<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-23 03:40:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340974" ref_strand="+" ref_description="SGN-U340974        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G05030.1 | Symbol: None | hexose transporter, putative, similar to hexose transporters from Nicotiana tabacum (GI:8347244), Solanum tuberosum (GI:8347246), Arabidopsis thaliana (GI:8347250); contains Pfam profile PF00083: major facilitator superfamily protein | chr1:1438151-1441416 REVERSE | Aliases: T7A14.10, T7A14_10 (evalue: 8e-49, score=100) genbank/nr: sugar(evalue: 3e-22, score=108)">
      <seq>caatgctctatattgctagtgttccaggatttatcctagctcttggtatgccaattttccgttgagagcccctcgctggctatgccaagagatatatgtaggctgggagactcgatgaggcaaaaaaagtcatcaataacttatggggttcatcagaagtagataaagctatcaaagaatttgagtctgtcctaaagaatgatgggggtgacttgaacagcagttggctggagctcctagaggaaccacactccagaggttgtatgaagttgctaccattggaggtgccttgtttgtacttcaacagcttgctggtataaatggagttctgtacttttcatccttgactttcaaagatgttggaatctcaagcagcgctttaacaagcttatatgtgggactaaccaactttgcaggtatgtaatgggttcaatcacttgagatgcgctttacaagacctgctaaatttcacgtcgttccaagataatgtttagttgtcactatgtgcttcttgcangtgcactatgtgctttatacttgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="+" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="27303" stop="29200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27603" g_stop="27688" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27689" i_stop="27750" i_length="62">
            <donor d_prob="0.997" d_score="0.85"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27751" g_stop="27930" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="269" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27931" i_stop="28624" i_length="694">
            <donor d_prob="0.762" d_score="0.98"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28625" g_stop="28900" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="545" r_length="276" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="+" ref_id="SGN-U340974" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27603" e_stop="27688"/>
          <exon e_start="27751" e_stop="27930"/>
          <exon e_start="28625" e_stop="28900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGCTCTATATTGCTAGTGTTCCAGGATTTATTCTAGCACTTGGTATG-CAATTTTCCGTTGAGAG-CCCTCGCTGGCTATGC-AAGGTATCGGTTTAATTCATGACATGTTTATATTAAATATGTACTGCTTCTAATTTTCCTATCAGAGATATATGTAGGCTGGGAGACTCGATGAGGCAAAAAAAGTCATCAATAACTTATGGGGTTCATCAGAAGTAGATAAAGCTATCAAAGAATTTGAGTCTGTCCTAAAGAATGATGGGGATGACTTGAACAGCAGTTGGCTGGAGCTCCTAGAGGAACCACACTCGAGAGGTTGTATGAAGGTGGTTTGTTAATACATGATCCTTTAATAGGTTTAAGGTGGTCGTTTAGATTTCATATATTAAGCTTCATGTGCTAATTTTGATCCGTTCAGGTGCCTAAAATCTCCATACATTGCAAACCATTTTCTTTCTTTGTTTGATTCAAGTAGATTGATTTGAATTTGATGGTTGTCATTTAACTTCTTACGCATTGTATTTTGGGGGTTTGGGGGGAATATCATTAAAATGTGCTTGAAATTTTTAAACTGCACATTTCTGGCATAATATTATGAGTCTTCTCCTACAGTGTATGTCTGGAGCTGCGCCGGATTGCTCTTCATTTGAGTTAGCTGGCAACATTTAACAGCTGCCTCCACTTCGTAGAGTTGAACACTTCTGAACATTTTTAAAAATGACGTCTGGCATTTAATTGATTATCATCTGCTCAACTCGTTGAAAGTTGTAATGTTCTTCGATTGTTTTTCAAGACTACCCTATACAGATTTTTGGTTACACTATAACTTGTTTGGCTAGAGCCCATGGTTAATATCTTCCACTGTTGTCTTAAGTTTTTCCTGGTGTGTTGGATACTCAAACATCTTGGTGTAAAATGTGCCATAATCTGCTGAGTGCTGATATTATGCATGTTGTACGAGCATGCATATAAAAGTGTCAATCCTCCAAATTAGGCTTCAACTTTGTTCATTTCCTGCAGTTGCTACCATTGGAGGTGCCTTGTTTGTACTTCAACAGCTTGCTGGTATAAATGGAGTTCTGTACTTTTCATCCTTGACTTTCAAAGATGTTGGGATCTCAAGCAGCGCTTTAGCAAGCTTATATGTGGGACTGACCAATTTTGCAGGTATATAATGGGTTCAATCACTTGAGACGTGCTTTACAAGGCCTGCTAAATTTCACGTCGTTCCAAGATAATGTTTAGTTGTCGCGACGTGTTTCTTGCAGGTGCACTATGTGCTTTATACTTGATGGA</genome_strand>
        <mrna_strand>CAATGCTCTATATTGCTAGTGTTCCAGGATTTATCCTAGCTCTTGGTATGCCAATTTTCCGTTGAGAGCCCCTCGCTGGCTATGCCAAG..............................................................AGATATATGTAGGCTGGGAGACTCGATGAGGCAAAAAAAGTCATCAATAACTTATGGGGTTCATCAGAAGTAGATAAAGCTATCAAAGAATTTGAGTCTGTCCTAAAGAATGATGGGGGTGACTTGAACAGCAGTTGGCTGGAGCTCCTAGAGGAACCACACTCCAGAGGTTGTATGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTACCATTGGAGGTGCCTTGTTTGTACTTCAACAGCTTGCTGGTATAAATGGAGTTCTGTACTTTTCATCCTTGACTTTCAAAGATGTTGGAATCTCAAGCAGCGCTTTAACAAGCTTATATGTGGGACTAACCAACTTTGCAGGTATGTAATGGGTTCAATCACTTGAGATGCGCTTTACAAGACCTGCTAAATTTCACGTCGTTCCAAGATAATGTTTAGTTGTCACTATGTGCTTCTTGCANGTGCACTATGTGCTTTATACTTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343345" ref_strand="+" ref_description="SGN-U343345        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G05030.1 | Symbol: None | hexose transporter, putative, similar to hexose transporters from Nicotiana tabacum (GI:8347244), Solanum tuberosum (GI:8347246), Arabidopsis thaliana (GI:8347250); contains Pfam profile PF00083: major facilitator superfamily protein | chr1:1438151-1441416 REVERSE | Aliases: T7A14.10, T7A14_10 (evalue: 3e-27, score=119) genbank/nr: gi|55733727|gb|AAV59260.1| At1g05030 [Arabidopsis thaliana] >gi|53828535|gb|AAU94377.1| At1g05030 [Arabidopsis thaliana] >gi|42561706|ref|NP_171996.2| hexose transporter, putative [Arabidopsis thaliana] (evalue: 2e-25, score=119)">
      <seq>cacgtactggtcttataataccagagctcagcagcagcaggacacgggggaagataatggcctttagtttctccgttcattgggtcttcaacttcttggtgggtctgttttttctagaactcgttcagaaatttggtgttgctccagtttatggaagcttcggtgctgtttcattgttggcaacagcctttgcttacttcttaatagttgagactaaaggatcgcccttgaagagattgaaatgtcactaaatcccaaatttcagggcaaacgtaattcagaataatctcatctcatggctcatactgaagaaaaattggagattctggagaaactgcaggggcttgtggaacaaaaagtcgaacaactctatgcgcgattttctttcattttatactagtagttaaagcaacattgtaaattgaagtttgatatcactcttgtatgtttgttctgcaaactcaaaatggtcatttttcttcttccaagggcattgtacatgatgtttaggttccctgtaaattgttggcaccattttcagcttcaaacaaagagagtatattcttcagagcaattgtttgaattgccaaaatacattttaggtttttaaaatttattttcaagtcaaactaactcacgtaaattgtgatacgcagagagtatttattaagaccaataaaattaaagttattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="+" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="29138" stop="30574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29438" g_stop="29520" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29521" i_stop="29647" i_length="127">
            <donor d_prob="0.645" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29648" g_stop="30276" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="702" r_length="619" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="+" ref_id="SGN-U343345" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29438" e_stop="29520"/>
          <exon e_start="29648" e_stop="30276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAACTGGTCTTATAATACAAGAGCTCAGCAGCAGCAGGACACGGGGGAAGATAATGGCCTTTAGTTTCTCCGTTCATTGGGTATGTATCAAGATCATGCGTGTCATTTCAGTGCTTCAGACCAACTAGCTTCAATCTATTAAGTACTTAGGTCGCACGAACAAACTAAGTTTCTATTTATCTTGACTTGTTGATGGTGAATAAACAGGTCTTCAACTTCTTGGTGGGTCTGTTTTTTCTAGAACTCGTTCAGAAATTTGGTGTTGCTCCAGTTTATGGAAGCTTCGGTGCTGTTTCATTGTTGGCAACAGCCTTTGCTTACTTCTTAATAGTTGAGACTAAAGG-TCGATCCCTTGAAGAGATTGAAATGTCACTAAATCCCAAATTTCAGGGCAAACGTAATTCAGAATAATCTCATCTCATGGCTCATACTGAAGAAAAATTGGAGATTCTGGAGAAACTGCAGGGGCTCGTGGAACAAAAAGTCGAAAATAGCACTACTCTATGCGCGATTTTATTTCATTTTATACTAGTAGTTAAAGCAACATTTGTAAATTAAAGTTTGATATCACTCTTGTATGTTTGTTCTGCAAACTCAATATGGTCATTTTTCTTCTTCCAAGGGCATTGTACATGATGTTTAGGTTCCCTGTAAATTGTTGGCACCATTTTCAGCTTCAAACAAAGAGAGTTATATTCTTCGGAGCAATTGTTTGAATTGCCAAAATACATTTTAGGTTCTTGAAACTTATTTTCAAGTCAAACTAACTCACGTAAATTGTGACACGCGGAGAGTATTTATTAAGACCAATAAAATTGAAGTTATTAAAAAAGATT</genome_strand>
        <mrna_strand>CACGTACTGGTCTTATAATACCAGAGCTCAGCAGCAGCAGGACACGGGGGAAGATAATGGCCTTTAGTTTCTCCGTTCATTGG...............................................................................................................................GTCTTCAACTTCTTGGTGGGTCTGTTTTTTCTAGAACTCGTTCAGAAATTTGGTGTTGCTCCAGTTTATGGAAGCTTCGGTGCTGTTTCATTGTTGGCAACAGCCTTTGCTTACTTCTTAATAGTTGAGACTAAAGGATCG--CCCTTGAAGAGATTGAAATGTCACTAAATCCCAAATTTCAGGGCAAACGTAATTCAGAATAATCTCATCTCATGGCTCATACTGAAGAAAAATTGGAGATTCTGGAGAAACTGCAGGGGCTTGTGGAACAAAAAGTCG---A-A-CA--ACTCTATGCGCGATTTTCTTTCATTTTATACTAGTAGTTAAAGCAACA-TTGTAAATTGAAGTTTGATATCACTCTTGTATGTTTGTTCTGCAAACTCAAAATGGTCATTTTTCTTCTTCCAAGGGCATTGTACATGATGTTTAGGTTCCCTGTAAATTGTTGGCACCATTTTCAGCTTCAAACAAAGAGAG-TATATTCTTCAGAGCAATTGTTTGAATTGCCAAAATACATTTTAGGTTTTTAAAATTTATTTTCAAGTCAAACTAACTCACGTAAATTGTGATACGCAGAGAGTATTTATTAAGACCAATAAAATTAAAGTTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317263" ref_strand="+" ref_description="SGN-U317263        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:At4g04260.1); similar to receptor like protein [Oryza sativa (japonica cultivar-group)] (GB:XP_482453.1); contains InterPro domain Zn-finger-like, PHD finger (InterPro:IPR001965); contains InterPro domain Bromo adjacent region (InterPro:IPR001025) | chr4:11727755-11730501 REVERSE | Aliases: None(evalue: 2e-37, score=152) genbank/nr: gi|50900110|ref|XP_450843.1| putative zinc-finger motif [Oryza sativa (japonica cultivar-group)] >gi|51963770|ref|XP_506665.1| PREDICTED OSJNBa0048A13.16 gene product [Oryza sativa (japonica cultivar-group)] >gi|49387718|dbj|BAD26108.1| putative zinc-finger motif [Oryza sativa (japonica cultivar-group)] (evalue: 2e-35, score=152)">
      <seq>aaagctgcccaggggggtttactcctgaccgtgttgctgtgtattgtaagtgtgagatgccctacaaccctgatgatctcatggtacaatgtgaaggatgcaaagactggtttcatccctcttgtatgggtatgtccattgatgaagcaaagacattagagcatttcttgtgttctgactgttcctcagaagatgaaaccaaacgtcctttgaactcatttcatgtttcaccacctgatgaagcaaaggtggagtcaaagcgcaggaagagataaatagctgaccttgatgcagtatgaggaggtgcctgtttctatatattggattacatgtgaagctggatgtatgatgacaagcctgtaaaagctgatcaagaatcatattgatgaataagaactttgcctcatcttgagttgcaatatatctgtggttaggatctcctgatcaagaatcatattacaacaacttacccagtgtaaccccagaagtacgcatatcttacctcttccttaaaaggaagagaagcctgatcgagaatcatattacaacaacatatccagtgtaaccccacaagtacacataccttacctcttccttaaaaggaagagaagcctgatcgagaatcatattacaacaacatacccagtgtgtaatcccaggagtacacaaaccttatctcttccttgaaaggaagaaagccctgatcaagaatcatatttgtactgtactaattcgcttaaattttcctgggaactcgttgatcaatagtgatctccttagtaaatgtcccttgctacaatccttgtatgtggttaatggaagattgagagacttccgctgctgaaaatgaagttatttatgctaattgggcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="+" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="35187" stop="40494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35487" g_stop="35527" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35528" i_stop="35652" i_length="125">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35653" g_stop="35721" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="109" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35722" i_stop="36500" i_length="779">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36501" g_stop="36639" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="248" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36640" i_stop="39210" i_length="2571">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39211" g_stop="39265" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="303" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39266" i_stop="39625" i_length="360">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39626" g_stop="40194" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="873" r_length="570" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="874" polyA_stop="890"/>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="+" ref_id="SGN-U317263" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35487" e_stop="35527"/>
          <exon e_start="35653" e_stop="35721"/>
          <exon e_start="36501" e_stop="36639"/>
          <exon e_start="39211" e_stop="39265"/>
          <exon e_start="39626" e_stop="40194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGCCACAGGGGGGTTTACTCCTGACCGTGTTGCTGTGTGAGTTTCTAATAGCTTTGCTGCTTAACTCGATGCTACTTCATCCTTTTCTCAGTGGAAGTTGAAAGTTATGTTTTGTAGTGTTTACTAAAACCTGGATACTTTGGGATGTTTTGATTTTGAAGGTATTGTAAGTGTGAGATGCCCTACAACCCTGATGATCTCATGGTACAATGTGAAGGATGCAAAGACTGGTATGCCTCCAAATGTCCACAAATTCATCTTCTTTACGCATTTGCATGCCTTTTCTACTTCTATGCATGGAAATTCACAAGTGTCTATCCATTTAATGTTTTAGTTAAAACAAATGGATATCTTCAAATGTGTAATTACTTTCAGTTTAGATCAAGCGTGATGTAAGGACAAATTAATGTTCAGTCAACTTCAAAGGGCACATAGCTTGAAAAGGCAACAAATGAATTGTGTCATGTTTCCCGCTTCTCTTTTTTATCAGCAAATGCAGCAAGTTTAATTAGTTCATCCATGCAGAGTTTATCTTCTTAAAGTGGATTATTAAGTTGTCCTGCCTTTTTAGTGTCCACTATCCACATTATATTACTATGTCAACCAGGGATAATAAAGGTTCATCTATGATTTTTAGTTATATGTCCAATTACTTACATCCCATATCAAGCTATTATCTCAACGTTGGTTGATAAACTAAGTTTCTTTAGAATGAAATCTGTGATGAGAACTGGAAACTTTTATTAGAAGTACAAAAGTACCTATCTTGGTATATAACTTAAGAAGGAAGAGTCTTCATAAGTCTAAAGTATGCATTAAGAAATGTAAAATCTTCCCGTGTCTGTAATTGTCTCCATTGAATTTGGGTAAAATGGCTACACTCTTCAGCATCTTTAATCAGGAAACCTGAGTCATGGAGTTTTTAGTTTACCCTAATTTTCTAAATTACGATTAGTTGATAACCGTATCTATAAAAAATCTTTTCATTTATCCTGCAATTCTATTGCAGGTTTCATCCCTCTTGTATGGGTATGTCCATTGATGAAGCAAAGACATTAGAGCATTTCTTGTGTTCTGACTGTTCCTCAGAAGATGAAACCAAACGTCCTTTGAACTCATTTCATGTTTCACCACCTGATGAAGCAAAGGTAAAAACTCTGTACACTCACCTGGTAAACTTTTACATGATATTATTAGTAATATCTGCAAGTATTGTATCTCAAGTTAGTCAACAGACTGTTGTTGTTTGTGATAGAAAGGGTGAACTTTTTGCACTATGTTCTCATGTGTAGCGTGACATTTAGGATCATTATGGAAGGAGAAGGTCGCGCTTCTGAAAGTGGTGCATGTTTAGTTTGGTTATATCTAATATATCAGATTCTAACCATAAGGGGTCGTTTGATGTGAGGGATAAGAATATATAGTCTTGGGATTAAAAAAATAGTCCTGGGATAAAAGTTTGGTGTTTTGTTTGGTTGACATGTTTGGTATAACTTATCCCAACGACCCCTAAGGGAAGGAGAAAGGCAGGCTAGTGGAAGGGTATCTCCAAAGTCATGATGTTACCTGCTCATCTGATGTAAATTGATGTACTGGGCTACTGATATAATCAATGACTAATGACAAAGTTAAGCTTGTTTCAATCTCTCTGAGGTTCCACAAGGGAAAGCATACAAAAGTGCAAAGCATGGATGACCTGGGGATGGAGAATGTTGGAAGTTATAGGACTATAAGTCAGCTTGGAAAATATGATTTAAGTCCCTGCTGAACTGTATCTTTCTTCAGATACGGTCTTCATATTTACCTAGTAGGAGAACTCGAATTACTCACTCTTACATTGGCTTCAGTCGAGTTTGGAACTACTTTCACTGGGAACAGATGACATTAGTTGAGTGGAATCTCAGTAGGTTAAGAGTCTTTTTACCAACATAAAGAAAACTAGTCGCTATAGGATCATTACCTATGTTGCTCAGACTTTTCAAAAATGTCAATAGGTGCATGTTGGATTCTCCAAAAGTAGTATTTTTAAGAATCCGACACGGGTGTGGCATTGAAACTGAAGAGTCCAAAAACTTAGTTCATTAACTTCAATATAGAGGATTATCATAGCTAGACTATTGTTCGGCTGGTCATGAAGCTACCTCAATCCTTCTTTATCCAAGCTTGTGACTGAAAATGCTCACATTATAATAGTTGCTTGATACTCTTAGTATTTGGATTTTTGTCATTTAGTGTTGAAGGTATTGGAGACACATTTAATAAGGTTGGAACGAAGTTATTCATTTAGGAAAAAATGACATATTTGGAGCAATTCGAAAGCAAAAGTTGAACAATTACATGTTAAAATAATCTGGGAGTATTCTGTAATTGTTGCTTCACTAACCATATGTCCACTGCTAAGGTGCAGAACTCCACTTTCTTACTTTAATATGATGTCAGGTCATTTGGTTTTCCATATAGCTCGTGAGTACTTCATCTAATTCTTTTAGAATGTGTGGGATAATATATTTGAGATATAAAGGAGTTCAGATAGCCTCTTGGGTGTCACCTTCCTTTTTATCCTTTGAAGATGATGTAAATTATTGTGAAGGTCTTTATAAAAGATACAACAAACTATTGTTGCTAAGGTTAAATATCAAAGATGAATTCCTACATATTGTTCTAATTTTCTGTGCTGTCTAGACCGTTGCATATTACTTTCATTTCTTAAACTTAAAATTTTCCTCACATAAAACCATGTAGGCTTTGATAATTTTTGAAGGTAAGTTAACAATGTAGGCTTTTGTATAAGAGGAGCTAAGCAGAAATCCTATACTTGTTCTCAAGTGAAAGGACTACCCATTCTTTTATAGATGAAAGACCTAAGGAAATTTGTATGTCAATAATTTTTGGAGAAAAGTAATCATGATCACATGCAGAACACGTGGGCCAGACCCCTTTAACCCTGTTTGGCACGGAGATCGTGCACCAATGCTTGTCGAAGTTGGTTTTGGATTTAGATCCTTTGCTATATCTATGAGACTTCTGTTTGTCAAGATATTGTGTTTTGAGGTAATTGGTGTCGATATTTTCTCTCTGCCATGGTATTTCATGCAAGAATTCAGTGGGAAGAAGAGTAGATTATGCAGCGACATTTTTGTAAGAGAAGTGGGGGGTGGTTGTTAATAGGAAAACTAAATGGCGTGAATGTTTGATAAATTGACAGAATGGGTTGTAGTTGTGGTGTTATGGGCGAACGAGAGTTAGAAGTAGTTGATATGGTTTGAGGGGGAGAGATAAGTTGCGCATGAGTGGCTGAATAGTCATATGTTGAGCTATTTATTGAAATTCTCTTCTAATGAATAGATAGGAGATTTAAAAGGCCGCATATGTATCCCTTCACATCTTTCTGTGTGTCATGAAGGGGATCACATTGTTTTATATTTGTAAACCGAGAAAATTCTCTGTTTCCAGCTTTGAATATCGGTGGATAAAGGTGCCTCTCCACTGTATTCTTTGACTTAACAAAAACAAAGGACCTTCTCACTGTAAGCCTGAATTTGAGCTCGTGACCTGCAATGTACGTACCTTTATTGAACCAAAGCTGTGGGGGGTTCCTGAAGGTGATTGCTTCATGATACTGCTATCCCATTAATTTAAGCTCTCTTTTGTACTCTTGACTGTAAGTTATCTGTAACTGACAAGCATTTTAGCTAAACTGCCACTATTCCTGTTGCCAGGTGGAGTCAAAGCGCAGGAAGAGATAAATAGCTGACCTTGATGCAGTATGAGGAGGTACACATTTTCTTGCATAGTAGCACTGGCATTGTTGTATGTGTTATCTTATTGTATAGCACTGGGAGATCACTATCCTTTTTGTAAAAGCCAGAAACCTTCTCTATTTAATGTGACAACTTGCTATTTATAAAAGTTTGTGCACTAGACTGGGTTGTGTCTACTGAATGCAATTTGTGTGGCCTCATGCATGAGTTATAACTGAATATTGCAGAGTCTACCAAAACATGAATCTTAATGAGTCTACCAAAAGATGAATCTTAATTTATACAAATATTGGGAACATTGCAAATTTAGGTGCCTATTTCTATTTTGATTTTATAACTCTCCTCTTCCTGTATCTGCCCCTGCCCCCGTTAGGTGCCTGTTTCTATATATTGGATTACATGTGAAGCTGGATGTATGATGACAAGCCTGTAAAAGCTGATCAAGAATCATATTGATGAATAAGAACTTTGCCTCATCTTGAGTTGCAATATATCTGTGGTTAGGATCTCCTGATCAAGAATCATATTACAACAACTTACCCAGTGTAACCCCAGAAGTACGCATATCTTACCTCTTCCTTAAAAGGAAGAGAAGCCTGATCGAGAATCATATTACAACAACATATCCAGTGTAACCCCACAAGTACACATACCTTACCTCTTCCTTAAAAGGAAGAGAAGCCTGATCGAGAATCATATTACAACAACATACCCAGTGTGTAATCCCAGGAGTACACAAACCTTATCTCTTCCTTGAAAGGAAGAAAGCCCTGATCAAGAATCATATTTGTACTGTACTAATTCGCTTAAATTTTCCTGGGAACTCGTTGATCAATAGTGATCT-CTTGATAAATGTCCCTTGCTACAATCCTTGTATGTGGTTAATGGAAGATTGAGAGACTTCCGCTGCTGAAAATGAAGTTATTTATGCTAATTGGGCAA</genome_strand>
