCTTTCCCCTACCATCCGATGGGTAGTCATTACTTACTGTTCATTTGGTCCTCTTCTTCTTTGTTTCCCTTTCCCCCTTATGTTGGTTGAGGTTTGGGGTAGGATTGACTGAATAACTGGTGACAATTCTTTTGGTTCTGTTAATATTTTGTTAAGACATGTCTGCACTTGTGTTGGTATTTGTGAAAATTGTTTACTTTCAATTTGGATGCTGTTTTGGGCTGAAAATTGTTTTGCTTCTTGCAGGCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAGGTAGTTTTGAAGTCTTGCCAAGTTTTTTTTTTTTTTTGTGTGTGTTTTGTAAAATTTCTCTTGCTCCTATTTCTAACATTCCTTACCTTAGCAATTCTGTCTTGCCGTGGAGTACAACTATTTACTGCAAGAGTTTCCAGTAGATTAAACCTGAACTCCAATGTATTTGTTATACATATTTGTTATTTGATATGTTTTACATGAGCTGATGTCTCATCGGAGATAATCTATCTACCTCCACAAGGTAGGGCAATGCTGCGCACACATCACCCTCCCGAACTCCACAAGTTGGATCACACTTGATTTGGTGTTGTTGTTGTTGTATGTTAGGTCCGATAAAACTTAATGTTCCAATATTTGCTGTGATGGTAAAATATATTATTAAACCAAGTAACACAGAAATGGAGTTTTTCAAGCAACCTAGGGTTGTTCAAAAGACGCAAAATCCTGCATCTACCAGGATGGATTTGGCTCTAGACAACCATTGGCGTTCAATTCTTTTTCTTGTTGGATCTCAGTATGGATGTTTGCCATTCTTTTATTTGCCTTTGATGTGTTTTATGTAGTCCTTGCTTAAATGATTTATACTCGCGTTTCACTATATAGAAGAACCCATTCTCAGCTTCCTTGTGTATCATTGGAATAACCAAGGACAATTATGTGCTATTGTTTTTGCTTGTTACATGTAAATACCAGCAAATGCCATCTCCCTTGTATTTCTCGATTCTTAATTTGTTGCAAAACCCTGCTTTACTTTGTTTTGACTCTTAATACTGTAGGTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAGGTAAAGTATATCATGCTCTTCTTAGCTCAATTCTAAAGCATCTGCTTTATGTATATACATTTTGGTGACAATTATGCTGGGAGATTGCAGGTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGCATGGTGCACAATTTATAGATATTGGTGTTTCTTGTTTTCTGGTATATTGCCTTTTAAGTTTTTGACTGGTTAACGATTTATCATTTGGTGA</genome_strand>
        <mrna_strand>CCTCCATCAAAAACTCTCTTCTCTCGAAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAG..........................................................................................GTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGCATGGTGCACAATTTATAGATATTGGTGTTTCTTGTTTTCTGGTATATTGCCTTTTAAGTTTTTGACTGGTTAACGATTTATCATTTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551457" ref_strand="+" ref_description="SGN-E551457 [TUS-54-K16]">
      <seq>aaactctcttctctcgaaagaaaaagtgataagtctcgcaaattcgttatggcttcaaagaggattcagaaggaattgaaggacttgcagaaagacccccctgcttcctgcagtgcaggccctgtaggtcaggatatgttccattggcaagctaccataatgggtccatctgacagtccgttttctgggggtgttttccttgcatctatccatttccctccagattatcctttcaagcccccaaaggtctctttcaaaaccaaggttttccacccaaacatcaacagtaatggtagtatttgtcttgatatcctaaaggaacaatggagccctgctcttactgtatccnaggtgctgctttctatttgctctttgcttactgatcccaatccagatgatcctttagtgccagagattgctcacatgtacaagacggatagaccgaagtatgagagtactgccagatcatggacccagaaatacgcaatgggttgaacacatctgtttctactttcatgaatatcatcgaacctttattctatagtagtaaataaacttaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="122249" stop="118655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121949" g_stop="121924" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121923" i_stop="120757" i_length="1167">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120756" g_stop="120665" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="118" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120664" i_stop="120268" i_length="397">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120267" g_stop="120140" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="246" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120139" i_stop="119361" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119360" g_stop="119256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="351" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119255" i_stop="119166" i_length="90">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119165" g_stop="118955" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="562" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E551457" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121949" e_stop="121924"/>
          <exon e_start="120756" e_stop="120665"/>
          <exon e_start="120267" e_stop="120140"/>
          <exon e_start="119360" e_stop="119256"/>
          <exon e_start="119165" e_stop="118955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTCTTCTCTCGAAAGAAAAAGGTTCGTAACCCTTAAAGAATTTTTTAACCCTACCGATTTCTCTGTCTTTTTTTTTTTTTTGCAAAATTGATCATGTTTGTTTGTTATGTTTTTGTTTATCTTTTTGCTGTAATTTTTCTGGATTTATATGGTGGTTTGCCGATTTTTTGTTTTCATTGTGAAAGAAGTAGTGGATGTACTCTGTTTCTGTTTTAATGTAGGCGTGATGAGAAGAGAATTTATAAAGCTGATTCTGTTTAGTTTTGTATAGATACTAGTAGTACTAGTAAGTTGATTGTTTATTTTGAGGAACTGCTGTGATGAATCATTTTTTAATTAAAAAAAGGTTCATTTTTTAAGGTTTCACTTTCTTTAACATCAAAACAGGAAAAGGGGACTTTTTTGTTTGTTTGTGGAGTCCTGGAAAAAATTGGATTCTTGTTTTGGGTTGGTATGCGTTACTGCAGGGGCGGAGTTAGGTAGGGTTAAGGCGAACCCACCGTTTCGTTTATGTAGGAGTTTTTACGTATATATATATATATAGTGGATATTGAATTCCGTCACTTCTTTTGTGTATTTGTTTTTTCCTGTTTTTGTACTTAAGGTTGGTGAGATCCTAGGCGAATGTTTCTTGATCATTATCTGTGTGATAAAAGCTGGGATGTAATGGTTGTCCCTGTTGTTGGTGTTAATGGTTATATTAATTTATTTGGTTTCCTGTTCCAAGTTAAAATTCTGATCATTATCTCTTAGATAGAGACTAGGATGTGATGGTTTCTGCGGGTTATTAATGTTTTTGTATATTTTGAGGCCATTGATTATGGTAAAAAACCTTTCTTTAGGAAGGGGGAGAGTGTTTTACATTGTCTGGAACTTCATTGTCTTTTCTCTTGCCTGAGTTTCACCAATGTAGTGTAATAGTTCTTGCCTGCTCCTCTGCACTTACAGGAGCAGCACCGGAGAGGAAAATACATATTCTCTTTAGTAGTATATGTAGTTTCAACTCCTACGCATTGCTGCAGTTCGCTTCTCCTTAATGCAACGCTTTTACCTTGAAAAAAAGTGCATACCGTAACAACTTCTATGAAATTATTTTTGAAGTGTAATCATCTTTTACTAAAGAAAAAATTCTAATTCTTGATTATTTGGCCTTCCTTTGGCATTATTGGTTTGGATTTCTTTTTGCAGTGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAGGTATATATGAGTGTGACTTGTTCTTGCTTAATGTCTCTTTATAGCCATGCTCAATAGATATCCCCTCTCGTCTTCCCCATATCTGCAGCTTGGATTTGTGTTGGAAATATTTGAGACACATCAGATATGTGCTGGGAACAATCTGATGATTTCTTTCCCCTACCATCCGATGGGTAGTCATTACTTACTGTTCATTTGGTCCTCTTCTTCTTTGTTTCCCTTTCCCCCTTATGTTGGTTGAGGTTTGGGGTAGGATTGACTGAATAACTGGTGACAATTCTTTTGGTTCTGTTAATATTTTGTTAAGACATGTCTGCACTTGTGTTGGTATTTGTGAAAATTGTTTACTTTCAATTTGGATGCTGTTTTGGGCTGAAAATTGTTTTGCTTCTTGCAGGCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAGGTAGTTTTGAAGTCTTGCCAAGTTTTTTTTTTTTTTTGTGTGTGTTTTGTAAAATTTCTCTTGCTCCTATTTCTAACATTCCTTACCTTAGCAATTCTGTCTTGCCGTGGAGTACAACTATTTACTGCAAGAGTTTCCAGTAGATTAAACCTGAACTCCAATGTATTTGTTATACATATTTGTTATTTGATATGTTTTACATGAGCTGATGTCTCATCGGAGATAATCTATCTACCTCCACAAGGTAGGGCAATGCTGCGCACACATCACCCTCCCGAACTCCACAAGTTGGATCACACTTGATTTGGTGTTGTTGTTGTTGTATGTTAGGTCCGATAAAACTTAATGTTCCAATATTTGCTGTGATGGTAAAATATATTATTAAACCAAGTAACACAGAAATGGAGTTTTTCAAGCAACCTAGGGTTGTTCAAAAGACGCAAAATCCTGCATCTACCAGGATGGATTTGGCTCTAGACAACCATTGGCGTTCAATTCTTTTTCTTGTTGGATCTCAGTATGGATGTTTGCCATTCTTTTATTTGCCTTTGATGTGTTTTATGTAGTCCTTGCTTAAATGATTTATACTCGCGTTTCACTATATAGAAGAACCCATTCTCAGCTTCCTTGTGTATCATTGGAATAACCAAGGACAATTATGTGCTATTGTTTTTGCTTGTTACATGTAAATACCAGCAAATGCCATCTCCCTTGTATTTCTCGATTCTTAATTTGTTGCAAAACCCTGCTTTACTTTGTTTTGACTCTTAATACTGTAGGTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAGGTAAAGTATATCATGCTCTTCTTAGCTCAATTCTAAAGCATCTGCTTTATGTATATACATTTTGGTGACAATTATGCTGGGAGATTGCAGGTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGC</genome_strand>
        <mrna_strand>AAACTCTCTTCTCTCGAAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCNAG..........................................................................................GTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688745" ref_strand="+" ref_description="SGN-E688745 [t3_tus_54_K16]">
      <seq>aaactctcttctctcgaaagaaaaagtgataagtctcgcaaattcgttatggcttcaaagaggattcagaaggaattgaaggacttgcagaaagacccccctgcttcctgcagtgcaggccctgtaggtcaggatatgttccattggcaagctaccataatgggtccatctgacagtccgttttctgggggtgttttccttgcatctatccatttccctccagattatcctttcaagcccccaaaggtctctttcaaaaccaaggttttccacccaaacatcaacagtaatggtagtatttgtcttgatatcctaaaggaacaatggagccctgctcttactgtatccnaggtgctgctttctatttgctctttgcttactgatcccaatccagatgatcctttagtgccagagattgctcacatgtacaagacggatagaccgaagtatgagagtactgccagatcatggacccagaaatacgcaatgggttgaacacatctgtttctactttcatgaatatcatcgaacctttattctatagtagtaaataaacttaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="122249" stop="118655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121949" g_stop="121924" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121923" i_stop="120757" i_length="1167">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120756" g_stop="120665" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="118" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120664" i_stop="120268" i_length="397">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120267" g_stop="120140" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="246" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120139" i_stop="119361" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119360" g_stop="119256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="351" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119255" i_stop="119166" i_length="90">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119165" g_stop="118955" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="562" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E688745" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121949" e_stop="121924"/>
          <exon e_start="120756" e_stop="120665"/>
          <exon e_start="120267" e_stop="120140"/>
          <exon e_start="119360" e_stop="119256"/>
          <exon e_start="119165" e_stop="118955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTCTTCTCTCGAAAGAAAAAGGTTCGTAACCCTTAAAGAATTTTTTAACCCTACCGATTTCTCTGTCTTTTTTTTTTTTTTGCAAAATTGATCATGTTTGTTTGTTATGTTTTTGTTTATCTTTTTGCTGTAATTTTTCTGGATTTATATGGTGGTTTGCCGATTTTTTGTTTTCATTGTGAAAGAAGTAGTGGATGTACTCTGTTTCTGTTTTAATGTAGGCGTGATGAGAAGAGAATTTATAAAGCTGATTCTGTTTAGTTTTGTATAGATACTAGTAGTACTAGTAAGTTGATTGTTTATTTTGAGGAACTGCTGTGATGAATCATTTTTTAATTAAAAAAAGGTTCATTTTTTAAGGTTTCACTTTCTTTAACATCAAAACAGGAAAAGGGGACTTTTTTGTTTGTTTGTGGAGTCCTGGAAAAAATTGGATTCTTGTTTTGGGTTGGTATGCGTTACTGCAGGGGCGGAGTTAGGTAGGGTTAAGGCGAACCCACCGTTTCGTTTATGTAGGAGTTTTTACGTATATATATATATATAGTGGATATTGAATTCCGTCACTTCTTTTGTGTATTTGTTTTTTCCTGTTTTTGTACTTAAGGTTGGTGAGATCCTAGGCGAATGTTTCTTGATCATTATCTGTGTGATAAAAGCTGGGATGTAATGGTTGTCCCTGTTGTTGGTGTTAATGGTTATATTAATTTATTTGGTTTCCTGTTCCAAGTTAAAATTCTGATCATTATCTCTTAGATAGAGACTAGGATGTGATGGTTTCTGCGGGTTATTAATGTTTTTGTATATTTTGAGGCCATTGATTATGGTAAAAAACCTTTCTTTAGGAAGGGGGAGAGTGTTTTACATTGTCTGGAACTTCATTGTCTTTTCTCTTGCCTGAGTTTCACCAATGTAGTGTAATAGTTCTTGCCTGCTCCTCTGCACTTACAGGAGCAGCACCGGAGAGGAAAATACATATTCTCTTTAGTAGTATATGTAGTTTCAACTCCTACGCATTGCTGCAGTTCGCTTCTCCTTAATGCAACGCTTTTACCTTGAAAAAAAGTGCATACCGTAACAACTTCTATGAAATTATTTTTGAAGTGTAATCATCTTTTACTAAAGAAAAAATTCTAATTCTTGATTATTTGGCCTTCCTTTGGCATTATTGGTTTGGATTTCTTTTTGCAGTGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAGGTATATATGAGTGTGACTTGTTCTTGCTTAATGTCTCTTTATAGCCATGCTCAATAGATATCCCCTCTCGTCTTCCCCATATCTGCAGCTTGGATTTGTGTTGGAAATATTTGAGACACATCAGATATGTGCTGGGAACAATCTGATGATTTCTTTCCCCTACCATCCGATGGGTAGTCATTACTTACTGTTCATTTGGTCCTCTTCTTCTTTGTTTCCCTTTCCCCCTTATGTTGGTTGAGGTTTGGGGTAGGATTGACTGAATAACTGGTGACAATTCTTTTGGTTCTGTTAATATTTTGTTAAGACATGTCTGCACTTGTGTTGGTATTTGTGAAAATTGTTTACTTTCAATTTGGATGCTGTTTTGGGCTGAAAATTGTTTTGCTTCTTGCAGGCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAGGTAGTTTTGAAGTCTTGCCAAGTTTTTTTTTTTTTTTGTGTGTGTTTTGTAAAATTTCTCTTGCTCCTATTTCTAACATTCCTTACCTTAGCAATTCTGTCTTGCCGTGGAGTACAACTATTTACTGCAAGAGTTTCCAGTAGATTAAACCTGAACTCCAATGTATTTGTTATACATATTTGTTATTTGATATGTTTTACATGAGCTGATGTCTCATCGGAGATAATCTATCTACCTCCACAAGGTAGGGCAATGCTGCGCACACATCACCCTCCCGAACTCCACAAGTTGGATCACACTTGATTTGGTGTTGTTGTTGTTGTATGTTAGGTCCGATAAAACTTAATGTTCCAATATTTGCTGTGATGGTAAAATATATTATTAAACCAAGTAACACAGAAATGGAGTTTTTCAAGCAACCTAGGGTTGTTCAAAAGACGCAAAATCCTGCATCTACCAGGATGGATTTGGCTCTAGACAACCATTGGCGTTCAATTCTTTTTCTTGTTGGATCTCAGTATGGATGTTTGCCATTCTTTTATTTGCCTTTGATGTGTTTTATGTAGTCCTTGCTTAAATGATTTATACTCGCGTTTCACTATATAGAAGAACCCATTCTCAGCTTCCTTGTGTATCATTGGAATAACCAAGGACAATTATGTGCTATTGTTTTTGCTTGTTACATGTAAATACCAGCAAATGCCATCTCCCTTGTATTTCTCGATTCTTAATTTGTTGCAAAACCCTGCTTTACTTTGTTTTGACTCTTAATACTGTAGGTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAGGTAAAGTATATCATGCTCTTCTTAGCTCAATTCTAAAGCATCTGCTTTATGTATATACATTTTGGTGACAATTATGCTGGGAGATTGCAGGTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGC</genome_strand>
        <mrna_strand>AAACTCTCTTCTCTCGAAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCNAG..........................................................................................GTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256822" ref_strand="+" ref_description="SGN-E256822 [cLEG-40-B1]">
      <seq>aactctcttctctcgaaagaaaaagtgataagtctcgcaaattcgttatngctggaaagatgattcanaatgaattgaaggacttgcagaaagacccccctgcttcctgcagtgcaggccctgtaggtcaggatatgttccattggcaagctaccataatgggtccatctgacagtccgttttctgggggtgttttccttgcatctatccatttccctccagattatcctttcaagcccccaaaggtctctttcaaaaccaaggttttccacccaaacatcaacagtaatggtagtatttgtcttgatatcctaaaggaacaatggagccctgctcttactgtatccaaggtgctgctttctatttgctctttgcttactgatcccaatccagatgatcctttagtgccagagattgctcacatgtacaagacggatagaccgaagtatgagagtactgccagatcatggacccagaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="122248" stop="118735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121948" g_stop="121924" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121923" i_stop="120757" i_length="1167">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120756" g_stop="120665" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="117" r_length="92" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120664" i_stop="120268" i_length="397">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120267" g_stop="120140" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="245" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120139" i_stop="119361" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119360" g_stop="119256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="350" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119255" i_stop="119166" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119165" g_stop="119035" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="481" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E256822" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121948" e_stop="121924"/>
          <exon e_start="120756" e_stop="120665"/>
          <exon e_start="120267" e_stop="120140"/>
          <exon e_start="119360" e_stop="119256"/>
          <exon e_start="119165" e_stop="119035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTCTTCTCTCGAAAGAAAAAGGTTCGTAACCCTTAAAGAATTTTTTAACCCTACCGATTTCTCTGTCTTTTTTTTTTTTTTGCAAAATTGATCATGTTTGTTTGTTATGTTTTTGTTTATCTTTTTGCTGTAATTTTTCTGGATTTATATGGTGGTTTGCCGATTTTTTGTTTTCATTGTGAAAGAAGTAGTGGATGTACTCTGTTTCTGTTTTAATGTAGGCGTGATGAGAAGAGAATTTATAAAGCTGATTCTGTTTAGTTTTGTATAGATACTAGTAGTACTAGTAAGTTGATTGTTTATTTTGAGGAACTGCTGTGATGAATCATTTTTTAATTAAAAAAAGGTTCATTTTTTAAGGTTTCACTTTCTTTAACATCAAAACAGGAAAAGGGGACTTTTTTGTTTGTTTGTGGAGTCCTGGAAAAAATTGGATTCTTGTTTTGGGTTGGTATGCGTTACTGCAGGGGCGGAGTTAGGTAGGGTTAAGGCGAACCCACCGTTTCGTTTATGTAGGAGTTTTTACGTATATATATATATATAGTGGATATTGAATTCCGTCACTTCTTTTGTGTATTTGTTTTTTCCTGTTTTTGTACTTAAGGTTGGTGAGATCCTAGGCGAATGTTTCTTGATCATTATCTGTGTGATAAAAGCTGGGATGTAATGGTTGTCCCTGTTGTTGGTGTTAATGGTTATATTAATTTATTTGGTTTCCTGTTCCAAGTTAAAATTCTGATCATTATCTCTTAGATAGAGACTAGGATGTGATGGTTTCTGCGGGTTATTAATGTTTTTGTATATTTTGAGGCCATTGATTATGGTAAAAAACCTTTCTTTAGGAAGGGGGAGAGTGTTTTACATTGTCTGGAACTTCATTGTCTTTTCTCTTGCCTGAGTTTCACCAATGTAGTGTAATAGTTCTTGCCTGCTCCTCTGCACTTACAGGAGCAGCACCGGAGAGGAAAATACATATTCTCTTTAGTAGTATATGTAGTTTCAACTCCTACGCATTGCTGCAGTTCGCTTCTCCTTAATGCAACGCTTTTACCTTGAAAAAAAGTGCATACCGTAACAACTTCTATGAAATTATTTTTGAAGTGTAATCATCTTTTACTAAAGAAAAAATTCTAATTCTTGATTATTTGGCCTTCCTTTGGCATTATTGGTTTGGATTTCTTTTTGCAGTGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAGGTATATATGAGTGTGACTTGTTCTTGCTTAATGTCTCTTTATAGCCATGCTCAATAGATATCCCCTCTCGTCTTCCCCATATCTGCAGCTTGGATTTGTGTTGGAAATATTTGAGACACATCAGATATGTGCTGGGAACAATCTGATGATTTCTTTCCCCTACCATCCGATGGGTAGTCATTACTTACTGTTCATTTGGTCCTCTTCTTCTTTGTTTCCCTTTCCCCCTTATGTTGGTTGAGGTTTGGGGTAGGATTGACTGAATAACTGGTGACAATTCTTTTGGTTCTGTTAATATTTTGTTAAGACATGTCTGCACTTGTGTTGGTATTTGTGAAAATTGTTTACTTTCAATTTGGATGCTGTTTTGGGCTGAAAATTGTTTTGCTTCTTGCAGGCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAGGTAGTTTTGAAGTCTTGCCAAGTTTTTTTTTTTTTTTGTGTGTGTTTTGTAAAATTTCTCTTGCTCCTATTTCTAACATTCCTTACCTTAGCAATTCTGTCTTGCCGTGGAGTACAACTATTTACTGCAAGAGTTTCCAGTAGATTAAACCTGAACTCCAATGTATTTGTTATACATATTTGTTATTTGATATGTTTTACATGAGCTGATGTCTCATCGGAGATAATCTATCTACCTCCACAAGGTAGGGCAATGCTGCGCACACATCACCCTCCCGAACTCCACAAGTTGGATCACACTTGATTTGGTGTTGTTGTTGTTGTATGTTAGGTCCGATAAAACTTAATGTTCCAATATTTGCTGTGATGGTAAAATATATTATTAAACCAAGTAACACAGAAATGGAGTTTTTCAAGCAACCTAGGGTTGTTCAAAAGACGCAAAATCCTGCATCTACCAGGATGGATTTGGCTCTAGACAACCATTGGCGTTCAATTCTTTTTCTTGTTGGATCTCAGTATGGATGTTTGCCATTCTTTTATTTGCCTTTGATGTGTTTTATGTAGTCCTTGCTTAAATGATTTATACTCGCGTTTCACTATATAGAAGAACCCATTCTCAGCTTCCTTGTGTATCATTGGAATAACCAAGGACAATTATGTGCTATTGTTTTTGCTTGTTACATGTAAATACCAGCAAATGCCATCTCCCTTGTATTTCTCGATTCTTAATTTGTTGCAAAACCCTGCTTTACTTTGTTTTGACTCTTAATACTGTAGGTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAGGTAAAGTATATCATGCTCTTCTTAGCTCAATTCTAAAGCATCTGCTTTATGTATATACATTTTGGTGACAATTATGCTGGGAGATTGCAGGTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATA</genome_strand>
        <mrna_strand>AACTCTCTTCTCTCGAAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGTCTCGCAAATTCGTTATNGCTGGAAAGATGATTCANAATGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAG..........................................................................................GTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550964" ref_strand="+" ref_description="SGN-E550964 [TUS-54-J15]">
      <seq>tttccttgcatctatccgtttccctccagattatcctttcaagcccccgaaggtctctttcttaaccaaggttttccacccaaacatcaacagtaatggtagtatttgtcttgatatcctaaaggaacaatggagccctgctcttactgtatccaaggtgctgctttctatttgctctttgcttactgatcccaatccagatgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="120491" stop="118815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120191" g_stop="120140" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120139" i_stop="119361" i_length="779">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119360" g_stop="119256" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="157" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119255" i_stop="119166" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119165" g_stop="119115" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="208" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E550964" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120191" e_stop="120140"/>
          <exon e_start="119360" e_stop="119256"/>
          <exon e_start="119165" e_stop="119115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAGGTAGTTTTGAAGTCTTGCCAAGTTTTTTTTTTTTTTTGTGTGTGTTTTGTAAAATTTCTCTTGCTCCTATTTCTAACATTCCTTACCTTAGCAATTCTGTCTTGCCGTGGAGTACAACTATTTACTGCAAGAGTTTCCAGTAGATTAAACCTGAACTCCAATGTATTTGTTATACATATTTGTTATTTGATATGTTTTACATGAGCTGATGTCTCATCGGAGATAATCTATCTACCTCCACAAGGTAGGGCAATGCTGCGCACACATCACCCTCCCGAACTCCACAAGTTGGATCACACTTGATTTGGTGTTGTTGTTGTTGTATGTTAGGTCCGATAAAACTTAATGTTCCAATATTTGCTGTGATGGTAAAATATATTATTAAACCAAGTAACACAGAAATGGAGTTTTTCAAGCAACCTAGGGTTGTTCAAAAGACGCAAAATCCTGCATCTACCAGGATGGATTTGGCTCTAGACAACCATTGGCGTTCAATTCTTTTTCTTGTTGGATCTCAGTATGGATGTTTGCCATTCTTTTATTTGCCTTTGATGTGTTTTATGTAGTCCTTGCTTAAATGATTTATACTCGCGTTTCACTATATAGAAGAACCCATTCTCAGCTTCCTTGTGTATCATTGGAATAACCAAGGACAATTATGTGCTATTGTTTTTGCTTGTTACATGTAAATACCAGCAAATGCCATCTCCCTTGTATTTCTCGATTCTTAATTTGTTGCAAAACCCTGCTTTACTTTGTTTTGACTCTTAATACTGTAGGTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAGGTAAAGTATATCATGCTCTTCTTAGCTCAATTCTAAAGCATCTGCTTTATGTATATACATTTTGGTGACAATTATGCTGGGAGATTGCAGGTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCT</genome_strand>
        <mrna_strand>TTTCCTTGCATCTATCCGTTTCCCTCCAGATTATCCTTTCAAGCCCCCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTCTTAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAG..........................................................................................GTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256792" ref_strand="+" ref_description="SGN-E256792 [cLEG-40-C22]">
      <seq>aactctcttctctcgaaagaaaaagtgataagtctcgcaaattcgttatggcttcaaagaggattcagaaggaattgaaggacttgcaaaaagacccccctgcttcctgcagtgcaggccctgtaggtcaggatatgttccattggcaagctaccataatgggtccatctgacagtccgttttctgggggtgttttccttgcatctatccatttccctccagattatcctttcaagcccccaaaggtctctttcaaaaccaaggttttccacccaaacatcaacagtaatggtagtatttgtcttgatatcctaaaggaacaatggagccctgctcttactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="122248" stop="118963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121948" g_stop="121924" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121923" i_stop="120757" i_length="1167">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120756" g_stop="120665" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="117" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120664" i_stop="120268" i_length="397">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120267" g_stop="120140" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="245" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120139" i_stop="119361" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119360" g_stop="119263" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="343" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E256792" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121948" e_stop="121924"/>
          <exon e_start="120756" e_stop="120665"/>
          <exon e_start="120267" e_stop="120140"/>
          <exon e_start="119360" e_stop="119263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTCTTCTCTCGAAAGAAAAAGGTTCGTAACCCTTAAAGAATTTTTTAACCCTACCGATTTCTCTGTCTTTTTTTTTTTTTTGCAAAATTGATCATGTTTGTTTGTTATGTTTTTGTTTATCTTTTTGCTGTAATTTTTCTGGATTTATATGGTGGTTTGCCGATTTTTTGTTTTCATTGTGAAAGAAGTAGTGGATGTACTCTGTTTCTGTTTTAATGTAGGCGTGATGAGAAGAGAATTTATAAAGCTGATTCTGTTTAGTTTTGTATAGATACTAGTAGTACTAGTAAGTTGATTGTTTATTTTGAGGAACTGCTGTGATGAATCATTTTTTAATTAAAAAAAGGTTCATTTTTTAAGGTTTCACTTTCTTTAACATCAAAACAGGAAAAGGGGACTTTTTTGTTTGTTTGTGGAGTCCTGGAAAAAATTGGATTCTTGTTTTGGGTTGGTATGCGTTACTGCAGGGGCGGAGTTAGGTAGGGTTAAGGCGAACCCACCGTTTCGTTTATGTAGGAGTTTTTACGTATATATATATATATAGTGGATATTGAATTCCGTCACTTCTTTTGTGTATTTGTTTTTTCCTGTTTTTGTACTTAAGGTTGGTGAGATCCTAGGCGAATGTTTCTTGATCATTATCTGTGTGATAAAAGCTGGGATGTAATGGTTGTCCCTGTTGTTGGTGTTAATGGTTATATTAATTTATTTGGTTTCCTGTTCCAAGTTAAAATTCTGATCATTATCTCTTAGATAGAGACTAGGATGTGATGGTTTCTGCGGGTTATTAATGTTTTTGTATATTTTGAGGCCATTGATTATGGTAAAAAACCTTTCTTTAGGAAGGGGGAGAGTGTTTTACATTGTCTGGAACTTCATTGTCTTTTCTCTTGCCTGAGTTTCACCAATGTAGTGTAATAGTTCTTGCCTGCTCCTCTGCACTTACAGGAGCAGCACCGGAGAGGAAAATACATATTCTCTTTAGTAGTATATGTAGTTTCAACTCCTACGCATTGCTGCAGTTCGCTTCTCCTTAATGCAACGCTTTTACCTTGAAAAAAAGTGCATACCGTAACAACTTCTATGAAATTATTTTTGAAGTGTAATCATCTTTTACTAAAGAAAAAATTCTAATTCTTGATTATTTGGCCTTCCTTTGGCATTATTGGTTTGGATTTCTTTTTGCAGTGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAGGTATATATGAGTGTGACTTGTTCTTGCTTAATGTCTCTTTATAGCCATGCTCAATAGATATCCCCTCTCGTCTTCCCCATATCTGCAGCTTGGATTTGTGTTGGAAATATTTGAGACACATCAGATATGTGCTGGGAACAATCTGATGATTTCTTTCCCCTACCATCCGATGGGTAGTCATTACTTACTGTTCATTTGGTCCTCTTCTTCTTTGTTTCCCTTTCCCCCTTATGTTGGTTGAGGTTTGGGGTAGGATTGACTGAATAACTGGTGACAATTCTTTTGGTTCTGTTAATATTTTGTTAAGACATGTCTGCACTTGTGTTGGTATTTGTGAAAATTGTTTACTTTCAATTTGGATGCTGTTTTGGGCTGAAAATTGTTTTGCTTCTTGCAGGCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAGGTAGTTTTGAAGTCTTGCCAAGTTTTTTTTTTTTTTTGTGTGTGTTTTGTAAAATTTCTCTTGCTCCTATTTCTAACATTCCTTACCTTAGCAATTCTGTCTTGCCGTGGAGTACAACTATTTACTGCAAGAGTTTCCAGTAGATTAAACCTGAACTCCAATGTATTTGTTATACATATTTGTTATTTGATATGTTTTACATGAGCTGATGTCTCATCGGAGATAATCTATCTACCTCCACAAGGTAGGGCAATGCTGCGCACACATCACCCTCCCGAACTCCACAAGTTGGATCACACTTGATTTGGTGTTGTTGTTGTTGTATGTTAGGTCCGATAAAACTTAATGTTCCAATATTTGCTGTGATGGTAAAATATATTATTAAACCAAGTAACACAGAAATGGAGTTTTTCAAGCAACCTAGGGTTGTTCAAAAGACGCAAAATCCTGCATCTACCAGGATGGATTTGGCTCTAGACAACCATTGGCGTTCAATTCTTTTTCTTGTTGGATCTCAGTATGGATGTTTGCCATTCTTTTATTTGCCTTTGATGTGTTTTATGTAGTCCTTGCTTAAATGATTTATACTCGCGTTTCACTATATAGAAGAACCCATTCTCAGCTTCCTTGTGTATCATTGGAATAACCAAGGACAATTATGTGCTATTGTTTTTGCTTGTTACATGTAAATACCAGCAAATGCCATCTCCCTTGTATTTCTCGATTCTTAATTTGTTGCAAAACCCTGCTTTACTTTGTTTTGACTCTTAATACTGTAGGTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGT</genome_strand>
        <mrna_strand>AACTCTCTTCTCTCGAAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAAAAAGACCCCCCTGCTTCCTGCAGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544818" ref_strand="+" ref_description="SGN-E544818 [TUS-67-F14](-)">
      <seq>gaactgccagtggagatcattgatgcccggctattgcaagcacgtgagatattggtagatctgctcaagcctatggatgagtcacaggatttctacaaaaaacagtagttgcgtgaacttgcaatgctgaatggtactctgtgtgaagaaggttctcaaatgtctgtttctgtttcccccttccacaacagtcttagtcttgggatgaagagggctaaaaccagagtgtgatctttgtgtagtgggatttggagcttgtgcattgatacacaccactaaccaaccagcaggtcctatatgcaaccgatgttgctataacgtcttatgcctcgcactgccatcggggcactggtgctgttctgtgccagttctaacttgtctctatattgatatgaagtgtgtttatgttccggtcagggaagatttagtaacagtaaagccatagttgtggaccgcttagaggtttgcttgatgtcgtcagagcggtgtcttaccaacgtcattgtattattccagtaatttctagtttgtgatttgaaggtgtgggaatgactgtaatgcgagcgatggcgtgtctgtactgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="123726" stop="122413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123426" g_stop="123352" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123351" i_stop="123241" i_length="111">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123240" g_stop="122715" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="602" r_length="527" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E544818" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123426" e_stop="123352"/>
          <exon e_start="123240" e_stop="122715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGCTCAAGCCTATGGTAAATTCAACATATAGATTGCAAGTTGTCATTGTTTGTCTACTAACTATCACACATTTTCCCAAGTTGAGAGATATTCATTATTATTTCTTCATTTTCCTCCAAATGCAGGATGAGTCACAGGATTTCTACAAAAAACAGCAGTTGCGTGAACTTGCAATGCTGAATGGTACTCTTCGTGAAGAAGGTTCTCAAATGTCTGGTTCTGTTTCCCCCTTCCACAACAGTCTTAGTCTTGGGATGAAGAGGGCTAAAACCAGAGTGTGATCTTTGTGTAGTGGGATTTGGAGCTTGTGCATTGATACACACCACTAACCAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCACTGCCATCGGGGCACTGGTGCTGTTCTGTGCCAGTTCTAACTTGTCTCTATAATGATATGAAGTGTGTTTATGTTCCGGTCAGGGAAGATTTAGTAACAGTAAAGCCATAGTTGTGGACCGCTTAGAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTACCAACGTCATTGTATTATTCCATTAATTTCTAGTTTGTGATTTGAAGGTGTGGGAATGACTGTAATGCGAGCGA-GGCGTGTCTGTACTGATAAAAAAAGAAAGAAAAA</genome_strand>
        <mrna_strand>GAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGTAGATCTGCTCAAGCCTATG...............................................................................................................GATGAGTCACAGGATTTCTACAAAAAACAGTAGTTGCGTGAACTTGCAATGCTGAATGGTACTCTGTGTGAAGAAGGTTCTCAAATGTCTGTTTCTGTTTCCCCCTTCCACAACAGTCTTAGTCTTGGGATGAAGAGGGCTAAAACCAGAGTGTGATCTTTGTGTAGTGGGATTTGGAGCTTGTGCATTGATACACACCACTAACCAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCACTGCCATCGGGGCACTGGTGCTGTTCTGTGCCAGTTCTAACTTGTCTCTATATTGATATGAAGTGTGTTTATGTTCCGGTCAGGGAAGATTTAGTAACAGTAAAGCCATAGTTGTGGACCGCTTAGAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTACCAACGTCATTGTATTATTCCAGTAATTTCTAGTTTGTGATTTGAAGGTGTGGGAATGACTGTAATGCGAGCGATGGCGTGTCTGTACTGATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225221" ref_strand="+" ref_description="SGN-E225221 [cLEL-17-P18](-)">
      <seq>tgtgatctttgtgtagtgggatttggagcttgtgcattgatacacacccactaacaaccagcaggtcctatatgcaaccgatgttgctataacgtcttatgcctcgcactgccatcggggcactggtgctgttctgtgccagttctaacttgtctctataatgatatgaagtgtgtttatgttccggtcagggaagatttagtaacagtaaagccatagttgtggaccgcttagaggtttgcttgatgtcgtcagagcggtgtcttaccaacgtcattgtattattccattaatttctagtttgtgatttgaaggtgtgggaatgactgtaatgcgagcgaggcgtgtctgtactgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="123389" stop="122413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123089" g_stop="122715" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E225221" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123089" e_stop="122715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGATCTTTGTGTAGTGGGATTTGGAGCTTGTGCATTGATACACA-CCACTAACCAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCACTGCCATCGGGGCACTGGTGCTGTTCTGTGCCAGTTCTAACTTGTCTCTATAATGATATGAAGTGTGTTTATGTTCCGGTCAGGGAAGATTTAGTAACAGTAAAGCCATAGTTGTGGACCGCTTAGAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTACCAACGTCATTGTATTATTCCATTAATTTCTAGTTTGTGATTTGAAGGTGTGGGAATGACTGTAATGCGAGCGAGGCGTGTCTGTACTGATAAAAAAAGAAAGAAAAA</genome_strand>
        <mrna_strand>TGTGATCTTTGTGTAGTGGGATTTGGAGCTTGTGCATTGATACACACCCACTAA-CAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCACTGCCATCGGGGCACTGGTGCTGTTCTGTGCCAGTTCTAACTTGTCTCTATAATGATATGAAGTGTGTTTATGTTCCGGTCAGGGAAGATTTAGTAACAGTAAAGCCATAGTTGTGGACCGCTTAGAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTACCAACGTCATTGTATTATTCCATTAATTTCTAGTTTGTGATTTGAAGGTGTGGGAATGACTGTAATGCGAGCGAGGCGTGTCTGTACTGATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225876" ref_strand="+" ref_description="SGN-E225876 [cLEL-17-N2](-)">
      <seq>ggcactggtgctgttctgtgccagttctaccttgtctctataatgatatgaagtgtgtttatgttccggtcagggaagatttagtagcagtgaagccatagttgtggaccgcttagaggtttgcttgatgtcgtcagagcggtgtcttaccagcgtcattgtattattccattgatttctagtttgtgatttgaaggtgtgggaatgactgtaatgcgaccgaggcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="123271" stop="122443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122971" g_stop="122743" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E225876" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122971" e_stop="122743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACTGGTGCTGTTCTGTGCCAGTTCTAACTTGTCTCTATAATGATATGAAGTGTGTTTATGTTCCGGTCAGGGAAGATTTAGTAACAGTAAAGCCATAGTTGTGGACCGCTTAGAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTACCAACGTCATTGTATTATTCCATTAATTTCTAGTTTGTGATTTGAAGGTGTGGGAATGACTGTAATGCGAGCGAGGCGTG</genome_strand>
        <mrna_strand>GGCACTGGTGCTGTTCTGTGCCAGTTCTACCTTGTCTCTATAATGATATGAAGTGTGTTTATGTTCCGGTCAGGGAAGATTTAGTAGCAGTGAAGCCATAGTTGTGGACCGCTTAGAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTACCAGCGTCATTGTATTATTCCATTGATTTCTAGTTTGTGATTTGAAGGTGTGGGAATGACTGTAATGCGACCGAGGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728398" ref_strand="+" ref_description="SGN-E728398 [LA17CG08]">
      <seq>gcgatgcgaacactcagaattgatataccggtggatcaatatcctagtttacctttgcagtacaatttcgtgggccgacttctgggccctagagggaactctctaaagcgggtggaagctactactgaatgccgggttctgataagaggacgcggaagcatcaaagatccagtaaaggaagaaatgatgagaggcaaaccgggatatgagcacctgaatgagcctcttcatgttattgtggaagctgaactgccagtggagatcattgatgcccggctattgcaagcacgtgagatattggaagatctgctcaagcctatggatgagtcacaggatttctacaaaaaacagcagttgcgtgaacttgcaatgctgaatggtactcttcgtgaagaaggttctcaaatgtctggttctgtttcccccttccacaacagtcttagtcttgggatgaagagggctaaaaccagagtgtgatctttgtgtagtgggatttggagcttgtgcattgatacacaccactaaccaaccagcaggtcctatatgcaaccgatgttgctataacgtcttatgcctcgcactgccatcggggcactggtgctgttctgtgccagttctaacttgtctctataatgatatgaagtgtgtttatgttccggtcanggaagatttagtaacagtaaagccatagttgtggaccgcttanaggtttgcttgatgtcgtcagagcggtgtctttacaacgtcattgtattattccattaatttctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="124803" stop="122490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124503" g_stop="124456" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124455" i_stop="124384" i_length="72">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124383" g_stop="124255" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="177" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124254" i_stop="123496" i_length="759">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123495" g_stop="123352" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="321" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123351" i_stop="123241" i_length="111">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123240" g_stop="122790" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="772" r_length="451" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E728398" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124503" e_stop="124456"/>
          <exon e_start="124383" e_stop="124255"/>
          <exon e_start="123495" e_stop="123352"/>
          <exon e_start="123240" e_stop="122790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGTGTATGTACTATTATCTATTTTCTCATTCTGCTTATCATGACTTCTCTACATCATGTTGAATGTGTGTTTTAGTTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAGGTAATATTATGAACTGATGGAATATTTGAGTGGCCATGGAATAATCTCTATTCCAGTCCATTTTGAAGTTCTTATTAAATTTAGATTAGTTACCCTTTTCTGGCTTGTTTAGTTGATTCATCTGTGATATTAAGGTGGGCCCTTACCTCCATAGGTTGGTACGAAGTTGATGTATCAAAAGTTCTTTTGGTGGAGGTCAAGTTTTGATTCCGTCATTAGAATTTTCAGCAACTCTTGTTAGTGGCATTGGATAGTCTGATGTCCCAGTCAAATTTTACATCCGGATAGGCGTGAGAGATTCTAGAGTTAAGGAGGGGCTTGCGGATAATTTTATAACACCTTTAGATATTTCAAGAAAGCTTTAGAATATCCTAGATTATCTAGATTTTTCTAGAGAGGGAACAAAGTGTAAATATTTTAGGGACTTGTAAAGTAATTTTAAATTGCACTTAGCCCCTTAGTAGTATAAACAGAGGTGTCATTCATTTGCAATGCATCCCTCCTCAAGTGTAAAGCAGTCTTCCAAGCTAATACAAAGCCATCCTCAAAACTTCCCAAATCTTTCGAAGTCTTTCTTTGCATCGCTAAAGGCTTACTTGAGCTTACGAGATCTTGAAACAATAGTAAGTTGTCAAGGGTTGCACGGAGGTGTAGTGAAAACTCCAAGTCCGTGACGCCGAGGTGGTAATTGTACAATTTTTCCATCCGGAATCATCTTTCTTAACATTTAACATAATATTTTACTTCGTCATTTTGAAGGAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGCTCAAGCCTATGGTAAATTCAACATATAGATTGCAAGTTGTCATTGTTTGTCTACTAACTATCACACATTTTCCCAAGTTGAGAGATATTCATTATTATTTCTTCATTTTCCTCCAAATGCAGGATGAGTCACAGGATTTCTACAAAAAACAGCAGTTGCGTGAACTTGCAATGCTGAATGGTACTCTTCGTGAAGAAGGTTCTCAAATGTCTGGTTCTGTTTCCCCCTTCCACAACAGTCTTAGTCTTGGGATGAAGAGGGCTAAAACCAGAGTGTGATCTTTGTGTAGTGGGATTTGGAGCTTGTGCATTGATACACACCACTAACCAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCACTGCCATCGGGGCACTGGTGCTGTTCTGTGCCAGTTCTAACTTGTCTCTATAATGATATGAAGTGTGTTTATGTTCCGGTCAGGGAAGATTTAGTAACAGTAAAGCCATAGTTGTGGACCGCTTAGAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTACCAACGTCATTGTATTATTCCATTAATTTCTAG</genome_strand>
        <mrna_strand>GCGATGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGT........................................................................TTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGCTCAAGCCTATG...............................................................................................................GATGAGTCACAGGATTTCTACAAAAAACAGCAGTTGCGTGAACTTGCAATGCTGAATGGTACTCTTCGTGAAGAAGGTTCTCAAATGTCTGGTTCTGTTTCCCCCTTCCACAACAGTCTTAGTCTTGGGATGAAGAGGGCTAAAACCAGAGTGTGATCTTTGTGTAGTGGGATTTGGAGCTTGTGCATTGATACACACCACTAACCAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCACTGCCATCGGGGCACTGGTGCTGTTCTGTGCCAGTTCTAACTTGTCTCTATAATGATATGAAGTGTGTTTATGTTCCGGTCANGGAAGATTTAGTAACAGTAAAGCCATAGTTGTGGACCGCTTANAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTTACAACGTCATTGTATTATTCCATTAATTTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359448" ref_strand="+" ref_description="SGN-E359448 [cLHT-31-M8]">
      <seq>cactccccgtcgactcaaaattggcttaatactcaaagtaactcatcaggcctcatagtgaagcgaacactcagaattgatataccggtggatcaatatcctagtttacctttgcagtacaatttcgtgggccgacttctgggccctagagggaactctctaaagcgagtggaagctactactgaatgccgggttctgataagaggacgcggaagcatcaaagatccagtaaaggaagaaatgatgagaggcaaaccgggatatgagcacctgaatgagcctcttcatgttattgtggaagctgagctgccagtggagatcattgatgcccggctattgcaagcacgtgagatattggaagatctgctcaagcctatggatgagtcacaggatttctacaaaaaacagcagttgcgtgaacttgcaatgctcaatggtactcttcgtgaagaaggttctcaaatgtctggttctgtttcccccttccacaacagtcttagtcttgggatgaagagggctaaaaccagagtgtgatctttgtctagtgggatttggagcttgtgcattgatacacaccactaaccaaccagcaggtcctatatgcaaccgatgttgctataacgtcttatgcctcgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="124860" stop="122681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124560" g_stop="124456" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124455" i_stop="124384" i_length="72">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124383" g_stop="124255" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="234" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124254" i_stop="123496" i_length="759">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123495" g_stop="123352" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="378" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123351" i_stop="123241" i_length="111">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123240" g_stop="122981" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="638" r_length="260" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E359448" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124560" e_stop="124456"/>
          <exon e_start="124383" e_stop="124255"/>
          <exon e_start="123495" e_stop="123352"/>
          <exon e_start="123240" e_stop="122981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGTGTATGTACTATTATCTATTTTCTCATTCTGCTTATCATGACTTCTCTACATCATGTTGAATGTGTGTTTTAGTTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAGGTAATATTATGAACTGATGGAATATTTGAGTGGCCATGGAATAATCTCTATTCCAGTCCATTTTGAAGTTCTTATTAAATTTAGATTAGTTACCCTTTTCTGGCTTGTTTAGTTGATTCATCTGTGATATTAAGGTGGGCCCTTACCTCCATAGGTTGGTACGAAGTTGATGTATCAAAAGTTCTTTTGGTGGAGGTCAAGTTTTGATTCCGTCATTAGAATTTTCAGCAACTCTTGTTAGTGGCATTGGATAGTCTGATGTCCCAGTCAAATTTTACATCCGGATAGGCGTGAGAGATTCTAGAGTTAAGGAGGGGCTTGCGGATAATTTTATAACACCTTTAGATATTTCAAGAAAGCTTTAGAATATCCTAGATTATCTAGATTTTTCTAGAGAGGGAACAAAGTGTAAATATTTTAGGGACTTGTAAAGTAATTTTAAATTGCACTTAGCCCCTTAGTAGTATAAACAGAGGTGTCATTCATTTGCAATGCATCCCTCCTCAAGTGTAAAGCAGTCTTCCAAGCTAATACAAAGCCATCCTCAAAACTTCCCAAATCTTTCGAAGTCTTTCTTTGCATCGCTAAAGGCTTACTTGAGCTTACGAGATCTTGAAACAATAGTAAGTTGTCAAGGGTTGCACGGAGGTGTAGTGAAAACTCCAAGTCCGTGACGCCGAGGTGGTAATTGTACAATTTTTCCATCCGGAATCATCTTTCTTAACATTTAACATAATATTTTACTTCGTCATTTTGAAGGAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGCTCAAGCCTATGGTAAATTCAACATATAGATTGCAAGTTGTCATTGTTTGTCTACTAACTATCACACATTTTCCCAAGTTGAGAGATATTCATTATTATTTCTTCATTTTCCTCCAAATGCAGGATGAGTCACAGGATTTCTACAAAAAACAGCAGTTGCGTGAACTTGCAATGCTGAATGGTACTCTTCGTGAAGAAGGTTCTCAAATGTCTGGTTCTGTTTCCCCCTTCCACAACAGTCTTAGTCTTGGGATGAAGAGGGCTAAAACCAGAGTGTGATCTTTGTGTAGTGGGATTTGGAGCTTGTGCATTGATACACACCACTAACCAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCAC</genome_strand>
        <mrna_strand>CACTCCCCGTCGACTCAAAATTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGT........................................................................TTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGAGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAGCTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGCTCAAGCCTATG...............................................................................................................GATGAGTCACAGGATTTCTACAAAAAACAGCAGTTGCGTGAACTTGCAATGCTCAATGGTACTCTTCGTGAAGAAGGTTCTCAAATGTCTGGTTCTGTTTCCCCCTTCCACAACAGTCTTAGTCTTGGGATGAAGAGGGCTAAAACCAGAGTGTGATCTTTGTCTAGTGGGATTTGGAGCTTGTGCATTGATACACACCACTAACCAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720331" ref_strand="+" ref_description="SGN-E720331 [FC10CA08]">
      <seq>gggcgattggcggccaatcggccgaattgagaaacagagggactcctttttggaaagtgaaaagtaggtgaatctggcagtcatcggattctgtcgccgccggtgaagatgtcttccggaagatacatggcctactcaccatctccgtctgctcctcagtctcctcatatcgccggacttcgctctgcttcctctgccatcgccgagcaagagaagtatctctcaaagttacttgcagaacgccacaaactcggcccatttgtgcccgtccttcctcattgctatcgattgctgaatcaggaacttttgcgtgtaactacactgttggggaatgcatcagtgttagatcaaaatgggcttgaacatgctagccccctggcttcaggaggaatgttttcaaatggaggagctaatgtggacagatgggcatcaccatttcaatcagaaatatcaggtttaatgcactccccgtcgactcagaactggcttaatactcaaagtaactcatcaggcctcatagtgaagcgaacactcagaattgatataccggtggatcaatatcctagtttacctttgcagtacaatttcgtgggccgacttctgggccctagagggaactctctaaagcgggtggaagctactactgaatgccgggttctgataagaggacgcggaagcatcaaagatccagtaaaggaagaaatgatgagaggcaaaccgggatatgagcacctgaatgagcctcttcatgttattgtggaagctgaactgccagtggagatcattgatgcccggctattgcaagcacgtgagatattggaagatctgctcaagcctatggatgagtcacaggatttctacaaaaaacagcagttgcgtgaacttgcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="129455" stop="122889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129143" g_stop="128960" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="215" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128959" i_stop="127564" i_length="1396">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127563" g_stop="127478" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="301" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127477" i_stop="125563" i_length="1915">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125562" g_stop="125417" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="447" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125416" i_stop="124576" i_length="841">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124575" g_stop="124456" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="567" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124455" i_stop="124384" i_length="72">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124383" g_stop="124255" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="696" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124254" i_stop="123496" i_length="759">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123495" g_stop="123352" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="840" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123351" i_stop="123241" i_length="111">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123240" g_stop="123189" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="892" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E720331" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129143" e_stop="128960"/>
          <exon e_start="127563" e_stop="127478"/>
          <exon e_start="125562" e_stop="125417"/>
          <exon e_start="124575" e_stop="124456"/>
          <exon e_start="124383" e_stop="124255"/>
          <exon e_start="123495" e_stop="123352"/>
          <exon e_start="123240" e_stop="123189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGGGACTCCTTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAAGTGCGTTTTTCCTTTTTCTCTAACAACTTTGATTTTTTTGTTTGAAGTCTTCGTCTTTGTTGATTCAGTGGATCGTGCTGAAATTGGCTAAGCATATGTCCGATCTTCAGCTTTTTTGTTCCTTAATTTGTTGCTTTAATTTTACTATGTGGTTGTGATTTGTGACTTGATTTTCATTTTTTGGTTCAACGATTTATAAGTTGATTTATCTGAAAAGATCTGGTTTAGCTTCTTACTTAGTTAAAAGCATCAGTTTAAGGTTCAATATACTTTAACGCAATTTCAAACAATCTGGATTGGTTCTATGAATTCCTTGGATACTTTGATCAGGTTTGTTCCTCCAAAAAGTTGGTTTCTTTGATCTTATCAGAAGTTGCTTGTTACTGTTTCTTCTTCTTCGGTTCATTTTGTCAATTCTAATACTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTATTTACTTCTATCAGATGTTGATTGTTGCTGTTTCTTTTTCCTTCGGATCATTTTTTCAATTCAAATACTTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTCTTTGCTTCTATCGAATGTTGATTTTTGCTGTTTCTTCTTCCTTTGGATCATTTTTTTAATTCAAATACTTTTTTGGGTTGGTTGCTCTCGAAAAGTTTGTTTCTTTGCTTCTATCAGATGTTGATTGTTGCTGTTTCTTCTTCATTCGGTTCATTTTTTCAATTCAAATACTTTTTTGGGTTGGTTGCGTCGAGAAGTTTGTATCTTTGCTTCTATCAGATGTTGATTGTTATTATTTTTTCCCCTTCATTCAGAGAATTTGGTCCAATCTTCTCATAAGAAATTAAGAGAGGTGCAATTGTAAAGAAAAGATTCACTTTCTTGCTTGAATTACTCGGGCATTTATAACCCAAGAAGACTCTAGCACTTCGGCCTTGCAATAGCATTTTTTGTATGATCCCTTTTTCCCTACTTTGCTGATTGATAGAGTGGATCCGGGATTTTGAGTTGGCGGGTGTGGAGTACCACTGCACCCACTACTACTTTGTGGTGGTCGATGCAACTTTTGGTAAATGATTCAATTTGCTGCAGCCACTGACCAAATACTGCAACCCTGTCCTTCCGATTTGCATTTTGTTCCTATCTTAAGTGAACTTGTCTGCTTATTTTTGCTTATTCTAGTGCATCTTATGTGATTGACCAAATAGGAGATCTCGCTGCTCTATGTGCATTGTTTTTTCTCGATCTTCAGAAGATTGACAATAGCACAAACTAAATTAATTGGACTATCAAACTTGGAACAACCATCTTTTAAAGAGATACTGATGGTTTTCTTCTTATGTGTACCTATACCATAATTTGTTGCGAGTATTTAATTTGTCAATGTGTGTTAACAGGTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGGGTGAGTAGGAAGTTGAATTTTGATTAGTTCAGCCACTTGTGCTTCTGATATCAAAAAGTTTGTTTTATTGCTCAACCTGAGAGAAATCAAAGATTAGAGAATGAGGTGAAAAATATTTTAAGTTGATGAGTACATTCTTTTCATCTGAACAAAGATGATAAATCCATTGTATACGTCTGTTTTTGCTAATTGGGTGGAAGTTTAGGTCAAGTTTGGATCTTCTATGTTAAGTCAGTCAGCACTTTTTTCTGGACGACTCCCAACACTTTTTGTATATTCCATGATTGTCTTTTTGTTATTCATGTTTAACTAGATATTTGTCCCATAAAACGGGTATTAGTATCTCTAATTTCCTCCTCCTATGCAGTTTCTAAATAAAAATAAACAATTCCTTCTTCTATGGTCAGCTGTGGTCCGCTTACCGAGTGTATAGACCTACATGTCGTAATAGGTACCAAGGGAATTACATTTTACTTAACTGGGAAGCTTGTCACAAATTTGTTTATAAATAATGTTGTAACCACCCCCTGGCAAGAAAGAGAAGAGGTATAGAGAGTCATGGTATTGAATCCATGTTTATTTCCTATATGTTGGAAATAAACACTCCATTGTCCCATTCCAGTTCAAAGATAAAAAAGAACTTCACTATCCTTTTGTTACACCCTCCCACCCCCACCCCCCAAAGTATCCTATAGGTTTTTTCTTCACATTTATAATATGCTTCACTGACAATTTAAACTGTGATACCACACATATTATTTGTGAGCCTCTAAGTTTTAGATGGAAAGTGTTATTAAAATCATCTTTTGGCCAGATTGTGGGAAATTTGCTTATAGTTTTCAATGCAAATCCCAGCTTATTTCACCATCAGCCTGTCATATATTCTTGGCTGTACCGGGAAGTTTTCAAGTACTATTTAGCAGTGTAGCCTGTAACGGATCTGGAATAGAAAGAAACACGACACTAGTAGTATACAATATTAAGATGAGGACCATGAAATTGATCCTCGAAGTATAAGAAGCATGATGTGCATTGTGTGAAGCCTGTTTAGTATGAAGGGGAAGGTTGAATCGTTGTGTGATTAGTAATAACGCTCAAGTTTGAGCGGTGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGTTTTAACCATTCATCCACAAATTGGTCATCTTAGGAGTCTCTTTTGTCCATAACATTTAACTGATTGCTTTAACAATTCATTTTTTTTCTATAAATCCGTGAGATAACTAACCAATGAAGGATCGTGTTGTTGTCCATATTGTGGTGGCTGCTAACTGATTTATTAACCACTGCTAACTGGTACGTCTTATTCTTGGAAATTGACCTTTTTGAAGCAGAACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGACAAAGGTTTCTAATTTCCATGCTAACTTGATTTCTTATTAAGTGTTTTAACTTCAATCTCCACTTGTCTCGTGACAGGTAGGTGAAGCTAACAACAACAAGGTTGATAAATAGTTTAGCTGAGCATCTGATTTAGAATTTTGCTTTTAGTTACTAGGAGCCAGCTTTCCGATGAGATCTAGATGTGTATGACACCACAAAAGCATCTCCTTCTTTGTTGATTCAAATAATTAACTCAGTAGATTGTGAGGGTCTTGTTTCACAGAATTCTGCTAACACATACGGGATGCGATCTAGATGTCCACGAGACTATTTTACGATGTGAGCTAGATGTCTATGACTCCACAGGAGCGTATCCTTACTTTCGATTCACTTATGGATGCTTTGATTCATTCTGAAACACTGGAGATTGAAAATCATAAGCTGGTTGTTTCCAAATTTATTAGAGTCATCAAGATCCTGTTATGTTTTTAAGGGTGTGCTTTCTGATTCCTCTTGTAGTATATGTCTATCTTATCTCTGTTAATGTTGCATTCGTGATTAGTAGATTATTGTCTTTATTTTGTTTCAACGTGTGTAGATCTACTGTGTGTTTTCTTATTCCTCTTGTTGTCTTGGATTTGGAATGTCTTAAATGTTCTGAATCATATGGAGGTTCAGGGTTAGTCATCTCACAAAAAGGAGGCTTCCGGGTTTATCTTTAGTGTAGTACAAAAGAGAGGGCACAAGGTGTGGATTTCTCTGTTTAACCGATTTTGTGGTTATCATATCCAGATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGTGTATGTACTATTATCTATTTTCTCATTCTGCTTATCATGACTTCTCTACATCATGTTGAATGTGTGTTTTAGTTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAGGTAATATTATGAACTGATGGAATATTTGAGTGGCCATGGAATAATCTCTATTCCAGTCCATTTTGAAGTTCTTATTAAATTTAGATTAGTTACCCTTTTCTGGCTTGTTTAGTTGATTCATCTGTGATATTAAGGTGGGCCCTTACCTCCATAGGTTGGTACGAAGTTGATGTATCAAAAGTTCTTTTGGTGGAGGTCAAGTTTTGATTCCGTCATTAGAATTTTCAGCAACTCTTGTTAGTGGCATTGGATAGTCTGATGTCCCAGTCAAATTTTACATCCGGATAGGCGTGAGAGATTCTAGAGTTAAGGAGGGGCTTGCGGATAATTTTATAACACCTTTAGATATTTCAAGAAAGCTTTAGAATATCCTAGATTATCTAGATTTTTCTAGAGAGGGAACAAAGTGTAAATATTTTAGGGACTTGTAAAGTAATTTTAAATTGCACTTAGCCCCTTAGTAGTATAAACAGAGGTGTCATTCATTTGCAATGCATCCCTCCTCAAGTGTAAAGCAGTCTTCCAAGCTAATACAAAGCCATCCTCAAAACTTCCCAAATCTTTCGAAGTCTTTCTTTGCATCGCTAAAGGCTTACTTGAGCTTACGAGATCTTGAAACAATAGTAAGTTGTCAAGGGTTGCACGGAGGTGTAGTGAAAACTCCAAGTCCGTGACGCCGAGGTGGTAATTGTACAATTTTTCCATCCGGAATCATCTTTCTTAACATTTAACATAATATTTTACTTCGTCATTTTGAAGGAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGCTCAAGCCTATGGTAAATTCAACATATAGATTGCAAGTTGTCATTGTTTGTCTACTAACTATCACACATTTTCCCAAGTTGAGAGATATTCATTATTATTTCTTCATTTTCCTCCAAATGCAGGATGAGTCACAGGATTTCTACAAAAAACAGCAGTTGCGTGAACTTGCAATGC</genome_strand>
        <mrna_strand>AAACAGAGGGACTCCTTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCTCAAAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGT........................................................................TTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGCTCAAGCCTATG...............................................................................................................GATGAGTCACAGGATTTCTACAAAAAACAGCAGTTGCGTGAACTTGCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719778" ref_strand="+" ref_description="SGN-E719778 [FC08DD09]">
      <seq>cggccgaattgagtccaaaagaagaaacagagggactcctttttggaaagtgaaaagtaggtgaatctggcagtcatcggattctgtcgccgccggtgaagatgtcttccggaagatacatggcctactcaccatctccgtctgctcctcagtctcctcatatcgccggacttcgctctgcttcctctgccatcgccgagcaagagaagtatctctcagagttacttgcagaacgccacaaactcggcccatttgtgcccgtccttcctcattgctatcgattgctgaatcaggaacttttgcgtgtaactacactgttggggaatgcatcagtgttagatcaaaatgggcttgaacatgctagccccctggcttcaggaggaatgttttcaaatggaggagctaatgtggacagatgggcatcaccatttcaatcagaaatatcaggtttaatgcactccccgtcgactcataactggcttaatactcaaagtaactcatcaggcctcatagtgaagcgaacactcagaattgatataccggtggatcaatatcctagttacaatttcgtgggccgacttctgggccctagagggaactctctaaagcgggtggaagctactactgaatgccgggttctgataagaggacgcggaagcatcaaagatccagtaaaggaagaaatgatgagaggcaaaccgggatatgagcacctgaatgagcctcttcatgttattgtggaagctgaactgccagtggagatcattgatgcccggctattgcaagcacgtgagatattggaagatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="129456" stop="123063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129165" g_stop="128960" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="208" r_length="203" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128959" i_stop="127564" i_length="1396">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127563" g_stop="127478" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="294" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127477" i_stop="125563" i_length="1915">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125562" g_stop="125417" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="440" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125416" i_stop="124576" i_length="841">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124575" g_stop="124456" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="560" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124455" i_stop="124372" i_length="84">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124371" g_stop="124255" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="677" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124254" i_stop="123496" i_length="759">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123495" g_stop="123363" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="810" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E719778" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129165" e_stop="128960"/>
          <exon e_start="127563" e_stop="127478"/>
          <exon e_start="125562" e_stop="125417"/>
          <exon e_start="124575" e_stop="124456"/>
          <exon e_start="124371" e_stop="124255"/>
          <exon e_start="123495" e_stop="123363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTGCCAGTCCAAAAGAAGAAACAGAGGGACTCCTTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAAGTGCGTTTTTCCTTTTTCTCTAACAACTTTGATTTTTTTGTTTGAAGTCTTCGTCTTTGTTGATTCAGTGGATCGTGCTGAAATTGGCTAAGCATATGTCCGATCTTCAGCTTTTTTGTTCCTTAATTTGTTGCTTTAATTTTACTATGTGGTTGTGATTTGTGACTTGATTTTCATTTTTTGGTTCAACGATTTATAAGTTGATTTATCTGAAAAGATCTGGTTTAGCTTCTTACTTAGTTAAAAGCATCAGTTTAAGGTTCAATATACTTTAACGCAATTTCAAACAATCTGGATTGGTTCTATGAATTCCTTGGATACTTTGATCAGGTTTGTTCCTCCAAAAAGTTGGTTTCTTTGATCTTATCAGAAGTTGCTTGTTACTGTTTCTTCTTCTTCGGTTCATTTTGTCAATTCTAATACTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTATTTACTTCTATCAGATGTTGATTGTTGCTGTTTCTTTTTCCTTCGGATCATTTTTTCAATTCAAATACTTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTCTTTGCTTCTATCGAATGTTGATTTTTGCTGTTTCTTCTTCCTTTGGATCATTTTTTTAATTCAAATACTTTTTTGGGTTGGTTGCTCTCGAAAAGTTTGTTTCTTTGCTTCTATCAGATGTTGATTGTTGCTGTTTCTTCTTCATTCGGTTCATTTTTTCAATTCAAATACTTTTTTGGGTTGGTTGCGTCGAGAAGTTTGTATCTTTGCTTCTATCAGATGTTGATTGTTATTATTTTTTCCCCTTCATTCAGAGAATTTGGTCCAATCTTCTCATAAGAAATTAAGAGAGGTGCAATTGTAAAGAAAAGATTCACTTTCTTGCTTGAATTACTCGGGCATTTATAACCCAAGAAGACTCTAGCACTTCGGCCTTGCAATAGCATTTTTTGTATGATCCCTTTTTCCCTACTTTGCTGATTGATAGAGTGGATCCGGGATTTTGAGTTGGCGGGTGTGGAGTACCACTGCACCCACTACTACTTTGTGGTGGTCGATGCAACTTTTGGTAAATGATTCAATTTGCTGCAGCCACTGACCAAATACTGCAACCCTGTCCTTCCGATTTGCATTTTGTTCCTATCTTAAGTGAACTTGTCTGCTTATTTTTGCTTATTCTAGTGCATCTTATGTGATTGACCAAATAGGAGATCTCGCTGCTCTATGTGCATTGTTTTTTCTCGATCTTCAGAAGATTGACAATAGCACAAACTAAATTAATTGGACTATCAAACTTGGAACAACCATCTTTTAAAGAGATACTGATGGTTTTCTTCTTATGTGTACCTATACCATAATTTGTTGCGAGTATTTAATTTGTCAATGTGTGTTAACAGGTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGGGTGAGTAGGAAGTTGAATTTTGATTAGTTCAGCCACTTGTGCTTCTGATATCAAAAAGTTTGTTTTATTGCTCAACCTGAGAGAAATCAAAGATTAGAGAATGAGGTGAAAAATATTTTAAGTTGATGAGTACATTCTTTTCATCTGAACAAAGATGATAAATCCATTGTATACGTCTGTTTTTGCTAATTGGGTGGAAGTTTAGGTCAAGTTTGGATCTTCTATGTTAAGTCAGTCAGCACTTTTTTCTGGACGACTCCCAACACTTTTTGTATATTCCATGATTGTCTTTTTGTTATTCATGTTTAACTAGATATTTGTCCCATAAAACGGGTATTAGTATCTCTAATTTCCTCCTCCTATGCAGTTTCTAAATAAAAATAAACAATTCCTTCTTCTATGGTCAGCTGTGGTCCGCTTACCGAGTGTATAGACCTACATGTCGTAATAGGTACCAAGGGAATTACATTTTACTTAACTGGGAAGCTTGTCACAAATTTGTTTATAAATAATGTTGTAACCACCCCCTGGCAAGAAAGAGAAGAGGTATAGAGAGTCATGGTATTGAATCCATGTTTATTTCCTATATGTTGGAAATAAACACTCCATTGTCCCATTCCAGTTCAAAGATAAAAAAGAACTTCACTATCCTTTTGTTACACCCTCCCACCCCCACCCCCCAAAGTATCCTATAGGTTTTTTCTTCACATTTATAATATGCTTCACTGACAATTTAAACTGTGATACCACACATATTATTTGTGAGCCTCTAAGTTTTAGATGGAAAGTGTTATTAAAATCATCTTTTGGCCAGATTGTGGGAAATTTGCTTATAGTTTTCAATGCAAATCCCAGCTTATTTCACCATCAGCCTGTCATATATTCTTGGCTGTACCGGGAAGTTTTCAAGTACTATTTAGCAGTGTAGCCTGTAACGGATCTGGAATAGAAAGAAACACGACACTAGTAGTATACAATATTAAGATGAGGACCATGAAATTGATCCTCGAAGTATAAGAAGCATGATGTGCATTGTGTGAAGCCTGTTTAGTATGAAGGGGAAGGTTGAATCGTTGTGTGATTAGTAATAACGCTCAAGTTTGAGCGGTGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGTTTTAACCATTCATCCACAAATTGGTCATCTTAGGAGTCTCTTTTGTCCATAACATTTAACTGATTGCTTTAACAATTCATTTTTTTTCTATAAATCCGTGAGATAACTAACCAATGAAGGATCGTGTTGTTGTCCATATTGTGGTGGCTGCTAACTGATTTATTAACCACTGCTAACTGGTACGTCTTATTCTTGGAAATTGACCTTTTTGAAGCAGAACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGACAAAGGTTTCTAATTTCCATGCTAACTTGATTTCTTATTAAGTGTTTTAACTTCAATCTCCACTTGTCTCGTGACAGGTAGGTGAAGCTAACAACAACAAGGTTGATAAATAGTTTAGCTGAGCATCTGATTTAGAATTTTGCTTTTAGTTACTAGGAGCCAGCTTTCCGATGAGATCTAGATGTGTATGACACCACAAAAGCATCTCCTTCTTTGTTGATTCAAATAATTAACTCAGTAGATTGTGAGGGTCTTGTTTCACAGAATTCTGCTAACACATACGGGATGCGATCTAGATGTCCACGAGACTATTTTACGATGTGAGCTAGATGTCTATGACTCCACAGGAGCGTATCCTTACTTTCGATTCACTTATGGATGCTTTGATTCATTCTGAAACACTGGAGATTGAAAATCATAAGCTGGTTGTTTCCAAATTTATTAGAGTCATCAAGATCCTGTTATGTTTTTAAGGGTGTGCTTTCTGATTCCTCTTGTAGTATATGTCTATCTTATCTCTGTTAATGTTGCATTCGTGATTAGTAGATTATTGTCTTTATTTTGTTTCAACGTGTGTAGATCTACTGTGTGTTTTCTTATTCCTCTTGTTGTCTTGGATTTGGAATGTCTTAAATGTTCTGAATCATATGGAGGTTCAGGGTTAGTCATCTCACAAAAAGGAGGCTTCCGGGTTTATCTTTAGTGTAGTACAAAAGAGAGGGCACAAGGTGTGGATTTCTCTGTTTAACCGATTTTGTGGTTATCATATCCAGATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGTGTATGTACTATTATCTATTTTCTCATTCTGCTTATCATGACTTCTCTACATCATGTTGAATGTGTGTTTTAGTTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAGGTAATATTATGAACTGATGGAATATTTGAGTGGCCATGGAATAATCTCTATTCCAGTCCATTTTGAAGTTCTTATTAAATTTAGATTAGTTACCCTTTTCTGGCTTGTTTAGTTGATTCATCTGTGATATTAAGGTGGGCCCTTACCTCCATAGGTTGGTACGAAGTTGATGTATCAAAAGTTCTTTTGGTGGAGGTCAAGTTTTGATTCCGTCATTAGAATTTTCAGCAACTCTTGTTAGTGGCATTGGATAGTCTGATGTCCCAGTCAAATTTTACATCCGGATAGGCGTGAGAGATTCTAGAGTTAAGGAGGGGCTTGCGGATAATTTTATAACACCTTTAGATATTTCAAGAAAGCTTTAGAATATCCTAGATTATCTAGATTTTTCTAGAGAGGGAACAAAGTGTAAATATTTTAGGGACTTGTAAAGTAATTTTAAATTGCACTTAGCCCCTTAGTAGTATAAACAGAGGTGTCATTCATTTGCAATGCATCCCTCCTCAAGTGTAAAGCAGTCTTCCAAGCTAATACAAAGCCATCCTCAAAACTTCCCAAATCTTTCGAAGTCTTTCTTTGCATCGCTAAAGGCTTACTTGAGCTTACGAGATCTTGAAACAATAGTAAGTTGTCAAGGGTTGCACGGAGGTGTAGTGAAAACTCCAAGTCCGTGACGCCGAGGTGGTAATTGTACAATTTTTCCATCCGGAATCATCTTTCTTAACATTTAACATAATATTTTACTTCGTCATTTTGAAGGAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGC</genome_strand>
        <mrna_strand>G-AATTG--AGTCCAAAAGAAGAAACAGAGGGACTCCTTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGGTTTAATGCACTCCCCGTCGACTCATAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGT....................................................................................TACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249595" ref_strand="+" ref_description="SGN-E249595 [cLEF-56-C6]">
      <seq>aagtgggtgaatctggcagtcatcggattctgtcgccgccggtgaagatgtcttccggaagatacatggcctactcaccatctccgtctgctcctcagtctcctcatatcgccggacttcgctctgcttcctctgccatcgccgagcaagagaagtatctctcagagttacttgcagaacgccacaaactcggcccatttgtgcccgtccttcctcattgctatcgattgctgaatcaggatatcaggtttaatgcactccccgtcgactcagaactggcttaatactcaaagtaactcatcaggcctcatagtgaagcgaacactcagaattgatataccggtggatcaatatcctagtttacctttgcagtacaatttcgtgggccgacttctgggccctagagggaactctctaaagcgggtggaagctactactgaatgccgggttctgataagaggacgcggaagcatcaaagatccagtaaaggaagaaatgatgagaggcaaaccgggatatgagcacctgaatgagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="129413" stop="123148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129113" g_stop="128960" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128959" i_stop="127564" i_length="1396">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127563" g_stop="127478" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="240" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127477" i_stop="124576" i_length="2902">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124575" g_stop="124456" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="360" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124455" i_stop="124384" i_length="72">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124383" g_stop="124255" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="489" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124254" i_stop="123496" i_length="759">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123495" g_stop="123448" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="537" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E249595" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129113" e_stop="128960"/>
          <exon e_start="127563" e_stop="127478"/>
          <exon e_start="124575" e_stop="124456"/>
          <exon e_start="124383" e_stop="124255"/>
          <exon e_start="123495" e_stop="123448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAAGTGCGTTTTTCCTTTTTCTCTAACAACTTTGATTTTTTTGTTTGAAGTCTTCGTCTTTGTTGATTCAGTGGATCGTGCTGAAATTGGCTAAGCATATGTCCGATCTTCAGCTTTTTTGTTCCTTAATTTGTTGCTTTAATTTTACTATGTGGTTGTGATTTGTGACTTGATTTTCATTTTTTGGTTCAACGATTTATAAGTTGATTTATCTGAAAAGATCTGGTTTAGCTTCTTACTTAGTTAAAAGCATCAGTTTAAGGTTCAATATACTTTAACGCAATTTCAAACAATCTGGATTGGTTCTATGAATTCCTTGGATACTTTGATCAGGTTTGTTCCTCCAAAAAGTTGGTTTCTTTGATCTTATCAGAAGTTGCTTGTTACTGTTTCTTCTTCTTCGGTTCATTTTGTCAATTCTAATACTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTATTTACTTCTATCAGATGTTGATTGTTGCTGTTTCTTTTTCCTTCGGATCATTTTTTCAATTCAAATACTTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTCTTTGCTTCTATCGAATGTTGATTTTTGCTGTTTCTTCTTCCTTTGGATCATTTTTTTAATTCAAATACTTTTTTGGGTTGGTTGCTCTCGAAAAGTTTGTTTCTTTGCTTCTATCAGATGTTGATTGTTGCTGTTTCTTCTTCATTCGGTTCATTTTTTCAATTCAAATACTTTTTTGGGTTGGTTGCGTCGAGAAGTTTGTATCTTTGCTTCTATCAGATGTTGATTGTTATTATTTTTTCCCCTTCATTCAGAGAATTTGGTCCAATCTTCTCATAAGAAATTAAGAGAGGTGCAATTGTAAAGAAAAGATTCACTTTCTTGCTTGAATTACTCGGGCATTTATAACCCAAGAAGACTCTAGCACTTCGGCCTTGCAATAGCATTTTTTGTATGATCCCTTTTTCCCTACTTTGCTGATTGATAGAGTGGATCCGGGATTTTGAGTTGGCGGGTGTGGAGTACCACTGCACCCACTACTACTTTGTGGTGGTCGATGCAACTTTTGGTAAATGATTCAATTTGCTGCAGCCACTGACCAAATACTGCAACCCTGTCCTTCCGATTTGCATTTTGTTCCTATCTTAAGTGAACTTGTCTGCTTATTTTTGCTTATTCTAGTGCATCTTATGTGATTGACCAAATAGGAGATCTCGCTGCTCTATGTGCATTGTTTTTTCTCGATCTTCAGAAGATTGACAATAGCACAAACTAAATTAATTGGACTATCAAACTTGGAACAACCATCTTTTAAAGAGATACTGATGGTTTTCTTCTTATGTGTACCTATACCATAATTTGTTGCGAGTATTTAATTTGTCAATGTGTGTTAACAGGTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGGGTGAGTAGGAAGTTGAATTTTGATTAGTTCAGCCACTTGTGCTTCTGATATCAAAAAGTTTGTTTTATTGCTCAACCTGAGAGAAATCAAAGATTAGAGAATGAGGTGAAAAATATTTTAAGTTGATGAGTACATTCTTTTCATCTGAACAAAGATGATAAATCCATTGTATACGTCTGTTTTTGCTAATTGGGTGGAAGTTTAGGTCAAGTTTGGATCTTCTATGTTAAGTCAGTCAGCACTTTTTTCTGGACGACTCCCAACACTTTTTGTATATTCCATGATTGTCTTTTTGTTATTCATGTTTAACTAGATATTTGTCCCATAAAACGGGTATTAGTATCTCTAATTTCCTCCTCCTATGCAGTTTCTAAATAAAAATAAACAATTCCTTCTTCTATGGTCAGCTGTGGTCCGCTTACCGAGTGTATAGACCTACATGTCGTAATAGGTACCAAGGGAATTACATTTTACTTAACTGGGAAGCTTGTCACAAATTTGTTTATAAATAATGTTGTAACCACCCCCTGGCAAGAAAGAGAAGAGGTATAGAGAGTCATGGTATTGAATCCATGTTTATTTCCTATATGTTGGAAATAAACACTCCATTGTCCCATTCCAGTTCAAAGATAAAAAAGAACTTCACTATCCTTTTGTTACACCCTCCCACCCCCACCCCCCAAAGTATCCTATAGGTTTTTTCTTCACATTTATAATATGCTTCACTGACAATTTAAACTGTGATACCACACATATTATTTGTGAGCCTCTAAGTTTTAGATGGAAAGTGTTATTAAAATCATCTTTTGGCCAGATTGTGGGAAATTTGCTTATAGTTTTCAATGCAAATCCCAGCTTATTTCACCATCAGCCTGTCATATATTCTTGGCTGTACCGGGAAGTTTTCAAGTACTATTTAGCAGTGTAGCCTGTAACGGATCTGGAATAGAAAGAAACACGACACTAGTAGTATACAATATTAAGATGAGGACCATGAAATTGATCCTCGAAGTATAAGAAGCATGATGTGCATTGTGTGAAGCCTGTTTAGTATGAAGGGGAAGGTTGAATCGTTGTGTGATTAGTAATAACGCTCAAGTTTGAGCGGTGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGTTTTAACCATTCATCCACAAATTGGTCATCTTAGGAGTCTCTTTTGTCCATAACATTTAACTGATTGCTTTAACAATTCATTTTTTTTCTATAAATCCGTGAGATAACTAACCAATGAAGGATCGTGTTGTTGTCCATATTGTGGTGGCTGCTAACTGATTTATTAACCACTGCTAACTGGTACGTCTTATTCTTGGAAATTGACCTTTTTGAAGCAGAACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGACAAAGGTTTCTAATTTCCATGCTAACTTGATTTCTTATTAAGTGTTTTAACTTCAATCTCCACTTGTCTCGTGACAGGTAGGTGAAGCTAACAACAACAAGGTTGATAAATAGTTTAGCTGAGCATCTGATTTAGAATTTTGCTTTTAGTTACTAGGAGCCAGCTTTCCGATGAGATCTAGATGTGTATGACACCACAAAAGCATCTCCTTCTTTGTTGATTCAAATAATTAACTCAGTAGATTGTGAGGGTCTTGTTTCACAGAATTCTGCTAACACATACGGGATGCGATCTAGATGTCCACGAGACTATTTTACGATGTGAGCTAGATGTCTATGACTCCACAGGAGCGTATCCTTACTTTCGATTCACTTATGGATGCTTTGATTCATTCTGAAACACTGGAGATTGAAAATCATAAGCTGGTTGTTTCCAAATTTATTAGAGTCATCAAGATCCTGTTATGTTTTTAAGGGTGTGCTTTCTGATTCCTCTTGTAGTATATGTCTATCTTATCTCTGTTAATGTTGCATTCGTGATTAGTAGATTATTGTCTTTATTTTGTTTCAACGTGTGTAGATCTACTGTGTGTTTTCTTATTCCTCTTGTTGTCTTGGATTTGGAATGTCTTAAATGTTCTGAATCATATGGAGGTTCAGGGTTAGTCATCTCACAAAAAGGAGGCTTCCGGGTTTATCTTTAGTGTAGTACAAAAGAGAGGGCACAAGGTGTGGATTTCTCTGTTTAACCGATTTTGTGGTTATCATATCCAGATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGTGTATGTACTATTATCTATTTTCTCATTCTGCTTATCATGACTTCTCTACATCATGTTGAATGTGTGTTTTAGTTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAGGTAATATTATGAACTGATGGAATATTTGAGTGGCCATGGAATAATCTCTATTCCAGTCCATTTTGAAGTTCTTATTAAATTTAGATTAGTTACCCTTTTCTGGCTTGTTTAGTTGATTCATCTGTGATATTAAGGTGGGCCCTTACCTCCATAGGTTGGTACGAAGTTGATGTATCAAAAGTTCTTTTGGTGGAGGTCAAGTTTTGATTCCGTCATTAGAATTTTCAGCAACTCTTGTTAGTGGCATTGGATAGTCTGATGTCCCAGTCAAATTTTACATCCGGATAGGCGTGAGAGATTCTAGAGTTAAGGAGGGGCTTGCGGATAATTTTATAACACCTTTAGATATTTCAAGAAAGCTTTAGAATATCCTAGATTATCTAGATTTTTCTAGAGAGGGAACAAAGTGTAAATATTTTAGGGACTTGTAAAGTAATTTTAAATTGCACTTAGCCCCTTAGTAGTATAAACAGAGGTGTCATTCATTTGCAATGCATCCCTCCTCAAGTGTAAAGCAGTCTTCCAAGCTAATACAAAGCCATCCTCAAAACTTCCCAAATCTTTCGAAGTCTTTCTTTGCATCGCTAAAGGCTTACTTGAGCTTACGAGATCTTGAAACAATAGTAAGTTGTCAAGGGTTGCACGGAGGTGTAGTGAAAACTCCAAGTCCGTGACGCCGAGGTGGTAATTGTACAATTTTTCCATCCGGAATCATCTTTCTTAACATTTAACATAATATTTTACTTCGTCATTTTGAAGGAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCT</genome_strand>
        <mrna_strand>AAGTGGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGT........................................................................TTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273012" ref_strand="+" ref_description="SGN-E273012 [cLEM-25-H17]">
      <seq>tttttggaaagtgaaaagtaggtgaatctggcagtcatcggattctgtcgccgccggtgaagatgtcttccggaagatacatggcctactcaccatctccgtctgctcctcagtctcctcatatcgccggacttcgctctgcttcctctgccatcgccgagcaagagaagtatctctcagagttacttgcagaacgccacaaactcggcccatttgtgcccgtccttcctcattgctatcgattgctgaatcaggaacttttgcgtgtaactacactgttggggaatgcatcagtgttagatcaaaatgggcttgaacatgctagccccctggcttcaggaggaatgttttcaaatggaggagctaatgtggacagatgggcatcaccatttcaatcagaaatatcaggtttaatgcactccccgtcgactcagaactggcttaatactcaaagtaactcatcaggcctcatagtgaagcgaacactcagaattgatataccggtggatcaatatcctagttacaatttcgtgggccgacttctgggccctagagggaactctctaaagcgggtggaagctactactgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="129428" stop="124001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129128" g_stop="128960" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128959" i_stop="127564" i_length="1396">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127563" g_stop="127478" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="255" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127477" i_stop="125563" i_length="1915">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125562" g_stop="125417" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="401" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125416" i_stop="124576" i_length="841">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124575" g_stop="124456" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="521" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124455" i_stop="124372" i_length="84">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124371" g_stop="124301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="592" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E273012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129128" e_stop="128960"/>
          <exon e_start="127563" e_stop="127478"/>
          <exon e_start="125562" e_stop="125417"/>
          <exon e_start="124575" e_stop="124456"/>
          <exon e_start="124371" e_stop="124301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAAGTGCGTTTTTCCTTTTTCTCTAACAACTTTGATTTTTTTGTTTGAAGTCTTCGTCTTTGTTGATTCAGTGGATCGTGCTGAAATTGGCTAAGCATATGTCCGATCTTCAGCTTTTTTGTTCCTTAATTTGTTGCTTTAATTTTACTATGTGGTTGTGATTTGTGACTTGATTTTCATTTTTTGGTTCAACGATTTATAAGTTGATTTATCTGAAAAGATCTGGTTTAGCTTCTTACTTAGTTAAAAGCATCAGTTTAAGGTTCAATATACTTTAACGCAATTTCAAACAATCTGGATTGGTTCTATGAATTCCTTGGATACTTTGATCAGGTTTGTTCCTCCAAAAAGTTGGTTTCTTTGATCTTATCAGAAGTTGCTTGTTACTGTTTCTTCTTCTTCGGTTCATTTTGTCAATTCTAATACTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTATTTACTTCTATCAGATGTTGATTGTTGCTGTTTCTTTTTCCTTCGGATCATTTTTTCAATTCAAATACTTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTCTTTGCTTCTATCGAATGTTGATTTTTGCTGTTTCTTCTTCCTTTGGATCATTTTTTTAATTCAAATACTTTTTTGGGTTGGTTGCTCTCGAAAAGTTTGTTTCTTTGCTTCTATCAGATGTTGATTGTTGCTGTTTCTTCTTCATTCGGTTCATTTTTTCAATTCAAATACTTTTTTGGGTTGGTTGCGTCGAGAAGTTTGTATCTTTGCTTCTATCAGATGTTGATTGTTATTATTTTTTCCCCTTCATTCAGAGAATTTGGTCCAATCTTCTCATAAGAAATTAAGAGAGGTGCAATTGTAAAGAAAAGATTCACTTTCTTGCTTGAATTACTCGGGCATTTATAACCCAAGAAGACTCTAGCACTTCGGCCTTGCAATAGCATTTTTTGTATGATCCCTTTTTCCCTACTTTGCTGATTGATAGAGTGGATCCGGGATTTTGAGTTGGCGGGTGTGGAGTACCACTGCACCCACTACTACTTTGTGGTGGTCGATGCAACTTTTGGTAAATGATTCAATTTGCTGCAGCCACTGACCAAATACTGCAACCCTGTCCTTCCGATTTGCATTTTGTTCCTATCTTAAGTGAACTTGTCTGCTTATTTTTGCTTATTCTAGTGCATCTTATGTGATTGACCAAATAGGAGATCTCGCTGCTCTATGTGCATTGTTTTTTCTCGATCTTCAGAAGATTGACAATAGCACAAACTAAATTAATTGGACTATCAAACTTGGAACAACCATCTTTTAAAGAGATACTGATGGTTTTCTTCTTATGTGTACCTATACCATAATTTGTTGCGAGTATTTAATTTGTCAATGTGTGTTAACAGGTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGGGTGAGTAGGAAGTTGAATTTTGATTAGTTCAGCCACTTGTGCTTCTGATATCAAAAAGTTTGTTTTATTGCTCAACCTGAGAGAAATCAAAGATTAGAGAATGAGGTGAAAAATATTTTAAGTTGATGAGTACATTCTTTTCATCTGAACAAAGATGATAAATCCATTGTATACGTCTGTTTTTGCTAATTGGGTGGAAGTTTAGGTCAAGTTTGGATCTTCTATGTTAAGTCAGTCAGCACTTTTTTCTGGACGACTCCCAACACTTTTTGTATATTCCATGATTGTCTTTTTGTTATTCATGTTTAACTAGATATTTGTCCCATAAAACGGGTATTAGTATCTCTAATTTCCTCCTCCTATGCAGTTTCTAAATAAAAATAAACAATTCCTTCTTCTATGGTCAGCTGTGGTCCGCTTACCGAGTGTATAGACCTACATGTCGTAATAGGTACCAAGGGAATTACATTTTACTTAACTGGGAAGCTTGTCACAAATTTGTTTATAAATAATGTTGTAACCACCCCCTGGCAAGAAAGAGAAGAGGTATAGAGAGTCATGGTATTGAATCCATGTTTATTTCCTATATGTTGGAAATAAACACTCCATTGTCCCATTCCAGTTCAAAGATAAAAAAGAACTTCACTATCCTTTTGTTACACCCTCCCACCCCCACCCCCCAAAGTATCCTATAGGTTTTTTCTTCACATTTATAATATGCTTCACTGACAATTTAAACTGTGATACCACACATATTATTTGTGAGCCTCTAAGTTTTAGATGGAAAGTGTTATTAAAATCATCTTTTGGCCAGATTGTGGGAAATTTGCTTATAGTTTTCAATGCAAATCCCAGCTTATTTCACCATCAGCCTGTCATATATTCTTGGCTGTACCGGGAAGTTTTCAAGTACTATTTAGCAGTGTAGCCTGTAACGGATCTGGAATAGAAAGAAACACGACACTAGTAGTATACAATATTAAGATGAGGACCATGAAATTGATCCTCGAAGTATAAGAAGCATGATGTGCATTGTGTGAAGCCTGTTTAGTATGAAGGGGAAGGTTGAATCGTTGTGTGATTAGTAATAACGCTCAAGTTTGAGCGGTGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGTTTTAACCATTCATCCACAAATTGGTCATCTTAGGAGTCTCTTTTGTCCATAACATTTAACTGATTGCTTTAACAATTCATTTTTTTTCTATAAATCCGTGAGATAACTAACCAATGAAGGATCGTGTTGTTGTCCATATTGTGGTGGCTGCTAACTGATTTATTAACCACTGCTAACTGGTACGTCTTATTCTTGGAAATTGACCTTTTTGAAGCAGAACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGACAAAGGTTTCTAATTTCCATGCTAACTTGATTTCTTATTAAGTGTTTTAACTTCAATCTCCACTTGTCTCGTGACAGGTAGGTGAAGCTAACAACAACAAGGTTGATAAATAGTTTAGCTGAGCATCTGATTTAGAATTTTGCTTTTAGTTACTAGGAGCCAGCTTTCCGATGAGATCTAGATGTGTATGACACCACAAAAGCATCTCCTTCTTTGTTGATTCAAATAATTAACTCAGTAGATTGTGAGGGTCTTGTTTCACAGAATTCTGCTAACACATACGGGATGCGATCTAGATGTCCACGAGACTATTTTACGATGTGAGCTAGATGTCTATGACTCCACAGGAGCGTATCCTTACTTTCGATTCACTTATGGATGCTTTGATTCATTCTGAAACACTGGAGATTGAAAATCATAAGCTGGTTGTTTCCAAATTTATTAGAGTCATCAAGATCCTGTTATGTTTTTAAGGGTGTGCTTTCTGATTCCTCTTGTAGTATATGTCTATCTTATCTCTGTTAATGTTGCATTCGTGATTAGTAGATTATTGTCTTTATTTTGTTTCAACGTGTGTAGATCTACTGTGTGTTTTCTTATTCCTCTTGTTGTCTTGGATTTGGAATGTCTTAAATGTTCTGAATCATATGGAGGTTCAGGGTTAGTCATCTCACAAAAAGGAGGCTTCCGGGTTTATCTTTAGTGTAGTACAAAAGAGAGGGCACAAGGTGTGGATTTCTCTGTTTAACCGATTTTGTGGTTATCATATCCAGATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGTGTATGTACTATTATCTATTTTCTCATTCTGCTTATCATGACTTCTCTACATCATGTTGAATGTGTGTTTTAGTTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATG</genome_strand>
        <mrna_strand>TTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGT....................................................................................TACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299732" ref_strand="+" ref_description="SGN-E299732 [cLEW-1-F4]">
      <seq>tttggaaagtgaaaagtaggtgaatctggcagtcatcggattctgtcgccgccggtgaagatgtcttccggaagatacatggcctactcaccatctccgtctgctcctcagtctcctcatatcgccggacttcgctctgcttcctctgccatcgccgagcaagagaagtatctctcagagttacttgcagaacgccacaaactcggcccatttgtgcccgtccttcctcattgctatcgattgctgaatcaggaacttttgcgtgtaactacactgttggggaatgcatcagtgttagatcaaaatgggcttgaacatgctagccccctggcttcaggaggaatgttttcaaatggaggagctaatgtggacagatgggcatcaccatttcaatcagaagtaggtgaagctaacaacaacaagatatcaggtttaatgcactccccgtcgactcagaactggcttaatactcaaagtaactcatcaggcctcatagtgaagcgaacactcagaattgatatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="129426" stop="124175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129126" g_stop="128960" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128959" i_stop="127564" i_length="1396">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127563" g_stop="127478" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="253" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127477" i_stop="125563" i_length="1915">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125562" g_stop="125417" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="399" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125416" i_stop="125272" i_length="145">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125271" g_stop="125248" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="423" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125247" i_stop="124576" i_length="672">
            <donor d_prob="0.899" d_score="0.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124575" g_stop="124475" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="524" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E299732" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129126" e_stop="128960"/>
          <exon e_start="127563" e_stop="127478"/>
          <exon e_start="125562" e_stop="125417"/>
          <exon e_start="125271" e_stop="125248"/>
          <exon e_start="124575" e_stop="124475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAAGTGCGTTTTTCCTTTTTCTCTAACAACTTTGATTTTTTTGTTTGAAGTCTTCGTCTTTGTTGATTCAGTGGATCGTGCTGAAATTGGCTAAGCATATGTCCGATCTTCAGCTTTTTTGTTCCTTAATTTGTTGCTTTAATTTTACTATGTGGTTGTGATTTGTGACTTGATTTTCATTTTTTGGTTCAACGATTTATAAGTTGATTTATCTGAAAAGATCTGGTTTAGCTTCTTACTTAGTTAAAAGCATCAGTTTAAGGTTCAATATACTTTAACGCAATTTCAAACAATCTGGATTGGTTCTATGAATTCCTTGGATACTTTGATCAGGTTTGTTCCTCCAAAAAGTTGGTTTCTTTGATCTTATCAGAAGTTGCTTGTTACTGTTTCTTCTTCTTCGGTTCATTTTGTCAATTCTAATACTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTATTTACTTCTATCAGATGTTGATTGTTGCTGTTTCTTTTTCCTTCGGATCATTTTTTCAATTCAAATACTTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTCTTTGCTTCTATCGAATGTTGATTTTTGCTGTTTCTTCTTCCTTTGGATCATTTTTTTAATTCAAATACTTTTTTGGGTTGGTTGCTCTCGAAAAGTTTGTTTCTTTGCTTCTATCAGATGTTGATTGTTGCTGTTTCTTCTTCATTCGGTTCATTTTTTCAATTCAAATACTTTTTTGGGTTGGTTGCGTCGAGAAGTTTGTATCTTTGCTTCTATCAGATGTTGATTGTTATTATTTTTTCCCCTTCATTCAGAGAATTTGGTCCAATCTTCTCATAAGAAATTAAGAGAGGTGCAATTGTAAAGAAAAGATTCACTTTCTTGCTTGAATTACTCGGGCATTTATAACCCAAGAAGACTCTAGCACTTCGGCCTTGCAATAGCATTTTTTGTATGATCCCTTTTTCCCTACTTTGCTGATTGATAGAGTGGATCCGGGATTTTGAGTTGGCGGGTGTGGAGTACCACTGCACCCACTACTACTTTGTGGTGGTCGATGCAACTTTTGGTAAATGATTCAATTTGCTGCAGCCACTGACCAAATACTGCAACCCTGTCCTTCCGATTTGCATTTTGTTCCTATCTTAAGTGAACTTGTCTGCTTATTTTTGCTTATTCTAGTGCATCTTATGTGATTGACCAAATAGGAGATCTCGCTGCTCTATGTGCATTGTTTTTTCTCGATCTTCAGAAGATTGACAATAGCACAAACTAAATTAATTGGACTATCAAACTTGGAACAACCATCTTTTAAAGAGATACTGATGGTTTTCTTCTTATGTGTACCTATACCATAATTTGTTGCGAGTATTTAATTTGTCAATGTGTGTTAACAGGTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGGGTGAGTAGGAAGTTGAATTTTGATTAGTTCAGCCACTTGTGCTTCTGATATCAAAAAGTTTGTTTTATTGCTCAACCTGAGAGAAATCAAAGATTAGAGAATGAGGTGAAAAATATTTTAAGTTGATGAGTACATTCTTTTCATCTGAACAAAGATGATAAATCCATTGTATACGTCTGTTTTTGCTAATTGGGTGGAAGTTTAGGTCAAGTTTGGATCTTCTATGTTAAGTCAGTCAGCACTTTTTTCTGGACGACTCCCAACACTTTTTGTATATTCCATGATTGTCTTTTTGTTATTCATGTTTAACTAGATATTTGTCCCATAAAACGGGTATTAGTATCTCTAATTTCCTCCTCCTATGCAGTTTCTAAATAAAAATAAACAATTCCTTCTTCTATGGTCAGCTGTGGTCCGCTTACCGAGTGTATAGACCTACATGTCGTAATAGGTACCAAGGGAATTACATTTTACTTAACTGGGAAGCTTGTCACAAATTTGTTTATAAATAATGTTGTAACCACCCCCTGGCAAGAAAGAGAAGAGGTATAGAGAGTCATGGTATTGAATCCATGTTTATTTCCTATATGTTGGAAATAAACACTCCATTGTCCCATTCCAGTTCAAAGATAAAAAAGAACTTCACTATCCTTTTGTTACACCCTCCCACCCCCACCCCCCAAAGTATCCTATAGGTTTTTTCTTCACATTTATAATATGCTTCACTGACAATTTAAACTGTGATACCACACATATTATTTGTGAGCCTCTAAGTTTTAGATGGAAAGTGTTATTAAAATCATCTTTTGGCCAGATTGTGGGAAATTTGCTTATAGTTTTCAATGCAAATCCCAGCTTATTTCACCATCAGCCTGTCATATATTCTTGGCTGTACCGGGAAGTTTTCAAGTACTATTTAGCAGTGTAGCCTGTAACGGATCTGGAATAGAAAGAAACACGACACTAGTAGTATACAATATTAAGATGAGGACCATGAAATTGATCCTCGAAGTATAAGAAGCATGATGTGCATTGTGTGAAGCCTGTTTAGTATGAAGGGGAAGGTTGAATCGTTGTGTGATTAGTAATAACGCTCAAGTTTGAGCGGTGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGTTTTAACCATTCATCCACAAATTGGTCATCTTAGGAGTCTCTTTTGTCCATAACATTTAACTGATTGCTTTAACAATTCATTTTTTTTCTATAAATCCGTGAGATAACTAACCAATGAAGGATCGTGTTGTTGTCCATATTGTGGTGGCTGCTAACTGATTTATTAACCACTGCTAACTGGTACGTCTTATTCTTGGAAATTGACCTTTTTGAAGCAGAACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGACAAAGGTTTCTAATTTCCATGCTAACTTGATTTCTTATTAAGTGTTTTAACTTCAATCTCCACTTGTCTCGTGACAGGTAGGTGAAGCTAACAACAACAAGGTTGATAAATAGTTTAGCTGAGCATCTGATTTAGAATTTTGCTTTTAGTTACTAGGAGCCAGCTTTCCGATGAGATCTAGATGTGTATGACACCACAAAAGCATCTCCTTCTTTGTTGATTCAAATAATTAACTCAGTAGATTGTGAGGGTCTTGTTTCACAGAATTCTGCTAACACATACGGGATGCGATCTAGATGTCCACGAGACTATTTTACGATGTGAGCTAGATGTCTATGACTCCACAGGAGCGTATCCTTACTTTCGATTCACTTATGGATGCTTTGATTCATTCTGAAACACTGGAGATTGAAAATCATAAGCTGGTTGTTTCCAAATTTATTAGAGTCATCAAGATCCTGTTATGTTTTTAAGGGTGTGCTTTCTGATTCCTCTTGTAGTATATGTCTATCTTATCTCTGTTAATGTTGCATTCGTGATTAGTAGATTATTGTCTTTATTTTGTTTCAACGTGTGTAGATCTACTGTGTGTTTTCTTATTCCTCTTGTTGTCTTGGATTTGGAATGTCTTAAATGTTCTGAATCATATGGAGGTTCAGGGTTAGTCATCTCACAAAAAGGAGGCTTCCGGGTTTATCTTTAGTGTAGTACAAAAGAGAGGGCACAAGGTGTGGATTTCTCTGTTTAACCGATTTTGTGGTTATCATATCCAGATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACC</genome_strand>
        <mrna_strand>TTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAA.................................................................................................................................................GTAGGTGAAGCTAACAACAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307138" ref_strand="+" ref_description="SGN-E307138 [cLEY-15-I13]">
      <seq>tttttggaaagtgaaaagtaggtgaatctggcagtcatcggattctgtcgccgccggtgaagatgtcttccggaagatacatggcctactcaccatctccgtctgctcctcagtctcctcatatcgccggacttcgctctgcttcctctgccatcgccgagcaagagaagtatctctcagagttacttgcagaacgccacaaactcggcccatttgtgcccgtccttcctcattgctatcgattgctgaatcaggaacttttgcgtgtaactacactgttggggaatgcatcagtgttagatcaaaatgggcttgaacatgctagccccctggcttcaggaggaatgttttcaaatggaggagctaatgtggacagatgggcatcaccatttcaatcagaagtatggatactaactattaacataacctcttttagatctgattttatatgtttgaaaagcttttctgacaaaggtttctaatttccatgctaacttgatttcttattaagtgttttaacttcaatctccacttgtctcgtgacaggtaggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="129428" stop="124963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129128" g_stop="128960" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128959" i_stop="127564" i_length="1396">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127563" g_stop="127478" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="255" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127477" i_stop="125563" i_length="1915">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125562" g_stop="125263" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="555" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E307138" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129128" e_stop="128960"/>
          <exon e_start="127563" e_stop="127478"/>
          <exon e_start="125562" e_stop="125263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAAGTGCGTTTTTCCTTTTTCTCTAACAACTTTGATTTTTTTGTTTGAAGTCTTCGTCTTTGTTGATTCAGTGGATCGTGCTGAAATTGGCTAAGCATATGTCCGATCTTCAGCTTTTTTGTTCCTTAATTTGTTGCTTTAATTTTACTATGTGGTTGTGATTTGTGACTTGATTTTCATTTTTTGGTTCAACGATTTATAAGTTGATTTATCTGAAAAGATCTGGTTTAGCTTCTTACTTAGTTAAAAGCATCAGTTTAAGGTTCAATATACTTTAACGCAATTTCAAACAATCTGGATTGGTTCTATGAATTCCTTGGATACTTTGATCAGGTTTGTTCCTCCAAAAAGTTGGTTTCTTTGATCTTATCAGAAGTTGCTTGTTACTGTTTCTTCTTCTTCGGTTCATTTTGTCAATTCTAATACTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTATTTACTTCTATCAGATGTTGATTGTTGCTGTTTCTTTTTCCTTCGGATCATTTTTTCAATTCAAATACTTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTCTTTGCTTCTATCGAATGTTGATTTTTGCTGTTTCTTCTTCCTTTGGATCATTTTTTTAATTCAAATACTTTTTTGGGTTGGTTGCTCTCGAAAAGTTTGTTTCTTTGCTTCTATCAGATGTTGATTGTTGCTGTTTCTTCTTCATTCGGTTCATTTTTTCAATTCAAATACTTTTTTGGGTTGGTTGCGTCGAGAAGTTTGTATCTTTGCTTCTATCAGATGTTGATTGTTATTATTTTTTCCCCTTCATTCAGAGAATTTGGTCCAATCTTCTCATAAGAAATTAAGAGAGGTGCAATTGTAAAGAAAAGATTCACTTTCTTGCTTGAATTACTCGGGCATTTATAACCCAAGAAGACTCTAGCACTTCGGCCTTGCAATAGCATTTTTTGTATGATCCCTTTTTCCCTACTTTGCTGATTGATAGAGTGGATCCGGGATTTTGAGTTGGCGGGTGTGGAGTACCACTGCACCCACTACTACTTTGTGGTGGTCGATGCAACTTTTGGTAAATGATTCAATTTGCTGCAGCCACTGACCAAATACTGCAACCCTGTCCTTCCGATTTGCATTTTGTTCCTATCTTAAGTGAACTTGTCTGCTTATTTTTGCTTATTCTAGTGCATCTTATGTGATTGACCAAATAGGAGATCTCGCTGCTCTATGTGCATTGTTTTTTCTCGATCTTCAGAAGATTGACAATAGCACAAACTAAATTAATTGGACTATCAAACTTGGAACAACCATCTTTTAAAGAGATACTGATGGTTTTCTTCTTATGTGTACCTATACCATAATTTGTTGCGAGTATTTAATTTGTCAATGTGTGTTAACAGGTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGGGTGAGTAGGAAGTTGAATTTTGATTAGTTCAGCCACTTGTGCTTCTGATATCAAAAAGTTTGTTTTATTGCTCAACCTGAGAGAAATCAAAGATTAGAGAATGAGGTGAAAAATATTTTAAGTTGATGAGTACATTCTTTTCATCTGAACAAAGATGATAAATCCATTGTATACGTCTGTTTTTGCTAATTGGGTGGAAGTTTAGGTCAAGTTTGGATCTTCTATGTTAAGTCAGTCAGCACTTTTTTCTGGACGACTCCCAACACTTTTTGTATATTCCATGATTGTCTTTTTGTTATTCATGTTTAACTAGATATTTGTCCCATAAAACGGGTATTAGTATCTCTAATTTCCTCCTCCTATGCAGTTTCTAAATAAAAATAAACAATTCCTTCTTCTATGGTCAGCTGTGGTCCGCTTACCGAGTGTATAGACCTACATGTCGTAATAGGTACCAAGGGAATTACATTTTACTTAACTGGGAAGCTTGTCACAAATTTGTTTATAAATAATGTTGTAACCACCCCCTGGCAAGAAAGAGAAGAGGTATAGAGAGTCATGGTATTGAATCCATGTTTATTTCCTATATGTTGGAAATAAACACTCCATTGTCCCATTCCAGTTCAAAGATAAAAAAGAACTTCACTATCCTTTTGTTACACCCTCCCACCCCCACCCCCCAAAGTATCCTATAGGTTTTTTCTTCACATTTATAATATGCTTCACTGACAATTTAAACTGTGATACCACACATATTATTTGTGAGCCTCTAAGTTTTAGATGGAAAGTGTTATTAAAATCATCTTTTGGCCAGATTGTGGGAAATTTGCTTATAGTTTTCAATGCAAATCCCAGCTTATTTCACCATCAGCCTGTCATATATTCTTGGCTGTACCGGGAAGTTTTCAAGTACTATTTAGCAGTGTAGCCTGTAACGGATCTGGAATAGAAAGAAACACGACACTAGTAGTATACAATATTAAGATGAGGACCATGAAATTGATCCTCGAAGTATAAGAAGCATGATGTGCATTGTGTGAAGCCTGTTTAGTATGAAGGGGAAGGTTGAATCGTTGTGTGATTAGTAATAACGCTCAAGTTTGAGCGGTGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGTTTTAACCATTCATCCACAAATTGGTCATCTTAGGAGTCTCTTTTGTCCATAACATTTAACTGATTGCTTTAACAATTCATTTTTTTTCTATAAATCCGTGAGATAACTAACCAATGAAGGATCGTGTTGTTGTCCATATTGTGGTGGCTGCTAACTGATTTATTAACCACTGCTAACTGGTACGTCTTATTCTTGGAAATTGACCTTTTTGAAGCAGAACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGACAAAGGTTTCTAATTTCCATGCTAACTTGATTTCTTATTAAGTGTTTTAACTTCAATCTCCACTTGTCTCGTGACAGGTAGGTGAA</genome_strand>
        <mrna_strand>TTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGACAAAGGTTTCTAATTTCCATGCTAACTTGATTTCTTATTAAGTGTTTTAACTTCAATCTCCACTTGTCTCGTGACAGGTAGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307688" ref_strand="+" ref_description="SGN-E307688 [cLEY-16-E3]">
      <seq>tttttggaaagtgaaaagtaggtgaatctggcagtcatcggattctgtcgccgccggtgaagatgtcttccggaagatacatggcctactcaccatctccgtctgctcctcagtctcctcatatcgccggacttcgctctgcttcctctgccatcgccgagcaagagaagtatctctcagagttacttgcagaacgccacaaactcggcccatttgtgcccgtccttcctcattgctatcgattgctgaatcaggaacttttgcgtgtaactacactgttggggaatgcatcagtgttagatcaaaatgggcttgaacatgctagccccctggcttcaggaggaatgttttcaaatggaggagctaatgtggacagatgggcatcaccatttcaatcagaagtatggatactaactattaacataacctcttttagatctgattttatatgtttgaaaagcttttctgacaaaggtttctaatttccatgctaacttgatttcttattaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="129428" stop="125007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129128" g_stop="128960" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128959" i_stop="127564" i_length="1396">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127563" g_stop="127478" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="255" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127477" i_stop="125563" i_length="1915">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125562" g_stop="125307" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="511" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E307688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129128" e_stop="128960"/>
          <exon e_start="127563" e_stop="127478"/>
          <exon e_start="125562" e_stop="125307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAAGTGCGTTTTTCCTTTTTCTCTAACAACTTTGATTTTTTTGTTTGAAGTCTTCGTCTTTGTTGATTCAGTGGATCGTGCTGAAATTGGCTAAGCATATGTCCGATCTTCAGCTTTTTTGTTCCTTAATTTGTTGCTTTAATTTTACTATGTGGTTGTGATTTGTGACTTGATTTTCATTTTTTGGTTCAACGATTTATAAGTTGATTTATCTGAAAAGATCTGGTTTAGCTTCTTACTTAGTTAAAAGCATCAGTTTAAGGTTCAATATACTTTAACGCAATTTCAAACAATCTGGATTGGTTCTATGAATTCCTTGGATACTTTGATCAGGTTTGTTCCTCCAAAAAGTTGGTTTCTTTGATCTTATCAGAAGTTGCTTGTTACTGTTTCTTCTTCTTCGGTTCATTTTGTCAATTCTAATACTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTATTTACTTCTATCAGATGTTGATTGTTGCTGTTTCTTTTTCCTTCGGATCATTTTTTCAATTCAAATACTTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTCTTTGCTTCTATCGAATGTTGATTTTTGCTGTTTCTTCTTCCTTTGGATCATTTTTTTAATTCAAATACTTTTTTGGGTTGGTTGCTCTCGAAAAGTTTGTTTCTTTGCTTCTATCAGATGTTGATTGTTGCTGTTTCTTCTTCATTCGGTTCATTTTTTCAATTCAAATACTTTTTTGGGTTGGTTGCGTCGAGAAGTTTGTATCTTTGCTTCTATCAGATGTTGATTGTTATTATTTTTTCCCCTTCATTCAGAGAATTTGGTCCAATCTTCTCATAAGAAATTAAGAGAGGTGCAATTGTAAAGAAAAGATTCACTTTCTTGCTTGAATTACTCGGGCATTTATAACCCAAGAAGACTCTAGCACTTCGGCCTTGCAATAGCATTTTTTGTATGATCCCTTTTTCCCTACTTTGCTGATTGATAGAGTGGATCCGGGATTTTGAGTTGGCGGGTGTGGAGTACCACTGCACCCACTACTACTTTGTGGTGGTCGATGCAACTTTTGGTAAATGATTCAATTTGCTGCAGCCACTGACCAAATACTGCAACCCTGTCCTTCCGATTTGCATTTTGTTCCTATCTTAAGTGAACTTGTCTGCTTATTTTTGCTTATTCTAGTGCATCTTATGTGATTGACCAAATAGGAGATCTCGCTGCTCTATGTGCATTGTTTTTTCTCGATCTTCAGAAGATTGACAATAGCACAAACTAAATTAATTGGACTATCAAACTTGGAACAACCATCTTTTAAAGAGATACTGATGGTTTTCTTCTTATGTGTACCTATACCATAATTTGTTGCGAGTATTTAATTTGTCAATGTGTGTTAACAGGTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGGGTGAGTAGGAAGTTGAATTTTGATTAGTTCAGCCACTTGTGCTTCTGATATCAAAAAGTTTGTTTTATTGCTCAACCTGAGAGAAATCAAAGATTAGAGAATGAGGTGAAAAATATTTTAAGTTGATGAGTACATTCTTTTCATCTGAACAAAGATGATAAATCCATTGTATACGTCTGTTTTTGCTAATTGGGTGGAAGTTTAGGTCAAGTTTGGATCTTCTATGTTAAGTCAGTCAGCACTTTTTTCTGGACGACTCCCAACACTTTTTGTATATTCCATGATTGTCTTTTTGTTATTCATGTTTAACTAGATATTTGTCCCATAAAACGGGTATTAGTATCTCTAATTTCCTCCTCCTATGCAGTTTCTAAATAAAAATAAACAATTCCTTCTTCTATGGTCAGCTGTGGTCCGCTTACCGAGTGTATAGACCTACATGTCGTAATAGGTACCAAGGGAATTACATTTTACTTAACTGGGAAGCTTGTCACAAATTTGTTTATAAATAATGTTGTAACCACCCCCTGGCAAGAAAGAGAAGAGGTATAGAGAGTCATGGTATTGAATCCATGTTTATTTCCTATATGTTGGAAATAAACACTCCATTGTCCCATTCCAGTTCAAAGATAAAAAAGAACTTCACTATCCTTTTGTTACACCCTCCCACCCCCACCCCCCAAAGTATCCTATAGGTTTTTTCTTCACATTTATAATATGCTTCACTGACAATTTAAACTGTGATACCACACATATTATTTGTGAGCCTCTAAGTTTTAGATGGAAAGTGTTATTAAAATCATCTTTTGGCCAGATTGTGGGAAATTTGCTTATAGTTTTCAATGCAAATCCCAGCTTATTTCACCATCAGCCTGTCATATATTCTTGGCTGTACCGGGAAGTTTTCAAGTACTATTTAGCAGTGTAGCCTGTAACGGATCTGGAATAGAAAGAAACACGACACTAGTAGTATACAATATTAAGATGAGGACCATGAAATTGATCCTCGAAGTATAAGAAGCATGATGTGCATTGTGTGAAGCCTGTTTAGTATGAAGGGGAAGGTTGAATCGTTGTGTGATTAGTAATAACGCTCAAGTTTGAGCGGTGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGTTTTAACCATTCATCCACAAATTGGTCATCTTAGGAGTCTCTTTTGTCCATAACATTTAACTGATTGCTTTAACAATTCATTTTTTTTCTATAAATCCGTGAGATAACTAACCAATGAAGGATCGTGTTGTTGTCCATATTGTGGTGGCTGCTAACTGATTTATTAACCACTGCTAACTGGTACGTCTTATTCTTGGAAATTGACCTTTTTGAAGCAGAACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGACAAAGGTTTCTAATTTCCATGCTAACTTGATTTCTTATTAAG</genome_strand>
        <mrna_strand>TTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGACAAAGGTTTCTAATTTCCATGCTAACTTGATTTCTTATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323339" ref_strand="+" ref_description="SGN-E323339 [cTOC-10-I15]">
      <seq>ctttttggaaagtgaaaagtaggtgaatctggcagtcggcggattctgtcgccgccggtgaagatgtcttccggaagatacatggcctactcaccatctccgtctgctcctcagtctcctcatatcgccggacttcgctctgcttcctctgccatcgccgagcaagagaagtatctctcagagttacttgcagaacgccacaaactcggcccatttgtgcccgtccttcctcattgctatcgattgctgaatcaggaacttttgcgtgtaactacactgttggggaatgcatcagtgttagatcaaaatgggcttgaacatgctagccccctggcttcaggaggaatgttttcaaatggaggagctaatgtggacagatgggcatcaccatttcaatcagaagtatggatactaactattaacataacctcttttagatctgattttatatgtttgaaaagcttttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="129429" stop="125049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129129" g_stop="128960" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128959" i_stop="127564" i_length="1396">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127563" g_stop="127478" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="256" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127477" i_stop="125563" i_length="1915">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125562" g_stop="125349" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="470" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E323339" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129129" e_stop="128960"/>
          <exon e_start="127563" e_stop="127478"/>
          <exon e_start="125562" e_stop="125349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAAGTGCGTTTTTCCTTTTTCTCTAACAACTTTGATTTTTTTGTTTGAAGTCTTCGTCTTTGTTGATTCAGTGGATCGTGCTGAAATTGGCTAAGCATATGTCCGATCTTCAGCTTTTTTGTTCCTTAATTTGTTGCTTTAATTTTACTATGTGGTTGTGATTTGTGACTTGATTTTCATTTTTTGGTTCAACGATTTATAAGTTGATTTATCTGAAAAGATCTGGTTTAGCTTCTTACTTAGTTAAAAGCATCAGTTTAAGGTTCAATATACTTTAACGCAATTTCAAACAATCTGGATTGGTTCTATGAATTCCTTGGATACTTTGATCAGGTTTGTTCCTCCAAAAAGTTGGTTTCTTTGATCTTATCAGAAGTTGCTTGTTACTGTTTCTTCTTCTTCGGTTCATTTTGTCAATTCTAATACTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTATTTACTTCTATCAGATGTTGATTGTTGCTGTTTCTTTTTCCTTCGGATCATTTTTTCAATTCAAATACTTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTCTTTGCTTCTATCGAATGTTGATTTTTGCTGTTTCTTCTTCCTTTGGATCATTTTTTTAATTCAAATACTTTTTTGGGTTGGTTGCTCTCGAAAAGTTTGTTTCTTTGCTTCTATCAGATGTTGATTGTTGCTGTTTCTTCTTCATTCGGTTCATTTTTTCAATTCAAATACTTTTTTGGGTTGGTTGCGTCGAGAAGTTTGTATCTTTGCTTCTATCAGATGTTGATTGTTATTATTTTTTCCCCTTCATTCAGAGAATTTGGTCCAATCTTCTCATAAGAAATTAAGAGAGGTGCAATTGTAAAGAAAAGATTCACTTTCTTGCTTGAATTACTCGGGCATTTATAACCCAAGAAGACTCTAGCACTTCGGCCTTGCAATAGCATTTTTTGTATGATCCCTTTTTCCCTACTTTGCTGATTGATAGAGTGGATCCGGGATTTTGAGTTGGCGGGTGTGGAGTACCACTGCACCCACTACTACTTTGTGGTGGTCGATGCAACTTTTGGTAAATGATTCAATTTGCTGCAGCCACTGACCAAATACTGCAACCCTGTCCTTCCGATTTGCATTTTGTTCCTATCTTAAGTGAACTTGTCTGCTTATTTTTGCTTATTCTAGTGCATCTTATGTGATTGACCAAATAGGAGATCTCGCTGCTCTATGTGCATTGTTTTTTCTCGATCTTCAGAAGATTGACAATAGCACAAACTAAATTAATTGGACTATCAAACTTGGAACAACCATCTTTTAAAGAGATACTGATGGTTTTCTTCTTATGTGTACCTATACCATAATTTGTTGCGAGTATTTAATTTGTCAATGTGTGTTAACAGGTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGGGTGAGTAGGAAGTTGAATTTTGATTAGTTCAGCCACTTGTGCTTCTGATATCAAAAAGTTTGTTTTATTGCTCAACCTGAGAGAAATCAAAGATTAGAGAATGAGGTGAAAAATATTTTAAGTTGATGAGTACATTCTTTTCATCTGAACAAAGATGATAAATCCATTGTATACGTCTGTTTTTGCTAATTGGGTGGAAGTTTAGGTCAAGTTTGGATCTTCTATGTTAAGTCAGTCAGCACTTTTTTCTGGACGACTCCCAACACTTTTTGTATATTCCATGATTGTCTTTTTGTTATTCATGTTTAACTAGATATTTGTCCCATAAAACGGGTATTAGTATCTCTAATTTCCTCCTCCTATGCAGTTTCTAAATAAAAATAAACAATTCCTTCTTCTATGGTCAGCTGTGGTCCGCTTACCGAGTGTATAGACCTACATGTCGTAATAGGTACCAAGGGAATTACATTTTACTTAACTGGGAAGCTTGTCACAAATTTGTTTATAAATAATGTTGTAACCACCCCCTGGCAAGAAAGAGAAGAGGTATAGAGAGTCATGGTATTGAATCCATGTTTATTTCCTATATGTTGGAAATAAACACTCCATTGTCCCATTCCAGTTCAAAGATAAAAAAGAACTTCACTATCCTTTTGTTACACCCTCCCACCCCCACCCCCCAAAGTATCCTATAGGTTTTTTCTTCACATTTATAATATGCTTCACTGACAATTTAAACTGTGATACCACACATATTATTTGTGAGCCTCTAAGTTTTAGATGGAAAGTGTTATTAAAATCATCTTTTGGCCAGATTGTGGGAAATTTGCTTATAGTTTTCAATGCAAATCCCAGCTTATTTCACCATCAGCCTGTCATATATTCTTGGCTGTACCGGGAAGTTTTCAAGTACTATTTAGCAGTGTAGCCTGTAACGGATCTGGAATAGAAAGAAACACGACACTAGTAGTATACAATATTAAGATGAGGACCATGAAATTGATCCTCGAAGTATAAGAAGCATGATGTGCATTGTGTGAAGCCTGTTTAGTATGAAGGGGAAGGTTGAATCGTTGTGTGATTAGTAATAACGCTCAAGTTTGAGCGGTGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGTTTTAACCATTCATCCACAAATTGGTCATCTTAGGAGTCTCTTTTGTCCATAACATTTAACTGATTGCTTTAACAATTCATTTTTTTTCTATAAATCCGTGAGATAACTAACCAATGAAGGATCGTGTTGTTGTCCATATTGTGGTGGCTGCTAACTGATTTATTAACCACTGCTAACTGGTACGTCTTATTCTTGGAAATTGACCTTTTTGAAGCAGAACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGA</genome_strand>
        <mrna_strand>CTTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCGGCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337965" ref_strand="+" ref_description="SGN-E337965 [cTOE-14-G7]">
      <seq>tcggattctgtcgccgccggtgaagatgtcttccggaagatacatggcctactcaccatctccgtctgctcctcagtctcctcatatcgccggacttcgctctgcttcctctgccatcgccgagcaagagaagtatctctcagagttacttgcagaacgccacaaactcggcccatttgtgcccgtccttcctcattgctatcgattgctgaatcaggaacttttgcgtgtaactacactgttggggaatgcatcagtgttagatcaaaatgggcttgaacatgctagccccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="129391" stop="125187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129091" g_stop="128960" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128959" i_stop="127564" i_length="1396">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127563" g_stop="127478" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="218" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127477" i_stop="125563" i_length="1915">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125562" g_stop="125487" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="294" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E337965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129091" e_stop="128960"/>
          <exon e_start="127563" e_stop="127478"/>
          <exon e_start="125562" e_stop="125487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAAGTGCGTTTTTCCTTTTTCTCTAACAACTTTGATTTTTTTGTTTGAAGTCTTCGTCTTTGTTGATTCAGTGGATCGTGCTGAAATTGGCTAAGCATATGTCCGATCTTCAGCTTTTTTGTTCCTTAATTTGTTGCTTTAATTTTACTATGTGGTTGTGATTTGTGACTTGATTTTCATTTTTTGGTTCAACGATTTATAAGTTGATTTATCTGAAAAGATCTGGTTTAGCTTCTTACTTAGTTAAAAGCATCAGTTTAAGGTTCAATATACTTTAACGCAATTTCAAACAATCTGGATTGGTTCTATGAATTCCTTGGATACTTTGATCAGGTTTGTTCCTCCAAAAAGTTGGTTTCTTTGATCTTATCAGAAGTTGCTTGTTACTGTTTCTTCTTCTTCGGTTCATTTTGTCAATTCTAATACTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTATTTACTTCTATCAGATGTTGATTGTTGCTGTTTCTTTTTCCTTCGGATCATTTTTTCAATTCAAATACTTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTCTTTGCTTCTATCGAATGTTGATTTTTGCTGTTTCTTCTTCCTTTGGATCATTTTTTTAATTCAAATACTTTTTTGGGTTGGTTGCTCTCGAAAAGTTTGTTTCTTTGCTTCTATCAGATGTTGATTGTTGCTGTTTCTTCTTCATTCGGTTCATTTTTTCAATTCAAATACTTTTTTGGGTTGGTTGCGTCGAGAAGTTTGTATCTTTGCTTCTATCAGATGTTGATTGTTATTATTTTTTCCCCTTCATTCAGAGAATTTGGTCCAATCTTCTCATAAGAAATTAAGAGAGGTGCAATTGTAAAGAAAAGATTCACTTTCTTGCTTGAATTACTCGGGCATTTATAACCCAAGAAGACTCTAGCACTTCGGCCTTGCAATAGCATTTTTTGTATGATCCCTTTTTCCCTACTTTGCTGATTGATAGAGTGGATCCGGGATTTTGAGTTGGCGGGTGTGGAGTACCACTGCACCCACTACTACTTTGTGGTGGTCGATGCAACTTTTGGTAAATGATTCAATTTGCTGCAGCCACTGACCAAATACTGCAACCCTGTCCTTCCGATTTGCATTTTGTTCCTATCTTAAGTGAACTTGTCTGCTTATTTTTGCTTATTCTAGTGCATCTTATGTGATTGACCAAATAGGAGATCTCGCTGCTCTATGTGCATTGTTTTTTCTCGATCTTCAGAAGATTGACAATAGCACAAACTAAATTAATTGGACTATCAAACTTGGAACAACCATCTTTTAAAGAGATACTGATGGTTTTCTTCTTATGTGTACCTATACCATAATTTGTTGCGAGTATTTAATTTGTCAATGTGTGTTAACAGGTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGGGTGAGTAGGAAGTTGAATTTTGATTAGTTCAGCCACTTGTGCTTCTGATATCAAAAAGTTTGTTTTATTGCTCAACCTGAGAGAAATCAAAGATTAGAGAATGAGGTGAAAAATATTTTAAGTTGATGAGTACATTCTTTTCATCTGAACAAAGATGATAAATCCATTGTATACGTCTGTTTTTGCTAATTGGGTGGAAGTTTAGGTCAAGTTTGGATCTTCTATGTTAAGTCAGTCAGCACTTTTTTCTGGACGACTCCCAACACTTTTTGTATATTCCATGATTGTCTTTTTGTTATTCATGTTTAACTAGATATTTGTCCCATAAAACGGGTATTAGTATCTCTAATTTCCTCCTCCTATGCAGTTTCTAAATAAAAATAAACAATTCCTTCTTCTATGGTCAGCTGTGGTCCGCTTACCGAGTGTATAGACCTACATGTCGTAATAGGTACCAAGGGAATTACATTTTACTTAACTGGGAAGCTTGTCACAAATTTGTTTATAAATAATGTTGTAACCACCCCCTGGCAAGAAAGAGAAGAGGTATAGAGAGTCATGGTATTGAATCCATGTTTATTTCCTATATGTTGGAAATAAACACTCCATTGTCCCATTCCAGTTCAAAGATAAAAAAGAACTTCACTATCCTTTTGTTACACCCTCCCACCCCCACCCCCCAAAGTATCCTATAGGTTTTTTCTTCACATTTATAATATGCTTCACTGACAATTTAAACTGTGATACCACACATATTATTTGTGAGCCTCTAAGTTTTAGATGGAAAGTGTTATTAAAATCATCTTTTGGCCAGATTGTGGGAAATTTGCTTATAGTTTTCAATGCAAATCCCAGCTTATTTCACCATCAGCCTGTCATATATTCTTGGCTGTACCGGGAAGTTTTCAAGTACTATTTAGCAGTGTAGCCTGTAACGGATCTGGAATAGAAAGAAACACGACACTAGTAGTATACAATATTAAGATGAGGACCATGAAATTGATCCTCGAAGTATAAGAAGCATGATGTGCATTGTGTGAAGCCTGTTTAGTATGAAGGGGAAGGTTGAATCGTTGTGTGATTAGTAATAACGCTCAAGTTTGAGCGGTGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGTTTTAACCATTCATCCACAAATTGGTCATCTTAGGAGTCTCTTTTGTCCATAACATTTAACTGATTGCTTTAACAATTCATTTTTTTTCTATAAATCCGTGAGATAACTAACCAATGAAGGATCGTGTTGTTGTCCATATTGTGGTGGCTGCTAACTGATTTATTAACCACTGCTAACTGGTACGTCTTATTCTTGGAAATTGACCTTTTTGAAGCAGAACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCT</genome_strand>
        <mrna_strand>TCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549105" ref_strand="+" ref_description="SGN-E549105 [TUS-67-F14]">
      <seq>tggacctgcactctgggaatatctatatcatagtaagaggttatactgggcatgttatattcctcttgtaaatgtgtttggcaatggtggattgcatggccaaggacatgttagacctataaggaaattcttttcttttcatatatcttctaaatatatcttggaaatggcggaggatatgtccaaagacaagtttaaccttcaagcagtaattttttttttaattatgaccaacaacctaggagagtcctaacatttatgagattttttttactgttgtctgcctaaattcttctctccttcaattaggttagaccttctcctccttcctccgtttggttgtcatcttcgggacttcttttaataaaacggtgttgctcctagttgctgtctagcatcacaccaaaccacttaaatggcagggtttcttatttgttatagaaaatattgtatataccttgatattgaagtttggcatcttcaactgcaaaaaaaggtgccttaaagtgacagaattaatgcccctctaattgtaccgttgcgtcgtagattttctgccctatgcttcccatctctactgttccccgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="126669" stop="125480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126369" g_stop="125780" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E549105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126369" e_stop="125780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGT</genome_strand>
        <mrna_strand>TGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307865" ref_strand="+" ref_description="SGN-E307865 [cLEY-20-P24]">
      <seq>ggacctgcactctgggaatatctatatcatagtaagaggttatactgggcatgttatattcctcttgtaaatgtgtttggcaatggtggattgcatggccaaggacatgttagacctataaggaaattcttttcttttcatatatcttctaaatatatcttggaaatggcggaggatatgtccaaagacaagtttaaccttcaagcagtaattttttttttaattatgaccaacaacctaggagagtcctaacatttatgagattttttttactgttgtctgcctaaattcttctctccttcaattaggttagaccttctcctccttcctccgtttggttgtcatcttcgggacttcttttaataaaacggtgttgctcctagttgctgtcttgcatcacaccaaaccacttaaatggcagggtttcttatttgttatagaaaatattgtatataccttgatattgaagtttgccatcttcaactgcaaaaaaaggtgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="126668" stop="125567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126368" g_stop="125867" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E307865" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126368" e_stop="125867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTT</genome_strand>
        <mrna_strand>GGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTTGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGCCATCTTCAACTGCAAAAAAAGGTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355720" ref_strand="+" ref_description="SGN-E355720 [cLHT-1-P15]">
      <seq>aagcagagagtgatggcggaaacaatacccttcaaaaatcttcatagcagagagtaccagggacacaagaagaaggtgcattcggtggcatggaactgcagtggcacgaaattagcttcaggttctgtggatcaaacagctcgtatttggcaaattgagcctcatggtcatggaaaggtaaaagatgttgaattaaagggtcacaccgacagcgtggaccagttatgttgggatccaaaacatgcagaattgatagctacagcatctggtgacaagacagttcgattatgggatgcccgtagtgggaaatgctcacagcaagttgaactcagtggggaaaatatcaatatcacttacaagcctgatgggacacatatagctgttgggaacagggatgatgagctaacaatcttggatgttcgcaaatttaaacctattcataagcgcaagtttaattatgaggtaaatgagattgcatggaacacgggtggtgatatgttctttcttacaactggaaatggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="131332" stop="136283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131632" g_stop="131707" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131708" i_stop="131848" i_length="141">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131849" g_stop="131944" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="171" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131945" i_stop="134098" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134099" g_stop="134228" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="301" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134229" i_stop="134802" i_length="574">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134803" g_stop="134894" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="393" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134895" i_stop="135165" i_length="271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135166" g_stop="135234" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="462" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135235" i_stop="135924" i_length="690">
            <donor d_prob="0.137" d_score="0.96"/>
            <acceptor a_prob="0.822" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135925" g_stop="135982" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="520" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="135983" i_stop="136088" i_length="106">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="136089" g_stop="136093" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="525" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E355720" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131632" e_stop="131707"/>
          <exon e_start="131849" e_stop="131944"/>
          <exon e_start="134099" e_stop="134228"/>
          <exon e_start="134803" e_stop="134894"/>
          <exon e_start="135166" e_stop="135234"/>
          <exon e_start="135925" e_stop="135982"/>
          <exon e_start="136089" e_stop="136093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGAAGAGTAATGGCGGAAACAATACCCTTCAAAAATCTTCATAGCAGAGAGTACCAGGGACACAAGAAGAAGGTTTCTCTCTCTAAAACTATTCCTTCACTTCATTGTTAACAATACAACCCTAATTTTGCTTTTCCTTTTTATGAACTCTCTGATTAGATGAATTGACTATGTGATACTTTATCTTCTCTGTTTTTTTAAAAAAAATTAAAGGTGCATTCGGTGGCATGGAACTGCAGTGGCACGAAATTAGCTTCAGGTTCTGTGGATCAAACAGCTCGTATTTGGCAAATTGAGCCTCATGGTCATGTAAGCTTCATGAGCTCATCTTTTTTGTTTTCAGTTAAGTTTTAATGCTGAAAAAAGGATAGCTTTTTGTTATTGCTCTGATTTTTAAATGTTCTACTGAAGTGGTGGGAAACTGGGTGTTGTAAATAAACTGAAAAAAGGATAGCTTTTTATGATATATGCATGAACTTAGGCACCTGAGATTTTCTCTAGAGTTAAGAAGCTGGTCTCTCACTTTAGTTGTTTCTGCCAAAGTCTAGTTCTATGTGGTATGAGTTAAGGAACCTATGATAGTAATGCCTGTTGCAGTTAGGTTTAAATTTTGTTGTTACTTATCAAAGGTGGGGTAAAGTAAGCGTAACCTCACTTGTGGGAGGTCATACGAATTCGATGTTATAGATACACAGAGAGGTTTGAATTGGGAGAATGGGTAAAAAGATGCAGAAATGCTCCAGAGTTGTACAGGATGGTAAAATATCGCATGTCCCAGCTCAACGCACTTGGTGTGGAGTTATAGAAAAGCTGGAAAGGTAGCAAAGGAACATTTGGGATGCGGCGGATGGGACAAAGAAGTTTCACCTAGTGGGACGGGAGACCGTGACATCTCCTAAACAGTGGTGAGGACTTGGGGTTAAAGACTTGAAGGTTTTTAACAAAGTCCTCTTGGATAAATGGCTTTGGAGATTCGAGATGGAGGAAGAAGCTTTATGGGAGGGGTGATAGCGGACAAATATGGAGTTATGGAAGGAAGATGGAGAACAAATGTGGTTACCTTCCGAGTTTGGCATGTAGAAGAATATAATGAAGGGGTGGGAAGCCTTTAACAAAAACATTTTCTTTTAAGTTTGGGGTTGGGAGGAGACTAGTTTTTGGGGGTCAAAAGTGGTGCAGTGATTTGGTTAAAGAATGATTTCTTGGTGTTGTATAGCATTTCTGGGCAAAGGGAGCTGTCTGTTCAGCAAATTAGGGGGTGGGACCTTCTGGGATTTCCGAAATTGGGAGATGACCGATCTTCAAAGCTTTCTAGTTTTATACCATAAGCAATGCAAACCAGTAGATAGACCTGATGCTTTGAGTTGGGAGTTGGTGAATAAAAAAGTGTTCTCTATTAAGTCCTATAAAAGCTTCCTGTTAGGGTGGAAGTTAGTTTTCTGTATGACTCGGTATGGACACCTAAGGTGCTGAAGAAGGTGTATTTCTTCTTGTGGTTAGCTACTAAAGGGGTGATATTGACGGTGAAGAATCTTAGGGAATGAAAGGTGGTGGGCATAAGTTGTTGTTTCTTGTGTCAAGAGGCAGGAGAGGACATGATCAATATTTTGCTACATTGCAAAACATCTCGAGGTTATGGTAGGATATCTTTAGATGGTTTGATATTTCTTGGGCAATCCCAAATGTCTGTTGAAGTGTTGATGTTCAGTTGGAAGAGTGGAGTTAGGATAAGAAGACACAAGGTGTGAATGTTACTCCTCTTGCAGTAATGTGGGTCATTTGGAAAGAGAGAAATAGGAGAGCTATTGAAAGGGTGGAGAATTGGAGATTAGCTTTGCTCAATTGAGGAGTAGTCTCCGATCCCTTATTTTCTTTTGGTGTAATTTTTGTTTGTATAGAGGATTGAGGTGTCTTTTGGAGAACCATGTTTGGTAGGTTTCTCCTTTTGTGGTATACTCCTTTTATATGACCAAGATAGCCTTGTTATTATCAATTAAATCTTTTACTTGGTCATAGACCAGATAAATTTTTACTTTGTTAGTAGATCGAGTGCTCCATAACTCTATATCATTTGTCATTTCTCTTTATCAAGGCTATAAACATACTTTTATCTTGTTTCATAGTCGCAAAAATCCCAAGTTCCTCAACTTTGGAATTTGCATGAAGATTGAATGATATTTTGCTTCTGTTGCTCTGTATCAATACTATAAATGTACTTTTATCTTGTTTCATAGTCACAGATCCCAAGTTCCTCAACTTTGGAACTTGCATGAAGATTGTAGTATATTTTGCCTTTGCTTGCAAAAACCTGAACAATTAATAGCTTGCCACCATAAAACTACACTAAAATGATTGCGCCCTATCTATGTTTTCAATATTCTAGTCTTTTCTCATTCTTGAGAGGTGGAGTATAGAACCTCTTATGTCTGCATACACTCCAAGTCTCTGATAGCTCTTTTGCAGGGAAAGGTAAAAGATGTTGAATTAAAGGGTCACACCGACAGTGTGGACCAGTTATGTTGGGATCCAAAACATGCAGAATTGATAGCTACAGCATCTGGTGACAAGACAGTTCGATTATGGGATGCCCGTAGTAAGTTTATATTATTTTGCACCAGCAATAAGCTGCCAAAGTACTGTATGAAATAATGAGTTGGAATTTAAAGAATGTAATGCTATAAGAGCCTATGTCTATTGGTTACTTGAGGACTTGCACTATATTTATTCCCATAAAGTAATCATCCGAGAACAATATTACTCCTGTTTCAAAAATAATTGGAGGGGTCTAGCGTAAGTGGGTCAAACCTGTTAATTTCCGGTCTCAATTCATACATCAGTTTCTTATGTCTAGAACAATCTTATATAGTTAGAAACTGGAAAAAAGAAAACTATAAATTACACATTCTAATATGAAAATATTTTTGGTCAAAGAAAAGGTTATTTGACTGCTTAGAAGTATGTCATGTAAAGTGGAACCCAGGGGGGTTGGGTATGAGTTAGGTAACTCTACATGCACTTTCTTCTTTATAACTACTAATCAAAAACTCTACGTACACTTTCACAGCCTAGTTTCCCGTCAATTTCCAGGAAGTTGAAGATATTCATATGTTTTTATTTATTGGTCAGGGTGTTGCAGATGCTAAAACATTTTGGTCTCCATTTGGCAGGTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGGGTACTCATTATTTCTGTCATTTATTAATTCCTAAAATAAGCACTTCTATATTCTATTATCTTAGCTGCTTATAGATATGTATGTAGTCAAAATGAGTGCAGACAAAAACAGAAATGTATCTTAGCTTCATCTCTTTCTATTGCATGTATTTTCTATCATTCATATTTATGATGGTGAGTTTTATTGGTGATATTCTGTGGAGTTCCGTACTATCTGCTTATCATGGAGATTAATTTGGTGCATATTCTTATTCAGTTTTTTTATGGTACAGGATGATGAGCTAACAATCTTGGATGTTCGCAAGTTTAAGCCTATTCATAAGCGCAAGTTTAATTATGAGGTAGTCTCTTCCCCAGCTAAGTTTACGGTGATTCATAAGCCCATGTAGTAGTTATCAAAAGTTATGTAAACTTGACTTGTGCTGTACTGGGTTTAAGCCTACTGCATTTGGTCCGTCTCTTTCTCTTACTGCTGGCCCTTGCTTTTGTGATGCTAGTGTTCCAATGTGAATCAAGTTTCTCAGATGTGTTGCTGCAAGTTTTGACCTTTATCTGTTGGACATTCTGAGAAAGGACTTGAAATCACAGAACACCAGTTCTTCCTCTTGGCTTGATCTTTCTTCCCTCCAAGGGTGTAGAGACAATTACATGTTAATGCAGAAAATTCATGTGTAATGCATATATTTCTCCTAACTTGATTTTCTTGTGGTATGAGTAAATAACCATTTCCTCTTAAACTTAGAGATGCTCTTGAAGTATGGGTGAATGCTTCTGCTTCTCAGGACAAGTCTTTAACTCTAATTTGCCAAAGCTCTTCATATCTATTCAATTCATCCGTATTCTTGATCGTGCATGTAACCGGCCTCTTGTTTCTGGAATTAGTTGCAAAGAGTTCACCTGTTAAAGAAAAGTAATTAGTTGCTCAATGCATTGAGTCATATTCCTACTGGGGCATTCAGCATGATGGGTTCCATACTGTTAACACTTTTGAACTCTCCCAAGTTCCCATGGTTACACTTTTGCTTCATCAGGTAAATGAGATTGCATGGAACACGGGTGGCGATATGTTCTTTCTTACAACTGGAAATGGTGAGTACAAATTAGTGAGTTGGCTTTGCTGGCATTCAGTAAGAAAAGGCTTGAATTTCCAATATGAACTTTTCTCAGTGTCAAAGTTTTCGTGTTTGTCATATAGGAACT</genome_strand>
        <mrna_strand>AAGCAG-AGAGTGATGGCGGAAACAATACCCTTCAAAAATCTTCATAGCAGAGAGTACCAGGGACACAAGAAGAAG.............................................................................................................................................GTGCATTCGGTGGCATGGAACTGCAGTGGCACGAAATTAGCTTCAGGTTCTGTGGATCAAACAGCTCGTATTTGGCAAATTGAGCCTCATGGTCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGGTAAAAGATGTTGAATTAAAGGGTCACACCGACAGCGTGGACCAGTTATGTTGGGATCCAAAACATGCAGAATTGATAGCTACAGCATCTGGTGACAAGACAGTTCGATTATGGGATGCCCGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGG...............................................................................................................................................................................................................................................................................GATGATGAGCTAACAATCTTGGATGTTCGCAAATTTAAACCTATTCATAAGCGCAAGTTTAATTATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGAGATTGCATGGAACACGGGTGGTGATATGTTCTTTCTTACAACTGGAAATG..........................................................................................................GAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322791" ref_strand="+" ref_description="SGN-E322791 [cTOB-30-M3]">
      <seq>gagtaatggcggaaacaatacccttcaaaaatcttcatagcagagagtaccagggacacaagaagaaggtgcattcggtggcatggaactgcagtggcacgaaattagcttcaggttctgtggatcaaacagctcgtatttggcaaattgagcctcatggtcatggaaaggtaaaagatgttgaattaaagggtcacaccgacagtgtggaccagttatgttgggatccaaaacatgcagaattgatagctacagcatctggtgacaagacagttcgattatgggatgcccgtagtgggaaatgctcacagcaagttgaactcagtggggaaaatatcaatatcacttacaagcctgatgggacacatatagctgttgggaacagggatgatgagctaacaatcttggatgttcgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="131340" stop="135498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131640" g_stop="131707" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131708" i_stop="131848" i_length="141">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131849" g_stop="131944" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="164" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131945" i_stop="134098" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134099" g_stop="134228" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="294" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134229" i_stop="134802" i_length="574">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134803" g_stop="134894" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="386" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134895" i_stop="135165" i_length="271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135166" g_stop="135198" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="419" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E322791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131640" e_stop="131707"/>
          <exon e_start="131849" e_stop="131944"/>
          <exon e_start="134099" e_stop="134228"/>
          <exon e_start="134803" e_stop="134894"/>
          <exon e_start="135166" e_stop="135198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAATGGCGGAAACAATACCCTTCAAAAATCTTCATAGCAGAGAGTACCAGGGACACAAGAAGAAGGTTTCTCTCTCTAAAACTATTCCTTCACTTCATTGTTAACAATACAACCCTAATTTTGCTTTTCCTTTTTATGAACTCTCTGATTAGATGAATTGACTATGTGATACTTTATCTTCTCTGTTTTTTTAAAAAAAATTAAAGGTGCATTCGGTGGCATGGAACTGCAGTGGCACGAAATTAGCTTCAGGTTCTGTGGATCAAACAGCTCGTATTTGGCAAATTGAGCCTCATGGTCATGTAAGCTTCATGAGCTCATCTTTTTTGTTTTCAGTTAAGTTTTAATGCTGAAAAAAGGATAGCTTTTTGTTATTGCTCTGATTTTTAAATGTTCTACTGAAGTGGTGGGAAACTGGGTGTTGTAAATAAACTGAAAAAAGGATAGCTTTTTATGATATATGCATGAACTTAGGCACCTGAGATTTTCTCTAGAGTTAAGAAGCTGGTCTCTCACTTTAGTTGTTTCTGCCAAAGTCTAGTTCTATGTGGTATGAGTTAAGGAACCTATGATAGTAATGCCTGTTGCAGTTAGGTTTAAATTTTGTTGTTACTTATCAAAGGTGGGGTAAAGTAAGCGTAACCTCACTTGTGGGAGGTCATACGAATTCGATGTTATAGATACACAGAGAGGTTTGAATTGGGAGAATGGGTAAAAAGATGCAGAAATGCTCCAGAGTTGTACAGGATGGTAAAATATCGCATGTCCCAGCTCAACGCACTTGGTGTGGAGTTATAGAAAAGCTGGAAAGGTAGCAAAGGAACATTTGGGATGCGGCGGATGGGACAAAGAAGTTTCACCTAGTGGGACGGGAGACCGTGACATCTCCTAAACAGTGGTGAGGACTTGGGGTTAAAGACTTGAAGGTTTTTAACAAAGTCCTCTTGGATAAATGGCTTTGGAGATTCGAGATGGAGGAAGAAGCTTTATGGGAGGGGTGATAGCGGACAAATATGGAGTTATGGAAGGAAGATGGAGAACAAATGTGGTTACCTTCCGAGTTTGGCATGTAGAAGAATATAATGAAGGGGTGGGAAGCCTTTAACAAAAACATTTTCTTTTAAGTTTGGGGTTGGGAGGAGACTAGTTTTTGGGGGTCAAAAGTGGTGCAGTGATTTGGTTAAAGAATGATTTCTTGGTGTTGTATAGCATTTCTGGGCAAAGGGAGCTGTCTGTTCAGCAAATTAGGGGGTGGGACCTTCTGGGATTTCCGAAATTGGGAGATGACCGATCTTCAAAGCTTTCTAGTTTTATACCATAAGCAATGCAAACCAGTAGATAGACCTGATGCTTTGAGTTGGGAGTTGGTGAATAAAAAAGTGTTCTCTATTAAGTCCTATAAAAGCTTCCTGTTAGGGTGGAAGTTAGTTTTCTGTATGACTCGGTATGGACACCTAAGGTGCTGAAGAAGGTGTATTTCTTCTTGTGGTTAGCTACTAAAGGGGTGATATTGACGGTGAAGAATCTTAGGGAATGAAAGGTGGTGGGCATAAGTTGTTGTTTCTTGTGTCAAGAGGCAGGAGAGGACATGATCAATATTTTGCTACATTGCAAAACATCTCGAGGTTATGGTAGGATATCTTTAGATGGTTTGATATTTCTTGGGCAATCCCAAATGTCTGTTGAAGTGTTGATGTTCAGTTGGAAGAGTGGAGTTAGGATAAGAAGACACAAGGTGTGAATGTTACTCCTCTTGCAGTAATGTGGGTCATTTGGAAAGAGAGAAATAGGAGAGCTATTGAAAGGGTGGAGAATTGGAGATTAGCTTTGCTCAATTGAGGAGTAGTCTCCGATCCCTTATTTTCTTTTGGTGTAATTTTTGTTTGTATAGAGGATTGAGGTGTCTTTTGGAGAACCATGTTTGGTAGGTTTCTCCTTTTGTGGTATACTCCTTTTATATGACCAAGATAGCCTTGTTATTATCAATTAAATCTTTTACTTGGTCATAGACCAGATAAATTTTTACTTTGTTAGTAGATCGAGTGCTCCATAACTCTATATCATTTGTCATTTCTCTTTATCAAGGCTATAAACATACTTTTATCTTGTTTCATAGTCGCAAAAATCCCAAGTTCCTCAACTTTGGAATTTGCATGAAGATTGAATGATATTTTGCTTCTGTTGCTCTGTATCAATACTATAAATGTACTTTTATCTTGTTTCATAGTCACAGATCCCAAGTTCCTCAACTTTGGAACTTGCATGAAGATTGTAGTATATTTTGCCTTTGCTTGCAAAAACCTGAACAATTAATAGCTTGCCACCATAAAACTACACTAAAATGATTGCGCCCTATCTATGTTTTCAATATTCTAGTCTTTTCTCATTCTTGAGAGGTGGAGTATAGAACCTCTTATGTCTGCATACACTCCAAGTCTCTGATAGCTCTTTTGCAGGGAAAGGTAAAAGATGTTGAATTAAAGGGTCACACCGACAGTGTGGACCAGTTATGTTGGGATCCAAAACATGCAGAATTGATAGCTACAGCATCTGGTGACAAGACAGTTCGATTATGGGATGCCCGTAGTAAGTTTATATTATTTTGCACCAGCAATAAGCTGCCAAAGTACTGTATGAAATAATGAGTTGGAATTTAAAGAATGTAATGCTATAAGAGCCTATGTCTATTGGTTACTTGAGGACTTGCACTATATTTATTCCCATAAAGTAATCATCCGAGAACAATATTACTCCTGTTTCAAAAATAATTGGAGGGGTCTAGCGTAAGTGGGTCAAACCTGTTAATTTCCGGTCTCAATTCATACATCAGTTTCTTATGTCTAGAACAATCTTATATAGTTAGAAACTGGAAAAAAGAAAACTATAAATTACACATTCTAATATGAAAATATTTTTGGTCAAAGAAAAGGTTATTTGACTGCTTAGAAGTATGTCATGTAAAGTGGAACCCAGGGGGGTTGGGTATGAGTTAGGTAACTCTACATGCACTTTCTTCTTTATAACTACTAATCAAAAACTCTACGTACACTTTCACAGCCTAGTTTCCCGTCAATTTCCAGGAAGTTGAAGATATTCATATGTTTTTATTTATTGGTCAGGGTGTTGCAGATGCTAAAACATTTTGGTCTCCATTTGGCAGGTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGGGTACTCATTATTTCTGTCATTTATTAATTCCTAAAATAAGCACTTCTATATTCTATTATCTTAGCTGCTTATAGATATGTATGTAGTCAAAATGAGTGCAGACAAAAACAGAAATGTATCTTAGCTTCATCTCTTTCTATTGCATGTATTTTCTATCATTCATATTTATGATGGTGAGTTTTATTGGTGATATTCTGTGGAGTTCCGTACTATCTGCTTATCATGGAGATTAATTTGGTGCATATTCTTATTCAGTTTTTTTATGGTACAGGATGATGAGCTAACAATCTTGGATGTTCGCAAG</genome_strand>