        <mrna_strand>AAAGCTGCC-CAGGGGGGTTTACTCCTGACCGTGTTGCTGT.............................................................................................................................GTATTGTAAGTGTGAGATGCCCTACAACCCTGATGATCTCATGGTACAATGTGAAGGATGCAAAGACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCCCTCTTGTATGGGTATGTCCATTGATGAAGCAAAGACATTAGAGCATTTCTTGTGTTCTGACTGTTCCTCAGAAGATGAAACCAAACGTCCTTTGAACTCATTTCATGTTTCACCACCTGATGAAGCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGTCAAAGCGCAGGAAGAGATAAATAGCTGACCTTGATGCAGTATGAGGAG........................................................................................................................................................................................................................................................................................................................................................................GTGCCTGTTTCTATATATTGGATTACATGTGAAGCTGGATGTATGATGACAAGCCTGTAAAAGCTGATCAAGAATCATATTGATGAATAAGAACTTTGCCTCATCTTGAGTTGCAATATATCTGTGGTTAGGATCTCCTGATCAAGAATCATATTACAACAACTTACCCAGTGTAACCCCAGAAGTACGCATATCTTACCTCTTCCTTAAAAGGAAGAGAAGCCTGATCGAGAATCATATTACAACAACATATCCAGTGTAACCCCACAAGTACACATACCTTACCTCTTCCTTAAAAGGAAGAGAAGCCTGATCGAGAATCATATTACAACAACATACCCAGTGTGTAATCCCAGGAGTACACAAACCTTATCTCTTCCTTGAAAGGAAGAAAGCCCTGATCAAGAATCATATTTGTACTGTACTAATTCGCTTAAATTTTCCTGGGAACTCGTTGATCAATAGTGATCTCCTTAGTAAATGTCCCTTGCTACAATCCTTGTATGTGGTTAATGGAAGATTGAGAGACTTCCGCTGCTGAAAATGAAGTTATTTATGCTAATTGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319558" ref_strand="+" ref_description="SGN-U319558        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:1451057-1452871 REVERSE | Aliases: T7A14.7, T7A14_7(evalue: 8e-82, score=300) genbank/nr: gi|18390475|ref|NP_563727.1| expressed protein [Arabidopsis thaliana] gi|25373368|pir||F86184 hypothetical protein [imported] - Arabidopsis thaliana gi|4056427|gb|AAC98001.1| Contains similarity to gb|AJ006354 zinc finger protein (ZAC) from Homo sapiens. [Arabidopsis thaliana] gi|28416647|gb|AAO42854.1| At1g05060 [Arabidopsis thaliana](evalue: 6e-80, score=300)">
      <seq>ataatatttctgccttgtcgtctttctttttcatcatttttttttatatatataaagttttatcttgtgtgtaagtaagggaaatagaggtaaaaaaaaaatgtcatggtattatatataaccttgagagattcaaattcaaccaaaccaaaatccaagaagaagaagaatgagttttctagcaggaagagtagcaggaaaagaaggagcttttttctttgaagaatccaaacatgccgttacccgtttagcccaaaagatcaacaaaaatccaacttcttctccttccaattccacttctctaaatcaagaatcatcttcccctgatgttcttcctgagattcttcgacattctttaccttccaagattttccattctccttcctctgcagattcctcactctctaatacttccaaatgggttctccctactgatcccaatacgacaaattccgtatctccagatgctcttaatcctctcagagcttatgtttctcttccacaagtaacctttggacctaaaaggtggcagttgccagatacagaaaactctgtacaagcctcaacggcaaatgacttgcgtcgcgataaatacacaccgattaatcctgaaaaacttaaagctgcagctgtggggatgtctcaaattgcaaaggcatttgctattgccactgctcttgtcttaggtggttccgccttgacgtttggcttggcagcatccaagctagagttgcacaatcctgatgatatccggacgaaagggaaggacatggttcagccaagattggaaacattcaaagaacagctgaatcctttaaggatttgggctgaagagaagtcgaaaaaatggcatttggagaaaaaagaacacattaaagagaagcctttgataaaagagctctctaaaatattaggtgccaagtcgtcaaactaatgtcgatgcagtttattgcagatagctatgcattcatcagaatattttgttttcttctctctcactgtgtaattttgaataatatgatctgtcagcagttagtattttctatgtatcctgcagtactacattttctctgtaaattgctgtgttttctatgacgaataaaaaaacatttgatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="-" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="60106" stop="40025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59806" g_stop="59282" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59281" i_stop="41773" i_length="17509">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41772" g_stop="41651" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="647" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41650" i_stop="41260" i_length="391">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41259" g_stop="41168" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="739" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41167" i_stop="40779" i_length="389">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40778" g_stop="40692" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="826" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40691" i_stop="40619" i_length="73">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40618" g_stop="40318" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="827" r_stop="1127" r_length="301" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="-" ref_id="SGN-U319558" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1127</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59806" e_stop="59282"/>
          <exon e_start="41772" e_stop="41651"/>
          <exon e_start="41259" e_stop="41168"/>
          <exon e_start="40778" e_stop="40692"/>
          <exon e_start="40618" e_stop="40318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATATTTCTGCCTTGTCGTCTTTCTTTTTCATCATTTTTTTTTATATATATAAAGTTTTATCTTGTGTGTAAGTAAGGGAAATAGAGGTAAAAAAAAAATGTCATGGTATTATATATAACCTTGAGAGATTCAAATTCAACCAAACCAAAATCCAAGAAGAAGAAGAATGAGTTTTCTAGCAGGAAGAGTAGCAGGAAAAGAAGGAGCTTTTTTCTTTGAAGAATCCAAACATGCCGTTACCCGTTTAGCCCAAAAGATCAACAAAAATCCAACTTCTTCTCCTTCCAATTCCACTTCTCTAAATCAAGAATCATCTTCCCCTGATGTTCTTCCTGAGATTCTTCGACATTCTTTACCTTCCAAGATTTTCCATTCTCCTTCCTCTGCAGATTCCTCACTCTCTAATACTTCCAAATGGGTTCTCCCTACTGATCCCAATACGACAAATCCCGTATCTCCAGATGCTCTTAATCCTCTCAGAGCTCATGTTTCTCTTCCAAAAGTAACCTTTGGACCTAAAAGGTAATTTTACTGCTCTCTTTGATTGAAAGGGTACTGGTTTTCCCCCTTTTCTTTTCGTTGCTAAGCTGAAATATGATTGAATTTGGGGCTTGTTGGCTTCAACCTACTTTATGTATCCCAACTGAACAATGGGTTCTGCATTCTCGCCCTCCTTTCCACTCATTCAGTGATTGAAACAAATTGAATTTCTTCATGCGGGGTCTCACCAAATTTTTACTTTCCTGCCACTTTTCAAATGGCTCTCATAGCTGTCCCTTTCCAATTCCTTTATTCCACCTGTCAAAACTCTCCGCGCGACAAAATCTACGGCGAACATCTCCTTTCTTGCCCACATGTGTACACCACACCTACTCTCCCTCACGGTCGGCGCTAAGCTACCGTTCCCTCTCCCACCACACCATCACGTCTTTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATTCGTCCCCACTCACCCAAATGATTTTGTCCATTTTGTTTGAGACCTTCAAGGATCAACACGGCCCATTGAAACAGTTTTAAGGTTTTGAGAAGTTAACCAAATTCTGGGTTTAAAGAGGGATGGATTGGTTTCCCTTAAACACCGCTTTAAATTTTTATTTTTCAGCCAACTTCATTTTGGGCAAACCTCGGAGCCAGGTCCTTAGAAATCAACTTGTTCCATAAAGATGAACTTACATGTCCCAGCCTAACGATGCCGGAGATCAGCATTTTCGTTTGGAGCACTAAGACATGTTAAGTCATCTCCATGAGACATTCCCAAGTTGCCCACATACATATTTTTACTTCTGTGTGCAGTGAGAATTACTTTGTTTGTAGGTAAACTCACCACAGTGCATTTCTCAGAAGTAAACTTGACCTCATTTCCTTTATCACAGGTTTGTGACACACTTAGCAAGCTGTACTTCAACCCATCCACATGGTANACATTGTCAATTGAATCTNTAAGAGATCTTCCTACTTTGACAACTCCCAAAGTGTACCCCTTTTTGCCATCACCAAATGAGACACCTCCTCCTTGGAGGGTCTTGAGTGAGAGGAAATTCTTTACATCATCAGTCATATGCTTAGAGCAACCACTATCCATATACCAACATTGACTGCTGCTCCTCTCACTCACCTGCACCAAAAGTCACTTGTTAAGCTTGGGAACCCATTTCAGCTTGAGTTCCCAGTAGGCAGACAAAGGAGTGATTATATTGTACTTGGTCCAATATGGTAGATTTTGAAGCTTTCTAACAAAAGACATAGGAGCAGGAACAGATTTTTTCTTTGAAAATCTGTGAGTTGAGACAGGCTCTGTAGGACCAGGTCTCTCTTTTGGTACATTTTGTCTTTCAGCATAATTAGAGTACCTTTCACACGAGTTTCTCCAGCTAACACACTCATTCTTCAAATGTCCATTCTTACCACAATGAAGACACAGCAGATTGTCAGACACAAACACATACTTACTGTAAGGATTATAAGGAGGACTTATGTTCAGACTTCCTAGTCCTTTCTTATTGAAATTACTCTGATTTGTCGCATTTGACAGTAACTTTGAGGATTTGGTCCACTTAAGAGATTTTTCAAGTTCTTCCTTAAGTTTCACAATATCCTGTTCTAATTTGTTACTCTTTTCAAGTGACAGACTAAGATTTATCTCAGAGTTTTTCAATTTTTCTTGAATTTCAGCTTGCAGACTATTTGAATTTCCATTCAGCTTTTCAGCTTCTTCAGTAATCTGATTCAACTGGTTCTTAAGTTCAGAGTTATTTGACTCTAGAGACACCATTCTTGACATTTTCTCTTCAAGTTTAACTTTGTTTTCAGTTAAACTTTCAAGTTCAACATTCATGGTGTCTCTTTCAGATGTTAACTCTATTACAAAATCGAGCATGACTTTTGCCAAAGTTCTCAATTTTTTAAGAGAATATTTATCCAAATCATTTTTCATGTCAAGAAGAGTTACCTGATTTTCCTCTTCTTCATTTTCTGTGTGATCCATGAGAGCAAACATTTCATTGAAGACAGTTTCCTCCTCATGCACAGCAACCATAGACACATCTTTTGGCTCATCAGGATCTTCTGAATCACTTGAAGAACCCCCTCCCCCTAAGCAGCAAGAGCCCTTTTAACAACCATATCAGCAACAGCTTTACGATCTCTGTTACCAGGTACCAGGTCCCTTCTATTTTCTTTGTCACCCCTGTGTTTTTGATGTTCCTTGTTTTCATTCTTGAGCAAAGGACACTCTCTGATGAAGTGCCCAGATTTTCCACACTTGTAGCAAGTATCACCTTGAACAGCATTTCGAGTCCCATTTGTTCCTCTTTTATAAATTTGGTTTTTCCTCACAATTTTTTGAAATCTACTGATGAGATATGCCATATCATCATCATCACTTGAATCTTCATCTAATTTATACTTTAGCATCAATGACTTGTCCTTCTTGGCTTCCTTCTTTGACAAATCATAGTTTCGATTCATCTCATGTGTTTTCAGATTACCAATCAAAGCATCCATAGTCAGCACTTTCAAGTCCTTGGCTTCTGTAATGGCATCAACTTTGCTCTCCCAAGACTTTGGAAGAATCCGAAGCACTTTCCTGACTTGTTTGGTCATGCTTATAGGTTCACTCAGACTTCACAACTTATTTGTAATAGAAGACAACTTGGTGAACATGTCATGTATTGTTTCTCCTTCCTTCACTTTGAAGTTCTCATATCGTGAGGTAAGCATGTCAATCTTACATTCTTTGACTTGTTCAGTTCCTTTATGTGCAATCTTCAAGAAATCCCAAATTTCTTTAGCAGACTCACAGGCTGACACTTTGTTGTACTCATCAGGTCCTATCCCACAGACCAGAAGAGTTTTAGCTTTGAAACCCTTTTCAATCTTTTTCCTGTCAGCATCATCATATTTCTGCCTAGGCTTTGGAACAGTAATGGTCTTTTCTCCATCCTTTTCTTCCATCATTGAAACAAATGATCCATCTAGTACAATATCCCATAACTCGTTGTCTTCAGCCATGAGGTAGTCATGCATTCTAACTTTCCACCAACTGTAGAAATGTCCATTGAAACGAGGAGGTCTGTGTGATGACTGACCTTCTTCGAGGTTAAGTGGAGCTGTCATTCTAGAGCAATATCACTTCCTTGGTGTTAACCAAATAGATAGTGTCTGCTCTGATACCACTTGATAGAATGTATGCCTTTACTTAACAATAATGGACCAGGTCCCTTACTACACTAATGAATAAAATAGAAAGTTAAATGCAGTAAAATCAACACAATGATTTTACGTTGAAACCTCCTTACTTAAGGGAGTAAAACCACAACCTGTCTCACAGGATTTTCATTCGTTTTCACTAATCTTCAAAAGCAAAAGCGAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAATCCTCTATTGCTTAACATGCCTAAGTAGAAAAACAATCTACCCACTTAGCTATCCCACCTGGACAACCTAGACTTCTACCACAACACACCAATTCCTTTATAGATTCAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTTCTAAACAACTAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTTGGAATAATTCTATTTTTGCTTTGTATTAGCTTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTAAACAAAAATGTTTAGGAAAGTGTCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGACTGGAAAAGTCACACTTTCTGACGCCATCGGAAAGTGTGCACCTACTTTCTGTACCGTCTCCAGCTGGCAGTCGACTGGCTCGTCATTATGAGAGCCTGGTACCTCTACTAGGTCCCTGGGTTTGTTTCATCTGCAATATTTCAAACAAGACACCTGCAATACTCAAGTAGAAAACCCGGTACCTTTATGAGGTCCCTAAGTCTGTCAAATCATCAAAACTACAAATAACATATGACACATTATTAATTTAATGTATCTCTGACTTATAATACATGCTACTTATTTAGGATGATGAATCAGATCAAGGCCCTCGAGATCTTAATGAAGCAACAATGAATGAATATACATAAATAGTAATATCATGTATAATGTATCTTCTGATAAAATGCAATCTTACGCAAACAAAATAAGATACATAAATAGTGATACATCATGGACTAATTTGTTAAGCATGATACATAAATTCAAATTTATACTAAATATATCTGATACATAAAAATTACCACATAGACCTGTATCTGTCATAGTTATGTATTTTTTCAGTTTTTTTGTATGTTGTATCAATGTATAGTGGATACATTAAAAATCCAGGCTCTTGTTTTTTCACCTCAAAAATGTATTTGATTTACAACTTTTTTCTCAATTCACCGATTTATAATTCAGCGGGAATGGACTAATTAAAGATTCACAAAATTTATATTTTTATCAACAACAATTTCATCACTTTTGTATCGTTCATACTTCACCTCACTTTAACAGATTTCAGAATGTCTCGACAAGATCAACAAGTTTATGTTGTATTAGTACAATTTGTTGACAAGATTGATTTCAAAATTGAATTTTTGAAAGAGAATTTTAAAGTTTGAATAATGCTAGTGTGCTATAATTTATCCATTAATGCATTGTTCTAAAATCCAACAATAATGTATCTATCTAAAATCAAATAGTAATGTATCGATATCTTGACCAACAACACTTTTATCATTTTTGTATTGTTCATAACTCACCTAACTTTCCATATTTTGAAATGTCTTGACAAGATCGACGAGTTCATATTGTGTTAGTACAATTTGTCGATAAATTTAATTTAAAAATTGAGAGTTTTTGGAAAGAATGGGAAGAAGCATTTTAAACTTTGAATAATGCTAGTCTGTAACAATTTTTCAATTGATGTATCTATTTAAAATCAAATAGTAATATATCGATTTAAAATCAAACACCTTATGAGCAATCTTTACTACTTTAATGTATCATGTAGAATTACAATACTTATCAATATACTAAAATATATTTAAAATATTATATATCATAAATAATATATCCATCTTGAGATCACAAATTAAAGAATCAGATTACAGAATACAATACATGTAATTTAATATATTTCATTATCGAATCTTTTTACCCTAAAGTTAAAGTTATAAATAGTAACGTATCACGCACAATTTTATGGGCATGATACATAACTACATAAAAGTTGATACATTTAAATATATTCAGTTGCTATATCAATGTTGTGTTCTCTATTTTGCAGAATAAGAGAGATTTCGAATTTGAAATTTAGTATTCATGTATATGGTCAATGTTGATAGAGGAGGAAAGCGTCATAAAGGCAGCAGCGATGCGAAGAGAAATTTTGAGAGTCATTGTCGATCATGCACTAAATTCAGATGATGAAACAACCTGTAAACATTCGAAAAAACAGTCAGCAAATATTCTGAAGCATTCATGCTTAAGCCACAATCATTCATAAAGTACATTAACACATAGTTATACATTTTTTTACCATATTAATGCATCTACCAGATATATTTGAAATATATAACAGTAATATGATTCACAATATCTCAACGAATGATATACATTGATGTATCATTCGTAATAATGATTGTTATAACTACTTGGCACATCTAAACTATTACATTGGTTGTATGTATCATATTCACATCACTAGTCTGATACACGTTATAGAAATTAGTGTTACTCTCACATAGAGATACAAAATGTATCTGATACATGTTAATTCTTACTTTTTGAAGTATGTATCACATACAATTAATTACATTTTATACTGTTATTTCATGCTTAACAAAAATATACACATTCTCTCAAAATGATTTATGGTGTACCACCAAAAAATCTGTAGAAATACTAGGTATAGAATTAATTTTATACTATTGACAATTTACAACTAATATGTTATGAATATCTTATCAATATCATATAATCATCAAAAGCAAAAAATAATTATCAACATAATACATCTGCTAATAATAACAATAGCAATGTATCATACAAGATTAGAGATAGAGATTAAAAAAAAAATATCATACCTTTTTCTATTAGATACCTTTATCAAAGTTATGTGTCTCTCCACCAATCTTCTCCGTTGTATCAATACATAGAGGATACATTGCAAGTCCAGGCTCGTCTTTTTCACCATCAAATGAAGTTTTACACCCTTATTGTTTTTAGTTTTCAATGGAGATGAGTTATTACTTGTATCTAATCTCTAAGATTTACCTAGGCTCATCGATTTCCAAGTTGACTGAAATGGCGACTTTGAGATTGACAATTTCATCCTTTTGTAACCTTCATAACTCATCTTGCTTACTAAATTTTTGATTCTCTCAACAAAATCAATATAGATTTATATTGTGTCAGCCAATATTGCCGAGTAATTTGAATTTTTCACGAATTGGACTGCAATGGCGACTTGATGGAGATGATGAAAATTTGAATTTTGAAAGACATGAATCTGTTGCGAATTGGGATGGATTGATAATAATCACTTATGCTTGAATCGTGGAATCTAGAATCAATTCTAGGTTAATTTTCCTAATAAAGCGCAACAATCAACTGTTTTCCTTGAAAGGTGCAATTGCCAGTTGTTACAATGCATCACATTTAATGTATCTACATGAAACTTATGCATCCGTATGACTTCTATTTCAAGGGTTTTTTTTTTAAAATAGAAAAAAATAGGGATAAGATGTAATTTAGATATTACAATATAGAATTTATGTAAGTTATACTTATTTTTACTTGTCTACTATTCAAAATAGATTTTTACTTTCACTTGTCACTTTTAACATATCAGGATATTTCTTTATGTTTATGCATAGTACTAATTATCTATTCTCCAAATTATTTTTAAGACATAATACTAAACTTCAATTATAAAAATAGTATAATAAAATAGTTATATCCATCATTATTTTCTTAACCGATATTTCAATTTCAAATATAACAAATAAAAATGAGTTAAAGGAATTATTAGACATTTTCCATTTTGTGAAAAGTTAGAACGGAAATTTCAAATTAGAGGACTTTGAAAAGTAGTCATTTTAGGAGACAAATCAATAAATGAAATAAATAAATAAATACAAAGGCTTGACAAATGGAGTAAGTTTAAAGACTTATGCTTGATCATTTTCAACTTTAATTTCTAAATGTTCTTAAAATATTATTTACTAAAGTTATGTGGACCAACTCTTTGATTTGGAGAAATGAAAACAAAAGTAAATATGCCATTCAAGATATTTAGAGGGTGTATTTTGTAAATTACATGAACAGTGCCTCAGTAAAAAAAAATACAAAAAAGGGAAAATAAGCACCTTTCGTAAATTACTTTAATTGTTTGCGTGAGGTATTTAATTAAATACATCAAACTCAATCGGCACAAACTCGAGTTTTTATAACTTTTTAAGACTAACGTAAATAGTTAAGAAAGCTCATGATATATCTTAATTGATTAATTTATTTACGTAATGAACGTTTGACTGTATGCACAAAAGTTTTTCTAAAAATTTAAGCTGAAAGTATCTAATAGAAACATTTATTAGGTGTATTGAGGTGCTGAATTGACTGACAAATTTTTATTTTATTTTAAAAGGAATTAAGATCTCTTGACCAATTAAAAAAAATGAACAGAAAAAATAATATCTTCAAAGTAATTCTTAGGTATAAAGCTAAAAATCTCTACAATTTGCAAATGGTTTAAAAGATCAATTCTGTCTATATTGGATTCTTTTACAAAACGTTCTTTTACATGCCAGAATTGTTATCCAAATGAGATAAAAAAGACGAATATAAAGAACAAAATTTCATTTTGTCTAACAAATTAAACTTCTCAAGCCAACATTCACATGTCATGGAGTAGAAAAAGGATTAATAGAAGTTGTTTAATATGTTATAAAGTAGATTTTGAGTGAGTTAATTATACCCTTTTTCTTGTTTGTTTTTTGTCATTATCTCTTTGCTTCTTTCGAAGTCATAGGATACTGTTTCTCTTGTAATAGTTATAACTATGACATAAGAAAAAAAAAAGTTCTAATTATCATAATTTCATAAACTTCTTATTCATTTTTATTCAACGATGGAAGGAGAGAAAAGCCAACTAACATAATCACATGAGGCAAAAATCAATTTTCCTCAAATGAAATATCAGAAATTAAAGTAGTAAAATTTGACTTTGGTGGAGTTATCAAGGGCTTCGATTCAAATTTCTATCAATCCAATGGTTTAGAATTGCAATTATTAAACAATATAATGACCGCGGTATAATTTAAAAAAAAAACATTCATGTTGATGTTTTTTTTTAATCGGTGTCCGCAGTGATATTTAGAGTTCGACTAGATCTAAAATCATGTCAAAAAGAATAAAACACTTTTTAACAAAGATAATTTCATAATTATGACAACTCAAAATCGATATTTCTGAATTATAATCAAGAATAAAAGAGTATTTAGTAATTATTACGATCCTATTAGTTATGCTGATGCTTTTATTACCCTCCGAGTGTCTGATCACATAATTCCTTCATTGTTTTCCACAACTAATAAAATCAAAATGGAAAGTAATGTACTAAAAATAGTTTATTTCCTTTTTATTTTATTAATCGATTTTTATTTTTATTATTATTCTATCAGGATATTCTCACAACATAAACGGGCCCCTTTAGAGGAATCTCTCCATATTAAGAAATTTTTTATCATATATCTAGGGTTTGAATGCGAGATCTATGATTATGAGGATAAACAATTCTCATTACTGCATTATATTATTCAATGTTTTAAAAATTCAAAAAATAATTCATGACTCAAGTTTATTGGACATGAATGAACCCGGACAGACATACCCGCCGCTTCTGCTTTCTGCCATATGGGTTCAGTTTCATAATATTATTACCGAACTCCATTTATTGAATTTGATCTAGCTATATTACAAGCTTCTGTTTTTACGATCAACATCTAATTATAGTAGACAACCTACTTAATTTCTGATTTATCATTACTATTAACTATAATCATTTTTCATAACCTAAAAATTCGTTCTATTTAACAATACCATAATACAAATTTTATTTAGAGTTATACTAGTCAAATATTATGAAATAGAGGAGTAGGTGCAGCAGTATAATATCTAGAATGTAAAAAACAATACTACTATATACCCATTCAATCAGTCATTATTTTACTATTTTCAATCCAACTTCATAAAAAAAAAAACCATCTAAAAATCCCCAAAATTATCAAATTCTTGTAAGTACCAAAATTTTTCCATGTTTGAATCCAACCCAAAAAACTTTATGTTGAACTTATCCCTTTTCTTTATACTAATTTACTTATCCTCTGCTCCATTACCAGTGAACTCTCAGTGCAACAGAGGTTGCGATTTAGCTTTAGCTTCATTCTACGTATGGCGAGGAACAGATCTCACTTACATCGCAAATTTATTCAATATCGAAACTAGACAAGAAATTATGGATTACAACACAAGAAATTCAATCCCAAATCTAGACAGTGTAATCGCCGGAACTAGAATTAACATACCTTTTCGCTGTGATTGCTTGGAGGACGGCGATTTTTTAGGGCATGATTTTCAATATGAGGTTAATTCAGGGGATACGTATGGTAGAATTGTGTCGAATTACTCTGATTTGACGAGTATTGATATGTTGAGGAGGTTTAATAGTAGATACCCGGAGAATAATATTCCGACTGGTGTGAATTTGAGTGTTGTAGTGAATTGTTCTTGTGGAGATAGAGATGTATCTGAAGATTTTGGGCTTTTTGTAACGTATCCTTTGAGATCGGAGGAGAATTTGACGTATGTGACGGCGACAATGAATGTGAGCGCTGAGTTAATACGAAGGTATAATTCAGATATGGATGCAAAATTCCGTGCCGGAGAAGGGATCATTTATATTCCGGGAAGAGGTTAGTGTTCATGCTCTTTTGTTATGCGTTTGCTTTATTTTCTGGATATAAATGTGCTTTTTAACTTTTAGTTGTATCGTTATATTCGTATTATTTTAAAAATGTATAATTAAATATTAAAATTTATATAAAATTAAATAAATAATTATGCTAATTTCAAGTGATATAATATGCATCATACACAAACTTATCATTTTAGATGTAGATTATTCGCACTGGTGAGGGCTTATGGTCAATTATAGGTGCTAAACAAGACTTTAGAGACCATGGTAGGTGCTATTGTTATGATAGTCAACAAGATTGGATGAGTTTTCAAAGGCGGAATAAGCATCAGGACGAGTAGTGGTAGAATTAGAATTTTTAATAACGATGTTTAAAATTTAAACAAAGTAAATATATAAATTAATTGAAGAGATTCAATATTTATTATATATACATAAAAAATAATTTTAGTCATATATAAATAATAAGATTTTATATCAAAAGAGGTTCATGAAAGGAGTTCGAGCGAACCCTTGACATACTGGTGGTTCCAAATTTGAGGACGAGGCATAACAAAAACCCACTGAGGCATTGTGGGGTGGGGGGAGAGTGAATAGTAATGGTAATGGTGATGATAGTAAAAGACTTATAAGGCATAAATCTTGATATTTGGGGTGTTCATCTAAGCTTGGGCGGCGTAAATTTCTTATGGGGCGCAAGTATAGGATGTCAAATTGATAGATTGGGTTGAAATGAGAGATATTAAAATGGAATTTAGAAATCATGTTGGGTTATAATCTCTCCAAATTTATTTTGGATTTAAATGACTTAGGCTTAAATGTGCTAAAAACGAGTTCGGTCATGACTTTCTCAATTTGATCCGCTTAATCTTAATAATTTTAGAAAAATTAATTAAATACACAATTTTATTTTTGAAAAAACTACATAAATTGGTCATAAATCAAAAATAATTATAAGGTCATACTCAAATTCAAAGTAATTCTTGAAATATTCATTCTCTCATAAATAATTACAACTCATATTTTCATTCATTAAAAATTAAGATTGATAATTTTTACTTAACTGAATCATATATTGTATTGATATCATTAGTACTGATAATTTGGCTTAACTGATTTTGAATTGATATCATTAGACATTAAGATTTAAAATCATTTTTCAAACGAATTAGCTAAAAAAAATTTCTTCAAATGCACTTATTTGAAAAGCTATTTTAAAAAAAGTTTTAATAGCAATGCCAAACAAACTCAAATTGAAATAAGTACCAGGAAATCTAAGAAAAACATTTTAATATATATTTTTAAATTTTTTTATCTCCTTTTATCTCATTCTCCTCACGTTTCTAGTTCGGTCGACCTACTCAAAGCTTGTTTTTTATTTTCCTAATTTTTCTCTACACAATATTCAATTGAAATGGTTGGAGTTGTAGCATACAAGCTCTTTTTGCCTAAAATTTAGATTTAGAATCCATTGTTATTCATATTTCTTTAATATGATCCTAGTTATCTATAAAAGGGAAAAAACAAATATATTTGAAGTGACGTAAATAAAATATATATACTCTTTGTTATATTTTTGAGATATTGATGACTCTATCGTTTAAAAAGAACTAGAGCATGTATATTCTTCACTTTAACAAAAGACTATATAGGAACACGTGACACAATCTTATTTGTCGATCCGGTATTTAATAAATGTCGGACCAATGAATAAGATTATGATACATACATGTCTATTAGTATAAAGGCAATATATGCGAGTCCGGAGCCAAAGTAGAAAAAAAATTGTCAAAAATTTTAAAAGGGCATATCAAAAAAAAATTTAACCAAAAGGACAAAATCATTTTTTAGAATGATTTTATTTTTTAATATCGCTACGTGCAGCATTTTAAAAAGAAAAAAAGCTAAATTCTTTTTACACTATCTACTTGTGCAATTTTTTGTACAACAATACTTCACACCATTGAAATTACTTGACATCAATTTTTTAAACCTTCTTTTTTTGTTGTTGGTTCAAAATGAAATTTCAAAGATTAAAAAAAAAGTCAAAAACTACAGTAATACTACTTCGTTGAATTTGTCTTTTGTCAAATCAGAATCACCAAGGGCTTCGATTTAATTTACTTTCGATCTAACGGTTGAGAATTGCCACCATTTAAAAGGCCGCCATGAGAGACCAGAAGAAGATTTCAAAAGCTGTAAGAACACGGCTTTCCTTAATTCCCTGACAAGTGCGCTGCCGACACAATTCTATTTCATTGTTTTCCCCAAAGTATTAAATTATCTGAACAATAATCATTCATTATTTTACTAATTTTCAATCCAACTTTATCAATAACCCACTCAGTCAACGCTTACTCCTCCAAAACCCAGCTCAAATTTCCCAGAAAAATTCGTTCTTGCATCAATTTCCTTCACACCCATTTCATAATTTCCAGAAAAATACATTTTTGTATCAATTTCATAATACCCATTTCAGGAAATCCATAAAAATACGTTCTTGAATCAATTTCCCACATACCCATTTCAGAAATTTTCATTCTTTATTCATGAAACATGTTTGAATCCAGGCCAAGAAGTGTTTTGAGCTTAGGGGTTTTCGTTATACTAGTTTACTTATCCTCTGTTCCATTACCAGTTAACTCCCAATGTAACAGAGGCTGCGATTTAGCTTTAGCTTCATTCTATGTCTGGCGAGGTTCAAATCTCACTTTAATCTCAGAGATGTTCTCCACCAGTATAGCAGATATCGTTTCTTACAACAACAGGGACAATATCCCTAATCAAGATAGTGTAATCGCCGGGACAAGAATTAACATACCTTTCCGTTGTGATTGCTTGAACGACGGGGAGGTATTGGGTCATGCTTTCCCGTATAGGGTTAAATCCGGTGATACTTATGATCTTGTGGCGAGGAACTACTCTGATTTGACGACTGCACAGTGGATGATGAAGTTTAATAGTTATCCTGAGAATAATATTCCGAATACTGTGAATTTAAGTGTTGTAGTGAATTGTTCTTGTGGGAATAGTGACGTTTCGAAGGATTTTGGGTTGTTTGTGACGTACCCTGTGCGGGCGGAGGATAACTTGACGTCAGTGGCTTCAGCAGCCAATGTGAGTGAAGATATAATCAGAAGGTATAATCCCGCGGCCGTGTCCATACTAGATATAGGGCAAGGAATCATCTATATACCGGGAAGAGGTTGGTGTTCGTGATCTTTATGTGTTTGTTTTATTTCCTATTACAAGTTTTATGTGTTTGCGTTAGAACTTTATGAGGTGGTTTGGTAGCTGGTTAGAGTTATGCAGATATTAGTAATGCAGGAATTAGTTATGAGTGAATCTATATATTATTTTATGTAAATATTAATTATGTAGGGATTAGTTATACAAATCTTCTTATCTAGCTACCAAACGACCCCTGAGGTTGTAGTCCTAGTACTTCTTCTTTTGGTTCATATTTTAGTCTCGCAGGAACAGGGGAAAAATGCTCTCTTTTTCAATGATAAGGGAACCCCAACCACTCGTATGCAATAGCTCACAAACTGCACAGGAGAGCAAACTGCACTAGGCAAGTCCCATGTGACGAGCTCAGCCTAGAAGGCAAGTAGGCACTAAAAAAAGGTTAGGAAGGAAGTAGGAATTAATTTAGGAAGCAAAATGTTTTGTTTAAGGGTGACACTGGATTGAAGTTTATTGTTTACTATAAACTGGAGTTTGTAGTTTGAATGGATAGAATAAATGAGGATTGAATCATCAAGGATGTGTTTTGATGTGTCTAAATGCGCAACAGGAAATTGAAGCAGGGACACAGCACTATACATGGAACATTAATGCAAAATTTGTTGATGATACCTGTTTTCTTTTTTCTCTTTTTCGGCGTGATGCAGAGTGTAACGCTGGACCAATTGAACTTTAGCATTGTCATCTGTCTTTGTACTAAAGTTGTTCGTACAATGGATAAAGGGGTTCGAAGTACATGATTAACTCTGGTGGTGCTGAACTGCTCATATCGGGAAAATGTGACAATTTTCAAGCATGATAATCTTGTGTGAAATTCCTATGATTTACATAGTGCTTTTGATCAGCAAAATTCTAGCTCTACCAACTAAGTTTATCGCTGGGCTCCGTAATGGCAACGCAAGGCACAAGCAGTATTCACAAAAAGAAGAAGCACAACTGAGTGACTGTTCTATGTTGCTTGACTTCTTTGAGCTCTTCAATCTGCATCTTGGATCATTTCTTCAAATTGCCGACCTGCCTCGATTTCGGTCTTGAAAAAACATTTTTATATATACCACATGGAATGCAAATGTGAAGATTAAGAAATACATTTACCCTCAAAGAGAATTAGATGAAATAAATGTAGAATAATCTTATAAAAAAAAAAAGATCTTTAGTTTTGTTAGTGATGGTAAAATATCTAGAGATATACCCTTTTGGAAGCACAAACAAGCCCTTTCAAGTATTTTTCAGTGTCACTCTGTTTTCTGAAGATCAAACAGCAGTACTGAACAAGAAGAATCACTTAAAGATCAGAGTTATGCTTTTGAGGATTTAATGGAATGAAAGCTATCTTCTTATAGGTAAAAAAAAGAAAAAAGATATAAGGGCTTGCAAGATTCTGTTTATTCTTGGTTCTTATTTTGGTACTTGGGAGGAGCAGGAGTACAGTGCGGGCATGTTGCTTGTTAGTCTTTCCTAGAGCAAACTCAAAATGATATACAACAAATGCCAGGATATTGTTGTGTCGTTTATCGAACTAAAACTACCTGACTCAAATCTATGTCATGTACTAATGCATTTCTGCTAAGACTCTGATATGCTAGTGTGTCTTTCTGTTTCTCATCATCTTAATGTCAGCCAACAGGCTCCCTCTTTCAATCTATTTTCTATTAGAACAGTTTGTGATAACTCTGTTTTGTTATTTGTGCTTGGTAGAAGTCATAGCTTGATGGTTAACAAATGTCCTAAAAGAGCTTGCTTCTGACTTTGATATTGTCAACACCATATTTTATTTAATCTTCCCTCTTTAATCCATTCCAATTCCTTGATCTGTTTCATATAATGTTAAATTTCTCGGTACCAGAAGATGAGTGAAGATCAAATTAAAAGAGACTGATACACTCCAATTTACTTTAGCTTTGATACAACATCTTTTTCACATATCCTTTTAATCACACACTTTTCTTATTAATGAATTAATATCTTTTACAGCTGAGCAGCTTCTGTATATGATGCCTTTGATGTTTTTCTTTTTCAATATCTGCATACTCTAAGTTTGCCAACTAAATTGGAGAGCGGTAACACATTTAGTACAAATACTTTGTCAGTTTTAGTGCTTGTGCCTACTACAGTTCTTTTCTTTTTCGCGTGTTCTTAATGTATAAACAGTGTTTGAACCATCATTTCTTTCATTATGCAGATAGAAATGGGAACTTTCCACCGCTGCCAACAAGGTAACTCATTAATATTTGATGTTAAATCTGACCATCTTGTTATCTATTGATCTTCCATTAACTAGCACATTGCTGACATTTATCATTTGTATTGTTTCTCCCTCTAATTTGCAGCACAGATGGTTTGCATCTTTCCTCGTCTTCAGTGTTGGCTTATTTGTTATCCGTTTTCAGACCATTCATGATGATAAAGGAAGTCCTTTATGCTATCTACACTTACCATCATTGCATCCTTCTTAACAATTAGGTTTGTCTGGTGGCGCTAAAGCTGGGATATCTATAGGAGCAATAGGAGTAGTCTTGCTGTTGGCTGGTTTGGTTTATGTAGGATGTTATAGGAACAAAACACGAAAGATTTCGCTGCTCAGATCGGAAGACCACCTCCATCAGTATGGTCATGGTAGGTGTTGATCCCTGTTCTTTAGTTCTTTAAGTTTATAACATTCATTTATTTGGCGTACGACATTTCTTAAGGTGCTTATACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGAATGAGATAGAGGTAGTGAAGGTATGGGTGGAGTAGAAAGGGAGGAGTGTGAGGAGAAAAAGTGAGAAGGTGAAGGATAGAATGGGTATAGTATTGGTTAAGAAGATGGGAAGAAGAGAGATAGAGGGGAGGGGAGGGAGAAGGAAGAGAGATATAGAGAGTGGTAGTAGTTATGACATAGAAGTTAAGAGTAAGAGAGAAAGAGGAAAGTATATTTGGTGAAGATGAGTGGAGAGAAAGTGAGCAAAAGTAAATGAGTGGGGAGAGATAGTTAAGAGATGAGGAGGGGGATGAGAGAAATAAGTGTGATAGGGGATGAGGAGAGTGGGAGAAGAAAAGGGAAAAGAAGAGAAGAAGAAGAGGAGAGAGGTTAGAAAAGGTAGTAAGAGAAGAGAGAGAGAGTAATAAAAGAGAAGGAGGATGAAGGGGAGAAGAGAAAGGGGACAAGAGGAGAGAGATGAGAAGGGAAGAAGGAGAGTATGTAGTGGTGGTGAGAATGGAAAAGAGAAAGTGAGGAAGAGAGGGGAAAAAAGGAGAGATTAAGAGGATAATGTTAAGGGAAGTAATAGGAAAATAAAAGAAGGAGTGAGAAGAAGGAAGAAGGAGAATGGGGAGGGCAGGAGAAAGGGATGAGAAGGGGTGAAAGAAAAAGGTAAAGAGAGGGGGGGAAGAGGAGAGGGAAGTAGGAGAATGGAGATAGGGAGGTAAGTGAAGGAGAAGATAGAAATATAGGGTGAGTTTAGGAAAAGAAGAGTAATGAGGTGAGAGTAAGTGATTATGAAATGAAGAAGTGAGTAATGGAGATGTGGTATTGTGAGTAGATAAGTAGGTGATTGGAAGAAGATTGAATTTGTGATGGTGGGTGTAGCAAAATTGTAATTTTTGAACATATTCAAATGGTGTAATAGGTTGTCTTTTTCATTTCTTATCTAAACGTTTCATATTCTTTGGAGTGAAAGAATTGATGGGAGATTACTTAGTTTGGCGAATTTGTGATTACAGATTGAAATTTTGTATGTTGGGGTTAAGTTTTGATGCACTTACAGAAAATGAAAAAGGGATTTATTAACATGACCAGTTTTTAAAATGGTTTGATTATCTTCTGTAATTTTGGTGAGGTGTTACCCTGGATATGTGACTTAAGACTATTTGACAATCAAGTGTGAGTATGGACTATGGTACTGATTTAGCATGGTGTAAGTGAAGGTTTCATCTGTATTAGGCAATGTCAACTCTCTGTGTTGGATAACATTGTGGGATTGTAACTAATATGAAAATGTGCTTTTAATTGCTTCAGCATTCAATAGTTAGTTAGGGTGTATGAAGTAAACCTCTCTATCTTCTTTGATTATATACATCTTCTTTTGACGATCACATTGGTAATATCTTCTCCAGGTGGCAGTTGCCAGATACAGAAAACTCTGTACAAGCCTCAACGGCAAATGACTTGCGTCGCGATAAATACACACCGATTAATCCTGAAAAACTTAAAGCTGCAGCTGTGGGGATGTCTCAAAGTAAGCCAAAACCTTTACATGTTTGGTTCCATTTTGTTAGAATTCCTCTCCCCCAAAACCAAATGTAATTGCTTTTGGATTAGAAAACTCATGTAGAGTTTTCAGAAATCAAATGAAAATATTTTACAGAATTATAAAAATATATCGATAATTAATGTTCTCTCAAGAAATTCGACAAACATACTATAAGTTTTATGTTCTATAGGCTGAGGTATAGTCATTTTAAGCCATACCTACCGTATTATAAAATTCTTGATCTGGAAGTATTTCCAGAAAGTAGTAAATCTGAGAAATTTTACATTCAACACGATATACCTCGGAAACCACCCAAATATGATATTAAGTGATATTGCTTTTGGATCCTTATTGTTTATAGTTCTGTTCAATGTAGTTGCAAAGGCATTTGCTATTGCCACTGCTCTTGTCTTAGGTGGTTCCGCCTTGACGTTTGGCTTGGCAGCATCCAAGCTAGAGTTGCACAATGTAAGCATAATCTTTCTTTCTCTTTTGATTTACCTTATGGATGTTTGAATCTCTACTGCTAAACTTAATTTCCGCTAAACATTACAATGAGGTAAGATCACATATGGGAGTAACACTCAATCCTTTGCTTTTGAGATGGAAGAGTACCTGATATCAATGGAGGATGGTGATATTATGATTTTTTTTTTTGGTTAGTGGGTTGACACGCAAGAAGAGGAATTTTGACGTCTACATAACTACATTTCTGCTTTAGTCGTGTTCAGTTGAGGAATTTGTCTGTTTGATTTTAGTTTATAGACAGTTTTAGTTAGATAAAGAGTGTTGCTTAGTTATCCACTGTTCTATGCTTCTGATTTATGTAATATGTGGATGATGCTGATGTTGCGCAGCCTGATGATATCCGGACGAAAGGGAAGGACATGGTTCAGCCAAGATTGGAAACATTCAAAGAACAGCTGAATCCTTTAAGGATTTGGGTAAGCAAATGTTCAACTATTCTTCAATATTTGCTTCTATCGTTATCTAATGAATGGTAGCCTCTATTCTCAGGCTGAAGAGAAGTCGAAAAAATGGCATTTGGAGAAAAAAGAACACATTAAAGAGAAGCCTTTGATAAAAGAGCTCTCTAAAATATTAGGTGCCAAGTCGTCAAACTAATGTCGATGCAGTTTATTGCAGATAGCTATGCATTCATCAGAATATTTTGTTTTCTTCTCTCTCACTGTGTAATTTTGAATAATATGATCTGTCAGCAGTTAGTATTTTCTATGTATCCTGCAGTACTACATTTTCTCTGTAAATTGCTGTGTTTTCTATGACGAATAAAAAAACATTTGATGAACATGTAACT</genome_strand>
        <mrna_strand>ATAATATTTCTGCCTTGTCGTCTTTCTTTTTCATCATTTTTTTTTATATATATAAAGTTTTATCTTGTGTGTAAGTAAGGGAAATAGAGGTAAAAAAAAAATGTCATGGTATTATATATAACCTTGAGAGATTCAAATTCAACCAAACCAAAATCCAAGAAGAAGAAGAATGAGTTTTCTAGCAGGAAGAGTAGCAGGAAAAGAAGGAGCTTTTTTCTTTGAAGAATCCAAACATGCCGTTACCCGTTTAGCCCAAAAGATCAACAAAAATCCAACTTCTTCTCCTTCCAATTCCACTTCTCTAAATCAAGAATCATCTTCCCCTGATGTTCTTCCTGAGATTCTTCGACATTCTTTACCTTCCAAGATTTTCCATTCTCCTTCCTCTGCAGATTCCTCACTCTCTAATACTTCCAAATGGGTTCTCCCTACTGATCCCAATACGACAAATTCCGTATCTCCAGATGCTCTTAATCCTCTCAGAGCTTATGTTTCTCTTCCACAAGTAACCTTTGGACCTAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335734" ref_strand="-" ref_description="SGN-U335734        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr3:7615416-7618588 REVERSE | Aliases: MIL23.20(evalue: 2e-28, score=122) genbank/nr: LysM(evalue: 3e-29, score=132)">
      <seq>gaataatattccgaatactgtgaatttaagtgttgtagtgaattgttcttgtgggaatagtgacgtttcgaaggattttgggttgtttgtgacgtaccctgtgcgggcggaggataacttgacgtcagtggcttcagcagccaatgtgagtgaagatataatcagaaggtataatcccgcggccgtgtccatactagatatagggcaaggaatcatctatataccgggaagagagtgtaacgctggaccaattgaactttagcattgtcatctgtctttgtactaaagttgttcgtacaatggataaaggggttcgaagtacatgattaactctggtggtgctgaactgctcatatcgggaaaatgtgacaattttcaagcatgataatcttgtgtgaaattcctatgatttacatagtgcttttgatcagcaaaattctagctctaccaactaagtttatcgctgggctccgtaatggcaacgcaaggcacaagcagtattcacaaaaagaagaagcacaactgagtgactgttctatgttgcttgacttctttgagctcttcaatctgcatcttggatcatttcttcaaattgccgacctgcctcgatttcggtcttgaaaaaacatttttatatataccacatggaatgcaaatgtgaagattaagaaatacatttaccctcaaagagaattagatgaaataaatgtagaataatcttataaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="-" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46547" stop="34201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46247" g_stop="46015" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46014" i_stop="45327" i_length="688">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45326" g_stop="44826" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="734" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44825" i_stop="44620" i_length="206">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44619" g_stop="44599" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="755" r_length="21" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="-" ref_id="SGN-U335734" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335734" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46247" e_stop="46015"/>
          <exon e_start="45326" e_stop="44826"/>
          <exon e_start="44619" e_stop="44599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAATATTCCGAATACTGTGAATTTAAGTGTTGTAGTGAATTGTTCTTGTGGGAATAGTGACGTTTCGAAGGATTTTGGGTTGTTTGTGACGTACCCTGTGCGGGCGGAGGATAACTTGACGTCAGTGGCTTCAGCAGCCAATGTGAGTGAAGATATAATCAGAAGGTATAATCCCGCGGCCGTGTCCATACTAGATATAGGGCAAGGAATCATCTATATACCGGGAAGAGGTTGGTGTTCGTGATCTTTATGTGTTTGTTTTATTTCCTATTACAAGTTTTATGTGTTTGCGTTAGAACTTTATGAGGTGGTTTGGTAGCTGGTTAGAGTTATGCAGATATTAGTAATGCAGGAATTAGTTATGAGTGAATCTATATATTATTTTATGTAAATATTAATTATGTAGGGATTAGTTATACAAATCTTCTTATCTAGCTACCAAACGACCCCTGAGGTTGTAGTCCTAGTACTTCTTCTTTTGGTTCATATTTTAGTCTCGCAGGAACAGGGGAAAAATGCTCTCTTTTTCAATGATAAGGGAACCCCAACCACTCGTATGCAATAGCTCACAAACTGCACAGGAGAGCAAACTGCACTAGGCAAGTCCCATGTGACGAGCTCAGCCTAGAAGGCAAGTAGGCACTAAAAAAAGGTTAGGAAGGAAGTAGGAATTAATTTAGGAAGCAAAATGTTTTGTTTAAGGGTGACACTGGATTGAAGTTTATTGTTTACTATAAACTGGAGTTTGTAGTTTGAATGGATAGAATAAATGAGGATTGAATCATCAAGGATGTGTTTTGATGTGTCTAAATGCGCAACAGGAAATTGAAGCAGGGACACAGCACTATACATGGAACATTAATGCAAAATTTGTTGATGATACCTGTTTTCTTTTTTCTCTTTTTCGGCGTGATGCAGAGTGTAACGCTGGACCAATTGAACTTTAGCATTGTCATCTGTCTTTGTACTAAAGTTGTTCGTACAATGGATAAAGGGGTTCGAAGTACATGATTAACTCTGGTGGTGCTGAACTGCTCATATCGGGAAAATGTGACAATTTTCAAGCATGATAATCTTGTGTGAAATTCCTATGATTTACATAGTGCTTTTGATCAGCAAAATTCTAGCTCTACCAACTAAGTTTATCGCTGGGCTCCGTAATGGCAACGCAAGGCACAAGCAGTATTCACAAAAAGAAGAAGCACAACTGAGTGACTGTTCTATGTTGCTTGACTTCTTTGAGCTCTTCAATCTGCATCTTGGATCATTTCTTCAAATTGCCGACCTGCCTCGATTTCGGTCTTGAAAAAACATTTTTATATATACCACATGGAATGCAAATGTGAAGATTAAGAAATACATTTACCCTCAAAGAGAATTAGATGAAATAAATGTAGAATAATCTTATAAAAAAAAAAAGATCTTTAGTTTTGTTAGTGATGGTAAAATATCTAGAGATATACCCTTTTGGAAGCACAAACAAGCCCTTTCAAGTATTTTTCAGTGTCACTCTGTTTTCTGAAGATCAAACAGCAGTACTGAACAAGAAGAATCACTTAAAGATCAGAGTTATGCTTTTGAGGATTTAATGGAATGAAAGCTATCTTCTTATAGGTAAAAAAAAGAAAAAAGATATAAGGGCTTGC</genome_strand>
        <mrna_strand>GAATAATATTCCGAATACTGTGAATTTAAGTGTTGTAGTGAATTGTTCTTGTGGGAATAGTGACGTTTCGAAGGATTTTGGGTTGTTTGTGACGTACCCTGTGCGGGCGGAGGATAACTTGACGTCAGTGGCTTCAGCAGCCAATGTGAGTGAAGATATAATCAGAAGGTATAATCCCGCGGCCGTGTCCATACTAGATATAGGGCAAGGAATCATCTATATACCGGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTAACGCTGGACCAATTGAACTTTAGCATTGTCATCTGTCTTTGTACTAAAGTTGTTCGTACAATGGATAAAGGGGTTCGAAGTACATGATTAACTCTGGTGGTGCTGAACTGCTCATATCGGGAAAATGTGACAATTTTCAAGCATGATAATCTTGTGTGAAATTCCTATGATTTACATAGTGCTTTTGATCAGCAAAATTCTAGCTCTACCAACTAAGTTTATCGCTGGGCTCCGTAATGGCAACGCAAGGCACAAGCAGTATTCACAAAAAGAAGAAGCACAACTGAGTGACTGTTCTATGTTGCTTGACTTCTTTGAGCTCTTCAATCTGCATCTTGGATCATTTCTTCAAATTGCCGACCTGCCTCGATTTCGGTCTTGAAAAAACATTTTTATATATACCACATGGAATGCAAATGTGAAGATTAAGAAATACATTTACCCTCAAAGAGAATTAGATGAAATAAATGTAGAATAATCTTATAAAAAAAAAAA..............................................................................................................................................................................................................AAAAAAACTCGAGGGGGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343159" ref_strand="+" ref_description="SGN-U343159        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aatcatctatataccgggaagaggttggtgttcgtgatctttatgtgtttgttttatttcctattacaagttttatgtgtttgcgttagaactttatgaggtggtttggtagctggttagagttatgcagatattagtaatgcaggaattagttatgagtgaatctatatattattttatgtaaatattaattatgtagggattagttatacaaatcttcttatctagctaccaaacgacccctgaggttgtagtcctagtacttcttcttttggttcatattttagtctcgcaggaacaggggaaaaatgctctctttttcaatgataagggaaccccaaccactcgtatgcaatagctcacaaactgcacaggagagcaaactgcactaggcaagtcccatgtgacgagctcagcctagaaggcaagtaggcactaaaaaaaggttaggaaggaagtaggaattaatttaggaagcaaaatgttttgtttaagggtgacactggattgaagtttattgtttactataaactggagtttgtagtttgaatggatagaataaatgaggattgaatcatcaaggatgtgttttgatgtgtctaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="-" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46337" stop="45132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46037" g_stop="45432" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="-" ref_id="SGN-U343159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46037" e_stop="45432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATCTATATACCGGGAAGAGGTTGGTGTTCGTGATCTTTATGTGTTTGTTTTATTTCCTATTACAAGTTTTATGTGTTTGCGTTAGAACTTTATGAGGTGGTTTGGTAGCTGGTTAGAGTTATGCAGATATTAGTAATGCAGGAATTAGTTATGAGTGAATCTATATATTATTTTATGTAAATATTAATTATGTAGGGATTAGTTATACAAATCTTCTTATCTAGCTACCAAACGACCCCTGAGGTTGTAGTCCTAGTACTTCTTCTTTTGGTTCATATTTTAGTCTCGCAGGAACAGGGGAAAAATGCTCTCTTTTTCAATGATAAGGGAACCCCAACCACTCGTATGCAATAGCTCACAAACTGCACAGGAGAGCAAACTGCACTAGGCAAGTCCCATGTGACGAGCTCAGCCTAGAAGGCAAGTAGGCACTAAAAAAAGGTTAGGAAGGAAGTAGGAATTAATTTAGGAAGCAAAATGTTTTGTTTAAGGGTGACACTGGATTGAAGTTTATTGTTTACTATAAACTGGAGTTTGTAGTTTGAATGGATAGAATAAATGAGGATTGAATCATCAAGGATGTGTTTTGATGTGTCTAAATG</genome_strand>
        <mrna_strand>AATCATCTATATACCGGGAAGAGGTTGGTGTTCGTGATCTTTATGTGTTTGTTTTATTTCCTATTACAAGTTTTATGTGTTTGCGTTAGAACTTTATGAGGTGGTTTGGTAGCTGGTTAGAGTTATGCAGATATTAGTAATGCAGGAATTAGTTATGAGTGAATCTATATATTATTTTATGTAAATATTAATTATGTAGGGATTAGTTATACAAATCTTCTTATCTAGCTACCAAACGACCCCTGAGGTTGTAGTCCTAGTACTTCTTCTTTTGGTTCATATTTTAGTCTCGCAGGAACAGGGGAAAAATGCTCTCTTTTTCAATGATAAGGGAACCCCAACCACTCGTATGCAATAGCTCACAAACTGCACAGGAGAGCAAACTGCACTAGGCAAGTCCCATGTGACGAGCTCAGCCTAGAAGGCAAGTAGGCACTAAAAAAAGGTTAGGAAGGAAGTAGGAATTAATTTAGGAAGCAAAATGTTTTGTTTAAGGGTGACACTGGATTGAAGTTTATTGTTTACTATAAACTGGAGTTTGTAGTTTGAATGGATAGAATAAATGAGGATTGAATCATCAAGGATGTGTTTTGATGTGTCTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328995" ref_strand="+" ref_description="SGN-U328995        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr3:7615416-7618588 REVERSE | Aliases: MIL23.20(evalue: 8e-18, score=87.4) genbank/nr: LysM(evalue: 3e-23, score=111)">