        <mrna_strand>GAGTAATGGCGGAAACAATACCCTTCAAAAATCTTCATAGCAGAGAGTACCAGGGACACAAGAAGAAG.............................................................................................................................................GTGCATTCGGTGGCATGGAACTGCAGTGGCACGAAATTAGCTTCAGGTTCTGTGGATCAAACAGCTCGTATTTGGCAAATTGAGCCTCATGGTCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGGTAAAAGATGTTGAATTAAAGGGTCACACCGACAGTGTGGACCAGTTATGTTGGGATCCAAAACATGCAGAATTGATAGCTACAGCATCTGGTGACAAGACAGTTCGATTATGGGATGCCCGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGG...............................................................................................................................................................................................................................................................................GATGATGAGCTAACAATCTTGGATGTTCGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306975" ref_strand="+" ref_description="SGN-E306975 [cLEY-11-H9]">
      <seq>agtaatggcggaaacaatacccttcaaaaatcttcatagcagagagtaccagggacacaagaagaaggtgcattcggtggcatggaactgcagtggcacgaaattagcttcaggttctgtggatcaaacagctcgtatttggcaaattgagcctcatggtcatggaaaggtaaaagatgttgaattaaagggtcacaccgacagtgtggaccagttatgttgggatccaaaacatgcagaattgatagctacagcatctggtgacaagacagttcgattatgggatgcccgtagtgggaaatgctcacagcaagttgaactcagtggggaaaatatcaatatcacttacaagcctgatgggacacatatagctgttgggaacagggatgatgagctaacaatcttggatgttcgcaagtttaagcctattcataagcgcaagtttaattatgaggtaaatgagattgcatggaacacgggtggcgatatgttctttcttacaactggaaatggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="131341" stop="136283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131641" g_stop="131707" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131708" i_stop="131848" i_length="141">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131849" g_stop="131944" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="163" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131945" i_stop="134098" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134099" g_stop="134228" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="293" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134229" i_stop="134802" i_length="574">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134803" g_stop="134894" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="385" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134895" i_stop="135165" i_length="271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135166" g_stop="135234" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="454" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135235" i_stop="135924" i_length="690">
            <donor d_prob="0.137" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135925" g_stop="135982" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="512" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="135983" i_stop="136088" i_length="106">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="136089" g_stop="136093" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="517" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E306975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131641" e_stop="131707"/>
          <exon e_start="131849" e_stop="131944"/>
          <exon e_start="134099" e_stop="134228"/>
          <exon e_start="134803" e_stop="134894"/>
          <exon e_start="135166" e_stop="135234"/>
          <exon e_start="135925" e_stop="135982"/>
          <exon e_start="136089" e_stop="136093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGGCGGAAACAATACCCTTCAAAAATCTTCATAGCAGAGAGTACCAGGGACACAAGAAGAAGGTTTCTCTCTCTAAAACTATTCCTTCACTTCATTGTTAACAATACAACCCTAATTTTGCTTTTCCTTTTTATGAACTCTCTGATTAGATGAATTGACTATGTGATACTTTATCTTCTCTGTTTTTTTAAAAAAAATTAAAGGTGCATTCGGTGGCATGGAACTGCAGTGGCACGAAATTAGCTTCAGGTTCTGTGGATCAAACAGCTCGTATTTGGCAAATTGAGCCTCATGGTCATGTAAGCTTCATGAGCTCATCTTTTTTGTTTTCAGTTAAGTTTTAATGCTGAAAAAAGGATAGCTTTTTGTTATTGCTCTGATTTTTAAATGTTCTACTGAAGTGGTGGGAAACTGGGTGTTGTAAATAAACTGAAAAAAGGATAGCTTTTTATGATATATGCATGAACTTAGGCACCTGAGATTTTCTCTAGAGTTAAGAAGCTGGTCTCTCACTTTAGTTGTTTCTGCCAAAGTCTAGTTCTATGTGGTATGAGTTAAGGAACCTATGATAGTAATGCCTGTTGCAGTTAGGTTTAAATTTTGTTGTTACTTATCAAAGGTGGGGTAAAGTAAGCGTAACCTCACTTGTGGGAGGTCATACGAATTCGATGTTATAGATACACAGAGAGGTTTGAATTGGGAGAATGGGTAAAAAGATGCAGAAATGCTCCAGAGTTGTACAGGATGGTAAAATATCGCATGTCCCAGCTCAACGCACTTGGTGTGGAGTTATAGAAAAGCTGGAAAGGTAGCAAAGGAACATTTGGGATGCGGCGGATGGGACAAAGAAGTTTCACCTAGTGGGACGGGAGACCGTGACATCTCCTAAACAGTGGTGAGGACTTGGGGTTAAAGACTTGAAGGTTTTTAACAAAGTCCTCTTGGATAAATGGCTTTGGAGATTCGAGATGGAGGAAGAAGCTTTATGGGAGGGGTGATAGCGGACAAATATGGAGTTATGGAAGGAAGATGGAGAACAAATGTGGTTACCTTCCGAGTTTGGCATGTAGAAGAATATAATGAAGGGGTGGGAAGCCTTTAACAAAAACATTTTCTTTTAAGTTTGGGGTTGGGAGGAGACTAGTTTTTGGGGGTCAAAAGTGGTGCAGTGATTTGGTTAAAGAATGATTTCTTGGTGTTGTATAGCATTTCTGGGCAAAGGGAGCTGTCTGTTCAGCAAATTAGGGGGTGGGACCTTCTGGGATTTCCGAAATTGGGAGATGACCGATCTTCAAAGCTTTCTAGTTTTATACCATAAGCAATGCAAACCAGTAGATAGACCTGATGCTTTGAGTTGGGAGTTGGTGAATAAAAAAGTGTTCTCTATTAAGTCCTATAAAAGCTTCCTGTTAGGGTGGAAGTTAGTTTTCTGTATGACTCGGTATGGACACCTAAGGTGCTGAAGAAGGTGTATTTCTTCTTGTGGTTAGCTACTAAAGGGGTGATATTGACGGTGAAGAATCTTAGGGAATGAAAGGTGGTGGGCATAAGTTGTTGTTTCTTGTGTCAAGAGGCAGGAGAGGACATGATCAATATTTTGCTACATTGCAAAACATCTCGAGGTTATGGTAGGATATCTTTAGATGGTTTGATATTTCTTGGGCAATCCCAAATGTCTGTTGAAGTGTTGATGTTCAGTTGGAAGAGTGGAGTTAGGATAAGAAGACACAAGGTGTGAATGTTACTCCTCTTGCAGTAATGTGGGTCATTTGGAAAGAGAGAAATAGGAGAGCTATTGAAAGGGTGGAGAATTGGAGATTAGCTTTGCTCAATTGAGGAGTAGTCTCCGATCCCTTATTTTCTTTTGGTGTAATTTTTGTTTGTATAGAGGATTGAGGTGTCTTTTGGAGAACCATGTTTGGTAGGTTTCTCCTTTTGTGGTATACTCCTTTTATATGACCAAGATAGCCTTGTTATTATCAATTAAATCTTTTACTTGGTCATAGACCAGATAAATTTTTACTTTGTTAGTAGATCGAGTGCTCCATAACTCTATATCATTTGTCATTTCTCTTTATCAAGGCTATAAACATACTTTTATCTTGTTTCATAGTCGCAAAAATCCCAAGTTCCTCAACTTTGGAATTTGCATGAAGATTGAATGATATTTTGCTTCTGTTGCTCTGTATCAATACTATAAATGTACTTTTATCTTGTTTCATAGTCACAGATCCCAAGTTCCTCAACTTTGGAACTTGCATGAAGATTGTAGTATATTTTGCCTTTGCTTGCAAAAACCTGAACAATTAATAGCTTGCCACCATAAAACTACACTAAAATGATTGCGCCCTATCTATGTTTTCAATATTCTAGTCTTTTCTCATTCTTGAGAGGTGGAGTATAGAACCTCTTATGTCTGCATACACTCCAAGTCTCTGATAGCTCTTTTGCAGGGAAAGGTAAAAGATGTTGAATTAAAGGGTCACACCGACAGTGTGGACCAGTTATGTTGGGATCCAAAACATGCAGAATTGATAGCTACAGCATCTGGTGACAAGACAGTTCGATTATGGGATGCCCGTAGTAAGTTTATATTATTTTGCACCAGCAATAAGCTGCCAAAGTACTGTATGAAATAATGAGTTGGAATTTAAAGAATGTAATGCTATAAGAGCCTATGTCTATTGGTTACTTGAGGACTTGCACTATATTTATTCCCATAAAGTAATCATCCGAGAACAATATTACTCCTGTTTCAAAAATAATTGGAGGGGTCTAGCGTAAGTGGGTCAAACCTGTTAATTTCCGGTCTCAATTCATACATCAGTTTCTTATGTCTAGAACAATCTTATATAGTTAGAAACTGGAAAAAAGAAAACTATAAATTACACATTCTAATATGAAAATATTTTTGGTCAAAGAAAAGGTTATTTGACTGCTTAGAAGTATGTCATGTAAAGTGGAACCCAGGGGGGTTGGGTATGAGTTAGGTAACTCTACATGCACTTTCTTCTTTATAACTACTAATCAAAAACTCTACGTACACTTTCACAGCCTAGTTTCCCGTCAATTTCCAGGAAGTTGAAGATATTCATATGTTTTTATTTATTGGTCAGGGTGTTGCAGATGCTAAAACATTTTGGTCTCCATTTGGCAGGTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGGGTACTCATTATTTCTGTCATTTATTAATTCCTAAAATAAGCACTTCTATATTCTATTATCTTAGCTGCTTATAGATATGTATGTAGTCAAAATGAGTGCAGACAAAAACAGAAATGTATCTTAGCTTCATCTCTTTCTATTGCATGTATTTTCTATCATTCATATTTATGATGGTGAGTTTTATTGGTGATATTCTGTGGAGTTCCGTACTATCTGCTTATCATGGAGATTAATTTGGTGCATATTCTTATTCAGTTTTTTTATGGTACAGGATGATGAGCTAACAATCTTGGATGTTCGCAAGTTTAAGCCTATTCATAAGCGCAAGTTTAATTATGAGGTAGTCTCTTCCCCAGCTAAGTTTACGGTGATTCATAAGCCCATGTAGTAGTTATCAAAAGTTATGTAAACTTGACTTGTGCTGTACTGGGTTTAAGCCTACTGCATTTGGTCCGTCTCTTTCTCTTACTGCTGGCCCTTGCTTTTGTGATGCTAGTGTTCCAATGTGAATCAAGTTTCTCAGATGTGTTGCTGCAAGTTTTGACCTTTATCTGTTGGACATTCTGAGAAAGGACTTGAAATCACAGAACACCAGTTCTTCCTCTTGGCTTGATCTTTCTTCCCTCCAAGGGTGTAGAGACAATTACATGTTAATGCAGAAAATTCATGTGTAATGCATATATTTCTCCTAACTTGATTTTCTTGTGGTATGAGTAAATAACCATTTCCTCTTAAACTTAGAGATGCTCTTGAAGTATGGGTGAATGCTTCTGCTTCTCAGGACAAGTCTTTAACTCTAATTTGCCAAAGCTCTTCATATCTATTCAATTCATCCGTATTCTTGATCGTGCATGTAACCGGCCTCTTGTTTCTGGAATTAGTTGCAAAGAGTTCACCTGTTAAAGAAAAGTAATTAGTTGCTCAATGCATTGAGTCATATTCCTACTGGGGCATTCAGCATGATGGGTTCCATACTGTTAACACTTTTGAACTCTCCCAAGTTCCCATGGTTACACTTTTGCTTCATCAGGTAAATGAGATTGCATGGAACACGGGTGGCGATATGTTCTTTCTTACAACTGGAAATGGTGAGTACAAATTAGTGAGTTGGCTTTGCTGGCATTCAGTAAGAAAAGGCTTGAATTTCCAATATGAACTTTTCTCAGTGTCAAAGTTTTCGTGTTTGTCATATAGGAACT</genome_strand>
        <mrna_strand>AGTAATGGCGGAAACAATACCCTTCAAAAATCTTCATAGCAGAGAGTACCAGGGACACAAGAAGAAG.............................................................................................................................................GTGCATTCGGTGGCATGGAACTGCAGTGGCACGAAATTAGCTTCAGGTTCTGTGGATCAAACAGCTCGTATTTGGCAAATTGAGCCTCATGGTCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGGTAAAAGATGTTGAATTAAAGGGTCACACCGACAGTGTGGACCAGTTATGTTGGGATCCAAAACATGCAGAATTGATAGCTACAGCATCTGGTGACAAGACAGTTCGATTATGGGATGCCCGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGG...............................................................................................................................................................................................................................................................................GATGATGAGCTAACAATCTTGGATGTTCGCAAGTTTAAGCCTATTCATAAGCGCAAGTTTAATTATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGAGATTGCATGGAACACGGGTGGCGATATGTTCTTTCTTACAACTGGAAATG..........................................................................................................GAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337474" ref_strand="+" ref_description="SGN-E337474 [cTOE-11-D19]">
      <seq>gcggaaacaatacccttcaaaaatcttcatagcagagagtaccagggacacaagaagaaggtgcattcggtggcatggaactgcagtggcacgaaattagcttcaggttctgtggatcaaacagctcgtatttggcaaattgagcctcatggtcatggaaaggtaaaagatgttgaattaaagggtcacaccgacagtgtggaccagttatgttgggatccaaaacatgcagaattgatagctacagcatctggtgacaagacagttcgattatgggatgcccgtagtgggaaatgctcacagcaagttgaactcagtggggaaaatatcaatatcacttacaagcctgatgggacacatatagctgttgggaacagggatgatgagctaacaatcttggatgttcgcaagttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="131348" stop="135502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131648" g_stop="131707" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131708" i_stop="131848" i_length="141">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131849" g_stop="131944" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="156" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131945" i_stop="134098" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134099" g_stop="134228" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="286" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134229" i_stop="134802" i_length="574">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134803" g_stop="134894" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="378" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134895" i_stop="135165" i_length="271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135166" g_stop="135202" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="415" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E337474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131648" e_stop="131707"/>
          <exon e_start="131849" e_stop="131944"/>
          <exon e_start="134099" e_stop="134228"/>
          <exon e_start="134803" e_stop="134894"/>
          <exon e_start="135166" e_stop="135202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGAAACAATACCCTTCAAAAATCTTCATAGCAGAGAGTACCAGGGACACAAGAAGAAGGTTTCTCTCTCTAAAACTATTCCTTCACTTCATTGTTAACAATACAACCCTAATTTTGCTTTTCCTTTTTATGAACTCTCTGATTAGATGAATTGACTATGTGATACTTTATCTTCTCTGTTTTTTTAAAAAAAATTAAAGGTGCATTCGGTGGCATGGAACTGCAGTGGCACGAAATTAGCTTCAGGTTCTGTGGATCAAACAGCTCGTATTTGGCAAATTGAGCCTCATGGTCATGTAAGCTTCATGAGCTCATCTTTTTTGTTTTCAGTTAAGTTTTAATGCTGAAAAAAGGATAGCTTTTTGTTATTGCTCTGATTTTTAAATGTTCTACTGAAGTGGTGGGAAACTGGGTGTTGTAAATAAACTGAAAAAAGGATAGCTTTTTATGATATATGCATGAACTTAGGCACCTGAGATTTTCTCTAGAGTTAAGAAGCTGGTCTCTCACTTTAGTTGTTTCTGCCAAAGTCTAGTTCTATGTGGTATGAGTTAAGGAACCTATGATAGTAATGCCTGTTGCAGTTAGGTTTAAATTTTGTTGTTACTTATCAAAGGTGGGGTAAAGTAAGCGTAACCTCACTTGTGGGAGGTCATACGAATTCGATGTTATAGATACACAGAGAGGTTTGAATTGGGAGAATGGGTAAAAAGATGCAGAAATGCTCCAGAGTTGTACAGGATGGTAAAATATCGCATGTCCCAGCTCAACGCACTTGGTGTGGAGTTATAGAAAAGCTGGAAAGGTAGCAAAGGAACATTTGGGATGCGGCGGATGGGACAAAGAAGTTTCACCTAGTGGGACGGGAGACCGTGACATCTCCTAAACAGTGGTGAGGACTTGGGGTTAAAGACTTGAAGGTTTTTAACAAAGTCCTCTTGGATAAATGGCTTTGGAGATTCGAGATGGAGGAAGAAGCTTTATGGGAGGGGTGATAGCGGACAAATATGGAGTTATGGAAGGAAGATGGAGAACAAATGTGGTTACCTTCCGAGTTTGGCATGTAGAAGAATATAATGAAGGGGTGGGAAGCCTTTAACAAAAACATTTTCTTTTAAGTTTGGGGTTGGGAGGAGACTAGTTTTTGGGGGTCAAAAGTGGTGCAGTGATTTGGTTAAAGAATGATTTCTTGGTGTTGTATAGCATTTCTGGGCAAAGGGAGCTGTCTGTTCAGCAAATTAGGGGGTGGGACCTTCTGGGATTTCCGAAATTGGGAGATGACCGATCTTCAAAGCTTTCTAGTTTTATACCATAAGCAATGCAAACCAGTAGATAGACCTGATGCTTTGAGTTGGGAGTTGGTGAATAAAAAAGTGTTCTCTATTAAGTCCTATAAAAGCTTCCTGTTAGGGTGGAAGTTAGTTTTCTGTATGACTCGGTATGGACACCTAAGGTGCTGAAGAAGGTGTATTTCTTCTTGTGGTTAGCTACTAAAGGGGTGATATTGACGGTGAAGAATCTTAGGGAATGAAAGGTGGTGGGCATAAGTTGTTGTTTCTTGTGTCAAGAGGCAGGAGAGGACATGATCAATATTTTGCTACATTGCAAAACATCTCGAGGTTATGGTAGGATATCTTTAGATGGTTTGATATTTCTTGGGCAATCCCAAATGTCTGTTGAAGTGTTGATGTTCAGTTGGAAGAGTGGAGTTAGGATAAGAAGACACAAGGTGTGAATGTTACTCCTCTTGCAGTAATGTGGGTCATTTGGAAAGAGAGAAATAGGAGAGCTATTGAAAGGGTGGAGAATTGGAGATTAGCTTTGCTCAATTGAGGAGTAGTCTCCGATCCCTTATTTTCTTTTGGTGTAATTTTTGTTTGTATAGAGGATTGAGGTGTCTTTTGGAGAACCATGTTTGGTAGGTTTCTCCTTTTGTGGTATACTCCTTTTATATGACCAAGATAGCCTTGTTATTATCAATTAAATCTTTTACTTGGTCATAGACCAGATAAATTTTTACTTTGTTAGTAGATCGAGTGCTCCATAACTCTATATCATTTGTCATTTCTCTTTATCAAGGCTATAAACATACTTTTATCTTGTTTCATAGTCGCAAAAATCCCAAGTTCCTCAACTTTGGAATTTGCATGAAGATTGAATGATATTTTGCTTCTGTTGCTCTGTATCAATACTATAAATGTACTTTTATCTTGTTTCATAGTCACAGATCCCAAGTTCCTCAACTTTGGAACTTGCATGAAGATTGTAGTATATTTTGCCTTTGCTTGCAAAAACCTGAACAATTAATAGCTTGCCACCATAAAACTACACTAAAATGATTGCGCCCTATCTATGTTTTCAATATTCTAGTCTTTTCTCATTCTTGAGAGGTGGAGTATAGAACCTCTTATGTCTGCATACACTCCAAGTCTCTGATAGCTCTTTTGCAGGGAAAGGTAAAAGATGTTGAATTAAAGGGTCACACCGACAGTGTGGACCAGTTATGTTGGGATCCAAAACATGCAGAATTGATAGCTACAGCATCTGGTGACAAGACAGTTCGATTATGGGATGCCCGTAGTAAGTTTATATTATTTTGCACCAGCAATAAGCTGCCAAAGTACTGTATGAAATAATGAGTTGGAATTTAAAGAATGTAATGCTATAAGAGCCTATGTCTATTGGTTACTTGAGGACTTGCACTATATTTATTCCCATAAAGTAATCATCCGAGAACAATATTACTCCTGTTTCAAAAATAATTGGAGGGGTCTAGCGTAAGTGGGTCAAACCTGTTAATTTCCGGTCTCAATTCATACATCAGTTTCTTATGTCTAGAACAATCTTATATAGTTAGAAACTGGAAAAAAGAAAACTATAAATTACACATTCTAATATGAAAATATTTTTGGTCAAAGAAAAGGTTATTTGACTGCTTAGAAGTATGTCATGTAAAGTGGAACCCAGGGGGGTTGGGTATGAGTTAGGTAACTCTACATGCACTTTCTTCTTTATAACTACTAATCAAAAACTCTACGTACACTTTCACAGCCTAGTTTCCCGTCAATTTCCAGGAAGTTGAAGATATTCATATGTTTTTATTTATTGGTCAGGGTGTTGCAGATGCTAAAACATTTTGGTCTCCATTTGGCAGGTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGGGTACTCATTATTTCTGTCATTTATTAATTCCTAAAATAAGCACTTCTATATTCTATTATCTTAGCTGCTTATAGATATGTATGTAGTCAAAATGAGTGCAGACAAAAACAGAAATGTATCTTAGCTTCATCTCTTTCTATTGCATGTATTTTCTATCATTCATATTTATGATGGTGAGTTTTATTGGTGATATTCTGTGGAGTTCCGTACTATCTGCTTATCATGGAGATTAATTTGGTGCATATTCTTATTCAGTTTTTTTATGGTACAGGATGATGAGCTAACAATCTTGGATGTTCGCAAGTTTA</genome_strand>
        <mrna_strand>GCGGAAACAATACCCTTCAAAAATCTTCATAGCAGAGAGTACCAGGGACACAAGAAGAAG.............................................................................................................................................GTGCATTCGGTGGCATGGAACTGCAGTGGCACGAAATTAGCTTCAGGTTCTGTGGATCAAACAGCTCGTATTTGGCAAATTGAGCCTCATGGTCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGGTAAAAGATGTTGAATTAAAGGGTCACACCGACAGTGTGGACCAGTTATGTTGGGATCCAAAACATGCAGAATTGATAGCTACAGCATCTGGTGACAAGACAGTTCGATTATGGGATGCCCGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGG...............................................................................................................................................................................................................................................................................GATGATGAGCTAACAATCTTGGATGTTCGCAAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713687" ref_strand="+" ref_description="SGN-E713687 [FB09BD06]">
      <seq>gacagttcgattatgggatgcccgtagtgggaaatgctcacagcaagttgaactcagtggggaaaatatcaatatcacttacaagcctgatgggacacatatagctgttgggaacagggatgatgagctaacaatcttggatgttcgcaagtttaagcctattcataagcgcaagtttaattatgaggtaaatgagattgcatggaacacgggtggcgatatgttctttcttacaactggaaatggaactgtggaagtcttagcttatccgtctctacaagctgttaacacgcttaatgctcacactgctggttgttactgcattgcaattgatccactaggaagatattttgctgttggaagtgctgattcattggtcagcctttggagcatcaaggagatgctatgtcttcgaacatttacaaaacttgagtggccagttcggacaataagtttcaatcacacaggagactacattgcctctgctagtgaagatttgtttattgatattgctaatgtccaatctggacggtcagttcaccaaattccatgtcgtgctgccatgaacagtgttgaatggaatccaaaacacaacttgcttgcctttgccggggatgataagaacaaataccaggctgatgaaggtgtgtttcgcatatttggctttgagagcgcatagagccctgatgaaaggttataaaagaggcctgaaaaagatcttgtataatttatgatgaagaaagcaaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="133903" stop="137506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134203" g_stop="134228" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134229" i_stop="134802" i_length="574">
            <donor d_prob="0.918" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134803" g_stop="134894" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="118" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134895" i_stop="135165" i_length="271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135166" g_stop="135234" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="187" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135235" i_stop="135924" i_length="690">
            <donor d_prob="0.137" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135925" g_stop="135982" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="245" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135983" i_stop="136088" i_length="106">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="136089" g_stop="136188" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="345" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="136189" i_stop="136503" i_length="315">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="136504" g_stop="136590" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="432" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="136591" i_stop="136684" i_length="94">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="136685" g_stop="136763" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="511" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="136764" i_stop="136897" i_length="134">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="136898" g_stop="137030" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="644" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="137031" i_stop="137098" i_length="68">
            <donor d_prob="0.503" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="137099" g_stop="137206" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="752" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E713687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134203" e_stop="134228"/>
          <exon e_start="134803" e_stop="134894"/>
          <exon e_start="135166" e_stop="135234"/>
          <exon e_start="135925" e_stop="135982"/>
          <exon e_start="136089" e_stop="136188"/>
          <exon e_start="136504" e_stop="136590"/>
          <exon e_start="136685" e_stop="136763"/>
          <exon e_start="136898" e_stop="137030"/>
          <exon e_start="137099" e_stop="137206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTTCGATTATGGGATGCCCGTAGTAAGTTTATATTATTTTGCACCAGCAATAAGCTGCCAAAGTACTGTATGAAATAATGAGTTGGAATTTAAAGAATGTAATGCTATAAGAGCCTATGTCTATTGGTTACTTGAGGACTTGCACTATATTTATTCCCATAAAGTAATCATCCGAGAACAATATTACTCCTGTTTCAAAAATAATTGGAGGGGTCTAGCGTAAGTGGGTCAAACCTGTTAATTTCCGGTCTCAATTCATACATCAGTTTCTTATGTCTAGAACAATCTTATATAGTTAGAAACTGGAAAAAAGAAAACTATAAATTACACATTCTAATATGAAAATATTTTTGGTCAAAGAAAAGGTTATTTGACTGCTTAGAAGTATGTCATGTAAAGTGGAACCCAGGGGGGTTGGGTATGAGTTAGGTAACTCTACATGCACTTTCTTCTTTATAACTACTAATCAAAAACTCTACGTACACTTTCACAGCCTAGTTTCCCGTCAATTTCCAGGAAGTTGAAGATATTCATATGTTTTTATTTATTGGTCAGGGTGTTGCAGATGCTAAAACATTTTGGTCTCCATTTGGCAGGTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGGGTACTCATTATTTCTGTCATTTATTAATTCCTAAAATAAGCACTTCTATATTCTATTATCTTAGCTGCTTATAGATATGTATGTAGTCAAAATGAGTGCAGACAAAAACAGAAATGTATCTTAGCTTCATCTCTTTCTATTGCATGTATTTTCTATCATTCATATTTATGATGGTGAGTTTTATTGGTGATATTCTGTGGAGTTCCGTACTATCTGCTTATCATGGAGATTAATTTGGTGCATATTCTTATTCAGTTTTTTTATGGTACAGGATGATGAGCTAACAATCTTGGATGTTCGCAAGTTTAAGCCTATTCATAAGCGCAAGTTTAATTATGAGGTAGTCTCTTCCCCAGCTAAGTTTACGGTGATTCATAAGCCCATGTAGTAGTTATCAAAAGTTATGTAAACTTGACTTGTGCTGTACTGGGTTTAAGCCTACTGCATTTGGTCCGTCTCTTTCTCTTACTGCTGGCCCTTGCTTTTGTGATGCTAGTGTTCCAATGTGAATCAAGTTTCTCAGATGTGTTGCTGCAAGTTTTGACCTTTATCTGTTGGACATTCTGAGAAAGGACTTGAAATCACAGAACACCAGTTCTTCCTCTTGGCTTGATCTTTCTTCCCTCCAAGGGTGTAGAGACAATTACATGTTAATGCAGAAAATTCATGTGTAATGCATATATTTCTCCTAACTTGATTTTCTTGTGGTATGAGTAAATAACCATTTCCTCTTAAACTTAGAGATGCTCTTGAAGTATGGGTGAATGCTTCTGCTTCTCAGGACAAGTCTTTAACTCTAATTTGCCAAAGCTCTTCATATCTATTCAATTCATCCGTATTCTTGATCGTGCATGTAACCGGCCTCTTGTTTCTGGAATTAGTTGCAAAGAGTTCACCTGTTAAAGAAAAGTAATTAGTTGCTCAATGCATTGAGTCATATTCCTACTGGGGCATTCAGCATGATGGGTTCCATACTGTTAACACTTTTGAACTCTCCCAAGTTCCCATGGTTACACTTTTGCTTCATCAGGTAAATGAGATTGCATGGAACACGGGTGGCGATATGTTCTTTCTTACAACTGGAAATGGTGAGTACAAATTAGTGAGTTGGCTTTGCTGGCATTCAGTAAGAAAAGGCTTGAATTTCCAATATGAACTTTTCTCAGTGTCAAAGTTTTCGTGTTTGTCATATAGGAACTGTGGAAGTCTTAGCTTATCCGTCTCTACAAGCTGTTAACACGCTTAATGCTCACACTGCTGGTTGTTACTGCATTGCAATTGATCCACTAGGAAGGTGAGCTTGATATTTTGCTGCAAGTATAATTCCTTTGTGCTATGGTTTAAATGAGACTTACAGAGGCCTCAGACAGCTCAAGAATATGGACATTCCTTTCTAGTAATGGGAAAATTCTTTGGCACTAGTTCCAAGTAGCTAGTACCTTGTGGCACTATGATGTCAATAAGGCTTCTGGCACAGGACCATGCATATGGTCACTCTATGATGTCATTATGAGTTTTGTTGAAGGACCATTCATAGATTCTCTCAGACCATGAGTGGGGGTTTTGATCTGAACTAATTATACCTTATTTTGATTCAATATTACACAAGATATTTTGCTGTTGGAAGTGCTGATTCATTGGTCAGCCTTTGGAGCATCAAGGAGATGCTATGTCTTCGAACATTTACAAAACTTGAGTAAGTTCTCAAGTATGTTTTCGTCCATCTTATAATTTATACGAGTGTCCTGGGTTAGGTAGCTGATCTTTAATTTTTTCTTTTTGCTACTCAGGTGGCCAGTTCGGACAATAAGTTTCAATCACACAGGAGACTACATTGCCTCTGCTAGTGAAGATTTGTTTATTGATATTGTATGTTGTCAAGAACCTGTATACTCTTCTTCTACATAGAAAATCTCTTCAACCTTTCAATAACTTAGCCATTAGTCTCTTCTACATAGAAAATCTCTTTAACCTTTCGATAACTCAGCCATTATTTTGCACAGGCTAATGTCCAATCTGGACGGTCAGTTCACCAAATTCCATGTCGTGCTGCCATGAACAGTGTTGAATGGAATCCAAAACACAACTTGCTTGCCTTTGCCGGGGATGATAAGAACAAATACCAGGCTGATGAAGGTGTCTTTCTGACCTAAGAAAGAACTCTTTACGAGTTCCAAGGCCTAATATTTTTCTTTTCTATGTAGGTGTGTTTCGCATATTTGGCTTTGAGAGCGCATAGAGCCCTGATGAAAGGTTATAAAAGAGGCCTGAAAAAGATCTTGTATAATTTATGATGAAGAAAGCAAAATTTT</genome_strand>
        <mrna_strand>GACAGTTCGATTATGGGATGCCCGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGG...............................................................................................................................................................................................................................................................................GATGATGAGCTAACAATCTTGGATGTTCGCAAGTTTAAGCCTATTCATAAGCGCAAGTTTAATTATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGAGATTGCATGGAACACGGGTGGCGATATGTTCTTTCTTACAACTGGAAATG..........................................................................................................GAACTGTGGAAGTCTTAGCTTATCCGTCTCTACAAGCTGTTAACACGCTTAATGCTCACACTGCTGGTTGTTACTGCATTGCAATTGATCCACTAGGAAG...........................................................................................................................................................................................................................................................................................................................ATATTTTGCTGTTGGAAGTGCTGATTCATTGGTCAGCCTTTGGAGCATCAAGGAGATGCTATGTCTTCGAACATTTACAAAACTTGA..............................................................................................GTGGCCAGTTCGGACAATAAGTTTCAATCACACAGGAGACTACATTGCCTCTGCTAGTGAAGATTTGTTTATTGATATT......................................................................................................................................GCTAATGTCCAATCTGGACGGTCAGTTCACCAAATTCCATGTCGTGCTGCCATGAACAGTGTTGAATGGAATCCAAAACACAACTTGCTTGCCTTTGCCGGGGATGATAAGAACAAATACCAGGCTGATGAAG....................................................................GTGTGTTTCGCATATTTGGCTTTGAGAGCGCATAGAGCCCTGATGAAAGGTTATAAAAGAGGCCTGAAAAAGATCTTGTATAATTTATGATGAAGAAAGCAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693816" ref_strand="+" ref_description="SGN-E693816 [LH_Ea02E22](-)">
      <seq>gggaaaatatcaatatcacttacaagcctgatgggacacatatagctgttgggaacagggatgatgagctaacaatcttggatgttcgcaagtttaaacctattcataagcgcaagtttaattatgaggtaaatgagattgcatggaacacgggtggtgatatgttctttcttacaactggaaatggaactgtggaagtcttagcttatccgtctctacaagccgttaacacacttaatgctcacactgctggttgttactgcattgcaattgatccactaggaagatattttgctgttggaagtgctgattcattggtcagcctttggagcattaaggagatgctatgtcttcgaacatttacaaaacttgagtggccagttcggacaataagtttcaatcacacaggagactacgttgcctctgctagtgaagatttgtttattgatattgctaatgtccaaactggacggtcagtccaccaaattccatgtcgtgctgccatgaacagtgttgaatggaatccaaaacacaacttgcttgcctttgccggggatgataagaacaaataccaggctgatgaaggtgtttttcgcatatttggctttgagagcgcagcataaaaagccctgatgaaaggttattttattaaaagagaggcctgaaagaaatcttgtataatttatgatgaagaaagcaaaattttcagatgaacaacttgtttacattgcttttgtaacatttattacatgtcaggtttgaaaaatgctgaaagagacgttgaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="134536" stop="137588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134836" g_stop="134894" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134895" i_stop="135165" i_length="271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135166" g_stop="135234" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="128" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135235" i_stop="135924" i_length="690">
            <donor d_prob="0.137" d_score="0.98"/>
            <acceptor a_prob="0.822" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135925" g_stop="135982" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="186" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135983" i_stop="136088" i_length="106">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136089" g_stop="136188" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="286" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136189" i_stop="136503" i_length="315">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="136504" g_stop="136590" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="373" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="136591" i_stop="136684" i_length="94">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="136685" g_stop="136763" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="452" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="136764" i_stop="136897" i_length="134">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.826" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="136898" g_stop="137030" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="585" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="137031" i_stop="137098" i_length="68">
            <donor d_prob="0.503" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="137099" g_stop="137282" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="782" r_length="197" r_score="0.821"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="784" polyA_stop="803"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E693816" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134836" e_stop="134894"/>
          <exon e_start="135166" e_stop="135234"/>
          <exon e_start="135925" e_stop="135982"/>
          <exon e_start="136089" e_stop="136188"/>
          <exon e_start="136504" e_stop="136590"/>
          <exon e_start="136685" e_stop="136763"/>
          <exon e_start="136898" e_stop="137030"/>
          <exon e_start="137099" e_stop="137282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGGGTACTCATTATTTCTGTCATTTATTAATTCCTAAAATAAGCACTTCTATATTCTATTATCTTAGCTGCTTATAGATATGTATGTAGTCAAAATGAGTGCAGACAAAAACAGAAATGTATCTTAGCTTCATCTCTTTCTATTGCATGTATTTTCTATCATTCATATTTATGATGGTGAGTTTTATTGGTGATATTCTGTGGAGTTCCGTACTATCTGCTTATCATGGAGATTAATTTGGTGCATATTCTTATTCAGTTTTTTTATGGTACAGGATGATGAGCTAACAATCTTGGATGTTCGCAAGTTTAAGCCTATTCATAAGCGCAAGTTTAATTATGAGGTAGTCTCTTCCCCAGCTAAGTTTACGGTGATTCATAAGCCCATGTAGTAGTTATCAAAAGTTATGTAAACTTGACTTGTGCTGTACTGGGTTTAAGCCTACTGCATTTGGTCCGTCTCTTTCTCTTACTGCTGGCCCTTGCTTTTGTGATGCTAGTGTTCCAATGTGAATCAAGTTTCTCAGATGTGTTGCTGCAAGTTTTGACCTTTATCTGTTGGACATTCTGAGAAAGGACTTGAAATCACAGAACACCAGTTCTTCCTCTTGGCTTGATCTTTCTTCCCTCCAAGGGTGTAGAGACAATTACATGTTAATGCAGAAAATTCATGTGTAATGCATATATTTCTCCTAACTTGATTTTCTTGTGGTATGAGTAAATAACCATTTCCTCTTAAACTTAGAGATGCTCTTGAAGTATGGGTGAATGCTTCTGCTTCTCAGGACAAGTCTTTAACTCTAATTTGCCAAAGCTCTTCATATCTATTCAATTCATCCGTATTCTTGATCGTGCATGTAACCGGCCTCTTGTTTCTGGAATTAGTTGCAAAGAGTTCACCTGTTAAAGAAAAGTAATTAGTTGCTCAATGCATTGAGTCATATTCCTACTGGGGCATTCAGCATGATGGGTTCCATACTGTTAACACTTTTGAACTCTCCCAAGTTCCCATGGTTACACTTTTGCTTCATCAGGTAAATGAGATTGCATGGAACACGGGTGGCGATATGTTCTTTCTTACAACTGGAAATGGTGAGTACAAATTAGTGAGTTGGCTTTGCTGGCATTCAGTAAGAAAAGGCTTGAATTTCCAATATGAACTTTTCTCAGTGTCAAAGTTTTCGTGTTTGTCATATAGGAACTGTGGAAGTCTTAGCTTATCCGTCTCTACAAGCTGTTAACACGCTTAATGCTCACACTGCTGGTTGTTACTGCATTGCAATTGATCCACTAGGAAGGTGAGCTTGATATTTTGCTGCAAGTATAATTCCTTTGTGCTATGGTTTAAATGAGACTTACAGAGGCCTCAGACAGCTCAAGAATATGGACATTCCTTTCTAGTAATGGGAAAATTCTTTGGCACTAGTTCCAAGTAGCTAGTACCTTGTGGCACTATGATGTCAATAAGGCTTCTGGCACAGGACCATGCATATGGTCACTCTATGATGTCATTATGAGTTTTGTTGAAGGACCATTCATAGATTCTCTCAGACCATGAGTGGGGGTTTTGATCTGAACTAATTATACCTTATTTTGATTCAATATTACACAAGATATTTTGCTGTTGGAAGTGCTGATTCATTGGTCAGCCTTTGGAGCATCAAGGAGATGCTATGTCTTCGAACATTTACAAAACTTGAGTAAGTTCTCAAGTATGTTTTCGTCCATCTTATAATTTATACGAGTGTCCTGGGTTAGGTAGCTGATCTTTAATTTTTTCTTTTTGCTACTCAGGTGGCCAGTTCGGACAATAAGTTTCAATCACACAGGAGACTACATTGCCTCTGCTAGTGAAGATTTGTTTATTGATATTGTATGTTGTCAAGAACCTGTATACTCTTCTTCTACATAGAAAATCTCTTCAACCTTTCAATAACTTAGCCATTAGTCTCTTCTACATAGAAAATCTCTTTAACCTTTCGATAACTCAGCCATTATTTTGCACAGGCTAATGTCCAATCTGGACGGTCAGTTCACCAAATTCCATGTCGTGCTGCCATGAACAGTGTTGAATGGAATCCAAAACACAACTTGCTTGCCTTTGCCGGGGATGATAAGAACAAATACCAGGCTGATGAAGGTGTCTTTCTGACCTAAGAAAGAACTCTTTACGAGTTCCAAGGCCTAATATTTTTCTTTTCTATGTAGGTGTGTTTCGCATATTTGGCTTTGAGA--GC-GCAT--AGAGCCCTGATGAAAGG-----TTA-T-AAA-AGAGGCCTGAAAAAGATCTTGTATAATTTATGATGAAGAAAGCAAAATTTTCAGATGAACAACTTGTTTACATTGATTTTGTAACATTTATTACATGTCATTTTTGAAAAATGCTGAAAGAGACGTT</genome_strand>
        <mrna_strand>GGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGG...............................................................................................................................................................................................................................................................................GATGATGAGCTAACAATCTTGGATGTTCGCAAGTTTAAACCTATTCATAAGCGCAAGTTTAATTATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGAGATTGCATGGAACACGGGTGGTGATATGTTCTTTCTTACAACTGGAAATG..........................................................................................................GAACTGTGGAAGTCTTAGCTTATCCGTCTCTACAAGCCGTTAACACACTTAATGCTCACACTGCTGGTTGTTACTGCATTGCAATTGATCCACTAGGAAG...........................................................................................................................................................................................................................................................................................................................ATATTTTGCTGTTGGAAGTGCTGATTCATTGGTCAGCCTTTGGAGCATTAAGGAGATGCTATGTCTTCGAACATTTACAAAACTTGA..............................................................................................GTGGCCAGTTCGGACAATAAGTTTCAATCACACAGGAGACTACGTTGCCTCTGCTAGTGAAGATTTGTTTATTGATATT......................................................................................................................................GCTAATGTCCAAACTGGACGGTCAGTCCACCAAATTCCATGTCGTGCTGCCATGAACAGTGTTGAATGGAATCCAAAACACAACTTGCTTGCCTTTGCCGGGGATGATAAGAACAAATACCAGGCTGATGAAG....................................................................GTGTTTTTCGCATATTTGGCTTTGAGAGCGCAGCATAAAAAGCCCTGATGAAAGGTTATTTTATTAAAAGAGAGGCCTGAAAGAAATCTTGTATAATTTATGATGAAGAAAGCAAAATTTTCAGATGAACAACTTGTTTACATTGCTTTTGTAACATTTATTACATGTCAGGTTTGAAAAATGCTGAAAGAGACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356710" ref_strand="+" ref_description="SGN-E356710 [cTOS-21-O21]">
      <seq>ctattcataagcgcaagtttaattatgaggtaaatgagattgcatggaacacgggtggcgatatgttctttcttacaactggaaatggaactgtggaagtcttagcttatccgtctctacaagctgttaacacgcttaatgctcacactgctggttgttactgcattgcaattgatccactaagaagatattttgctgttggaagtgctgattcattggtcagcctttggagcatcaaggagatgctatgtcttcgaacatttacaaaacttgagtggccagttcggacaataagtttcaatcacacaggagactacattgcctctgctagtgaagatttgtttattgatattgctaatgtccaatctggacggtcagttcaccaaattccatgtcgtgctgccatgaacagtggtgaatggaatccaaaacacaacttgcttgcctttgccggggatgataagaacaaataccaggctgatgaaggtgtgtttcgcatatttggctttgagagcgcatagagccctgatgaaaaggtataaaagaagcctgaaaaagatcttggtatatttatgatgaagaaagcaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="+" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="134906" stop="137505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135206" g_stop="135234" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135235" i_stop="135924" i_length="690">
            <donor d_prob="0.137" d_score="0.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135925" g_stop="135982" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="87" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135983" i_stop="136088" i_length="106">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136089" g_stop="136188" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="187" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="136189" i_stop="136503" i_length="315">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136504" g_stop="136590" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="274" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136591" i_stop="136684" i_length="94">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="136685" g_stop="136763" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="353" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="136764" i_stop="136897" i_length="134">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="136898" g_stop="137030" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="486" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="137031" i_stop="137098" i_length="68">
            <donor d_prob="0.503" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="137099" g_stop="137204" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="592" r_length="106" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="+" ref_id="SGN-E356710" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135206" e_stop="135234"/>
          <exon e_start="135925" e_stop="135982"/>
          <exon e_start="136089" e_stop="136188"/>
          <exon e_start="136504" e_stop="136590"/>
          <exon e_start="136685" e_stop="136763"/>
          <exon e_start="136898" e_stop="137030"/>
          <exon e_start="137099" e_stop="137204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCATAAGCGCAAGTTTAATTATGAGGTAGTCTCTTCCCCAGCTAAGTTTACGGTGATTCATAAGCCCATGTAGTAGTTATCAAAAGTTATGTAAACTTGACTTGTGCTGTACTGGGTTTAAGCCTACTGCATTTGGTCCGTCTCTTTCTCTTACTGCTGGCCCTTGCTTTTGTGATGCTAGTGTTCCAATGTGAATCAAGTTTCTCAGATGTGTTGCTGCAAGTTTTGACCTTTATCTGTTGGACATTCTGAGAAAGGACTTGAAATCACAGAACACCAGTTCTTCCTCTTGGCTTGATCTTTCTTCCCTCCAAGGGTGTAGAGACAATTACATGTTAATGCAGAAAATTCATGTGTAATGCATATATTTCTCCTAACTTGATTTTCTTGTGGTATGAGTAAATAACCATTTCCTCTTAAACTTAGAGATGCTCTTGAAGTATGGGTGAATGCTTCTGCTTCTCAGGACAAGTCTTTAACTCTAATTTGCCAAAGCTCTTCATATCTATTCAATTCATCCGTATTCTTGATCGTGCATGTAACCGGCCTCTTGTTTCTGGAATTAGTTGCAAAGAGTTCACCTGTTAAAGAAAAGTAATTAGTTGCTCAATGCATTGAGTCATATTCCTACTGGGGCATTCAGCATGATGGGTTCCATACTGTTAACACTTTTGAACTCTCCCAAGTTCCCATGGTTACACTTTTGCTTCATCAGGTAAATGAGATTGCATGGAACACGGGTGGCGATATGTTCTTTCTTACAACTGGAAATGGTGAGTACAAATTAGTGAGTTGGCTTTGCTGGCATTCAGTAAGAAAAGGCTTGAATTTCCAATATGAACTTTTCTCAGTGTCAAAGTTTTCGTGTTTGTCATATAGGAACTGTGGAAGTCTTAGCTTATCCGTCTCTACAAGCTGTTAACACGCTTAATGCTCACACTGCTGGTTGTTACTGCATTGCAATTGATCCACTAGGAAGGTGAGCTTGATATTTTGCTGCAAGTATAATTCCTTTGTGCTATGGTTTAAATGAGACTTACAGAGGCCTCAGACAGCTCAAGAATATGGACATTCCTTTCTAGTAATGGGAAAATTCTTTGGCACTAGTTCCAAGTAGCTAGTACCTTGTGGCACTATGATGTCAATAAGGCTTCTGGCACAGGACCATGCATATGGTCACTCTATGATGTCATTATGAGTTTTGTTGAAGGACCATTCATAGATTCTCTCAGACCATGAGTGGGGGTTTTGATCTGAACTAATTATACCTTATTTTGATTCAATATTACACAAGATATTTTGCTGTTGGAAGTGCTGATTCATTGGTCAGCCTTTGGAGCATCAAGGAGATGCTATGTCTTCGAACATTTACAAAACTTGAGTAAGTTCTCAAGTATGTTTTCGTCCATCTTATAATTTATACGAGTGTCCTGGGTTAGGTAGCTGATCTTTAATTTTTTCTTTTTGCTACTCAGGTGGCCAGTTCGGACAATAAGTTTCAATCACACAGGAGACTACATTGCCTCTGCTAGTGAAGATTTGTTTATTGATATTGTATGTTGTCAAGAACCTGTATACTCTTCTTCTACATAGAAAATCTCTTCAACCTTTCAATAACTTAGCCATTAGTCTCTTCTACATAGAAAATCTCTTTAACCTTTCGATAACTCAGCCATTATTTTGCACAGGCTAATGTCCAATCTGGACGGTCAGTTCACCAAATTCCATGTCGTGCTGCCATGAACAGTGTTGAATGGAATCCAAAACACAACTTGCTTGCCTTTGCCGGGGATGATAAGAACAAATACCAGGCTGATGAAGGTGTCTTTCTGACCTAAGAAAGAACTCTTTACGAGTTCCAAGGCCTAATATTTTTCTTTTCTATGTAGGTGTGTTTCGCATATTTGGCTTTGAGAGCGCATAGAGCCCTGATGAAAGGTTATAAAAGAGGCCTGAAAAAGATCTTGTATAATTTATGATGAAGAAAGCAAAATT</genome_strand>
        <mrna_strand>CTATTCATAAGCGCAAGTTTAATTATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGAGATTGCATGGAACACGGGTGGCGATATGTTCTTTCTTACAACTGGAAATG..........................................................................................................GAACTGTGGAAGTCTTAGCTTATCCGTCTCTACAAGCTGTTAACACGCTTAATGCTCACACTGCTGGTTGTTACTGCATTGCAATTGATCCACTAAGAAG...........................................................................................................................................................................................................................................................................................................................ATATTTTGCTGTTGGAAGTGCTGATTCATTGGTCAGCCTTTGGAGCATCAAGGAGATGCTATGTCTTCGAACATTTACAAAACTTGA..............................................................................................GTGGCCAGTTCGGACAATAAGTTTCAATCACACAGGAGACTACATTGCCTCTGCTAGTGAAGATTTGTTTATTGATATT......................................................................................................................................GCTAATGTCCAATCTGGACGGTCAGTTCACCAAATTCCATGTCGTGCTGCCATGAACAGTGGTGAATGGAATCCAAAACACAACTTGCTTGCCTTTGCCGGGGATGATAAGAACAAATACCAGGCTGATGAAG....................................................................GTGTGTTTCGCATATTTGGCTTTGAGAGCGCATAGAGCCCTGATGAAAAGGTATAAAAGAAGCCTGAAAAAGATCTTGGTATATTTATGATGAAGAAAGCAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225929" ref_strand="+" ref_description="SGN-E225929 [cLEL-31-E22](-)">
      <seq>tcctttcagggtgctagccaataatgcctacacacaatttctttacacctccatctcaatcatgctgcaatgacatcaatattggaaacttgctcaccattgcggtgtctcgactcagctatcaggctcactgctctgcccactgcatgagcggaagagcagagatctagagttttaacagccagcacttttgaagtttgcagatttgggaaacactgcccatgttctaacgtctctttcagcatttttcaaaaatgacatgtaataaatgttacaaaatcaatgtaaacaagttgttcatctgaaaattttgctttcttcatcataaattatacaagatctttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="137810" stop="136863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137510" g_stop="137162" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="365"/>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E225929" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137510" e_stop="137162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTCAGGGTGCTAGCCAATGATGCCTACACACAATTTCTTTACACCTCCATCTCAATCATGCTGCAATGACATCAATATTGGAAACTTGCTCACCATTGCGGTGTCTCGACTCAGCTATCAGGCTCACTGCTCTGCCCACTGCATGAGCGGAAGAGCAGAGATCTAGAGTTTTAACAGCCAGCACTTTTGAAGTTTGCAGATTTGGGAAACACTGCCCATGTTCTAACGTCTCTTTCAGCATTTTTCAAAAATGACATGTAATAAATGTTACAAAATCAATGTAAACAAGTTGTTCATCTGAAAATTTTGCTTTCTTCATCATAAATTATACAAGATCTTTTTCAG</genome_strand>
        <mrna_strand>TCCTTTCAGGGTGCTAGCCAATAATGCCTACACACAATTTCTTTACACCTCCATCTCAATCATGCTGCAATGACATCAATATTGGAAACTTGCTCACCATTGCGGTGTCTCGACTCAGCTATCAGGCTCACTGCTCTGCCCACTGCATGAGCGGAAGAGCAGAGATCTAGAGTTTTAACAGCCAGCACTTTTGAAGTTTGCAGATTTGGGAAACACTGCCCATGTTCTAACGTCTCTTTCAGCATTTTTCAAAAATGACATGTAATAAATGTTACAAAATCAATGTAAACAAGTTGTTCATCTGAAAATTTTGCTTTCTTCATCATAAATTATACAAGATCTTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200179" ref_strand="+" ref_description="SGN-E200179 [cLEB-7-B18]">
      <seq>gcacgaggttctttgcttcaaagaacttgcagacatccaagtcgaggcattcgtacatgaatgaaaatgggaatatacagtctcaaacctgatgtttcccacatagagccgtctggccggaaaaagaacccaaaggcaacaggagaagagttgtccaccagcagagaaaaatggacagtccagtgcacagaacattcaatattcaggcagggatctggaaaaggaacacacacaccccaagggacgggcaccacagctcaagcatcacatgaaaactctaccattgctccaagctcctttcagggtgctagccaatgatgcctacacacaatttctttacacctccatctcaatcatgctgcaatgacatcaatattggaaacttgctcaccattgcggtgtctcgactcagctatcaggctcactgctctgcccactgcatgagcggaagagcagagatctagagttttaacagccagcacttttgaagtttgcagatttgggaaacactgcccatgttctaacgtctctttcagcatttttcaaaaatgacatgttataaatgttacaaaatcaatgtaaacaagttgttcatttgagaattttgcgttcttcatcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="138189" stop="136872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137898" g_stop="137828" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137827" i_stop="137736" i_length="92">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137735" g_stop="137169" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="636" r_length="567" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E200179" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137898" e_stop="137828"/>
          <exon e_start="137735" e_stop="137169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGTTGTTCTTTGCTTCAAAGAACTTGCAGACATCCAAGTCGAGGCATTCGTACATGAATGAAAATGGTAAATGATTATTCTCAGATTGATTTTGTCACCTTCTTCAGTAAGCACAATTTGTGAGCTCATTTCATTCTTCAACTTTGTTTCTATTTCAGGGAATATACAGTCTCAAACCTGATGTTTCCCACATAGAGCCGTCTGGCCGGAAAAAGAACCCAAAGGCAACAGGAGAAGAGTTGTCCACCAGCAGAGAAAAATGGACAGTCCAGTGCACAGAACATTCAATATTCAGGCAGGGATCTGGAAAAGGAACACACACACCCCAAGGGACGGGCACCACAGCTCAAGCATCACATGAAAACTCTACCATTGCTCCAAGCTCCTTTCAGGGTGCTAGCCAATGATGCCTACACACAATTTCTTTACACCTCCATCTCAATCATGCTGCAATGACATCAATATTGGAAACTTGCTCACCATTGCGGTGTCTCGACTCAGCTATCAGGCTCACTGCTCTGCCCACTGCATGAGCGGAAGAGCAGAGATCTAGAGTTTTAACAGCCAGCACTTTTGAAGTTTGCAGATTTGGGAAACACTGCCCATGTTCTAACGTCTCTTTCAGCATTTTTCAAAAATGACATGTAATAAATGTTACAAAATCAATGTAAACAAGTTGTTCATCTGAAAATTTTGCTTTCTTCATCATAAATTATACAAGATCT</genome_strand>
        <mrna_strand>GCACGAG--GTTCTTTGCTTCAAAGAACTTGCAGACATCCAAGTCGAGGCATTCGTACATGAATGAAAATG............................................................................................GGAATATACAGTCTCAAACCTGATGTTTCCCACATAGAGCCGTCTGGCCGGAAAAAGAACCCAAAGGCAACAGGAGAAGAGTTGTCCACCAGCAGAGAAAAATGGACAGTCCAGTGCACAGAACATTCAATATTCAGGCAGGGATCTGGAAAAGGAACACACACACCCCAAGGGACGGGCACCACAGCTCAAGCATCACATGAAAACTCTACCATTGCTCCAAGCTCCTTTCAGGGTGCTAGCCAATGATGCCTACACACAATTTCTTTACACCTCCATCTCAATCATGCTGCAATGACATCAATATTGGAAACTTGCTCACCATTGCGGTGTCTCGACTCAGCTATCAGGCTCACTGCTCTGCCCACTGCATGAGCGGAAGAGCAGAGATCTAGAGTTTTAACAGCCAGCACTTTTGAAGTTTGCAGATTTGGGAAACACTGCCCATGTTCTAACGTCTCTTTCAGCATTTTTCAAAAATGACATGTTATAAATGTTACAAAATCAATGTAAACAAGTTGTTCATTTGAGAATTTTGCGTTCTTCATCATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553070" ref_strand="+" ref_description="SGN-E553070 [cTSB-5-O8]">
      <seq>atcgaggcagttgcagagggagaagggggatggtagagcactgacaaggtgcatttcggagttgaggatgaaaggagcgagttttgatctgtcgaaagagccacagattgggaagaagatgaagagctctagtgtggagatcaaatggaagccattaacttggttatctcagtatgctgtaactatctgtctcatttgttttacaggattgctcttccctgcttccaggctcgtcctttgcgcttgatgtacttcgtcttcaatctctcttcttacacaaatcagcaaatttggaatctggaaagagttgttctttgcttcaaagaacttgcagacatccaagtcgaggcattcgtacatgaatgaaaatgggaatatacagtctcaaacctgatgtttcccacatagagccgtctggccggaaaaagaacccaaaggcaacaggagaagagttgtccaccagcagagaaaaatggacagtccagtgcacagaacattcaatattcaggcagggatctggaaaaggaacacacacaccccaagggacgggcaccacagctcaagcatcacatgaaaactctaccattgctccaagctcctttcagggtgctagccaatgatgcctacacacaatttctttacacctccatctcaatcatgctgcaatgacatcaatattggaaacttgctcaccattgcggtgtctcgactcagctatcaggctcactgctctgcccactgcatgagcggaagagcagagatctagagttttaacagccagcacttttgaagtttgcagatttgggaaacactgcccatgttctaacgtctctttcagcatttttcaaaaatgacatgtaataaatgttaccaaatcaatgtaaaccagttgttcatcttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="138452" stop="136903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138198" g_stop="137828" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137827" i_stop="137736" i_length="92">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137735" g_stop="137198" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="910" r_length="539" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E553070" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138198" e_stop="137828"/>
          <exon e_start="137735" e_stop="137198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAGGCAGTTGCAGAGGGAGAAGGGGGATGGTAGAGCACTGACAAGGTGCATTTCGGAGTTGAGGATGAAAGGAGCGAGTTTTGATCTGTCGAAAGAGCCACAGATTGGGAAGAAGATGAAGAGCTCTAGTGTGGAGATCAAATGGAAGCCATTAACTTGGTTATCTCAGTATGCTGTAACTATCTGTCTCATTTGTTTTACAGGATTGCTCTTCCCTGCTTCCAGGCTCGTCCTTTGCGCTTGATGTACTTCGTCTTCAATCTCTCTTCTTACACAAATCAGCAAATTTGGAATCTGGAAAGAGTTGTTCTTTGCTTCAAAGAACTTGCAGACATCCAAGTCGAGGCATTCGTACATGAATGAAAATGGTAAATGATTATTCTCAGATTGATTTTGTCACCTTCTTCAGTAAGCACAATTTGTGAGCTCATTTCATTCTTCAACTTTGTTTCTATTTCAGGGAATATACAGTCTCAAACCTGATGTTTCCCACATAGAGCCGTCTGGCCGGAAAAAGAACCCAAAGGCAACAGGAGAAGAGTTGTCCACCAGCAGAGAAAAATGGACAGTCCAGTGCACAGAACATTCAATATTCAGGCAGGGATCTGGAAAAGGAACACACACACCCCAAGGGACGGGCACCACAGCTCAAGCATCACATGAAAACTCTACCATTGCTCCAAGCTCCTTTCAGGGTGCTAGCCAATGATGCCTACACACAATTTCTTTACACCTCCATCTCAATCATGCTGCAATGACATCAATATTGGAAACTTGCTCACCATTGCGGTGTCTCGACTCAGCTATCAGGCTCACTGCTCTGCCCACTGCATGAGCGGAAGAGCAGAGATCTAGAGTTTTAACAGCCAGCACTTTTGAAGTTTGCAGATTTGGGAAACACTGCCCATGTTCTAACGTCTCTTTCAGCATTTTTCAAAAATGACATGTAATAAATGTTACAAAATCAATGTAAACAAGTTGTTCATC-TGAAAATTTTG</genome_strand>
        <mrna_strand>ATCGAGGCAGTTGCAGAGGGAGAAGGGGGATGGTAGAGCACTGACAAGGTGCATTTCGGAGTTGAGGATGAAAGGAGCGAGTTTTGATCTGTCGAAAGAGCCACAGATTGGGAAGAAGATGAAGAGCTCTAGTGTGGAGATCAAATGGAAGCCATTAACTTGGTTATCTCAGTATGCTGTAACTATCTGTCTCATTTGTTTTACAGGATTGCTCTTCCCTGCTTCCAGGCTCGTCCTTTGCGCTTGATGTACTTCGTCTTCAATCTCTCTTCTTACACAAATCAGCAAATTTGGAATCTGGAAAGAGTTGTTCTTTGCTTCAAAGAACTTGCAGACATCCAAGTCGAGGCATTCGTACATGAATGAAAATG............................................................................................GGAATATACAGTCTCAAACCTGATGTTTCCCACATAGAGCCGTCTGGCCGGAAAAAGAACCCAAAGGCAACAGGAGAAGAGTTGTCCACCAGCAGAGAAAAATGGACAGTCCAGTGCACAGAACATTCAATATTCAGGCAGGGATCTGGAAAAGGAACACACACACCCCAAGGGACGGGCACCACAGCTCAAGCATCACATGAAAACTCTACCATTGCTCCAAGCTCCTTTCAGGGTGCTAGCCAATGATGCCTACACACAATTTCTTTACACCTCCATCTCAATCATGCTGCAATGACATCAATATTGGAAACTTGCTCACCATTGCGGTGTCTCGACTCAGCTATCAGGCTCACTGCTCTGCCCACTGCATGAGCGGAAGAGCAGAGATCTAGAGTTTTAACAGCCAGCACTTTTGAAGTTTGCAGATTTGGGAAACACTGCCCATGTTCTAACGTCTCTTTCAGCATTTTTCAAAAATGACATGTAATAAATGTTACCAAATCAATGTAAACCAGTTGTTCATCTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318192" ref_strand="-" ref_description="SGN-E318192 [cTOA-29-H15]">
      <seq>gatgaagagctctagtgtgangatcaaatggaagccattacttggttatctcagtatgctgtaactatctgtctcattgtttttacaggattgctcttccctgcttccaggctcgtcctttgcgcttgatgtacttcgtcttcaatctctcttcttacacaaatcagcaaatttggaatctggaaagagttgttctttgcttcaaagaacttgcagacatccaagtcgaggcattcgtacatgaatgaaaatgggaatatacagtctcaaacctgatgtttcccacatagagccgtctggccggaaaaagaacccaaaggcaacaggagaagagttgtccaccagcagagaaaaatggacagtccagtgcacagaacattcaatattcaggcagggatctggaaaaggaacacacacaccccaagggacgggcaccacagctcaagcatcacatgaaaactctaccattgctccaagctcctttcagggtgctagccaatgatgcctacacacaatttctttacacctccatctcaatcatgctgcaatgacatcaatattggaaacttgctcaccattgcggtgtctcgactcagctatcaggctcactgctctgcccactgcatgagcggaagagcagagatctagagttttaacagccagcacttttgaagtttgcagatttgggaaacactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="138381" stop="136992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138081" g_stop="137828" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137827" i_stop="137736" i_length="92">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137735" g_stop="137292" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="697" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E318192" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318192" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="138081" e_stop="137828"/>
          <exon e_start="137735" e_stop="137292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGAGCTCTAGTGTGGAGATCAAATGGAAGCCATTAACTTGGTTATCTCAGTATGCTGTAACTATCTGTCTCATTTGTTTTACAGGATTGCTCTTCCCTGCTTCCAGGCTCGTCCTTTGCGCTTGATGTACTTCGTCTTCAATCTCTCTTCTTACACAAATCAGCAAATTTGGAATCTGGAAAGAGTTGTTCTTTGCTTCAAAGAACTTGCAGACATCCAAGTCGAGGCATTCGTACATGAATGAAAATGGTAAATGATTATTCTCAGATTGATTTTGTCACCTTCTTCAGTAAGCACAATTTGTGAGCTCATTTCATTCTTCAACTTTGTTTCTATTTCAGGGAATATACAGTCTCAAACCTGATGTTTCCCACATAGAGCCGTCTGGCCGGAAAAAGAACCCAAAGGCAACAGGAGAAGAGTTGTCCACCAGCAGAGAAAAATGGACAGTCCAGTGCACAGAACATTCAATATTCAGGCAGGGATCTGGAAAAGGAACACACACACCCCAAGGGACGGGCACCACAGCTCAAGCATCACATGAAAACTCTACCATTGCTCCAAGCTCCTTTCAGGGTGCTAGCCAATGATGCCTACACACAATTTCTTTACACCTCCATCTCAATCATGCTGCAATGACATCAATATTGGAAACTTGCTCACCATTGCGGTGTCTCGACTCAGCTATCAGGCTCACTGCTCTGCCCACTGCATGAGCGGAAGAGCAGAGATCTAGAGTTTTAACAGCCAGCACTTTTGAAGTTTGCAGATTTGGGAAACACTGC</genome_strand>
        <mrna_strand>GATGAAGAGCTCTAGTGTGANGATCAAATGGAAGCCATT-ACTTGGTTATCTCAGTATGCTGTAACTATCTGTCTCATTGTTTTTACAGGATTGCTCTTCCCTGCTTCCAGGCTCGTCCTTTGCGCTTGATGTACTTCGTCTTCAATCTCTCTTCTTACACAAATCAGCAAATTTGGAATCTGGAAAGAGTTGTTCTTTGCTTCAAAGAACTTGCAGACATCCAAGTCGAGGCATTCGTACATGAATGAAAATG............................................................................................GGAATATACAGTCTCAAACCTGATGTTTCCCACATAGAGCCGTCTGGCCGGAAAAAGAACCCAAAGGCAACAGGAGAAGAGTTGTCCACCAGCAGAGAAAAATGGACAGTCCAGTGCACAGAACATTCAATATTCAGGCAGGGATCTGGAAAAGGAACACACACACCCCAAGGGACGGGCACCACAGCTCAAGCATCACATGAAAACTCTACCATTGCTCCAAGCTCCTTTCAGGGTGCTAGCCAATGATGCCTACACACAATTTCTTTACACCTCCATCTCAATCATGCTGCAATGACATCAATATTGGAAACTTGCTCACCATTGCGGTGTCTCGACTCAGCTATCAGGCTCACTGCTCTGCCCACTGCATGAGCGGAAGAGCAGAGATCTAGAGTTTTAACAGCCAGCACTTTTGAAGTTTGCAGATTTGGGAAACACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280030" ref_strand="-" ref_description="SGN-E280030 [cLEL-7-K10](-)">
      <seq>gcacgaggttctttgcttcaaagaacttgcagacatccaagtcgaggcattcgtacatgaatgaaaatggcaatatacagtctcaaacctgatgtttcccacatagagccgtctggccggaaaaagaacccaaaggcaacaggagaagagttgtccaccagcagagaaaaatggacagtccagtgcacagaacattcaatattcaggcagggatctggaaaaggaacacacacaccccaagggacgggcaccacagctcaagcatcacatgaaaactctaccattgctccaagctcctttcagggtgctagccaatgatgcctacacacaatttctttacacctccatctcaatcatgctgcaatgacatcaatattggaaacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="138189" stop="137118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137898" g_stop="137828" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137827" i_stop="137736" i_length="92">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137735" g_stop="137418" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="387" r_length="318" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E280030" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280030" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="137898" e_stop="137828"/>
          <exon e_start="137735" e_stop="137418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGTTGTTCTTTGCTTCAAAGAACTTGCAGACATCCAAGTCGAGGCATTCGTACATGAATGAAAATGGTAAATGATTATTCTCAGATTGATTTTGTCACCTTCTTCAGTAAGCACAATTTGTGAGCTCATTTCATTCTTCAACTTTGTTTCTATTTCAGGGAATATACAGTCTCAAACCTGATGTTTCCCACATAGAGCCGTCTGGCCGGAAAAAGAACCCAAAGGCAACAGGAGAAGAGTTGTCCACCAGCAGAGAAAAATGGACAGTCCAGTGCACAGAACATTCAATATTCAGGCAGGGATCTGGAAAAGGAACACACACACCCCAAGGGACGGGCACCACAGCTCAAGCATCACATGAAAACTCTACCATTGCTCCAAGCTCCTTTCAGGGTGCTAGCCAATGATGCCTACACACAATTTCTTTACACCTCCATCTCAATCATGCTGCAATGACATCAATATTGGAAACTTGC</genome_strand>
        <mrna_strand>GCACGAG--GTTCTTTGCTTCAAAGAACTTGCAGACATCCAAGTCGAGGCATTCGTACATGAATGAAAATG............................................................................................GCAATATACAGTCTCAAACCTGATGTTTCCCACATAGAGCCGTCTGGCCGGAAAAAGAACCCAAAGGCAACAGGAGAAGAGTTGTCCACCAGCAGAGAAAAATGGACAGTCCAGTGCACAGAACATTCAATATTCAGGCAGGGATCTGGAAAAGGAACACACACACCCCAAGGGACGGGCACCACAGCTCAAGCATCACATGAAAACTCTACCATTGCTCCAAGCTCCTTTCAGGGTGCTAGCCAATGATGCCTACACACAATTTCTTTACACCTCCATCTCAATCATGCTGCAATGACATCAATATTGGAAACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267413" ref_strand="+" ref_description="SGN-E267413 [cLEI-8-A12]">
      <seq>tggacagtattaggagagaaatatttcagatctgttgttttttctttatatttcatgctctgttttttacgattctgttcacctctgtttctgaggaccaccttgatggtaaggttatgtgtcaaaaatggtggattccttcgattctatcagtttgtacttcgttttgtattgtgtttttggtgcaggtgaaactttacaggttttggaaggtatcgaggcagttgcagagggagaagggggatggtagagcactgacaaggtgcatttcggagttgaggatgaaaggagcgagttttgatctgtcgaaagagccacagattgggaagaagatgaagagctctagtgtggagatcaaatggaagccattaacttggttatctcagtatgctgtaactatctgtctcatttgttttacaggattgctcttccctgcttccaggctcgtcctttgcgcttgatgtacttcgtcttcaatctctcttcttacacaaatcatcaaatttggaatctggaaagagttgttctttgcttcaaagaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0032F07-HKHzk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0032F07.1" temp_strand="-" temp_description="C07SLm0032F07.1  AC212313.1 htgs_phase:2 submitted_to_sgn_as:C075SLm0032F07 upload_account_name:france phase2 sequence">
        <position start="138452" stop="137569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138412" g_stop="137869" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0032F07.1" gen_strand="-" ref_id="SGN-E267413" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0032F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138412" e_stop="137869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACAGTATTAGGAGAGAAATATTTCAGATCTGTTGTTTTTTCTTTATATTTCATGCTCTGTTTTTTACGATTCTGTTCACCTCTGTTTCTGAGGACCACCTTGATGGTAAGGTTATGTGTCAAAAATGGTGGATTCCTTCGATTCTATCAGTTTGTACTTCGTTTTGTATTGTGTTTTTGGTGCAGGTGAAACTTTACAGGTTTTGGAAGGTATCGAGGCAGTTGCAGAGGGAGAAGGGGGATGGTAGAGCACTGACAAGGTGCATTTCGGAGTTGAGGATGAAAGGAGCGAGTTTTGATCTGTCGAAAGAGCCACAGATTGGGAAGAAGATGAAGAGCTCTAGTGTGGAGATCAAATGGAAGCCATTAACTTGGTTATCTCAGTATGCTGTAACTATCTGTCTCATTTGTTTTACAGGATTGCTCTTCCCTGCTTCCAGGCTCGTCCTTTGCGCTTGATGTACTTCGTCTTCAATCTCTCTTCTTACACAAATCAGCAAATTTGGAATCTGGAAAGAGTTGTTCTTTGCTTCAAAGAACTT</genome_strand>
        <mrna_strand>TGGACAGTATTAGGAGAGAAATATTTCAGATCTGTTGTTTTTTCTTTATATTTCATGCTCTGTTTTTTACGATTCTGTTCACCTCTGTTTCTGAGGACCACCTTGATGGTAAGGTTATGTGTCAAAAATGGTGGATTCCTTCGATTCTATCAGTTTGTACTTCGTTTTGTATTGTGTTTTTGGTGCAGGTGAAACTTTACAGGTTTTGGAAGGTATCGAGGCAGTTGCAGAGGGAGAAGGGGGATGGTAGAGCACTGACAAGGTGCATTTCGGAGTTGAGGATGAAAGGAGCGAGTTTTGATCTGTCGAAAGAGCCACAGATTGGGAAGAAGATGAAGAGCTCTAGTGTGGAGATCAAATGGAAGCCATTAACTTGGTTATCTCAGTATGCTGTAACTATCTGTCTCATTTGTTTTACAGGATTGCTCTTCCCTGCTTCCAGGCTCGTCCTTTGCGCTTGATGTACTTCGTCTTCAATCTCTCTTCTTACACAAATCATCAAATTTGGAATCTGGAAAGAGTTGTTCTTTGCTTCAAAGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>164</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3029" PGL_stop="1301"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3029" e_stop="1301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3029" e_stop="1301" e_length="1729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3029" stop="1301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTGTCCTTCCCCCCAGGTCCCCTTTTTTTCCTTTCTCTCTCTCCTTTATTTCTCTTTTCATAAGCATATTCTTTCTCTCTCTAGGGTTTTCACTTTCACCTGAAATAGTGTTGTTAAATTGAATGATATGTTAGGATCCTTTGGTTCTTCATCATCTCAATCTCACCCTCATCATGATGAAGAATCTTCTGATCATCATCAACAGCGTAGATTCACCGCTACTGCTACAACTATCACCACCACCACCATCACTACCTCACCAGCTATTCAAATCCGCCAGCTACTCATTAGCTGTGCGGAGTTGATTTCGCAGTCCGATTTCTCGGCCGCGAAAAGACTCCTTACTATATTATCAACTAACTCATCTCCTTTTGGTGATTCAACTGAACGGTTAGTCCATCAATTTACTCGCGCACTTTCCCTTCGTCTCAACCGCTATATATCGTCAACCACCAATCATTTCATGACACCTGTTGAAACAACTCCAACTGATTCTTCTTCTTCGTCATCATTAGCTCTAATTCAATCATCATATCTATCTCTAAACCAAGTTACCCCTTTCATAAGGTTTACTCAATTAACCGCTAATCAAGCGATTTTAGAAGCGATTAACGGTAATCATCAAGCAATCCACATCGTTGATTTCGACATTAATCACGGGGTTCAATGGCCACCGTTAATGCAAGCACTAGCTGATCGTTACCCTGCTCCCACTCTTCGAATCACCGGTACTGGAAATGACCTTGATACCCTTCGTAGAACAGGTGATCGTTTAGCTAAATTTGCTCACTCATTAGGGTTGAGATTTCAATTCCATCCTCTTTATATAGCCAATAATAACCACGATCACGATGAAGATCCTTCTATTATTTCCTCCATTGTACTACTCCCTGATGAAACCCTAGCTATCAACTGTGTTTTCTACCTCCACCGCCTTTTAAAAGACCGCGAAAAGTTAAGGATTTTTTTGCATAGGGTTAAGTCAATGAACCCTAAAATTGTTACAATCGCGGAGAAGGAAGCAAATCATAACCATCCTCTTTTTTTACAAAGATTCATCGAGGCGTTGGATTATTATACAGCTGTGTTTGATTCACTGGAAGCTACATTGCCACCGGGTAGTCGAGAGAGGATGACAGTTGAACAAGTGTGGTTTGGGAGAGAGATTGTTGATATCGTTGCGATGGAAGGAGATAAAAGGAAAGAAAGACATGAAAGGTTTAGATCATGGGAAGTTATGTTGAGGAGTTGTGGATTTAGTAATGTTGCTTTAAGCCCTTTTGCATTATCACAAGCTAAGCTTCTTTTGAGACTTCATTATCCTTCTGAAGGCTATCAACTCGGAGTTTCGAGTAATTCTTTCTTCTTAGGTTGGCAAAATCAACCCCTTTTCTCCATCTCGTCTTGGCGTTGAGAAAAACTATCAAATAGCCAACTTCAGAGGGTAATTAAGACTACTGATAGTTTAGGAGGGATCTGAAGAAAACGCGTGGAGTGAAAACCCTAAATAACCAGATTTTCTAATGAAGTTGTAGTAGTAGAAATTTGCATGGTGAAGAACAATATTGAAGAGGTATTGAAATTTCATGTTTTTTTTGTTTTACTTATTGATATGAATGTTTTAAAATTTTTAACATAGAGGACTAGGTTGATGATATATAGTATTTAAGTTAACTAGTCTTTGTATAACGCAAGATCTTGATCAACTTATTTTTATTTTTAATTA</gDNA_template>
            <first_frame> P  L  S  F  P  P  G  P  L  F  F  L  S  L  S  P  L  F  L  F  S  *  A  Y  S  F  S  L  *  G  F  H  F  H  L  K  *  C  C  *  I  E  *  Y  V  R  I  L  W  F  F  I  I  S  I  S  P  S  S  *  *  R  I  F  *  S  S  S  T  A  *  I  H  R  Y  C  Y  N  Y  H  H  H  H  H  H  Y  L  T  S  Y  S  N  P  P  A  T  H  *  L  C  G  V  D  F  A  V  R  F  L  G  R  E  K  T  P  Y  Y  I  I  N  *  L  I  S  F  W  *  F  N  *  T  V  S  P  S  I  Y  S  R  T  F  P  S  S  Q  P  L  Y  I  V  N  H  Q  S  F  H  D  T  C  *  N  N  S  N  *  F  F  F  F  V  I  I  S  S  N  S  I  I  I  S  I  S  K  P  S  Y  P  F  H  K  V  Y  S  I  N  R  *  S  S  D  F  R  S  D  *  R  *  S  S  S  N  P  H  R  *  F  R  H  *  S  R  G  S  M  A  T  V  N  A  S  T  S  *  S  L  P  C  S  H  S  S  N  H  R  Y  W  K  *  P  *  Y  P  S  *  N  R  *  S  F  S  *  I  C  S  L  I  R  V  E  I  S  I  P  S  S  L  Y  S  Q  *  *  P  R  S  R  *  R  S  F  Y  Y  F  L  H  C  T  T  P  *  *  N  P  S  Y  Q  L  C  F  L  P  P  P  P  F  K  R  P  R  K  V  K  D  F  F  A  *  G  *  V  N  E  P  *  N  C  Y  N  R  G  E  G  S  K  S  *  P  S  S  F  F  T  K  I  H  R  G  V  G  L  L  Y  S  C  V  *  F  T  G  S  Y  I  A  T  G  *  S  R  E  D  D  S  *  T  S  V  V  W  E  R  D  C  *  Y  R  C  D  G  R  R  *  K  E  R  K  T  *  K  V  *  I  M  G  S  Y  V  E  E  L  W  I  *  *  C  C  F  K  P  F  C  I  I  T  S  *  A  S  F  E  T  S  L  S  F  *  R  L  S  T  R  S  F  E  *  F  F  L  L  R  L  A  K  S  T  P  F  L  H  L  V  L  A  L  R  K  T  I  K  *  P  T  S  E  G  N  *  D  Y  *  *  F  R  R  D  L  K  K  T  R  G  V  K  T  L  N  N  Q  I  F  *  *  S  C  S  S  R  N  L  H  G  E  E  Q  Y  *  R  G  I  E  I  S  C  F  F  C  F  T  Y  *  Y  E  C  F  K  I  F  N  I  E  D  *  V  D  D  I  *  Y  L  S  *  L  V  F  V  *  R  K  I  L  I  N  L  F  L  F  L  I  </first_frame>
            <second_frame>  L  C  P  S  P  Q  V  P  F  F  S  F  L  S  L  L  Y  F  S  F  H  K  H  I  L  S  L  S  R  V  F  T  F  T  *  N  S  V  V  K  L  N  D  M  L  G  S  F  G  S  S  S  S  Q  S  H  P  H  H  D  E  E  S  S  D  H  H  Q  Q  R  R  F  T  A  T  A  T  T  I  T  T  T  T  I  T  T  S  P  A  I  Q  I  R  Q  L  L  I  S  C  A  E  L  I  S  Q  S  D  F  S  A  A  K  R  L  L  T  I  L  S  T  N  S  S  P  F  G  D  S  T  E  R  L  V  H  Q  F  T  R  A  L  S  L  R  L  N  R  Y  I  S  S  T  T  N  H  F  M  T  P  V  E  T  T  P  T  D  S  S  S  S  S  S  L  A  L  I  Q  S  S  Y  L  S  L  N  Q  V  T  P  F  I  R  F  T  Q  L  T  A  N  Q  A  I  L  E  A  I  N  G  N  H  Q  A  I  H  I  V  D  F  D  I  N  H  G  V  Q  W  P  P  L  M  Q  A  L  A  D  R  Y  P  A  P  T  L  R  I  T  G  T  G  N  D  L  D  T  L  R  R  T  G  D  R  L  A  K  F  A  H  S  L  G  L  R  F  Q  F  H  P  L  Y  I  A  N  N  N  H  D  H  D  E  D  P  S  I  I  S  S  I  V  L  L  P  D  E  T  L  A  I  N  C  V  F  Y  L  H  R  L  L  K  D  R  E  K  L  R  I  F  L  H  R  V  K  S  M  N  P  K  I  V  T  I  A  E  K  E  A  N  H  N  H  P  L  F  L  Q  R  F  I  E  A  L  D  Y  Y  T  A  V  F  D  S  L  E  A  T  L  P  P  G  S  R  E  R  M  T  V  E  Q  V  W  F  G  R  E  I  V  D  I  V  A  M  E  G  D  K  R  K  E  R  H  E  R  F  R  S  W  E  V  M  L  R  S  C  G  F  S  N  V  A  L  S  P  F  A  L  S  Q  A  K  L  L  L  R  L  H  Y  P  S  E  G  Y  Q  L  G  V  S  S  N  S  F  F  L  G  W  Q  N  Q  P  L  F  S  I  S  S  W  R  *  E  K  L  S  N  S  Q  L  Q  R  V  I  K  T  T  D  S  L  G  G  I  *  R  K  R  V  E  *  K  P  *  I  T  R  F  S  N  E  V  V  V  V  E  I  C  M  V  K  N  N  I  E  E  V  L  K  F  H  V  F  F  V  L  L  I  D  M  N  V  L  K  F  L  T  *  R  T  R  L  M  I  Y  S  I  *  V  N  *  S  L  Y  N  A  R  S  *  S  T  Y  F  Y  F  *  L </second_frame>
            <third_frame>   S  V  L  P  P  R  S  P  F  F  P  F  S  L  S  F  I  S  L  F  I  S  I  F  F  L  S  L  G  F  S  L  S  P  E  I  V  L  L  N  *  M  I  C  *  D  P  L  V  L  H  H  L  N  L  T  L  I  M  M  K  N  L  L  I  I  I  N  S  V  D  S  P  L  L  L  Q  L  S  P  P  P  P  S  L  P  H  Q  L  F  K  S  A  S  Y  S  L  A  V  R  S  *  F  R  S  P  I  S  R  P  R  K  D  S  L  L  Y  Y  Q  L  T  H  L  L  L  V  I  Q  L  N  G  *  S  I  N  L  L  A  H  F  P  F  V  S  T  A  I  Y  R  Q  P  P  I  I  S  *  H  L  L  K  Q  L  Q  L  I  L  L  L  R  H  H  *  L  *  F  N  H  H  I  Y  L  *  T  K  L  P  L  S  *  G  L  L  N  *  P  L  I  K  R  F  *  K  R  L  T  V  I  I  K  Q  S  T  S  L  I  S  T  L  I  T  G  F  N  G  H  R  *  C  K  H  *  L  I  V  T  L  L  P  L  F  E  S  P  V  L  E  M  T  L  I  P  F  V  E  Q  V  I  V  *  L  N  L  L  T  H  *  G  *  D  F  N  S  I  L  F  I  *  P  I  I  T  T  I  T  M  K  I  L  L  L  F  P  P  L  Y  Y  S  L  M  K  P  *  L  S  T  V  F  S  T  S  T  A  F  *  K  T  A  K  S  *  G  F  F  C  I  G  L  S  Q  *  T  L  K  L  L  Q  S  R  R  R  K  Q  I  I  T  I  L  F  F  Y  K  D  S  S  R  R  W  I  I  I  Q  L  C  L  I  H  W  K  L  H  C  H  R  V  V  E  R  G  *  Q  L  N  K  C  G  L  G  E  R  L  L  I  S  L  R  W  K  E  I  K  G  K  K  D  M  K  G  L  D  H  G  K  L  C  *  G  V  V  D  L  V  M  L  L  *  A  L  L  H  Y  H  K  L  S  F  F  *  D  F  I  I  L  L  K  A  I  N  S  E  F  R  V  I  L  S  S  *  V  G  K  I  N  P  F  S  P  S  R  L  G  V  E  K  N  Y  Q  I  A  N  F  R  G  *  L  R  L  L  I  V  *  E  G  S  E  E  N  A  W  S  E  N  P  K  *  P  D  F  L  M  K  L  *  *  *  K  F  A  W  *  R  T  I  L  K  R  Y  *  N  F  M  F  F  L  F  Y  L  L  I  *  M  F  *  N  F  *  H  R  G  L  G  *  *  Y  I  V  F  K  L  T  S  L  C  I  T  Q  D  L  D  Q  L  I  F  I  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2923" stop="1613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1308</number_coding_nucleotides>
                  <number_encoded_amino_acids>436</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSVVKLNDMLGSFGSSSSQSHPHHDEESSDHHQQRRFTATATTITTTTITTSPAIQIRQLLISCAELISQSDFSAAKRLLTILSTNSSPFGDSTERLVHQFTRALSLRLNRYISSTTNHFMTPVETTPTDSSSSSSLALIQSSYLSLNQVTPFIRFTQLTANQAILEAINGNHQAIHIVDFDINHGVQWPPLMQALADRYPAPTLRITGTGNDLDTLRRTGDRLAKFAHSLGLRFQFHPLYIANNNHDHDEDPSIISSIVLLPDETLAINCVFYLHRLLKDREKLRIFLHRVKSMNPKIVTIAEKEANHNHPLFLQRFIEALDYYTAVFDSLEATLPPGSRERMTVEQVWFGREIVDIVAMEGDKRKERHERFRSWEVMLRSCGFSNVALSPFALSQAKLLLRLHYPSEGYQLGVSSNSFFLGWQNQPLFSISSWR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10965" PGL_stop="7312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10965" e_stop="10572"/>
            <exon e_start="9972" e_stop="9764"/>
            <exon e_start="9154" e_stop="9064"/>
            <exon e_start="8927" e_stop="7312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10965" e_stop="10572" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="10571" i_stop="9973" i_length="599"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9972" e_stop="9764" e_length="209"/>
          </exon>
          <intron i_serial="2" don_prob="0.898" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9763" i_stop="9155" i_length="609"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9154" e_stop="9064" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.991">
            <gDNA_intron_boundary i_start="9063" i_stop="8928" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8927" e_stop="7312" e_length="1616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10965" stop="10572"/>
              <exon start="9972" stop="9764"/>
              <exon start="9154" stop="9064"/>
              <exon start="8927" stop="7316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10840" stop="10572"/>
              <exon start="9972" stop="9764"/>
              <exon start="9154" stop="9064"/>
              <exon start="8927" stop="7312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7956" stop="7428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7956" stop="7430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7956" stop="7535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7814" stop="7329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7814" stop="7338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTAAAATTTGTATGTACATGAGTATATTTTTTGAATTTCGCTATACGGATTCGCCATGAAAAATAGGGAAACTTATGAAGCAAATGATGAATTGATCGATTTTTTTTGTACTTTTTGCTGGAAAAATGGCAGGAAATCGTGGAATTAGGTTTCGGTATATGTTTCATCTATGGCCGGAACTGCCAAGAGACACCATACCGGAGAGGAAGGAGGAGCAGGAAGCTCCGATGACGTTTTTGAGCCGTCAATAGATAAATTTCCAGTCGATGTAATAAGTTGTATATTGGAAAAACTGGATTTGGAATCTGTCTGCAGCGCCGCTTGTGTCTCTCAGACTCTCAGTTCCGCCGCCGCACAAGTTTTCACTTCTCTATCGTCTCTCGATCTTTCG : GGACATTATTTGGATGAAGAAACTCTAGAACAAGTAGCGCGTAGGGTCCAAGGAGCCAAGAGTTTAACTATTGATTGCCTCCAACTGAAGAATGGCACCTCCATTTTCAATATTCTTGGTGAACATATCGAAGAATTGAGTTTGCTCAAATGTTCCAGAGTGTCTTACCATATTCTTAGTGCAATTAGAGAAAGGTGCCCCAACTTAAG : GTCCTTGCTGATTGAATTTGCCGGGAGTGAAGATCCACAACTTTTCGAGAACAAACTTGCAGAAATGCTCCAAAAGTTGACCTTGTTAGAG : GTGCTGTCCATAAAAATCCGAGGGACCTACTTTGATGTATTTGATATACGACCTCTTGAACTATTTCTGCCCAAGAGTTTAAGAAAATTGAAGTTACAGCAAACGGAGGGAGACAAATTTGTCCATTGGTTAGAAAAGATCAGAGATATCCCTTGGTTCAACTTGCAAAGCTTATCTCTTGTCTTGGACGTTATATCAGATAGTCTTCTCAGGACAGTTGTGAATTCTCTTCCTCTTTTGGTTGAGCTGGATCTTGAAGACAGACCTTTTATGGATCCAACGATAGAGGACTTGACCAACGTTGGACTGCAGCGTGTGCAGTCCTGCAAGCATCTAATTACCCTCGCAATTGTTCGAAGTAGTATGAATTATCGCACTGCATTTAGGAGGGTAAACAATATGGGCATGTTCCTTCTTTCTGAAGGTTGTGGAAGGTTGGAATCAGTGAAACTTGGTGGGTTTGCAAATGTTACTGATGCTGGGTTTTCGACAATTCTGAACTCATGCCGGAAACTGAAGAAACTTGAAGTGTTGAATTCATGTCTATTATCAGACTTGGCGTTTCATAATATGAGAGGAGTTGCAAGGTCCCTAATTGAATTAAGGTTGTTATCATGCAGGCTTCTAACTAGTGAAGCTTTGGAAGGTTTGTCCTTGTTGAGTAAGTTGGAGGTACTTGACACAAGTGGGTGCAGAAGCATTGGAAACCCCTGTCTCTTTGTCATATCAAGAGTTACTACACTCACAAAACTAAACTTAGCAGAAGCTGATATCACCGACAAGGGTCTTGCTTTGCTTGGTATGGGAAACTTGGGCATTACACAGTTGTGCATCAGAGGCTGTAAGAGAGTAACTGATAAGGGAATTGAGCGTTTATTTTGTGCTGAAGGAAAAATTGGCAAGACGTTATCATTGTTGGATGTCAGTCGCATGCCCGGAATAACTGATGCAGCTATCTTTACCATTGCATCTGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTAGTTTAGGCATATGCATTATTGTGCTTGCTCTCTACCTTTTGAATTACAAACACCCTGTTAAACCGTTTTAAATGAACCATGATTATTGATCAATTATAGTTTTATACTTGTTATTT</gDNA_template>
            <first_frame> N  L  K  F  V  C  T  *  V  Y  F  L  N  F  A  I  R  I  R  H  E  K  *  G  N  L  *  S  K  *  *  I  D  R  F  F  L  Y  F  L  L  E  K  W  Q  E  I  V  E  L  G  F  G  I  C  F  I  Y  G  R  N  C  Q  E  T  P  Y  R  R  G  R  R  S  R  K  L  R  *  R  F  *  A  V  N  R  *  I  S  S  R  C  N  K  L  Y  I  G  K  T  G  F  G  I  C  L  Q  R  R  L  C  L  S  D  S  Q  F  R  R  R  T  S  F  H  F  S  I  V  S  R  S  F   : G  T  L  F  G  *  R  N  S  R  T  S  S  A  *  G  P  R  S  Q  E  F  N  Y  *  L  P  P  T  E  E  W  H  L  H  F  Q  Y  S  W  *  T  Y  R  R  I  E  F  A  Q  M  F  Q  S  V  L  P  Y  S  *  C  N  *  R  K  V  P  Q  L  K  :  V  L  A  D  *  I  C  R  E  *  R  S  T  T  F  R  E  Q  T  C  R  N  A  P  K  V  D  L  V  R   : G  A  V  H  K  N  P  R  D  L  L  *  C  I  *  Y  T  T  S  *  T  I  S  A  Q  E  F  K  K  I  E  V  T  A  N  G  G  R  Q  I  C  P  L  V  R  K  D  Q  R  Y  P  L  V  Q  L  A  K  L  I  S  C  L  G  R  Y  I  R  *  S  S  Q  D  S  C  E  F  S  S  S  F  G  *  A  G  S  *  R  Q  T  F  Y  G  S  N  D  R  G  L  D  Q  R  W  T  A  A  C  A  V  L  Q  A  S  N  Y  P  R  N  C  S  K  *  Y  E  L  S  H  C  I  *  E  G  K  Q  Y  G  H  V  P  S  F  *  R  L  W  K  V  G  I  S  E  T  W  W  V  C  K  C  Y  *  C  W  V  F  D  N  S  E  L  M  P  E  T  E  E  T  *  S  V  E  F  M  S  I  I  R  L  G  V  S  *  Y  E  R  S  C  K  V  P  N  *  I  K  V  V  I  M  Q  A  S  N  *  *  S  F  G  R  F  V  L  V  E  *  V  G  G  T  *  H  K  W  V  Q  K  H  W  K  P  L  S  L  C  H  I  K  S  Y  Y  T  H  K  T  K  L  S  R  S  *  Y  H  R  Q  G  S  C  F  A  W  Y  G  K  L  G  H  Y  T  V  V  H  Q  R  L  *  E  S  N  *  *  G  N  *  A  F  I  L  C  *  R  K  N  W  Q  D  V  I  I  V  G  C  Q  S  H  A  R  N  N  *  C  S  Y  L  Y  H  C  I  C  C  *  S  I  N  *  F  I  S  K  V  L  L  S  C  D  R  C  W  C  E  D  V  V  G  *  T  K  S  Q  G  *  S  T  A  K  A  *  S  L  *  M  S  R  S  V  W  *  L  D  N  V  F  F  L  W  F  A  L  A  W  C  W  R  Y  S  V  S  Q  *  K  R  R  F  L  H  N  M  Q  C  A  T  L  A  G  C  V  F  *  W  L  *  I  W  V  P  *  W  L  A  I  S  S  D  H  Y  S  S  L  T  E  G  G  F  C  K  R  S  R  S  R  *  A  G  D  A  K  F  L  F  T  Y  *  *  H  F  I  F  *  V  A  Q  V  G  D  A  Y  W  V  C  C  N  H  S  F  V  S  L  F  V  L  E  L  D  F  C  L  F  Y  F  I  A  F  S  P  S  L  G  I  C  I  I  V  L  A  L  Y  L  L  N  Y  K  H  P  V  K  P  F  *  M  N  H  D  Y  *  S  I  I  V  L  Y  L  L  F </first_frame>
            <second_frame>  I  *  N  L  Y  V  H  E  Y  I  F  *  I  S  L  Y  G  F  A  M  K  N  R  E  T  Y  E  A  N  D  E  L  I  D  F  F  C  T  F  C  W  K  N  G  R  K  S  W  N  *  V  S  V  Y  V  S  S  M  A  G  T  A  K  R  H  H  T  G  E  E  G  G  A  G  S  S  D  D  V  F  E  P  S  I  D  K  F  P  V  D  V  I  S  C  I  L  E  K  L  D  L  E  S  V  C  S  A  A  C  V  S  Q  T  L  S  S  A  A  A  Q  V  F  T  S  L  S  S  L  D  L  S  :  G  H  Y  L  D  E  E  T  L  E  Q  V  A  R  R  V  Q  G  A  K  S  L  T  I  D  C  L  Q  L  K  N  G  T  S  I  F  N  I  L  G  E  H  I  E  E  L  S  L  L  K  C  S  R  V  S  Y  H  I  L  S  A  I  R  E  R  C  P  N  L  R :   S  L  L  I  E  F  A  G  S  E  D  P  Q  L  F  E  N  K  L  A  E  M  L  Q  K  L  T  L  L  E  :  V  L  S  I  K  I  R  G  T  Y  F  D  V  F  D  I  R  P  L  E  L  F  L  P  K  S  L  R  K  L  K  L  Q  Q  T  E  G  D  K  F  V  H  W  L  E  K  I  R  D  I  P  W  F  N  L  Q  S  L  S  L  V  L  D  V  I  S  D  S  L  L  R  T  V  V  N  S  L  P  L  L  V  E  L  D  L  E  D  R  P  F  M  D  P  T  I  E  D  L  T  N  V  G  L  Q  R  V  Q  S  C  K  H  L  I  T  L  A  I  V  R  S  S  M  N  Y  R  T  A  F  R  R  V  N  N  M  G  M  F  L  L  S  E  G  C  G  R  L  E  S  V  K  L  G  G  F  A  N  V  T  D  A  G  F  S  T  I  L  N  S  C  R  K  L  K  K  L  E  V  L  N  S  C  L  L  S  D  L  A  F  H  N  M  R  G  V  A  R  S  L  I  E  L  R  L  L  S  C  R  L  L  T  S  E  A  L  E  G  L  S  L  L  S  K  L  E  V  L  D  T  S  G  C  R  S  I  G  N  P  C  L  F  V  I  S  R  V  T  T  L  T  K  L  N  L  A  E  A  D  I  T  D  K  G  L  A  L  L  G  M  G  N  L  G  I  T  Q  L  C  I  R  G  C  K  R  V  T  D  K  G  I  E  R  L  F  C  A  E  G  K  I  G  K  T  L  S  L  L  D  V  S  R  M  P  G  I  T  D  A  A  I  F  T  I  A  S  A  A  K  A  L  T  D  L  S  L  R  Y  C  F  H  V  T  D  A  G  V  K  M  L  L  D  R  P  N  H  K  V  S  L  L  Q  K  L  D  L  Y  K  C  R  G  L  S  G  D  W  I  M  S  S  F  C  G  L  R  W  L  G  V  G  G  T  L  L  V  N  K  R  D  D  F  S  T  I  C  N  V  R  P  W  L  V  V  C  F  D  G  C  E  F  G  C  H  D  G  W  Q  F  H  R  I  I  I  H  H  *  Q  K  A  D  F  V  R  G  A  D  Q  D  R  L  E  T  R  S  S  F  L  H  T  S  N  I  S  Y  F  E  *  H  K  L  V  M  H  I  G  F  A  A  T  T  L  L  C  L  Y  L  C  L  N  *  T  F  V  Y  F  I  L  *  P  F  L  L  V  *  A  Y  A  L  L  C  L  L  S  T  F  *  I  T  N  T  L  L  N  R  F  K  *  T  M  I  I  D  Q  L  *  F  Y  T  C  Y   </second_frame>
            <third_frame>   S  K  I  C  M  Y  M  S  I  F  F  E  F  R  Y  T  D  S  P  *  K  I  G  K  L  M  K  Q  M  M  N  *  S  I  F  F  V  L  F  A  G  K  M  A  G  N  R  G  I  R  F  R  Y  M  F  H  L  W  P  E  L  P  R  D  T  I  P  E  R  K  E  E  Q  E  A  P  M  T  F  L  S  R  Q  *  I  N  F  Q  S  M  *  *  V  V  Y  W  K  N  W  I  W  N  L  S  A  A  P  L  V  S  L  R  L  S  V  P  P  P  H  K  F  S  L  L  Y  R  L  S  I  F  R :   D  I  I  W  M  K  K  L  *  N  K  *  R  V  G  S  K  E  P  R  V  *  L  L  I  A  S  N  *  R  M  A  P  P  F  S  I  F  L  V  N  I  S  K  N  *  V  C  S  N  V  P  E  C  L  T  I  F  L  V  Q  L  E  K  G  A  P  T  *   : G  P  C  *  L  N  L  P  G  V  K  I  H  N  F  S  R  T  N  L  Q  K  C  S  K  S  *  P  C  *  R :   C  C  P  *  K  S  E  G  P  T  L  M  Y  L  I  Y  D  L  L  N  Y  F  C  P  R  V  *  E  N  *  S  Y  S  K  R  R  E  T  N  L  S  I  G  *  K  R  S  E  I  S  L  G  S  T  C  K  A  Y  L  L  S  W  T  L  Y  Q  I  V  F  S  G  Q  L  *  I  L  F  L  F  W  L  S  W  I  L  K  T  D  L  L  W  I  Q  R  *  R  T  *  P  T  L  D  C  S  V  C  S  P  A  S  I  *  L  P  S  Q  L  F  E  V  V  *  I  I  A  L  H  L  G  G  *  T  I  W  A  C  S  F  F  L  K  V  V  E  G  W  N  Q  *  N  L  V  G  L  Q  M  L  L  M  L  G  F  R  Q  F  *  T  H  A  G  N  *  R  N  L  K  C  *  I  H  V  Y  Y  Q  T  W  R  F  I  I  *  E  E  L  Q  G  P  *  L  N  *  G  C  Y  H  A  G  F  *  L  V  K  L  W  K  V  C  P  C  *  V  S  W  R  Y  L  T  Q  V  G  A  E  A  L  E  T  P  V  S  L  S  Y  Q  E  L  L  H  S  Q  N  *  T  *  Q  K  L  I  S  P  T  R  V  L  L  C  L  V  W  E  T  W  A  L  H  S  C  A  S  E  A  V  R  E  *  L  I  R  E  L  S  V  Y  F  V  L  K  E  K  L  A  R  R  Y  H  C  W  M  S  V  A  C  P  E  *  L  M  Q  L  S  L  P  L  H  L  L  L  K  H  *  L  I  Y  L  *  G  T  A  F  M  *  Q  M  L  V  *  R  C  C  W  I  D  Q  I  T  R  L  V  Y  C  K  S  L  I  F  I  N  V  A  V  C  L  V  I  G  *  C  L  L  S  V  V  C  A  G  L  V  L  E  V  L  C  *  S  I  K  E  T  I  S  P  Q  Y  A  M  C  D  P  G  W  L  C  V  L  M  A  V  N  L  G  A  M  M  V  G  N  F  I  G  S  L  F  I  I  D  R  R  R  I  L  *  E  E  Q  I  K  I  G  W  R  R  E  V  P  F  Y  I  L  V  T  F  H  I  L  S  S  T  S  W  *  C  I  L  G  L  L  Q  P  L  F  C  V  S  I  C  A  *  T  R  L  L  F  I  L  F  Y  S  L  F  S  *  F  R  H  M  H  Y  C  A  C  S  L  P  F  E  L  Q  T  P  C  *  T  V  L  N  E  P  *  L  L  I  N  Y  S  F  I  L  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10814" stop="10572"/>
                    <exon start="9972" stop="9764"/>
                    <exon start="9154" stop="9064"/>
                    <exon start="8927" stop="7626"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1842</number_coding_nucleotides>
                  <number_encoded_amino_acids>614</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSVYVSSMAGTAKRHHTGEEGGAGSSDDVFEPSIDKFPVDVISCILEKLDLESVCSAACVSQTLSSAAAQVFTSLSSLDLSGHYLDEETLEQVARRVQGAKSLTIDCLQLKNGTSIFNILGEHIEELSLLKCSRVSYHILSAIRERCPNLRSLLIEFAGSEDPQLFENKLAEMLQKLTLLEVLSIKIRGTYFDVFDIRPLELFLPKSLRKLKLQQTEGDKFVHWLEKIRDIPWFNLQSLSLVLDVISDSLLRTVVNSLPLLVELDLEDRPFMDPTIEDLTNVGLQRVQSCKHLITLAIVRSSMNYRTAFRRVNNMGMFLLSEGCGRLESVKLGGFANVTDAGFSTILNSCRKLKKLEVLNSCLLSDLAFHNMRGVARSLIELRLLSCRLLTSEALEGLSLLSKLEVLDTSGCRSIGNPCLFVISRVTTLTKLNLAEADITDKGLALLGMGNLGITQLCIRGCKRVTDKGIERLFCAEGKIGKTLSLLDVSRMPGITDAAIFTIASAAKALTDLSLRYCFHVTDAGVKMLLDRPNHKVSLLQKLDLYKCRGLSGDWIMSSFCGLRWLGVGGTLLVNKRDDFSTICNVRPWLVVCFDGCEFGCHDGWQFHRIIIHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="27005" PGL_stop="28295"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27005" e_stop="28295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="27005" e_stop="28295" e_length="1291"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27005" stop="27654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27005" stop="27431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27016" stop="27364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27381" stop="28059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27520" stop="28058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27687" stop="28295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGAGAGATAAATACATTGATAGCCTTCCAACTTCTGGCAGTAGCAGCTGGAAACTATCAACCGTTCCCGAGCCTCTAAGCATTAATGTGGCAACATTTGAAAAACCATTGAGGAAGCTGACCTTTGGTCATCTTCTAGAAGCGACCAACGGGTTCAGCTCTGAGAGCATGATTGGCTCTGGAGGTTTTGGTGAAGTCTATAAGGCTCAGCTGAGAGATGGCAGTACTGTCGCAATCAAGAAGCTCGTGCACGTAACAGGTCAAGGAGACAGAGAATTCATGGCTGAAATGGAGACTATTGGAAAAATCAAACATAGAAACCTTGTCCCTTTGTTGGGATATTGCAAGATTGGGGAGGAAAGGCTTCTCGTATACGAATACATGAAATGGGGAAGTCTTGAATCTGTTCTTCATGATGGCGGGAAAGGAGGGATGTTTCTTGATTGGCCAGCTAGAAAGAAAATCGCGATAGGATCAGCAAGAGGGTTAGCATTTCTTCACCACAGCTGCATACCACACATAATTCATCGCGATATGAAGTCCAGTAATGTACTTTTAGACGAAAACTTTGAGGCGCGAGTTTCTGATTTTGGAATGGCAAGGCTGGTAAATGCTCTGGATACTCATTTAAGTGTGAGTACACTTGCTGGTACTCCAGGTTATGTTCCTCCAGAGTACTACCAAAGTTTCAGGTGCACCGCAAAAGGGGACGTGTACAGTTATGGTGTCATACTGTTGGAGCTTCTTTCAGGGAAAAGGCCAATAGATCCCCGTGTATTCGGTGATGATAACAATCTTGTTGGATGGGCAAAGCAACTTCATAACGATAAACAAAGTCACGAGATTCTTGATCCTGAGCTAATAACAAATCTATCTGGTGATGCTGAACTCTATCATTACTTGAAAGTTGCATTTGAATGCCTTGATGAGAAATCTTACAAAAGGCCAACAATGATACAAGTGATGACCAAGTTTAAAGAAGTACAAACTGATTCAGAAAGCGATATTCTTGATGGCATTTCAGTGAAAGGTTCTATACTCGAGGAATCGCAAGAAAGGGAACCGTAAATCAATGATATTTGATCTTTTTGTGGTTAGAATTCTCTTCTTTTTTTCTCTTTTTCGCCTCATGGATAGTAGTAAAAACTTTTATCTTTAATGGTTCTTCACTATTGAGATCGATAAGAGTTTATACTTCAGATTTTGCCTACTGTGTAAATATTTAGAACACGACGATGAATGGGAGATGTAAAGATGTTTTTATATGAATGTTCCAATGAATTTCCCTTA</gDNA_template>
            <first_frame> E  E  R  *  I  H  *  *  P  S  N  F  W  Q  *  Q  L  E  T  I  N  R  S  R  A  S  K  H  *  C  G  N  I  *  K  T  I  E  E  A  D  L  W  S  S  S  R  S  D  Q  R  V  Q  L  *  E  H  D  W  L  W  R  F  W  *  S  L  *  G  S  A  E  R  W  Q  Y  C  R  N  Q  E  A  R  A  R  N  R  S  R  R  Q  R  I  H  G  *  N  G  D  Y  W  K  N  Q  T  *  K  P  C  P  F  V  G  I  L  Q  D  W  G  G  K  A  S  R  I  R  I  H  E  M  G  K  S  *  I  C  S  S  *  W  R  E  R  R  D  V  S  *  L  A  S  *  K  E  N  R  D  R  I  S  K  R  V  S  I  S  S  P  Q  L  H  T  T  H  N  S  S  R  Y  E  V  Q  *  C  T  F  R  R  K  L  *  G  A  S  F  *  F  W  N  G  K  A  G  K  C  S  G  Y  S  F  K  C  E  Y  T  C  W  Y  S  R  L  C  S  S  R  V  L  P  K  F  Q  V  H  R  K  R  G  R  V  Q  L  W  C  H  T  V  G  A  S  F  R  E  K  A  N  R  S  P  C  I  R  *  *  *  Q  S  C  W  M  G  K  A  T  S  *  R  *  T  K  S  R  D  S  *  S  *  A  N  N  K  S  I  W  *  C  *  T  L  S  L  L  E  S  C  I  *  M  P  *  *  E  I  L  Q  K  A  N  N  D  T  S  D  D  Q  V  *  R  S  T  N  *  F  R  K  R  Y  S  *  W  H  F  S  E  R  F  Y  T  R  G  I  A  R  K  G  T  V  N  Q  *  Y  L  I  F  L  W  L  E  F  S  S  F  F  L  F  F  A  S  W  I  V  V  K  T  F  I  F  N  G  S  S  L  L  R  S  I  R  V  Y  T  S  D  F  A  Y  C  V  N  I  *  N  T  T  M  N  G  R  C  K  D  V  F  I  *  M  F  Q  *  I  S  L  </first_frame>
            <second_frame>  K  R  D  K  Y  I  D  S  L  P  T  S  G  S  S  S  W  K  L  S  T  V  P  E  P  L  S  I  N  V  A  T  F  E  K  P  L  R  K  L  T  F  G  H  L  L  E  A  T  N  G  F  S  S  E  S  M  I  G  S  G  G  F  G  E  V  Y  K  A  Q  L  R  D  G  S  T  V  A  I  K  K  L  V  H  V  T  G  Q  G  D  R  E  F  M  A  E  M  E  T  I  G  K  I  K  H  R  N  L  V  P  L  L  G  Y  C  K  I  G  E  E  R  L  L  V  Y  E  Y  M  K  W  G  S  L  E  S  V  L  H  D  G  G  K  G  G  M  F  L  D  W  P  A  R  K  K  I  A  I  G  S  A  R  G  L  A  F  L  H  H  S  C  I  P  H  I  I  H  R  D  M  K  S  S  N  V  L  L  D  E  N  F  E  A  R  V  S  D  F  G  M  A  R  L  V  N  A  L  D  T  H  L  S  V  S  T  L  A  G  T  P  G  Y  V  P  P  E  Y  Y  Q  S  F  R  C  T  A  K  G  D  V  Y  S  Y  G  V  I  L  L  E  L  L  S  G  K  R  P  I  D  P  R  V  F  G  D  D  N  N  L  V  G  W  A  K  Q  L  H  N  D  K  Q  S  H  E  I  L  D  P  E  L  I  T  N  L  S  G  D  A  E  L  Y  H  Y  L  K  V  A  F  E  C  L  D  E  K  S  Y  K  R  P  T  M  I  Q  V  M  T  K  F  K  E  V  Q  T  D  S  E  S  D  I  L  D  G  I  S  V  K  G  S  I  L  E  E  S  Q  E  R  E  P  *  I  N  D  I  *  S  F  C  G  *  N  S  L  L  F  F  S  F  S  P  H  G  *  *  *  K  L  L  S  L  M  V  L  H  Y  *  D  R  *  E  F  I  L  Q  I  L  P  T  V  *  I  F  R  T  R  R  *  M  G  D  V  K  M  F  L  Y  E  C  S  N  E  F  P  L </second_frame>
            <third_frame>   R  E  I  N  T  L  I  A  F  Q  L  L  A  V  A  A  G  N  Y  Q  P  F  P  S  L  *  A  L  M  W  Q  H  L  K  N  H  *  G  S  *  P  L  V  I  F  *  K  R  P  T  G  S  A  L  R  A  *  L  A  L  E  V  L  V  K  S  I  R  L  S  *  E  M  A  V  L  S  Q  S  R  S  S  C  T  *  Q  V  K  E  T  E  N  S  W  L  K  W  R  L  L  E  K  S  N  I  E  T  L  S  L  C  W  D  I  A  R  L  G  R  K  G  F  S  Y  T  N  T  *  N  G  E  V  L  N  L  F  F  M  M  A  G  K  E  G  C  F  L  I  G  Q  L  E  R  K  S  R  *  D  Q  Q  E  G  *  H  F  F  T  T  A  A  Y  H  T  *  F  I  A  I  *  S  P  V  M  Y  F  *  T  K  T  L  R  R  E  F  L  I  L  E  W  Q  G  W  *  M  L  W  I  L  I  *  V  *  V  H  L  L  V  L  Q  V  M  F  L  Q  S  T  T  K  V  S  G  A  P  Q  K  G  T  C  T  V  M  V  S  Y  C  W  S  F  F  Q  G  K  G  Q  *  I  P  V  Y  S  V  M  I  T  I  L  L  D  G  Q  S  N  F  I  T  I  N  K  V  T  R  F  L  I  L  S  *  *  Q  I  Y  L  V  M  L  N  S  I  I  T  *  K  L  H  L  N  A  L  M  R  N  L  T  K  G  Q  Q  *  Y  K  *  *  P  S  L  K  K  Y  K  L  I  Q  K  A  I  F  L  M  A  F  Q  *  K  V  L  Y  S  R  N  R  K  K  G  N  R  K  S  M  I  F  D  L  F  V  V  R  I  L  F  F  F  S  L  F  R  L  M  D  S  S  K  N  F  Y  L  *  W  F  F  T  I  E  I  D  K  S  L  Y  F  R  F  C  L  L  C  K  Y  L  E  H  D  D  E  W  E  M  *  R  C  F  Y  M  N  V  P  M  N  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27006" stop="28073"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRDKYIDSLPTSGSSSWKLSTVPEPLSINVATFEKPLRKLTFGHLLEATNGFSSESMIGSGGFGEVYKAQLRDGSTVAIKKLVHVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKWGSLESVLHDGGKGGMFLDWPARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLVNALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPIDPRVFGDDNNLVGWAKQLHNDKQSHEILDPELITNLSGDAELYHYLKVAFECLDEKSYKRPTMIQVMTKFKEVQTDSESDILDGISVKGSILEESQEREP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="36464" PGL_stop="41786"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36464" e_stop="36608"/>
            <exon e_start="37560" e_stop="38057"/>
            <exon e_start="39585" e_stop="39773"/>
            <exon e_start="39850" e_stop="40712"/>
            <exon e_start="40815" e_stop="40973"/>
            <exon e_start="41069" e_stop="41786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.466" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.754" acc_prob="0.986" e_score="0.998"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36464" e_stop="36608" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.466" acc_prob="0.942">
            <gDNA_intron_boundary i_start="36609" i_stop="37559" i_length="951"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37560" e_stop="38057" e_length="498"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38058" i_stop="39584" i_length="1527"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39585" e_stop="39773" e_length="189"/>
          </exon>
          <intron i_serial="3" don_prob="0.953" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39774" i_stop="39849" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="39850" e_stop="40712" e_length="863"/>
          </exon>
          <intron i_serial="4" don_prob="0.754" acc_prob="0.986">
            <gDNA_intron_boundary i_start="40713" i_stop="40814" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40815" e_stop="40973" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="40974" i_stop="41068" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="41069" e_stop="41786" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36464" stop="36608"/>
              <exon start="37560" stop="38057"/>
              <exon start="39585" stop="39773"/>
              <exon start="39850" stop="40712"/>
              <exon start="40815" stop="40973"/>
              <exon start="41069" stop="41733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36477" stop="36608"/>
              <exon start="37560" stop="38057"/>
              <exon start="39585" stop="39617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36480" stop="36608"/>
              <exon start="37560" stop="37957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36485" stop="36608"/>
              <exon start="37560" stop="38057"/>
              <exon start="39585" stop="39759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39855" stop="40448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39897" stop="40410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40167" stop="40507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40168" stop="40530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40505" stop="40712"/>
              <exon start="40815" stop="40973"/>
              <exon start="41069" stop="41402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40505" stop="40712"/>
              <exon start="40815" stop="40973"/>
              <exon start="41069" stop="41248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40645" stop="40712"/>
              <exon start="40815" stop="40973"/>
              <exon start="41069" stop="41701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40645" stop="40712"/>
              <exon start="40815" stop="40973"/>
              <exon start="41069" stop="41699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40902" stop="40973"/>
              <exon start="41069" stop="41350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41084" stop="41730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41359" stop="41786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41414" stop="41786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAATCTTGTACCCAATCTAGCCCTTTTTCCACAGAGAGAGAAAAAGAGAGAGAAAGAGGGAGAAAGGATTGCTTTTGCTTTTTCCCATTTGTTTCTTGGAAGAAAGTCTGTGGGTGGAGTTGGGAAAAGAAAATAAATTCTAAG : TTAATTTGGCGTTTGAGTTGCTCATGATACTAGTATCAACAATTGATGGGTGGATTTGATGATCATGTTGCCATTATGGGAGATTGGATGCCTCCAAGTCCAAGTCCAAGAACGTTTTTCTCTTCACTGCTAGGCGATGATGGTGGGTCAAGATTATCGTTTGATGGCACCAATGAAACTAGTGGAAACTTAGCTTCTGGTCCTCAAGAACATGTTGGCAATTCAGATGGAGTTGATACAGCACCAGCTGCAATCAGTGAGCCACAACCGGTGAAGTTGAGTGTGCCGTCTGACCAGAAAATGAACTCTCGCGGAGGAGGACTCTTGGAAAGAATAGCAGCTAGAGCAGGATTTAATGCCCCAAAGCTGAACACGGAGAGCCTTAGACCTGCTGATCTGAGGCAGAATCAAGGAGTTCGCTCTCCTTATTTAACTATTCCTCCTGGTCTTAGTCCAACAACCCTGCTAGAGTCTCCTGTTTTTCTCTCCAATTCACTG : GTGCAACCATCCCCAACAACTGGAAAATTTCTATTTTCCTCAGGCATTGACAATAGAAACTCGGCATTGATGATGGAGGATACAGATAAAAGGAAAGATAATGCTTTAGAGAGTATCAATTCATCATCCTTTTCTTTCAAGCCAGTTCCAGAGACTGCTCCATCTCTTTTTCCTGGCACGACCAGCAGA : TCTTGGTTGCAGGTGAACCCGTCCAATTTTTCTCAGCAAGGATTTCCAAACATTGAAGTTTCGGTTCATTCCCAGAATTCGCTTGTATCTCACCGTGTGGAAGCTACACAAAACCCGACTCAGAATGGAACGCTTCAGCAATCATCTGATTTCCCTAGATTTTCTGCTGAGAAGGATGTCATGGCTAATAATGTTACCCTAGATTCTAGGACTTTTCAGACAGTTGGTAGTGCTGTGGACCATTCTCCACCTCTCGATGAACCGCAAGATGAGGACATTGATCAAAGAGGAGGTGGAGATCCAAATGTTGCTGGTGCCCCAGCTGAAGATGGTTATAATTGGCGAAAATATGGGCAGAAACAAGTTAAGGGGAGCGAGTACCCCCGAAGTTATTACAAGTGCACACATCCAACCTGTCCAGTCAAGAAGAAAGTGGAGCGATCTCCAGAGGGTCATATTACTGAGATTATATACAAGGGAGCCCACAATCACCCAAAACCCCCACCTAACCGTAGATCAGCCCTTGGATCCACAAATTCACTTGGTGACCTACAGGTGGACGGTGCAGAACAAGGTGCAAGTGGTGTTAATGGTGATCTCGGTCAGGCAAACTTCCACAAAGCACCTGGTGGTGGAGGAGGTTTTGATTGGAGGAACAACAATCGTGATGCAAACTTGGGCTCCGAGCACTGCAACAGATCTGCCCCTTTCTCTGCTCAGAATAACACTCGTTTGGAATCAGGTGATGCAGTAGATGTGTCGTCGAATTTTTCAAATGATGAAGATGAAGATGATCGTGGAACTCATGGCAGCGTATCACAAGGTTATGAGGGTGAAGGAGATGAGTCCGAGTCTAAAAGAAG : GAAGCTTGAGACCTACTCTGCAGATATGACTGGTGCTACTAGAGCCATCAGGGAGCCAAGAGTTGTGGTTCAAACTACAAGCGAAGTGGACATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAAAAGGTTGTCAAAGGGAATCCAAATCCAAG : GAGTTACTACAAGTGCACAAGTGCTGGCTGCAATGTCAGGAAGCATGTTGAGAGGGCCTCGCATGACCTGAAGTCAGTGATTACCACCTACGAAGGGAAGCACAACCACGACGTTCCTGCAGCTCGCAACAGTAGTCATGTTAATTCAGGTGCCTCCAACACTCATCCAGCTTCAGTTACTGCCCCTGCTCAAAACCATTTACATAGGCCGGAGGCTGCTCAACTTCAGAATGCTATGGCGCGATTTGACAGGCAACCTTCATTGGGCTCATTTGGTCTGTCAGGGAGGCCCCCCCAGCTTGGACCTAACCCAGGATTTAGCTATGGAATGAACCAGCAAGGCGGCCTATCCAGTCTAGCAATGGCCGGATTTCATCCTAATCAAAACAAGCCAGGGGAGGTTCCTATGCATCCATATCTAGGACAGCCGCGACCCATGCATGATATGGGATTTATGTTCCCAAAGGAAGAACCAAAGGTGGAACCTCTGTCAGATCCTGGCCCAACAGCTTATCAGCAATTTTTGAACAGTTTGTCGCTTGGACCTCAGATGTAAATTTACAGTTTTTGTCTTCTCTAAAGAACAGAAAGTTAGAGATGCTGATTTTGGTACTTAATGGGCATACCTCCCTACACAGAGTCCTATAATACAACTTTTTGAAGCTATATTGTCTTTGTTTTAACTTCTAAATACCATATAGGCCGCCACTCATTTGAC</gDNA_template>
            <first_frame> I  I  L  Y  P  I  *  P  F  F  H  R  E  R  K  R  E  R  K  R  E  K  G  L  L  L  L  F  P  I  C  F  L  E  E  S  L  W  V  E  L  G  K  E  N  K  F  *   : V  N  L  A  F  E  L  L  M  I  L  V  S  T  I  D  G  W  I  *  *  S  C  C  H  Y  G  R  L  D  A  S  K  S  K  S  K  N  V  F  L  F  T  A  R  R  *  W  W  V  K  I  I  V  *  W  H  Q  *  N  *  W  K  L  S  F  W  S  S  R  T  C  W  Q  F  R  W  S  *  Y  S  T  S  C  N  Q  *  A  T  T  G  E  V  E  C  A  V  *  P  E  N  E  L  S  R  R  R  T  L  G  K  N  S  S  *  S  R  I  *  C  P  K  A  E  H  G  E  P  *  T  C  *  S  E  A  E  S  R  S  S  L  S  L  F  N  Y  S  S  W  S  *  S  N  N  P  A  R  V  S  C  F  S  L  Q  F  T   : G  A  T  I  P  N  N  W  K  I  S  I  F  L  R  H  *  Q  *  K  L  G  I  D  D  G  G  Y  R  *  K  E  R  *  C  F  R  E  Y  Q  F  I  I  L  F  F  Q  A  S  S  R  D  C  S  I  S  F  S  W  H  D  Q  Q   : I  L  V  A  G  E  P  V  Q  F  F  S  A  R  I  S  K  H  *  S  F  G  S  F  P  E  F  A  C  I  S  P  C  G  S  Y  T  K  P  D  S  E  W  N  A  S  A  I  I  *  F  P  *  I  F  C  *  E  G  C  H  G  *  *  C  Y  P  R  F  *  D  F  S  D  S  W  *  C  C  G  P  F  S  T  S  R  *  T  A  R  *  G  H  *  S  K  R  R  W  R  S  K  C  C  W  C  P  S  *  R  W  L  *  L  A  K  I  W  A  E  T  S  *  G  E  R  V  P  P  K  L  L  Q  V  H  T  S  N  L  S  S  Q  E  E  S  G  A  I  S  R  G  S  Y  Y  *  D  Y  I  Q  G  S  P  Q  S  P  K  T  P  T  *  P  *  I  S  P  W  I  H  K  F  T  W  *  P  T  G  G  R  C  R  T  R  C  K  W  C  *  W  *  S  R  S  G  K  L  P  Q  S  T  W  W  W  R  R  F  *  L  E  E  Q  Q  S  *  C  K  L  G  L  R  A  L  Q  Q  I  C  P  F  L  C  S  E  *  H  S  F  G  I  R  *  C  S  R  C  V  V  E  F  F  K  *  *  R  *  R  *  S  W  N  S  W  Q  R  I  T  R  L  *  G  *  R  R  *  V  R  V  *  K  K  :  E  A  *  D  L  L  C  R  Y  D  W  C  Y  *  S  H  Q  G  A  K  S  C  G  S  N  Y  K  R  S  G  H  P  *  *  W  I  S  L  A  Q  V  W  A  K  G  C  Q  R  E  S  K  S  K  :  E  L  L  Q  V  H  K  C  W  L  Q  C  Q  E  A  C  *  E  G  L  A  *  P  E  V  S  D  Y  H  L  R  R  E  A  Q  P  R  R  S  C  S  S  Q  Q  *  S  C  *  F  R  C  L  Q  H  S  S  S  F  S  Y  C  P  C  S  K  P  F  T  *  A  G  G  C  S  T  S  E  C  Y  G  A  I  *  Q  A  T  F  I  G  L  I  W  S  V  R  E  A  P  P  A  W  T  *  P  R  I  *  L  W  N  E  P  A  R  R  P  I  Q  S  S  N  G  R  I  S  S  *  S  K  Q  A  R  G  G  S  Y  A  S  I  S  R  T  A  A  T  H  A  *  Y  G  I  Y  V  P  K  G  R  T  K  G  G  T  S  V  R  S  W  P  N  S  L  S  A  I  F  E  Q  F  V  A  W  T  S  D  V  N  L  Q  F  L  S  S  L  K  N  R  K  L  E  M  L  I  L  V  L  N  G  H  T  S  L  H  R  V  L  *  Y  N  F  L  K  L  Y  C  L  C  F  N  F  *  I  P  Y  R  P  P  L  I  *  </first_frame>
            <second_frame>  *  S  C  T  Q  S  S  P  F  S  T  E  R  E  K  E  R  E  R  G  R  K  D  C  F  C  F  F  P  F  V  S  W  K  K  V  C  G  W  S  W  E  K  K  I  N  S  K  :  L  I  W  R  L  S  C  S  *  Y  *  Y  Q  Q  L  M  G  G  F  D  D  H  V  A  I  M  G  D  W  M  P  P  S  P  S  P  R  T  F  F  S  S  L  L  G  D  D  G  G  S  R  L  S  F  D  G  T  N  E  T  S  G  N  L  A  S  G  P  Q  E  H  V  G  N  S  D  G  V  D  T  A  P  A  A  I  S  E  P  Q  P  V  K  L  S  V  P  S  D  Q  K  M  N  S  R  G  G  G  L  L  E  R  I  A  A  R  A  G  F  N  A  P  K  L  N  T  E  S  L  R  P  A  D  L  R  Q  N  Q  G  V  R  S  P  Y  L  T  I  P  P  G  L  S  P  T  T  L  L  E  S  P  V  F  L  S  N  S  L  :  V  Q  P  S  P  T  T  G  K  F  L  F  S  S  G  I  D  N  R  N  S  A  L  M  M  E  D  T  D  K  R  K  D  N  A  L  E  S  I  N  S  S  S  F  S  F  K  P  V  P  E  T  A  P  S  L  F  P  G  T  T  S  R  :  S  W  L  Q  V  N  P  S  N  F  S  Q  Q  G  F  P  N  I  E  V  S  V  H  S  Q  N  S  L  V  S  H  R  V  E  A  T  Q  N  P  T  Q  N  G  T  L  Q  Q  S  S  D  F  P  R  F  S  A  E  K  D  V  M  A  N  N  V  T  L  D  S  R  T  F  Q  T  V  G  S  A  V  D  H  S  P  P  L  D  E  P  Q  D  E  D  I  D  Q  R  G  G  G  D  P  N  V  A  G  A  P  A  E  D  G  Y  N  W  R  K  Y  G  Q  K  Q  V  K  G  S  E  Y  P  R  S  Y  Y  K  C  T  H  P  T  C  P  V  K  K  K  V  E  R  S  P  E  G  H  I  T  E  I  I  Y  K  G  A  H  N  H  P  K  P  P  P  N  R  R  S  A  L  G  S  T  N  S  L  G  D  L  Q  V  D  G  A  E  Q  G  A  S  G  V  N  G  D  L  G  Q  A  N  F  H  K  A  P  G  G  G  G  G  F  D  W  R  N  N  N  R  D  A  N  L  G  S  E  H  C  N  R  S  A  P  F  S  A  Q  N  N  T  R  L  E  S  G  D  A  V  D  V  S  S  N  F  S  N  D  E  D  E  D  D  R  G  T  H  G  S  V  S  Q  G  Y  E  G  E  G  D  E  S  E  S  K  R  R :   K  L  E  T  Y  S  A  D  M  T  G  A  T  R  A  I  R  E  P  R  V  V  V  Q  T  T  S  E  V  D  I  L  D  D  G  Y  R  W  R  K  Y  G  Q  K  V  V  K  G  N  P  N  P  R :   S  Y  Y  K  C  T  S  A  G  C  N  V  R  K  H  V  E  R  A  S  H  D  L  K  S  V  I  T  T  Y  E  G  K  H  N  H  D  V  P  A  A  R  N  S  S  H  V  N  S  G  A  S  N  T  H  P  A  S  V  T  A  P  A  Q  N  H  L  H  R  P  E  A  A  Q  L  Q  N  A  M  A  R  F  D  R  Q  P  S  L  G  S  F  G  L  S  G  R  P  P  Q  L  G  P  N  P  G  F  S  Y  G  M  N  Q  Q  G  G  L  S  S  L  A  M  A  G  F  H  P  N  Q  N  K  P  G  E  V  P  M  H  P  Y  L  G  Q  P  R  P  M  H  D  M  G  F  M  F  P  K  E  E  P  K  V  E  P  L  S  D  P  G  P  T  A  Y  Q  Q  F  L  N  S  L  S  L  G  P  Q  M  *  I  Y  S  F  C  L  L  *  R  T  E  S  *  R  C  *  F  W  Y  L  M  G  I  P  P  Y  T  E  S  Y  N  T  T  F  *  S  Y  I  V  F  V  L  T  S  K  Y  H  I  G  R  H  S  F  D </second_frame>
            <third_frame>   N  L  V  P  N  L  A  L  F  P  Q  R  E  K  K  R  E  K  E  G  E  R  I  A  F  A  F  S  H  L  F  L  G  R  K  S  V  G  G  V  G  K  R  K  *  I  L  S :   *  F  G  V  *  V  A  H  D  T  S  I  N  N  *  W  V  D  L  M  I  M  L  P  L  W  E  I  G  C  L  Q  V  Q  V  Q  E  R  F  S  L  H  C  *  A  M  M  V  G  Q  D  Y  R  L  M  A  P  M  K  L  V  E  T  *  L  L  V  L  K  N  M  L  A  I  Q  M  E  L  I  Q  H  Q  L  Q  S  V  S  H  N  R  *  S  *  V  C  R  L  T  R  K  *  T  L  A  E  E  D  S  W  K  E  *  Q  L  E  Q  D  L  M  P  Q  S  *  T  R  R  A  L  D  L  L  I  *  G  R  I  K  E  F  A  L  L  I  *  L  F  L  L  V  L  V  Q  Q  P  C  *  S  L  L  F  F  S  P  I  H  W :   C  N  H  P  Q  Q  L  E  N  F  Y  F  P  Q  A  L  T  I  E  T  R  H  *  *  W  R  I  Q  I  K  G  K  I  M  L  *  R  V  S  I  H  H  P  F  L  S  S  Q  F  Q  R  L  L  H  L  F  F  L  A  R  P  A  D :   L  G  C  R  *  T  R  P  I  F  L  S  K  D  F  Q  T  L  K  F  R  F  I  P  R  I  R  L  Y  L  T  V  W  K  L  H  K  T  R  L  R  M  E  R  F  S  N  H  L  I  S  L  D  F  L  L  R  R  M  S  W  L  I  M  L  P  *  I  L  G  L  F  R  Q  L  V  V  L  W  T  I  L  H  L  S  M  N  R  K  M  R  T  L  I  K  E  E  V  E  I  Q  M  L  L  V  P  Q  L  K  M  V  I  I  G  E  N  M  G  R  N  K  L  R  G  A  S  T  P  E  V  I  T  S  A  H  I  Q  P  V  Q  S  R  R  K  W  S  D  L  Q  R  V  I  L  L  R  L  Y  T  R  E  P  T  I  T  Q  N  P  H  L  T  V  D  Q  P  L  D  P  Q  I  H  L  V  T  Y  R  W  T  V  Q  N  K  V  Q  V  V  L  M  V  I  S  V  R  Q  T  S  T  K  H  L  V  V  E  E  V  L  I  G  G  T  T  I  V  M  Q  T  W  A  P  S  T  A  T  D  L  P  L  S  L  L  R  I  T  L  V  W  N  Q  V  M  Q  *  M  C  R  R  I  F  Q  M  M  K  M  K  M  I  V  E  L  M  A  A  Y  H  K  V  M  R  V  K  E  M  S  P  S  L  K  E   : G  S  L  R  P  T  L  Q  I  *  L  V  L  L  E  P  S  G  S  Q  E  L  W  F  K  L  Q  A  K  W  T  S  L  M  M  D  I  A  G  A  S  M  G  K  R  L  S  K  G  I  Q  I  Q   : G  V  T  T  S  A  Q  V  L  A  A  M  S  G  S  M  L  R  G  P  R  M  T  *  S  Q  *  L  P  P  T  K  G  S  T  T  T  T  F  L  Q  L  A  T  V  V  M  L  I  Q  V  P  P  T  L  I  Q  L  Q  L  L  P  L  L  K  T  I  Y  I  G  R  R  L  L  N  F  R  M  L  W  R  D  L  T  G  N  L  H  W  A  H  L  V  C  Q  G  G  P  P  S  L  D  L  T  Q  D  L  A  M  E  *  T  S  K  A  A  Y  P  V  *  Q  W  P  D  F  I  L  I  K  T  S  Q  G  R  F  L  C  I  H  I  *  D  S  R  D  P  C  M  I  W  D  L  C  S  Q  R  K  N  Q  R  W  N  L  C  Q  I  L  A  Q  Q  L  I  S  N  F  *  T  V  C  R  L  D  L  R  C  K  F  T  V  F  V  F  S  K  E  Q  K  V  R  D  A  D  F  G  T  *  W  A  Y  L  P  T  Q  S  P  I  I  Q  L  F  E  A  I  L  S  L  F  *  L  L  N  T  I  *  A  A  T  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37593" stop="38057"/>
                    <exon start="39585" stop="39773"/>
                    <exon start="39850" stop="40712"/>
                    <exon start="40815" stop="40973"/>
                    <exon start="41069" stop="41624"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2229</number_coding_nucleotides>
                  <number_encoded_amino_acids>743</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQQLMGGFDDHVAIMGDWMPPSPSPRTFFSSLLGDDGGSRLSFDGTNETSGNLASGPQEHVGNSDGVDTAPAAISEPQPVKLSVPSDQKMNSRGGGLLERIAARAGFNAPKLNTESLRPADLRQNQGVRSPYLTIPPGLSPTTLLESPVFLSNSLVQPSPTTGKFLFSSGIDNRNSALMMEDTDKRKDNALESINSSSFSFKPVPETAPSLFPGTTSRSWLQVNPSNFSQQGFPNIEVSVHSQNSLVSHRVEATQNPTQNGTLQQSSDFPRFSAEKDVMANNVTLDSRTFQTVGSAVDHSPPLDEPQDEDIDQRGGGDPNVAGAPAEDGYNWRKYGQKQVKGSEYPRSYYKCTHPTCPVKKKVERSPEGHITEIIYKGAHNHPKPPPNRRSALGSTNSLGDLQVDGAEQGASGVNGDLGQANFHKAPGGGGGFDWRNNNRDANLGSEHCNRSAPFSAQNNTRLESGDAVDVSSNFSNDEDEDDRGTHGSVSQGYEGEGDESESKRRKLETYSADMTGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHVNSGASNTHPASVTAPAQNHLHRPEAAQLQNAMARFDRQPSLGSFGLSGRPPQLGPNPGFSYGMNQQGGLSSLAMAGFHPNQNKPGEVPMHPYLGQPRPMHDMGFMFPKEEPKVEPLSDPGPTAYQQFLNSLSLGPQM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36650" e_stop="36724"/>
            <exon e_start="37560" e_stop="38044"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.282" acc_prob="0.942" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36650" e_stop="36724" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.282" acc_prob="0.942">
            <gDNA_intron_boundary i_start="36725" i_stop="37559" i_length="835"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37560" e_stop="38044" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36650" stop="36724"/>
              <exon start="37560" stop="38044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTCCATTTTATCATTCTTTTTTTTTGACTCTCTCTTCTTTTTTTTTGATATATATATATATGTTTGTTCAG : TTAATTTGGCGTTTGAGTTGCTCATGATACTAGTATCAACAATTGATGGGTGGATTTGATGATCATGTTGCCATTATGGGAGATTGGATGCCTCCAAGTCCAAGTCCAAGAACGTTTTTCTCTTCACTGCTAGGCGATGATGGTGGGTCAAGATTATCGTTTGATGGCACCAATGAAACTAGTGGAAACTTAGCTTCTGGTCCTCAAGAACATGTTGGCAATTCAGATGGAGTTGATACAGCACCAGCTGCAATCAGTGAGCCACAACCGGTGAAGTTGAGTGTGCCGTCTGACCAGAAAATGAACTCTCGCGGAGGAGGACTCTTGGAAAGAATAGCAGCTAGAGCAGGATTTAATGCCCCAAAGCTGAACACGGAGAGCCTTAGACCTGCTGATCTGAGGCAGAATCAAGGAGTTCGCTCTCCTTATTTAACTATTCCTCCTGGTCTTAGTCCAACAACCCTGCTAGAGTCTCCTGTTTTTCT</gDNA_template>
            <first_frame> F  L  P  F  Y  H  S  F  F  L  T  L  S  S  F  F  L  I  Y  I  Y  M  F  V  Q  :  L  I  W  R  L  S  C  S  *  Y  *  Y  Q  Q  L  M  G  G  F  D  D  H  V  A  I  M  G  D  W  M  P  P  S  P  S  P  R  T  F  F  S  S  L  L  G  D  D  G  G  S  R  L  S  F  D  G  T  N  E  T  S  G  N  L  A  S  G  P  Q  E  H  V  G  N  S  D  G  V  D  T  A  P  A  A  I  S  E  P  Q  P  V  K  L  S  V  P  S  D  Q  K  M  N  S  R  G  G  G  L  L  E  R  I  A  A  R  A  G  F  N  A  P  K  L  N  T  E  S  L  R  P  A  D  L  R  Q  N  Q  G  V  R  S  P  Y  L  T  I  P  P  G  L  S  P  T  T  L  L  E  S  P  V  F   </first_frame>
            <second_frame>  F  F  H  F  I  I  L  F  F  *  L  S  L  L  F  F  *  Y  I  Y  I  C  L  F  S :   *  F  G  V  *  V  A  H  D  T  S  I  N  N  *  W  V  D  L  M  I  M  L  P  L  W  E  I  G  C  L  Q  V  Q  V  Q  E  R  F  S  L  H  C  *  A  M  M  V  G  Q  D  Y  R  L  M  A  P  M  K  L  V  E  T  *  L  L  V  L  K  N  M  L  A  I  Q  M  E  L  I  Q  H  Q  L  Q  S  V  S  H  N  R  *  S  *  V  C  R  L  T  R  K  *  T  L  A  E  E  D  S  W  K  E  *  Q  L  E  Q  D  L  M  P  Q  S  *  T  R  R  A  L  D  L  L  I  *  G  R  I  K  E  F  A  L  L  I  *  L  F  L  L  V  L  V  Q  Q  P  C  *  S  L  L  F  F  </second_frame>
            <third_frame>   S  S  I  L  S  F  F  F  F  D  S  L  F  F  F  F  D  I  Y  I  Y  V  C  S   : V  N  L  A  F  E  L  L  M  I  L  V  S  T  I  D  G  W  I  *  *  S  C  C  H  Y  G  R  L  D  A  S  K  S  K  S  K  N  V  F  L  F  T  A  R  R  *  W  W  V  K  I  I  V  *  W  H  Q  *  N  *  W  K  L  S  F  W  S  S  R  T  C  W  Q  F  R  W  S  *  Y  S  T  S  C  N  Q  *  A  T  T  G  E  V  E  C  A  V  *  P  E  N  E  L  S  R  R  R  T  L  G  K  N  S  S  *  S  R  I  *  C  P  K  A  E  H  G  E  P  *  T  C  *  S  E  A  E  S  R  S  S  L  S  L  F  N  Y  S  S  W  S  *  S  N  N  P  A  R  V  S  C  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37593" stop="38042"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQQLMGGFDDHVAIMGDWMPPSPSPRTFFSSLLGDDGGSRLSFDGTNETSGNLASGPQEHVGNSDGVDTAPAAISEPQPVKLSVPSDQKMNSRGGGLLERIAARAGFNAPKLNTESLRPADLRQNQGVRSPYLTIPPGLSPTTLLESPVF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41967" PGL_stop="41505"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41967" e_stop="41505"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="41967" e_stop="41505" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41967" stop="41505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTGTTGAAACTTTTTTTCTTAAATATAAGAGCAAGGCCATCATTGTGCGTTTTAGGCAAAAGAACAAATACACGGAGGAGGACATAAACCTTAGCCTCCAAAATACGATAGGACATGGAACTTTTCCATGTTACAACCTGAAACTGTTTGTCAGTATAGCAAGAAGCTGAAGCACAAACGTCAAATGAGTGGCGGCCTATATGGTATTTAGAAGTTAAAACAAAGACAATATAGCTTCAAAAAGTTGTATTATAGGACTCTGTGTAGGGAGGTATGCCCATTAAGTACCAAAATCAGCATCTCTAACTTTCTGTTCTTTAGAGAAGACAAAAACTGTAAATTTACATCTGAGGTCCAAGCGACAAACTGTTCAAAAATTGCTGATAAGCTGTTGGGCCAGGATCTGACAGAGGTTCCACCTTTGGTTCTTCCTTTGGGAACATAAATCCCATATCATGCAT</gDNA_template>
            <first_frame> S  C  *  N  F  F  S  *  I  *  E  Q  G  H  H  C  A  F  *  A  K  E  Q  I  H  G  G  G  H  K  P  *  P  P  K  Y  D  R  T  W  N  F  S  M  L  Q  P  E  T  V  C  Q  Y  S  K  K  L  K  H  K  R  Q  M  S  G  G  L  Y  G  I  *  K  L  K  Q  R  Q  Y  S  F  K  K  L  Y  Y  R  T  L  C  R  E  V  C  P  L  S  T  K  I  S  I  S  N  F  L  F  F  R  E  D  K  N  C  K  F  T  S  E  V  Q  A  T  N  C  S  K  I  A  D  K  L  L  G  Q  D  L  T  E  V  P  P  L  V  L  P  L  G  T  *  I  P  Y  H  A  </first_frame>
            <second_frame>  L  V  E  T  F  F  L  K  Y  K  S  K  A  I  I  V  R  F  R  Q  K  N  K  Y  T  E  E  D  I  N  L  S  L  Q  N  T  I  G  H  G  T  F  P  C  Y  N  L  K  L  F  V  S  I  A  R  S  *  S  T  N  V  K  *  V  A  A  Y  M  V  F  R  S  *  N  K  D  N  I  A  S  K  S  C  I  I  G  L  C  V  G  R  Y  A  H  *  V  P  K  S  A  S  L  T  F  C  S  L  E  K  T  K  T  V  N  L  H  L  R  S  K  R  Q  T  V  Q  K  L  L  I  S  C  W  A  R  I  *  Q  R  F  H  L  W  F  F  L  W  E  H  K  S  H  I  M  H </second_frame>
            <third_frame>   L  L  K  L  F  F  L  N  I  R  A  R  P  S  L  C  V  L  G  K  R  T  N  T  R  R  R  T  *  T  L  A  S  K  I  R  *  D  M  E  L  F  H  V  T  T  *  N  C  L  S  V  *  Q  E  A  E  A  Q  T  S  N  E  W  R  P  I  W  Y  L  E  V  K  T  K  T  I  *  L  Q  K  V  V  L  *  D  S  V  *  G  G  M  P  I  K  Y  Q  N  Q  H  L  *  L  S  V  L  *  R  R  Q  K  L  *  I  Y  I  *  G  P  S  D  K  L  F  K  N  C  *  *  A  V  G  P  G  S  D  R  G  S  T  F  G  S  S  F  G  N  I  N  P  I  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41754" stop="41521"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKQRQYSFKKLYYRTLCREVCPLSTKISISNFLFFREDKNCKFTSEVQATNCSKIADKLLGQDLTEVPPLVLPLGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="51239" PGL_stop="42448"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51239" e_stop="50697"/>
            <exon e_start="49994" e_stop="49592"/>
            <exon e_start="48795" e_stop="48601"/>
            <exon e_start="47421" e_stop="46967"/>
            <exon e_start="46873" e_stop="46769"/>
            <exon e_start="44811" e_stop="44581"/>
            <exon e_start="44420" e_stop="44208"/>
            <exon e_start="44057" e_stop="43825"/>
            <exon e_start="43037" e_stop="42448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="0.998"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.746" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.723" e_score="1.000"/>
          <exon-intron don_prob="0.586" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="51239" e_stop="50697" e_length="543"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="50696" i_stop="49995" i_length="702"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49994" e_stop="49592" e_length="403"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="49591" i_stop="48796" i_length="796"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48795" e_stop="48601" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.954">
            <gDNA_intron_boundary i_start="48600" i_stop="47422" i_length="1179"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47421" e_stop="46967" e_length="455"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.983">
            <gDNA_intron_boundary i_start="46966" i_stop="46874" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46873" e_stop="46769" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.746" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46768" i_stop="44812" i_length="1957"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44811" e_stop="44581" e_length="231"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.916">
            <gDNA_intron_boundary i_start="44580" i_stop="44421" i_length="160"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="44420" e_stop="44208" e_length="213"/>
          </exon>
          <intron i_serial="7" don_prob="0.947" acc_prob="0.723">
            <gDNA_intron_boundary i_start="44207" i_stop="44058" i_length="150"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44057" e_stop="43825" e_length="233"/>
          </exon>
          <intron i_serial="8" don_prob="0.586" acc_prob="0.991">
            <gDNA_intron_boundary i_start="43824" i_stop="43038" i_length="787"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="43037" e_stop="42448" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51239" stop="50697"/>
              <exon start="49994" stop="49592"/>
              <exon start="48795" stop="48601"/>
              <exon start="47421" stop="46967"/>
              <exon start="46873" stop="46769"/>
              <exon start="44811" stop="44581"/>
              <exon start="44420" stop="44208"/>
              <exon start="44057" stop="43825"/>
              <exon start="43037" stop="42537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51152" stop="50697"/>
              <exon start="49994" stop="49592"/>
              <exon start="48795" stop="48601"/>
              <exon start="47421" stop="46967"/>
              <exon start="46873" stop="46769"/>
              <exon start="44811" stop="44581"/>
              <exon start="44420" stop="44208"/>
              <exon start="44057" stop="43825"/>
              <exon start="43037" stop="42448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47421" stop="46967"/>
              <exon start="46873" stop="46769"/>
              <exon start="44811" stop="44656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47421" stop="46967"/>
              <exon start="46873" stop="46802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47421" stop="46967"/>
              <exon start="46873" stop="46816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332926" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGGATATTTTGGGGATTAATCGCACTCTGTCCTCCACTTCCCGTCGTTAGTAGCTTAAAGTCGTAAAAAACTCGATTCCGGTAGCGACGGCGACAAGTTAACCTACTGAGAAGAAAGTTGTTAAATTTACACTCAATTTCGTAATGCATGCTGGTGGAATCGCCGGTTATCCTCCGACGAAAAGCCGGTGAAAAATTCCTCAGAAATGTCGGGAGGGGAGTACGGGGATCACAACATTTTGTTACGTTCTACTTCATCGGCGTCGGAAGGCGATGTGGAAAGCCAGTCATCGCCGAGGAGAACGAATACCAGAAGCATTAAGGATCTATTGAAGAGGTTAGATCGAGGATTTTCTGGTCGGCGATCATCGGATAGGGATCATCACCACTCCTCGTCGCCTTCGCCTTCTAATCGCCGCGGTGTTTCATCTACTGCGGATGAAATTCTAGGGGATAGTGCTCCGCCGGAATGGGCGATGTTGCTTGTTGGATGTCTCCTTGGCCTTGCTACTGGCCTTTGTGTTGCCGGGTTTAATCGAGGG : GTACATGTAATACATGAGTGGGCATGGGCTGGTACTCCTTATGACGGTGCTGCTTGGCTTCGTTTGCAAAGGCTAGCTGATACTTGGCATCGGATACTTTTAATACCAGTTTTGGGTGGAGTCATTGTTGGCATGTTGCATGGTCTGCTCGGAATATTGGACCAAATAACACAGTCTAGCTCTACTCAGGGACAAGGATTTGATTTGATTGCTGGAATCTTCCCTACAGTGAAGGCCACTCAAGCTGCTATAACTCTGGGCACTGGTTGTTCCTTGGGTCCTGAAGGTCCTAGTGTAGATATAGGGAAATCATGTGCCTATGGATGCTCAATGATGATGGAAAACAACCGGGAAAGAAGAATAGCTCTTATTGCAGCTGGTGCAGCTGCTGGAATTTCTTCAG : GTTTCAATGCAGCGGTAGCTGGCTCTTTCTTTGCAATTGAAACAGTTTTAAGACCACTCCGTGCTGAAAATTCACCCCCTTTTACAACTGCGATGATCATATTGGCTTCTGTTATATCATCAACTGTATCAAATGCAGTACTTGGGGAAAAACAGGCTTTCACAGTGCCCACGTATGATATGAAATCTGCTGCCG : AGCTTCCATTGTATTTGATACTGGGGATGCTGTGTGGAGTAGTAAGTGTTGTTTTCACTCGATTGGTGTCGTGGTTCACCAAGGGGTTTCAGTTCCTCAAGGAAAAGTTTGGACTTTCTGATGTTGTCTGCCCTGCTTTGGGGGGTTTAGGAGCTGGTGTAATAGCTCTGAGATATCCTGGAATTCTCTATTGGGGTTTCACTAATGTTGATGAAATCCTACATACTGGGAAAACTGCATCTGCACCTGGAATTGGATGGCTAGCTCAATTAGTTGCTGCAAAAGTCGTGGCCACTGCTTTGTGCAAAGGGTCTGGCCTTGTTGGTGGATTGTATGCACCAAGCTTAATGATAGGTGCTGCTGTAGGTGCTGTATTTGGAGGGTTAGCCGGGGAACTAATTAATTCAGCTATTCCAGGGAATGCTGCTATTGCCCAGCCGCAGGCATATGCACTG : GTGGGGATGGCTGCTACACTAGCTTCAGTTTGCTCAGTGCCTTTGACGTCAGTGCTTTTATTGTTTGAGTTGACAAAAGATTATAGAATTTTGCTTCCTCTCATG : GGTGCTGTTGGGCTGGCAATATGGGTGCCTTCCGTTACCGACCAGCCAAATGAAGCGGAGTCATCAGAAGCCAAGTTTGCATCAAAAGGTTACTCTATTCTTTCACCAACTGATGAAAATAATGAAGGGAATGGTTCGAGGCAATCTGGTGAGAGAAATAACTTGGAACTAATGGAGGTTCATAACAGTCATGAATCATTTGATGAAGGTCTCATTTTAGAAGATCTAAAG : GTTTCTCAGGCCATGTCAAATGATTATTTAAAGGTCTCTCCAAGCCAAACTGTGAAAGAAGCATTAGAATGCATGCATGACGGCCGACAGAGTTGCGTTCTTGTGGTTGATGCTGAAGGTTACTTGGAAGGAATTTTAACATATGGTGACGTGAAAAGGAGTTTGTTTAAGAACCATGGGGATTCTTCCAACAAAGATTTATCAGTCACAGAT : GCAAATACTTGTCTTGTGTCCTCTATATGCACAAAAGGGATAAGCTATCGTGGCCAAGATTGTGGACTCCTAACTTGTTATCCTGATACGGATCTAGCAATTGCAAAGCAACTAATGGAGGCAAAAGGAATTAAACAATTGCCTGTGGTCAAGCGTGGTGGAGAATTCAGAAGAGAAAGAAAGCGCAGAGTTATTGCTCTTCTGCATTATGATTCGGTAGAGGAGACGATCAG : GCGTGAAGTGAGTCACCGAAAGTCGGTCTACCAGCAGAATGAAGAAGAAAAAGATAAGCAGATCATAACGAATGGCCATTAATTGTTCAAGGTACTGTATATCACCAGCAAGTTTCAACAAGAAAATTTGTGTTTGTTCTACTTTGGCATCAATCTGAGTCTGGAAAGCAAGCTTCAACAAGAAATTACGATCTTAGTTGGTCATCAGTAGGTAATATCCAATTTACTGTATATTCTTGACTTAATTATGTGTGCAGAAGTTGAGGTTCCTTCCTGTTTGTTTCTGGAGCGAACATGCTGCACCAGGCTGCCAACAGAGCCAGAGAGCGTAATATCATGAGTTTTCCTCAAATAGTTTTAGTTGTACTTATCAGAAAGGCAGTTTTCGGTGTAAATTTGACATTTTGTACATGAAACATATGCTTGGTAGATCAAGGTAACACCAAAATGTGAAATCGTCATGGACTAATATATATACACAAATTGAGAGGTAACTAGCTGATATTGTATTCATATATGTATCTTTTGATATGTTAAAATTAATTTTACTATTGGGTGGGTTCCCTTTTTATCCATTTACACCTGTTGTT</gDNA_template>