      <seq>cacaattctatttcattgttttccccaaagtattaaattatctgaacaataatcattcattattttactaattttcaatccaactttatcaataacccactcagtcaacgcttactcctccaaaacccagctcaaatttcccagaaaaattcgttcttgcatcaatttccttcacacccatttcataatttccagaaaaatacatttttgtatcaatttcataatacccatttcaggaaatccataaaaatacgttcttgaatcaatttcccacatacccatttcagaaattttcattctttattcatgaaacatgtttgaatccaggccaagaagtgttttgagcttaggggttttcgttatactagtttacttatcctctgttccattaccagttaactcccaatgtaacagaggctgcgatttagctttagcttcattctatgtctggcgaggttcaaatctcactttaatctcagagatgttctccaccagtatagcagatatcgtttcttacaacaacagggacaatatccctaatcaagatagtgtaatcgccgggacaagaattaacatacctttccgttgtgattgcttgaacgacggggaggtattgggtcatgctttcccgtatagggttaaatccggtgatacttatgatcttgtggcgaggaactactctganttgacgactgcacagtggatgatgaagnttaatagttatcctgagaatatattccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="-" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47276" stop="45934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46976" g_stop="46234" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="-" ref_id="SGN-U328995" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46976" e_stop="46234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTCTATTTCATTGTTTTCCCCAAAGTATTAAATTATCTGAACAATAATCATTCATTATTTTACTAATTTTCAATCCAACTTTATCAATAACCCACTCAGTCAACGCTTACTCCTCCAAAACCCAGCTCAAATTTCCCAGAAAAATTCGTTCTTGCATCAATTTCCTTCACACCCATTTCATAATTTCCAGAAAAATACATTTTTGTATCAATTTCATAATACCCATTTCAGGAAATCCATAAAAATACGTTCTTGAATCAATTTCCCACATACCCATTTCAGAAATTTTCATTCTTTATTCATGAAACATGTTTGAATCCAGGCCAAGAAGTGTTTTGAGCTTAGGGGTTTTCGTTATACTAGTTTACTTATCCTCTGTTCCATTACCAGTTAACTCCCAATGTAACAGAGGCTGCGATTTAGCTTTAGCTTCATTCTATGTCTGGCGAGGTTCAAATCTCACTTTAATCTCAGAGATGTTCTCCACCAGTATAGCAGATATCGTTTCTTACAACAACAGGGACAATATCCCTAATCAAGATAGTGTAATCGCCGGGACAAGAATTAACATACCTTTCCGTTGTGATTGCTTGAACGACGGGGAGGTATTGGGTCATGCTTTCCCGTATAGGGTTAAATCCGGTGATACTTATGATCTTGTGGCGAGGAACTACTCTGATTTGACGACTGCACAGTGGATGATGAAGTTTAATAGTTATCCTGAGAATAATATTCCGA</genome_strand>
        <mrna_strand>CACAATTCTATTTCATTGTTTTCCCCAAAGTATTAAATTATCTGAACAATAATCATTCATTATTTTACTAATTTTCAATCCAACTTTATCAATAACCCACTCAGTCAACGCTTACTCCTCCAAAACCCAGCTCAAATTTCCCAGAAAAATTCGTTCTTGCATCAATTTCCTTCACACCCATTTCATAATTTCCAGAAAAATACATTTTTGTATCAATTTCATAATACCCATTTCAGGAAATCCATAAAAATACGTTCTTGAATCAATTTCCCACATACCCATTTCAGAAATTTTCATTCTTTATTCATGAAACATGTTTGAATCCAGGCCAAGAAGTGTTTTGAGCTTAGGGGTTTTCGTTATACTAGTTTACTTATCCTCTGTTCCATTACCAGTTAACTCCCAATGTAACAGAGGCTGCGATTTAGCTTTAGCTTCATTCTATGTCTGGCGAGGTTCAAATCTCACTTTAATCTCAGAGATGTTCTCCACCAGTATAGCAGATATCGTTTCTTACAACAACAGGGACAATATCCCTAATCAAGATAGTGTAATCGCCGGGACAAGAATTAACATACCTTTCCGTTGTGATTGCTTGAACGACGGGGAGGTATTGGGTCATGCTTTCCCGTATAGGGTTAAATCCGGTGATACTTATGATCTTGTGGCGAGGAACTACTCTGANTTGACGACTGCACAGTGGATGATGAAGNTTAATAGTTATCCTGAGAAT-ATATTCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339744" ref_strand="+" ref_description="SGN-U339744        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttttttttttttttttttcaatcgttttcactaatcttcaaaagcaaaagtaaaacacgattacaccaaacgtaagaaagagttatgaatcttaccgttaagcaatagtcctctattgcttaacaagcctaagtagaaaacaatctacccactaagctatcccacctggacaacctagacttttaacacaacacaccaaatcctttatagattcaggaatggtttacagtttaagaacaagagaatatattcctaaacaactagacgaaaagctcaagatattgctgttgttcttggaataattctgcctttactttgtagagcctttgcaagagttcttgaaaagtttttatcaagttgcaaaaactgaagaaaagtgtttaggaaagtgccttttatatgggcaagtcactttcctaaacttctttgccattggttggaagggtcactttctgacgccatcgggaagtgtgcacctactttctgcaccatctccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="-" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="98198" stop="16543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56330" g_stop="56315" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56314" i_stop="55868" i_length="447">
            <donor d_prob="0.259" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55867" g_stop="55379" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="501" r_length="485" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="-" ref_id="SGN-U339744" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56330" e_stop="56315"/>
          <exon e_start="55867" e_stop="55379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATCTTTTTCCTGTCAGCATCATCATATTTCTGCCTAGGCTTTGGAACAGTAATGGTCTTTTCTCCATCCTTTTCTTCCATCATTGAAACAAATGATCCATCTAGTACAATATCCCATAACTCGTTGTCTTCAGCCATGAGGTAGTCATGCATTCTAACTTTCCACCAACTGTAGAAATGTCCATTGAAACGAGGAGGTCTGTGTGATGACTGACCTTCTTCGAGGTTAAGTGGAGCTGTCATTCTAGAGCAATATCACTTCCTTGGTGTTAACCAAATAGATAGTGTCTGCTCTGATACCACTTGATAGAATGTATGCCTTTACTTAACAATAATGGACCAGGTCCCTTACTACACTAATGAATAAAATAGAAAGTTAAATGCAGTAAAATCAACACAATGATTTTACGTTGAAACCTCCTTACTTAAGGGAGTAAAACCACAACCTGTCTCACAGGATTTTCATTCGTTTTCACTAATCTTCAAAAGCAAAAGCGAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAATCCTCTATTGCTTAACATGCCTAAGTAGAAAAACAATCTACCCACTTAGCTATCCCACCTGGACAACCTAGACTTCTACCACAACACACCAATTCCTTTATAGATTCAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTTCTAAACAACTAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTTGGAATAATTCTATTTTTGCTTTGTATTAGCTTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTAAACAAAAATGTTTAGGAAAGTGTCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGACTGGAAAAGTCACACTTTCTGACGCCATCGGAAAGTGTGCACCTACTTTCTGTACCGTCTCCAGC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCAATCGTTTTCACTAATCTTCAAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATGAATCTTACCGTTAAGCAATAGTCCTCTATTGCTTAACAAGCCTAAGTAG-AAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAAATCCTTTATAGATTCAGGAATGGTTTACAGTTTAAGAACAAGAGAATATATTCCTAAACAACTAGACGAAAAGCTCAAGATATTGCTGTTGTTCTTGGAATAATTCTGCCTTTACTTTGTA-GAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTGAAGAAAAGTGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAGGGT--CACTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGCACCATCTCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341961" ref_strand="+" ref_description="SGN-U341961        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttgctcgtttctcagtttgctgcacacaagaagacaagaagcacaaataatcaatagcaaatgtacgcagcaaaagaagccaagatcgagtccaagatcgagtaaaatgggtctgtcaagtaatcaagaaaatagagtgatttgtcaaagccaaaaataatatattaaaggtataagttgatacaaataaggaaaaccttaaatatattagtaaggaaagaagttgtatataataaggattgtgctttaaaagggaatccttgtttaataataacttccttatcttatctgataaggactgaaggcaaaaggaactctataagaagaagaagacgctgatgaagaaaatgaggacttcatgcagagaacaagggagaattattcatcaaattgaagtcttcaaggttgataggattactacgtgtaaaacattcttgagtaagaaggttttatcgtgtagaactatttgtcttgtttttgttcttaattgtagtttacagtttattgtacaaagggtgggtttggctctttgtagggttgagtgttagtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="+" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="78048" stop="79173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78355" g_stop="78873" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="552" r_length="519" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="+" ref_id="SGN-U341961" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78355" e_stop="78873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGCACAAATAATCAATAGCAAATGTATGCAGCAAAAGAAGCCAAGATCGAGTCCAAGATCGAGTAAAATGGGTCAGCCAAGTAATCAAGAAAATAGAGTTATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTATTAAGGAAGGAAGTTGTATATAATAAGGATTGTACTTTAAAAGGGAATCCTTGTTTAATAATAACTTCCTTACCTTATCTGATAAGGACTGAAGGCAAAAGGAACTCTATAAGAAGAAGAAGACGCTGATGAAGAATATGACGACTTCACGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAAGATTACTACGTTTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTACTGTACAAAGGGTGGGTTTGGTTCTTTGTAGGGTTGAGTGTTAGTAAG</genome_strand>
        <mrna_strand>ACAAGAAGCACAAATAATCAATAGCAAATGTACGCAGCAAAAGAAGCCAAGATCGAGTCCAAGATCGAGTAAAATGGGTCTGTCAAGTAATCAAGAAAATAGAGTGATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTAGTAAGGAAAGAAGTTGTATATAATAAGGATTGTGCTTTAAAAGGGAATCCTTGTTTAATAATAACTTCCTTATCTTATCTGATAAGGACTGAAGGCAAAAGGAACTCTATAAGAAGAAGAAGACGCTGATGAAGAAAATGAGGACTTCATGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTACTACGTGTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGGCTCTTTGTAGGGTTGAGTGTTAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318523" ref_strand="+" ref_description="SGN-U318523        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: AT2G32990.1 | Symbol: None | glycosyl hydrolase family 9 protein, similar to endo-beta-1,4-glucanase GI:4972236 from (Fragaria x ananassa) | chr2:14010327-14013094 FORWARD | Aliases: T21L14.7, T21L14_7 (evalue: 0, score=771) genbank/nr: gi|15225764|ref|NP_180858.1| glycosyl hydrolase family 9 [Arabidopsis thaliana] gi|7484856|pir||T01108 cellulase (EC 3.2.1.4) T21L14.7 - Arabidopsis thaliana gi|2702268|gb|AAB91971.1| putative glucanse [Arabidopsis thaliana] gi|17064726|gb|AAL32517.1| putative glucanse [Arabidopsis thaliana] gi|31711936|gb|AAP68324.1| At2g32990 [Arabidopsis thaliana](evalue: 0, score=771)">
      <seq>ttgctcataacttctcctttttcttcactcctaaaacctctttaggagtgacagtagaaggagaaacaagcaaacaaacaaagaaaaaaaagatcaatttccatcatcatgaagagtttttatttgcactatttttctcttcttctttcattttccaccattttttcttcttctgctatagcttttgattatgcagatgctctttccaagagtctcctttactttgaagctcaaagatccggtcgattaccttacaatcaacgcgtcacttggcgcgaccattctggtttaactgatggtttagaagaaggagttgatttagttggaggttactacgatgctggtgaccatgtgaaatttggtctaccaatggcatttacagtaacaatgttgtcatggagtgttattgaatatggtgaagagatttcgtattcgggagaaattgaacatgcctttgaagctatcaaatggggtactgattatttcatcaaagcacatactagtccaaatgtcttatgggctgaggtcggagatggagatactgatcattactgttggcaacgtccagaagatatgacaacttctcgtcgatcatttaagatcgacgagaataaccctggctctgacttagccggggagacagctgccgcgatggcagctgcttctattgtgtttaggaaaagtaatccgcattactctcacttactattgcaccatgcccaacagttatttgagtttggtgacaagtacagaggaaagtatgacaaaagtgtgggagtagtgaaaaattattatgcatcagtgagtgggtacgaagatgagttgttgtgggcagcattgtggttatacaaagccaccgacaaagaagattatttggagtatgtaattaacaaggcaaattcatttggaggtattggttgggctattactgagttcagttgggatgttaaatttgctggtctacaaattattgcttctaagatactgcaggagaaaaaatacaacaaacacattcacatacaagaacaatatcgttcaaaagccgaacactacatatgttcatgtctcaacaaaaacaacggtactaccaacgtcaatcgtaccccaggcggactactatacgtccgtcaatggaacaacatgcaatacgtatcgaacgcggccttcctcctcacattctactcggatttccttagaaaaatcgacaaaaaaatcgtgtgtcatggaggaatagttgatcatgaagaactattcagttttgctaaatctcaagtggattacatattgggctcaaacccaaaaaacatgagttatctagtgggttttgggccaaattatccaaaaagagtacaccatagaggggcctcaattgtgtcttatagagagaataaaggctttattggatgtactcaagggtatgattattggtacaacaaaaatgggccaaacccaaatgttttaattggggcaattgttggtgggcctgacaatcaagatgaatttaatgatgacagagcaaattatgtgcaaacagaggcttgtacatataatacagcacctcttgtgggtatttttgctaagtttaattttttaagtgcaccattaattgcatctttctaaaatataaaataaaatagtattacacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="+" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87178" stop="91330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87478" g_stop="87789" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87790" i_stop="87872" i_length="83">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87873" g_stop="88085" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="525" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88086" i_stop="88171" i_length="86">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88172" g_stop="88372" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="726" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88373" i_stop="88446" i_length="74">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88447" g_stop="88701" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="981" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88702" i_stop="90360" i_length="1659">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90361" g_stop="91035" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="982" r_stop="1656" r_length="675" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="+" ref_id="SGN-U318523" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87478" e_stop="87789"/>
          <exon e_start="87873" e_stop="88085"/>
          <exon e_start="88172" e_stop="88372"/>
          <exon e_start="88447" e_stop="88701"/>
          <exon e_start="90361" e_stop="91035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCATAACTTCTCCTTTTTCTTCACTCCTAAAACCTCTTTAGGAGTGACAGTAGAAGGAGAAACAAGCAAACAAACAAAGAAAAAAAAGATCAATTTCCATCATCATGAAGAGTTTTTATTTGCACTATTTTTCTCTTCTTCTTTCATTTTCCACCATTTTTTCTTCTTCTGCTATAGCTTTTGATTATGCAGATGCTCTTTCCAAGAGTCTCCTTTACTTTGAAGCTCAAAGATCCGGTCGATTACCTTACAATCAACGCGTCACTTGGCGCGACCATTCTGGTTTAACTGATGGTTTAGAAGAAGGAGTAAGTAGAAACATTTGATTTCGAAATAAGTTATACGGAGAAATTAATGATTTATTTTTTTTAATTTGAAATTAACAATGTAGGTTGATTTAGTTGGAGGTTACTACGATGCTGGTGACCATGTGAAATTTGGTCTACCAATGGCATTTACAGTAACAATGTTGTCATGGAGTGTTATTGAATATGGTGAAGAGATTTCGTATTCGGGAGAAATTGAACATGCCTTTGAAGCTATCAAATGGGGTACTGATTATTTCATCAAAGCACATACTAGTCCAAATGTCTTATGGGCTGAGGTATTCAATTAAATTAAACACAATTTATAAATAAACATATATTATTATTATTATTTTGGATGGAATTAAAAATTTGTGATATTTAGGTCGGAGATGGAGATACTGATCATTACTGTTGGCAACGTCCAGAAGATATGACAACTTCTCGTCGATCATTTAAGATCGACGAGAATAACCCTGGCTCTGACTTAGCCGGGGAGACAGCTGCCGCGATGGCAGCTGCTTCTATTGTGTTTAGGAAAAGTAATCCGCATTACTCTCACTTACTATTGCACCATGCCCAACAGGTAATATGATTTAATTAACTAATTTAAATTATATGCACCGACCGATTGATATTATTTAATTAACTTGGATGCAGTTATTTGAGTTTGGTGACAAGTACAGAGGAAAGTATGACAAAAGTGTGGGAGTAGTGAAAAATTATTATGCATCAGTGAGTGGGTACGAAGATGAGTTGTTGTGGGCAGCATTGTGGTTATACAAAGCCACCGACAAAGAAGATTATTTGGAGTATGTAATTAACAAGGCAAATTCATTTGGAGGTATTGGTTGGGCTATTACTGAGTTCAGTTGGGATGTTAAATTTGCTGGTCTACAAATTATTGCTTCTAAGGTAACCGACACTGACTCTTTGTGTTTGATCGAACTTTTTAAAAAATATTATTATTGTGTGTTCATATCGAGTCATGATAAAATATTGTGAATAGTGTAGTCTTTTTCAAATGTTTGAATTTGTTGGGCCAGCATGTTTTGTACTGCTGCATTAGCTTCCAATATTTCAATTTCAAAATCTTATAAAACGTGTATTATATAAAGAAAATGTAAAAGAGAATGTATACACTTTTTAAAGTAAAAGAGTGATTGTGTCAAATCTCATTTGGTTGCTTTTTGTTAAGAGTCAAATGTGGAATAATACTTTTACTTCTAGGTGGGATATGCTTTTAACTTTATGGAAAACCAATTAGTGTTAAATAGAGATTGTTTTTTACCTGGTTGATGTCTGATTGAATTTAGACTCGCGCCAGCAAATTCTATCTTATAATAAAATACTTTCTTACAAAGTGACGATTTGTATCTAAGGATAAGTTAGTACCTCTTACTCCACTACAATCGTTGTTGGTGTGTAGTATTAAAGTTGATAGAAAGCTATGTGTGAGGGCAAATTAAGGTATCATAATAAATGGAGGACTAAATATATGTGGTTGATAAAGACATAGATAGGGGCCTTGGAGAACAATGTCACATGCATATTCATAGGTCATTTGACAGTACCTTTAATGTAGGGATCTTCAAATCAGATGGTTAAAGCAAAAATAGGAAAAACAAGAAAAAAAAACTGGATGAATTACCTCATATTTGTTCTAGCTACTCCATACTCTAATTTAATTTCTTTATTGAGTCGAACAATAGCGAAGTTCAGATGGTAATGTAAATGCGCGATAAATATAACAAGTTATATAAGTGAGCTAGTGTTACAAGACACTAATTATGAATATTGAGAACAAAAAGTAGAGGGAAGAGCTTTTTGTGAAATAGTAATACGCATTTTAGTGATAGAAAATGAAACTATAATCATAATTGGACTATAACTCTAATTATGATACTTTGTCCTAATTTGTGTGCTTTCTTTTTTAGTCCATTCTTAACAAAAGTCAATTTTTCATAATTGGAGATAATTTAACATTAGAATCCCTTTTTTTTTAATTTCAGATCATAAATTTCAATATTTTTTCTTTTTAGATTTTGTGCTAAATTAATTATTATCACGTAAATTTAGACATAGAAAATATTGACGATAATTGGGCTTAAATTATTATTTTTTTTTTCTCTTGCATATGATATGATGTAATATTTGTGGTGAAAACACTGCTGGTTTGAGTTCCCACAACATTGAATTTCCATCTACCTAACTTGAAAATTTTGAAAAATTATGAACAGATCATTTGCCCCACTTTGTCTCCACTTCCTGATGTTTCCCAATAAATATTGCATATATCTCTATATATGATGTAATAAAAATAATAAAGCACAAAGTGTATATTTATAAATAATTAAATTCAAAATTTAATAGAACATTCTTTTTTAGCATGATAAAAATCCCATCCCTTCAAAAATGGTATTATAGACAAAGCTAATAAATTGATTTGACAACCCACTGCCTAGAATCACATGACCCATACTTTGACAATATTTTGATGGTATCTTTTTTTTTTTTTTTTTTAACTTAACTTATTCGAGACTGAAACGTAATTATATAAAATTTTGAATGCAGATACTGCAGGAGAAAAAATACAACAAACACATTCACATACAAGAACAATATCGTTCAAAAGCCGAACACTACATATGTTCATGTCTCAACAAAAACAACGGTACTACCAACGTCAATCGTACCCCAGGCGGACTACTATACGTCCGTCAATGGAACAACATGCAATACGTATCGAACGCGGCCTTCCTCCTCACATTCTACTCGGATTTCCTTAGAAAAATCGACAAAAAAATCGTGTGTCATGGAGGAATAGTTGATCATGAAGAACTATTCAGTTTTGCTAAATCTCAAGTGGATTACATATTGGGCTCAAACCCAAAAAACATGAGTTATCTAGTGGGTTTTGGGCCAAATTATCCAAAAAGAGTACACCATAGAGGGGCCTCAATTGTGTCTTATAGAGAGAATAAAGGCTTTATTGGATGTACTCAAGGGTATGATTATTGGTACAACAAAAATGGGCCAAACCCAAATGTTTTAATTGGGGCAATTGTTGGTGGGCCTGACAATCAAGATGAATTTAATGATGACAGAGCAAATTATGTGCAAACAGAGGCTTGTACATATAATACAGCACCTCTTGTGGGTATTTTTGCTAAGTTTAATTTTTTAAGTGCACCATTAATTGCATCTTTCTAAAATATAAAATAAAATAGTATTACACAAAAAAGTGTT</genome_strand>