            <first_frame> *  G  Y  F  G  D  *  S  H  S  V  L  H  F  P  S  L  V  A  *  S  R  K  K  L  D  S  G  S  D  G  D  K  L  T  Y  *  E  E  S  C  *  I  Y  T  Q  F  R  N  A  C  W  W  N  R  R  L  S  S  D  E  K  P  V  K  N  S  S  E  M  S  G  G  E  Y  G  D  H  N  I  L  L  R  S  T  S  S  A  S  E  G  D  V  E  S  Q  S  S  P  R  R  T  N  T  R  S  I  K  D  L  L  K  R  L  D  R  G  F  S  G  R  R  S  S  D  R  D  H  H  H  S  S  S  P  S  P  S  N  R  R  G  V  S  S  T  A  D  E  I  L  G  D  S  A  P  P  E  W  A  M  L  L  V  G  C  L  L  G  L  A  T  G  L  C  V  A  G  F  N  R  G  :  V  H  V  I  H  E  W  A  W  A  G  T  P  Y  D  G  A  A  W  L  R  L  Q  R  L  A  D  T  W  H  R  I  L  L  I  P  V  L  G  G  V  I  V  G  M  L  H  G  L  L  G  I  L  D  Q  I  T  Q  S  S  S  T  Q  G  Q  G  F  D  L  I  A  G  I  F  P  T  V  K  A  T  Q  A  A  I  T  L  G  T  G  C  S  L  G  P  E  G  P  S  V  D  I  G  K  S  C  A  Y  G  C  S  M  M  M  E  N  N  R  E  R  R  I  A  L  I  A  A  G  A  A  A  G  I  S  S   : G  F  N  A  A  V  A  G  S  F  F  A  I  E  T  V  L  R  P  L  R  A  E  N  S  P  P  F  T  T  A  M  I  I  L  A  S  V  I  S  S  T  V  S  N  A  V  L  G  E  K  Q  A  F  T  V  P  T  Y  D  M  K  S  A  A   : E  L  P  L  Y  L  I  L  G  M  L  C  G  V  V  S  V  V  F  T  R  L  V  S  W  F  T  K  G  F  Q  F  L  K  E  K  F  G  L  S  D  V  V  C  P  A  L  G  G  L  G  A  G  V  I  A  L  R  Y  P  G  I  L  Y  W  G  F  T  N  V  D  E  I  L  H  T  G  K  T  A  S  A  P  G  I  G  W  L  A  Q  L  V  A  A  K  V  V  A  T  A  L  C  K  G  S  G  L  V  G  G  L  Y  A  P  S  L  M  I  G  A  A  V  G  A  V  F  G  G  L  A  G  E  L  I  N  S  A  I  P  G  N  A  A  I  A  Q  P  Q  A  Y  A  L  :  V  G  M  A  A  T  L  A  S  V  C  S  V  P  L  T  S  V  L  L  L  F  E  L  T  K  D  Y  R  I  L  L  P  L  M  :  G  A  V  G  L  A  I  W  V  P  S  V  T  D  Q  P  N  E  A  E  S  S  E  A  K  F  A  S  K  G  Y  S  I  L  S  P  T  D  E  N  N  E  G  N  G  S  R  Q  S  G  E  R  N  N  L  E  L  M  E  V  H  N  S  H  E  S  F  D  E  G  L  I  L  E  D  L  K  :  V  S  Q  A  M  S  N  D  Y  L  K  V  S  P  S  Q  T  V  K  E  A  L  E  C  M  H  D  G  R  Q  S  C  V  L  V  V  D  A  E  G  Y  L  E  G  I  L  T  Y  G  D  V  K  R  S  L  F  K  N  H  G  D  S  S  N  K  D  L  S  V  T  D  :  A  N  T  C  L  V  S  S  I  C  T  K  G  I  S  Y  R  G  Q  D  C  G  L  L  T  C  Y  P  D  T  D  L  A  I  A  K  Q  L  M  E  A  K  G  I  K  Q  L  P  V  V  K  R  G  G  E  F  R  R  E  R  K  R  R  V  I  A  L  L  H  Y  D  S  V  E  E  T  I  R :   R  E  V  S  H  R  K  S  V  Y  Q  Q  N  E  E  E  K  D  K  Q  I  I  T  N  G  H  *  L  F  K  V  L  Y  I  T  S  K  F  Q  Q  E  N  L  C  L  F  Y  F  G  I  N  L  S  L  E  S  K  L  Q  Q  E  I  T  I  L  V  G  H  Q  *  V  I  S  N  L  L  Y  I  L  D  L  I  M  C  A  E  V  E  V  P  S  C  L  F  L  E  R  T  C  C  T  R  L  P  T  E  P  E  S  V  I  S  *  V  F  L  K  *  F  *  L  Y  L  S  E  R  Q  F  S  V  *  I  *  H  F  V  H  E  T  Y  A  W  *  I  K  V  T  P  K  C  E  I  V  M  D  *  Y  I  Y  T  N  *  E  V  T  S  *  Y  C  I  H  I  C  I  F  *  Y  V  K  I  N  F  T  I  G  W  V  P  F  L  S  I  Y  T  C  C  </first_frame>
            <second_frame>  R  D  I  L  G  I  N  R  T  L  S  S  T  S  R  R  *  *  L  K  V  V  K  N  S  I  P  V  A  T  A  T  S  *  P  T  E  K  K  V  V  K  F  T  L  N  F  V  M  H  A  G  G  I  A  G  Y  P  P  T  K  S  R  *  K  I  P  Q  K  C  R  E  G  S  T  G  I  T  T  F  C  Y  V  L  L  H  R  R  R  K  A  M  W  K  A  S  H  R  R  G  E  R  I  P  E  A  L  R  I  Y  *  R  G  *  I  E  D  F  L  V  G  D  H  R  I  G  I  I  T  T  P  R  R  L  R  L  L  I  A  A  V  F  H  L  L  R  M  K  F  *  G  I  V  L  R  R  N  G  R  C  C  L  L  D  V  S  L  A  L  L  L  A  F  V  L  P  G  L  I  E  G :   Y  M  *  Y  M  S  G  H  G  L  V  L  L  M  T  V  L  L  G  F  V  C  K  G  *  L  I  L  G  I  G  Y  F  *  Y  Q  F  W  V  E  S  L  L  A  C  C  M  V  C  S  E  Y  W  T  K  *  H  S  L  A  L  L  R  D  K  D  L  I  *  L  L  E  S  S  L  Q  *  R  P  L  K  L  L  *  L  W  A  L  V  V  P  W  V  L  K  V  L  V  *  I  *  G  N  H  V  P  M  D  A  Q  *  *  W  K  T  T  G  K  E  E  *  L  L  L  Q  L  V  Q  L  L  E  F  L  Q  :  V  S  M  Q  R  *  L  A  L  S  L  Q  L  K  Q  F  *  D  H  S  V  L  K  I  H  P  L  L  Q  L  R  *  S  Y  W  L  L  L  Y  H  Q  L  Y  Q  M  Q  Y  L  G  K  N  R  L  S  Q  C  P  R  M  I  *  N  L  L  P  :  S  F  H  C  I  *  Y  W  G  C  C  V  E  *  *  V  L  F  S  L  D  W  C  R  G  S  P  R  G  F  S  S  S  R  K  S  L  D  F  L  M  L  S  A  L  L  W  G  V  *  E  L  V  *  *  L  *  D  I  L  E  F  S  I  G  V  S  L  M  L  M  K  S  Y  I  L  G  K  L  H  L  H  L  E  L  D  G  *  L  N  *  L  L  Q  K  S  W  P  L  L  C  A  K  G  L  A  L  L  V  D  C  M  H  Q  A  *  *  *  V  L  L  *  V  L  Y  L  E  G  *  P  G  N  *  L  I  Q  L  F  Q  G  M  L  L  L  P  S  R  R  H  M  H  W :   W  G  W  L  L  H  *  L  Q  F  A  Q  C  L  *  R  Q  C  F  Y  C  L  S  *  Q  K  I  I  E  F  C  F  L  S  W :   V  L  L  G  W  Q  Y  G  C  L  P  L  P  T  S  Q  M  K  R  S  H  Q  K  P  S  L  H  Q  K  V  T  L  F  F  H  Q  L  M  K  I  M  K  G  M  V  R  G  N  L  V  R  E  I  T  W  N  *  W  R  F  I  T  V  M  N  H  L  M  K  V  S  F  *  K  I  *  R :   F  L  R  P  C  Q  M  I  I  *  R  S  L  Q  A  K  L  *  K  K  H  *  N  A  C  M  T  A  D  R  V  A  F  L  W  L  M  L  K  V  T  W  K  E  F  *  H  M  V  T  *  K  G  V  C  L  R  T  M  G  I  L  P  T  K  I  Y  Q  S  Q  M :   Q  I  L  V  L  C  P  L  Y  A  Q  K  G  *  A  I  V  A  K  I  V  D  S  *  L  V  I  L  I  R  I  *  Q  L  Q  S  N  *  W  R  Q  K  E  L  N  N  C  L  W  S  S  V  V  E  N  S  E  E  K  E  S  A  E  L  L  L  F  C  I  M  I  R  *  R  R  R  S   : G  V  K  *  V  T  E  S  R  S  T  S  R  M  K  K  K  K  I  S  R  S  *  R  M  A  I  N  C  S  R  Y  C  I  S  P  A  S  F  N  K  K  I  C  V  C  S  T  L  A  S  I  *  V  W  K  A  S  F  N  K  K  L  R  S  *  L  V  I  S  R  *  Y  P  I  Y  C  I  F  L  T  *  L  C  V  Q  K  L  R  F  L  P  V  C  F  W  S  E  H  A  A  P  G  C  Q  Q  S  Q  R  A  *  Y  H  E  F  S  S  N  S  F  S  C  T  Y  Q  K  G  S  F  R  C  K  F  D  I  L  Y  M  K  H  M  L  G  R  S  R  *  H  Q  N  V  K  S  S  W  T  N  I  Y  T  Q  I  E  R  *  L  A  D  I  V  F  I  Y  V  S  F  D  M  L  K  L  I  L  L  L  G  G  F  P  F  Y  P  F  T  P  V  V </second_frame>
            <third_frame>   G  I  F  W  G  L  I  A  L  C  P  P  L  P  V  V  S  S  L  K  S  *  K  T  R  F  R  *  R  R  R  Q  V  N  L  L  R  R  K  L  L  N  L  H  S  I  S  *  C  M  L  V  E  S  P  V  I  L  R  R  K  A  G  E  K  F  L  R  N  V  G  R  G  V  R  G  S  Q  H  F  V  T  F  Y  F  I  G  V  G  R  R  C  G  K  P  V  I  A  E  E  N  E  Y  Q  K  H  *  G  S  I  E  E  V  R  S  R  I  F  W  S  A  I  I  G  *  G  S  S  P  L  L  V  A  F  A  F  *  S  P  R  C  F  I  Y  C  G  *  N  S  R  G  *  C  S  A  G  M  G  D  V  A  C  W  M  S  P  W  P  C  Y  W  P  L  C  C  R  V  *  S  R   : G  T  C  N  T  *  V  G  M  G  W  Y  S  L  *  R  C  C  L  A  S  F  A  K  A  S  *  Y  L  A  S  D  T  F  N  T  S  F  G  W  S  H  C  W  H  V  A  W  S  A  R  N  I  G  P  N  N  T  V  *  L  Y  S  G  T  R  I  *  F  D  C  W  N  L  P  Y  S  E  G  H  S  S  C  Y  N  S  G  H  W  L  F  L  G  S  *  R  S  *  C  R  Y  R  E  I  M  C  L  W  M  L  N  D  D  G  K  Q  P  G  K  K  N  S  S  Y  C  S  W  C  S  C  W  N  F  F  R :   F  Q  C  S  G  S  W  L  F  L  C  N  *  N  S  F  K  T  T  P  C  *  K  F  T  P  F  Y  N  C  D  D  H  I  G  F  C  Y  I  I  N  C  I  K  C  S  T  W  G  K  T  G  F  H  S  A  H  V  *  Y  E  I  C  C  R :   A  S  I  V  F  D  T  G  D  A  V  W  S  S  K  C  C  F  H  S  I  G  V  V  V  H  Q  G  V  S  V  P  Q  G  K  V  W  T  F  *  C  C  L  P  C  F  G  G  F  R  S  W  C  N  S  S  E  I  S  W  N  S  L  L  G  F  H  *  C  *  *  N  P  T  Y  W  E  N  C  I  C  T  W  N  W  M  A  S  S  I  S  C  C  K  S  R  G  H  C  F  V  Q  R  V  W  P  C  W  W  I  V  C  T  K  L  N  D  R  C  C  C  R  C  C  I  W  R  V  S  R  G  T  N  *  F  S  Y  S  R  E  C  C  Y  C  P  A  A  G  I  C  T   : G  G  D  G  C  Y  T  S  F  S  L  L  S  A  F  D  V  S  A  F  I  V  *  V  D  K  R  L  *  N  F  A  S  S  H   : G  C  C  W  A  G  N  M  G  A  F  R  Y  R  P  A  K  *  S  G  V  I  R  S  Q  V  C  I  K  R  L  L  Y  S  F  T  N  *  *  K  *  *  R  E  W  F  E  A  I  W  *  E  K  *  L  G  T  N  G  G  S  *  Q  S  *  I  I  *  *  R  S  H  F  R  R  S  K   : G  F  S  G  H  V  K  *  L  F  K  G  L  S  K  P  N  C  E  R  S  I  R  M  H  A  *  R  P  T  E  L  R  S  C  G  *  C  *  R  L  L  G  R  N  F  N  I  W  *  R  E  K  E  F  V  *  E  P  W  G  F  F  Q  Q  R  F  I  S  H  R   : C  K  Y  L  S  C  V  L  Y  M  H  K  R  D  K  L  S  W  P  R  L  W  T  P  N  L  L  S  *  Y  G  S  S  N  C  K  A  T  N  G  G  K  R  N  *  T  I  A  C  G  Q  A  W  W  R  I  Q  K  R  K  K  A  Q  S  Y  C  S  S  A  L  *  F  G  R  G  D  D  Q  :  A  *  S  E  S  P  K  V  G  L  P  A  E  *  R  R  K  R  *  A  D  H  N  E  W  P  L  I  V  Q  G  T  V  Y  H  Q  Q  V  S  T  R  K  F  V  F  V  L  L  W  H  Q  S  E  S  G  K  Q  A  S  T  R  N  Y  D  L  S  W  S  S  V  G  N  I  Q  F  T  V  Y  S  *  L  N  Y  V  C  R  S  *  G  S  F  L  F  V  S  G  A  N  M  L  H  Q  A  A  N  R  A  R  E  R  N  I  M  S  F  P  Q  I  V  L  V  V  L  I  R  K  A  V  F  G  V  N  L  T  F  C  T  *  N  I  C  L  V  D  Q  G  N  T  K  M  *  N  R  H  G  L  I  Y  I  H  K  L  R  G  N  *  L  I  L  Y  S  Y  M  Y  L  L  I  C  *  N  *  F  Y  Y  W  V  G  S  L  F  I  H  L  H  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51113" stop="50697"/>
                    <exon start="49994" stop="49592"/>
                    <exon start="48795" stop="48601"/>
                    <exon start="47421" stop="46967"/>
                    <exon start="46873" stop="46769"/>
                    <exon start="44811" stop="44581"/>
                    <exon start="44420" stop="44208"/>
                    <exon start="44057" stop="43825"/>
                    <exon start="43037" stop="42956"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2331</number_coding_nucleotides>
                  <number_encoded_amino_acids>777</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYTQFRNACWWNRRLSSDEKPVKNSSEMSGGEYGDHNILLRSTSSASEGDVESQSSPRRTNTRSIKDLLKRLDRGFSGRRSSDRDHHHSSSPSPSNRRGVSSTADEILGDSAPPEWAMLLVGCLLGLATGLCVAGFNRGVHVIHEWAWAGTPYDGAAWLRLQRLADTWHRILLIPVLGGVIVGMLHGLLGILDQITQSSSTQGQGFDLIAGIFPTVKATQAAITLGTGCSLGPEGPSVDIGKSCAYGCSMMMENNRERRIALIAAGAAAGISSGFNAAVAGSFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNAVLGEKQAFTVPTYDMKSAAELPLYLILGMLCGVVSVVFTRLVSWFTKGFQFLKEKFGLSDVVCPALGGLGAGVIALRYPGILYWGFTNVDEILHTGKTASAPGIGWLAQLVAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGLAGELINSAIPGNAAIAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTDQPNEAESSEAKFASKGYSILSPTDENNEGNGSRQSGERNNLELMEVHNSHESFDEGLILEDLKVSQAMSNDYLKVSPSQTVKEALECMHDGRQSCVLVVDAEGYLEGILTYGDVKRSLFKNHGDSSNKDLSVTDANTCLVSSICTKGISYRGQDCGLLTCYPDTDLAIAKQLMEAKGIKQLPVVKRGGEFRRERKRRVIALLHYDSVEETIRREVSHRKSVYQQNEEEKDKQIITNGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="61183" PGL_stop="62273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61183" e_stop="61267"/>
            <exon e_start="61657" e_stop="62273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.918"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="61183" e_stop="61267" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61268" i_stop="61656" i_length="389"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61657" e_stop="62273" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61183" stop="61267"/>
              <exon start="61657" stop="62273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61250" stop="61267"/>
              <exon start="61657" stop="62273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314835" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAGAAAGAAACATCACAACCTTCTGAAATCTGCTTCTCATACTAAAAAGTTTTGCTTGTCCAAGCCAGATCACTGTCCCAAG : ATTAAGAGTGGTCAAGAGAGCACCTTTTGTCCAAGAGAAAATGTTGACAAAATGGATTGCCTAAATAAGGACCTCAGATCTGCGGACCAGATGCTATCAAATGGATTGGCAACCATAAAACAATGGGCATGTTCAAAGAGAACTGGCCTCACAAGGAAGATCAGTGATAAGGACAATCATCAGCTTTCTGGCGCTGATATGTCGACTGGCGTGCAAAGTGACAATGATGTGTTGCCTCAGACTTATCCATTTAAAAAGAGAAGCGGTCTTGTGAAATCTCCAAGATCATCTGTTTGTTTGCCTGAGAGTAGCCAAAGAATGGGGAATATGCTACTTGATCAGCCTCAAGAAGAACGTAGCGAGGAACCACCTTCTCTACACAAGAAAGTGGTGGACTTTTCATCATCTCAATCTTCACTCCCATCTAACAAGAAGAGATCCCTAGTGTTACAAAGGTGCAAAGGAAAACATTTGAAGGTAGATGGCCATTCTGTGAACAATCATCCGAAAATGACTACAGGCCATGCACTTTCTGTGAAAAATGTGAGAGTTGGAAGAAACACAGATAACTACTCTGAGGTCAACTGTGAACAGTCCACCGCTCATCCATCATTCTC</gDNA_template>
            <first_frame> E  K  K  E  T  S  Q  P  S  E  I  C  F  S  Y  *  K  V  L  L  V  Q  A  R  S  L  S  Q   : D  *  E  W  S  R  E  H  L  L  S  K  R  K  C  *  Q  N  G  L  P  K  *  G  P  Q  I  C  G  P  D  A  I  K  W  I  G  N  H  K  T  M  G  M  F  K  E  N  W  P  H  K  E  D  Q  *  *  G  Q  S  S  A  F  W  R  *  Y  V  D  W  R  A  K  *  Q  *  C  V  A  S  D  L  S  I  *  K  E  K  R  S  C  E  I  S  K  I  I  C  L  F  A  *  E  *  P  K  N  G  E  Y  A  T  *  S  A  S  R  R  T  *  R  G  T  T  F  S  T  Q  E  S  G  G  L  F  I  I  S  I  F  T  P  I  *  Q  E  E  I  P  S  V  T  K  V  Q  R  K  T  F  E  G  R  W  P  F  C  E  Q  S  S  E  N  D  Y  R  P  C  T  F  C  E  K  C  E  S  W  K  K  H  R  *  L  L  *  G  Q  L  *  T  V  H  R  S  S  I  I  L </first_frame>
            <second_frame>  K  R  K  K  H  H  N  L  L  K  S  A  S  H  T  K  K  F  C  L  S  K  P  D  H  C  P  K  :  I  K  S  G  Q  E  S  T  F  C  P  R  E  N  V  D  K  M  D  C  L  N  K  D  L  R  S  A  D  Q  M  L  S  N  G  L  A  T  I  K  Q  W  A  C  S  K  R  T  G  L  T  R  K  I  S  D  K  D  N  H  Q  L  S  G  A  D  M  S  T  G  V  Q  S  D  N  D  V  L  P  Q  T  Y  P  F  K  K  R  S  G  L  V  K  S  P  R  S  S  V  C  L  P  E  S  S  Q  R  M  G  N  M  L  L  D  Q  P  Q  E  E  R  S  E  E  P  P  S  L  H  K  K  V  V  D  F  S  S  S  Q  S  S  L  P  S  N  K  K  R  S  L  V  L  Q  R  C  K  G  K  H  L  K  V  D  G  H  S  V  N  N  H  P  K  M  T  T  G  H  A  L  S  V  K  N  V  R  V  G  R  N  T  D  N  Y  S  E  V  N  C  E  Q  S  T  A  H  P  S  F   </second_frame>
            <third_frame>   K  E  R  N  I  T  T  F  *  N  L  L  L  I  L  K  S  F  A  C  P  S  Q  I  T  V  P  R :   L  R  V  V  K  R  A  P  F  V  Q  E  K  M  L  T  K  W  I  A  *  I  R  T  S  D  L  R  T  R  C  Y  Q  M  D  W  Q  P  *  N  N  G  H  V  Q  R  E  L  A  S  Q  G  R  S  V  I  R  T  I  I  S  F  L  A  L  I  C  R  L  A  C  K  V  T  M  M  C  C  L  R  L  I  H  L  K  R  E  A  V  L  *  N  L  Q  D  H  L  F  V  C  L  R  V  A  K  E  W  G  I  C  Y  L  I  S  L  K  K  N  V  A  R  N  H  L  L  Y  T  R  K  W  W  T  F  H  H  L  N  L  H  S  H  L  T  R  R  D  P  *  C  Y  K  G  A  K  E  N  I  *  R  *  M  A  I  L  *  T  I  I  R  K  *  L  Q  A  M  H  F  L  *  K  M  *  E  L  E  E  T  Q  I  T  T  L  R  S  T  V  N  S  P  P  L  I  H  H  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61184" stop="61267"/>
                    <exon start="61657" stop="62271"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRKKHHNLLKSASHTKKFCLSKPDHCPKIKSGQESTFCPRENVDKMDCLNKDLRSADQMLSNGLATIKQWACSKRTGLTRKISDKDNHQLSGADMSTGVQSDNDVLPQTYPFKKRSGLVKSPRSSVCLPESSQRMGNMLLDQPQEERSEEPPSLHKKVVDFSSSQSSLPSNKKRSLVLQRCKGKHLKVDGHSVNNHPKMTTGHALSVKNVRVGRNTDNYSEVNCEQSTAHPSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="64026" PGL_stop="64737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64026" e_stop="64737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64026" e_stop="64737" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64026" stop="64737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64141" stop="64735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGTACAGCCATCCCCTACATCTCCAGCCTCGTTTTTGTGTAAGAGCAGTGGCAGTGGATTGATGGGTGCCCCCTTTGGCAGACAAGACTATTTAGGTAGGGGCAACTTACATACTGTGCGAAATGGACCAAACGAGACATGTGATATGAAGAAGTTTGTAGCAACTCCCATCTCTCATTGGCAGAATGCAACTTCAGTTGGGCCAAATGCTGTCAGAGAAATTATTGTAATTGATGATTCTCCAGAAAACGAGGCTAATTCTCCATACACCATGAACTCAGGGAAAATGCAGATTAGCTCAGGCTATACCTCAAGGTTTGTGGATCTCTGTGAAAATAGACCGCGTGGTGAAACTGGAGCAGCTCAGAATGCAAATTTGCTTACTCAAGTGAATGAGCTTCCTGCTAAGACATGGAATGTCAACCCAGACGGTTGTAGTTTAGTTCATCCGAGCTCTTTCTCAGCTTCCTCATCACCTGCAGGTCCTTTTAGATCATCTTTATATTATTCTCCAGGTTTTTCATAACCAAGAAATCGTCTTTTACATCTTGACTGACAAAAGAAAACGCGGCAAAGTTGAGCAGATGAGTTTTTCTAGTTTGGGTTTTCGCTTTCATAGCGTTTGATGTTTACTCAAAACAGTACTGAAAGTTCCATAGATATATATAATATATATAAAGCAGTTTAATTACTGAAGCCAGTTGAAAGT</gDNA_template>
            <first_frame> T  S  T  A  I  P  Y  I  S  S  L  V  F  V  *  E  Q  W  Q  W  I  D  G  C  P  L  W  Q  T  R  L  F  R  *  G  Q  L  T  Y  C  A  K  W  T  K  R  D  M  *  Y  E  E  V  C  S  N  S  H  L  S  L  A  E  C  N  F  S  W  A  K  C  C  Q  R  N  Y  C  N  *  *  F  S  R  K  R  G  *  F  S  I  H  H  E  L  R  E  N  A  D  *  L  R  L  Y  L  K  V  C  G  S  L  *  K  *  T  A  W  *  N  W  S  S  S  E  C  K  F  A  Y  S  S  E  *  A  S  C  *  D  M  E  C  Q  P  R  R  L  *  F  S  S  S  E  L  F  L  S  F  L  I  T  C  R  S  F  *  I  I  F  I  L  F  S  R  F  F  I  T  K  K  S  S  F  T  S  *  L  T  K  E  N  A  A  K  L  S  R  *  V  F  L  V  W  V  F  A  F  I  A  F  D  V  Y  S  K  Q  Y  *  K  F  H  R  Y  I  *  Y  I  *  S  S  L  I  T  E  A  S  *  K  </first_frame>
            <second_frame>  Q  V  Q  P  S  P  T  S  P  A  S  F  L  C  K  S  S  G  S  G  L  M  G  A  P  F  G  R  Q  D  Y  L  G  R  G  N  L  H  T  V  R  N  G  P  N  E  T  C  D  M  K  K  F  V  A  T  P  I  S  H  W  Q  N  A  T  S  V  G  P  N  A  V  R  E  I  I  V  I  D  D  S  P  E  N  E  A  N  S  P  Y  T  M  N  S  G  K  M  Q  I  S  S  G  Y  T  S  R  F  V  D  L  C  E  N  R  P  R  G  E  T  G  A  A  Q  N  A  N  L  L  T  Q  V  N  E  L  P  A  K  T  W  N  V  N  P  D  G  C  S  L  V  H  P  S  S  F  S  A  S  S  S  P  A  G  P  F  R  S  S  L  Y  Y  S  P  G  F  S  *  P  R  N  R  L  L  H  L  D  *  Q  K  K  T  R  Q  S  *  A  D  E  F  F  *  F  G  F  S  L  S  *  R  L  M  F  T  Q  N  S  T  E  S  S  I  D  I  Y  N  I  Y  K  A  V  *  L  L  K  P  V  E  S </second_frame>
            <third_frame>   K  Y  S  H  P  L  H  L  Q  P  R  F  C  V  R  A  V  A  V  D  *  W  V  P  P  L  A  D  K  T  I  *  V  G  A  T  Y  I  L  C  E  M  D  Q  T  R  H  V  I  *  R  S  L  *  Q  L  P  S  L  I  G  R  M  Q  L  Q  L  G  Q  M  L  S  E  K  L  L  *  L  M  I  L  Q  K  T  R  L  I  L  H  T  P  *  T  Q  G  K  C  R  L  A  Q  A  I  P  Q  G  L  W  I  S  V  K  I  D  R  V  V  K  L  E  Q  L  R  M  Q  I  C  L  L  K  *  M  S  F  L  L  R  H  G  M  S  T  Q  T  V  V  V  *  F  I  R  A  L  S  Q  L  P  H  H  L  Q  V  L  L  D  H  L  Y  I  I  L  Q  V  F  H  N  Q  E  I  V  F  Y  I  L  T  D  K  R  K  R  G  K  V  E  Q  M  S  F  S  S  L  G  F  R  F  H  S  V  *  C  L  L  K  T  V  L  K  V  P  *  I  Y  I  I  Y  I  K  Q  F  N  Y  *  S  Q  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64027" stop="64554"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVQPSPTSPASFLCKSSGSGLMGAPFGRQDYLGRGNLHTVRNGPNETCDMKKFVATPISHWQNATSVGPNAVREIIVIDDSPENEANSPYTMNSGKMQISSGYTSRFVDLCENRPRGETGAAQNANLLTQVNELPAKTWNVNPDGCSLVHPSSFSASSSPAGPFRSSLYYSPGFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="77295" PGL_stop="81548"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77295" e_stop="77450"/>
            <exon e_start="78493" e_stop="78784"/>
            <exon e_start="80427" e_stop="81548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.943" e_score="0.994"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="77295" e_stop="77450" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.943">
            <gDNA_intron_boundary i_start="77451" i_stop="78492" i_length="1042"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78493" e_stop="78784" e_length="292"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="78785" i_stop="80426" i_length="1642"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="80427" e_stop="81548" e_length="1122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77295" stop="77450"/>
              <exon start="78493" stop="78784"/>
              <exon start="80427" stop="80559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77356" stop="77450"/>
              <exon start="78493" stop="78784"/>
              <exon start="80427" stop="80609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77374" stop="77450"/>
              <exon start="78493" stop="78784"/>
              <exon start="80427" stop="80716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78637" stop="78784"/>
              <exon start="80427" stop="80725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80634" stop="81324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80708" stop="81330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80708" stop="81324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80708" stop="81298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80709" stop="81330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80709" stop="81324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80882" stop="81548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321297" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAGATAATATACAAATTGGCTAGAAACAATAAAGATAGTTGCAACAGTTCAGGCGGCTATTAATTTCCCAAATTTGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTCTCTTGGAAATCCAGCAGAATAATGAATGAAAAG : GGTGACTTTGCTACAAGTAATGGTACAAAAGGTGAAAGGTCAATGAACTATGATGAAGAATCCAGTGATGAAGCTCAGGACAGAGAAAGGCCAATTGGTGAGGAACTTGGGGCTGGTCTCGAGAGAGGGAATGATAGGGAGTCTGAAAATGTGTCAAAAGAAGATCTAGCTGCTGAATCTCCGTGGGATGTTAATGAAGAGAAGAGTGAGAATCACGGTTCATCCACTGATCACGAGCCTCTAACGGAATCTATCTTCAACTTCCATGCTGCTCAAGAAGCTCTTGCTAGTG : AAATTCAGAAATTCAAAGAAATAGGGAAAGATACTAACTTTGGTCATTCACTTGAGGATGTTGGTATACCTTCAAATTTCACGTCAGATGACTCAGATTTTCCTAGATCAAGCACATCCGTGCTGTCACAGAACAGAGATGGTGCTCAAAGTTCTCTTAACTCCTTGGAGTCTGAAGTGTATAGCCTAAAGCAGAATATATTACTGTTGCAAAACCAGGTTCAGGAGGCAGCTGACCTGGCTAAATCCAAGGAAGCAAGAGTTACTGAACTTGAAGCCATTTTAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAAAAGGCTGTGCACTTTGAAGTTTTTTAACCTGGTCTCATATCAATACGACTTTAGACATTTCTGTTCGTGTGTGATGAACTATGTAATGGTCTAATTGGATTGTTGGAGTTGCAGAAACCTATACAACTTCAGACATTTCGGTTTGAAGTTGAAGCAAAAATGGTATGCACATGAAACATTCAACCACATGGTTGTTGAAGCTCATGTAGAAAAGCAAGCCTGAACTT</gDNA_template>
            <first_frame> R  R  *  Y  T  N  W  L  E  T  I  K  I  V  A  T  V  Q  A  A  I  N  F  P  N  L  F  P  I  L  G  F  P  *  S  Q  F  S  S  N  F  S  W  K  S  S  R  I  M  N  E  K  :  G  D  F  A  T  S  N  G  T  K  G  E  R  S  M  N  Y  D  E  E  S  S  D  E  A  Q  D  R  E  R  P  I  G  E  E  L  G  A  G  L  E  R  G  N  D  R  E  S  E  N  V  S  K  E  D  L  A  A  E  S  P  W  D  V  N  E  E  K  S  E  N  H  G  S  S  T  D  H  E  P  L  T  E  S  I  F  N  F  H  A  A  Q  E  A  L  A  S   : E  I  Q  K  F  K  E  I  G  K  D  T  N  F  G  H  S  L  E  D  V  G  I  P  S  N  F  T  S  D  D  S  D  F  P  R  S  S  T  S  V  L  S  Q  N  R  D  G  A  Q  S  S  L  N  S  L  E  S  E  V  Y  S  L  K  Q  N  I  L  L  L  Q  N  Q  V  Q  E  A  A  D  L  A  K  S  K  E  A  R  V  T  E  L  E  A  I  L  S  S  S  S  K  S  E  E  E  T  T  E  G  E  F  E  S  L  F  R  L  K  I  E  A  E  V  Q  Y  V  A  L  S  T  T  A  Q  K  L  R  S  A  A  V  Y  Q  L  T  L  L  E  E  Q  K  T  L  A  S  E  Q  A  Q  M  V  H  V  L  G  D  A  E  A  K  A  V  V  L  K  T  Q  T  K  K  L  E  T  Y  C  E  D  L  A  S  T  A  E  K  L  K  L  Q  K  K  V  C  K  Y  S  S  C  F  F  I  Q  L  V  L  L  A  V  V  V  G  L  F  L  M  Q  I  S  P  D  H  A  E  L  V  P  T  *  C  *  R  S  F  F  L  S  L  F  F  F  H  S  L  L  S  T  S  S  S  F  N  V  E  S  *  I  S  L  F  F  R  C  L  *  I  A  E  I  P  T  S  H  F  A  E  S  V  F  K  G  N  H  R  R  *  S  V  F  C  F  C  K  R  L  C  T  L  K  F  F  N  L  V  S  Y  Q  Y  D  F  R  H  F  C  S  C  V  M  N  Y  V  M  V  *  L  D  C  W  S  C  R  N  L  Y  N  F  R  H  F  G  L  K  L  K  Q  K  W  Y  A  H  E  T  F  N  H  M  V  V  E  A  H  V  E  K  Q  A  *  T  </first_frame>
            <second_frame>  G  D  N  I  Q  I  G  *  K  Q  *  R  *  L  Q  Q  F  R  R  L  L  I  S  Q  I  C  S  Q  F  *  G  F  H  N  L  N  S  L  R  I  S  L  G  N  P  A  E  *  *  M  K  R :   V  T  L  L  Q  V  M  V  Q  K  V  K  G  Q  *  T  M  M  K  N  P  V  M  K  L  R  T  E  K  G  Q  L  V  R  N  L  G  L  V  S  R  E  G  M  I  G  S  L  K  M  C  Q  K  K  I  *  L  L  N  L  R  G  M  L  M  K  R  R  V  R  I  T  V  H  P  L  I  T  S  L  *  R  N  L  S  S  T  S  M  L  L  K  K  L  L  L  V  :  K  F  R  N  S  K  K  *  G  K  I  L  T  L  V  I  H  L  R  M  L  V  Y  L  Q  I  S  R  Q  M  T  Q  I  F  L  D  Q  A  H  P  C  C  H  R  T  E  M  V  L  K  V  L  L  T  P  W  S  L  K  C  I  A  *  S  R  I  Y  Y  C  C  K  T  R  F  R  R  Q  L  T  W  L  N  P  R  K  Q  E  L  L  N  L  K  P  F  *  V  V  A  Q  R  V  K  K  R  L  L  K  V  S  S  R  V  S  S  D  *  K  L  K  L  K  F  S  M  W  H  C  Q  Q  Q  H  K  S  *  E  V  Q  Q  Y  I  N  L  P  S  W  K  N  R  R  H  *  L  Q  N  K  H  R  W  C  T  C  *  E  M  P  K  Q  R  L  *  C  S  R  H  K  P  R  S  W  K  L  T  V  K  I  *  Q  A  L  P  K  S  *  S  Y  R  R  K  S  V  S  T  V  R  V  F  S  Y  S  W  C  C  W  L  L  L  L  D  C  F  *  C  R  Y  L  L  I  M  L  N  L  Y  P  P  N  V  R  E  V  S  F  S  L  F  F  S  S  T  P  Y  Y  Q  H  R  H  P  S  M  L  K  V  R  L  V  C  F  L  D  V  Y  R  *  L  K  Y  L  L  L  I  L  L  S  L  Y  S  R  V  I  I  E  D  D  P  F  F  A  S  V  K  G  C  A  L  *  S  F  L  T  W  S  H  I  N  T  T  L  D  I  S  V  R  V  *  *  T  M  *  W  S  N  W  I  V  G  V  A  E  T  Y  T  T  S  D  I  S  V  *  S  *  S  K  N  G  M  H  M  K  H  S  T  T  W  L  L  K  L  M  *  K  S  K  P  E  L </second_frame>
            <third_frame>   E  I  I  Y  K  L  A  R  N  N  K  D  S  C  N  S  S  G  G  Y  *  F  P  K  F  V  P  N  S  R  V  S  I  I  S  I  L  F  E  F  L  L  E  I  Q  Q  N  N  E  *  K   : G  *  L  C  Y  K  *  W  Y  K  R  *  K  V  N  E  L  *  *  R  I  Q  *  *  S  S  G  Q  R  K  A  N  W  *  G  T  W  G  W  S  R  E  R  E  *  *  G  V  *  K  C  V  K  R  R  S  S  C  *  I  S  V  G  C  *  *  R  E  E  *  E  S  R  F  I  H  *  S  R  A  S  N  G  I  Y  L  Q  L  P  C  C  S  R  S  S  C  *  * :   N  S  E  I  Q  R  N  R  E  R  Y  *  L  W  S  F  T  *  G  C  W  Y  T  F  K  F  H  V  R  *  L  R  F  S  *  I  K  H  I  R  A  V  T  E  Q  R  W  C  S  K  F  S  *  L  L  G  V  *  S  V  *  P  K  A  E  Y  I  T  V  A  K  P  G  S  G  G  S  *  P  G  *  I  Q  G  S  K  S  Y  *  T  *  S  H  F  K  *  *  L  K  E  *  R  R  D  Y  *  R  *  V  R  E  S  L  Q  T  E  N  *  S  *  S  S  V  C  G  I  V  N  N  S  T  K  V  E  K  C  S  S  I  S  T  Y  P  L  G  R  T  E  D  T  S  F  R  T  S  T  D  G  A  R  A  R  R  C  R  S  K  G  C  S  A  Q  D  T  N  Q  E  V  G  N  L  L  *  R  F  S  K  H  C  R  K  A  K  A  T  E  E  S  L  *  V  Q  F  V  F  F  H  T  V  G  V  V  G  C  C  C  W  T  V  S  D  A  D  I  S  *  S  C  *  T  C  T  H  L  M  L  E  K  F  L  S  L  S  F  F  L  P  L  P  I  I  N  I  V  I  L  Q  C  *  K  L  D  *  F  V  F  *  M  S  I  D  S  *  N  T  Y  F  S  F  C  *  V  C  I  Q  G  *  S  *  K  M  I  R  F  L  L  L  *  K  A  V  H  F  E  V  F  *  P  G  L  I  S  I  R  L  *  T  F  L  F  V  C  D  E  L  C  N  G  L  I  G  L  L  E  L  Q  K  P  I  Q  L  Q  T  F  R  F  E  V  E  A  K  M  V  C  T  *  N  I  Q  P  H  G  C  *  S  S  C  R  K  A  S  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77397" stop="77450"/>
                    <exon start="78493" stop="78784"/>
                    <exon start="80427" stop="81130"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQFSSNFSWKSSRIMNEKGDFATSNGTKGERSMNYDEESSDEAQDRERPIGEELGAGLERGNDRESENVSKEDLAAESPWDVNEEKSENHGSSTDHEPLTESIFNFHAAQEALASEIQKFKEIGKDTNFGHSLEDVGIPSNFTSDDSDFPRSSTSVLSQNRDGAQSSLNSLESEVYSLKQNILLLQNQVQEAADLAKSKEARVTELEAILSSSSKSEEETTEGEFESLFRLKIEAEVQYVALSTTAQKLRSAAVYQLTLLEEQKTLASEQAQMVHVLGDAEAKAVVLKTQTKKLETYCEDLASTAEKLKLQKKVCKYSSCFFIQLVLLAVVVGLFLMQISPDHAELVPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77354" e_stop="78141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="77354" e_stop="78141" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77354" stop="78141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77362" stop="77903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266145" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTAATTTCCCAAATTTGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTCTCTTGGAAATCCAGCAGAATAATGAATGAAAAGGTACGCCCAGTTACTTAATTGCTTCTCCATTTCCTAATTTTTTGCATCTGCAGTACAAGTTTTTACAATGAACGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGTAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCTGGTGAAATCCTCTCCAATAACTAAGGGGTTTGGGTTGAAAAAATGGAAAAGGATGAAGCGGGATGCGCAGCGCCAGGATGGGGATAGTAGTGTTAACAGCGGTAAGCTGTTGAAACGGGGTTTGGCGAGTGAGTTTGCTAATGCAGAAAAACCTGCAACTTTTGCTGTGGGAAGGATCCAAAAAAGTGATGGATCTGTTTCATCAACGAATGCAGTATTCATGAATCCTGGAGTTCTG</gDNA_template>
            <first_frame> Y  *  F  P  K  F  V  P  N  S  R  V  S  I  I  S  I  L  F  E  F  L  L  E  I  Q  Q  N  N  E  *  K  G  T  P  S  Y  L  I  A  S  P  F  P  N  F  L  H  L  Q  Y  K  F  L  Q  *  T  N  S  I  L  F  N  M  M  I  F  Q  A  A  N  C  R  S  N  H  N  *  F  C  R  E  I  L  F  Q  L  L  S  V  S  W  N  D  G  W  *  F  S  I  L  I  W  V  R  K  K  G  L  I  L  I  Y  I  C  L  *  L  W  T  W  K  N  K  I  Q  L  I  I  R  K  *  S  H  H  Q  Y  L  K  M  L  I  K  A  R  *  K  V  V  M  G  L  V  L  L  G  I  I  A  V  I  I  I  W  M  M  *  K  A  R  E  L  T  L  K  R  L  R  I  I  Q  L  P  W  *  N  P  L  Q  *  L  R  G  L  G  *  K  N  G  K  G  *  S  G  M  R  S  A  R  M  G  I  V  V  L  T  A  V  S  C  *  N  G  V  W  R  V  S  L  L  M  Q  K  N  L  Q  L  L  L  W  E  G  S  K  K  V  M  D  L  F  H  Q  R  M  Q  Y  S  *  I  L  E  F   </first_frame>
            <second_frame>  I  N  F  P  N  L  F  P  I  L  G  F  P  *  S  Q  F  S  S  N  F  S  W  K  S  S  R  I  M  N  E  K  V  R  P  V  T  *  L  L  L  H  F  L  I  F  C  I  C  S  T  S  F  Y  N  E  R  I  Q  F  C  S  I  *  *  F  F  K  L  Q  I  V  E  A  I  I  I  D  F  V  E  K  F  C  F  N  C  Y  P  S  A  G  M  M  V  G  S  S  R  S  *  S  G  F  V  K  K  V  *  F  *  Y  I  F  V  S  S  Y  G  L  G  R  T  K  Y  S  *  *  *  G  N  D  H  T  T  N  I  *  K  C  *  S  K  Q  G  R  K  *  *  W  V  *  S  S  W  G  *  *  Q  *  *  *  F  G  *  C  E  R  Q  G  N  *  H  *  R  G  *  G  L  F  N  S  P  G  E  I  L  S  N  N  *  G  V  W  V  E  K  M  E  K  D  E  A  G  C  A  A  P  G  W  G  *  *  C  *  Q  R  *  A  V  E  T  G  F  G  E  *  V  C  *  C  R  K  T  C  N  F  C  C  G  K  D  P  K  K  *  W  I  C  F  I  N  E  C  S  I  H  E  S  W  S  S  </second_frame>
            <third_frame>   L  I  S  Q  I  C  S  Q  F  *  G  F  H  N  L  N  S  L  R  I  S  L  G  N  P  A  E  *  *  M  K  R  Y  A  Q  L  L  N  C  F  S  I  S  *  F  F  A  S  A  V  Q  V  F  T  M  N  E  F  N  F  V  Q  Y  D  D  F  S  S  C  K  L  S  K  Q  S  *  L  I  L  S  R  N  F  V  S  I  V  I  R  Q  L  E  *  W  L  V  V  L  D  L  D  L  G  S  *  K  R  F  N  F  N  I  Y  L  S  L  V  M  D  L  E  E  Q  N  T  A  N  N  K  E  M  I  T  P  P  I  F  E  N  A  N  Q  S  K  V  E  S  S  D  G  S  S  P  P  G  D  N  S  S  N  N  N  L  D  D  V  K  G  K  G  I  D  I  K  E  V  E  D  Y  S  T  P  L  V  K  S  S  P  I  T  K  G  F  G  L  K  K  W  K  R  M  K  R  D  A  Q  R  Q  D  G  D  S  S  V  N  S  G  K  L  L  K  R  G  L  A  S  E  F  A  N  A  E  K  P  A  T  F  A  V  G  R  I  Q  K  S  D  G  S  V  S  S  T  N  A  V  F  M  N  P  G  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77671" stop="78141"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRFNFNIYLSLVMDLEEQNTANNKEMITPPIFENANQSKVESSDGSSPPGDNSSNNNLDDVKGKGIDIKEVEDYSTPLVKSSPITKGFGLKKWKRMKRDAQRQDGDSSVNSGKLLKRGLASEFANAEKPATFAVGRIQKSDGSVSSTNAVFMNPGVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="84476" PGL_stop="87754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86897" e_stop="86913"/>
            <exon e_start="87143" e_stop="87687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.600"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.600">
            <gDNA_exon_boundary e_start="86897" e_stop="86913" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86914" i_stop="87142" i_length="229"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="87143" e_stop="87687" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86897" stop="86913"/>
              <exon start="87143" stop="87661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732434" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86899" stop="86913"/>
              <exon start="87143" stop="87687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734069" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86899" stop="86913"/>
              <exon start="87143" stop="87685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740988" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86899" stop="86913"/>
              <exon start="87143" stop="87685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738530" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86899" stop="86913"/>
              <exon start="87143" stop="87684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738663" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATTATTTTCTCTAAT : TACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTT</gDNA_template>
            <first_frame> V  L  F  S  L  I :   T  S  N  S  L  A  Q  N  H  M  N  F  T  *  N  Q  L  T  K  T  H  I  V  N  I  F  L  F  D  I  Q  P  K  K  L  G  S  Y  P  L  L  E  V  A  R  I  *  *  A  T  I  C  P  I  D  P  Q  A  S  T  S  T  I  L  N  P  T  G  S  F  D  F  N  K  L  I  Y  S  L  A  L  T  S  P  A  S  K  *  E  I  P  F  *  D  G  T  C  F  A  T  F  S  L  W  K  L  K  K  T  N  L  P  R  K  S  E  S  P  V  L  K  L  M  T  T  D  G  L  S  S  A  F  T  A  R  F  R  G  F  L  V  I  G  L  K  A  M  G  L  L  R  K  R  E  E  S  V  G  L  L  R  G  L  R  P  W  K  V  G  A  E  N  R  A  D  A  I  F  *  V  C  </first_frame>
            <second_frame>  Y  Y  F  L  *   : L  L  V  I  L  W  H  K  T  T  *  I  S  H  K  I  S  *  Q  K  H  I  *  *  I  Y  F  C  L  I  F  S  Q  R  N  W  D  H  I  H  C  *  K  *  Q  G  Y  N  K  Q  Q  Y  V  Q  *  I  P  K  Q  A  H  Q  Q  Y  *  I  Q  L  D  H  L  I  L  T  N  L  Y  I  P  *  P  *  H  L  Q  L  Q  S  E  K  F  H  S  E  M  A  P  V  S  L  H  F  L  S  G  N  *  R  K  R  T  F  Q  G  K  A  K  A  Q  C  S  N  *  *  Q  R  M  D  *  V  Q  L  S  Q  R  D  F  G  V  F  W  *  *  V  *  R  R  W  V  C  *  G  R  G  K  S  R  W  V  C  *  E  V  *  D  L  G  K  L  V  Q  K  T  E  L  M  P  F  F  E  F  V </second_frame>
            <third_frame>   I  I  F  S  N  :  Y  *  *  F  F  G  T  K  P  H  E  F  H  I  K  S  V  N  K  N  T  Y  S  K  Y  I  F  V  *  Y  S  A  K  E  T  G  I  I  S  I  A  R  S  S  K  D  I  I  S  N  N  M  S  N  R  S  P  S  K  H  I  N  N  I  E  S  N  W  I  I  *  F  *  Q  T  Y  I  F  L  S  P  N  I  S  S  F  K  V  R  N  S  I  L  R  W  H  L  F  R  Y  I  F  S  L  E  I  E  E  N  E  P  S  K  E  K  R  K  P  S  A  Q  T  D  D  N  G  W  I  E  F  S  F  H  S  E  I  S  G  F  F  G  D  R  F  E  G  D  G  F  V  E  E  E  G  R  V  G  G  F  V  E  R  S  E  T  L  E  S  W  C  R  K  Q  S  *  C  H  F  L  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87362" stop="87667"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTYIFLSPNISSFKVRNSILRWHLFRYIFSLEIEENEPSKEKRKPSAQTDDNGWIEFSFHSEISGFFGDRFEGDGFVEEEGRVGGFVERSETLESWCRKQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87423" stop="87680"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGTCFATFSLWKLKKTNLPRKSESPVLKLMTTDGLSSAFTARFRGFLVIGLKAMGLLRKREESVGLLRGLRPWKVGAENRADAIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86898" e_stop="86913"/>
            <exon e_start="87206" e_stop="87589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.625">
            <gDNA_exon_boundary e_start="86898" e_stop="86913" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86914" i_stop="87205" i_length="292"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87206" e_stop="87589" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86898" stop="86913"/>
              <exon start="87206" stop="87589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221023" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86898" stop="86913"/>
              <exon start="87206" stop="87581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220870" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTATTTTCTCTAAT : TATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTT</gDNA_template>
            <first_frame> Y  Y  F  L  *   : L  *  *  I  Y  F  C  L  I  F  S  Q  R  N  W  D  H  I  H  C  *  K  *  Q  G  Y  N  K  Q  Q  Y  V  Q  *  I  P  K  Q  A  H  Q  Q  Y  *  I  Q  L  D  H  L  I  L  T  N  L  Y  I  P  *  P  *  H  L  Q  L  Q  S  E  K  F  H  S  E  M  A  P  V  S  L  H  F  L  S  G  N  *  R  K  R  T  F  Q  G  K  A  K  A  Q  C  S  N  *  *  Q  R  M  D  *  V  Q  L  S  Q  R  D  F  G  V  F  W  *  *  V  *  R  R  W  V  </first_frame>
            <second_frame>  I  I  F  S  N  :  Y  S  K  Y  I  F  V  *  Y  S  A  K  E  T  G  I  I  S  I  A  R  S  S  K  D  I  I  S  N  N  M  S  N  R  S  P  S  K  H  I  N  N  I  E  S  N  W  I  I  *  F  *  Q  T  Y  I  F  L  S  P  N  I  S  S  F  K  V  R  N  S  I  L  R  W  H  L  F  R  Y  I  F  S  L  E  I  E  E  N  E  P  S  K  E  K  R  K  P  S  A  Q  T  D  D  N  G  W  I  E  F  S  F  H  S  E  I  S  G  F  F  G  D  R  F  E  G  D  G  F </second_frame>
            <third_frame>   L  F  S  L  I :   I  V  N  I  F  L  F  D  I  Q  P  K  K  L  G  S  Y  P  L  L  E  V  A  R  I  *  *  A  T  I  C  P  I  D  P  Q  A  S  T  S  T  I  L  N  P  T  G  S  F  D  F  N  K  L  I  Y  S  L  A  L  T  S  P  A  S  K  *  E  I  P  F  *  D  G  T  C  F  A  T  F  S  L  W  K  L  K  K  T  N  L  P  R  K  S  E  S  P  V  L  K  L  M  T  T  D  G  L  S  S  A  F  T  A  R  F  R  G  F  L  V  I  G  L  K  A  M  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87362" stop="87589"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTYIFLSPNISSFKVRNSILRWHLFRYIFSLEIEENEPSKEKRKPSAQTDDNGWIEFSFHSEISGFFGDRFEGDGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="84511" e_stop="84578"/>
            <exon e_start="87149" e_stop="87687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.000">
            <gDNA_exon_boundary e_start="84511" e_stop="84578" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84579" i_stop="87148" i_length="2570"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="87149" e_stop="87687" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84511" stop="84578"/>
              <exon start="87149" stop="87687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735476" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84515" stop="84578"/>
              <exon start="87149" stop="87687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735722" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG : TAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  C :   N  S  L  A  Q  N  H  M  N  F  T  *  N  Q  L  T  K  T  H  I  V  N  I  F  L  F  D  I  Q  P  K  K  L  G  S  Y  P  L  L  E  V  A  R  I  *  *  A  T  I  C  P  I  D  P  Q  A  S  T  S  T  I  L  N  P  T  G  S  F  D  F  N  K  L  I  Y  S  L  A  L  T  S  P  A  S  K  *  E  I  P  F  *  D  G  T  C  F  A  T  F  S  L  W  K  L  K  K  T  N  L  P  R  K  S  E  S  P  V  L  K  L  M  T  T  D  G  L  S  S  A  F  T  A  R  F  R  G  F  L  V  I  G  L  K  A  M  G  L  L  R  K  R  E  E  S  V  G  L  L  R  G  L  R  P  W  K  V  G  A  E  N  R  A  D  A  I  F  *  V  C  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : V  I  L  W  H  K  T  T  *  I  S  H  K  I  S  *  Q  K  H  I  *  *  I  Y  F  C  L  I  F  S  Q  R  N  W  D  H  I  H  C  *  K  *  Q  G  Y  N  K  Q  Q  Y  V  Q  *  I  P  K  Q  A  H  Q  Q  Y  *  I  Q  L  D  H  L  I  L  T  N  L  Y  I  P  *  P  *  H  L  Q  L  Q  S  E  K  F  H  S  E  M  A  P  V  S  L  H  F  L  S  G  N  *  R  K  R  T  F  Q  G  K  A  K  A  Q  C  S  N  *  *  Q  R  M  D  *  V  Q  L  S  Q  R  D  F  G  V  F  W  *  *  V  *  R  R  W  V  C  *  G  R  G  K  S  R  W  V  C  *  E  V  *  D  L  G  K  L  V  Q  K  T  E  L  M  P  F  F  E  F  V </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  :  *  F  F  G  T  K  P  H  E  F  H  I  K  S  V  N  K  N  T  Y  S  K  Y  I  F  V  *  Y  S  A  K  E  T  G  I  I  S  I  A  R  S  S  K  D  I  I  S  N  N  M  S  N  R  S  P  S  K  H  I  N  N  I  E  S  N  W  I  I  *  F  *  Q  T  Y  I  F  L  S  P  N  I  S  S  F  K  V  R  N  S  I  L  R  W  H  L  F  R  Y  I  F  S  L  E  I  E  E  N  E  P  S  K  E  K  R  K  P  S  A  Q  T  D  D  N  G  W  I  E  F  S  F  H  S  E  I  S  G  F  F  G  D  R  F  E  G  D  G  F  V  E  E  E  G  R  V  G  G  F  V  E  R  S  E  T  L  E  S  W  C  R  K  Q  S  *  C  H  F  L  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87362" stop="87667"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTYIFLSPNISSFKVRNSILRWHLFRYIFSLEIEENEPSKEKRKPSAQTDDNGWIEFSFHSEISGFFGDRFEGDGFVEEEGRVGGFVERSETLESWCRKQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87423" stop="87680"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGTCFATFSLWKLKKTNLPRKSESPVLKLMTTDGLSSAFTARFRGFLVIGLKAMGLLRKREESVGLLRGLRPWKVGAENRADAIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="84498" e_stop="84588"/>
            <exon e_start="87149" e_stop="87685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.636"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.636">
            <gDNA_exon_boundary e_start="84498" e_stop="84588" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84589" i_stop="87148" i_length="2560"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="87149" e_stop="87685" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84498" stop="84588"/>
              <exon start="87149" stop="87685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738149" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84501" stop="84588"/>
              <exon start="87149" stop="87685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734048" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTAATTTTT : TAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTG</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  I  N  F   : L  I  L  W  H  K  T  T  *  I  S  H  K  I  S  *  Q  K  H  I  *  *  I  Y  F  C  L  I  F  S  Q  R  N  W  D  H  I  H  C  *  K  *  Q  G  Y  N  K  Q  Q  Y  V  Q  *  I  P  K  Q  A  H  Q  Q  Y  *  I  Q  L  D  H  L  I  L  T  N  L  Y  I  P  *  P  *  H  L  Q  L  Q  S  E  K  F  H  S  E  M  A  P  V  S  L  H  F  L  S  G  N  *  R  K  R  T  F  Q  G  K  A  K  A  Q  C  S  N  *  *  Q  R  M  D  *  V  Q  L  S  Q  R  D  F  G  V  F  W  *  *  V  *  R  R  W  V  C  *  G  R  G  K  S  R  W  V  C  *  E  V  *  D  L  G  K  L  V  Q  K  T  E  L  M  P  F  F  E  F  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  L  I  F  :  *  F  F  G  T  K  P  H  E  F  H  I  K  S  V  N  K  N  T  Y  S  K  Y  I  F  V  *  Y  S  A  K  E  T  G  I  I  S  I  A  R  S  S  K  D  I  I  S  N  N  M  S  N  R  S  P  S  K  H  I  N  N  I  E  S  N  W  I  I  *  F  *  Q  T  Y  I  F  L  S  P  N  I  S  S  F  K  V  R  N  S  I  L  R  W  H  L  F  R  Y  I  F  S  L  E  I  E  E  N  E  P  S  K  E  K  R  K  P  S  A  Q  T  D  D  N  G  W  I  E  F  S  F  H  S  E  I  S  G  F  F  G  D  R  F  E  G  D  G  F  V  E  E  E  G  R  V  G  G  F  V  E  R  S  E  T  L  E  S  W  C  R  K  Q  S  *  C  H  F  L  S  L </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  D  *  F  F :   N  S  L  A  Q  N  H  M  N  F  T  *  N  Q  L  T  K  T  H  I  V  N  I  F  L  F  D  I  Q  P  K  K  L  G  S  Y  P  L  L  E  V  A  R  I  *  *  A  T  I  C  P  I  D  P  Q  A  S  T  S  T  I  L  N  P  T  G  S  F  D  F  N  K  L  I  Y  S  L  A  L  T  S  P  A  S  K  *  E  I  P  F  *  D  G  T  C  F  A  T  F  S  L  W  K  L  K  K  T  N  L  P  R  K  S  E  S  P  V  L  K  L  M  T  T  D  G  L  S  S  A  F  T  A  R  F  R  G  F  L  V  I  G  L  K  A  M  G  L  L  R  K  R  E  E  S  V  G  L  L  R  G  L  R  P  W  K  V  G  A  E  N  R  A  D  A  I  F  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87362" stop="87667"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTYIFLSPNISSFKVRNSILRWHLFRYIFSLEIEENEPSKEKRKPSAQTDDNGWIEFSFHSEISGFFGDRFEGDGFVEEEGRVGGFVERSETLESWCRKQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87423" stop="87680"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGTCFATFSLWKLKKTNLPRKSESPVLKLMTTDGLSSAFTARFRGFLVIGLKAMGLLRKREESVGLLRGLRPWKVGAENRADAIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="87097" e_stop="87377"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87097" e_stop="87377" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87097" stop="87377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCC</gDNA_template>
            <first_frame> F  W  M  H  S  R  I  Q  M  Q  K  K  T  E  I  V  L  V  I  L  W  H  K  T  T  *  I  S  H  K  I  S  *  Q  K  H  I  *  *  I  Y  F  C  L  I  F  S  Q  R  N  W  D  H  I  H  C  *  K  *  Q  G  Y  N  K  Q  Q  Y  V  Q  *  I  P  K  Q  A  H  Q  Q  Y  *  I  Q  L  D  H  L  I  L  T  N  L  Y  I   </first_frame>
            <second_frame>  F  G  C  I  V  E  F  K  C  K  R  K  Q  R  *  Y  *  *  F  F  G  T  K  P  H  E  F  H  I  K  S  V  N  K  N  T  Y  S  K  Y  I  F  V  *  Y  S  A  K  E  T  G  I  I  S  I  A  R  S  S  K  D  I  I  S  N  N  M  S  N  R  S  P  S  K  H  I  N  N  I  E  S  N  W  I  I  *  F  *  Q  T  Y  I  F  </second_frame>
            <third_frame>   L  D  A  *  S  N  S  N  A  K  E  N  R  D  S  T  S  N  S  L  A  Q  N  H  M  N  F  T  *  N  Q  L  T  K  T  H  I  V  N  I  F  L  F  D  I  Q  P  K  K  L  G  S  Y  P  L  L  E  V  A  R  I  *  *  A  T  I  C  P  I  D  P  Q  A  S  T  S  T  I  L  N  P  T  G  S  F  D  F  N  K  L  I  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0032F07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="86900" e_stop="86913"/>
            <exon e_start="87139" e_stop="87688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.643"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.643">
            <gDNA_exon_boundary e_start="86900" e_stop="86913" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86914" i_stop="87138" i_length="225"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="87139" e_stop="87688" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86900" stop="86913"/>
              <exon start="87139" stop="87688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733322" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTTTCTCTAAT : ATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTTG</gDNA_template>
            <first_frame> L  F  S  L  I :   *  Y  *  *  F  F  G  T  K  P  H  E  F  H  I  K  S  V  N  K  N  T  Y  S  K  Y  I  F  V  *  Y  S  A  K  E  T  G  I  I  S  I  A  R  S  S  K  D  I  I  S  N  N  M  S  N  R  S  P  S  K  H  I  N  N  I  E  S  N  W  I  I  *  F  *  Q  T  Y  I  F  L  S  P  N  I  S  S  F  K  V  R  N  S  I  L  R  W  H  L  F  R  Y  I  F  S  L  E  I  E  E  N  E  P  S  K  E  K  R  K  P  S  A  Q  T  D  D  N  G  W  I  E  F  S  F  H  S  E  I  S  G  F  F  G  D  R  F  E  G  D  G  F  V  E  E  E  G  R  V  G  G  F  V  E  R  S  E  T  L  E  S  W  C  R  K  Q  S  *  C  H  F  L  S  L  L </first_frame>
            <second_frame>  Y  F  L  *   : Y  S  T  S  N  S  L  A  Q  N  H  M  N  F  T  *  N  Q  L  T  K  T  H  I  V  N  I  F  L  F  D  I  Q  P  K  K  L  G  S  Y  P  L  L  E  V  A  R  I  *  *  A  T  I  C  P  I  D  P  Q  A  S  T  S  T  I  L  N  P  T  G  S  F  D  F  N  K  L  I  Y  S  L  A  L  T  S  P  A  S  K  *  E  I  P  F  *  D  G  T  C  F  A  T  F  S  L  W  K  L  K  K  T  N  L  P  R  K  S  E  S  P  V  L  K  L  M  T  T  D  G  L  S  S  A  F  T  A  R  F  R  G  F  L  V  I  G  L  K  A  M  G  L  L  R  K  R  E  E  S  V  G  L  L  R  G  L  R  P  W  K  V  G  A  E  N  R  A  D  A  I  F  *  V  C   </second_frame>
            <third_frame>   I  F  S  N  :  I  V  L  V  I  L  W  H  K  T  T  *  I  S  H  K  I  S  *  Q  K  H  I  *  *  I  Y  F  C  L  I  F  S  Q  R  N  W  D  H  I  H  C  *  K  *  Q  G  Y  N  K  Q  Q  Y  V  Q  *  I  P  K  Q  A  H  Q  Q  Y  *  I  Q  L  D  H  L  I  L  T  N  L  Y  I  P  *  P  *  H  L  Q  L  Q  S  E  K  F  H  S  E  M  A  P  V  S  L  H  F  L  S  G  N  *  R  K  R  T  F  Q  G  K  A  K  A  Q  C  S  N  *  *  Q  R  M  D  *  V  Q  L  S  Q  R  D  F  G  V  F  W  *  *  V  *  R  R  W  V  C  *  G  R  G  K  S  R  W  V  C  *  E  V  *  D  L  G  K  L  V  Q  K  T  E  L  M  P  F  F  E  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87362" stop="87667"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTYIFLSPNISSFKVRNSILRWHLFRYIFSLEIEENEPSKEKRKPSAQTDDNGWIEFSFHSEISGFFGDRFEGDGFVEEEGRVGGFVERSETLESWCRKQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87423" stop="87680"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGTCFATFSLWKLKKTNLPRKSESPVLKLMTTDGLSSAFTARFRGFLVIGLKAMGLLRKREESVGLLRGLRPWKVGAENRADAIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="86253" e_stop="86288"/>
            <exon e_start="87143" e_stop="87738"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.150" acc_prob="0.000" e_score="0.556"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.556">
            <gDNA_exon_boundary e_start="86253" e_stop="86288" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.150" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86289" i_stop="87142" i_length="854"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="87143" e_stop="87738" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86253" stop="86288"/>
              <exon start="87143" stop="87738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717807" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTATTTTTACTTTATATATTCTCATCATCGCTTG : TACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTTGTTTGATGAAATGCAATGCAAATTTGGGTGTGTTGAGGAGTATATGTGGTT</gDNA_template>
            <first_frame> Y  Y  F  Y  F  I  Y  S  H  H  R  L  :  Y  *  *  F  F  G  T  K  P  H  E  F  H  I  K  S  V  N  K  N  T  Y  S  K  Y  I  F  V  *  Y  S  A  K  E  T  G  I  I  S  I  A  R  S  S  K  D  I  I  S  N  N  M  S  N  R  S  P  S  K  H  I  N  N  I  E  S  N  W  I  I  *  F  *  Q  T  Y  I  F  L  S  P  N  I  S  S  F  K  V  R  N  S  I  L  R  W  H  L  F  R  Y  I  F  S  L  E  I  E  E  N  E  P  S  K  E  K  R  K  P  S  A  Q  T  D  D  N  G  W  I  E  F  S  F  H  S  E  I  S  G  F  F  G  D  R  F  E  G  D  G  F  V  E  E  E  G  R  V  G  G  F  V  E  R  S  E  T  L  E  S  W  C  R  K  Q  S  *  C  H  F  L  S  L  L  F  D  E  M  Q  C  K  F  G  C  V  E  E  Y  M  W   </first_frame>
            <second_frame>  I  I  F  T  L  Y  I  L  I  I  A  C :   T  S  N  S  L  A  Q  N  H  M  N  F  T  *  N  Q  L  T  K  T  H  I  V  N  I  F  L  F  D  I  Q  P  K  K  L  G  S  Y  P  L  L  E  V  A  R  I  *  *  A  T  I  C  P  I  D  P  Q  A  S  T  S  T  I  L  N  P  T  G  S  F  D  F  N  K  L  I  Y  S  L  A  L  T  S  P  A  S  K  *  E  I  P  F  *  D  G  T  C  F  A  T  F  S  L  W  K  L  K  K  T  N  L  P  R  K  S  E  S  P  V  L  K  L  M  T  T  D  G  L  S  S  A  F  T  A  R  F  R  G  F  L  V  I  G  L  K  A  M  G  L  L  R  K  R  E  E  S  V  G  L  L  R  G  L  R  P  W  K  V  G  A  E  N  R  A  D  A  I  F  *  V  C  C  L  M  K  C  N  A  N  L  G  V  L  R  S  I  C  G  </second_frame>
            <third_frame>   L  F  L  L  Y  I  F  S  S  S  L   : V  L  V  I  L  W  H  K  T  T  *  I  S  H  K  I  S  *  Q  K  H  I  *  *  I  Y  F  C  L  I  F  S  Q  R  N  W  D  H  I  H  C  *  K  *  Q  G  Y  N  K  Q  Q  Y  V  Q  *  I  P  K  Q  A  H  Q  Q  Y  *  I  Q  L  D  H  L  I  L  T  N  L  Y  I  P  *  P  *  H  L  Q  L  Q  S  E  K  F  H  S  E  M  A  P  V  S  L  H  F  L  S  G  N  *  R  K  R  T  F  Q  G  K  A  K  A  Q  C  S  N  *  *  Q  R  M  D  *  V  Q  L  S  Q  R  D  F  G  V  F  W  *  *  V  *  R  R  W  V  C  *  G  R  G  K  S  R  W  V  C  *  E  V  *  D  L  G  K  L  V  Q  K  T  E  L  M  P  F  F  E  F  V  V  *  *  N  A  M  Q  I  W  V  C  *  G  V  Y  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87362" stop="87667"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTYIFLSPNISSFKVRNSILRWHLFRYIFSLEIEENEPSKEKRKPSAQTDDNGWIEFSFHSEISGFFGDRFEGDGFVEEEGRVGGFVERSETLESWCRKQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87423" stop="87680"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGTCFATFSLWKLKKTNLPRKSESPVLKLMTTDGLSSAFTARFRGFLVIGLKAMGLLRKREESVGLLRGLRPWKVGAENRADAIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="84479" e_stop="84590"/>
            <exon e_start="86898" e_stop="86913"/>
            <exon e_start="87149" e_stop="87754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.538"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.538">
            <gDNA_exon_boundary e_start="84479" e_stop="84590" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84591" i_stop="86897" i_length="2307"/>
          </intron>
          <exon e_serial="2" e_score="0.625">
            <gDNA_exon_boundary e_start="86898" e_stop="86913" e_length="16"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86914" i_stop="87148" i_length="235"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="87149" e_stop="87754" e_length="606"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84479" stop="84590"/>
              <exon start="86898" stop="86913"/>
              <exon start="87149" stop="87754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717631" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTAATTTTTGA : TATTATTTTCTCTAAT : TAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTTGTTTGATGAAATGCAATGCAAATTTGGGTGTGTTGAGGAGTATATGTGGTTATTGGGGATTTCAGTA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  D  *  F  L   : I  L  F  S  L  I :   N  S  L  A  Q  N  H  M  N  F  T  *  N  Q  L  T  K  T  H  I  V  N  I  F  L  F  D  I  Q  P  K  K  L  G  S  Y  P  L  L  E  V  A  R  I  *  *  A  T  I  C  P  I  D  P  Q  A  S  T  S  T  I  L  N  P  T  G  S  F  D  F  N  K  L  I  Y  S  L  A  L  T  S  P  A  S  K  *  E  I  P  F  *  D  G  T  C  F  A  T  F  S  L  W  K  L  K  K  T  N  L  P  R  K  S  E  S  P  V  L  K  L  M  T  T  D  G  L  S  S  A  F  T  A  R  F  R  G  F  L  V  I  G  L  K  A  M  G  L  L  R  K  R  E  E  S  V  G  L  L  R  G  L  R  P  W  K  V  G  A  E  N  R  A  D  A  I  F  *  V  C  C  L  M  K  C  N  A  N  L  G  V  L  R  S  I  C  G  Y  W  G  F  Q   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  I  N  F  *  :  Y  Y  F  L  *   : L  I  L  W  H  K  T  T  *  I  S  H  K  I  S  *  Q  K  H  I  *  *  I  Y  F  C  L  I  F  S  Q  R  N  W  D  H  I  H  C  *  K  *  Q  G  Y  N  K  Q  Q  Y  V  Q  *  I  P  K  Q  A  H  Q  Q  Y  *  I  Q  L  D  H  L  I  L  T  N  L  Y  I  P  *  P  *  H  L  Q  L  Q  S  E  K  F  H  S  E  M  A  P  V  S  L  H  F  L  S  G  N  *  R  K  R  T  F  Q  G  K  A  K  A  Q  C  S  N  *  *  Q  R  M  D  *  V  Q  L  S  Q  R  D  F  G  V  F  W  *  *  V  *  R  R  W  V  C  *  G  R  G  K  S  R  W  V  C  *  E  V  *  D  L  G  K  L  V  Q  K  T  E  L  M  P  F  F  E  F  V  V  *  *  N  A  M  Q  I  W  V  C  *  G  V  Y  V  V  I  G  D  F  S  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  L  I  F  D :   I  I  F  S  N  :  *  F  F  G  T  K  P  H  E  F  H  I  K  S  V  N  K  N  T  Y  S  K  Y  I  F  V  *  Y  S  A  K  E  T  G  I  I  S  I  A  R  S  S  K  D  I  I  S  N  N  M  S  N  R  S  P  S  K  H  I  N  N  I  E  S  N  W  I  I  *  F  *  Q  T  Y  I  F  L  S  P  N  I  S  S  F  K  V  R  N  S  I  L  R  W  H  L  F  R  Y  I  F  S  L  E  I  E  E  N  E  P  S  K  E  K  R  K  P  S  A  Q  T  D  D  N  G  W  I  E  F  S  F  H  S  E  I  S  G  F  F  G  D  R  F  E  G  D  G  F  V  E  E  E  G  R  V  G  G  F  V  E  R  S  E  T  L  E  S  W  C  R  K  Q  S  *  C  H  F  L  S  L  L  F  D  E  M  Q  C  K  F  G  C  V  E  E  Y  M  W  L  L  G  I  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87362" stop="87667"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTYIFLSPNISSFKVRNSILRWHLFRYIFSLEIEENEPSKEKRKPSAQTDDNGWIEFSFHSEISGFFGDRFEGDGFVEEEGRVGGFVERSETLESWCRKQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="8" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87423" stop="87680"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGTCFATFSLWKLKKTNLPRKSESPVLKLMTTDGLSSAFTARFRGFLVIGLKAMGLLRKREESVGLLRGLRPWKVGAENRADAIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="84476" e_stop="84549"/>
            <exon e_start="87149" e_stop="87685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84476" e_stop="84549" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84550" i_stop="87148" i_length="2599"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="87149" e_stop="87685" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84476" stop="84549"/>
              <exon start="87149" stop="87685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736857" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="9" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN : TAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTG</gDNA_template>
            <first_frame> G  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F :   N  S  L  A  Q  N  H  M  N  F  T  *  N  Q  L  T  K  T  H  I  V  N  I  F  L  F  D  I  Q  P  K  K  L  G  S  Y  P  L  L  E  V  A  R  I  *  *  A  T  I  C  P  I  D  P  Q  A  S  T  S  T  I  L  N  P  T  G  S  F  D  F  N  K  L  I  Y  S  L  A  L  T  S  P  A  S  K  *  E  I  P  F  *  D  G  T  C  F  A  T  F  S  L  W  K  L  K  K  T  N  L  P  R  K  S  E  S  P  V  L  K  L  M  T  T  D  G  L  S  S  A  F  T  A  R  F  R  G  F  L  V  I  G  L  K  A  M  G  L  L  R  K  R  E  E  S  V  G  L  L  R  G  L  R  P  W  K  V  G  A  E  N  R  A  D  A  I  F  *  V   </first_frame>
            <second_frame>  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : L  I  L  W  H  K  T  T  *  I  S  H  K  I  S  *  Q  K  H  I  *  *  I  Y  F  C  L  I  F  S  Q  R  N  W  D  H  I  H  C  *  K  *  Q  G  Y  N  K  Q  Q  Y  V  Q  *  I  P  K  Q  A  H  Q  Q  Y  *  I  Q  L  D  H  L  I  L  T  N  L  Y  I  P  *  P  *  H  L  Q  L  Q  S  E  K  F  H  S  E  M  A  P  V  S  L  H  F  L  S  G  N  *  R  K  R  T  F  Q  G  K  A  K  A  Q  C  S  N  *  *  Q  R  M  D  *  V  Q  L  S  Q  R  D  F  G  V  F  W  *  *  V  *  R  R  W  V  C  *  G  R  G  K  S  R  W  V  C  *  E  V  *  D  L  G  K  L  V  Q  K  T  E  L  M  P  F  F  E  F  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  :  *  F  F  G  T  K  P  H  E  F  H  I  K  S  V  N  K  N  T  Y  S  K  Y  I  F  V  *  Y  S  A  K  E  T  G  I  I  S  I  A  R  S  S  K  D  I  I  S  N  N  M  S  N  R  S  P  S  K  H  I  N  N  I  E  S  N  W  I  I  *  F  *  Q  T  Y  I  F  L  S  P  N  I  S  S  F  K  V  R  N  S  I  L  R  W  H  L  F  R  Y  I  F  S  L  E  I  E  E  N  E  P  S  K  E  K  R  K  P  S  A  Q  T  D  D  N  G  W  I  E  F  S  F  H  S  E  I  S  G  F  F  G  D  R  F  E  G  D  G  F  V  E  E  E  G  R  V  G  G  F  V  E  R  S  E  T  L  E  S  W  C  R  K  Q  S  *  C  H  F  L  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87362" stop="87667"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTYIFLSPNISSFKVRNSILRWHLFRYIFSLEIEENEPSKEKRKPSAQTDDNGWIEFSFHSEISGFFGDRFEGDGFVEEEGRVGGFVERSETLESWCRKQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="9" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87423" stop="87680"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGTCFATFSLWKLKKTNLPRKSESPVLKLMTTDGLSSAFTARFRGFLVIGLKAMGLLRKREESVGLLRGLRPWKVGAENRADAIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="87751" PGL_stop="84478"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87742" e_stop="87143"/>
            <exon e_start="86572" e_stop="86561"/>
            <exon e_start="84588" e_stop="84496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.833"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87742" e_stop="87143" e_length="600"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87142" i_stop="86573" i_length="570"/>
          </intron>
          <exon e_serial="2" e_score="0.833">
            <gDNA_exon_boundary e_start="86572" e_stop="86561" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86560" i_stop="84589" i_length="1972"/>
          </intron>
          <exon e_serial="3" e_score="0.636">
            <gDNA_exon_boundary e_start="84588" e_stop="84496" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87742" stop="87143"/>
              <exon start="86572" stop="86561"/>
              <exon start="84588" stop="84496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87742" stop="87146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87687" stop="87146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87687" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87661" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATAACCACATATACTCCTCAACACACCCAAATTTGCATTGCATTTCATCAAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTA : AAAAAATAAAAT : AAAAATTAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> Q  *  P  H  I  L  L  N  T  P  K  F  A  L  H  F  I  K  Q  Q  T  Q  K  M  A  S  A  L  F  S  A  P  T  F  Q  G  L  R  P  L  N  K  P  T  D  S  S  L  F  L  N  K  P  I  A  F  K  P  I  T  K  K  P  R  N  L  A  V  K  A  E  L  N  P  S  V  V  I  S  L  S  T  G  L  S  L  F  L  G  R  F  V  F  F  N  F  Q  R  E  N  V  A  K  Q  V  P  S  Q  N  G  I  S  H  F  E  A  G  D  V  R  A  K  E  Y  I  S  L  L  K  S  N  D  P  V  G  F  N  I  V  D  V  L  A  W  G  S  I  G  H  I  V  A  Y  Y  I  L  A  T  S  S  N  G  Y  D  P  S  F  F  G  *  I  S  N  K  N  I  F  T  I  C  V  F  V  N  *  F  Y  V  K  F  M  W  F  C  A  K  E  L  L  V  :  K  K  *  N  :  K  N  *  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  N  N  H  I  Y  S  S  T  H  P  N  L  H  C  I  S  S  N  N  K  L  K  K  W  H  Q  L  C  F  L  H  Q  L  S  K  V  S  D  L  S  T  N  P  P  T  L  P  S  S  S  T  N  P  S  P  S  N  L  S  P  K  N  P  E  I  S  L  *  K  L  N  S  I  H  P  L  S  S  V  *  A  L  G  F  R  F  S  L  E  G  S  F  S  S  I  S  R  E  K  M  *  R  N  R  C  H  L  R  M  E  F  L  T  L  K  L  E  M  L  G  L  R  N  I  *  V  C  *  N  Q  M  I  Q  L  D  S  I  L  L  M  C  L  L  G  D  L  L  D  I  L  L  L  I  I  S  L  L  L  L  A  M  D  M  I  P  V  S  L  A  E  Y  Q  T  K  I  Y  L  L  Y  V  F  L  L  T  D  F  M  *  N  S  C  G  F  V  P  K  N  Y  *  * :   K  N  K  I :   K  I  N  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   I  T  T  Y  T  P  Q  H  T  Q  I  C  I  A  F  H  Q  T  T  N  S  K  N  G  I  S  S  V  F  C  T  N  F  P  R  S  Q  T  S  Q  Q  T  H  R  L  F  P  L  P  Q  Q  T  H  R  L  Q  T  Y  H  Q  K  T  P  K  S  R  C  E  S  *  T  Q  S  I  R  C  H  Q  F  E  H  W  A  F  A  F  P  W  K  V  R  F  L  Q  F  P  E  R  K  C  S  E  T  G  A  I  S  E  W  N  F  S  L  *  S  W  R  C  *  G  *  G  I  Y  K  F  V  K  I  K  *  S  S  W  I  Q  Y  C  *  C  A  C  L  G  I  Y  W  T  Y  C  C  L  L  Y  P  C  Y  F  *  Q  W  I  *  S  Q  F  L  W  L  N  I  K  Q  K  Y  I  Y  Y  M  C  F  C  *  L  I  L  C  E  I  H  V  V  L  C  Q  R  I  T  S   : K  K  I  K   : *  K  L  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87736" stop="87233"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHILLNTPKFALHFIKQQTQKMASALFSAPTFQGLRPLNKPTDSSLFLNKPIAFKPITKKPRNLAVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVAKQVPSQNGISHFEAGDVRAKEYISLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87742" e_stop="87091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87742" e_stop="87091" e_length="652"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87742" stop="87146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87687" stop="87146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87687" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87661" stop="87091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87661" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATAACCACATATACTCCTCAACACACCCAAATTTGCATTGCATTTCATCAAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCAAAAAATTTC</gDNA_template>
            <first_frame> Q  *  P  H  I  L  L  N  T  P  K  F  A  L  H  F  I  K  Q  Q  T  Q  K  M  A  S  A  L  F  S  A  P  T  F  Q  G  L  R  P  L  N  K  P  T  D  S  S  L  F  L  N  K  P  I  A  F  K  P  I  T  K  K  P  R  N  L  A  V  K  A  E  L  N  P  S  V  V  I  S  L  S  T  G  L  S  L  F  L  G  R  F  V  F  F  N  F  Q  R  E  N  V  A  K  Q  V  P  S  Q  N  G  I  S  H  F  E  A  G  D  V  R  A  K  E  Y  I  S  L  L  K  S  N  D  P  V  G  F  N  I  V  D  V  L  A  W  G  S  I  G  H  I  V  A  Y  Y  I  L  A  T  S  S  N  G  Y  D  P  S  F  F  G  *  I  S  N  K  N  I  F  T  I  C  V  F  V  N  *  F  Y  V  K  F  M  W  F  C  A  K  E  L  L  V  L  S  L  F  S  F  A  F  E  F  D  Y  A  S  K  K  F  </first_frame>
            <second_frame>  N  N  H  I  Y  S  S  T  H  P  N  L  H  C  I  S  S  N  N  K  L  K  K  W  H  Q  L  C  F  L  H  Q  L  S  K  V  S  D  L  S  T  N  P  P  T  L  P  S  S  S  T  N  P  S  P  S  N  L  S  P  K  N  P  E  I  S  L  *  K  L  N  S  I  H  P  L  S  S  V  *  A  L  G  F  R  F  S  L  E  G  S  F  S  S  I  S  R  E  K  M  *  R  N  R  C  H  L  R  M  E  F  L  T  L  K  L  E  M  L  G  L  R  N  I  *  V  C  *  N  Q  M  I  Q  L  D  S  I  L  L  M  C  L  L  G  D  L  L  D  I  L  L  L  I  I  S  L  L  L  L  A  M  D  M  I  P  V  S  L  A  E  Y  Q  T  K  I  Y  L  L  Y  V  F  L  L  T  D  F  M  *  N  S  C  G  F  V  P  K  N  Y  *  Y  Y  L  C  F  L  L  H  L  N  S  T  M  H  P  K  N  F </second_frame>
            <third_frame>   I  T  T  Y  T  P  Q  H  T  Q  I  C  I  A  F  H  Q  T  T  N  S  K  N  G  I  S  S  V  F  C  T  N  F  P  R  S  Q  T  S  Q  Q  T  H  R  L  F  P  L  P  Q  Q  T  H  R  L  Q  T  Y  H  Q  K  T  P  K  S  R  C  E  S  *  T  Q  S  I  R  C  H  Q  F  E  H  W  A  F  A  F  P  W  K  V  R  F  L  Q  F  P  E  R  K  C  S  E  T  G  A  I  S  E  W  N  F  S  L  *  S  W  R  C  *  G  *  G  I  Y  K  F  V  K  I  K  *  S  S  W  I  Q  Y  C  *  C  A  C  L  G  I  Y  W  T  Y  C  C  L  L  Y  P  C  Y  F  *  Q  W  I  *  S  Q  F  L  W  L  N  I  K  Q  K  Y  I  Y  Y  M  C  F  C  *  L  I  L  C  E  I  H  V  V  L  C  Q  R  I  T  S  T  I  S  V  F  F  C  I  *  I  R  L  C  I  Q  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87736" stop="87233"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHILLNTPKFALHFIKQQTQKMASALFSAPTFQGLRPLNKPTDSSLFLNKPIAFKPITKKPRNLAVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVAKQVPSQNGISHFEAGDVRAKEYISLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="87742" e_stop="87096"/>
            <exon e_start="84588" e_stop="84501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87742" e_stop="87096" e_length="647"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87095" i_stop="84589" i_length="2507"/>
          </intron>
          <exon e_serial="2" e_score="0.636">
            <gDNA_exon_boundary e_start="84588" e_stop="84501" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87742" stop="87146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87691" stop="87096"/>
              <exon start="84588" stop="84501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87687" stop="87146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87687" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87661" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATAACCACATATACTCCTCAACACACCCAAATTTGCATTGCATTTCATCAAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCAAAAA : AAAAATTAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> Q  *  P  H  I  L  L  N  T  P  K  F  A  L  H  F  I  K  Q  Q  T  Q  K  M  A  S  A  L  F  S  A  P  T  F  Q  G  L  R  P  L  N  K  P  T  D  S  S  L  F  L  N  K  P  I  A  F  K  P  I  T  K  K  P  R  N  L  A  V  K  A  E  L  N  P  S  V  V  I  S  L  S  T  G  L  S  L  F  L  G  R  F  V  F  F  N  F  Q  R  E  N  V  A  K  Q  V  P  S  Q  N  G  I  S  H  F  E  A  G  D  V  R  A  K  E  Y  I  S  L  L  K  S  N  D  P  V  G  F  N  I  V  D  V  L  A  W  G  S  I  G  H  I  V  A  Y  Y  I  L  A  T  S  S  N  G  Y  D  P  S  F  F  G  *  I  S  N  K  N  I  F  T  I  C  V  F  V  N  *  F  Y  V  K  F  M  W  F  C  A  K  E  L  L  V  L  S  L  F  S  F  A  F  E  F  D  Y  A  S  K  K :   K  I  N  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  N  N  H  I  Y  S  S  T  H  P  N  L  H  C  I  S  S  N  N  K  L  K  K  W  H  Q  L  C  F  L  H  Q  L  S  K  V  S  D  L  S  T  N  P  P  T  L  P  S  S  S  T  N  P  S  P  S  N  L  S  P  K  N  P  E  I  S  L  *  K  L  N  S  I  H  P  L  S  S  V  *  A  L  G  F  R  F  S  L  E  G  S  F  S  S  I  S  R  E  K  M  *  R  N  R  C  H  L  R  M  E  F  L  T  L  K  L  E  M  L  G  L  R  N  I  *  V  C  *  N  Q  M  I  Q  L  D  S  I  L  L  M  C  L  L  G  D  L  L  D  I  L  L  L  I  I  S  L  L  L  L  A  M  D  M  I  P  V  S  L  A  E  Y  Q  T  K  I  Y  L  L  Y  V  F  L  L  T  D  F  M  *  N  S  C  G  F  V  P  K  N  Y  *  Y  Y  L  C  F  L  L  H  L  N  S  T  M  H  P  K   : K  K  L  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   I  T  T  Y  T  P  Q  H  T  Q  I  C  I  A  F  H  Q  T  T  N  S  K  N  G  I  S  S  V  F  C  T  N  F  P  R  S  Q  T  S  Q  Q  T  H  R  L  F  P  L  P  Q  Q  T  H  R  L  Q  T  Y  H  Q  K  T  P  K  S  R  C  E  S  *  T  Q  S  I  R  C  H  Q  F  E  H  W  A  F  A  F  P  W  K  V  R  F  L  Q  F  P  E  R  K  C  S  E  T  G  A  I  S  E  W  N  F  S  L  *  S  W  R  C  *  G  *  G  I  Y  K  F  V  K  I  K  *  S  S  W  I  Q  Y  C  *  C  A  C  L  G  I  Y  W  T  Y  C  C  L  L  Y  P  C  Y  F  *  Q  W  I  *  S  Q  F  L  W  L  N  I  K  Q  K  Y  I  Y  Y  M  C  F  C  *  L  I  L  C  E  I  H  V  V  L  C  Q  R  I  T  S  T  I  S  V  F  F  C  I  *  I  R  L  C  I  Q  K  :  K  N  *  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87736" stop="87233"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHILLNTPKFALHFIKQQTQKMASALFSAPTFQGLRPLNKPTDSSLFLNKPIAFKPITKKPRNLAVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVAKQVPSQNGISHFEAGDVRAKEYISLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="87742" e_stop="87096"/>
            <exon e_start="84553" e_stop="84478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87742" e_stop="87096" e_length="647"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87095" i_stop="84554" i_length="2542"/>
          </intron>
          <exon e_serial="2" e_score="0.000">
            <gDNA_exon_boundary e_start="84553" e_stop="84478" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87742" stop="87146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87691" stop="87096"/>
              <exon start="84553" stop="84478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87687" stop="87146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87687" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87661" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATAACCACATATACTCCTCAACACACCCAAATTTGCATTGCATTTCATCAAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCAAAAA : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> Q  *  P  H  I  L  L  N  T  P  K  F  A  L  H  F  I  K  Q  Q  T  Q  K  M  A  S  A  L  F  S  A  P  T  F  Q  G  L  R  P  L  N  K  P  T  D  S  S  L  F  L  N  K  P  I  A  F  K  P  I  T  K  K  P  R  N  L  A  V  K  A  E  L  N  P  S  V  V  I  S  L  S  T  G  L  S  L  F  L  G  R  F  V  F  F  N  F  Q  R  E  N  V  A  K  Q  V  P  S  Q  N  G  I  S  H  F  E  A  G  D  V  R  A  K  E  Y  I  S  L  L  K  S  N  D  P  V  G  F  N  I  V  D  V  L  A  W  G  S  I  G  H  I  V  A  Y  Y  I  L  A  T  S  S  N  G  Y  D  P  S  F  F  G  *  I  S  N  K  N  I  F  T  I  C  V  F  V  N  *  F  Y  V  K  F  M  W  F  C  A  K  E  L  L  V  L  S  L  F  S  F  A  F  E  F  D  Y  A  S  K  N :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  N  N  H  I  Y  S  S  T  H  P  N  L  H  C  I  S  S  N  N  K  L  K  K  W  H  Q  L  C  F  L  H  Q  L  S  K  V  S  D  L  S  T  N  P  P  T  L  P  S  S  S  T  N  P  S  P  S  N  L  S  P  K  N  P  E  I  S  L  *  K  L  N  S  I  H  P  L  S  S  V  *  A  L  G  F  R  F  S  L  E  G  S  F  S  S  I  S  R  E  K  M  *  R  N  R  C  H  L  R  M  E  F  L  T  L  K  L  E  M  L  G  L  R  N  I  *  V  C  *  N  Q  M  I  Q  L  D  S  I  L  L  M  C  L  L  G  D  L  L  D  I  L  L  L  I  I  S  L  L  L  L  A  M  D  M  I  P  V  S  L  A  E  Y  Q  T  K  I  Y  L  L  Y  V  F  L  L  T  D  F  M  *  N  S  C  G  F  V  P  K  N  Y  *  Y  Y  L  C  F  L  L  H  L  N  S  T  M  H  P  K   : I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   I  T  T  Y  T  P  Q  H  T  Q  I  C  I  A  F  H  Q  T  T  N  S  K  N  G  I  S  S  V  F  C  T  N  F  P  R  S  Q  T  S  Q  Q  T  H  R  L  F  P  L  P  Q  Q  T  H  R  L  Q  T  Y  H  Q  K  T  P  K  S  R  C  E  S  *  T  Q  S  I  R  C  H  Q  F  E  H  W  A  F  A  F  P  W  K  V  R  F  L  Q  F  P  E  R  K  C  S  E  T  G  A  I  S  E  W  N  F  S  L  *  S  W  R  C  *  G  *  G  I  Y  K  F  V  K  I  K  *  S  S  W  I  Q  Y  C  *  C  A  C  L  G  I  Y  W  T  Y  C  C  L  L  Y  P  C  Y  F  *  Q  W  I  *  S  Q  F  L  W  L  N  I  K  Q  K  Y  I  Y  Y  M  C  F  C  *  L  I  L  C  E  I  H  V  V  L  C  Q  R  I  T  S  T  I  S  V  F  F  C  I  *  I  R  L  C  I  Q  K  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87736" stop="87233"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHILLNTPKFALHFIKQQTQKMASALFSAPTFQGLRPLNKPTDSSLFLNKPIAFKPITKKPRNLAVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVAKQVPSQNGISHFEAGDVRAKEYISLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="87687" e_stop="87153"/>
            <exon e_start="86572" e_stop="86561"/>
            <exon e_start="84588" e_stop="84501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.833"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="87687" e_stop="87153" e_length="535"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87152" i_stop="86573" i_length="580"/>
          </intron>
          <exon e_serial="2" e_score="0.833">
            <gDNA_exon_boundary e_start="86572" e_stop="86561" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86560" i_stop="84589" i_length="1972"/>
          </intron>
          <exon e_serial="3" e_score="0.636">
            <gDNA_exon_boundary e_start="84588" e_stop="84501" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87687" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87153"/>
              <exon start="86572" stop="86561"/>
              <exon start="84588" stop="84501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87661" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGA : AAAAAATAAAAT : AAAAATTAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> N  K  L  K  K  W  H  Q  L  C  F  L  H  Q  L  S  K  V  S  D  L  S  T  N  P  P  T  L  P  S  S  S  T  N  P  S  P  S  N  L  S  P  K  N  P  E  I  S  L  *  K  L  N  S  I  H  P  L  S  S  V  *  A  L  G  F  R  F  S  L  E  G  S  F  S  S  I  S  R  E  K  M  *  R  N  R  C  H  L  R  M  E  F  L  T  L  K  L  E  M  L  G  L  R  N  I  *  V  C  *  N  Q  M  I  Q  L  D  S  I  L  L  M  C  L  L  G  D  L  L  D  I  L  L  L  I  I  S  L  L  L  L  A  M  D  M  I  P  V  S  L  A  E  Y  Q  T  K  I  Y  L  L  Y  V  F  L  L  T  D  F  M  *  N  S  C  G  F  V  P  K   : K  K  I  K   : *  K  L  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  T  N  S  K  N  G  I  S  S  V  F  C  T  N  F  P  R  S  Q  T  S  Q  Q  T  H  R  L  F  P  L  P  Q  Q  T  H  R  L  Q  T  Y  H  Q  K  T  P  K  S  R  C  E  S  *  T  Q  S  I  R  C  H  Q  F  E  H  W  A  F  A  F  P  W  K  V  R  F  L  Q  F  P  E  R  K  C  S  E  T  G  A  I  S  E  W  N  F  S  L  *  S  W  R  C  *  G  *  G  I  Y  K  F  V  K  I  K  *  S  S  W  I  Q  Y  C  *  C  A  C  L  G  I  Y  W  T  Y  C  C  L  L  Y  P  C  Y  F  *  Q  W  I  *  S  Q  F  L  W  L  N  I  K  Q  K  Y  I  Y  Y  M  C  F  C  *  L  I  L  C  E  I  H  V  V  L  C  Q  R  :  K  K  *  N  :  K  N  *  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   Q  T  Q  K  M  A  S  A  L  F  S  A  P  T  F  Q  G  L  R  P  L  N  K  P  T  D  S  S  L  F  L  N  K  P  I  A  F  K  P  I  T  K  K  P  R  N  L  A  V  K  A  E  L  N  P  S  V  V  I  S  L  S  T  G  L  S  L  F  L  G  R  F  V  F  F  N  F  Q  R  E  N  V  A  K  Q  V  P  S  Q  N  G  I  S  H  F  E  A  G  D  V  R  A  K  E  Y  I  S  L  L  K  S  N  D  P  V  G  F  N  I  V  D  V  L  A  W  G  S  I  G  H  I  V  A  Y  Y  I  L  A  T  S  S  N  G  Y  D  P  S  F  F  G  *  I  S  N  K  N  I  F  T  I  C  V  F  V  N  *  F  Y  V  K  F  M  W  F  C  A  K  E :   K  N  K  I :   K  I  N  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87685" stop="87233"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTQKMASALFSAPTFQGLRPLNKPTDSSLFLNKPIAFKPITKKPRNLAVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVAKQVPSQNGISHFEAGDVRAKEYISLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="87751" e_stop="87153"/>
            <exon e_start="84529" e_stop="84478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-only e_score="0.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="87751" e_stop="87153" e_length="599"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87152" i_stop="84530" i_length="2623"/>
          </intron>
          <exon e_serial="2" e_score="0.000">
            <gDNA_exon_boundary e_start="84529" e_stop="84478" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87751" stop="87153"/>
              <exon start="84529" stop="84478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87687" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87685" stop="87211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87661" stop="87209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAATCCCCAATAACCACATATACTCCTCAACACACCCAAATTTGCATTGCATTTCATCAAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGA : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> *  N  P  Q  *  P  H  I  L  L  N  T  P  K  F  A  L  H  F  I  K  Q  Q  T  Q  K  M  A  S  A  L  F  S  A  P  T  F  Q  G  L  R  P  L  N  K  P  T  D  S  S  L  F  L  N  K  P  I  A  F  K  P  I  T  K  K  P  R  N  L  A  V  K  A  E  L  N  P  S  V  V  I  S  L  S  T  G  L  S  L  F  L  G  R  F  V  F  F  N  F  Q  R  E  N  V  A  K  Q  V  P  S  Q  N  G  I  S  H  F  E  A  G  D  V  R  A  K  E  Y  I  S  L  L  K  S  N  D  P  V  G  F  N  I  V  D  V  L  A  W  G  S  I  G  H  I  V  A  Y  Y  I  L  A  T  S  S  N  G  Y  D  P  S  F  F  G  *  I  S  N  K  N  I  F  T  I  C  V  F  V  N  *  F  Y  V  K  F  M  W  F  C  A  K  D :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  E  I  P  N  N  H  I  Y  S  S  T  H  P  N  L  H  C  I  S  S  N  N  K  L  K  K  W  H  Q  L  C  F  L  H  Q  L  S  K  V  S  D  L  S  T  N  P  P  T  L  P  S  S  S  T  N  P  S  P  S  N  L  S  P  K  N  P  E  I  S  L  *  K  L  N  S  I  H  P  L  S  S  V  *  A  L  G  F  R  F  S  L  E  G  S  F  S  S  I  S  R  E  K  M  *  R  N  R  C  H  L  R  M  E  F  L  T  L  K  L  E  M  L  G  L  R  N  I  *  V  C  *  N  Q  M  I  Q  L  D  S  I  L  L  M  C  L  L  G  D  L  L  D  I  L  L  L  I  I  S  L  L  L  L  A  M  D  M  I  P  V  S  L  A  E  Y  Q  T  K  I  Y  L  L  Y  V  F  L  L  T  D  F  M  *  N  S  C  G  F  V  P  K   : I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   K  S  P  I  T  T  Y  T  P  Q  H  T  Q  I  C  I  A  F  H  Q  T  T  N  S  K  N  G  I  S  S  V  F  C  T  N  F  P  R  S  Q  T  S  Q  Q  T  H  R  L  F  P  L  P  Q  Q  T  H  R  L  Q  T  Y  H  Q  K  T  P  K  S  R  C  E  S  *  T  Q  S  I  R  C  H  Q  F  E  H  W  A  F  A  F  P  W  K  V  R  F  L  Q  F  P  E  R  K  C  S  E  T  G  A  I  S  E  W  N  F  S  L  *  S  W  R  C  *  G  *  G  I  Y  K  F  V  K  I  K  *  S  S  W  I  Q  Y  C  *  C  A  C  L  G  I  Y  W  T  Y  C  C  L  L  Y  P  C  Y  F  *  Q  W  I  *  S  Q  F  L  W  L  N  I  K  Q  K  Y  I  Y  Y  M  C  F  C  *  L  I  L  C  E  I  H  V  V  L  C  Q  R  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87736" stop="87233"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHILLNTPKFALHFIKQQTQKMASALFSAPTFQGLRPLNKPTDSSLFLNKPIAFKPITKKPRNLAVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVAKQVPSQNGISHFEAGDVRAKEYISLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="100403" PGL_stop="106540"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100403" e_stop="100874"/>
            <exon e_start="101047" e_stop="101132"/>
            <exon e_start="101304" e_stop="101374"/>
            <exon e_start="101537" e_stop="101604"/>
            <exon e_start="102165" e_stop="102226"/>
            <exon e_start="102554" e_stop="102651"/>
            <exon e_start="103362" e_stop="103443"/>
            <exon e_start="103901" e_stop="104043"/>
            <exon e_start="104742" e_stop="104890"/>
            <exon e_start="105331" e_stop="105464"/>
            <exon e_start="105638" e_stop="105756"/>
            <exon e_start="106164" e_stop="106540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100403" e_stop="100874" e_length="472"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.891">
            <gDNA_intron_boundary i_start="100875" i_stop="101046" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101047" e_stop="101132" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.948">
            <gDNA_intron_boundary i_start="101133" i_stop="101303" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101304" e_stop="101374" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="0.541">
            <gDNA_intron_boundary i_start="101375" i_stop="101536" i_length="162"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101537" e_stop="101604" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.965">
            <gDNA_intron_boundary i_start="101605" i_stop="102164" i_length="560"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102165" e_stop="102226" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.822" acc_prob="0.857">
            <gDNA_intron_boundary i_start="102227" i_stop="102553" i_length="327"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102554" e_stop="102651" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="102652" i_stop="103361" i_length="710"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="103362" e_stop="103443" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.973">
            <gDNA_intron_boundary i_start="103444" i_stop="103900" i_length="457"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="103901" e_stop="104043" e_length="143"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.909">
            <gDNA_intron_boundary i_start="104044" i_stop="104741" i_length="698"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="104742" e_stop="104890" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.936" acc_prob="0.965">
            <gDNA_intron_boundary i_start="104891" i_stop="105330" i_length="440"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="105331" e_stop="105464" e_length="134"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="0.830">
            <gDNA_intron_boundary i_start="105465" i_stop="105637" i_length="173"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="105638" e_stop="105756" e_length="119"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="105757" i_stop="106163" i_length="407"/>
          </intron>
          <exon e_serial="12" e_score="0.997">
            <gDNA_exon_boundary e_start="106164" e_stop="106540" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100403" stop="100874"/>
              <exon start="101047" stop="101132"/>
              <exon start="101304" stop="101374"/>
              <exon start="101537" stop="101604"/>
              <exon start="102165" stop="102226"/>
              <exon start="102554" stop="102651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100423" stop="100874"/>
              <exon start="101047" stop="101132"/>
              <exon start="101304" stop="101374"/>
              <exon start="101537" stop="101562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100465" stop="100863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100466" stop="100874"/>
              <exon start="101047" stop="101132"/>
              <exon start="101304" stop="101374"/>
              <exon start="101537" stop="101604"/>
              <exon start="102165" stop="102226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100533" stop="100874"/>
              <exon start="101047" stop="101132"/>
              <exon start="101304" stop="101374"/>
              <exon start="101537" stop="101604"/>
              <exon start="102165" stop="102226"/>
              <exon start="102554" stop="102651"/>
              <exon start="103362" stop="103443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100587" stop="100859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101073" stop="101132"/>
              <exon start="101304" stop="101374"/>
              <exon start="101537" stop="101604"/>
              <exon start="102165" stop="102226"/>
              <exon start="102554" stop="102651"/>
              <exon start="103362" stop="103443"/>
              <exon start="103901" stop="104043"/>
              <exon start="104742" stop="104890"/>
              <exon start="105331" stop="105412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101373" stop="101374"/>
              <exon start="101537" stop="101604"/>
              <exon start="102165" stop="102226"/>
              <exon start="102554" stop="102651"/>
              <exon start="103362" stop="103443"/>
              <exon start="103901" stop="104043"/>
              <exon start="104742" stop="104890"/>
              <exon start="105331" stop="105464"/>
              <exon start="105638" stop="105715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103953" stop="104043"/>
              <exon start="104742" stop="104890"/>
              <exon start="105331" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104823" stop="104890"/>
              <exon start="105331" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104823" stop="104890"/>
              <exon start="105331" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104823" stop="104890"/>
              <exon start="105331" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104825" stop="104890"/>
              <exon start="105331" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105342" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105395" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325798" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106164" stop="106540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106185" stop="106540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223825" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGCTCAAATCAGTGTGTGTTTGCAAACACGAGTTTCAGTTTCATGAAGAATGAGTGACTATTCAGCTAAAAACTGTTAGACCCTCTCCCATTTCATGACTGGAGCCGTGCCACAACAACCATGGCTATGTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAG : GACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATG : GTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTG : GAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAG : GATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCGATTTGCCATTATGATG : ATACTGAATCTGATAAAGCAGCTAGAACGCAGTTAAAAGACGCGATCCATTCTGCATTATTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAG : GCTGTTTTAGCTTTATTTGCTGCAAGGAAAGTTTCAGGAATAGTAGTCAACATTGGGTTTAACCAGACATCTATTGTTCCAA : TTCTCTACGGTAAAGTCATGCACCAAGTAGGTGTGGAAGTTGTGGGAATTGGAGCATTGAAGCTTACAGGATTCCTTAAGGAGCAGATGCAACAGAAGAATATTTATTTTGGGTCACTTTACACTGTGCGGACTCTGAAAGAG : AACCTTTGTTATATTGCACTTGATTATGAAGCTGAACTATCCAAAGATACCAACGCATCTTTTCAGATCGGGTCTGAAGGTTGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGT : GCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAG : AAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAAT : TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAGGTTATGTGTTAATACAA</gDNA_template>
            <first_frame> V  A  Q  I  S  V  C  L  Q  T  R  V  S  V  S  *  R  M  S  D  Y  S  A  K  N  C  *  T  L  S  H  F  M  T  G  A  V  P  Q  Q  P  W  L  C  C  C  A  R  Y  G  N  P  Y  L  L  V  P  L  R  A  I  P  P  Q  L  R  S  R  L  S  I  P  W  I  G  S  T  R  *  *  C  I  Y  R  R  R  P  P  E  N  L  I  G  F  R  *  I  F  S  F  K  F  *  R  F  *  G  Q  K  S  L  L  S  *  L  L  Y  V  N  P  G  N  T  L  F  P  I  I  A  Y  G  F  T  F  F  R  I  T  M  S  L  G  I  L  L  F  S  L  K  L  T  *  D  L  D  L  L   : G  R  F  Q  I  Q  Y  Q  N  C  H  S  *  V  F  M  V  N  V  L  K  C  P  V  L  L  L  L  M  :  V  G  L  A  I  A  N  L  V  G  V  S  I  V  L  R  Q  G  D  Q  R  H  F  W :   S  L  A  T  L  N  L  Q  C  I  L  D  *  D  T  S  F  Q  R  Y  T  P   : G  C  R  *  K  L  Q  H  S  R  S  L  C  P  F  R  F  A  I  M  M  :  I  L  N  L  I  K  Q  L  E  R  S  *  K  T  R  S  I  L  H  Y  L  T  *  M  F  L  L  F  V  L  S  T  R :   L  F  *  L  Y  L  L  Q  G  K  F  Q  E  *  *  S  T  L  G  L  T  R  H  L  L  F  Q  :  F  S  T  V  K  S  C  T  K  *  V  W  K  L  W  E  L  E  H  *  S  L  Q  D  S  L  R  S  R  C  N  R  R  I  F  I  L  G  H  F  T  L  C  G  L  *  K  R :   T  F  V  I  L  H  L  I  M  K  L  N  Y  P  K  I  P  T  H  L  F  R  S  G  L  K  V  A  L  H  F  Q  K  S  A  L  K  Q  E  R  F  C  S  S  L  A  L  Q  E   : C  V  L  W  V  Y  R  M  L  W  R  C  A  W  S  T  A  M  T  L  N  *  W  L  M  I  A  G  T  K  Q  *  F  W  L  G  E  V  H  V  C  L  D  *  Q  :  K  D  *  R  R  K  C  V  N  F  F  L  H  A  *  V  M  E  S  E  Y  F  L  P  H  M  A  *  I  L  L  G  M  G  L  S  *  L  A  I :   *  A  P  S  P  V  P  G  V  *  *  K  S  N  F  V  I  G  R  D  A  S  L  C  G  D  Y  C  C  S  G  T  A  G  G  I  A  K  D  Q  E  F  *  C  A  S  W  L  K  I  N  Y  C  I  N  D  *  I  I  C  *  R  Y  K  Y  K  A  I  Y  T  S  S  V  R  L  I  Y  V  V  Q  S  C  G  S  A  K  H  M  M  Y  K  I  L  D  Y  *  G  S  S  K  W  S  E  Y  L  *  V  G  L  L  D  L  *  *  R  S  T  F  F  R  L  C  V  N  T  </first_frame>
            <second_frame>  L  L  K  S  V  C  V  C  K  H  E  F  Q  F  H  E  E  *  V  T  I  Q  L  K  T  V  R  P  S  P  I  S  *  L  E  P  C  H  N  N  H  G  Y  V  V  A  Q  G  M  G  I  R  I  Y  S  F  H  F  E  Q  F  H  L  N  F  D  L  D  C  Q  F  H  G  S  V  R  P  D  D  D  V  Y  T  D  G  V  H  R  R  I  *  S  D  S  V  R  Y  F  H  S  N  F  E  D  F  R  A  K  R  V  C  *  A  D  F  C  M  *  I  L  E  I  H  C  F  R  *  S  P  M  D  L  L  S  S  E  S  P  *  A  L  G  F  Y  F  F  L  *  N  S  L  E  I  W  T  S  *  :  D  V  S  K  F  S  T  R  I  V  I  H  E  Y  L  W  S  T  C  S  S  A  R  C  Y  Y  Y  *  W :   W  V  W  L  L  Q  I  W  L  E  *  V  *  C  S  V  R  E  I  S  D  I  F   : G  V  W  Q  H  *  I  S  N  V  F  *  I  E  T  L  L  F  N  D  I  H  Q  :  D  A  G  E  N  F  N  T  A  D  H  C  V  H  S  D  L  P  L  *  * :   Y  *  I  *  *  S  S  *  N  A  V  K  R  R  D  P  F  C  I  I  *  H  E  C  S  C  C  L  C  C  Q  P   : G  C  F  S  F  I  C  C  K  E  S  F  R  N  S  S  Q  H  W  V  *  P  D  I  Y  C  S  N :   S  L  R  *  S  H  A  P  S  R  C  G  S  C  G  N  W  S  I  E  A  Y  R  I  P  *  G  A  D  A  T  E  E  Y  L  F  W  V  T  L  H  C  A  D  S  E  R   : E  P  L  L  Y  C  T  *  L  *  S  *  T  I  Q  R  Y  Q  R  I  F  S  D  R  V  *  R  L  L  Y  T  F  R  R  A  L  *  N  R  R  D  F  V  P  A  S  H  C  R  S  :  A  C  Y  G  F  T  E  C  C  G  A  V  H  G  A  L  P  *  R  *  I  N  G  *  *  *  L  V  Q  N  S  S  F  G  W  G  K  C  M  F  A  W  I  S  R :   K  I  R  E  G  S  V  *  T  S  S  S  M  H  E  *  W  N  Q  S  T  S  S  P  I  W  R  R  F  C  L  V  W  G  *  A  D  W  Q   : F  E  H  L  P  Q  F  L  V  C  D  E  K  A  I  S  S  *  V  E  T  Q  V  Y  V  V  I  T  V  A  V  A  L  Q  V  V  L  P  K  I  K  S  F  D  V  P  R  G  *  R  S  T  I  A  S  M  I  R  S  F  V  K  D  I  N  I  R  L  F  I  H  Q  V  *  D  *  F  M  S  F  S  H  A  D  L  L  S  I  *  C  T  K  S  *  I  I  E  V  V  P  N  G  V  N  I  C  K  L  D  F  *  T  Y  N  K  G  A  P  F  S  G  Y  V  L  I  Q </second_frame>
            <third_frame>   C  S  N  Q  C  V  F  A  N  T  S  F  S  F  M  K  N  E  *  L  F  S  *  K  L  L  D  P  L  P  F  H  D  W  S  R  A  T  T  T  M  A  M  L  L  R  K  V  W  E  S  V  S  T  R  S  T  S  S  N  S  T  S  T  S  I  S  T  V  N  S  M  D  R  F  D  Q  M  M  M  Y  I  Q  T  A  S  T  G  E  F  D  R  I  P  L  D  I  F  I  Q  I  L  K  I  L  G  P  K  E  S  A  K  L  T  S  V  C  K  S  W  K  Y  I  V  S  D  N  R  L  W  I  Y  F  L  Q  N  H  H  E  P  W  D  S  T  F  F  S  E  T  H  L  R  S  G  P  L  R :   T  F  P  N  S  V  P  E  L  S  F  M  S  I  Y  G  Q  R  A  Q  V  P  G  A  I  I  I  D   : G  G  S  G  Y  C  K  F  G  W  S  K  Y  S  A  P  S  G  R  S  A  T  F  L  :  E  F  G  N  I  E  S  P  M  Y  S  R  L  R  H  F  F  S  T  I  Y  T  R :   M  Q  V  K  T  S  T  Q  P  I  I  V  S  I  P  I  C  H  Y  D   : D  T  E  S  D  K  A  A  R  T  Q  L  K  D  A  I  H  S  A  L  F  D  M  N  V  P  A  V  C  A  V  N  Q  :  A  V  L  A  L  F  A  A  R  K  V  S  G  I  V  V  N  I  G  F  N  Q  T  S  I  V  P   : I  L  Y  G  K  V  M  H  Q  V  G  V  E  V  V  G  I  G  A  L  K  L  T  G  F  L  K  E  Q  M  Q  Q  K  N  I  Y  F  G  S  L  Y  T  V  R  T  L  K  E  :  N  L  C  Y  I  A  L  D  Y  E  A  E  L  S  K  D  T  N  A  S  F  Q  I  G  S  E  G  C  F  T  L  S  E  E  R  F  K  T  G  E  I  L  F  Q  P  R  I  A  G  V :   R  A  M  G  L  Q  N  A  V  A  L  C  M  E  H  C  H  D  A  E  L  M  V  D  D  S  W  Y  K  T  V  V  L  A  G  G  S  A  C  L  P  G  L  A   : E  R  L  E  K  E  V  C  E  L  L  P  P  C  M  S  N  G  I  R  V  L  P  P  P  Y  G  V  D  S  A  W  Y  G  A  K  L  I  G  N  :  L  S  T  F  P  S  S  W  C  V  M  K  K  Q  F  R  H  R  S  R  R  K  F  M  W  *  L  L  L  Q  W  H  C  R  W  Y  C  Q  R  S  R  V  L  M  C  L  V  A  E  D  Q  L  L  H  Q  *  L  D  H  L  L  K  I  *  I  *  G  Y  L  Y  I  K  C  K  T  N  L  C  R  S  V  M  R  I  C  *  A  Y  D  V  Q  N  L  R  L  L  R  *  F  Q  M  E  *  I  S  V  S  W  T  S  R  L  I  I  K  E  H  L  F  Q  V  M  C  *  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100474" stop="100874"/>
                    <exon start="101047" stop="101132"/>
                    <exon start="101304" stop="101374"/>
                    <exon start="101537" stop="101604"/>
                    <exon start="102165" stop="102226"/>
                    <exon start="102554" stop="102651"/>
                    <exon start="103362" stop="103443"/>
                    <exon start="103901" stop="104043"/>
                    <exon start="104742" stop="104890"/>
                    <exon start="105331" stop="105464"/>
                    <exon start="105638" stop="105756"/>
                    <exon start="106164" stop="106241"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1488</number_coding_nucleotides>
                  <number_encoded_amino_acids>496</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLDPLPFHDWSRATTTMAMLLRKVWESVSTRSTSSNSTSTSISTVNSMDRFDQMMMYIQTASTGEFDRIPLDIFIQILKILGPKESAKLTSVCKSWKYIVSDNRLWIYFLQNHHEPWDSTFFSETHLRSGPLRTFPNSVPELSFMSIYGQRAQVPGAIIIDGGSGYCKFGWSKYSAPSGRSATFLEFGNIESPMYSRLRHFFSTIYTRMQVKTSTQPIIVSIPICHYDDTESDKAARTQLKDAIHSALFDMNVPAVCAVNQAVLALFAARKVSGIVVNIGFNQTSIVPILYGKVMHQVGVEVVGIGALKLTGFLKEQMQQKNIYFGSLYTVRTLKENLCYIALDYEAELSKDTNASFQIGSEGCFTLSEERFKTGEILFQPRIAGVRAMGLQNAVALCMEHCHDAELMVDDSWYKTVVLAGGSACLPGLAERLEKEVCELLPPCMSNGIRVLPPPYGVDSAWYGAKLIGNLSTFPSSWCVMKKQFRHRSRRKFMW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100465" e_stop="101132"/>
            <exon e_start="101304" e_stop="101374"/>
            <exon e_start="101537" e_stop="101604"/>
            <exon e_start="102165" e_stop="102226"/>
            <exon e_start="102554" e_stop="102651"/>
            <exon e_start="103362" e_stop="103443"/>
            <exon e_start="103901" e_stop="104043"/>
            <exon e_start="104742" e_stop="104890"/>
            <exon e_start="105331" e_stop="105464"/>
            <exon e_start="105638" e_stop="105756"/>
            <exon e_start="106164" e_stop="106540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100465" e_stop="101132" e_length="668"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.948">
            <gDNA_intron_boundary i_start="101133" i_stop="101303" i_length="171"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101304" e_stop="101374" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.541">
            <gDNA_intron_boundary i_start="101375" i_stop="101536" i_length="162"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101537" e_stop="101604" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.965">
            <gDNA_intron_boundary i_start="101605" i_stop="102164" i_length="560"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102165" e_stop="102226" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.822" acc_prob="0.857">
            <gDNA_intron_boundary i_start="102227" i_stop="102553" i_length="327"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102554" e_stop="102651" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="102652" i_stop="103361" i_length="710"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="103362" e_stop="103443" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.973">
            <gDNA_intron_boundary i_start="103444" i_stop="103900" i_length="457"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="103901" e_stop="104043" e_length="143"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.909">
            <gDNA_intron_boundary i_start="104044" i_stop="104741" i_length="698"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="104742" e_stop="104890" e_length="149"/>
          </exon>
          <intron i_serial="8" don_prob="0.936" acc_prob="0.965">
            <gDNA_intron_boundary i_start="104891" i_stop="105330" i_length="440"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="105331" e_stop="105464" e_length="134"/>
          </exon>
          <intron i_serial="9" don_prob="0.986" acc_prob="0.830">
            <gDNA_intron_boundary i_start="105465" i_stop="105637" i_length="173"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="105638" e_stop="105756" e_length="119"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="105757" i_stop="106163" i_length="407"/>
          </intron>
          <exon e_serial="11" e_score="0.997">
            <gDNA_exon_boundary e_start="106164" e_stop="106540" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100465" stop="100863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100571" stop="101130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100587" stop="100859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101073" stop="101132"/>
              <exon start="101304" stop="101374"/>
              <exon start="101537" stop="101604"/>
              <exon start="102165" stop="102226"/>
              <exon start="102554" stop="102651"/>
              <exon start="103362" stop="103443"/>
              <exon start="103901" stop="104043"/>
              <exon start="104742" stop="104890"/>
              <exon start="105331" stop="105412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101373" stop="101374"/>
              <exon start="101537" stop="101604"/>
              <exon start="102165" stop="102226"/>
              <exon start="102554" stop="102651"/>
              <exon start="103362" stop="103443"/>
              <exon start="103901" stop="104043"/>
              <exon start="104742" stop="104890"/>
              <exon start="105331" stop="105464"/>
              <exon start="105638" stop="105715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103953" stop="104043"/>
              <exon start="104742" stop="104890"/>
              <exon start="105331" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104823" stop="104890"/>
              <exon start="105331" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104823" stop="104890"/>
              <exon start="105331" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104823" stop="104890"/>
              <exon start="105331" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104825" stop="104890"/>
              <exon start="105331" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105342" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105395" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325798" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106164" stop="106540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106185" stop="106540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223825" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGCTAAAAACTGTTAGACCCTCTCCCATTTCATGACTGGAGCCGTGCCACAACAACCATGGCTATGTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAGGTAAATTCCTTTTTACAGTTCTGCTTTTTGAATGTCAAATTAGGTGAACTTTCCAATTGGTTTAATGTAATTTAGCTGAACTAATTTGGGACGGAGGGAGTAGTAGATGAAAGAGTGAAGTATAGATGAGGATATCATGAGTAGCTGGTTTGATAAGGTGTATGATTTGTAGGACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATG : GTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTG : GAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAG : GATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCGATTTGCCATTATGATG : ATACTGAATCTGATAAAGCAGCTAGAACGCAGTTAAAAGACGCGATCCATTCTGCATTATTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAG : GCTGTTTTAGCTTTATTTGCTGCAAGGAAAGTTTCAGGAATAGTAGTCAACATTGGGTTTAACCAGACATCTATTGTTCCAA : TTCTCTACGGTAAAGTCATGCACCAAGTAGGTGTGGAAGTTGTGGGAATTGGAGCATTGAAGCTTACAGGATTCCTTAAGGAGCAGATGCAACAGAAGAATATTTATTTTGGGTCACTTTACACTGTGCGGACTCTGAAAGAG : AACCTTTGTTATATTGCACTTGATTATGAAGCTGAACTATCCAAAGATACCAACGCATCTTTTCAGATCGGGTCTGAAGGTTGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGT : GCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAG : AAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAAT : TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAGGTTATGTGTTAATACAA</gDNA_template>
            <first_frame> F  S  *  K  L  L  D  P  L  P  F  H  D  W  S  R  A  T  T  T  M  A  M  L  L  R  K  V  W  E  S  V  S  T  R  S  T  S  S  N  S  T  S  T  S  I  S  T  V  N  S  M  D  R  F  D  Q  M  M  M  Y  I  Q  T  A  S  T  G  E  F  D  R  I  P  L  D  I  F  I  Q  I  L  K  I  L  G  P  K  E  S  A  K  L  T  S  V  C  K  S  W  K  Y  I  V  S  D  N  R  L  W  I  Y  F  L  Q  N  H  H  E  P  W  D  S  T  F  F  S  E  T  H  L  R  S  G  P  L  R  *  I  P  F  Y  S  S  A  F  *  M  S  N  *  V  N  F  P  I  G  L  M  *  F  S  *  T  N  L  G  R  R  E  *  *  M  K  E  *  S  I  D  E  D  I  M  S  S  W  F  D  K  V  Y  D  L  *  D  V  S  K  F  S  T  R  I  V  I  H  E  Y  L  W  S  T  C  S  S  A  R  C  Y  Y  Y  *  W :   W  V  W  L  L  Q  I  W  L  E  *  V  *  C  S  V  R  E  I  S  D  I  F   : G  V  W  Q  H  *  I  S  N  V  F  *  I  E  T  L  L  F  N  D  I  H  Q  :  D  A  G  E  N  F  N  T  A  D  H  C  V  H  S  D  L  P  L  *  * :   Y  *  I  *  *  S  S  *  N  A  V  K  R  R  D  P  F  C  I  I  *  H  E  C  S  C  C  L  C  C  Q  P   : G  C  F  S  F  I  C  C  K  E  S  F  R  N  S  S  Q  H  W  V  *  P  D  I  Y  C  S  N :   S  L  R  *  S  H  A  P  S  R  C  G  S  C  G  N  W  S  I  E  A  Y  R  I  P  *  G  A  D  A  T  E  E  Y  L  F  W  V  T  L  H  C  A  D  S  E  R   : E  P  L  L  Y  C  T  *  L  *  S  *  T  I  Q  R  Y  Q  R  I  F  S  D  R  V  *  R  L  L  Y  T  F  R  R  A  L  *  N  R  R  D  F  V  P  A  S  H  C  R  S  :  A  C  Y  G  F  T  E  C  C  G  A  V  H  G  A  L  P  *  R  *  I  N  G  *  *  *  L  V  Q  N  S  S  F  G  W  G  K  C  M  F  A  W  I  S  R :   K  I  R  E  G  S  V  *  T  S  S  S  M  H  E  *  W  N  Q  S  T  S  S  P  I  W  R  R  F  C  L  V  W  G  *  A  D  W  Q   : F  E  H  L  P  Q  F  L  V  C  D  E  K  A  I  S  S  *  V  E  T  Q  V  Y  V  V  I  T  V  A  V  A  L  Q  V  V  L  P  K  I  K  S  F  D  V  P  R  G  *  R  S  T  I  A  S  M  I  R  S  F  V  K  D  I  N  I  R  L  F  I  H  Q  V  *  D  *  F  M  S  F  S  H  A  D  L  L  S  I  *  C  T  K  S  *  I  I  E  V  V  P  N  G  V  N  I  C  K  L  D  F  *  T  Y  N  K  G  A  P  F  S  G  Y  V  L  I  Q </first_frame>
            <second_frame>  S  A  K  N  C  *  T  L  S  H  F  M  T  G  A  V  P  Q  Q  P  W  L  C  C  C  A  R  Y  G  N  P  Y  L  L  V  P  L  R  A  I  P  P  Q  L  R  S  R  L  S  I  P  W  I  G  S  T  R  *  *  C  I  Y  R  R  R  P  P  E  N  L  I  G  F  R  *  I  F  S  F  K  F  *  R  F  *  G  Q  K  S  L  L  S  *  L  L  Y  V  N  P  G  N  T  L  F  P  I  I  A  Y  G  F  T  F  F  R  I  T  M  S  L  G  I  L  L  F  S  L  K  L  T  *  D  L  D  L  L  G  K  F  L  F  T  V  L  L  F  E  C  Q  I  R  *  T  F  Q  L  V  *  C  N  L  A  E  L  I  W  D  G  G  S  S  R  *  K  S  E  V  *  M  R  I  S  *  V  A  G  L  I  R  C  M  I  C  R  T  F  P  N  S  V  P  E  L  S  F  M  S  I  Y  G  Q  R  A  Q  V  P  G  A  I  I  I  D   : G  G  S  G  Y  C  K  F  G  W  S  K  Y  S  A  P  S  G  R  S  A  T  F  L  :  E  F  G  N  I  E  S  P  M  Y  S  R  L  R  H  F  F  S  T  I  Y  T  R :   M  Q  V  K  T  S  T  Q  P  I  I  V  S  I  P  I  C  H  Y  D   : D  T  E  S  D  K  A  A  R  T  Q  L  K  D  A  I  H  S  A  L  F  D  M  N  V  P  A  V  C  A  V  N  Q  :  A  V  L  A  L  F  A  A  R  K  V  S  G  I  V  V  N  I  G  F  N  Q  T  S  I  V  P   : I  L  Y  G  K  V  M  H  Q  V  G  V  E  V  V  G  I  G  A  L  K  L  T  G  F  L  K  E  Q  M  Q  Q  K  N  I  Y  F  G  S  L  Y  T  V  R  T  L  K  E  :  N  L  C  Y  I  A  L  D  Y  E  A  E  L  S  K  D  T  N  A  S  F  Q  I  G  S  E  G  C  F  T  L  S  E  E  R  F  K  T  G  E  I  L  F  Q  P  R  I  A  G  V :   R  A  M  G  L  Q  N  A  V  A  L  C  M  E  H  C  H  D  A  E  L  M  V  D  D  S  W  Y  K  T  V  V  L  A  G  G  S  A  C  L  P  G  L  A   : E  R  L  E  K  E  V  C  E  L  L  P  P  C  M  S  N  G  I  R  V  L  P  P  P  Y  G  V  D  S  A  W  Y  G  A  K  L  I  G  N  :  L  S  T  F  P  S  S  W  C  V  M  K  K  Q  F  R  H  R  S  R  R  K  F  M  W  *  L  L  L  Q  W  H  C  R  W  Y  C  Q  R  S  R  V  L  M  C  L  V  A  E  D  Q  L  L  H  Q  *  L  D  H  L  L  K  I  *  I  *  G  Y  L  Y  I  K  C  K  T  N  L  C  R  S  V  M  R  I  C  *  A  Y  D  V  Q  N  L  R  L  L  R  *  F  Q  M  E  *  I  S  V  S  W  T  S  R  L  I  I  K  E  H  L  F  Q  V  M  C  *  Y   </second_frame>
            <third_frame>   Q  L  K  T  V  R  P  S  P  I  S  *  L  E  P  C  H  N  N  H  G  Y  V  V  A  Q  G  M  G  I  R  I  Y  S  F  H  F  E  Q  F  H  L  N  F  D  L  D  C  Q  F  H  G  S  V  R  P  D  D  D  V  Y  T  D  G  V  H  R  R  I  *  S  D  S  V  R  Y  F  H  S  N  F  E  D  F  R  A  K  R  V  C  *  A  D  F  C  M  *  I  L  E  I  H  C  F  R  *  S  P  M  D  L  L  S  S  E  S  P  *  A  L  G  F  Y  F  F  L  *  N  S  L  E  I  W  T  S  *  V  N  S  F  L  Q  F  C  F  L  N  V  K  L  G  E  L  S  N  W  F  N  V  I  *  L  N  *  F  G  T  E  G  V  V  D  E  R  V  K  Y  R  *  G  Y  H  E  *  L  V  *  *  G  V  *  F  V  G  R  F  Q  I  Q  Y  Q  N  C  H  S  *  V  F  M  V  N  V  L  K  C  P  V  L  L  L  L  M  :  V  G  L  A  I  A  N  L  V  G  V  S  I  V  L  R  Q  G  D  Q  R  H  F  W :   S  L  A  T  L  N  L  Q  C  I  L  D  *  D  T  S  F  Q  R  Y  T  P   : G  C  R  *  K  L  Q  H  S  R  S  L  C  P  F  R  F  A  I  M  M  :  I  L  N  L  I  K  Q  L  E  R  S  *  K  T  R  S  I  L  H  Y  L  T  *  M  F  L  L  F  V  L  S  T  R :   L  F  *  L  Y  L  L  Q  G  K  F  Q  E  *  *  S  T  L  G  L  T  R  H  L  L  F  Q  :  F  S  T  V  K  S  C  T  K  *  V  W  K  L  W  E  L  E  H  *  S  L  Q  D  S  L  R  S  R  C  N  R  R  I  F  I  L  G  H  F  T  L  C  G  L  *  K  R :   T  F  V  I  L  H  L  I  M  K  L  N  Y  P  K  I  P  T  H  L  F  R  S  G  L  K  V  A  L  H  F  Q  K  S  A  L  K  Q  E  R  F  C  S  S  L  A  L  Q  E   : C  V  L  W  V  Y  R  M  L  W  R  C  A  W  S  T  A  M  T  L  N  *  W  L  M  I  A  G  T  K  Q  *  F  W  L  G  E  V  H  V  C  L  D  *  Q  :  K  D  *  R  R  K  C  V  N  F  F  L  H  A  *  V  M  E  S  E  Y  F  L  P  H  M  A  *  I  L  L  G  M  G  L  S  *  L  A  I :   *  A  P  S  P  V  P  G  V  *  *  K  S  N  F  V  I  G  R  D  A  S  L  C  G  D  Y  C  C  S  G  T  A  G  G  I  A  K  D  Q  E  F  *  C  A  S  W  L  K  I  N  Y  C  I  N  D  *  I  I  C  *  R  Y  K  Y  K  A  I  Y  T  S  S  V  R  L  I  Y  V  V  Q  S  C  G  S  A  K  H  M  M  Y  K  I  L  D  Y  *  G  S  S  K  W  S  E  Y  L  *  V  G  L  L  D  L  *  *  R  S  T  F  F  R  L  C  V  N  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101015" stop="101132"/>
                    <exon start="101304" stop="101374"/>
                    <exon start="101537" stop="101604"/>
                    <exon start="102165" stop="102226"/>
                    <exon start="102554" stop="102651"/>
                    <exon start="103362" stop="103443"/>
                    <exon start="103901" stop="104043"/>
                    <exon start="104742" stop="104890"/>
                    <exon start="105331" stop="105464"/>
                    <exon start="105638" stop="105756"/>