        <mrna_strand>TTGCTCATAACTTCTCCTTTTTCTTCACTCCTAAAACCTCTTTAGGAGTGACAGTAGAAGGAGAAACAAGCAAACAAACAAAGAAAAAAAAGATCAATTTCCATCATCATGAAGAGTTTTTATTTGCACTATTTTTCTCTTCTTCTTTCATTTTCCACCATTTTTTCTTCTTCTGCTATAGCTTTTGATTATGCAGATGCTCTTTCCAAGAGTCTCCTTTACTTTGAAGCTCAAAGATCCGGTCGATTACCTTACAATCAACGCGTCACTTGGCGCGACCATTCTGGTTTAACTGATGGTTTAGAAGAAGGA...................................................................................GTTGATTTAGTTGGAGGTTACTACGATGCTGGTGACCATGTGAAATTTGGTCTACCAATGGCATTTACAGTAACAATGTTGTCATGGAGTGTTATTGAATATGGTGAAGAGATTTCGTATTCGGGAGAAATTGAACATGCCTTTGAAGCTATCAAATGGGGTACTGATTATTTCATCAAAGCACATACTAGTCCAAATGTCTTATGGGCTGAG......................................................................................GTCGGAGATGGAGATACTGATCATTACTGTTGGCAACGTCCAGAAGATATGACAACTTCTCGTCGATCATTTAAGATCGACGAGAATAACCCTGGCTCTGACTTAGCCGGGGAGACAGCTGCCGCGATGGCAGCTGCTTCTATTGTGTTTAGGAAAAGTAATCCGCATTACTCTCACTTACTATTGCACCATGCCCAACAG..........................................................................TTATTTGAGTTTGGTGACAAGTACAGAGGAAAGTATGACAAAAGTGTGGGAGTAGTGAAAAATTATTATGCATCAGTGAGTGGGTACGAAGATGAGTTGTTGTGGGCAGCATTGTGGTTATACAAAGCCACCGACAAAGAAGATTATTTGGAGTATGTAATTAACAAGGCAAATTCATTTGGAGGTATTGGTTGGGCTATTACTGAGTTCAGTTGGGATGTTAAATTTGCTGGTCTACAAATTATTGCTTCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGCAGGAGAAAAAATACAACAAACACATTCACATACAAGAACAATATCGTTCAAAAGCCGAACACTACATATGTTCATGTCTCAACAAAAACAACGGTACTACCAACGTCAATCGTACCCCAGGCGGACTACTATACGTCCGTCAATGGAACAACATGCAATACGTATCGAACGCGGCCTTCCTCCTCACATTCTACTCGGATTTCCTTAGAAAAATCGACAAAAAAATCGTGTGTCATGGAGGAATAGTTGATCATGAAGAACTATTCAGTTTTGCTAAATCTCAAGTGGATTACATATTGGGCTCAAACCCAAAAAACATGAGTTATCTAGTGGGTTTTGGGCCAAATTATCCAAAAAGAGTACACCATAGAGGGGCCTCAATTGTGTCTTATAGAGAGAATAAAGGCTTTATTGGATGTACTCAAGGGTATGATTATTGGTACAACAAAAATGGGCCAAACCCAAATGTTTTAATTGGGGCAATTGTTGGTGGGCCTGACAATCAAGATGAATTTAATGATGACAGAGCAAATTATGTGCAAACAGAGGCTTGTACATATAATACAGCACCTCTTGTGGGTATTTTTGCTAAGTTTAATTTTTTAAGTGCACCATTAATTGCATCTTTCTAAAATATAAAATAAAATAGTATTACACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336548" ref_strand="+" ref_description="SGN-U336548        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G32990.1 | Symbol: None | glycosyl hydrolase family 9 protein, similar to endo-beta-1,4-glucanase GI:4972236 from (Fragaria x ananassa) | chr2:14010327-14013094 FORWARD | Aliases: T21L14.7, T21L14_7 (evalue: 1e-24, score=110) genbank/nr: gi|56784097|dbj|BAD81426.1| putative endo-beta-1,4-glucanase [Oryza sativa (japonica cultivar-group)] >gi|56783923|dbj|BAD81360.1| putative endo-beta-1,4-glucanase [Oryza sativa (japonica cultivar-group)] (evalue: 5e-43, score=100)">
      <seq>tgaaatttggtctaccaatggcatttacagtaacaatgttgtcatggagtgttattgaatatggtgaagagatttcgtattcgggagaaattgaacatgcctttgaagctatcaaatggggtactgattatttcatcaaagcacatactagtccaaatgtcttatgggctgaggtattcaattaaattaaacacaatttataaataaacatatattattattattattttggatggaattaaaaatttgtgatatttaggtcggagatggagatactgatcattactgttggcaacgtccagaagatatgacaacttctcgtcgatcatttaagatcgacgagaataaccctggctctgacttagccggggagacagctgccgcgatggcagctgcttctattgtgtttaggaaaagtaatccgcattactcacttactattgcaccatgccccgcaggtaatatgatttaatttaactattttaattatatgcaccgaccgattgatattatttatttactttgcatgcagttattttgagttgggtgacnagtacagaggaaagtatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="+" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87613" stop="88784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87913" g_stop="88484" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="+" ref_id="SGN-U336548" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87913" e_stop="88484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTTGGTCTACCAATGGCATTTACAGTAACAATGTTGTCATGGAGTGTTATTGAATATGGTGAAGAGATTTCGTATTCGGGAGAAATTGAACATGCCTTTGAAGCTATCAAATGGGGTACTGATTATTTCATCAAAGCACATACTAGTCCAAATGTCTTATGGGCTGAGGTATTCAATTAAATTAAACACAATTTATAAATAAACATATATTATTATTATTATTTTGGATGGAATTAAAAATTTGTGATATTTAGGTCGGAGATGGAGATACTGATCATTACTGTTGGCAACGTCCAGAAGATATGACAACTTCTCGTCGATCATTTAAGATCGACGAGAATAACCCTGGCTCTGACTTAGCCGGGGAGACAGCTGCCGCGATGGCAGCTGCTTCTATTGTGTTTAGGAAAAGTAATCCGCATTACTCTCACTTACTATTGCACCATGCCCAACAGGTAATATGATTTAA-TTAACTAATTTAAATTATATGCACCGACCGATTGATATTATTTAATTAACTTGGATGCAGTTA-TTTGAGTTTGGTGACAAGTACAGAGGAAAGTATGA</genome_strand>
        <mrna_strand>TGAAATTTGGTCTACCAATGGCATTTACAGTAACAATGTTGTCATGGAGTGTTATTGAATATGGTGAAGAGATTTCGTATTCGGGAGAAATTGAACATGCCTTTGAAGCTATCAAATGGGGTACTGATTATTTCATCAAAGCACATACTAGTCCAAATGTCTTATGGGCTGAGGTATTCAATTAAATTAAACACAATTTATAAATAAACATATATTATTATTATTATTTTGGATGGAATTAAAAATTTGTGATATTTAGGTCGGAGATGGAGATACTGATCATTACTGTTGGCAACGTCCAGAAGATATGACAACTTCTCGTCGATCATTTAAGATCGACGAGAATAACCCTGGCTCTGACTTAGCCGGGGAGACAGCTGCCGCGATGGCAGCTGCTTCTATTGTGTTTAGGAAAAGTAATCCGCATTA--CTCACTTACTATTGCACCATGCCCCGCAGGTAATATGATTTAATTTAACT-ATTTTAATTATATGCACCGACCGATTGATATTATTTATTTACTTTGCATGCAGTTATTTTGAGTTGGGTGACNAGTACAGAGGAAAGTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326416" ref_strand="+" ref_description="SGN-U326416        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | nitrate transporter (NTP3), nearly identical to nitrate transporter (Arabidopsis thaliana) GI:4490323; contains Pfam profile: PF00854 POT family | chr3:7626764-7629158 REVERSE | Aliases: MIL23.23(evalue: 1e-90, score=330) genbank/nr: gi|4490323|emb|CAB38706.1| nitrate transporter [Arabidopsis thaliana] (evalue: 8e-89, score=330)">
      <seq>tcttgatgactctgcagctgcaaatgagaatagcaagaatcgttggatagtttcaacagttacagaagtcgaagaagtgaaaatggtgctcaaattgattcccatatggtccacatgcatacttttttggacagtatactctcagatgaataccttcaccattgaacaagctaccttcatgaaccggaatgttggaaactttgctgtccctgcaggttccttatccgtgtttctctttattagcatacttctgtttacttccataaacgaaagggtcacagttcgtattgccagaaaaatcactcacaacagccaaggaatcacaagccttcagagagttggaattggactactactctctattgttggtatggtagcttcagctctggtagaaaaacgacgaagggaacatgccatccatcataacttcaagataagcgcgttttggttagtgcctcaattcttcattgtaggtgctggggaagcttttgcctatgtaggacagctagagtttttcatcagggaggcaccagaagggatgaaatctatgagcacaggcctatttctcagcacactctcgatgggatatttcgtgagtagtttgctagtattcgttgtacagaaagcaacaaaaggaagatggcttaaaagcaatttaaacaaaggaaaactggatttattctactggttgctagcagttctcggagtaattaatttcttgattttcattgcattttcaatgaaacaccaatacaaggtgcagaaacttagcagtattgaggattctgcagaagagctcgggagttggaaggatttgaccctcgacaacaaggaaaagaaactcgaagcagacgagaaggtggaagcttaaatacagcatattagctttcaatgaatcattcatttccagagtttgtaatatagaaccgtattcaattatncaagacgtcaatacaaatttgctaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="+" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="95426" stop="96993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95726" g_stop="96693" g_length="968"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="968" r_length="968" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="+" ref_id="SGN-U326416" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>968</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95726" e_stop="96693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGATGACTCTGCAGCTGCAAATGAGAATAGCAAGAATCGTTGGATAGTTTCAACAGTTACAGAAGTCGAAGAAGTGAAAATGGTGCTCAAATTGATTCCCATATGGTCCACATGCATACTTTTTTGGACAGTATACTCTCAGATGAATACCTTCACCATTGAACAAGCTACCTTCATGAACCGGAATGTTGGAAACTTTGCTGTCCCTGCAGGTTCCTTATCCGTGTTTCTCTTTATTAGCATACTTCTGTTTACTTCCATAAACGAAAGGGTCACAGTTCGTATTGCCAGAAAAATCACTCACAACAGCCAAGGAATCACAAGCCTTCAGAGAGTTGGAATTGGACTACTACTCTCTATTGTTGGTATGGTAGCTTCAGCTCTGGTAGAAAAACGACGAAGGGAACATGCCATCCATCATAACTTCAAGATAAGCGCGTTTTGGTTAGTGCCTCAATTCTTCATTGTAGGTGCTGGGGAAGCTTTTGCCTATGTAGGACAGCTAGAGTTTTTCATCAGGGAGGCACCAGAAGGGATGAAATCTATGAGCACAGGCCTATTTCTCAGCACACTCTCGATGGGATATTTCGTGAGTAGTTTGCTAGTATTCGTTGTACAGAAAGCAACAAAAGGAAGATGGCTTAAAAGCAATTTAAACAAAGGAAAACTGGATTTATTCTACTGGTTGCTAGCAGTTCTCGGAGTAATTAATTTCTTGATTTTCATTGCATTTTCAATGAAACACCAATACAAGGTGCAGAAACTTAGCAGTATTGAGGATTCTGCAGAAGAGCTCGGGAGTTGGAAGGATTTGACCCTCGACAACAAGGAAAAGAAACTCGAAGCAGACGAGAAGGTGGAAGCTTAAATACAGCATATTAGCTTTCAATGAATCATTCATTTCCAGAGTTTGTAATATAGAACCGTATTCAATTATCAAAGACGTCAATACAAATTTGCTACCA</genome_strand>
        <mrna_strand>TCTTGATGACTCTGCAGCTGCAAATGAGAATAGCAAGAATCGTTGGATAGTTTCAACAGTTACAGAAGTCGAAGAAGTGAAAATGGTGCTCAAATTGATTCCCATATGGTCCACATGCATACTTTTTTGGACAGTATACTCTCAGATGAATACCTTCACCATTGAACAAGCTACCTTCATGAACCGGAATGTTGGAAACTTTGCTGTCCCTGCAGGTTCCTTATCCGTGTTTCTCTTTATTAGCATACTTCTGTTTACTTCCATAAACGAAAGGGTCACAGTTCGTATTGCCAGAAAAATCACTCACAACAGCCAAGGAATCACAAGCCTTCAGAGAGTTGGAATTGGACTACTACTCTCTATTGTTGGTATGGTAGCTTCAGCTCTGGTAGAAAAACGACGAAGGGAACATGCCATCCATCATAACTTCAAGATAAGCGCGTTTTGGTTAGTGCCTCAATTCTTCATTGTAGGTGCTGGGGAAGCTTTTGCCTATGTAGGACAGCTAGAGTTTTTCATCAGGGAGGCACCAGAAGGGATGAAATCTATGAGCACAGGCCTATTTCTCAGCACACTCTCGATGGGATATTTCGTGAGTAGTTTGCTAGTATTCGTTGTACAGAAAGCAACAAAAGGAAGATGGCTTAAAAGCAATTTAAACAAAGGAAAACTGGATTTATTCTACTGGTTGCTAGCAGTTCTCGGAGTAATTAATTTCTTGATTTTCATTGCATTTTCAATGAAACACCAATACAAGGTGCAGAAACTTAGCAGTATTGAGGATTCTGCAGAAGAGCTCGGGAGTTGGAAGGATTTGACCCTCGACAACAAGGAAAAGAAACTCGAAGCAGACGAGAAGGTGGAAGCTTAAATACAGCATATTAGCTTTCAATGAATCATTCATTTCCAGAGTTTGTAATATAGAACCGTATTCAATTATNCAAGACGTCAATACAAATTTGCTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326044" ref_strand="+" ref_description="SGN-U326044        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT1G12000.1 | Symbol: None | pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative, strong similarity to SP:Q41141 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit (EC 2.7.1.90) (PFP) ((PPI-PFK) {Ricinus communis}; contains Pfam profile PF00365: Phosphofructokinase | chr1:4049894-4053833 REVERSE | Aliases: F12F1.13, F12F1_13 (evalue: 2e-60, score=228) genbank/nr: gi|52076758|dbj|BAD45669.1| putative pyrophosphate-dependent phosphofructokinase beta subunit [Oryza sativa (japonica cultivar-group)] (evalue: 1e-64, score=248)">
      <seq>taactctccactttctacgatttcacttgaaaaaaaataaaattaaacttcacatttttctcacctctcacatcttctccttctcgtcacacacacatttccaattagttaagcacgaaaaacatggcagcggcagccgtcggccccggacgatcgacctcgtcgtacagcgaagtccaacacaaccgtctcattgtatcgcttcctctgccttcggtcctcaaaaagcccttttcagtcattgatggccctcctagttccgccgctggaaatccaggtgaaattgcaaagctttttccaaatctgtttgggcagccttccgtgtcgttacttccaggtcacacatctggagctgcattggatcatactctaaaagtcggggttgtgttgtccggaggacaggctcctggtgggcacaatgtcatctctggaatttttgactatttgcaggagaaaacgaaaaatagcacactctatggattcaagggaggtccagcagggataatgaactgtaaatatgtagagttgacagcggattttgtttatccttacagaaatcaaggtggctttgatatgatctgtagtggtagagacaagatagaaagtgatgaacagtttaatcaagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="+" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="96825" stop="100097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97125" g_stop="97401" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97402" i_stop="98603" i_length="1202">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98604" g_stop="98765" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="439" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98766" i_stop="98892" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98893" g_stop="99014" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="561" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99015" i_stop="99740" i_length="726">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99741" g_stop="99794" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="615" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99795" i_stop="99928" i_length="134">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99929" g_stop="99943" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="630" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="+" ref_id="SGN-U326044" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97125" e_stop="97401"/>
          <exon e_start="98604" e_stop="98765"/>
          <exon e_start="98893" e_stop="99014"/>
          <exon e_start="99741" e_stop="99794"/>
          <exon e_start="99929" e_stop="99943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTCCACTTTCTACGATTTCACTTGAAAAAAAATAAAATTAAACTTCACATTTTTCTCACCTCTCACATCTTCTCCTTCTCGTCACACACACATTTCCAATTAGTTAAGCACGAAAAACATGGCAGCGGCAGCCGTCGGCCCCGGACGATCGACCTCGTCGTACAGCGAAGTCCAACACAACCGTCTCATTGTATCGCTTCCTCTGCCTTCGGTCCTCAAAAAGCCCTTTTCAGTCATTGATGGCCCTCCTAGTTCCGCCGCTGGAAATCCAGGTTAATCTCACTTTTTCTAGAGGAAAATACTTTACTGATTCCAACGTGCGATTTCTCGGTTTTCAATTGTGTAGTTGCTTTCTATTTTTGAATTTTTAGTTCATCCATTGTGTTTCGTATTTTAAAAAATGTGTATCGTTGTTCAAACCTCAGCAGAGACAAAAAGCACGAGGTGATTTTTTTCATCTGTTATAAGCCTCGGTGGATAGAGCTATCTCGTATCTATTGTTGTGTATGCACGCAAGTTAATCAAAAAACAAAAGAAAGAAGTGTACCATTAAATGTGCAAGGGAATGGAAATAATCTGACATTCACTTGATGTGCAGCATGAGCATTATTACTAACTTCTTACTCTGGTTTCTAGTTGATTTTTAGATAGTTTTATGGATTTCGATTAATTGGCAAGCTTCATAATTTGATAATAGGCCTGCATCTATGATATAAGTTGATTAGATGTTTGATGATCAGAAACTTTTTTTGAAAAAAAAAAAAACACAGTAGGATGTAACACTGAGATTTCATTCATTCTATTTAATATGACACTCTTATCTCATAACTCGGTACAAAAGAATTGACATGCTTGTGTCAGCTTGTATAGGAATGGTAGGTAAAGACCACTAGATACCAACAGTATTTCATATAATATGATACATAGAAGCATTTATTTATGTGGTAGTACAAGAAACTAGTAAATGAGTAGATTTATAAGGACTCTATCTTCTTATGTACTTGGTACCAAAGTTAGGCCTATCTAATCTTGGACTAAATAAAAATTATTCAAAATTTTATATAAAAAAGACACAAACTTGGGCTTTTAGTTAGTGCATCGTTATTATTAGTCGTGTGGTTTTCCCAGAGATGGCGCGAGTTCTGTGCCAAATTAGGTGGTGTGGGGAAGATTAGAACTAATTTTGTCTTGAATCTAGCACCAACACAAGGTACTATTCCTCATAAAATAATTTTTTACTGAAGAGCTTTAATGTGGTATAGCCAGTTTAAAAATTTGAAGCAAATGATGACAAACAAACGAGGCTAATCTAATTTTCTGCTCGAAATGGAGGTAAGTTTTCCACATAAAGGCATCACACATGTTCAATTTCCGATCTCATTAGCCCAAGAGATAGAATAACGCTAAATATTCTGTTACAAAAAAGCCTTTTTTCATGCTTAGCTTCATATTCATTTTAACATCATTATTGTAGGTGAAATTGCAAAGCTTTTTCCAAATCTGTTTGGGCAGCCTTCCGTGTCGTTACTTCCAGGTCACACATCTGGAGCTGCATTGGATCATACTCTAAAAGTCGGGGTTGTGTTGTCCGGAGGACAGGCTCCTGGTGGGCACAATGTCATCTCTGGAATTTTTGGTGAGTGCTTTTCCAATAGTTCCTACTTAATGGTATTTACTTTTTTGTAGTTCTGTGCATATGTGTAGTTATTACATATTAGTACATAAGCGTGTATCTCAGCAATTAGTTGACTATTTTTCTCTAGACTATTTGCAGGAGAAAACGAAAAATAGCACACTCTATGGATTCAAGGGAGGTCCAGCAGGGATAATGAACTGTAAATATGTAGAGTTGACAGCGGATTTTGTTTATCCTTACAGAAATCAAGTAAGAAATTTACTTTCCATCATCCACTTAATATACATGGTCTTTGTTTGCACTTGTTCCAAACAGTTCTTCTATAGCAAATTATGCTTGTGGACTTTTATGGAAAAAATATTTTTCTATTCGAGTTATCCGTAACAATATGATGGCAGCGTATTTAGTTTCTGATGTGGGAGCTTTGCAACTATTTTTTTTTTTTGTAATTGAAATTTTCATTAATAGCCAAGTAAGGACATCACATTGCTTAGCATAGCATGTCACAGCTAACTAATCTCCAGGAGAATACACACTCTTATCATCCTAGACATCAATGCTACCTTTCTAGATGTATCATTATAAACTTCAAATTGACTTCCAATTTGTACGATGAGTTTCTGTAGTAAATTTGTAATGCACAGTGAAGACACATACTATTTCTCTGGCAATGCTTTCAAGCTCCCTTTTTTGTTCCTTCAAAAATACGGTAGTTCCTTTCTCCCCATATGGCATGTATATTTTCAGCATACGTCAATTTGAGAAGCTTTGTCTGTTGTGTTTTACTTCTTCTGCGACTGGTTATCCAAGAGACTGCTGCCGTGAATTGATCAGAATTGTTTGAATTTTGCAACTTGATTAGCCTAAACCTCTACCTTCGGTTTAGTGGATATTTTATCCTTATTGTTTTCTCTTTTTGATTTACCGCCTAATTTTACTTCTGTAGAACATGTTTAATTGATAATATCTTGACAGGGTGGCTTTGATATGATCTGTAGTGGTAGAGACAAGATAGAAAGTGATGAACAGGTTCCGATAGTTCTTCACTTCATCACCTATCAACTTCTTTTTATTTCTTCTTTTTATTCTACACAAACTATGCTTCATTGTAACTAAGTCTGCATAATGTTTTTGTTTTCTTCTTCTTCTTCTTCTTTTTTCAGTTTAATCAAGCTGCT</genome_strand>
        <mrna_strand>TAACTCTCCACTTTCTACGATTTCACTTGAAAAAAAATAAAATTAAACTTCACATTTTTCTCACCTCTCACATCTTCTCCTTCTCGTCACACACACATTTCCAATTAGTTAAGCACGAAAAACATGGCAGCGGCAGCCGTCGGCCCCGGACGATCGACCTCGTCGTACAGCGAAGTCCAACACAACCGTCTCATTGTATCGCTTCCTCTGCCTTCGGTCCTCAAAAAGCCCTTTTCAGTCATTGATGGCCCTCCTAGTTCCGCCGCTGGAAATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTGCAAAGCTTTTTCCAAATCTGTTTGGGCAGCCTTCCGTGTCGTTACTTCCAGGTCACACATCTGGAGCTGCATTGGATCATACTCTAAAAGTCGGGGTTGTGTTGTCCGGAGGACAGGCTCCTGGTGGGCACAATGTCATCTCTGGAATTTTTG...............................................................................................................................ACTATTTGCAGGAGAAAACGAAAAATAGCACACTCTATGGATTCAAGGGAGGTCCAGCAGGGATAATGAACTGTAAATATGTAGAGTTGACAGCGGATTTTGTTTATCCTTACAGAAATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCTTTGATATGATCTGTAGTGGTAGAGACAAGATAGAAAGTGATGAACAG......................................................................................................................................TTTAATCAAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329126" ref_strand="+" ref_description="SGN-U329126        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G12000.1 | Symbol: None | pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative, strong similarity to SP:Q41141 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit (EC 2.7.1.90) (PFP) ((PPI-PFK) {Ricinus communis}; contains Pfam profile PF00365: Phosphofructokinase | chr1:4049894-4053833 REVERSE | Aliases: F12F1.13, F12F1_13 (evalue: 1e-82, score=301) genbank/nr: gi|3790100|gb|AAC67586.1| pyrophosphate-dependent phosphofructokinase beta subunit [Citrus x paradisi](evalue: 2e-82, score=306)">
      <seq>tcatgatagatgctcgttcaacaggaaaatactatcactttgtaaggcttatgggtcgtgctgcatcacacatcacattggagtgtgctcttcaaacccatcctaatattaccatcattggcgaagaggttgcagcccagaagcaaacacttaaaagtgttacagattacatcgtaggagtaatttgtaaacgggcaaaacttggttataattatggggttatactaatacccgaaggcctgattgacttcattccagaggtgcaacagttgattgcagagctcaatgaaatcctggctcatgatgttattgatgcagctggcagttggaaaaagaaactccaaagccagtctcgcgatctctttgaactcctaccacaagcaattcaggagcagttacttcttgaaagagatccacatggaaatgtccaggttgccaaaatagaaactgagaaaatgcttattcaaatggtggaagctgaacttngaagcaagaggaaggaaggttcatataccaaacaattttaagggcagtctcatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="+" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="100286" stop="102339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100586" g_stop="100624" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100625" i_stop="100776" i_length="152">
            <donor d_prob="0.861" d_score="0.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100777" g_stop="100865" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="128" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100866" i_stop="101317" i_length="452">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101318" g_stop="101449" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="260" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101450" i_stop="101645" i_length="196">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101646" g_stop="101816" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="431" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101817" i_stop="101926" i_length="110">
            <donor d_prob="0.515" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101927" g_stop="102039" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="544" r_length="113" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="+" ref_id="SGN-U329126" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100586" e_stop="100624"/>
          <exon e_start="100777" e_stop="100865"/>
          <exon e_start="101318" e_stop="101449"/>
          <exon e_start="101646" e_stop="101816"/>
          <exon e_start="101927" e_stop="102039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGATAGATGCTCGTTCAACAGGAAAATACTATCACTGTAAGTACATAAATTGTGGACAACTTGGGATACTACTTTATACATGATTAACTTTGAGAACTAGGACTTGTTTCTTCTAAATAAATTTTTAATTTTAACTCTCAATAGTATTATTTATGTTCTTCTTAGCAAGTAATTTATGGTTTCTCTAGTTGTAAGGCTTATGGGTCGTGCTGCATCACACATCACATTGGAGTGTGCTCTTCAAACCCATCCTAATATTACCATCATTGGCGAAGAGGTAATTGTCTTCCAAATCATTGAACATATTTTTCATGCATGTATGCAGACATATTACACTTAAATGTGCCTAAAACTTGAAGAGAGAATTCAGTATTCTCCTTAAGTTCATTACAAATGCACGGTTTGAATAAATTTGTAATGAAGAAACTCTTTGCAGTAATGGTTATTTTTGGAAGTTCAATTTTATTTAAAGTTTCTCTAAGTTTCTATTGTATACTATGTCTAAGGAAAAACCTTAACTTTACCACTTAAATTATTAGGTAGGGACTTCAGTGCATGCCATCGAGAATTCGATATGATTAATTGCATTAAAATTCCATTTCCATGACTTTCTTTTTCTGAACACTATTATGTAAAGAGGATCATGCCAAGTATGTTATTAGAATAAACTTTATAGAAACTGTTTCATGATTTTTCCCTGACATTGACAAAGGTACTGTTTTGCCACAGGTTGCAGCCCAGAAGCAAACACTTAAAAGTGTTACAGATTACATCGTAGGAGTAATTTGTAAACGGGCAAAACTTGGTTATAATTATGGGGTTATACTAATACCCGAAGGCCTGATTGACTTCATTCCAGAGGTTCAAACTTTGAACTGTAGAAATCATATTTCCACTCTATTTCTTGTAATATAACTTTTGGTCATGGTTACCTCCATTTCACTCAGTTCTCCTTTCAGCTTGTTCTGTCTTTTGCATCTGATTTAGTTGATTCGTTTATCATCATGAACAGAAATAATCAATAAAGTGTTGTTAAGATTATCTCTCTTATTTTCAGGTGCAACAGTTGATTGCAGAGCTCAATGAAATCCTGGCTCATGATGTTATTGATGCAGCTGGCAGTTGGAAAAAGAAACTCCAAAGCCAGTCTCGCGATCTCTTTGAACTCCTACCACAAGCAATTCAGGAGCAGTTACTTCTTGAAAGAGATCCACATGGAAATGTCCAGGTACTCTCCTTCAGTTCGATGGAAGTCAGGCAAATAGGACAATTGCTCATTTAGTCAAGCCATACTATGTTCTTTTTCTTATAGTACATTTTCTTTTGCAATTTCTACAGGTTGCCAAAATAGAAACTGAGAAAATGCTTATTCAAATGGTGGAAGCTGAACTTGAAAGCAAGAGGAAGGAAGGTTCATATACCAAACAATTTAAAGGGCAGTCTCATTTTTT</genome_strand>
        <mrna_strand>TCATGATAGATGCTCGTTCAACAGGAAAATACTATCACT........................................................................................................................................................TTGTAAGGCTTATGGGTCGTGCTGCATCACACATCACATTGGAGTGTGCTCTTCAAACCCATCCTAATATTACCATCATTGGCGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGCCCAGAAGCAAACACTTAAAAGTGTTACAGATTACATCGTAGGAGTAATTTGTAAACGGGCAAAACTTGGTTATAATTATGGGGTTATACTAATACCCGAAGGCCTGATTGACTTCATTCCAGAG....................................................................................................................................................................................................GTGCAACAGTTGATTGCAGAGCTCAATGAAATCCTGGCTCATGATGTTATTGATGCAGCTGGCAGTTGGAAAAAGAAACTCCAAAGCCAGTCTCGCGATCTCTTTGAACTCCTACCACAAGCAATTCAGGAGCAGTTACTTCTTGAAAGAGATCCACATGGAAATGTCCAG..............................................................................................................GTTGCCAAAATAGAAACTGAGAAAATGCTTATTCAAATGGTGGAAGCTGAACTTNGAAGCAAGAGGAAGGAAGGTTCATATACCAAACAATTTTAAGGGCAGTCTCATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344267" ref_strand="-" ref_description="SGN-U344267        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G04040.1 | Symbol: None | pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative, strong similarity to SP:Q41141 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent  6-phosphofructose-1-kinase) (PPI-PFK) {Ricinus communis} | chr4:1939248-1942952 FORWARD | Aliases: T24H24.15, T24H24_15 (evalue: 1e-46, score=183) genbank/nr: gi|52076758|dbj|BAD45669.1| putative pyrophosphate-dependent phosphofructokinase beta subunit [Oryza sativa (japonica cultivar-group)] (evalue: 1e-46, score=189)">
      <seq>aaaacaggcttgatttcctctgtgggaaatttgaaagctccagttgaagactggacggtcggtggaacagcactaacatctttgatggatgtcgaaaggagacatggtaagttcaagcctgtgattaagaaggcaatggtggaactagaaggtgctcctttcaaaaaatttgcttccttgcgagaagagtgggctctaaagaatcgatacttcagccctggtccacttcaatttgttggcccaacatcaaatgaaaccaatcacactttaatgctggagttgggagccaaagcttaattgattcccaaatctgaactcgaacttctgttcctttgacattttcatcaaagcacattcatcctatatagcaaatggactcagcagatggcaaaaacttgcttacagtcacaacatgctggttatttctcggagagttgatcttattcttggacggaaaaaaaagtttttcacattattcaacattatcttttgagaaaattgttttagtcctgctgtagatttatggtctttatattagcagatagcacatttctgaagctaaaagagatgttctttactactaagcattagaattttttgtagccaaagtgtacacttttcatgcatttgtttaactacttccattttatttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="+" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="101963" stop="105145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102263" g_stop="102283" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102284" i_stop="102413" i_length="130">
            <donor d_prob="0.228" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102414" g_stop="102498" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="106" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102499" i_stop="103310" i_length="812">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103311" g_stop="103355" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="151" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103356" i_stop="103727" i_length="372">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103728" g_stop="103796" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="220" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103797" i_stop="104405" i_length="609">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104406" g_stop="104845" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="660" r_length="440" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="+" ref_id="SGN-U344267" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344267" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102263" e_stop="102283"/>
          <exon e_start="102414" e_stop="102498"/>
          <exon e_start="103311" e_stop="103355"/>
          <exon e_start="103728" e_stop="103796"/>
          <exon e_start="104406" e_stop="104845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGGCTTGATTTCCTCTGTCGGTGTTTCCATGCCTCCTTTTATCTTCCCCTCTTTCTCCTTTCCTTTTTTACCTAACTATCTTTTATGTTGTACATCTGGAACTTAGACTAATTGCAATTTATACTGACACACTTGTTCATATATAGGTGGGAAATTTGAAAGCTCCAGTTGAAGACTGGACGGTCGGTGGAACAGCACTAACATCTTTGATGGATGTCGAAAGGAGACATGGTATTAACCTCCTTTCTCTCTTGTTCATTGAATATGGTGTTATGGTGTATTCTCCCTATTGATAAGCAAAAGTCTTAGAACTGCAAAGTGCCTAATTTTCTGTTCAGACTCTTGCTCTTTTGTTTGAATTATTTTAGCTGAATCCCTTAATGCTAAAAGAAACTATTCGGATTTTTCTATTCTGAAGCATCTACTTAGTCATTTATAGAATATATTCAGGCAATAGTCAACTAAGGACAAGTGCCTTTCTTAGTCTTCCAGTGTATATGAAAACCATTTTCCAAAACAAAGCAAAAGAAAAACTGAATTGACAAGGAACAGCCAAATGTTTGCACAAGTAATTATAATAACGGAAAAGTACCTTGCTTACATCATATGAATGATTCACACTTCAGAGATTCTGTGTTTGAGCCTTAGGAGGGATTGACATGCCTCGTTTATATGATGATCCATAACAAATTTATATACACAAGCACTTAGAGTGTTAAGAGATATATTTAATTAGTGTAGTATTTAGCTCGATGACATTATGAGCCTCTCAGTACGAGTAGATCTAGGATGTAGAATCAGCAATTCAAGTTCTCAAAGCTAGTTTGAGTAGCTTCCACTATAGCCACTGGTCATTTGAAGCTGAGGGTTCGATTCTCTTAACAAGTACCAATGATCCAGGGATTTTCAGATATATATACAAGTTCAGAGCGAAAAGTAGTGGTCCTACATAGACCACTAGGTCCGCCCTCGCCTTCCAGACCTGTCATGTTTTGGCTAAGATTCCATGCTATAAATGTGATGAAGTGATCAAACTTTTGCAGGTAAGTTCAAGCCTGTGATTAAGAAGGCAATGGTGGAACTAGAAGGTAAAAGCTCCATAGCACTATGAATACAGGCTATGGTTATTTACTACTCCCTCTATTCCATATTAACTGAATTTTTAAGGCAATGTACACATTAAAAAAAACATTCAAGGACATAATTTAAACCATAATTTCCACTATTACCCTTTGTAAAATCATAAATACAACTTTATAAGTAGTGTAATTTATCTCCTAGAAAATGTAAAACTTGAATAAATGAAAGGGCAAATATTAAGAAGATTTCAAACATCCATCTTGAACAATGAAGAAAGCCTAAAAATTCATTCAATATGGAATTGAGGGAGTATTTTTTAGTATAATCCGTTCTGCTGTAACTTTTGGGTAGTTAAAGCCTCACAATTGTTCAACTCACAGGTGCTCCTTTCAAAAAATTTGCTTCCTTGCGAGAAGAGTGGGCTCTAAAGAATCGATACTTCAGCCCTGGTATATCTTTATTATTGTTTGTAGAAACGTGTTAAGTTCTTCTTATTCAATACTTAAATTTTAACCTTTAAAAGCATGCACTAGCCACAACGTTGAGATTTTTTTCCCACATACAGAGCTAATTAGGCTATTGATATCCTTGTTAATTTGAAATTGTGGTTGTGTGGTATCATTTTTCATCTGGAACAAATCTTTATTGGGTATGGTTGCCAATATACCCTCCTCACTGATACACCTGCCTCCCAAGTAACATATTTGCTGTAATGAACCGTCATTGAGTACATCAAGTGATAAAACATAATGATGTTAGCAAATCATACATCTGATTATCCTGTTGACACACCTTTTTTCTTCTACAACTAAGGAACACTCCATCTAAAAGAATATCTCTGTCCATGCAAGGTAGGAGTAAGGTTTGCGTACACTCTCAAACATCACTTGAGCTATTACACTGGCTATGTTGTAGTTGCAACCAAAGAACATTGTTTCCAGCAACGCTCCCCTGTTTACACATTTTTTATTTAGGATGATTTGTAAGTTCTGCATAGGTGTTCGATGGCTTGTGTTCATTGTGTGCTTATTTTTTCTTGTTTATGTACTTGCGAGCAGGTCCACTTCAATTTGTTGGCCCAACATCAAATGAAACCAATCACACTTTAATGCTGGAGTTGGGAGCCAAAGCTTAATTGATTCCCAAATCTGAACTCGAACTTCTGTTCCTTTGACATTTTCATCAAAGCACATTCATCCTATATAGCAAATGGACTCAGCAGATGGCAAAAACTTGCTTACAGTCACAACATGCTGGTTATTTCTCGGAGAGTTGATCTTATTCTTGGACGGAAAAAAAAGTTTTTCACATTATTCAACATTATCTTTTGAGAAAATTGTTTTAGTCCTGCTGTAGATTTATGGTCTTTATATTAGCAGATAGCACATTTCTGAAGCTAAAAGAGATGTTCTTTACTACTAAGCATTAGAATTTTTTGTAGCCAAAGTGTACACTTTTCATGCATTTGTTTAACTACTTCCATTTTCTTTCAAAATAA</genome_strand>
        <mrna_strand>AAAACAGGCTTGATTTCCTCT..................................................................................................................................GTGGGAAATTTGAAAGCTCCAGTTGAAGACTGGACGGTCGGTGGAACAGCACTAACATCTTTGATGGATGTCGAAAGGAGACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTTCAAGCCTGTGATTAAGAAGGCAATGGTGGAACTAGAAG....................................................................................................................................................................................................................................................................................................................................................................................GTGCTCCTTTCAAAAAATTTGCTTCCTTGCGAGAAGAGTGGGCTCTAAAGAATCGATACTTCAGCCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACTTCAATTTGTTGGCCCAACATCAAATGAAACCAATCACACTTTAATGCTGGAGTTGGGAGCCAAAGCTTAATTGATTCCCAAATCTGAACTCGAACTTCTGTTCCTTTGACATTTTCATCAAAGCACATTCATCCTATATAGCAAATGGACTCAGCAGATGGCAAAAACTTGCTTACAGTCACAACATGCTGGTTATTTCTCGGAGAGTTGATCTTATTCTTGGACGGAAAAAAAAGTTTTTCACATTATTCAACATTATCTTTTGAGAAAATTGTTTTAGTCCTGCTGTAGATTTATGGTCTTTATATTAGCAGATAGCACATTTCTGAAGCTAAAAGAGATGTTCTTTACTACTAAGCATTAGAATTTTTTGTAGCCAAAGTGTACACTTTTCATGCATTTGTTTAACTACTTCCATTTTATTTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325953" ref_strand="+" ref_description="SGN-U325953        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | UBX domain-containing protein, similar to XY40 protein (Rattus norvegicus) GI:2547025; contains Pfam profile PF00789: UBX domain | chr4:2030348-2031850 FORWARD | Aliases: T27D20.10, T27D20_10(evalue: 1e-100, score=363) genbank/nr: gi|13123659|gb|AAK12936.1| phosphatase-like protein Psc923 [Pisum sativum](evalue: 2e-109, score=399)">
      <seq>gaagacgaacaagtatcagaattcagcaaaaatggaaaatcaggcaaatctcgccgccgacgcacaaagagaagaacttgtcaacacattctgtgagattacttctgcttctaaacctgaagcccttttcttccttgaaagccataacttcgatttggatgctgctgtttccaccttcttcgagaacaacacctttaactccgcctctgctgctgccgttgatgacggcgatcaagctccaatccatgcttccgccgccactcatgttgctgctgcgcaaggccgttctccgtcgcgctcgcgatctccttctccacctcgacctagaaaccctccaacttctagccgcggcgctgctgggaggagaactggtggaattcactctttttctgatctgaatcgtcgtcctgttactgggtctgggagtgactccgatgagcctcaagagtattatactggcggagagaaaagcggaatgcttgttcaagatccatctaaggcaaatgatgtgaactcaatattcgatcaagctagacaacatgcaactgttgaaggacctccagcatcatctggctctagaagctttattggaactgctagaagacttacgggtgagactgtgtctgctgctcctcagccacctgagagtgttactcataccatcactttctggaccaatgggttcactattgatgatggacccttgcggaggtttgatgatccagaaaatgcccctttcttagagagtatccggaagtctgagtgcccaaaagaacttgagccagaagacaggaggacgtctgtccgagttaatctgacaaggagagaggaggactgccctgtaccagagaagcgccgtgcattatttcagggtgtgggaagaactttaggtagcactagcaatgctgaacaagtagactcaactgctactatctcatcattcaccgcagctccatccccatcagtgggcctagttgttgatcagtcacagccctcaacctcaattcaactaaggttggcagatggtacacgaatggtttctcggtttaactaccaacacacaatcagggatattcgagggtttattgatgcatcaaggcctggtgggtcaaggaattatcaactgcagacagtgggctttcctcccaaacaactctctgatctggaccagacggtagagcaagctggcctagccaattcagttgtgattcagaaactttaaagggttacgacttctgtgttatatctgctgcagttacacctagaaccatgctgatttcaatgctatctttaaactacacatacattcctaatcacatagataatgtttctcttggagcctactgatggaattattttttgaagttgagcaacattcagaaagttccttctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="+" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="108420" stop="112709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108720" g_stop="109190" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109191" i_stop="110124" i_length="934">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110125" g_stop="110398" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="745" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110399" i_stop="111669" i_length="1271">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111670" g_stop="111765" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="841" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111766" i_stop="111857" i_length="92">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111858" g_stop="112408" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="1392" r_length="551" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1393" polyA_stop="1411"/>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="+" ref_id="SGN-U325953" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1392</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108720" e_stop="109190"/>
          <exon e_start="110125" e_stop="110398"/>
          <exon e_start="111670" e_stop="111765"/>
          <exon e_start="111858" e_stop="112408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGAACAAGTATCAGAATTCAGCAAAAATGGAAAATCAGGCAAATCTCGCCGCCGACGCACAAAGAGAAGAACTTGTCAACACATTCTGTGAGATTACTTCTGCTTCTAAACCTGAAGCCCTTTTCTTCCTTGAAAGCCATAACTTCGATTTGGATGCTGCTGTTTCCACCTTCTTCGAGAACAACACCTTTAACTCCGCCTCTGCTGCTGCCGTTGATGACGGCGATCAAGCTCCAATCCATGCTTCCGCCGCCACTCATGTTGCTGCTGCGCAAGGCCGTTCTCCGTCGCGCTCGCGATCTCCTTCTCCACCTCGACCTAGAAACCCTCCAACTTCTAGCCGCGGCGCTGCTGGGAGGAGAACTGGTGGAATTCACTCTTTTTCTGATCTGAATCGTCGTCCTGTTACTGGGTCTGGGAGTGACTCCGATGAGCCTCAAGAGTATTATACTGGCGGAGAGAAAAGGTATAACTAGTGATAATAATGGTACTTTACTGTTGGCTTTGCATTGCTTCATTTATAAGTGTATTTAGTATTTAATTAAAGTATCGGCATTGATGTTCTATCATTGTTTTGTTGTCGAATTAGTATTGGCGGAAGTGTTTTTGAGTATACTAGTGGAGAAATTTGAGGGCTCTGATTAGACGAATATGTGAAAATAGTGATTTCAGTATGCTTATCATTCTTGTTTATTCTTAATTTAATTCTTGTACCTGATCAATTTGATCCTTTCACCAAGTACACACCATCTTCCTCACTATGTCACACCCTCGGGTGTGTTAATATGTGTATTTTGATATCACAATGTTGCATGATCTAGTTGCTTATCAATGTGACATGTTTGTGTGTTGCAATTTTGGCTGTCTAAGCCAATGGAGCCTTGACCTAGTATTTATGGAGGAGTTGCTTACAGTTGACACACTATCAGGTTCAAATTTTGTTGATGTATGGGGTCGAGTCGAACTTATGGATTCAATGTGTTTTCCCTAGTAGTTTGTCCTGAATGTTACCTGTTTTCACCATTTCGTGGTGTAAATATAGGAAATATTCCTATTGCTATCAATCTCACGATTCGAGTTTGGTCAGGTTTAAGGCTTTAATGATATGTTCATGTATTCAAGTATTTCTAAAATTGTTGGAATATGGAAAAAGTGCTCATCATCGAAAAGAAAACTAAACATCTGGTGCTTTATAAGAATTTGTTTCTGTTTCACCTAGATTGCATCATCCAATTCCTTATTCTGTTTATGTAAGATGGAGGAAACAAACATTGTAAATACATAATTCTTATTCTTGAGGTCTTCTGTTACATGGAGATGTACTTGAATATTTCGGACTTGTGTTGTAGAGACACAGTGTGCATTTTGGTTGTAATTTGCTTATCAAAACTTTTTTGTAGCGGAATGCTTGTTCAAGATCCATCTAAGGCAAATGATGTGAACTCAATATTCGATCAAGCTAGACAACATGCAACTGTTGAAGGACCTCCAGCATCATCTGGCTCTAGAAGCTTTATTGGAACTGCTAGAAGACTTACGGGTGAGACTGTGTCTGCTGCTCCTCAGCCACCTGAGAGTGTTACTCATACCATCACTTTCTGGACCAATGGGTTCACTATTGATGATGGACCCTTGCGGAGGTTTGATGATCCAGAAAATGCCCCTTTCTTAGAGGTAATGTCAGTCATGAGTTTTACCCTTCGATTGTTTACTTTATTTGCTCATCTTTCTGGTTCTACATTCACTACACATGTTCTCTTCAGCTGAGTCAACTAAACTTCCTTTTGTTAGAAAAGGTGTTCACAAAAATGTGTGACATTCTACTCTTTTTGTTGAAACTGTTGTGAAGAGTGTTATCAAAGGTGAAAACGCAAAAAAGCTCAAAGGTGCATTGGGGCTTTTAGCACTAATGAAGAAAGTCGCAAATGGAGGAAAAAATAAAAATATGTATGTGTTAAAGGATTAAAGAAGCATGTTATAGGTTGGAAAAATAGTGGGTTTTAGGTTATGTTGTTTCTCCTATTCTTCGTCGGCTATAAAGCTACTTCCTGTAGCTATGGGTGACAACTGAATGGATGGTGTCTTTCTACTAAGGCAATAACTCCCTCCCTCGAATACTTTGTTTGCTTTTGAATGCTTCAGAGTCAGACCTCTAGTTACATAACTGTTATGATCCTAATCGGGTTGCCCAATATTCAACCTCGGTTTAAAGTTAGCGACTATCTCTAAAAGGTACTAACTTAACTCTTCTCTGAAAGGTAAATTTTGAATCAAAGTAACAAGCTAGTACATGCTTAGAACATACCACCCAAGTATTCTGATGTGTATCGAAGGTAATCTCGTCCAAGGTAGTGAATTTGAAGCTAGTTTGTGCCTATAATATTGAATTTTCTTGGATATCCATTATCTTTCACTGGAAGGAACTGAGAATCTAAATCTGAAGTCTTCTTAGGCGCTCCTTAGAAACATATGGAAAACCATATGTTGTGTTCAAGGTCAAATCCTGAAACGGTTTTGCATCTTGCATGTTTATGGTCGTTTATGTTGTTGACAATTTCCCCCCATCTTTGCATTGGCAACAATTAAGGACATAATATGAAATAAAGATTATTCTTTCCTTTTTGGTGACTGGTTGTTGAACACTTGAACTTAATAAGTTGAATTAAAACTCTTTAGTCTTACTCCCTTTTCTTTTGCGTAGTGCACTAAAACCTGATACTCCATTGTAACTATTTTTCACGTGACTGTTTCCCTGAAGTAATTTCATGCTGTCGGAATTGGAATCATATTAACTCCTATTTATTCATTATCTATACCACGCCAGATGTTCTATGGATACAATTATTAGGCAGAACCACCAATGACTTTTGCTGGTTTATGCTTTTCCTATGTTGTGTTTTTCTTTCTCCACACTTGCTCTTAATATTTTTGTATGTGTAATGCAGAGTATCCGGAAGTCTGAGTGCCCAAAAGAACTTGAGCCAGAAGACAGGAGGACGTCTGTCCGAGTTAATCTGACAAGGAGAGAGGAGGACTGCCCTGTACGTCCTTATTTTTCTCTATTACCAAAGGCTCTCAATTATGCTTCTAAAACCTTTGCCCTTCATGGTAACACTCTTTTCTTTTTTTGCAGGTACCAGAGAAGCGCCGTGCATTATTTCAGGGTGTGGGAAGAACTTTAGGTAGCACTAGCAATGCTGAACAAGTAGACTCAACTGCTACTATCTCATCATTCACCGCAGCTCCATCCCCATCAGTGGGCCTAGTTGTTGATCAGTCACAGCCCTCAACCTCAATTCAACTAAGGTTGGCAGATGGTACACGAATGGTTTCTCGGTTTAACTACCAACACACAATCAGGGATATTCGAGGGTTTATTGATGCATCAAGGCCTGGTGGGTCAAGGAATTATCAACTGCAGACAGTGGGCTTTCCTCCCAAACAACTCTCTGATCTGGACCAGACGGTAGAGCAAGCTGGCCTAGCCAATTCAGTTGTGATTCAGAAACTTTAGAGGGTTACGACTTCTGTGTTATATCTGCTGCAGTTACACCTAGAACCATGCTGATTTCAATGCTATCTTTAAACTACACATACATTCCTAATCACATAGATAATGTTTCTCTTGGAGCCTACTGATGGAATTATTTTTTGAAGTTGAGCAACATTCAGAAAGTTCCTTCT</genome_strand>