                    <exon start="106164" stop="106241"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAGLIRCMICRTFPNSVPELSFMSIYGQRAQVPGAIIIDGGSGYCKFGWSKYSAPSGRSATFLEFGNIESPMYSRLRHFFSTIYTRMQVKTSTQPIIVSIPICHYDDTESDKAARTQLKDAIHSALFDMNVPAVCAVNQAVLALFAARKVSGIVVNIGFNQTSIVPILYGKVMHQVGVEVVGIGALKLTGFLKEQMQQKNIYFGSLYTVRTLKENLCYIALDYEAELSKDTNASFQIGSEGCFTLSEERFKTGEILFQPRIAGVRAMGLQNAVALCMEHCHDAELMVDDSWYKTVVLAGGSACLPGLAERLEKEVCELLPPCMSNGIRVLPPPYGVDSAWYGAKLIGNLSTFPSSWCVMKKQFRHRSRRKFMW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100474" stop="100878"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLDPLPFHDWSRATTTMAMLLRKVWESVSTRSTSSNSTSTSISTVNSMDRFDQMMMYIQTASTGEFDRIPLDIFIQILKILGPKESAKLTSVCKSWKYIVSDNRLWIYFLQNHHEPWDSTFFSETHLRSGPLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="105083" e_stop="105464"/>
            <exon e_start="105638" e_stop="105756"/>
            <exon e_start="106164" e_stop="106540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105083" e_stop="105464" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.830">
            <gDNA_intron_boundary i_start="105465" i_stop="105637" i_length="173"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105638" e_stop="105756" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="105757" i_stop="106163" i_length="407"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="106164" e_stop="106540" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105083" stop="105437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105101" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105342" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105395" stop="105464"/>
              <exon start="105638" stop="105756"/>
              <exon start="106164" stop="106533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325798" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106164" stop="106540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106185" stop="106540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223825" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAATGGAGAGACAGATTTGTACTCAGGGCGGGTGGGGGCAGTTCTAGACATCGTATTCTCATTTTGAGTCTACACTCTACTATGGTCAACTGATGATGCCGGTTTCTTGACTTATATCATTTAGACAAAGTGGTGTTTTTGTGGATGCAACTGGTGAAACACAACTGACCCCCACCCCCCAATTACCTCAAAAAAGAACAAGGATCTGTAGTATGGAAAATTAGTAGATTTGCGGTCTTGTTTCAGGCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAG : AAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAAT : TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAGGTTATGTGTTAATACAA</gDNA_template>
            <first_frame> A  N  G  E  T  D  L  Y  S  G  R  V  G  A  V  L  D  I  V  F  S  F  *  V  Y  T  L  L  W  S  T  D  D  A  G  F  L  T  Y  I  I  *  T  K  W  C  F  C  G  C  N  W  *  N  T  T  D  P  H  P  P  I  T  S  K  K  N  K  D  L  *  Y  G  K  L  V  D  L  R  S  C  F  R  R  A  M  G  L  Q  N  A  V  A  L  C  M  E  H  C  H  D  A  E  L  M  V  D  D  S  W  Y  K  T  V  V  L  A  G  G  S  A  C  L  P  G  L  A   : E  R  L  E  K  E  V  C  E  L  L  P  P  C  M  S  N  G  I  R  V  L  P  P  P  Y  G  V  D  S  A  W  Y  G  A  K  L  I  G  N  :  L  S  T  F  P  S  S  W  C  V  M  K  K  Q  F  R  H  R  S  R  R  K  F  M  W  *  L  L  L  Q  W  H  C  R  W  Y  C  Q  R  S  R  V  L  M  C  L  V  A  E  D  Q  L  L  H  Q  *  L  D  H  L  L  K  I  *  I  *  G  Y  L  Y  I  K  C  K  T  N  L  C  R  S  V  M  R  I  C  *  A  Y  D  V  Q  N  L  R  L  L  R  *  F  Q  M  E  *  I  S  V  S  W  T  S  R  L  I  I  K  E  H  L  F  Q  V  M  C  *  Y   </first_frame>
            <second_frame>  R  M  E  R  Q  I  C  T  Q  G  G  W  G  Q  F  *  T  S  Y  S  H  F  E  S  T  L  Y  Y  G  Q  L  M  M  P  V  S  *  L  I  S  F  R  Q  S  G  V  F  V  D  A  T  G  E  T  Q  L  T  P  T  P  Q  L  P  Q  K  R  T  R  I  C  S  M  E  N  *  *  I  C  G  L  V  S  G  V  L  W  V  Y  R  M  L  W  R  C  A  W  S  T  A  M  T  L  N  *  W  L  M  I  A  G  T  K  Q  *  F  W  L  G  E  V  H  V  C  L  D  *  Q  :  K  D  *  R  R  K  C  V  N  F  F  L  H  A  *  V  M  E  S  E  Y  F  L  P  H  M  A  *  I  L  L  G  M  G  L  S  *  L  A  I :   *  A  P  S  P  V  P  G  V  *  *  K  S  N  F  V  I  G  R  D  A  S  L  C  G  D  Y  C  C  S  G  T  A  G  G  I  A  K  D  Q  E  F  *  C  A  S  W  L  K  I  N  Y  C  I  N  D  *  I  I  C  *  R  Y  K  Y  K  A  I  Y  T  S  S  V  R  L  I  Y  V  V  Q  S  C  G  S  A  K  H  M  M  Y  K  I  L  D  Y  *  G  S  S  K  W  S  E  Y  L  *  V  G  L  L  D  L  *  *  R  S  T  F  F  R  L  C  V  N  T  </second_frame>
            <third_frame>   E  W  R  D  R  F  V  L  R  A  G  G  G  S  S  R  H  R  I  L  I  L  S  L  H  S  T  M  V  N  *  *  C  R  F  L  D  L  Y  H  L  D  K  V  V  F  L  W  M  Q  L  V  K  H  N  *  P  P  P  P  N  Y  L  K  K  E  Q  G  S  V  V  W  K  I  S  R  F  A  V  L  F  Q  A  C  Y  G  F  T  E  C  C  G  A  V  H  G  A  L  P  *  R  *  I  N  G  *  *  *  L  V  Q  N  S  S  F  G  W  G  K  C  M  F  A  W  I  S  R :   K  I  R  E  G  S  V  *  T  S  S  S  M  H  E  *  W  N  Q  S  T  S  S  P  I  W  R  R  F  C  L  V  W  G  *  A  D  W  Q   : F  E  H  L  P  Q  F  L  V  C  D  E  K  A  I  S  S  *  V  E  T  Q  V  Y  V  V  I  T  V  A  V  A  L  Q  V  V  L  P  K  I  K  S  F  D  V  P  R  G  *  R  S  T  I  A  S  M  I  R  S  F  V  K  D  I  N  I  R  L  F  I  H  Q  V  *  D  *  F  M  S  F  S  H  A  D  L  L  S  I  *  C  T  K  S  *  I  I  E  V  V  P  N  G  V  N  I  C  K  L  D  F  *  T  Y  N  K  G  A  P  F  S  G  Y  V  L  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105296" stop="105464"/>
                    <exon start="105638" stop="105756"/>
                    <exon start="106164" stop="106241"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGKLVDLRSCFRRAMGLQNAVALCMEHCHDAELMVDDSWYKTVVLAGGSACLPGLAERLEKEVCELLPPCMSNGIRVLPPPYGVDSAWYGAKLIGNLSTFPSSWCVMKKQFRHRSRRKFMW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="100868" PGL_stop="100428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100868" e_stop="100428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="100868" e_stop="100428" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100868" stop="100428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277824" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCCAGATCTCAAGTGAGTTTCAGAGAAAAAAGTAGAATCCCAAGGCTCATGGTGATTCTGAAGAAAGTAAATCCATAGGCGATTATCGGAAACAATGTATTTCCAGGATTTACATACAGAAGTCAGCTTAGCAGACTCTTTTGGCCCTAAAATCTTCAAAATTTGAATGAAAATATCTAACGGAATCCGATCAAATTCTCCGGTGGACGCCGTCTGTATATACATCATCATCTGGTCGAACCGATCCATGGAATTGACAGTCGAGATCGAAGTTGAGGTGGAATTGCTCGAAGTGGAACGAGTAGATACGGATTCCCATACCTTGCGCAACAACATAGCCATGGTTGTTGTGGCACGGCTCCAGTCATGAAATGGGAGAGGGTCTAACAGTTTTTAGCTGAATAGTCACTCATTCTTCATGAAACTGAAACTCGTGTTT</gDNA_template>
            <first_frame> G  P  D  L  K  *  V  S  E  K  K  V  E  S  Q  G  S  W  *  F  *  R  K  *  I  H  R  R  L  S  E  T  M  Y  F  Q  D  L  H  T  E  V  S  L  A  D  S  F  G  P  K  I  F  K  I  *  M  K  I  S  N  G  I  R  S  N  S  P  V  D  A  V  C  I  Y  I  I  I  W  S  N  R  S  M  E  L  T  V  E  I  E  V  E  V  E  L  L  E  V  E  R  V  D  T  D  S  H  T  L  R  N  N  I  A  M  V  V  V  A  R  L  Q  S  *  N  G  R  G  S  N  S  F  *  L  N  S  H  S  F  F  M  K  L  K  L  V  F </first_frame>
            <second_frame>  V  Q  I  S  S  E  F  Q  R  K  K  *  N  P  K  A  H  G  D  S  E  E  S  K  S  I  G  D  Y  R  K  Q  C  I  S  R  I  Y  I  Q  K  S  A  *  Q  T  L  L  A  L  K  S  S  K  F  E  *  K  Y  L  T  E  S  D  Q  I  L  R  W  T  P  S  V  Y  T  S  S  S  G  R  T  D  P  W  N  *  Q  S  R  S  K  L  R  W  N  C  S  K  W  N  E  *  I  R  I  P  I  P  C  A  T  T  *  P  W  L  L  W  H  G  S  S  H  E  M  G  E  G  L  T  V  F  S  *  I  V  T  H  S  S  *  N  *  N  S  C   </second_frame>
            <third_frame>   S  R  S  Q  V  S  F  R  E  K  S  R  I  P  R  L  M  V  I  L  K  K  V  N  P  *  A  I  I  G  N  N  V  F  P  G  F  T  Y  R  S  Q  L  S  R  L  F  W  P  *  N  L  Q  N  L  N  E  N  I  *  R  N  P  I  K  F  S  G  G  R  R  L  Y  I  H  H  H  L  V  E  P  I  H  G  I  D  S  R  D  R  S  *  G  G  I  A  R  S  G  T  S  R  Y  G  F  P  Y  L  A  Q  Q  H  S  H  G  C  C  G  T  A  P  V  M  K  W  E  R  V  *  Q  F  L  A  E  *  S  L  I  L  H  E  T  E  T  R  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100700" stop="100497"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKISNGIRSNSPVDAVCIYIIIWSNRSMELTVEIEVEVELLEVERVDTDSHTLRNNIAMVVVARLQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="111628" PGL_stop="108813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111628" e_stop="111309"/>
            <exon e_start="111223" e_stop="111167"/>
            <exon e_start="109421" e_stop="108813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.000" e_score="0.986"/>
          <exon-intron don_prob="0.845" acc_prob="0.918" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="111628" e_stop="111309" e_length="320"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111308" i_stop="111224" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111223" e_stop="111167" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.845" acc_prob="0.918">
            <gDNA_intron_boundary i_start="111166" i_stop="109422" i_length="1745"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109421" e_stop="108813" e_length="609"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111628" stop="111309"/>
              <exon start="111223" stop="111167"/>
              <exon start="109421" stop="108956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111584" stop="111309"/>
              <exon start="111223" stop="111167"/>
              <exon start="109421" stop="109126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111584" stop="111309"/>
              <exon start="111223" stop="111167"/>
              <exon start="109421" stop="109218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111582" stop="111309"/>
              <exon start="111223" stop="111167"/>
              <exon start="109421" stop="109161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111556" stop="111309"/>
              <exon start="111223" stop="111167"/>
              <exon start="109421" stop="109102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111550" stop="111309"/>
              <exon start="111223" stop="111167"/>
              <exon start="109421" stop="109320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111485" stop="111309"/>
              <exon start="111223" stop="111167"/>
              <exon start="109421" stop="109060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111471" stop="111309"/>
              <exon start="111223" stop="111167"/>
              <exon start="109421" stop="108962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111471" stop="111309"/>
              <exon start="111223" stop="111167"/>
              <exon start="109421" stop="109041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111471" stop="111309"/>
              <exon start="111223" stop="111167"/>
              <exon start="109421" stop="109062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111359" stop="111309"/>
              <exon start="111223" stop="111167"/>
              <exon start="109421" stop="109077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109320" stop="108826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109320" stop="108826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109320" stop="108826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109280" stop="108882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109280" stop="108884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109280" stop="108917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109270" stop="108813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCTCCAGTATGAACTCAAACTTACTGTAAACAATTAGCTGGCAAGAACAGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAG : ATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAAC : CTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGACTCTCCTTGCTAAACCAAGGATCTGTTAAATATTATTTCACTTTGTTGTATTTTGAGCATGAACGATAGTAA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  Y  P  P  V  *  T  Q  T  Y  C  K  Q  L  A  G  K  N  R  D  N  L  C  S  K  G  K  R  T  D  R  S  L  S  I  S  V  F  F  S  K  I  T  F  F  L  V  L  C  *  N  L  L  P  R  T  H  L  L  A  F  I  F  *  Y  F  S  S  F  C  Y  N  G  V  Q  I  L  F  F  L  Y  F  S  T  V  F  F  L  H  F  S  F  S  F  S  L  F  I  R :   W  D  F  C  *  *  R  F  N  W  E  E  S  T  S  S  Q  E  T :   L  S  Y  Q  L  R  V  S  K  L  H  S  G  H  Y  P  M  Q  R  T  K  I  P  S  Q  T  M  L  *  S  P  C  G  V  C  V  S  L  F  R  I  R  E  *  F  D  N  *  L  C  L  Y  H  V  Q  L  H  *  P  S  R  E  V  P  T  W  S  F  R  Q  *  V  Q  *  R  Q  K  W  A  T  M  S  *  F  C  I  I  R  I  C  Q  C  *  *  *  S  Y  E  L  *  T  I  T  D  P  D  D  C  N  S  S  Y  G  L  L  L  V  A  S  L  K  I  S  S  R  F  W  R  S  F  C  I  L  Y  C  Q  I  L  F  E  L  R  I  F  F  Y  H  V  T  T  D  *  R  S  T  R  N  S  S  S  C  N  S  *  Y  I  T  T  A  N  C  *  Y  L  C  I  E  N  D  S  P  C  *  T  K  D  L  L  N  I  I  S  L  C  C  I  L  S  M  N  D  S   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  T  L  Q  Y  E  L  K  L  T  V  N  N  *  L  A  R  T  E  I  T  F  V  Q  R  E  R  E  Q  I  D  L  F  L  F  L  F  F  S  Q  R  S  L  F  F  W  F  F  V  E  I  F  F  Q  E  L  I  F  *  L  L  Y  S  D  I  L  A  H  F  A  I  M  G  C  R  Y  C  F  S  C  I  F  L  L  F  S  F  F  I  S  A  S  A  S  A  Y  L  S   : D  G  I  F  V  N  E  G  L  T  G  R  N  L  L  Q  A  K  K   : P  C  P  I  S  F  E  F  Q  N  Y  T  V  V  T  T  Q  C  K  G  P  K  Y  P  A  K  Q  C  C  E  A  L  A  E  F  A  C  P  Y  S  E  F  V  N  D  L  T  T  D  C  A  S  T  M  F  S  Y  I  N  L  H  G  K  Y  P  P  G  L  F  A  S  E  C  N  K  D  K  N  G  L  P  C  P  D  S  A  S  S  E  S  A  S  A  N  N  S  H  M  S  C  R  L  S  P  I  L  M  I  A  T  A  L  T  G  F  F  L  L  L  L  *  R  S  L  Q  G  F  G  V  V  S  V  F  F  I  V  K  Y  C  L  N  S  G  F  S  S  T  M  L  P  L  I  N  D  Q  Q  E  T  P  P  L  V  I  L  D  I  L  Q  Q  Q  T  V  D  T  C  V  L  K  M  T  L  L  A  K  P  R  I  C  *  I  L  F  H  F  V  V  F  *  A  *  T  I  V  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  L  P  S  S  M  N  S  N  L  L  *  T  I  S  W  Q  E  Q  R  *  P  L  F  K  G  K  E  N  R  *  I  S  F  Y  F  C  F  F  L  K  D  H  F  F  S  G  S  L  L  K  S  S  S  K  N  S  S  F  S  F  Y  I  L  I  F  *  L  I  L  L  *  W  G  A  D  I  V  F  L  V  F  F  Y  C  F  L  S  S  F  Q  L  Q  L  Q  L  I  Y  Q  :  M  G  F  L  L  M  K  V  *  L  G  G  I  Y  F  K  P  R  N  :  L  V  L  S  A  S  S  F  K  T  T  Q  W  S  L  P  N  A  K  D  Q  N  T  Q  P  N  N  V  V  K  P  L  R  S  L  R  V  P  I  Q  N  S  *  M  I  *  Q  L  I  V  P  L  P  C  S  A  T  L  T  F  T  G  S  T  H  L  V  F  S  P  V  S  A  I  K  T  K  M  G  Y  H  V  L  I  L  H  H  P  N  L  P  V  L  I  I  V  I  *  A  V  D  Y  H  R  S  *  *  L  Q  Q  L  L  R  A  S  S  C  C  F  S  E  D  L  F  K  V  L  A  *  F  L  Y  S  L  L  S  N  I  V  *  T  P  D  F  L  L  P  C  Y  H  *  L  T  I  N  K  K  L  L  L  L  *  F  L  I  Y  Y  N  S  K  L  L  I  L  V  Y  *  K  *  L  S  L  L  N  Q  G  S  V  K  Y  Y  F  T  L  L  Y  F  E  H  E  R  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111426" stop="111309"/>
                    <exon start="111223" stop="111167"/>
                    <exon start="109421" stop="109060"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYSDILAHFAIMGCRYCFSCIFLLFSFFISASASAYLSDGIFVNEGLTGRNLLQAKKPCPISFEFQNYTVVTTQCKGPKYPAKQCCEALAEFACPYSEFVNDLTTDCASTMFSYINLHGKYPPGLFASECNKDKNGLPCPDSASSESASANNSHMSCRLSPILMIATALTGFFLLLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109059" stop="108856"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSLQGFGVVSVFFIVKYCLNSGFSSTMLPLINDQQETPPLVILDILQQQTVDTCVLKMTLLAKPRIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="108847" PGL_stop="109402"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108847" e_stop="109402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="108847" e_stop="109402" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108847" stop="109402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATAATATTTAACAGATCCTTGGTTTAGCAAGGAGAGTCATTTTCAATACACAAGTATCAACAGTTTGCTGTTGTAATATATCAAGAATTACAAGAGGAGGAGTTTCTTGTTGATCGTTAATCAGTGGTAACATGGTAGAAGAAAATCCGGAGTTCAAACAATATTTGACAATAAAGAATACAGAAACTACGCCAAAACCTTGAAGAGATCTTCAGAGAAGCAACAAGAAGAAGCCCGTAAGAGCTGTTGCAATCATCAGGATCGGTGATAGTCTACAGCTCATATGACTATTATTAGCACTGGCAGATTCGGATGATGCAGAATCAGGACATGGTAGCCCATTTTTGTCTTTATTGCACTCACTGGCGAAAAGACCAGGTGGGTACTTCCCGTGAAGGTTAATGTAGCTGAACATGGTAGAGGCACAATCAGTTGTCAAATCATTCACGAATTCTGAATAGGGACACGCAAACTCCGCAAGGGCTTCACAACATTGTTTGGCTGGGTATTTTGGTCCTTTGCATTGGGTAGTGACCACTGTGTAGTTTTGAAAC</gDNA_template>
            <first_frame> K  *  Y  L  T  D  P  W  F  S  K  E  S  H  F  Q  Y  T  S  I  N  S  L  L  L  *  Y  I  K  N  Y  K  R  R  S  F  L  L  I  V  N  Q  W  *  H  G  R  R  K  S  G  V  Q  T  I  F  D  N  K  E  Y  R  N  Y  A  K  T  L  K  R  S  S  E  K  Q  Q  E  E  A  R  K  S  C  C  N  H  Q  D  R  *  *  S  T  A  H  M  T  I  I  S  T  G  R  F  G  *  C  R  I  R  T  W  *  P  I  F  V  F  I  A  L  T  G  E  K  T  R  W  V  L  P  V  K  V  N  V  A  E  H  G  R  G  T  I  S  C  Q  I  I  H  E  F  *  I  G  T  R  K  L  R  K  G  F  T  T  L  F  G  W  V  F  W  S  F  A  L  G  S  D  H  C  V  V  L  K  </first_frame>
            <second_frame>  N  N  I  *  Q  I  L  G  L  A  R  R  V  I  F  N  T  Q  V  S  T  V  C  C  C  N  I  S  R  I  T  R  G  G  V  S  C  *  S  L  I  S  G  N  M  V  E  E  N  P  E  F  K  Q  Y  L  T  I  K  N  T  E  T  T  P  K  P  *  R  D  L  Q  R  S  N  K  K  K  P  V  R  A  V  A  I  I  R  I  G  D  S  L  Q  L  I  *  L  L  L  A  L  A  D  S  D  D  A  E  S  G  H  G  S  P  F  L  S  L  L  H  S  L  A  K  R  P  G  G  Y  F  P  *  R  L  M  *  L  N  M  V  E  A  Q  S  V  V  K  S  F  T  N  S  E  *  G  H  A  N  S  A  R  A  S  Q  H  C  L  A  G  Y  F  G  P  L  H  W  V  V  T  T  V  *  F  *  N </second_frame>
            <third_frame>   I  I  F  N  R  S  L  V  *  Q  G  E  S  F  S  I  H  K  Y  Q  Q  F  A  V  V  I  Y  Q  E  L  Q  E  E  E  F  L  V  D  R  *  S  V  V  T  W  *  K  K  I  R  S  S  N  N  I  *  Q  *  R  I  Q  K  L  R  Q  N  L  E  E  I  F  R  E  A  T  R  R  S  P  *  E  L  L  Q  S  S  G  S  V  I  V  Y  S  S  Y  D  Y  Y  *  H  W  Q  I  R  M  M  Q  N  Q  D  M  V  A  H  F  C  L  Y  C  T  H  W  R  K  D  Q  V  G  T  S  R  E  G  *  C  S  *  T  W  *  R  H  N  Q  L  S  N  H  S  R  I  L  N  R  D  T  Q  T  P  Q  G  L  H  N  I  V  W  L  G  I  L  V  L  C  I  G  *  *  P  L  C  S  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0032F07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="117532" PGL_stop="112229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117532" e_stop="117190"/>
            <exon e_start="116300" e_stop="116188"/>
            <exon e_start="116080" e_stop="115668"/>
            <exon e_start="115588" e_stop="115328"/>
            <exon e_start="114834" e_stop="114757"/>
            <exon e_start="114654" e_stop="114550"/>
            <exon e_start="114443" e_stop="114394"/>
            <exon e_start="114299" e_stop="114200"/>
            <exon e_start="114083" e_stop="113985"/>
            <exon e_start="113902" e_stop="113789"/>
            <exon e_start="113684" e_stop="113525"/>
            <exon e_start="112735" e_stop="112347"/>
            <exon e_start="112236" e_stop="112229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.773" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.847"/>
          <exon-intron don_prob="0.828" acc_prob="1.000" e_score="0.981"/>
          <exon-intron don_prob="0.963" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.533" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.747" acc_prob="0.999" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117532" e_stop="117190" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.773">
            <gDNA_intron_boundary i_start="117189" i_stop="116301" i_length="889"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116300" e_stop="116188" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.866" acc_prob="0.948">
            <gDNA_intron_boundary i_start="116187" i_stop="116081" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="0.847">
            <gDNA_exon_boundary e_start="116080" e_stop="115668" e_length="413"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="115667" i_stop="115589" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="115588" e_stop="115328" e_length="261"/>
          </exon>
          <intron i_serial="4" don_prob="0.828" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115327" i_stop="114835" i_length="493"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114834" e_stop="114757" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="0.995">
            <gDNA_intron_boundary i_start="114756" i_stop="114655" i_length="102"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114654" e_stop="114550" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114549" i_stop="114444" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="114443" e_stop="114394" e_length="50"/>
          </exon>
          <intron i_serial="7" don_prob="0.943" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114393" i_stop="114300" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="114299" e_stop="114200" e_length="100"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.874">
            <gDNA_intron_boundary i_start="114199" i_stop="114084" i_length="116"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="114083" e_stop="113985" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113984" i_stop="113903" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="113902" e_stop="113789" e_length="114"/>
          </exon>
          <intron i_serial="10" don_prob="0.533" acc_prob="0.969">
            <gDNA_intron_boundary i_start="113788" i_stop="113685" i_length="104"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="113684" e_stop="113525" e_length="160"/>
          </exon>
          <intron i_serial="11" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="113524" i_stop="112736" i_length="789"/>
          </intron>
          <exon e_serial="12" e_score="0.992">
            <gDNA_exon_boundary e_start="112735" e_stop="112347" e_length="389"/>
          </exon>
          <intron i_serial="12" don_prob="0.747" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112346" i_stop="112237" i_length="110"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="112236" e_stop="112229" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117532" stop="117190"/>
              <exon start="116300" stop="116188"/>
              <exon start="116080" stop="115668"/>
              <exon start="115588" stop="115328"/>
              <exon start="114834" stop="114757"/>
              <exon start="114654" stop="114550"/>
              <exon start="114443" stop="114394"/>
              <exon start="114299" stop="114200"/>
              <exon start="114083" stop="113985"/>
              <exon start="113902" stop="113789"/>
              <exon start="113684" stop="113525"/>
              <exon start="112735" stop="112461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117523" stop="117190"/>
              <exon start="116300" stop="116188"/>
              <exon start="116080" stop="116057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117523" stop="117197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114275" stop="114200"/>
              <exon start="114083" stop="113985"/>
              <exon start="113902" stop="113789"/>
              <exon start="113684" stop="113525"/>
              <exon start="112735" stop="112347"/>
              <exon start="112236" stop="112229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736156" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGAGTGAGAGACAGAAAAAGATACTCTCTCCGCATCTATACATATAGAGAGGGAAAACCTATATTTATAGAGAGAGAAACTCTAGAGAGAGAAAAAGCCATGTATGTGTATATATAGGCTATATAGATTACAGTGAAAAAAACTTTCTTTTTCATTCCTCCATTATTCGTTCATTCTCTCAGCTCAAAGACCACAGAATTTTCAAGAAATTTATGACGTTTTGAAGTTAAAGTTTTGGTTTTTTTCCAGATTTTTCTCGGAATTTATGATTTCAGAGAAAAAAAATCAATGCAAAAGCTCCGTTTAATGGTCGATTTAGCTTGCGTTTTGTTAGGGTTCAG : TAGTGAAACTTGAGCTCGGATGGTTTTCCTGCGGAACAGCATAGATTGCTTTAAACGTTAAGAGCCACATTTCCTTCGTTATTCTTACATCCTCTTTGTTGGAAGGATGTCAG : AATGGTTGGATGCATATGATGACGTAAGAGAAAGAAGATCAGACTTCGAGGTTTCAGAGGATGAAAGACGACGTTCACGAATTGGTACTTTCAAGAAAAAGGCATTACATGCTTCAAACAAGTTCACCCACTCTCTGAAGAAAAGAGGAAAAAGGAAAGTGGACTACAGGTTCCCTTCAGTTTCAATAGAGGATGTACGTGATGCAAAAGAGGAGAATGCTGTCTGTGAATTGCGTCAAAGGCTGCTAGAGCGGAATTTGTTGCCATCCATACATGATGACTACCATACATTGTTGAGGTGCATTTTTTTTCTGAAAAATTATTCGGCTGATTTTTCATGTGTGAACCCCTAGGTAGCAATGACAGTTTTCATTGGAAATATGGATGAAGAAGCAGTATTATTTGATGAAGTT : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCCGAAAAACTAATGCGGTATAACCACAATTGATCGCTACATAAAATATCATGTCCAAGAATTTGAAAGGGCACTACATGAGAAGTTCCCTGCATGTTCTGTTGCTGCAAAGAAAAGAATCTGCACAACAACTACAATTTTGGATGTGCAAGGCTTA : GGGATTAAGAATTTCACAAGGACAGCTGCTAGTCTTTTGGCGGCCATGGCAAAAATTGATAATAGCTATTATCCTGAG : ACACTGCATCGGATGTTCATTGTCAATGCTGGCCCTGGCTTCAAAAAGATGCTCTGGCCAGCAGCTCAAAAATTTCTGGATGCAAAGACTATTGCAAAGATACAG : GTGCTCGATCCCAAATCCTTGGGTAAACTACATGAAGTTATTGACCCAAG : TCAATTGCCTGACTTTTTAGGTGGCTCTTGTACCTGTTCTGACGAGGGTGGTTGCCTCAGGTCTAACAAGGGTCCATGGAGTGATCCTGAAGTAATGAAG : CTTGTCTATAATGTAGAGGCAACAACTGTGAAGGAAATCTCTAGAAAACTTGGTGACCAAAGGAAAATTGAATCCTATATACAAATACGCCCTTCAAAG : GGAAGGAGCAGAGACACATCCACAAGTGATTCAGTATCGGATGCTGCTGACTTGTGTTCACCAATTAGAGGAAATAGTAGCTCAATTTTGAGGCTGACCCCAGTAGATGAAGAA : GCTAGGTCATCAGATTCAACAGCCTATTGTAGCTGTGATGATGAATTCAGCCTGGGTGATCGAGGTGTCACTAATGAGCATGGATTGCTGCATTGGCAAGAGCAGTCTCCTGTGAGCAGTCCAATGAATCGGTCCACTAATACATTGCCTCATTCTGGAG : GTACCTGGGCAATAAATTGGTGTGAAAGAATCCAAGAGAAGATTCTGAGCAGCTGTTTCAGTTGTTTGGAAAGGAAACTGATTCCTTTCATACTTAAACTCTTTGCATTTATTCGTAGTCTTCCCTTCGAGTACTGGAGGAAACGGACAAATGTTTTTCCGACTAATGCATTGGAAGAACGACAAGGGAGCAGTTCATCCATTAATGATGAAGCAGTTCAAAGAGTAAGGGAGATCCATCCATGCATGCAGCGTCTTCATAAATTGGAAAATTTATTGGAAGAAATAAACAAAAAGCCCGCTGAGATCCCAGCAGAGAAGGATCGAATGCTTCATCAGTCACTTAACAGGATCAAGTCTGTAGAAGTTGACCTAGAAAAAACAAAAAGG : GTATTGCA</gDNA_template>
            <first_frame> V  E  *  E  T  E  K  D  T  L  S  A  S  I  H  I  E  R  E  N  L  Y  L  *  R  E  K  L  *  R  E  K  K  P  C  M  C  I  Y  R  L  Y  R  L  Q  *  K  K  L  S  F  S  F  L  H  Y  S  F  I  L  S  A  Q  R  P  Q  N  F  Q  E  I  Y  D  V  L  K  L  K  F  W  F  F  S  R  F  F  S  E  F  M  I  S  E  K  K  N  Q  C  K  S  S  V  *  W  S  I  *  L  A  F  C  *  G  S   : V  V  K  L  E  L  G  W  F  S  C  G  T  A  *  I  A  L  N  V  K  S  H  I  S  F  V  I  L  T  S  S  L  L  E  G  C  Q  :  N  G  W  M  H  M  M  T  *  E  K  E  D  Q  T  S  R  F  Q  R  M  K  D  D  V  H  E  L  V  L  S  R  K  R  H  Y  M  L  Q  T  S  S  P  T  L  *  R  K  E  E  K  G  K  W  T  T  G  S  L  Q  F  Q  *  R  M  Y  V  M  Q  K  R  R  M  L  S  V  N  C  V  K  G  C  *  S  G  I  C  C  H  P  Y  M  M  T  T  I  H  C  *  G  A  F  F  F  *  K  I  I  R  L  I  F  H  V  *  T  P  R  *  Q  *  Q  F  S  L  E  I  W  M  K  K  Q  Y  Y  L  M  K  L :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  I  R  K  T  N  A  V  *  P  Q  L  I  A  T  *  N  I  M  S  K  N  L  K  G  H  Y  M  R  S  S  L  H  V  L  L  L  Q  R  K  E  S  A  Q  Q  L  Q  F  W  M  C  K  A  * :   G  L  R  I  S  Q  G  Q  L  L  V  F  W  R  P  W  Q  K  L  I  I  A  I  I  L  R :   H  C  I  G  C  S  L  S  M  L  A  L  A  S  K  R  C  S  G  Q  Q  L  K  N  F  W  M  Q  R  L  L  Q  R  Y  R :   C  S  I  P  N  P  W  V  N  Y  M  K  L  L  T  Q   : V  N  C  L  T  F  *  V  A  L  V  P  V  L  T  R  V  V  A  S  G  L  T  R  V  H  G  V  I  L  K  *  *  S :   L  S  I  M  *  R  Q  Q  L  *  R  K  S  L  E  N  L  V  T  K  G  K  L  N  P  I  Y  K  Y  A  L  Q  R :   E  G  A  E  T  H  P  Q  V  I  Q  Y  R  M  L  L  T  C  V  H  Q  L  E  E  I  V  A  Q  F  *  G  *  P  Q  *  M  K  K :   L  G  H  Q  I  Q  Q  P  I  V  A  V  M  M  N  S  A  W  V  I  E  V  S  L  M  S  M  D  C  C  I  G  K  S  S  L  L  *  A  V  Q  *  I  G  P  L  I  H  C  L  I  L  E  :  V  P  G  Q  *  I  G  V  K  E  S  K  R  R  F  *  A  A  V  S  V  V  W  K  G  N  *  F  L  S  Y  L  N  S  L  H  L  F  V  V  F  P  S  S  T  G  G  N  G  Q  M  F  F  R  L  M  H  W  K  N  D  K  G  A  V  H  P  L  M  M  K  Q  F  K  E  *  G  R  S  I  H  A  C  S  V  F  I  N  W  K  I  Y  W  K  K  *  T  K  S  P  L  R  S  Q  Q  R  R  I  E  C  F  I  S  H  L  T  G  S  S  L  *  K  L  T  *  K  K  Q  K  G :   Y  C  </first_frame>
            <second_frame>  L  S  E  R  Q  K  K  I  L  S  P  H  L  Y  I  *  R  G  K  T  Y  I  Y  R  E  R  N  S  R  E  R  K  S  H  V  C  V  Y  I  G  Y  I  D  Y  S  E  K  N  F  L  F  H  S  S  I  I  R  S  F  S  Q  L  K  D  H  R  I  F  K  K  F  M  T  F  *  S  *  S  F  G  F  F  P  D  F  S  R  N  L  *  F  Q  R  K  K  I  N  A  K  A  P  F  N  G  R  F  S  L  R  F  V  R  V  Q  :  *  *  N  L  S  S  D  G  F  P  A  E  Q  H  R  L  L  *  T  L  R  A  T  F  P  S  L  F  L  H  P  L  C  W  K  D  V  R :   M  V  G  C  I  *  *  R  K  R  K  K  I  R  L  R  G  F  R  G  *  K  T  T  F  T  N  W  Y  F  Q  E  K  G  I  T  C  F  K  Q  V  H  P  L  S  E  E  K  R  K  K  E  S  G  L  Q  V  P  F  S  F  N  R  G  C  T  *  C  K  R  G  E  C  C  L  *  I  A  S  K  A  A  R  A  E  F  V  A  I  H  T  *  *  L  P  Y  I  V  E  V  H  F  F  S  E  K  L  F  G  *  F  F  M  C  E  P  L  G  S  N  D  S  F  H  W  K  Y  G  *  R  S  S  I  I  *  *  S   : C  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  S  E  K  L  M  R  Y  N  H  N  *  S  L  H  K  I  S  C  P  R  I  *  K  G  T  T  *  E  V  P  C  M  F  C  C  C  K  E  K  N  L  H  N  N  Y  N  F  G  C  A  R  L   : R  D  *  E  F  H  K  D  S  C  *  S  F  G  G  H  G  K  N  *  *  *  L  L  S  *   : D  T  A  S  D  V  H  C  Q  C  W  P  W  L  Q  K  D  A  L  A  S  S  S  K  I  S  G  C  K  D  Y  C  K  D  T   : G  A  R  S  Q  I  L  G  *  T  T  *  S  Y  *  P  K  :  S  I  A  *  L  F  R  W  L  L  Y  L  F  *  R  G  W  L  P  Q  V  *  Q  G  S  M  E  *  S  *  S  N  E   : A  C  L  *  C  R  G  N  N  C  E  G  N  L  *  K  T  W  *  P  K  E  N  *  I  L  Y  T  N  T  P  F  K   : G  K  E  Q  R  H  I  H  K  *  F  S  I  G  C  C  *  L  V  F  T  N  *  R  K  *  *  L  N  F  E  A  D  P  S  R  *  R   : S  *  V  I  R  F  N  S  L  L  *  L  *  *  *  I  Q  P  G  *  S  R  C  H  *  *  A  W  I  A  A  L  A  R  A  V  S  C  E  Q  S  N  E  S  V  H  *  Y  I  A  S  F  W  R :   Y  L  G  N  K  L  V  *  K  N  P  R  E  D  S  E  Q  L  F  Q  L  F  G  K  E  T  D  S  F  H  T  *  T  L  C  I  Y  S  *  S  S  L  R  V  L  E  E  T  D  K  C  F  S  D  *  C  I  G  R  T  T  R  E  Q  F  I  H  *  *  *  S  S  S  K  S  K  G  D  P  S  M  H  A  A  S  S  *  I  G  K  F  I  G  R  N  K  Q  K  A  R  *  D  P  S  R  E  G  S  N  A  S  S  V  T  *  Q  D  Q  V  C  R  S  *  P  R  K  N  K  K   : G  I  A </second_frame>
            <third_frame>   *  V  R  D  R  K  R  Y  S  L  R  I  Y  T  Y  R  E  G  K  P  I  F  I  E  R  E  T  L  E  R  E  K  A  M  Y  V  Y  I  *  A  I  *  I  T  V  K  K  T  F  F  F  I  P  P  L  F  V  H  S  L  S  S  K  T  T  E  F  S  R  N  L  *  R  F  E  V  K  V  L  V  F  F  Q  I  F  L  G  I  Y  D  F  R  E  K  K  S  M  Q  K  L  R  L  M  V  D  L  A  C  V  L  L  G  F  S :   S  E  T  *  A  R  M  V  F  L  R  N  S  I  D  C  F  K  R  *  E  P  H  F  L  R  Y  S  Y  I  L  F  V  G  R  M  S   : E  W  L  D  A  Y  D  D  V  R  E  R  R  S  D  F  E  V  S  E  D  E  R  R  R  S  R  I  G  T  F  K  K  K  A  L  H  A  S  N  K  F  T  H  S  L  K  K  R  G  K  R  K  V  D  Y  R  F  P  S  V  S  I  E  D  V  R  D  A  K  E  E  N  A  V  C  E  L  R  Q  R  L  L  E  R  N  L  L  P  S  I  H  D  D  Y  H  T  L  L  R  C  I  F  F  L  K  N  Y  S  A  D  F  S  C  V  N  P  *  V  A  M  T  V  F  I  G  N  M  D  E  E  A  V  L  F  D  E  V  :  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  N  P  K  N  *  C  G  I  T  T  I  D  R  Y  I  K  Y  H  V  Q  E  F  E  R  A  L  H  E  K  F  P  A  C  S  V  A  A  K  K  R  I  C  T  T  T  T  I  L  D  V  Q  G  L  :  G  I  K  N  F  T  R  T  A  A  S  L  L  A  A  M  A  K  I  D  N  S  Y  Y  P  E  :  T  L  H  R  M  F  I  V  N  A  G  P  G  F  K  K  M  L  W  P  A  A  Q  K  F  L  D  A  K  T  I  A  K  I  Q  :  V  L  D  P  K  S  L  G  K  L  H  E  V  I  D  P  S :   Q  L  P  D  F  L  G  G  S  C  T  C  S  D  E  G  G  C  L  R  S  N  K  G  P  W  S  D  P  E  V  M  K  :  L  V  Y  N  V  E  A  T  T  V  K  E  I  S  R  K  L  G  D  Q  R  K  I  E  S  Y  I  Q  I  R  P  S  K  :  G  R  S  R  D  T  S  T  S  D  S  V  S  D  A  A  D  L  C  S  P  I  R  G  N  S  S  S  I  L  R  L  T  P  V  D  E  E  :  A  R  S  S  D  S  T  A  Y  C  S  C  D  D  E  F  S  L  G  D  R  G  V  T  N  E  H  G  L  L  H  W  Q  E  Q  S  P  V  S  S  P  M  N  R  S  T  N  T  L  P  H  S  G   : G  T  W  A  I  N  W  C  E  R  I  Q  E  K  I  L  S  S  C  F  S  C  L  E  R  K  L  I  P  F  I  L  K  L  F  A  F  I  R  S  L  P  F  E  Y  W  R  K  R  T  N  V  F  P  T  N  A  L  E  E  R  Q  G  S  S  S  S  I  N  D  E  A  V  Q  R  V  R  E  I  H  P  C  M  Q  R  L  H  K  L  E  N  L  L  E  E  I  N  K  K  P  A  E  I  P  A  E  K  D  R  M  L  H  Q  S  L  N  R  I  K  S  V  E  V  D  L  E  K  T  K  R  :  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115471" stop="115328"/>
                    <exon start="114834" stop="114757"/>
                    <exon start="114654" stop="114550"/>
                    <exon start="114443" stop="114394"/>
                    <exon start="114299" stop="114200"/>
                    <exon start="114083" stop="113985"/>
                    <exon start="113902" stop="113789"/>
                    <exon start="113684" stop="113525"/>
                    <exon start="112735" stop="112347"/>
                    <exon start="112236" stop="112231"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGITTIDRYIKYHVQEFERALHEKFPACSVAAKKRICTTTTILDVQGLGIKNFTRTAASLLAAMAKIDNSYYPETLHRMFIVNAGPGFKKMLWPAAQKFLDAKTIAKIQVLDPKSLGKLHEVIDPSQLPDFLGGSCTCSDEGGCLRSNKGPWSDPEVMKLVYNVEATTVKEISRKLGDQRKIESYIQIRPSKGRSRDTSTSDSVSDAADLCSPIRGNSSSILRLTPVDEEARSSDSTAYCSCDDEFSLGDRGVTNEHGLLHWQEQSPVSSPMNRSTNTLPHSGGTWAINWCERIQEKILSSCFSCLERKLIPFILKLFAFIRSLPFEYWRKRTNVFPTNALEERQGSSSSINDEAVQRVREIHPCMQRLHKLENLLEEINKKPAEIPAEKDRMLHQSLNRIKSVEVDLEKTKRVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116239" stop="116188"/>
                    <exon start="116080" stop="115728"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPHFLRYSYILFVGRMSEWLDAYDDVRERRSDFEVSEDERRRSRIGTFKKKALHASNKFTHSLKKRGKRKVDYRFPSVSIEDVRDAKEENAVCELRQRLLERNLLPSIHDDYHTLLRCIFFLKNYSADFSCVNP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="121968" PGL_stop="117559"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121968" e_stop="121924"/>
            <exon e_start="120756" e_stop="120665"/>
            <exon e_start="120267" e_stop="120140"/>
            <exon e_start="119360" e_stop="119256"/>
            <exon e_start="119165" e_stop="118843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.926" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121968" e_stop="121924" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121923" i_stop="120757" i_length="1167"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120756" e_stop="120665" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120664" i_stop="120268" i_length="397"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120267" e_stop="120140" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="120139" i_stop="119361" i_length="779"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119360" e_stop="119256" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.926">
            <gDNA_intron_boundary i_start="119255" i_stop="119166" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="119165" e_stop="118843" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121968" stop="121924"/>
              <exon start="120756" stop="120665"/>
              <exon start="120267" stop="120140"/>
              <exon start="119360" stop="119256"/>
              <exon start="119165" stop="118843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121959" stop="121924"/>
              <exon start="120756" stop="120665"/>
              <exon start="120267" stop="120140"/>
              <exon start="119360" stop="119256"/>
              <exon start="119165" stop="118864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121949" stop="121924"/>
              <exon start="120756" stop="120665"/>
              <exon start="120267" stop="120140"/>
              <exon start="119360" stop="119256"/>
              <exon start="119165" stop="118955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121949" stop="121924"/>
              <exon start="120756" stop="120665"/>
              <exon start="120267" stop="120140"/>
              <exon start="119360" stop="119256"/>
              <exon start="119165" stop="118955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121948" stop="121924"/>
              <exon start="120756" stop="120665"/>
              <exon start="120267" stop="120140"/>
              <exon start="119360" stop="119256"/>
              <exon start="119165" stop="119035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121948" stop="121924"/>
              <exon start="120756" stop="120665"/>
              <exon start="120267" stop="120140"/>
              <exon start="119360" stop="119263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120140"/>
              <exon start="119360" stop="119256"/>
              <exon start="119165" stop="119115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTGCAGCCTCCATCAAAAACTCTCTTCTCTCGAAAGAAAAAG : TGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAG : GCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAG : GTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAG : GTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGCATGGTGCACAATTTATAGATATTGGTGTTTCTTGTTTTCTGGTATATTGCCTTTTAAGTTTTTGACTGGTTAACGATTTATCATTTGGTGAAACTTAAGATATGTTTTTGTT</gDNA_template>
            <first_frame> S  L  Q  P  P  S  K  T  L  F  S  R  K  K  K  :  *  *  V  S  Q  I  R  Y  G  F  K  E  D  S  E  G  I  E  G  L  A  E  R  P  P  C  F  L  Q  C  R :   P  C  R  S  G  Y  V  P  L  A  S  Y  H  N  G  S  I  *  Q  S  V  F  W  G  C  F  P  C  I  Y  P  F  P  S  R  L  S  F  Q  A  P  K   : G  L  F  Q  N  Q  G  F  P  P  K  H  Q  Q  *  W  *  Y  L  S  *  Y  P  K  G  T  M  E  P  C  S  Y  C  I  Q   : G  A  A  F  Y  L  L  F  A  Y  *  S  Q  S  R  *  S  F  S  A  R  D  C  S  H  V  Q  D  G  *  T  E  V  *  E  Y  C  Q  I  M  D  P  E  I  R  N  G  L  N  T  S  V  S  T  F  M  N  I  I  E  P  L  F  Y  S  S  K  *  T  *  A  W  C  T  I  Y  R  Y  W  C  F  L  F  S  G  I  L  P  F  K  F  L  T  G  *  R  F  I  I  W  *  N  L  R  Y  V  F  V </first_frame>
            <second_frame>  V  C  S  L  H  Q  K  L  S  S  L  E  R  K  S :   D  K  S  R  K  F  V  M  A  S  K  R  I  Q  K  E  L  K  D  L  Q  K  D  P  P  A  S  C  S  A   : G  P  V  G  Q  D  M  F  H  W  Q  A  T  I  M  G  P  S  D  S  P  F  S  G  G  V  F  L  A  S  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  S  F  K  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  V  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  R  P  K  Y  E  S  T  A  R  S  W  T  Q  K  Y  A  M  G  *  T  H  L  F  L  L  S  *  I  S  S  N  L  Y  S  I  V  V  N  K  L  R  H  G  A  Q  F  I  D  I  G  V  S  C  F  L  V  Y  C  L  L  S  F  *  L  V  N  D  L  S  F  G  E  T  *  D  M  F  L   </second_frame>
            <third_frame>   F  A  A  S  I  K  N  S  L  L  S  K  E  K   : V  I  S  L  A  N  S  L  W  L  Q  R  G  F  R  R  N  *  R  T  C  R  K  T  P  L  L  P  A  V  Q  :  A  L  *  V  R  I  C  S  I  G  K  L  P  *  W  V  H  L  T  V  R  F  L  G  V  F  S  L  H  L  S  I  S  L  Q  I  I  L  S  S  P  Q  R :   S  L  S  K  P  R  F  S  T  Q  T  S  T  V  M  V  V  F  V  L  I  S  *  R  N  N  G  A  L  L  L  L  Y  P  R :   C  C  F  L  F  A  L  C  L  L  I  P  I  Q  M  I  L  *  C  Q  R  L  L  T  C  T  R  R  I  D  R  S  M  R  V  L  P  D  H  G  P  R  N  T  Q  W  V  E  H  I  C  F  Y  F  H  E  Y  H  R  T  F  I  L  *  *  *  I  N  L  G  M  V  H  N  L  *  I  L  V  F  L  V  F  W  Y  I  A  F  *  V  F  D  W  L  T  I  Y  H  L  V  K  L  K  I  C  F  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121967" stop="121924"/>
                    <exon start="120756" stop="120665"/>
                    <exon start="120267" stop="120140"/>
                    <exon start="119360" stop="119256"/>
                    <exon start="119165" stop="119022"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCSLHQKLSSLERKSDKSRKFVMASKRIQKELKDLQKDPPASCSAGPVGQDMFHWQATIMGPSDSPFSGGVFLASIHFPPDYPFKPPKVSFKTKVFHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYESTARSWTQKYAMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="121966" e_stop="121924"/>
            <exon e_start="120756" e_stop="120665"/>
            <exon e_start="120267" e_stop="120140"/>
            <exon e_start="119360" e_stop="119256"/>
            <exon e_start="119165" e_stop="118844"/>
            <exon e_start="117611" e_stop="117559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.308" e_score="1.000"/>
          <exon-only e_score="0.660"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121966" e_stop="121924" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121923" i_stop="120757" i_length="1167"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120756" e_stop="120665" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120664" i_stop="120268" i_length="397"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120267" e_stop="120140" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="120139" i_stop="119361" i_length="779"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119360" e_stop="119256" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.926">
            <gDNA_intron_boundary i_start="119255" i_stop="119166" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="119165" e_stop="118844" e_length="322"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.308">
            <gDNA_intron_boundary i_start="118843" i_stop="117612" i_length="1232"/>
          </intron>
          <exon e_serial="6" e_score="0.660">
            <gDNA_exon_boundary e_start="117611" e_stop="117559" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121966" stop="121924"/>
              <exon start="120756" stop="120665"/>
              <exon start="120267" stop="120140"/>
              <exon start="119360" stop="119256"/>
              <exon start="119165" stop="118844"/>
              <exon start="117611" stop="117559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121959" stop="121924"/>
              <exon start="120756" stop="120665"/>
              <exon start="120267" stop="120140"/>
              <exon start="119360" stop="119256"/>
              <exon start="119165" stop="118864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121949" stop="121924"/>
              <exon start="120756" stop="120665"/>
              <exon start="120267" stop="120140"/>
              <exon start="119360" stop="119256"/>
              <exon start="119165" stop="118955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121949" stop="121924"/>
              <exon start="120756" stop="120665"/>
              <exon start="120267" stop="120140"/>
              <exon start="119360" stop="119256"/>
              <exon start="119165" stop="118955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121948" stop="121924"/>
              <exon start="120756" stop="120665"/>
              <exon start="120267" stop="120140"/>
              <exon start="119360" stop="119256"/>
              <exon start="119165" stop="119035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121948" stop="121924"/>
              <exon start="120756" stop="120665"/>
              <exon start="120267" stop="120140"/>
              <exon start="119360" stop="119263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120140"/>
              <exon start="119360" stop="119256"/>
              <exon start="119165" stop="119115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGCAGCCTCCATCAAAAACTCTCTTCTCTCGAAAGAAAAAG : TGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAG : GCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAG : GTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAG : GTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGCATGGTGCACAATTTATAGATATTGGTGTTTCTTGTTTTCTGGTATATTGCCTTTTAAGTTTTTGACTGGTTAACGATTTATCATTTGGTGAAACTTAAGATATGTTTTTGT : TGACACGTAAAGATTACAAGAAAAATAGAAAAAGCAAATAAGAATAATAAAAA</gDNA_template>
            <first_frame> F  A  A  S  I  K  N  S  L  L  S  K  E  K   : V  I  S  L  A  N  S  L  W  L  Q  R  G  F  R  R  N  *  R  T  C  R  K  T  P  L  L  P  A  V  Q  :  A  L  *  V  R  I  C  S  I  G  K  L  P  *  W  V  H  L  T  V  R  F  L  G  V  F  S  L  H  L  S  I  S  L  Q  I  I  L  S  S  P  Q  R :   S  L  S  K  P  R  F  S  T  Q  T  S  T  V  M  V  V  F  V  L  I  S  *  R  N  N  G  A  L  L  L  L  Y  P  R :   C  C  F  L  F  A  L  C  L  L  I  P  I  Q  M  I  L  *  C  Q  R  L  L  T  C  T  R  R  I  D  R  S  M  R  V  L  P  D  H  G  P  R  N  T  Q  W  V  E  H  I  C  F  Y  F  H  E  Y  H  R  T  F  I  L  *  *  *  I  N  L  G  M  V  H  N  L  *  I  L  V  F  L  V  F  W  Y  I  A  F  *  V  F  D  W  L  T  I  Y  H  L  V  K  L  K  I  C  F  C  :  *  H  V  K  I  T  R  K  I  E  K  A  N  K  N  N  K   </first_frame>
            <second_frame>  L  Q  P  P  S  K  T  L  F  S  R  K  K  K  :  *  *  V  S  Q  I  R  Y  G  F  K  E  D  S  E  G  I  E  G  L  A  E  R  P  P  C  F  L  Q  C  R :   P  C  R  S  G  Y  V  P  L  A  S  Y  H  N  G  S  I  *  Q  S  V  F  W  G  C  F  P  C  I  Y  P  F  P  S  R  L  S  F  Q  A  P  K   : G  L  F  Q  N  Q  G  F  P  P  K  H  Q  Q  *  W  *  Y  L  S  *  Y  P  K  G  T  M  E  P  C  S  Y  C  I  Q   : G  A  A  F  Y  L  L  F  A  Y  *  S  Q  S  R  *  S  F  S  A  R  D  C  S  H  V  Q  D  G  *  T  E  V  *  E  Y  C  Q  I  M  D  P  E  I  R  N  G  L  N  T  S  V  S  T  F  M  N  I  I  E  P  L  F  Y  S  S  K  *  T  *  A  W  C  T  I  Y  R  Y  W  C  F  L  F  S  G  I  L  P  F  K  F  L  T  G  *  R  F  I  I  W  *  N  L  R  Y  V  F  V :   D  T  *  R  L  Q  E  K  *  K  K  Q  I  R  I  I  K  </second_frame>
            <third_frame>   C  S  L  H  Q  K  L  S  S  L  E  R  K  S :   D  K  S  R  K  F  V  M  A  S  K  R  I  Q  K  E  L  K  D  L  Q  K  D  P  P  A  S  C  S  A   : G  P  V  G  Q  D  M  F  H  W  Q  A  T  I  M  G  P  S  D  S  P  F  S  G  G  V  F  L  A  S  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  S  F  K  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  V  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  R  P  K  Y  E  S  T  A  R  S  W  T  Q  K  Y  A  M  G  *  T  H  L  F  L  L  S  *  I  S  S  N  L  Y  S  I  V  V  N  K  L  R  H  G  A  Q  F  I  D  I  G  V  S  C  F  L  V  Y  C  L  L  S  F  *  L  V  N  D  L  S  F  G  E  T  *  D  M  F  L   : L  T  R  K  D  Y  K  K  N  R  K  S  K  *  E  *  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121964" stop="121924"/>
                    <exon start="120756" stop="120665"/>
                    <exon start="120267" stop="120140"/>
                    <exon start="119360" stop="119256"/>
                    <exon start="119165" stop="119022"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSLHQKLSSLERKSDKSRKFVMASKRIQKELKDLQKDPPASCSAGPVGQDMFHWQATIMGPSDSPFSGGVFLASIHFPPDYPFKPPKVSFKTKVFHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYESTARSWTQKYAMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="129165" PGL_stop="122715"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129126" e_stop="128960"/>
            <exon e_start="127563" e_stop="127478"/>
            <exon e_start="125562" e_stop="125417"/>
            <exon e_start="125271" e_stop="125248"/>
            <exon e_start="124575" e_stop="124456"/>
            <exon e_start="124383" e_stop="124255"/>
            <exon e_start="123495" e_stop="123352"/>
            <exon e_start="123240" e_stop="122715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.759" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="129126" e_stop="128960" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128959" i_stop="127564" i_length="1396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127563" e_stop="127478" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.759">
            <gDNA_intron_boundary i_start="127477" i_stop="125563" i_length="1915"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="125562" e_stop="125417" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="125416" i_stop="125272" i_length="145"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="125271" e_stop="125248" e_length="24"/>
          </exon>
          <intron i_serial="4" don_prob="0.899" acc_prob="0.783">
            <gDNA_intron_boundary i_start="125247" i_stop="124576" i_length="672"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="124575" e_stop="124456" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.990">
            <gDNA_intron_boundary i_start="124455" i_stop="124384" i_length="72"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="124383" e_stop="124255" e_length="129"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="124254" i_stop="123496" i_length="759"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="123495" e_stop="123352" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="123351" i_stop="123241" i_length="111"/>
          </intron>
          <exon e_serial="8" e_score="0.981">
            <gDNA_exon_boundary e_start="123240" e_stop="122715" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129126" stop="128960"/>
              <exon start="127563" stop="127478"/>
              <exon start="125562" stop="125417"/>
              <exon start="125271" stop="125248"/>
              <exon start="124575" stop="124475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129091" stop="128960"/>
              <exon start="127563" stop="127478"/>
              <exon start="125562" stop="125487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124560" stop="124456"/>
              <exon start="124383" stop="124255"/>
              <exon start="123495" stop="123352"/>
              <exon start="123240" stop="122981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124503" stop="124456"/>
              <exon start="124383" stop="124255"/>
              <exon start="123495" stop="123352"/>
              <exon start="123240" stop="122790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123426" stop="123352"/>
              <exon start="123240" stop="122715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123089" stop="122715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122971" stop="122743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA : GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG : AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAA : GTAGGTGAAGCTAACAACAACAAG : ATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGT : TTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAG : GAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGCTCAAGCCTATG : GATGAGTCACAGGATTTCTACAAAAAACAGCAGTTGCGTGAACTTGCAATGCTGAATGGTACTCTTCGTGAAGAAGGTTCTCAAATGTCTGGTTCTGTTTCCCCCTTCCACAACAGTCTTAGTCTTGGGATGAAGAGGGCTAAAACCAGAGTGTGATCTTTGTGTAGTGGGATTTGGAGCTTGTGCATTGATACACACCACTAACCAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCACTGCCATCGGGGCACTGGTGCTGTTCTGTGCCAGTTCTAACTTGTCTCTATAATGATATGAAGTGTGTTTATGTTCCGGTCAGGGAAGATTTAGTAACAGTAAAGCCATAGTTGTGGACCGCTTAGAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTACCAACGTCATTGTATTATTCCATTAATTTCTAGTTTGTGATTTGAAGGTGTGGGAATGACTGTAATGCGAGCGAGGCGTGTCTGTACTGATAAAAAAAGAAAGAAAAA</gDNA_template>
            <first_frame> F  G  K  *  K  V  G  E  S  G  S  H  R  I  L  S  P  P  V  K  M  S  S  G  R  Y  M  A  Y  S  P  S  P  S  A  P  Q  S  P  H  I  A  G  L  R  S  A  S  S  A  I  A  E  Q  E  K :   Y  L  S  E  L  L  A  E  R  H  K  L  G  P  F  V  P  V  L  P  H  C  Y  R  L  L  N  Q   : E  L  L  R  V  T  T  L  L  G  N  A  S  V  L  D  Q  N  G  L  E  H  A  S  P  L  A  S  G  G  M  F  S  N  G  G  A  N  V  D  R  W  A  S  P  F  Q  S  E  :  V  G  E  A  N  N  N  K  :  I  S  G  L  M  H  S  P  S  T  Q  N  W  L  N  T  Q  S  N  S  S  G  L  I  V  K  R  T  L  R  I  D  I  P  V  D  Q  Y  P  S  :  L  P  L  Q  Y  N  F  V  G  R  L  L  G  P  R  G  N  S  L  K  R  V  E  A  T  T  E  C  R  V  L  I  R  G  R  G  S  I  K  D  P  V  K  :  E  E  M  M  R  G  K  P  G  Y  E  H  L  N  E  P  L  H  V  I  V  E  A  E  L  P  V  E  I  I  D  A  R  L  L  Q  A  R  E  I  L  E  D  L  L  K  P  M  :  D  E  S  Q  D  F  Y  K  K  Q  Q  L  R  E  L  A  M  L  N  G  T  L  R  E  E  G  S  Q  M  S  G  S  V  S  P  F  H  N  S  L  S  L  G  M  K  R  A  K  T  R  V  *  S  L  C  S  G  I  W  S  L  C  I  D  T  H  H  *  P  T  S  R  S  Y  M  Q  P  M  L  L  *  R  L  M  P  R  T  A  I  G  A  L  V  L  F  C  A  S  S  N  L  S  L  *  *  Y  E  V  C  L  C  S  G  Q  G  R  F  S  N  S  K  A  I  V  V  D  R  L  E  V  C  L  M  S  S  E  R  C  L  T  N  V  I  V  L  F  H  *  F  L  V  C  D  L  K  V  W  E  *  L  *  C  E  R  G  V  S  V  L  I  K  K  E  R  K  </first_frame>
            <second_frame>  L  E  S  E  K  *  V  N  L  A  V  I  G  F  C  R  R  R  *  R  C  L  P  E  D  T  W  P  T  H  H  L  R  L  L  L  S  L  L  I  S  P  D  F  A  L  L  P  L  P  S  P  S  K  R   : S  I  S  Q  S  Y  L  Q  N  A  T  N  S  A  H  L  C  P  S  F  L  I  A  I  D  C  *  I  R  :  N  F  C  V  *  L  H  C  W  G  M  H  Q  C  *  I  K  M  G  L  N  M  L  A  P  W  L  Q  E  E  C  F  Q  M  E  E  L  M  W  T  D  G  H  H  H  F  N  Q  K :   *  V  K  L  T  T  T  R :   Y  Q  V  *  C  T  P  R  R  L  R  T  G  L  I  L  K  V  T  H  Q  A  S  *  *  S  E  H  S  E  L  I  Y  R  W  I  N  I  L  V :   Y  L  C  S  T  I  S  W  A  D  F  W  A  L  E  G  T  L  *  S  G  W  K  L  L  L  N  A  G  F  *  *  E  D  A  E  A  S  K  I  Q  *  R :   K  K  *  *  E  A  N  R  D  M  S  T  *  M  S  L  F  M  L  L  W  K  L  N  C  Q  W  R  S  L  M  P  G  Y  C  K  H  V  R  Y  W  K  I  C  S  S  L  W :   M  S  H  R  I  S  T  K  N  S  S  C  V  N  L  Q  C  *  M  V  L  F  V  K  K  V  L  K  C  L  V  L  F  P  P  S  T  T  V  L  V  L  G  *  R  G  L  K  P  E  C  D  L  C  V  V  G  F  G  A  C  A  L  I  H  T  T  N  Q  P  A  G  P  I  C  N  R  C  C  Y  N  V  L  C  L  A  L  P  S  G  H  W  C  C  S  V  P  V  L  T  C  L  Y  N  D  M  K  C  V  Y  V  P  V  R  E  D  L  V  T  V  K  P  *  L  W  T  A  *  R  F  A  *  C  R  Q  S  G  V  L  P  T  S  L  Y  Y  S  I  N  F  *  F  V  I  *  R  C  G  N  D  C  N  A  S  E  A  C  L  Y  *  *  K  K  K  E  K </second_frame>