        <mrna_strand>GAAGACGAACAAGTATCAGAATTCAGCAAAAATGGAAAATCAGGCAAATCTCGCCGCCGACGCACAAAGAGAAGAACTTGTCAACACATTCTGTGAGATTACTTCTGCTTCTAAACCTGAAGCCCTTTTCTTCCTTGAAAGCCATAACTTCGATTTGGATGCTGCTGTTTCCACCTTCTTCGAGAACAACACCTTTAACTCCGCCTCTGCTGCTGCCGTTGATGACGGCGATCAAGCTCCAATCCATGCTTCCGCCGCCACTCATGTTGCTGCTGCGCAAGGCCGTTCTCCGTCGCGCTCGCGATCTCCTTCTCCACCTCGACCTAGAAACCCTCCAACTTCTAGCCGCGGCGCTGCTGGGAGGAGAACTGGTGGAATTCACTCTTTTTCTGATCTGAATCGTCGTCCTGTTACTGGGTCTGGGAGTGACTCCGATGAGCCTCAAGAGTATTATACTGGCGGAGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAATGCTTGTTCAAGATCCATCTAAGGCAAATGATGTGAACTCAATATTCGATCAAGCTAGACAACATGCAACTGTTGAAGGACCTCCAGCATCATCTGGCTCTAGAAGCTTTATTGGAACTGCTAGAAGACTTACGGGTGAGACTGTGTCTGCTGCTCCTCAGCCACCTGAGAGTGTTACTCATACCATCACTTTCTGGACCAATGGGTTCACTATTGATGATGGACCCTTGCGGAGGTTTGATGATCCAGAAAATGCCCCTTTCTTAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCCGGAAGTCTGAGTGCCCAAAAGAACTTGAGCCAGAAGACAGGAGGACGTCTGTCCGAGTTAATCTGACAAGGAGAGAGGAGGACTGCCCT............................................................................................GTACCAGAGAAGCGCCGTGCATTATTTCAGGGTGTGGGAAGAACTTTAGGTAGCACTAGCAATGCTGAACAAGTAGACTCAACTGCTACTATCTCATCATTCACCGCAGCTCCATCCCCATCAGTGGGCCTAGTTGTTGATCAGTCACAGCCCTCAACCTCAATTCAACTAAGGTTGGCAGATGGTACACGAATGGTTTCTCGGTTTAACTACCAACACACAATCAGGGATATTCGAGGGTTTATTGATGCATCAAGGCCTGGTGGGTCAAGGAATTATCAACTGCAGACAGTGGGCTTTCCTCCCAAACAACTCTCTGATCTGGACCAGACGGTAGAGCAAGCTGGCCTAGCCAATTCAGTTGTGATTCAGAAACTTTAAAGGGTTACGACTTCTGTGTTATATCTGCTGCAGTTACACCTAGAACCATGCTGATTTCAATGCTATCTTTAAACTACACATACATTCCTAATCACATAGATAATGTTTCTCTTGGAGCCTACTGATGGAATTATTTTTTGAAGTTGAGCAACATTCAGAAAGTTCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313332" ref_strand="+" ref_description="SGN-U313332        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: AT1G05260.1 | Symbol: None | peroxidase 3 (PER3) (P3) / rare cold-inducible protein (RCI3A) (PRC), identical to SP:O23044 Peroxidase 3 precursor (EC 1.11.1.7) (Atperox P3) (Rare cold inducible protein) (RCI3A) (ATPRC) {Arabidopsis thalliana} | chr1:1529767-1531438 FORWARD | Aliases: YUP8H12.13, YUP8H12_13 (evalue: 5e-127, score=451) genbank/nr: gi|295355|gb|AAA65636.1| peroxidase (evalue: 1e-176, score=622)">
      <seq>gcagctctttcaaaagttgccaaagaagtataaatggctaaatttggtgatttgagtaactttctagtgttgtgtattctagtaggaatagcgggttctagctatggtcagttgcagcttaacttctatgcaaagagctgtccgcaagcagaaaagataattcaagattatgtgtataagcaaatcccaaaggctccatctcttgcagctgcgttgctcagaatgcatttccacgattgctttgtcaggggttgtgatggttctgtactcctgaacttcacttcgagcactaaaaaccagactgaaaaagtagcagttcctaatcaaacgctgagaggcttctcattcatcgatggtgtgaagaaagcagtagaagctgagtgccctggagttgtctcttgtgcggatattgttgccttggttgctagagactctgttgtggtcacaggaggcccttactggaaggttccaactggtagaagagatgggagaatatcaaacgcctcggaagccttggcaaacatccctcctccgacaagtaacttttccagtctccagacgtcttttgccagcaagggtcttgacctaaaagacttggtactattgtctggtgcacataccattggagtctctcactgtccgtcattttcatcacgtttatacaattttactggagtttggggtaaaaaagatccatctctagacagcgaatatgcagctattcttaagatgaagaaatgcaaatccatcaatgacaacaccacaattgtcgaaatggatcctggaagctccagtaaatttgatcttagctacttccagcttgtgctcaagagaagagggctattccaatctgatgcagccttgacaacaagtgcgacaacaaagtcattcatcaaccagttagtacaaggatcactggaacaattctatgccgagtttggtgtagcaatggagaaaatgggaaagattgaggtcaagaccggctctgctggtgagattaggaagcactgtgcagttgtgaatagttaagagctgtctttttcccaaattccaatattcgtgtgttcgtattttgtatgtaatctctgtgtgaatgattcgggataacatgtatcatttctttttgtagttattccgatatgatcgttttcttgaaataaagctaagattccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="-" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="119535" stop="117494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119228" g_stop="118978" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118977" i_stop="118899" i_length="79">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118898" g_stop="118701" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="447" r_length="198" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118700" i_stop="118629" i_length="72">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118628" g_stop="118466" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="610" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118465" i_stop="118363" i_length="103">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118362" g_stop="117792" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="1181" r_length="571" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="-" ref_id="SGN-U313332" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>1183</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119228" e_stop="118978"/>
          <exon e_start="118898" e_stop="118701"/>
          <exon e_start="118628" e_stop="118466"/>
          <exon e_start="118362" e_stop="117792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGTTGCAAAAATAAGTAATAAGTAATATAAATGGCTAAATTTGGCGATTTGGGTAATCTTCTAGTGTTGTGTATACTACTAGGAATAGTTGGTTCTAGCTATGGTCAGTTGCAGCTCAACTTCTATGCAAAGAGCTGTCCGCAAGCAGAAAAGATAATTCAAGATTATGTGTATAAGCAAATCCCAAAGGCTCCGTCTCTTGCACCTGCGTTGCTCAGAATGCATTTCCACGATTGCTTTGTCAGGGCAAGTATATACCTCATTTTATGAAGAGTGCAGTTCTTAAAGTGATAATTCTGATTTTATTTTATTGGGTTCTTAACAGGGTTGTGATGGTTCTGTACTCCTGAATTTCACTTCGAGCACTAAAAACCAGACTGAAAAAGTGGCTGTTCCTAATCAAACGCTGAGAGGCTTCTCATTTATCGATGGTGTGAAGAAAGCATTGGAAGCTGAATGCCCTGGAGTTGTGTCATGTGCGGATATTGTTGCCTTGGTTGCTAGAGACTCTGTTGTGGTCACAGTAAGTACAAAACTCTTAACCATATTGCGGGCTGAAAAATATGTTCCTAATCTTGTCTTCCTTTTTATGCAGGGAGGCCCTTACTGGAAGGTTCCAACTGGTAGAAGAGATGGAAGAATATCAAACGCCTCGGAAGCCTTGGCAAACATCCCTCCTCCGACAAGTAACTTTTCCAGTCTCCAGACGTCTTTTGCCAGCAAGGGTCTTGACCTAAAAGACTTGGTACTATTGTCTGGTAAGTTTAAATTAGTACATCCGCGCTCATTTCTGCTTATCCTATGTTAAAACTTTCCATACTCTCACAAAAATCATTGTTACTATGTACAATTTTCTATTAGGTGCACATACCATTGGAGTCTCTCACTGTCCGTCATTTTCATCACGTTTATACAATTTTACTGGAGTTTGGGGTAAAAAAGATCCATCTCTAGACAGCGAATATGCAGCTATTCTTAAGATGAAGAAATGCAAATCCATCAATGACAACACCACAATTGTCGAAATGGATCCTGGAAGCTCCAGTAAATTTGATCTTAGCTACTTCCAGCTTGTGCTCAAGAGAAGAGGGCTATTCCAATCTGATGCAGCCTTGACAACAAGTGCGACAACAAAGTCATTCATCAACCAGTTAGTACAAGGATCACTGGAACAATTCTATGCCGAGTTTGGTGTAGCAATGGAGAAAATGGGAAAGATTGAGGTCAAGACCGGCTCTGCTGGTGAGATTAGGAAGCACTGTGCAGTTGTGAATAGTTAAGAGCTGTCTTTTTCCCAAATTCCAATATTCGTGTGTTCGTATTTTGTATGTAATCTCTGTGTGAATGATTCGGGATAACATGTATCATTTCTTTTTGTAGTTATTCCGATATGATCGTTTTCTTGAAATAAAGCTAAGATTCCAAGAAGAGC</genome_strand>
        <mrna_strand>GCAGCTCTTTCAAAAGT-TGCCA-AAGAAGTATAAATGGCTAAATTTGGTGATTTGAGTAACTTTCTAGTGTTGTGTATTCTAGTAGGAATAGCGGGTTCTAGCTATGGTCAGTTGCAGCTTAACTTCTATGCAAAGAGCTGTCCGCAAGCAGAAAAGATAATTCAAGATTATGTGTATAAGCAAATCCCAAAGGCTCCATCTCTTGCAGCTGCGTTGCTCAGAATGCATTTCCACGATTGCTTTGTCAGG...............................................................................GGTTGTGATGGTTCTGTACTCCTGAACTTCACTTCGAGCACTAAAAACCAGACTGAAAAAGTAGCAGTTCCTAATCAAACGCTGAGAGGCTTCTCATTCATCGATGGTGTGAAGAAAGCAGTAGAAGCTGAGTGCCCTGGAGTTGTCTCTTGTGCGGATATTGTTGCCTTGGTTGCTAGAGACTCTGTTGTGGTCACA........................................................................GGAGGCCCTTACTGGAAGGTTCCAACTGGTAGAAGAGATGGGAGAATATCAAACGCCTCGGAAGCCTTGGCAAACATCCCTCCTCCGACAAGTAACTTTTCCAGTCTCCAGACGTCTTTTGCCAGCAAGGGTCTTGACCTAAAAGACTTGGTACTATTGTCTG.......................................................................................................GTGCACATACCATTGGAGTCTCTCACTGTCCGTCATTTTCATCACGTTTATACAATTTTACTGGAGTTTGGGGTAAAAAAGATCCATCTCTAGACAGCGAATATGCAGCTATTCTTAAGATGAAGAAATGCAAATCCATCAATGACAACACCACAATTGTCGAAATGGATCCTGGAAGCTCCAGTAAATTTGATCTTAGCTACTTCCAGCTTGTGCTCAAGAGAAGAGGGCTATTCCAATCTGATGCAGCCTTGACAACAAGTGCGACAACAAAGTCATTCATCAACCAGTTAGTACAAGGATCACTGGAACAATTCTATGCCGAGTTTGGTGTAGCAATGGAGAAAATGGGAAAGATTGAGGTCAAGACCGGCTCTGCTGGTGAGATTAGGAAGCACTGTGCAGTTGTGAATAGTTAAGAGCTGTCTTTTTCCCAAATTCCAATATTCGTGTGTTCGTATTTTGTATGTAATCTCTGTGTGAATGATTCGGGATAACATGTATCATTTCTTTTTGTAGTTATTCCGATATGATCGTTTTCTTGAAATAAAGCTAAGATTCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334284" ref_strand="+" ref_description="SGN-U334284        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G05260.1 | Symbol: None | peroxidase 3 (PER3) (P3) / rare cold-inducible protein (RCI3A) (PRC), identical to SP:O23044 Peroxidase 3 precursor (EC 1.11.1.7) (Atperox P3) (Rare cold inducible protein) (RCI3A) (ATPRC) {Arabidopsis thalliana} | chr1:1529767-1531438 FORWARD | Aliases: YUP8H12.13, YUP8H12_13 (evalue: 7e-124, score=440) genbank/nr: gi|295355|gb|AAA65636.1| peroxidase (evalue: 0, score=654)">
      <seq>taaatggctaaatttggtgatttgagtaactttctagtgttgtgtattctagtaggaatagcgggttctagctatggtcagttgcagcttaacttctatgcaaagagctgtccgcaagcagaaaagataattcaagattatgtgtataagcaaatcccaaacgctccatctcttgcagctgcattgctcagaatgcatttccacgattgctttgtcaggggttgtgatggttctgtactcctgaacttcacttcgagcactaaaaaccagactgaaaaagtagcagttcctaatcaaacgctgagaggcttctcattcattgatggtgtgaagaaagcagtagaagctgagtgccctggagttgtctcttgtgcggatattgttgccttggttgctagagactctgttgtggtcacgggaggcccttactggaaggttccaactggtagaagagatggggagatatcaaacgcctcggaagccttggcaaacatccctcctccgacaagtaacttttccagtctccagacgtcttttgccagcaagggtcttgacctaaaagacttggtactattgtctggtgcacataccattggagtctctcattgcccgtcattttcatcacgtttatacaattttactggagtttggggcaaaaagtcctctctagacagcgaatatgcagctaatcttaagatgaagaaatgcaaatccatcaatgacaacaccacaattgtcgaaatggatcctgaaagttccagtaaatttgatcttagctacttccagcttgtgctcagaagaaaagggctgttccaatctgatgcagccttgacaacaagtgcgacaacaaagtcattcatcaaccagctagtacaaggatcagtgaaacaattctatgccgaaccgggagcaatggagaaaatgggaaagattgaagtgaagaccggctctgctggtgagattaggaagcactgtgcagctgtgaatagttaagagctagctttcttttccctttgttcccaacttccaatattcgtgtgtttgtattttgtatgtaacctttgtgtgaatgattcgcgataacatccatcatttctttttgtgcttattcttgtatattggtggtttctcttgaaatattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="-" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="119496" stop="117538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119196" g_stop="118978" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118977" i_stop="118899" i_length="79">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118898" g_stop="118701" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="417" r_length="198" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118700" i_stop="118629" i_length="72">
            <donor d_prob="0.928" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118628" g_stop="118466" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="580" r_length="163" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118465" i_stop="118363" i_length="103">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118362" g_stop="117863" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="1086" r_length="506" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="-" ref_id="SGN-U334284" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>1080</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119196" e_stop="118978"/>
          <exon e_start="118898" e_stop="118701"/>
          <exon e_start="118628" e_stop="118466"/>
          <exon e_start="118362" e_stop="117863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGGCTAAATTTGGCGATTTGGGTAATCTTCTAGTGTTGTGTATACTACTAGGAATAGTTGGTTCTAGCTATGGTCAGTTGCAGCTCAACTTCTATGCAAAGAGCTGTCCGCAAGCAGAAAAGATAATTCAAGATTATGTGTATAAGCAAATCCCAAAGGCTCCGTCTCTTGCACCTGCGTTGCTCAGAATGCATTTCCACGATTGCTTTGTCAGGGCAAGTATATACCTCATTTTATGAAGAGTGCAGTTCTTAAAGTGATAATTCTGATTTTATTTTATTGGGTTCTTAACAGGGTTGTGATGGTTCTGTACTCCTGAATTTCACTTCGAGCACTAAAAACCAGACTGAAAAAGTGGCTGTTCCTAATCAAACGCTGAGAGGCTTCTCATTTATCGATGGTGTGAAGAAAGCATTGGAAGCTGAATGCCCTGGAGTTGTGTCATGTGCGGATATTGTTGCCTTGGTTGCTAGAGACTCTGTTGTGGTCACAGTAAGTACAAAACTCTTAACCATATTGCGGGCTGAAAAATATGTTCCTAATCTTGTCTTCCTTTTTATGCAGGGAGGCCCTTACTGGAAGGTTCCAACTGGTAGAAGAGATGGAAGAATATCAAACGCCTCGGAAGCCTTGGCAAACATCCCTCCTCCGACAAGTAACTTTTCCAGTCTCCAGACGTCTTTTGCCAGCAAGGGTCTTGACCTAAAAGACTTGGTACTATTGTCTGGTAAGTTTAAATTAGTACATCCGCGCTCATTTCTGCTTATCCTATGTTAAAACTTTCCATACTCTCACAAAAATCATTGTTACTATGTACAATTTTCTATTAGGTGCACATACCATTGGAGTCTCTCACTGTCCGTCATTTTCATCACGTTTATACAATTTTACTGGAGTTTGGGGTAAAAAAGATCCATCTCTAGACAGCGAATATGCAGCTATTCTTAAGATGAAGAAATGCAAATCCATCAATGACAACACCACAATTGTCGAAATGGATCCTGGAAGCTCCAGTAAATTTGATCTTAGCTACTTCCAGCTTGTGCTCAAGAGAAGAGGGCTATTCCAATCTGATGCAGCCTTGACAACAAGTGCGACAACAAAGTCATTCATCAACCAGTTAGTACAAGGATCACTGGAACAATTCTATGCCGAGTTTGGTGTAGCAATGGAGAAAATGGGAAAGATTGAGGTCAAGACCGGCTCTGCTGGTGAGATTAGGAAGCACTGTGCAGTTGTGAATAGTTAAGAGCT-G--------T--CTTT-TTCCCAAATTCCAATATTCGTGTGTTCGTATTTTGTATGTAATCTCTGTGTGAATGATTCGGGATAACAT</genome_strand>
        <mrna_strand>TAAATGGCTAAATTTGGTGATTTGAGTAACTTTCTAGTGTTGTGTATTCTAGTAGGAATAGCGGGTTCTAGCTATGGTCAGTTGCAGCTTAACTTCTATGCAAAGAGCTGTCCGCAAGCAGAAAAGATAATTCAAGATTATGTGTATAAGCAAATCCCAAACGCTCCATCTCTTGCAGCTGCATTGCTCAGAATGCATTTCCACGATTGCTTTGTCAGG...............................................................................GGTTGTGATGGTTCTGTACTCCTGAACTTCACTTCGAGCACTAAAAACCAGACTGAAAAAGTAGCAGTTCCTAATCAAACGCTGAGAGGCTTCTCATTCATTGATGGTGTGAAGAAAGCAGTAGAAGCTGAGTGCCCTGGAGTTGTCTCTTGTGCGGATATTGTTGCCTTGGTTGCTAGAGACTCTGTTGTGGTCACG........................................................................GGAGGCCCTTACTGGAAGGTTCCAACTGGTAGAAGAGATGGGGAGATATCAAACGCCTCGGAAGCCTTGGCAAACATCCCTCCTCCGACAAGTAACTTTTCCAGTCTCCAGACGTCTTTTGCCAGCAAGGGTCTTGACCTAAAAGACTTGGTACTATTGTCTG.......................................................................................................GTGCACATACCATTGGAGTCTCTCATTGCCCGTCATTTTCATCACGTTTATACAATTTTACTGGAGTTTGGGG-CAAAAAG-TCC-TCTCTAGACAGCGAATATGCAGCTAATCTTAAGATGAAGAAATGCAAATCCATCAATGACAACACCACAATTGTCGAAATGGATCCTGAAAGTTCCAGTAAATTTGATCTTAGCTACTTCCAGCTTGTGCTCAGAAGAAAAGGGCTGTTCCAATCTGATGCAGCCTTGACAACAAGTGCGACAACAAAGTCATTCATCAACCAGCTAGTACAAGGATCAGTGAAACAATTCTATGCCGA-ACCGG-G-AGCAATGGAGAAAATGGGAAAGATTGAAGTGAAGACCGGCTCTGCTGGTGAGATTAGGAAGCACTGTGCAGCTGTGAATAGTTAAGAGCTAGCTTTCTTTTCCCTTTGTTCCCAACTTCCAATATTCGTGTGTTTGTATTTTGTATGTAACCTTTGTGTGAATGATTCGCGATAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334283" ref_strand="+" ref_description="SGN-U334283        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G05260.1 | Symbol: None | peroxidase 3 (PER3) (P3) / rare cold-inducible protein (RCI3A) (PRC), identical to SP:O23044 Peroxidase 3 precursor (EC 1.11.1.7) (Atperox P3) (Rare cold inducible protein) (RCI3A) (ATPRC) {Arabidopsis thalliana} | chr1:1529767-1531438 FORWARD | Aliases: YUP8H12.13, YUP8H12_13 (evalue: 1e-90, score=290) genbank/nr: gi|295355|gb|AAA65636.1| peroxidase (evalue: 8e-123, score=395)">
      <seq>aaaaatatctctttcaaaagttgcaaaaataagtaataagtaatataaatggctaaatttggcgatttgggtaatcttctagtgttgtgtatactactaggaatagttggttctagctatggtcagttgcagctcaacttctatgcaaagagctgtccgcaagcagaaaagataattcaagattatgtgtataagcaaatcccaaaggctccgtctcttgcacctgcgttgctcagaatgcatttccacgattgctttgtcaggggttgtgatggttctgtactcctgaatttcacttcgagcactaaaaaccagactgaaaaagtggctgttcctaatcaaacgctgagaggcttctcatttatcgatggtgtgaagaaagcattggaagctgaatgccctggagttgtgtcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="-" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="119541" stop="118446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119241" g_stop="118978" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118977" i_stop="118899" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118898" g_stop="118746" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="417" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="-" ref_id="SGN-U334283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119241" e_stop="118978"/>
          <exon e_start="118898" e_stop="118746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATCTCTTTCAAAAGTTGCAAAAATAAGTAATAAGTAATATAAATGGCTAAATTTGGCGATTTGGGTAATCTTCTAGTGTTGTGTATACTACTAGGAATAGTTGGTTCTAGCTATGGTCAGTTGCAGCTCAACTTCTATGCAAAGAGCTGTCCGCAAGCAGAAAAGATAATTCAAGATTATGTGTATAAGCAAATCCCAAAGGCTCCGTCTCTTGCACCTGCGTTGCTCAGAATGCATTTCCACGATTGCTTTGTCAGGGCAAGTATATACCTCATTTTATGAAGAGTGCAGTTCTTAAAGTGATAATTCTGATTTTATTTTATTGGGTTCTTAACAGGGTTGTGATGGTTCTGTACTCCTGAATTTCACTTCGAGCACTAAAAACCAGACTGAAAAAGTGGCTGTTCCTAATCAAACGCTGAGAGGCTTCTCATTTATCGATGGTGTGAAGAAAGCATTGGAAGCTGAATGCCCTGGAGTTGTGTCATGT</genome_strand>