            <third_frame>   W  K  V  K  S  R  *  I  W  Q  S  S  D  S  V  A  A  G  E  D  V  F  R  K  I  H  G  L  L  T  I  S  V  C  S  S  V  S  S  Y  R  R  T  S  L  C  F  L  C  H  R  R  A  R  E  :  V  S  L  R  V  T  C  R  T  P  Q  T  R  P  I  C  A  R  P  S  S  L  L  S  I  A  E  S  G :   T  F  A  C  N  Y  T  V  G  E  C  I  S  V  R  S  K  W  A  *  T  C  *  P  P  G  F  R  R  N  V  F  K  W  R  S  *  C  G  Q  M  G  I  T  I  S  I  R   : S  R  *  S  *  Q  Q  Q   : D  I  R  F  N  A  L  P  V  D  S  E  L  A  *  Y  S  K  *  L  I  R  P  H  S  E  A  N  T  Q  N  *  Y  T  G  G  S  I  S  *   : F  T  F  A  V  Q  F  R  G  P  T  S  G  P  *  R  E  L  S  K  A  G  G  S  Y  Y  *  M  P  G  S  D  K  R  T  R  K  H  Q  R  S  S  K   : G  R  N  D  E  R  Q  T  G  I  *  A  P  E  *  A  S  S  C  Y  C  G  S  *  T  A  S  G  D  H  *  C  P  A  I  A  S  T  *  D  I  G  R  S  A  Q  A  Y   : G  *  V  T  G  F  L  Q  K  T  A  V  A  *  T  C  N  A  E  W  Y  S  S  *  R  R  F  S  N  V  W  F  C  F  P  L  P  Q  Q  S  *  S  W  D  E  E  G  *  N  Q  S  V  I  F  V  *  W  D  L  E  L  V  H  *  Y  T  P  L  T  N  Q  Q  V  L  Y  A  T  D  V  A  I  T  S  Y  A  S  H  C  H  R  G  T  G  A  V  L  C  Q  F  *  L  V  S  I  M  I  *  S  V  F  M  F  R  S  G  K  I  *  *  Q  *  S  H  S  C  G  P  L  R  G  L  L  D  V  V  R  A  V  S  Y  Q  R  H  C  I  I  P  L  I  S  S  L  *  F  E  G  V  G  M  T  V  M  R  A  R  R  V  C  T  D  K  K  R  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129114" stop="128960"/>
                    <exon start="127563" stop="127478"/>
                    <exon start="125562" stop="125417"/>
                    <exon start="125271" stop="125248"/>
                    <exon start="124575" stop="124456"/>
                    <exon start="124383" stop="124255"/>
                    <exon start="123495" stop="123352"/>
                    <exon start="123240" stop="123085"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>957</number_coding_nucleotides>
                  <number_encoded_amino_acids>319</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVGESGSHRILSPPVKMSSGRYMAYSPSPSAPQSPHIAGLRSASSAIAEQEKYLSELLAERHKLGPFVPVLPHCYRLLNQELLRVTTLLGNASVLDQNGLEHASPLASGGMFSNGGANVDRWASPFQSEVGEANNNKISGLMHSPSTQNWLNTQSNSSGLIVKRTLRIDIPVDQYPSLPLQYNFVGRLLGPRGNSLKRVEATTECRVLIRGRGSIKDPVKEEMMRGKPGYEHLNEPLHVIVEAELPVEIIDARLLQAREILEDLLKPMDESQDFYKKQQLRELAMLNGTLREEGSQMSGSVSPFHNSLSLGMKRAKTRV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123107" stop="122871"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGLKPECDLCVVGFGACALIHTTNQPAGPICNRCCYNVLCLALPSGHWCCSVPVLTCLYNDMKCVYVPVREDLVTVKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="129143" e_stop="128960"/>
            <exon e_start="127563" e_stop="127478"/>
            <exon e_start="125562" e_stop="125417"/>
            <exon e_start="124575" e_stop="124456"/>
            <exon e_start="124383" e_stop="124255"/>
            <exon e_start="123495" e_stop="123352"/>
            <exon e_start="123240" e_stop="122715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.759" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="129143" e_stop="128960" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128959" i_stop="127564" i_length="1396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127563" e_stop="127478" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.759">
            <gDNA_intron_boundary i_start="127477" i_stop="125563" i_length="1915"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="125562" e_stop="125417" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.783">
            <gDNA_intron_boundary i_start="125416" i_stop="124576" i_length="841"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="124575" e_stop="124456" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.990">
            <gDNA_intron_boundary i_start="124455" i_stop="124384" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="124383" e_stop="124255" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="124254" i_stop="123496" i_length="759"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123495" e_stop="123352" e_length="144"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="123351" i_stop="123241" i_length="111"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="123240" e_stop="122715" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129143" stop="128960"/>
              <exon start="127563" stop="127478"/>
              <exon start="125562" stop="125417"/>
              <exon start="124575" stop="124456"/>
              <exon start="124383" stop="124255"/>
              <exon start="123495" stop="123352"/>
              <exon start="123240" stop="123189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129091" stop="128960"/>
              <exon start="127563" stop="127478"/>
              <exon start="125562" stop="125487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124560" stop="124456"/>
              <exon start="124383" stop="124255"/>
              <exon start="123495" stop="123352"/>
              <exon start="123240" stop="122981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124503" stop="124456"/>
              <exon start="124383" stop="124255"/>
              <exon start="123495" stop="123352"/>
              <exon start="123240" stop="122790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123426" stop="123352"/>
              <exon start="123240" stop="122715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123089" stop="122715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122971" stop="122743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAGAGGGACTCCTTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA : GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG : AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAA : ATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGT : TTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAG : GAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGCTCAAGCCTATG : GATGAGTCACAGGATTTCTACAAAAAACAGCAGTTGCGTGAACTTGCAATGCTGAATGGTACTCTTCGTGAAGAAGGTTCTCAAATGTCTGGTTCTGTTTCCCCCTTCCACAACAGTCTTAGTCTTGGGATGAAGAGGGCTAAAACCAGAGTGTGATCTTTGTGTAGTGGGATTTGGAGCTTGTGCATTGATACACACCACTAACCAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCACTGCCATCGGGGCACTGGTGCTGTTCTGTGCCAGTTCTAACTTGTCTCTATAATGATATGAAGTGTGTTTATGTTCCGGTCAGGGAAGATTTAGTAACAGTAAAGCCATAGTTGTGGACCGCTTAGAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTACCAACGTCATTGTATTATTCCATTAATTTCTAGTTTGTGATTTGAAGGTGTGGGAATGACTGTAATGCGAGCGAGGCGTGTCTGTACTGATAAAAAAAGAAAGAAAAA</gDNA_template>
            <first_frame> K  Q  R  D  S  F  L  E  S  E  K  *  V  N  L  A  V  I  G  F  C  R  R  R  *  R  C  L  P  E  D  T  W  P  T  H  H  L  R  L  L  L  S  L  L  I  S  P  D  F  A  L  L  P  L  P  S  P  S  K  R   : S  I  S  Q  S  Y  L  Q  N  A  T  N  S  A  H  L  C  P  S  F  L  I  A  I  D  C  *  I  R  :  N  F  C  V  *  L  H  C  W  G  M  H  Q  C  *  I  K  M  G  L  N  M  L  A  P  W  L  Q  E  E  C  F  Q  M  E  E  L  M  W  T  D  G  H  H  H  F  N  Q  K :   Y  Q  V  *  C  T  P  R  R  L  R  T  G  L  I  L  K  V  T  H  Q  A  S  *  *  S  E  H  S  E  L  I  Y  R  W  I  N  I  L  V :   Y  L  C  S  T  I  S  W  A  D  F  W  A  L  E  G  T  L  *  S  G  W  K  L  L  L  N  A  G  F  *  *  E  D  A  E  A  S  K  I  Q  *  R :   K  K  *  *  E  A  N  R  D  M  S  T  *  M  S  L  F  M  L  L  W  K  L  N  C  Q  W  R  S  L  M  P  G  Y  C  K  H  V  R  Y  W  K  I  C  S  S  L  W :   M  S  H  R  I  S  T  K  N  S  S  C  V  N  L  Q  C  *  M  V  L  F  V  K  K  V  L  K  C  L  V  L  F  P  P  S  T  T  V  L  V  L  G  *  R  G  L  K  P  E  C  D  L  C  V  V  G  F  G  A  C  A  L  I  H  T  T  N  Q  P  A  G  P  I  C  N  R  C  C  Y  N  V  L  C  L  A  L  P  S  G  H  W  C  C  S  V  P  V  L  T  C  L  Y  N  D  M  K  C  V  Y  V  P  V  R  E  D  L  V  T  V  K  P  *  L  W  T  A  *  R  F  A  *  C  R  Q  S  G  V  L  P  T  S  L  Y  Y  S  I  N  F  *  F  V  I  *  R  C  G  N  D  C  N  A  S  E  A  C  L  Y  *  *  K  K  K  E  K </first_frame>
            <second_frame>  N  R  G  T  P  F  W  K  V  K  S  R  *  I  W  Q  S  S  D  S  V  A  A  G  E  D  V  F  R  K  I  H  G  L  L  T  I  S  V  C  S  S  V  S  S  Y  R  R  T  S  L  C  F  L  C  H  R  R  A  R  E  :  V  S  L  R  V  T  C  R  T  P  Q  T  R  P  I  C  A  R  P  S  S  L  L  S  I  A  E  S  G :   T  F  A  C  N  Y  T  V  G  E  C  I  S  V  R  S  K  W  A  *  T  C  *  P  P  G  F  R  R  N  V  F  K  W  R  S  *  C  G  Q  M  G  I  T  I  S  I  R   : N  I  R  F  N  A  L  P  V  D  S  E  L  A  *  Y  S  K  *  L  I  R  P  H  S  E  A  N  T  Q  N  *  Y  T  G  G  S  I  S  *   : F  T  F  A  V  Q  F  R  G  P  T  S  G  P  *  R  E  L  S  K  A  G  G  S  Y  Y  *  M  P  G  S  D  K  R  T  R  K  H  Q  R  S  S  K   : G  R  N  D  E  R  Q  T  G  I  *  A  P  E  *  A  S  S  C  Y  C  G  S  *  T  A  S  G  D  H  *  C  P  A  I  A  S  T  *  D  I  G  R  S  A  Q  A  Y   : G  *  V  T  G  F  L  Q  K  T  A  V  A  *  T  C  N  A  E  W  Y  S  S  *  R  R  F  S  N  V  W  F  C  F  P  L  P  Q  Q  S  *  S  W  D  E  E  G  *  N  Q  S  V  I  F  V  *  W  D  L  E  L  V  H  *  Y  T  P  L  T  N  Q  Q  V  L  Y  A  T  D  V  A  I  T  S  Y  A  S  H  C  H  R  G  T  G  A  V  L  C  Q  F  *  L  V  S  I  M  I  *  S  V  F  M  F  R  S  G  K  I  *  *  Q  *  S  H  S  C  G  P  L  R  G  L  L  D  V  V  R  A  V  S  Y  Q  R  H  C  I  I  P  L  I  S  S  L  *  F  E  G  V  G  M  T  V  M  R  A  R  R  V  C  T  D  K  K  R  K  K   </second_frame>
            <third_frame>   T  E  G  L  L  F  G  K  *  K  V  G  E  S  G  S  H  R  I  L  S  P  P  V  K  M  S  S  G  R  Y  M  A  Y  S  P  S  P  S  A  P  Q  S  P  H  I  A  G  L  R  S  A  S  S  A  I  A  E  Q  E  K :   Y  L  S  E  L  L  A  E  R  H  K  L  G  P  F  V  P  V  L  P  H  C  Y  R  L  L  N  Q   : E  L  L  R  V  T  T  L  L  G  N  A  S  V  L  D  Q  N  G  L  E  H  A  S  P  L  A  S  G  G  M  F  S  N  G  G  A  N  V  D  R  W  A  S  P  F  Q  S  E  :  I  S  G  L  M  H  S  P  S  T  Q  N  W  L  N  T  Q  S  N  S  S  G  L  I  V  K  R  T  L  R  I  D  I  P  V  D  Q  Y  P  S  :  L  P  L  Q  Y  N  F  V  G  R  L  L  G  P  R  G  N  S  L  K  R  V  E  A  T  T  E  C  R  V  L  I  R  G  R  G  S  I  K  D  P  V  K  :  E  E  M  M  R  G  K  P  G  Y  E  H  L  N  E  P  L  H  V  I  V  E  A  E  L  P  V  E  I  I  D  A  R  L  L  Q  A  R  E  I  L  E  D  L  L  K  P  M  :  D  E  S  Q  D  F  Y  K  K  Q  Q  L  R  E  L  A  M  L  N  G  T  L  R  E  E  G  S  Q  M  S  G  S  V  S  P  F  H  N  S  L  S  L  G  M  K  R  A  K  T  R  V  *  S  L  C  S  G  I  W  S  L  C  I  D  T  H  H  *  P  T  S  R  S  Y  M  Q  P  M  L  L  *  R  L  M  P  R  T  A  I  G  A  L  V  L  F  C  A  S  S  N  L  S  L  *  *  Y  E  V  C  L  C  S  G  Q  G  R  F  S  N  S  K  A  I  V  V  D  R  L  E  V  C  L  M  S  S  E  R  C  L  T  N  V  I  V  L  F  H  *  F  L  V  C  D  L  K  V  W  E  *  L  *  C  E  R  G  V  S  V  L  I  K  K  E  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129114" stop="128960"/>
                    <exon start="127563" stop="127478"/>
                    <exon start="125562" stop="125417"/>
                    <exon start="124575" stop="124456"/>
                    <exon start="124383" stop="124255"/>
                    <exon start="123495" stop="123352"/>
                    <exon start="123240" stop="123085"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVGESGSHRILSPPVKMSSGRYMAYSPSPSAPQSPHIAGLRSASSAIAEQEKYLSELLAERHKLGPFVPVLPHCYRLLNQELLRVTTLLGNASVLDQNGLEHASPLASGGMFSNGGANVDRWASPFQSEISGLMHSPSTQNWLNTQSNSSGLIVKRTLRIDIPVDQYPSLPLQYNFVGRLLGPRGNSLKRVEATTECRVLIRGRGSIKDPVKEEMMRGKPGYEHLNEPLHVIVEAELPVEIIDARLLQAREILEDLLKPMDESQDFYKKQQLRELAMLNGTLREEGSQMSGSVSPFHNSLSLGMKRAKTRV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123107" stop="122871"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGLKPECDLCVVGFGACALIHTTNQPAGPICNRCCYNVLCLALPSGHWCCSVPVLTCLYNDMKCVYVPVREDLVTVKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="129113" e_stop="128960"/>
            <exon e_start="127563" e_stop="127478"/>
            <exon e_start="124575" e_stop="124456"/>
            <exon e_start="124383" e_stop="124255"/>
            <exon e_start="123495" e_stop="123352"/>
            <exon e_start="123240" e_stop="122715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.926" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="129113" e_stop="128960" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128959" i_stop="127564" i_length="1396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127563" e_stop="127478" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.783">
            <gDNA_intron_boundary i_start="127477" i_stop="124576" i_length="2902"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124575" e_stop="124456" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.990">
            <gDNA_intron_boundary i_start="124455" i_stop="124384" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="124383" e_stop="124255" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="124254" i_stop="123496" i_length="759"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123495" e_stop="123352" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="123351" i_stop="123241" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="123240" e_stop="122715" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129113" stop="128960"/>
              <exon start="127563" stop="127478"/>
              <exon start="124575" stop="124456"/>
              <exon start="124383" stop="124255"/>
              <exon start="123495" stop="123448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124560" stop="124456"/>
              <exon start="124383" stop="124255"/>
              <exon start="123495" stop="123352"/>
              <exon start="123240" stop="122981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124503" stop="124456"/>
              <exon start="124383" stop="124255"/>
              <exon start="123495" stop="123352"/>
              <exon start="123240" stop="122790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123426" stop="123352"/>
              <exon start="123240" stop="122715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123089" stop="122715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122971" stop="122743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA : GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG : ATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGT : TTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAG : GAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGCTCAAGCCTATG : GATGAGTCACAGGATTTCTACAAAAAACAGCAGTTGCGTGAACTTGCAATGCTGAATGGTACTCTTCGTGAAGAAGGTTCTCAAATGTCTGGTTCTGTTTCCCCCTTCCACAACAGTCTTAGTCTTGGGATGAAGAGGGCTAAAACCAGAGTGTGATCTTTGTGTAGTGGGATTTGGAGCTTGTGCATTGATACACACCACTAACCAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCACTGCCATCGGGGCACTGGTGCTGTTCTGTGCCAGTTCTAACTTGTCTCTATAATGATATGAAGTGTGTTTATGTTCCGGTCAGGGAAGATTTAGTAACAGTAAAGCCATAGTTGTGGACCGCTTAGAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTACCAACGTCATTGTATTATTCCATTAATTTCTAGTTTGTGATTTGAAGGTGTGGGAATGACTGTAATGCGAGCGAGGCGTGTCTGTACTGATAAAAAAAGAAAGAAAAA</gDNA_template>
            <first_frame> K  *  V  N  L  A  V  I  G  F  C  R  R  R  *  R  C  L  P  E  D  T  W  P  T  H  H  L  R  L  L  L  S  L  L  I  S  P  D  F  A  L  L  P  L  P  S  P  S  K  R   : S  I  S  Q  S  Y  L  Q  N  A  T  N  S  A  H  L  C  P  S  F  L  I  A  I  D  C  *  I  R  :  I  S  G  L  M  H  S  P  S  T  Q  N  W  L  N  T  Q  S  N  S  S  G  L  I  V  K  R  T  L  R  I  D  I  P  V  D  Q  Y  P  S  :  L  P  L  Q  Y  N  F  V  G  R  L  L  G  P  R  G  N  S  L  K  R  V  E  A  T  T  E  C  R  V  L  I  R  G  R  G  S  I  K  D  P  V  K  :  E  E  M  M  R  G  K  P  G  Y  E  H  L  N  E  P  L  H  V  I  V  E  A  E  L  P  V  E  I  I  D  A  R  L  L  Q  A  R  E  I  L  E  D  L  L  K  P  M  :  D  E  S  Q  D  F  Y  K  K  Q  Q  L  R  E  L  A  M  L  N  G  T  L  R  E  E  G  S  Q  M  S  G  S  V  S  P  F  H  N  S  L  S  L  G  M  K  R  A  K  T  R  V  *  S  L  C  S  G  I  W  S  L  C  I  D  T  H  H  *  P  T  S  R  S  Y  M  Q  P  M  L  L  *  R  L  M  P  R  T  A  I  G  A  L  V  L  F  C  A  S  S  N  L  S  L  *  *  Y  E  V  C  L  C  S  G  Q  G  R  F  S  N  S  K  A  I  V  V  D  R  L  E  V  C  L  M  S  S  E  R  C  L  T  N  V  I  V  L  F  H  *  F  L  V  C  D  L  K  V  W  E  *  L  *  C  E  R  G  V  S  V  L  I  K  K  E  R  K  </first_frame>
            <second_frame>  S  R  *  I  W  Q  S  S  D  S  V  A  A  G  E  D  V  F  R  K  I  H  G  L  L  T  I  S  V  C  S  S  V  S  S  Y  R  R  T  S  L  C  F  L  C  H  R  R  A  R  E  :  V  S  L  R  V  T  C  R  T  P  Q  T  R  P  I  C  A  R  P  S  S  L  L  S  I  A  E  S  G :   Y  Q  V  *  C  T  P  R  R  L  R  T  G  L  I  L  K  V  T  H  Q  A  S  *  *  S  E  H  S  E  L  I  Y  R  W  I  N  I  L  V :   Y  L  C  S  T  I  S  W  A  D  F  W  A  L  E  G  T  L  *  S  G  W  K  L  L  L  N  A  G  F  *  *  E  D  A  E  A  S  K  I  Q  *  R :   K  K  *  *  E  A  N  R  D  M  S  T  *  M  S  L  F  M  L  L  W  K  L  N  C  Q  W  R  S  L  M  P  G  Y  C  K  H  V  R  Y  W  K  I  C  S  S  L  W :   M  S  H  R  I  S  T  K  N  S  S  C  V  N  L  Q  C  *  M  V  L  F  V  K  K  V  L  K  C  L  V  L  F  P  P  S  T  T  V  L  V  L  G  *  R  G  L  K  P  E  C  D  L  C  V  V  G  F  G  A  C  A  L  I  H  T  T  N  Q  P  A  G  P  I  C  N  R  C  C  Y  N  V  L  C  L  A  L  P  S  G  H  W  C  C  S  V  P  V  L  T  C  L  Y  N  D  M  K  C  V  Y  V  P  V  R  E  D  L  V  T  V  K  P  *  L  W  T  A  *  R  F  A  *  C  R  Q  S  G  V  L  P  T  S  L  Y  Y  S  I  N  F  *  F  V  I  *  R  C  G  N  D  C  N  A  S  E  A  C  L  Y  *  *  K  K  K  E  K </second_frame>
            <third_frame>   V  G  E  S  G  S  H  R  I  L  S  P  P  V  K  M  S  S  G  R  Y  M  A  Y  S  P  S  P  S  A  P  Q  S  P  H  I  A  G  L  R  S  A  S  S  A  I  A  E  Q  E  K :   Y  L  S  E  L  L  A  E  R  H  K  L  G  P  F  V  P  V  L  P  H  C  Y  R  L  L  N  Q   : D  I  R  F  N  A  L  P  V  D  S  E  L  A  *  Y  S  K  *  L  I  R  P  H  S  E  A  N  T  Q  N  *  Y  T  G  G  S  I  S  *   : F  T  F  A  V  Q  F  R  G  P  T  S  G  P  *  R  E  L  S  K  A  G  G  S  Y  Y  *  M  P  G  S  D  K  R  T  R  K  H  Q  R  S  S  K   : G  R  N  D  E  R  Q  T  G  I  *  A  P  E  *  A  S  S  C  Y  C  G  S  *  T  A  S  G  D  H  *  C  P  A  I  A  S  T  *  D  I  G  R  S  A  Q  A  Y   : G  *  V  T  G  F  L  Q  K  T  A  V  A  *  T  C  N  A  E  W  Y  S  S  *  R  R  F  S  N  V  W  F  C  F  P  L  P  Q  Q  S  *  S  W  D  E  E  G  *  N  Q  S  V  I  F  V  *  W  D  L  E  L  V  H  *  Y  T  P  L  T  N  Q  Q  V  L  Y  A  T  D  V  A  I  T  S  Y  A  S  H  C  H  R  G  T  G  A  V  L  C  Q  F  *  L  V  S  I  M  I  *  S  V  F  M  F  R  S  G  K  I  *  *  Q  *  S  H  S  C  G  P  L  R  G  L  L  D  V  V  R  A  V  S  Y  Q  R  H  C  I  I  P  L  I  S  S  L  *  F  E  G  V  G  M  T  V  M  R  A  R  R  V  C  T  D  K  K  R  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127483" stop="127478"/>
                    <exon start="124575" stop="124456"/>
                    <exon start="124383" stop="124255"/>
                    <exon start="123495" stop="123352"/>
                    <exon start="123240" stop="123085"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRISGLMHSPSTQNWLNTQSNSSGLIVKRTLRIDIPVDQYPSLPLQYNFVGRLLGPRGNSLKRVEATTECRVLIRGRGSIKDPVKEEMMRGKPGYEHLNEPLHVIVEAELPVEIIDARLLQAREILEDLLKPMDESQDFYKKQQLRELAMLNGTLREEGSQMSGSVSPFHNSLSLGMKRAKTRV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129103" stop="128960"/>
                    <exon start="127563" stop="127478"/>
                    <exon start="124575" stop="124563"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWQSSDSVAAGEDVFRKIHGLLTISVCSSVSSYRRTSLCFLCHRRAREVSLRVTCRTPQTRPICARPSSLLSIAESGYQV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123107" stop="122871"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGLKPECDLCVVGFGACALIHTTNQPAGPICNRCCYNVLCLALPSGHWCCSVPVLTCLYNDMKCVYVPVREDLVTVKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="129165" e_stop="128960"/>
            <exon e_start="127563" e_stop="127478"/>
            <exon e_start="125562" e_stop="125417"/>
            <exon e_start="124575" e_stop="124456"/>
            <exon e_start="124371" e_stop="124255"/>
            <exon e_start="123495" e_stop="123352"/>
            <exon e_start="123240" e_stop="122715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.981"/>
          <exon-intron don_prob="0.926" acc_prob="0.759" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="129165" e_stop="128960" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128959" i_stop="127564" i_length="1396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127563" e_stop="127478" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.759">
            <gDNA_intron_boundary i_start="127477" i_stop="125563" i_length="1915"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="125562" e_stop="125417" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.783">
            <gDNA_intron_boundary i_start="125416" i_stop="124576" i_length="841"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="124575" e_stop="124456" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.997">
            <gDNA_intron_boundary i_start="124455" i_stop="124372" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="124371" e_stop="124255" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="124254" i_stop="123496" i_length="759"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123495" e_stop="123352" e_length="144"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="123351" i_stop="123241" i_length="111"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="123240" e_stop="122715" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129165" stop="128960"/>
              <exon start="127563" stop="127478"/>
              <exon start="125562" stop="125417"/>
              <exon start="124575" stop="124456"/>
              <exon start="124371" stop="124255"/>
              <exon start="123495" stop="123363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129128" stop="128960"/>
              <exon start="127563" stop="127478"/>
              <exon start="125562" stop="125417"/>
              <exon start="124575" stop="124456"/>
              <exon start="124371" stop="124301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129091" stop="128960"/>
              <exon start="127563" stop="127478"/>
              <exon start="125562" stop="125487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123426" stop="123352"/>
              <exon start="123240" stop="122715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123089" stop="122715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122971" stop="122743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCATTGCCAGTCCAAAAGAAGAAACAGAGGGACTCCTTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA : GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG : AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAA : ATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGT : TACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAG : GAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGCTCAAGCCTATG : GATGAGTCACAGGATTTCTACAAAAAACAGCAGTTGCGTGAACTTGCAATGCTGAATGGTACTCTTCGTGAAGAAGGTTCTCAAATGTCTGGTTCTGTTTCCCCCTTCCACAACAGTCTTAGTCTTGGGATGAAGAGGGCTAAAACCAGAGTGTGATCTTTGTGTAGTGGGATTTGGAGCTTGTGCATTGATACACACCACTAACCAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCACTGCCATCGGGGCACTGGTGCTGTTCTGTGCCAGTTCTAACTTGTCTCTATAATGATATGAAGTGTGTTTATGTTCCGGTCAGGGAAGATTTAGTAACAGTAAAGCCATAGTTGTGGACCGCTTAGAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTACCAACGTCATTGTATTATTCCATTAATTTCTAGTTTGTGATTTGAAGGTGTGGGAATGACTGTAATGCGAGCGAGGCGTGTCTGTACTGATAAAAAAAGAAAGAAAAA</gDNA_template>
            <first_frame> V  I  A  S  P  K  E  E  T  E  G  L  L  F  G  K  *  K  V  G  E  S  G  S  H  R  I  L  S  P  P  V  K  M  S  S  G  R  Y  M  A  Y  S  P  S  P  S  A  P  Q  S  P  H  I  A  G  L  R  S  A  S  S  A  I  A  E  Q  E  K :   Y  L  S  E  L  L  A  E  R  H  K  L  G  P  F  V  P  V  L  P  H  C  Y  R  L  L  N  Q   : E  L  L  R  V  T  T  L  L  G  N  A  S  V  L  D  Q  N  G  L  E  H  A  S  P  L  A  S  G  G  M  F  S  N  G  G  A  N  V  D  R  W  A  S  P  F  Q  S  E  :  I  S  G  L  M  H  S  P  S  T  Q  N  W  L  N  T  Q  S  N  S  S  G  L  I  V  K  R  T  L  R  I  D  I  P  V  D  Q  Y  P  S  :  Y  N  F  V  G  R  L  L  G  P  R  G  N  S  L  K  R  V  E  A  T  T  E  C  R  V  L  I  R  G  R  G  S  I  K  D  P  V  K  :  E  E  M  M  R  G  K  P  G  Y  E  H  L  N  E  P  L  H  V  I  V  E  A  E  L  P  V  E  I  I  D  A  R  L  L  Q  A  R  E  I  L  E  D  L  L  K  P  M  :  D  E  S  Q  D  F  Y  K  K  Q  Q  L  R  E  L  A  M  L  N  G  T  L  R  E  E  G  S  Q  M  S  G  S  V  S  P  F  H  N  S  L  S  L  G  M  K  R  A  K  T  R  V  *  S  L  C  S  G  I  W  S  L  C  I  D  T  H  H  *  P  T  S  R  S  Y  M  Q  P  M  L  L  *  R  L  M  P  R  T  A  I  G  A  L  V  L  F  C  A  S  S  N  L  S  L  *  *  Y  E  V  C  L  C  S  G  Q  G  R  F  S  N  S  K  A  I  V  V  D  R  L  E  V  C  L  M  S  S  E  R  C  L  T  N  V  I  V  L  F  H  *  F  L  V  C  D  L  K  V  W  E  *  L  *  C  E  R  G  V  S  V  L  I  K  K  E  R  K  </first_frame>
            <second_frame>  S  L  P  V  Q  K  K  K  Q  R  D  S  F  L  E  S  E  K  *  V  N  L  A  V  I  G  F  C  R  R  R  *  R  C  L  P  E  D  T  W  P  T  H  H  L  R  L  L  L  S  L  L  I  S  P  D  F  A  L  L  P  L  P  S  P  S  K  R   : S  I  S  Q  S  Y  L  Q  N  A  T  N  S  A  H  L  C  P  S  F  L  I  A  I  D  C  *  I  R  :  N  F  C  V  *  L  H  C  W  G  M  H  Q  C  *  I  K  M  G  L  N  M  L  A  P  W  L  Q  E  E  C  F  Q  M  E  E  L  M  W  T  D  G  H  H  H  F  N  Q  K :   Y  Q  V  *  C  T  P  R  R  L  R  T  G  L  I  L  K  V  T  H  Q  A  S  *  *  S  E  H  S  E  L  I  Y  R  W  I  N  I  L  V :   T  I  S  W  A  D  F  W  A  L  E  G  T  L  *  S  G  W  K  L  L  L  N  A  G  F  *  *  E  D  A  E  A  S  K  I  Q  *  R :   K  K  *  *  E  A  N  R  D  M  S  T  *  M  S  L  F  M  L  L  W  K  L  N  C  Q  W  R  S  L  M  P  G  Y  C  K  H  V  R  Y  W  K  I  C  S  S  L  W :   M  S  H  R  I  S  T  K  N  S  S  C  V  N  L  Q  C  *  M  V  L  F  V  K  K  V  L  K  C  L  V  L  F  P  P  S  T  T  V  L  V  L  G  *  R  G  L  K  P  E  C  D  L  C  V  V  G  F  G  A  C  A  L  I  H  T  T  N  Q  P  A  G  P  I  C  N  R  C  C  Y  N  V  L  C  L  A  L  P  S  G  H  W  C  C  S  V  P  V  L  T  C  L  Y  N  D  M  K  C  V  Y  V  P  V  R  E  D  L  V  T  V  K  P  *  L  W  T  A  *  R  F  A  *  C  R  Q  S  G  V  L  P  T  S  L  Y  Y  S  I  N  F  *  F  V  I  *  R  C  G  N  D  C  N  A  S  E  A  C  L  Y  *  *  K  K  K  E  K </second_frame>
            <third_frame>   H  C  Q  S  K  R  R  N  R  G  T  P  F  W  K  V  K  S  R  *  I  W  Q  S  S  D  S  V  A  A  G  E  D  V  F  R  K  I  H  G  L  L  T  I  S  V  C  S  S  V  S  S  Y  R  R  T  S  L  C  F  L  C  H  R  R  A  R  E  :  V  S  L  R  V  T  C  R  T  P  Q  T  R  P  I  C  A  R  P  S  S  L  L  S  I  A  E  S  G :   T  F  A  C  N  Y  T  V  G  E  C  I  S  V  R  S  K  W  A  *  T  C  *  P  P  G  F  R  R  N  V  F  K  W  R  S  *  C  G  Q  M  G  I  T  I  S  I  R   : N  I  R  F  N  A  L  P  V  D  S  E  L  A  *  Y  S  K  *  L  I  R  P  H  S  E  A  N  T  Q  N  *  Y  T  G  G  S  I  S  *   : L  Q  F  R  G  P  T  S  G  P  *  R  E  L  S  K  A  G  G  S  Y  Y  *  M  P  G  S  D  K  R  T  R  K  H  Q  R  S  S  K   : G  R  N  D  E  R  Q  T  G  I  *  A  P  E  *  A  S  S  C  Y  C  G  S  *  T  A  S  G  D  H  *  C  P  A  I  A  S  T  *  D  I  G  R  S  A  Q  A  Y   : G  *  V  T  G  F  L  Q  K  T  A  V  A  *  T  C  N  A  E  W  Y  S  S  *  R  R  F  S  N  V  W  F  C  F  P  L  P  Q  Q  S  *  S  W  D  E  E  G  *  N  Q  S  V  I  F  V  *  W  D  L  E  L  V  H  *  Y  T  P  L  T  N  Q  Q  V  L  Y  A  T  D  V  A  I  T  S  Y  A  S  H  C  H  R  G  T  G  A  V  L  C  Q  F  *  L  V  S  I  M  I  *  S  V  F  M  F  R  S  G  K  I  *  *  Q  *  S  H  S  C  G  P  L  R  G  L  L  D  V  V  R  A  V  S  Y  Q  R  H  C  I  I  P  L  I  S  S  L  *  F  E  G  V  G  M  T  V  M  R  A  R  R  V  C  T  D  K  K  R  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129114" stop="128960"/>
                    <exon start="127563" stop="127478"/>
                    <exon start="125562" stop="125417"/>
                    <exon start="124575" stop="124456"/>
                    <exon start="124371" stop="124255"/>
                    <exon start="123495" stop="123352"/>
                    <exon start="123240" stop="123085"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVGESGSHRILSPPVKMSSGRYMAYSPSPSAPQSPHIAGLRSASSAIAEQEKYLSELLAERHKLGPFVPVLPHCYRLLNQELLRVTTLLGNASVLDQNGLEHASPLASGGMFSNGGANVDRWASPFQSEISGLMHSPSTQNWLNTQSNSSGLIVKRTLRIDIPVDQYPSYNFVGRLLGPRGNSLKRVEATTECRVLIRGRGSIKDPVKEEMMRGKPGYEHLNEPLHVIVEAELPVEIIDARLLQAREILEDLLKPMDESQDFYKKQQLRELAMLNGTLREEGSQMSGSVSPFHNSLSLGMKRAKTRV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123107" stop="122871"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGLKPECDLCVVGFGACALIHTTNQPAGPICNRCCYNVLCLALPSGHWCCSVPVLTCLYNDMKCVYVPVREDLVTVKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="129129" e_stop="128960"/>
            <exon e_start="127563" e_stop="127478"/>
            <exon e_start="125562" e_stop="125263"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.759" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="129129" e_stop="128960" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128959" i_stop="127564" i_length="1396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127563" e_stop="127478" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.759">
            <gDNA_intron_boundary i_start="127477" i_stop="125563" i_length="1915"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="125562" e_stop="125263" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129129" stop="128960"/>
              <exon start="127563" stop="127478"/>
              <exon start="125562" stop="125349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129128" stop="128960"/>
              <exon start="127563" stop="127478"/>
              <exon start="125562" stop="125263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129128" stop="128960"/>
              <exon start="127563" stop="127478"/>
              <exon start="125562" stop="125307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129091" stop="128960"/>
              <exon start="127563" stop="127478"/>
              <exon start="125562" stop="125487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337965" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA : GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG : AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGACAAAGGTTTCTAATTTCCATGCTAACTTGATTTCTTATTAAGTGTTTTAACTTCAATCTCCACTTGTCTCGTGACAGGTAGGTGAA</gDNA_template>
            <first_frame> L  F  G  K  *  K  V  G  E  S  G  S  H  R  I  L  S  P  P  V  K  M  S  S  G  R  Y  M  A  Y  S  P  S  P  S  A  P  Q  S  P  H  I  A  G  L  R  S  A  S  S  A  I  A  E  Q  E  K :   Y  L  S  E  L  L  A  E  R  H  K  L  G  P  F  V  P  V  L  P  H  C  Y  R  L  L  N  Q   : E  L  L  R  V  T  T  L  L  G  N  A  S  V  L  D  Q  N  G  L  E  H  A  S  P  L  A  S  G  G  M  F  S  N  G  G  A  N  V  D  R  W  A  S  P  F  Q  S  E  V  W  I  L  T  I  N  I  T  S  F  R  S  D  F  I  C  L  K  S  F  S  D  K  G  F  *  F  P  C  *  L  D  F  L  L  S  V  L  T  S  I  S  T  C  L  V  T  G  R  *  </first_frame>
            <second_frame>  F  L  E  S  E  K  *  V  N  L  A  V  I  G  F  C  R  R  R  *  R  C  L  P  E  D  T  W  P  T  H  H  L  R  L  L  L  S  L  L  I  S  P  D  F  A  L  L  P  L  P  S  P  S  K  R   : S  I  S  Q  S  Y  L  Q  N  A  T  N  S  A  H  L  C  P  S  F  L  I  A  I  D  C  *  I  R  :  N  F  C  V  *  L  H  C  W  G  M  H  Q  C  *  I  K  M  G  L  N  M  L  A  P  W  L  Q  E  E  C  F  Q  M  E  E  L  M  W  T  D  G  H  H  H  F  N  Q  K  Y  G  Y  *  L  L  T  *  P  L  L  D  L  I  L  Y  V  *  K  A  F  L  T  K  V  S  N  F  H  A  N  L  I  S  Y  *  V  F  *  L  Q  S  P  L  V  S  *  Q  V  G  E </second_frame>
            <third_frame>   F  W  K  V  K  S  R  *  I  W  Q  S  S  D  S  V  A  A  G  E  D  V  F  R  K  I  H  G  L  L  T  I  S  V  C  S  S  V  S  S  Y  R  R  T  S  L  C  F  L  C  H  R  R  A  R  E  :  V  S  L  R  V  T  C  R  T  P  Q  T  R  P  I  C  A  R  P  S  S  L  L  S  I  A  E  S  G :   T  F  A  C  N  Y  T  V  G  E  C  I  S  V  R  S  K  W  A  *  T  C  *  P  P  G  F  R  R  N  V  F  K  W  R  S  *  C  G  Q  M  G  I  T  I  S  I  R  S  M  D  T  N  Y  *  H  N  L  F  *  I  *  F  Y  M  F  E  K  L  F  *  Q  R  F  L  I  S  M  L  T  *  F  L  I  K  C  F  N  F  N  L  H  L  S  R  D  R  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129114" stop="128960"/>
                    <exon start="127563" stop="127478"/>
                    <exon start="125562" stop="125336"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVGESGSHRILSPPVKMSSGRYMAYSPSPSAPQSPHIAGLRSASSAIAEQEKYLSELLAERHKLGPFVPVLPHCYRLLNQELLRVTTLLGNASVLDQNGLEHASPLASGGMFSNGGANVDRWASPFQSEVWILTINITSFRSDFICLKSFSDKGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="126369" e_stop="125780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126369" e_stop="125780" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126369" stop="125780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126368" stop="125867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307865" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGT</gDNA_template>
            <first_frame> W  T  C  T  L  G  I  S  I  S  *  *  E  V  I  L  G  M  L  Y  S  S  C  K  C  V  W  Q  W  W  I  A  W  P  R  T  C  *  T  Y  K  E  I  L  F  F  S  Y  I  F  *  I  Y  L  G  N  G  G  G  Y  V  Q  R  Q  V  *  P  S  S  S  N  F  F  F  N  Y  D  Q  Q  P  R  R  V  L  T  F  M  R  F  F  L  L  L  S  A  *  I  L  L  S  F  N  *  V  R  P  S  P  P  S  S  V  W  L  S  S  S  G  L  L  L  I  K  R  C  C  S  *  L  L  S  S  I  T  P  N  H  L  N  G  R  V  S  Y  L  L  *  K  I  L  Y  I  P  *  Y  *  S  L  A  S  S  T  A  K  K  G  A  L  K  *  Q  N  *  C  P  S  N  C  T  V  A  S  *  I  F  C  P  M  L  P  I  S  T  V  P  R   </first_frame>
            <second_frame>  G  P  A  L  W  E  Y  L  Y  H  S  K  R  L  Y  W  A  C  Y  I  P  L  V  N  V  F  G  N  G  G  L  H  G  Q  G  H  V  R  P  I  R  K  F  F  S  F  H  I  S  S  K  Y  I  L  E  M  A  E  D  M  S  K  D  K  F  N  L  Q  A  V  I  F  F  L  I  M  T  N  N  L  G  E  S  *  H  L  *  D  F  F  Y  C  C  L  P  K  F  F  S  P  S  I  R  L  D  L  L  L  L  P  P  F  G  C  H  L  R  D  F  F  *  *  N  G  V  A  P  S  C  C  L  A  S  H  Q  T  T  *  M  A  G  F  L  I  C  Y  R  K  Y  C  I  Y  L  D  I  E  V  W  H  L  Q  L  Q  K  K  V  P  *  S  D  R  I  N  A  P  L  I  V  P  L  R  R  R  F  S  A  L  C  F  P  S  L  L  F  P  V  </second_frame>
            <third_frame>   D  L  H  S  G  N  I  Y  I  I  V  R  G  Y  T  G  H  V  I  F  L  L  *  M  C  L  A  M  V  D  C  M  A  K  D  M  L  D  L  *  G  N  S  F  L  F  I  Y  L  L  N  I  S  W  K  W  R  R  I  C  P  K  T  S  L  T  F  K  Q  *  F  F  F  *  L  *  P  T  T  *  E  S  P  N  I  Y  E  I  F  F  T  V  V  C  L  N  S  S  L  L  Q  L  G  *  T  F  S  S  F  L  R  L  V  V  I  F  G  T  S  F  N  K  T  V  L  L  L  V  A  V  *  H  H  T  K  P  L  K  W  Q  G  F  L  F  V  I  E  N  I  V  Y  T  L  I  L  K  F  G  I  F  N  C  K  K  R  C  L  K  V  T  E  L  M  P  L  *  L  Y  R  C  V  V  D  F  L  P  Y  A  S  H  L  Y  C  S  P  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126368" stop="126117"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPALWEYLYHSKRLYWACYIPLVNVFGNGGLHGQGHVRPIRKFFSFHISSKYILEMAEDMSKDKFNLQAVIFFLIMTNNLGES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="131632" PGL_stop="137282"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131632" e_stop="131707"/>
            <exon e_start="131849" e_stop="131944"/>
            <exon e_start="134099" e_stop="134228"/>
            <exon e_start="134803" e_stop="134894"/>
            <exon e_start="135166" e_stop="135234"/>
            <exon e_start="135925" e_stop="135982"/>
            <exon e_start="136089" e_stop="136188"/>
            <exon e_start="136504" e_stop="136590"/>
            <exon e_start="136685" e_stop="136763"/>
            <exon e_start="136898" e_stop="137030"/>
            <exon e_start="137099" e_stop="137282"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.137" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.826" e_score="1.000"/>
          <exon-intron don_prob="0.503" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.821"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131632" e_stop="131707" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.994">
            <gDNA_intron_boundary i_start="131708" i_stop="131848" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131849" e_stop="131944" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.945">
            <gDNA_intron_boundary i_start="131945" i_stop="134098" i_length="2154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="134099" e_stop="134228" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.918" acc_prob="0.995">
            <gDNA_intron_boundary i_start="134229" i_stop="134802" i_length="574"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="134803" e_stop="134894" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="134895" i_stop="135165" i_length="271"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="135166" e_stop="135234" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.137" acc_prob="0.822">
            <gDNA_intron_boundary i_start="135235" i_stop="135924" i_length="690"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="135925" e_stop="135982" e_length="58"/>
          </exon>
          <intron i_serial="6" don_prob="0.921" acc_prob="0.974">
            <gDNA_intron_boundary i_start="135983" i_stop="136088" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="136089" e_stop="136188" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="136189" i_stop="136503" i_length="315"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="136504" e_stop="136590" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.961" acc_prob="0.995">
            <gDNA_intron_boundary i_start="136591" i_stop="136684" i_length="94"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="136685" e_stop="136763" e_length="79"/>
          </exon>
          <intron i_serial="9" don_prob="0.979" acc_prob="0.826">
            <gDNA_intron_boundary i_start="136764" i_stop="136897" i_length="134"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="136898" e_stop="137030" e_length="133"/>
          </exon>
          <intron i_serial="10" don_prob="0.503" acc_prob="0.981">
            <gDNA_intron_boundary i_start="137031" i_stop="137098" i_length="68"/>
          </intron>
          <exon e_serial="11" e_score="0.821">
            <gDNA_exon_boundary e_start="137099" e_stop="137282" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131632" stop="131707"/>
              <exon start="131849" stop="131944"/>
              <exon start="134099" stop="134228"/>
              <exon start="134803" stop="134894"/>
              <exon start="135166" stop="135234"/>
              <exon start="135925" stop="135982"/>
              <exon start="136089" stop="136093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131640" stop="131707"/>
              <exon start="131849" stop="131944"/>
              <exon start="134099" stop="134228"/>
              <exon start="134803" stop="134894"/>
              <exon start="135166" stop="135198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131641" stop="131707"/>
              <exon start="131849" stop="131944"/>
              <exon start="134099" stop="134228"/>
              <exon start="134803" stop="134894"/>
              <exon start="135166" stop="135234"/>
              <exon start="135925" stop="135982"/>
              <exon start="136089" stop="136093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131648" stop="131707"/>
              <exon start="131849" stop="131944"/>
              <exon start="134099" stop="134228"/>
              <exon start="134803" stop="134894"/>
              <exon start="135166" stop="135202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134203" stop="134228"/>
              <exon start="134803" stop="134894"/>
              <exon start="135166" stop="135234"/>
              <exon start="135925" stop="135982"/>
              <exon start="136089" stop="136188"/>
              <exon start="136504" stop="136590"/>
              <exon start="136685" stop="136763"/>
              <exon start="136898" stop="137030"/>
              <exon start="137099" stop="137206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134836" stop="134894"/>
              <exon start="135166" stop="135234"/>
              <exon start="135925" stop="135982"/>
              <exon start="136089" stop="136188"/>
              <exon start="136504" stop="136590"/>
              <exon start="136685" stop="136763"/>
              <exon start="136898" stop="137030"/>
              <exon start="137099" stop="137282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135206" stop="135234"/>
              <exon start="135925" stop="135982"/>
              <exon start="136089" stop="136188"/>
              <exon start="136504" stop="136590"/>
              <exon start="136685" stop="136763"/>
              <exon start="136898" stop="137030"/>
              <exon start="137099" stop="137204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCAGAAGAGTAATGGCGGAAACAATACCCTTCAAAAATCTTCATAGCAGAGAGTACCAGGGACACAAGAAGAAG : GTGCATTCGGTGGCATGGAACTGCAGTGGCACGAAATTAGCTTCAGGTTCTGTGGATCAAACAGCTCGTATTTGGCAAATTGAGCCTCATGGTCAT : GGAAAGGTAAAAGATGTTGAATTAAAGGGTCACACCGACAGTGTGGACCAGTTATGTTGGGATCCAAAACATGCAGAATTGATAGCTACAGCATCTGGTGACAAGACAGTTCGATTATGGGATGCCCGTA : GTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGG : GATGATGAGCTAACAATCTTGGATGTTCGCAAGTTTAAGCCTATTCATAAGCGCAAGTTTAATTATGAG : GTAAATGAGATTGCATGGAACACGGGTGGCGATATGTTCTTTCTTACAACTGGAAATG : GAACTGTGGAAGTCTTAGCTTATCCGTCTCTACAAGCTGTTAACACGCTTAATGCTCACACTGCTGGTTGTTACTGCATTGCAATTGATCCACTAGGAAG : ATATTTTGCTGTTGGAAGTGCTGATTCATTGGTCAGCCTTTGGAGCATCAAGGAGATGCTATGTCTTCGAACATTTACAAAACTTGA : GTGGCCAGTTCGGACAATAAGTTTCAATCACACAGGAGACTACATTGCCTCTGCTAGTGAAGATTTGTTTATTGATATT : GCTAATGTCCAATCTGGACGGTCAGTTCACCAAATTCCATGTCGTGCTGCCATGAACAGTGTTGAATGGAATCCAAAACACAACTTGCTTGCCTTTGCCGGGGATGATAAGAACAAATACCAGGCTGATGAAG : GTGTGTTTCGCATATTTGGCTTTGAGAGCGCATAGAGCCCTGATGAAAGGTTATAAAAGAGGCCTGAAAAAGATCTTGTATAATTTATGATGAAGAAAGCAAAATTTTCAGATGAACAACTTGTTTACATTGATTTTGTAACATTTATTACATGTCATTTTTGAAAAATGCTGAAAGAGACGTT</gDNA_template>
            <first_frame> K  Q  K  S  N  G  G  N  N  T  L  Q  K  S  S  *  Q  R  V  P  G  T  Q  E  E   : G  A  F  G  G  M  E  L  Q  W  H  E  I  S  F  R  F  C  G  S  N  S  S  Y  L  A  N  *  A  S  W  S   : W  K  G  K  R  C  *  I  K  G  S  H  R  Q  C  G  P  V  M  L  G  S  K  T  C  R  I  D  S  Y  S  I  W  *  Q  D  S  S  I  M  G  C  P  * :   W  E  M  L  T  A  S  *  T  Q  W  G  K  Y  Q  Y  H  L  Q  A  *  W  D  T  Y  S  C  W  E  Q   : G  *  *  A  N  N  L  G  C  S  Q  V  *  A  Y  S  *  A  Q  V  *  L  *   : G  K  *  D  C  M  E  H  G  W  R  Y  V  L  S  Y  N  W  K  W :   N  C  G  S  L  S  L  S  V  S  T  S  C  *  H  A  *  C  S  H  C  W  L  L  L  H  C  N  *  S  T  R  K  :  I  F  C  C  W  K  C  *  F  I  G  Q  P  L  E  H  Q  G  D  A  M  S  S  N  I  Y  K  T  *  :  V  A  S  S  D  N  K  F  Q  S  H  R  R  L  H  C  L  C  *  *  R  F  V  Y  *  Y   : C  *  C  P  I  W  T  V  S  S  P  N  S  M  S  C  C  H  E  Q  C  *  M  E  S  K  T  Q  L  A  C  L  C  R  G  *  *  E  Q  I  P  G  *  *  R :   C  V  S  H  I  W  L  *  E  R  I  E  P  *  *  K  V  I  K  E  A  *  K  R  S  C  I  I  Y  D  E  E  S  K  I  F  R  *  T  T  C  L  H  *  F  C  N  I  Y  Y  M  S  F  L  K  N  A  E  R  D  V </first_frame>
            <second_frame>  S  R  R  V  M  A  E  T  I  P  F  K  N  L  H  S  R  E  Y  Q  G  H  K  K  K  :  V  H  S  V  A  W  N  C  S  G  T  K  L  A  S  G  S  V  D  Q  T  A  R  I  W  Q  I  E  P  H  G  H  :  G  K  V  K  D  V  E  L  K  G  H  T  D  S  V  D  Q  L  C  W  D  P  K  H  A  E  L  I  A  T  A  S  G  D  K  T  V  R  L  W  D  A  R   : S  G  K  C  S  Q  Q  V  E  L  S  G  E  N  I  N  I  T  Y  K  P  D  G  T  H  I  A  V  G  N  R  :  D  D  E  L  T  I  L  D  V  R  K  F  K  P  I  H  K  R  K  F  N  Y  E  :  V  N  E  I  A  W  N  T  G  G  D  M  F  F  L  T  T  G  N   : G  T  V  E  V  L  A  Y  P  S  L  Q  A  V  N  T  L  N  A  H  T  A  G  C  Y  C  I  A  I  D  P  L  G  R :   Y  F  A  V  G  S  A  D  S  L  V  S  L  W  S  I  K  E  M  L  C  L  R  T  F  T  K  L  E :   W  P  V  R  T  I  S  F  N  H  T  G  D  Y  I  A  S  A  S  E  D  L  F  I  D  I  :  A  N  V  Q  S  G  R  S  V  H  Q  I  P  C  R  A  A  M  N  S  V  E  W  N  P  K  H  N  L  L  A  F  A  G  D  D  K  N  K  Y  Q  A  D  E   : G  V  F  R  I  F  G  F  E  S  A  *  S  P  D  E  R  L  *  K  R  P  E  K  D  L  V  *  F  M  M  K  K  A  K  F  S  D  E  Q  L  V  Y  I  D  F  V  T  F  I  T  C  H  F  *  K  M  L  K  E  T   </second_frame>
            <third_frame>   A  E  E  *  W  R  K  Q  Y  P  S  K  I  F  I  A  E  S  T  R  D  T  R  R  R :   C  I  R  W  H  G  T  A  V  A  R  N  *  L  Q  V  L  W  I  K  Q  L  V  F  G  K  L  S  L  M  V  M :   E  R  *  K  M  L  N  *  R  V  T  P  T  V  W  T  S  Y  V  G  I  Q  N  M  Q  N  *  *  L  Q  H  L  V  T  R  Q  F  D  Y  G  M  P  V  :  V  G  N  A  H  S  K  L  N  S  V  G  K  I  S  I  S  L  T  S  L  M  G  H  I  *  L  L  G  T  G :   M  M  S  *  Q  S  W  M  F  A  S  L  S  L  F  I  S  A  S  L  I  M  R :   *  M  R  L  H  G  T  R  V  A  I  C  S  F  L  Q  L  E  M  :  E  L  W  K  S  *  L  I  R  L  Y  K  L  L  T  R  L  M  L  T  L  L  V  V  T  A  L  Q  L  I  H  *  E   : D  I  L  L  L  E  V  L  I  H  W  S  A  F  G  A  S  R  R  C  Y  V  F  E  H  L  Q  N  L   : S  G  Q  F  G  Q  *  V  S  I  T  Q  E  T  T  L  P  L  L  V  K  I  C  L  L  I  L :   L  M  S  N  L  D  G  Q  F  T  K  F  H  V  V  L  P  *  T  V  L  N  G  I  Q  N  T  T  C  L  P  L  P  G  M  I  R  T  N  T  R  L  M  K  :  V  C  F  A  Y  L  A  L  R  A  H  R  A  L  M  K  G  Y  K  R  G  L  K  K  I  L  Y  N  L  *  *  R  K  Q  N  F  Q  M  N  N  L  F  T  L  I  L  *  H  L  L  H  V  I  F  E  K  C  *  K  R  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131633" stop="131707"/>
                    <exon start="131849" stop="131944"/>
                    <exon start="134099" stop="134228"/>
                    <exon start="134803" stop="134894"/>
                    <exon start="135166" stop="135234"/>
                    <exon start="135925" stop="135982"/>
                    <exon start="136089" stop="136188"/>
                    <exon start="136504" stop="136590"/>
                    <exon start="136685" stop="136763"/>
                    <exon start="136898" stop="137030"/>
                    <exon start="137099" stop="137133"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>951</number_coding_nucleotides>
                  <number_encoded_amino_acids>317</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRRVMAETIPFKNLHSREYQGHKKKVHSVAWNCSGTKLASGSVDQTARIWQIEPHGHGKVKDVELKGHTDSVDQLCWDPKHAELIATASGDKTVRLWDARSGKCSQQVELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNTGGDMFFLTTGNGTVEVLAYPSLQAVNTLNAHTAGCYCIAIDPLGRYFAVGSADSLVSLWSIKEMLCLRTFTKLEWPVRTISFNHTGDYIASASEDLFIDIANVQSGRSVHQIPCRAAMNSVEWNPKHNLLAFAGDDKNKYQADEGVFRIFGFESA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="138412" PGL_stop="137162"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138412" e_stop="137828"/>
            <exon e_start="137735" e_stop="137162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.994" e_score="0.998"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="138412" e_stop="137828" e_length="585"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.994">
            <gDNA_intron_boundary i_start="137827" i_stop="137736" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="137735" e_stop="137162" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138412" stop="137869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138198" stop="137828"/>
              <exon start="137735" stop="137198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138081" stop="137828"/>
              <exon start="137735" stop="137292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318192" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137898" stop="137828"/>
              <exon start="137735" stop="137169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137898" stop="137828"/>
              <exon start="137735" stop="137418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280030" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137510" stop="137162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGACAGTATTAGGAGAGAAATATTTCAGATCTGTTGTTTTTTCTTTATATTTCATGCTCTGTTTTTTACGATTCTGTTCACCTCTGTTTCTGAGGACCACCTTGATGGTAAGGTTATGTGTCAAAAATGGTGGATTCCTTCGATTCTATCAGTTTGTACTTCGTTTTGTATTGTGTTTTTGGTGCAGGTGAAACTTTACAGGTTTTGGAAGGTATCGAGGCAGTTGCAGAGGGAGAAGGGGGATGGTAGAGCACTGACAAGGTGCATTTCGGAGTTGAGGATGAAAGGAGCGAGTTTTGATCTGTCGAAAGAGCCACAGATTGGGAAGAAGATGAAGAGCTCTAGTGTGGAGATCAAATGGAAGCCATTAACTTGGTTATCTCAGTATGCTGTAACTATCTGTCTCATTTGTTTTACAGGATTGCTCTTCCCTGCTTCCAGGCTCGTCCTTTGCGCTTGATGTACTTCGTCTTCAATCTCTCTTCTTACACAAATCAGCAAATTTGGAATCTGGAAAGAGTTGTTCTTTGCTTCAAAGAACTTGCAGACATCCAAGTCGAGGCATTCGTACATGAATGAAAATG : GGAATATACAGTCTCAAACCTGATGTTTCCCACATAGAGCCGTCTGGCCGGAAAAAGAACCCAAAGGCAACAGGAGAAGAGTTGTCCACCAGCAGAGAAAAATGGACAGTCCAGTGCACAGAACATTCAATATTCAGGCAGGGATCTGGAAAAGGAACACACACACCCCAAGGGACGGGCACCACAGCTCAAGCATCACATGAAAACTCTACCATTGCTCCAAGCTCCTTTCAGGGTGCTAGCCAATGATGCCTACACACAATTTCTTTACACCTCCATCTCAATCATGCTGCAATGACATCAATATTGGAAACTTGCTCACCATTGCGGTGTCTCGACTCAGCTATCAGGCTCACTGCTCTGCCCACTGCATGAGCGGAAGAGCAGAGATCTAGAGTTTTAACAGCCAGCACTTTTGAAGTTTGCAGATTTGGGAAACACTGCCCATGTTCTAACGTCTCTTTCAGCATTTTTCAAAAATGACATGTAATAAATGTTACAAAATCAATGTAAACAAGTTGTTCATCTGAAAATTTTGCTTTCTTCATCATAAATTATACAAGATCTTTTTCAG</gDNA_template>
            <first_frame> W  T  V  L  G  E  K  Y  F  R  S  V  V  F  S  L  Y  F  M  L  C  F  L  R  F  C  S  P  L  F  L  R  T  T  L  M  V  R  L  C  V  K  N  G  G  F  L  R  F  Y  Q  F  V  L  R  F  V  L  C  F  W  C  R  *  N  F  T  G  F  G  R  Y  R  G  S  C  R  G  R  R  G  M  V  E  H  *  Q  G  A  F  R  S  *  G  *  K  E  R  V  L  I  C  R  K  S  H  R  L  G  R  R  *  R  A  L  V  W  R  S  N  G  S  H  *  L  G  Y  L  S  M  L  *  L  S  V  S  F  V  L  Q  D  C  S  S  L  L  P  G  S  S  F  A  L  D  V  L  R  L  Q  S  L  F  L  H  K  S  A  N  L  E  S  G  K  S  C  S  L  L  Q  R  T  C  R  H  P  S  R  G  I  R  T  *  M  K  M  :  G  I  Y  S  L  K  P  D  V  S  H  I  E  P  S  G  R  K  K  N  P  K  A  T  G  E  E  L  S  T  S  R  E  K  W  T  V  Q  C  T  E  H  S  I  F  R  Q  G  S  G  K  G  T  H  T  P  Q  G  T  G  T  T  A  Q  A  S  H  E  N  S  T  I  A  P  S  S  F  Q  G  A  S  Q  *  C  L  H  T  I  S  L  H  L  H  L  N  H  A  A  M  T  S  I  L  E  T  C  S  P  L  R  C  L  D  S  A  I  R  L  T  A  L  P  T  A  *  A  E  E  Q  R  S  R  V  L  T  A  S  T  F  E  V  C  R  F  G  K  H  C  P  C  S  N  V  S  F  S  I  F  Q  K  *  H  V  I  N  V  T  K  S  M  *  T  S  C  S  S  E  N  F  A  F  F  I  I  N  Y  T  R  S  F  S  </first_frame>
            <second_frame>  G  Q  Y  *  E  R  N  I  S  D  L  L  F  F  L  Y  I  S  C  S  V  F  Y  D  S  V  H  L  C  F  *  G  P  P  *  W  *  G  Y  V  S  K  M  V  D  S  F  D  S  I  S  L  Y  F  V  L  Y  C  V  F  G  A  G  E  T  L  Q  V  L  E  G  I  E  A  V  A  E  G  E  G  G  W  *  S  T  D  K  V  H  F  G  V  E  D  E  R  S  E  F  *  S  V  E  R  A  T  D  W  E  E  D  E  E  L  *  C  G  D  Q  M  E  A  I  N  L  V  I  S  V  C  C  N  Y  L  S  H  L  F  Y  R  I  A  L  P  C  F  Q  A  R  P  L  R  L  M  Y  F  V  F  N  L  S  S  Y  T  N  Q  Q  I  W  N  L  E  R  V  V  L  C  F  K  E  L  A  D  I  Q  V  E  A  F  V  H  E  *  K  W :   E  Y  T  V  S  N  L  M  F  P  T  *  S  R  L  A  G  K  R  T  Q  R  Q  Q  E  K  S  C  P  P  A  E  K  N  G  Q  S  S  A  Q  N  I  Q  Y  S  G  R  D  L  E  K  E  H  T  H  P  K  G  R  A  P  Q  L  K  H  H  M  K  T  L  P  L  L  Q  A  P  F  R  V  L  A  N  D  A  Y  T  Q  F  L  Y  T  S  I  S  I  M  L  Q  *  H  Q  Y  W  K  L  A  H  H  C  G  V  S  T  Q  L  S  G  S  L  L  C  P  L  H  E  R  K  S  R  D  L  E  F  *  Q  P  A  L  L  K  F  A  D  L  G  N  T  A  H  V  L  T  S  L  S  A  F  F  K  N  D  M  *  *  M  L  Q  N  Q  C  K  Q  V  V  H  L  K  I  L  L  S  S  S  *  I  I  Q  D  L  F  Q </second_frame>
            <third_frame>   D  S  I  R  R  E  I  F  Q  I  C  C  F  F  F  I  F  H  A  L  F  F  T  I  L  F  T  S  V  S  E  D  H  L  D  G  K  V  M  C  Q  K  W  W  I  P  S  I  L  S  V  C  T  S  F  C  I  V  F  L  V  Q  V  K  L  Y  R  F  W  K  V  S  R  Q  L  Q  R  E  K  G  D  G  R  A  L  T  R  C  I  S  E  L  R  M  K  G  A  S  F  D  L  S  K  E  P  Q  I  G  K  K  M  K  S  S  S  V  E  I  K  W  K  P  L  T  W  L  S  Q  Y  A  V  T  I  C  L  I  C  F  T  G  L  L  F  P  A  S  R  L  V  L  C  A  *  C  T  S  S  S  I  S  L  L  T  Q  I  S  K  F  G  I  W  K  E  L  F  F  A  S  K  N  L  Q  T  S  K  S  R  H  S  Y  M  N  E  N   : G  N  I  Q  S  Q  T  *  C  F  P  H  R  A  V  W  P  E  K  E  P  K  G  N  R  R  R  V  V  H  Q  Q  R  K  M  D  S  P  V  H  R  T  F  N  I  Q  A  G  I  W  K  R  N  T  H  T  P  R  D  G  H  H  S  S  S  I  T  *  K  L  Y  H  C  S  K  L  L  S  G  C  *  P  M  M  P  T  H  N  F  F  T  P  P  S  Q  S  C  C  N  D  I  N  I  G  N  L  L  T  I  A  V  S  R  L  S  Y  Q  A  H  C  S  A  H  C  M  S  G  R  A  E  I  *  S  F  N  S  Q  H  F  *  S  L  Q  I  W  E  T  L  P  M  F  *  R  L  F  Q  H  F  S  K  M  T  C  N  K  C  Y  K  I  N  V  N  K  L  F  I  *  K  F  C  F  L  H  H  K  L  Y  K  I  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138410" stop="137952"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSIRREIFQICCFFFIFHALFFTILFTSVSEDHLDGKVMCQKWWIPSILSVCTSFCIVFLVQVKLYRFWKVSRQLQREKGDGRALTRCISELRMKGASFDLSKEPQIGKKMKSSSVEIKWKPLTWLSQYAVTICLICFTGLLFPASRLVLCA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0032F07.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137698" stop="137438"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRLAGKRTQRQQEKSCPPAEKNGQSSAQNIQYSGRDLEKEHTHPKGRAPQLKHHMKTLPLLQAPFRVLANDAYTQFLYTSISIMLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 191 chains have been computed
$ 
$ memory statistics:
$ 1192960 bytes spliced alignments in total
$ 164 spliced alignments have been stored
$ 7274 bytes was the average size of a spliced alignment
$ 34984 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1749 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 223 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-23 02:14:22
-->