        <mrna_strand>AAAAATATCTCTTTCAAAAGTTGCAAAAATAAGTAATAAGTAATATAAATGGCTAAATTTGGCGATTTGGGTAATCTTCTAGTGTTGTGTATACTACTAGGAATAGTTGGTTCTAGCTATGGTCAGTTGCAGCTCAACTTCTATGCAAAGAGCTGTCCGCAAGCAGAAAAGATAATTCAAGATTATGTGTATAAGCAAATCCCAAAGGCTCCGTCTCTTGCACCTGCGTTGCTCAGAATGCATTTCCACGATTGCTTTGTCAGG...............................................................................GGTTGTGATGGTTCTGTACTCCTGAATTTCACTTCGAGCACTAAAAACCAGACTGAAAAAGTGGCTGTTCCTAATCAAACGCTGAGAGGCTTCTCATTTATCGATGGTGTGAAGAAAGCATTGGAAGCTGAATGCCCTGGAGTTGTGTCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321969" ref_strand="+" ref_description="SGN-U321969        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:13679327-13680293 REVERSE | Aliases: F22D22.7, F22D22_7(evalue: 4e-48, score=188) genbank/nr: gi|21592432|gb|AAM64383.1| unknown [Arabidopsis thaliana](evalue: 2e-46, score=189)">
      <seq>tcaaaacactttactctgttcttcaagggttttagaaccaatcttccaatcctctgcttcatcttgctttttgcttctacaaaatctaaaacgaaaactgccgaggctgactcatttttcttgtgatagcaatacaaatatcgagggtgtcgtatggcgagtctcataactatgcctgctttaagccacttatccaccaacactatcagcctagaacgaagaaatttatgtgcatcctccaggagacgtcgaggagttagggcaatgatgacagaaaaaccactggaggagctgtatcatgtgagagtagagagaaatgtgacaaaagatcgactaatggagcttggtgttcaacgatggtcaatgtggaaaaccggcaaatgcaagttaccttgggattggcatgtagaccagttggtttacattgaagaaggtgaggtaagggttgtacctgaaggaagcaaaagatttatgcagtttgtagcaggcgaccttgtccgctatccaaaatggtttgaagctgatctctactttaatgacttctaccaagagcgatatagatttcaagcatatggagatgactagtgaatcaatttcctacaactaggctcttaattcccgggcttctagttactgcacttgctagttatctgtttcataagcatatttagattgctgttgtaatacaaatggtagaacatggtctttctaaatggtaaggtggccagataacattcaatccattagtggtacgaatgatttatcttttcaccggccaattccgacatagatcttgactacaatcttccgtcatctcctctctggatgataaacgttttttttttcggcccccagttagtaaaaaaaatactgcaacctgtttcttcatcatcattgttacattggaaaattgggtcggtatgtattgtcagttaaaataccaacactattgccatttatcagttactttgaaattgtttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="+" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="122261" stop="125224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122561" g_stop="122660" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122661" i_stop="124034" i_length="1374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124035" g_stop="124918" g_length="884"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="985" r_length="885" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="+" ref_id="SGN-U321969" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>984</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122561" e_stop="122660"/>
          <exon e_start="124035" e_stop="124918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACACTTTACTCTGTTCTTCAAGGGTTTTAGAACCAATCTTCCAATCCTCTGCTTCATCTTGCTTTTTGCTTCTACAAAATCTAAAACGAAAACTGGTAAGAATACATCTTCTATTAATTCTCTTTTAAATGGTAGATGCGTTCATTTCATGAATCGATTTTTAATTCTTCTAACATTATGTTTCTATTGAGTGGATGAATGTCATTTTGGTTGCCAATTTTTCTCCCTTTTCGTTTTTGTTCATAGCTTGGATAGATGGGAACCCTTTTCTGCATAAATGTTTCGATTCCAGTTTGTATGAAGTAAAGGTGCTTCACATGTATATTTTGCATTTATGGAGGATCAGTAGTTAAGTTGATAGAATTTATTTGAAATGTGATAAATGAAAAGTATAACAAGAATTGGTATTTTCCAAAAGGAGAAATGAGCACTTGAGCTGAGGCTCTTTTGGAAAGAGACTCTCTACCTCCGCCAGGTAGTACTCTCTACTTTCCCCACACACACCCACACTACAAGAAAAGTATGAATTACATTGAGATTTTCCTGAAAATCAGGATGAATTTTTGCAGGAAAATAAGTTTCCTACGTATTTTCATACTAATCCTAGGAAAATCCCATGTAATTCACAGTTTTCTTGTAGTGCCACTTGGTGTGATTTCATTGGATATGTTGTTGGTGGTGGTGGTGTCTTCCAAAATGAAAAGACTATGAGTATAAGAGGATGTGACAATTTTGTTGGAAGCGATTGTGAAATTCGGTAAATATTTCATGTTTGTGGTTGCTAGAACTGCTGCTGGAAACCTGAAACTCTACATATTTTTTTTTATGCGGTGCTTCCCAATGTGTCAGTTTGATACCGTCTGATGCTACGCAGCAAAATTGGTCTTGAATGGTCTATAACTTAAATTATCTCGTCTTCTTTTGGAAACAAAGAGACCAACCAATTTCTTTGCTCTTTCAAGAGAGCCTGAAATCAGTGGCCAACATCATATTATTGTGTCAAGAGTGTCGAGAATATATTGTTTATCCACTTTATTTATCATTTTACTTGTATCTACGGTATAATTTCCGACAAAGGGTGTCCAATTGGACACCTTGACATGAGTGTAGCTACGCCCAGGCAGTTAGTGTGTGTGTGTTTATATAACACTTGACTAAACAGATTTGAGATGGCTGCAGAACTTGCTATAAAATGTTCCAGATATGTGGTATTTGTTAGTTGGTAATACCTTCCTTAACCACAAATGAGAAAACTTGAAAGAAGTGCAAATTAGGGCTGTGAAAGTGCTTTTTTATTGAGATGTCTACTGGATGCATCATAATTCATATATCTTGCAAAATATTTGTGTGTTGTTGTGCGAGTAATTCTACATACCTGCTTTTCTCTCGGACATTGTTTTGAAGGATACACAGTGATTGCTTGTATTTAATTGATTTTCTTTGAACTAACTCCTGTTAACTTTTTGTAGCCGAGGCTGACTCATTTTTCTTGTGATAGCAATACAAATATCGAGGGTGTCGTATGGCGAGTCTCATAACTATGCCTGCTTTAAGCCACTTATCCACCAACACTATCAGCCTAGAACGAAGAAATTTATGTGCATCCTCCAGGAGACGTCGAGGAGTTAGGGCAATGATGACAGAAAAACCACTGGAGGAGCTGTATCATGTGAGAGTAGAGAGAAATGTGACAAAAGATCGACTAATGGAGCTTGGTGTTCAACGATGGTCAATGTGGAAAACCGGCAAATGCAAGTTACCTTGGGATTGGCATGTAGACCAGTTGGTTTACATTGAAGAAGGTGAGGTAAGGGTTGTACCTGAAGGAAGCAAAAGATTTATGCAGTTTGTAGCAGGCGACCTTGTCCGCTATCCAAAATGGTTTGAAGCTGATCTCTACTTTAATGACTTCTACCAAGAGCGATATAGATTTCAAGCATATGGAGATGACTAGTGAATCAATTTCCTACAACTAGGCTCTTAATTCCCGGGCTTCTAGTTACTGCACTTGCTAGTTATCTGTTTCATAAGCATATTTAGATTGCTGTTGTAATACAAATGGTAGAACATGGTCTTTCTAAATGGTAAGGTGGCCAGATAACATTCAATCCATTAGTGGTACGAATGATTTATCTTTTCACCGGCCAATTCCGACATAGATCTTGACTACAATCTTCCGTCATCTCCTCTCTGGATGATAAACGTTTTTTTTTTCGGCCACCAGTTAGT-AAAAAGATACTGCAACCTGTTTCTTCATCATCATTGTTACATTGGAAGATTTGGTCGGTATGTATTGTCAGTTAAAATACCAACACTATTGTCATTTATCAGTTACTTTGAGATTGTTTTTCAA</genome_strand>
        <mrna_strand>TCAAAACACTTTACTCTGTTCTTCAAGGGTTTTAGAACCAATCTTCCAATCCTCTGCTTCATCTTGCTTTTTGCTTCTACAAAATCTAAAACGAAAACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGGCTGACTCATTTTTCTTGTGATAGCAATACAAATATCGAGGGTGTCGTATGGCGAGTCTCATAACTATGCCTGCTTTAAGCCACTTATCCACCAACACTATCAGCCTAGAACGAAGAAATTTATGTGCATCCTCCAGGAGACGTCGAGGAGTTAGGGCAATGATGACAGAAAAACCACTGGAGGAGCTGTATCATGTGAGAGTAGAGAGAAATGTGACAAAAGATCGACTAATGGAGCTTGGTGTTCAACGATGGTCAATGTGGAAAACCGGCAAATGCAAGTTACCTTGGGATTGGCATGTAGACCAGTTGGTTTACATTGAAGAAGGTGAGGTAAGGGTTGTACCTGAAGGAAGCAAAAGATTTATGCAGTTTGTAGCAGGCGACCTTGTCCGCTATCCAAAATGGTTTGAAGCTGATCTCTACTTTAATGACTTCTACCAAGAGCGATATAGATTTCAAGCATATGGAGATGACTAGTGAATCAATTTCCTACAACTAGGCTCTTAATTCCCGGGCTTCTAGTTACTGCACTTGCTAGTTATCTGTTTCATAAGCATATTTAGATTGCTGTTGTAATACAAATGGTAGAACATGGTCTTTCTAAATGGTAAGGTGGCCAGATAACATTCAATCCATTAGTGGTACGAATGATTTATCTTTTCACCGGCCAATTCCGACATAGATCTTGACTACAATCTTCCGTCATCTCCTCTCTGGATGATAAACGTTTTTTTTTTCGGCCCCCAGTTAGTAAAAAAAATACTGCAACCTGTTTCTTCATCATCATTGTTACATTGGAAAATTGGGTCGGTATGTATTGTCAGTTAAAATACCAACACTATTGCCATTTATCAGTTACTTTGAAATTGTTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328465" ref_strand="+" ref_description="SGN-U328465        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B' (B'gamma), identical to B' regulatory subunit of PP2A (Arabidopsis thaliana) GI:2160694; similar to SWISS-PROT:Q28653 serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, delta isoform (PP2A, B subunit, B' delta isoform, PP2A, B subunit, B56 delta isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta isoform, PP2A, B subunit, B'-gamma) (Oryctolagus cuniculus); contains Pfam domain, PF01603: Protein phosphatase 2A regulatory B subunit (B56 family) | chr4:8817187-8819693 FORWARD | Aliases: None(evalue: 0, score=681) genbank/nr: gi|18414444|ref|NP_567464.1| B' regulatory subunit of PP2A (AtB'gamma) [Arabidopsis thaliana] gi|30683249|ref|NP_849390.1| B' regulatory subunit of PP2A (AtB'gamma) [Arabidopsis thaliana] gi|2160694|gb|AAB58902.1| B' regulatory subunit of PP2A [Arabidopsis thaliana](evalue: 0, score=681)">
      <seq>aggttcagaaaagcaaaatcttttgattaggaaattacaaatgtgttgcgtgctgtttgattttggtgacctgacgaagaatctgaaggagaaggatgtcaagaggcagacattgcttgaattagttgattatatttcagctgtgagttccaagtttaatgaagtcacaatgcaagaattaacgaaaatggttgctgccaatttgtttaggacattaccttcgtttaatcatgacaacgggctactggatatgtttgatccagaagaggatgagcccacgatggaaccctcgtggcctcaccttcaggttgtttatgaacttcttttgcgatttgtggcttcatcggagacggatgctaagcttgcaaaaagatacattgaccactcttttgtcttgagattgcttgaactgtttgattcagaggaccaacgggagcgtgagtacttgaaaacaattcttcatcgtgtatatgggaagttcatggtgcataggccatttatcaggaaagccataaataatatattttaccgttttatctttgagactgagaagcacaatggaattgcagaattgctggagatcttgggcagtataatcaatggatttgctctgcctttaaaggaagagcacaagctttttcttgtccgtgcattgattccccttcacaaacctaaatgcgcagccatgtaccaccaacaactcatgtattgtatcacacagtttgtggagaaagactttaagttgtcagacatcgtgatcagaggacttctgaagtactggccagtcaccaatagtagcaaggaggtcatgtttcttggtgagttggaggaggttctggaagctacccaagctgcagagtttcaacggtgcatggtccctttgttccgtcagattggtcgttgtctcaacagctctcattttcaggtagctgaacgtgctctgttcctgtggaataacgatcacataagaaatcttatcgttcagaatcgtgaagtgattttacccttaatttttccactcttggagaaaaacacccgtggtcattggaaccaagctgttcaaagtctgacgttgaacgtaaggaagatcttttcagatgctgatcaagcactttttgatgagtgtttggagaaattcaaagaagatgagagaaaagataaggagacacaggagaagcgtgaactgacctggaaacgcttagaagatatagcagcatccaactttgtgagtaatgaagctgtgctcatctcaagacttgcttcctctgttgtcattgccagcaccaccaattaacaacaaatttgggtagttggaaccatagatgaaaggcccagaaattgtattttgttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="-" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="130703" stop="125298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130403" g_stop="129479" g_length="925"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="925" r_length="925" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129478" i_stop="126027" i_length="3452">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126026" g_stop="125598" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="926" r_stop="1355" r_length="430" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="-" ref_id="SGN-U328465" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1354</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130403" e_stop="129479"/>
          <exon e_start="126026" e_stop="125598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTCAGAAAAGCAAAATCTTTTAATTAGGAAATTACAAATGTGTTGCGTGCTGTTTGATTTTGGTGACCCGACGAAGAATGTGAAGGAGAAGGATGTCAAGAGGCAGACATTGCTTGAATTAGTTGATTATATTTCAGCTGTGAGTTCCAAGTTTAATGAAGTCACAATGCAAGAATTAACGAAAATGGTTGCTGCCAATTTGTTTAGGACATTACCTTCGTTTAATCATGACAACGGGCTACTGGATATGTTTGATCCAGAAGAGGATGAGCCCACGATGGAACCCTCGTGGCCTCACCTTCAGGTTGTTTATGAACTTCTTTTGCGATTTGTGGCTTCATCGGAGACGGATGCTAAGCTTGCAAAAAGATACATTGACCACTCTTTTGTCTTGAGATTGCTTGAACTGTTTGATTCAGAGGACCAACGGGAGCGTGAGTACTTGAAAACAATTCTTCATCGTGTATATGGGAAGTTCATGGTGCATAGGCCATTTATCAGGAAAGCCATAAATAATATATTTTACCGTTTTATCTTTGAGACTGAGAAGCACAATGGAATTGCAGAATTGCTGGAGATCTTGGGCAGTATAATCAATGGATTTGCTCTGCCTTTAAAGGAAGAGCACAAGCTTTTTCTTGTCCGTGCATTGATTCCCCTTCACAAACCTAAATGCGCAGCCATGTACCACCAACAACTCATGTATTGTATCACACAGTTTGTGGAGAAAGACTTTAAGTTGTCAGACATCGTGATCAGAGGACTTCTGAAGTACTGGCCAGTCACCAATAGTAGCAAGGAGGTCATGTTTCTTGGTGAGTTGGAGGAGGTTCTGGAAGCTACCCAAGCTGCAGAGTTTCAACGGTGCATGGTCCCTTTGTTCCGTCAGATTGGTCGTTGTCTCAACAGCTCTCATTTTCAGGTACCGTATTCTGATTCTGCTGATTCCCATCTTTTGCTAGGTCGAACTTCTGAGTTTATATTTGGTTGCTCCCTGTTTTTACCTTCCATCTTCTAGGCAATTTGAAGCTCAAACTATCTTTCCAGTTTGATGCTTCATTAGGTAAAGACCTCCTTTGGGTTTCCCGTGCTTTGAATTCTCAGATTGGAATTTGGGTTCAGTAAATATTTGGAGGAGAGGATGATGACTGATCTGTTCATTTTATTTATTAGAATAAGCTGATCCAATGACAAATTTGCTGTTGGATATTGAGATTGGTCTATGCAATGAACGATACATATCTTCAGTATCTGCATAAATGAAACTATATTTCTGAAAGATAATACAGAAGAAATAACGGGGTATTCCATTTGGCGTACTGAACATATCTGGTCGCTGCGAAACATAAAAAGTTGAAATACTGGTGTATGTTTATTGTTGTTCTAGTATTCTTTTTTGGTCTAAAAGGATTTTGTTATTACTTTCTTTTGACTGACTGAAGATGCATGTCACCATTTTTTTAGTTAATAATCATTTTCTTTTCCTTATGATTGGACAAGTGATATATCTATGTATCGTCAATCATATGAAAGGTTAAGGACAGATAGAGATGTCGACTTCAGTTTAATTAGATACACAACTGGAGTAGTTTCAACTTCAAACAATTAGGCTGAGTTAAAATGTTAATTACTGTTGCAAATCAGTTAGACATCAAATATAGCTCAAACCAAATTAGCAAATTGCCGGAAATATGTGCCTGGAAACAGAGATTAACCAGTCTAGCTATCAAGCTTTGTTTACTGAAGAGTCTATATTAAAAGATTTGTAGATTGACCAAGTATAGAGAAAATGATCAGAGTCACTTTAAGCTGTCACTGCTTGCCTCAGGAGGTTGTTAGAGTTTAGGGATCTCTTATGTACCAATAGACAGACACACAGGTTAACTGTCACACACACAAACACACACACAGAGAGAGATTATTCAGGAACTATTTGTGATGCGAAGACTTCAATTATAGTTACTTTTTCCCGATAAGGATCAAGTCTATATCCATTAACCTAGGTATATTATATGTTGATGGATGGTTTCAACAGATACTATTTGCATGCTTCTATTTTTACTTATAACATTAGTTTTCCAGCAATGGGCAGAAAAGATTGATCAAGGATGATTCTCGGTTATGGCCATTCATGGGAGGTGGAATATAAATTTTAATTTCCTTGTTATTCTCCGGTTACTATATTGAGAACTTAAGACACAAGTTCCTTTCTTGAGTTTCAGCGTGTATGTCTTTTTCCTTGTTGTCACCAAAGAAGTTTGATTAAAGCCACATGAGGTGTTCAGCTCACCAGCTTTTCACATCTTGGATACGAGAAGCTGTGCAATTTTGGGCAGAAGTTAGAACAATTTACTACTACTGTACTGTAACTGCGCTACTACTATTATTGCTACTACTTTCTATAGAGTATTGCCATGATAGGAAATGTTAATTTTGGCATTTATAAAAGAAGTTAATTTGCTATGATGGACAGATGGAGTAAAATAGAAAGCAGGTAAGACTTCCAATTCAAAATGAACGTATGAAAGAAAGCAGGTAGTATTAAATGAGAAAGAGGGTGTATATAGCCTTTTGGAAATAGAAGGAAAGCTGATGAAGATGCTTGCATTATAACTTCAAACGCAAACTAGTAAGAGAAATGTAAAAGTATTGCTTGCCATGGCTCATGGGTGGATGAGTCAAATCTATGTGGGAAAACGGGACAGTAAGTAGTATTTGGTGTTTTCTTTATTCCCATAAAAATATTTCTTTTAGGGTTTTATGAGTTCTATAGCAACAACATGCTGTCAGAGTCCTATCTCCTTTGCGATTTATGTGTTGTTATAGATCCTTGGTTGAGTTTCCACAGTTCCATTCTGATGTTCTCTAGTATTTAAGGTTGATAGTGTGTCAATTTAAGTGGAACACCGTTCCAGTTATAGAGGAAAAGGGAATACCTTTATGTTTTTCTGGTTAACTAGGAAAGATATCCCAAAGAAAAAAGAAGTAAATGCATAATGCCAAATCTAGTCAGTATGTGGAATTGCTTGAGTGAGTAAAATGGAAACAAGATTCTAAAATCTGGTTGGAACAAGTGCCGAGGGTCTGCCGGAAGCAACCTCTTTATGTCTGAGGTAGGGTAAGGTTTGCGTACACTCTACCCTTCCTAGACCCCACTTCCATTCTCCTTCTGTAGAATGCCAAACAAAGGAATTGAACACAGGAATTACCTTTATCTCAAAAAAAAGAAGAGAGAAGGAATTGAACACAGTATTACATTGCCAGTTTCAGACATACTCCTTGTTTAGTTCAATAAAAAAACAGGTATGACAATGATTTCCAGTTTCAAGCAATTGAACCCTCACATGGATTTCTGATCACTCTCCTTGCACCTCTTCTAGTAAAATAAATGGTATGGATCTTCCGTCCTTCCATCTTTGATACTTTCGTTCCTTGTCGACATTCTTTTTATGTGTCAAGCATTTAAAGATATCAATCTGAGATCTGATTTTTTATTTTTAAAGATTTCTATTTTAAGGCTTGAATCTAAAGGCTTTCACTAACAAGTCCCCGATCTGGTACAGTATATAAGTCAGTTATCTTTATCCGTCTCTTTTTTCAATTCAAGCTGGTCGATCTGAGTTTTAATCTCATTTTTAAGGGTTTGTTTTAAATTCAAGAGTCTTAGCTCCTTGGTTTGCCTTTTACTTGTACTTTCTTTTTGGGGCATCTATGAGCTCCCCCTGGTATAGATTTTGGTGCTATTTGTAGAAAGCCTCATTTACCTGGAATTTATCCCACCACATCAATAAAGTTTTACCTTGTAGAAAGACCACTTTAAATTTAGATCTGAATAGCTTACCTTGGATATTTTGGCCTTCCCTTTCTTTTTCCAGTGATCAATCTAAAAAATCTTATAAATTGTTATTCAAATGCTTTTGCCGCTACGCCTCATTCATATTTTGCTCATTATCCATTTATATTGTTCTACTAGGTGTCCTAATTCTTTTAACAGTGCCATTTATCCATTTTCTTGATTTATCTGAAGTATGATTCCAAGTCTCATTCTTAATGGATTTTATCTCATAAGTTAATCGCTGGAATCTGGAGGGACAATATCAAGCAGCATGCATTCTTTGTGAACAGAATGATAATTTATGTAGTTCACCCCTGCAAAGTTACCTAATTTTATGTTGGAGAAATGTCCAAATACACTTTTTTTTTTAAAAAAAACTGGTAAATGTATACACTGACTTCTTATTTGCAAGAAACCTCATAATAAACCTTAACTATCTTTCCTGTTAGAAACAGATTGTCTACTTGTTATTTCTGGAATCATTATCTGTGTTAAGTCTATTCTACTCTTGAATGTCTCCATTTTCCATAAACTGGCAGGTAGCTGAACGTGCTCTGTTCCTGTGGAATAACGATCACATAAGAAATCTTATCGTTCAGAATCGTGAAGTGATTTTACCCTTAATTTTTCCACTCTTGGAGAAAAACACCCGTGGTCATTGGAACCAAGCTGTTCAAAGTCTGACGTTGAACGTAAGGAAGATCTTTTCAGATGCTGATCAAGCACTTTTTGATGAGTGTTTGGAGAAATTCAAAGAAGATGAGAGAAAAGATAAGGAGACACAGGAGAAGCGTGAACTGACCTGGAAACGCTTAGAAGATATAGCAGCATCCAACTTTGTGAGTAATGAAGCTGTGCTCATCTCAAGACTTGCTTCCTCTGTTGTCATTGCCAGCACCACCAATTAACAACAAATTTGGGTAGTTGGAACCATAGATGAAGGCCCCAG-AATTGTATTTTGTTACTTG</genome_strand>
        <mrna_strand>AGGTTCAGAAAAGCAAAATCTTTTGATTAGGAAATTACAAATGTGTTGCGTGCTGTTTGATTTTGGTGACCTGACGAAGAATCTGAAGGAGAAGGATGTCAAGAGGCAGACATTGCTTGAATTAGTTGATTATATTTCAGCTGTGAGTTCCAAGTTTAATGAAGTCACAATGCAAGAATTAACGAAAATGGTTGCTGCCAATTTGTTTAGGACATTACCTTCGTTTAATCATGACAACGGGCTACTGGATATGTTTGATCCAGAAGAGGATGAGCCCACGATGGAACCCTCGTGGCCTCACCTTCAGGTTGTTTATGAACTTCTTTTGCGATTTGTGGCTTCATCGGAGACGGATGCTAAGCTTGCAAAAAGATACATTGACCACTCTTTTGTCTTGAGATTGCTTGAACTGTTTGATTCAGAGGACCAACGGGAGCGTGAGTACTTGAAAACAATTCTTCATCGTGTATATGGGAAGTTCATGGTGCATAGGCCATTTATCAGGAAAGCCATAAATAATATATTTTACCGTTTTATCTTTGAGACTGAGAAGCACAATGGAATTGCAGAATTGCTGGAGATCTTGGGCAGTATAATCAATGGATTTGCTCTGCCTTTAAAGGAAGAGCACAAGCTTTTTCTTGTCCGTGCATTGATTCCCCTTCACAAACCTAAATGCGCAGCCATGTACCACCAACAACTCATGTATTGTATCACACAGTTTGTGGAGAAAGACTTTAAGTTGTCAGACATCGTGATCAGAGGACTTCTGAAGTACTGGCCAGTCACCAATAGTAGCAAGGAGGTCATGTTTCTTGGTGAGTTGGAGGAGGTTCTGGAAGCTACCCAAGCTGCAGAGTTTCAACGGTGCATGGTCCCTTTGTTCCGTCAGATTGGTCGTTGTCTCAACAGCTCTCATTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTGAACGTGCTCTGTTCCTGTGGAATAACGATCACATAAGAAATCTTATCGTTCAGAATCGTGAAGTGATTTTACCCTTAATTTTTCCACTCTTGGAGAAAAACACCCGTGGTCATTGGAACCAAGCTGTTCAAAGTCTGACGTTGAACGTAAGGAAGATCTTTTCAGATGCTGATCAAGCACTTTTTGATGAGTGTTTGGAGAAATTCAAAGAAGATGAGAGAAAAGATAAGGAGACACAGGAGAAGCGTGAACTGACCTGGAAACGCTTAGAAGATATAGCAGCATCCAACTTTGTGAGTAATGAAGCTGTGCTCATCTCAAGACTTGCTTCCTCTGTTGTCATTGCCAGCACCACCAATTAACAACAAATTTGGGTAGTTGGAACCATAGATGAAAGGCCCAGAAATTGTATTTTGTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-9T9hSF/lycopersicum_combined_unigene_seqs" ref_id="SGN-U347067" ref_strand="+" ref_description="SGN-U347067        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gtttcaacagatactatttgcatgcttctatttttacttataacattagttttgcagcaatgggcagaaaagattgatcaaggatgattctcggttatggccattcatgggaggtggaatataaattttaatttccttgttattctccggttactatattgagaacttaagacacaagttcctttcttgagtttcagcgtgtatgtctttttccttgttgtcaccaaagaagtttgattaaagccacatgaggtgttcagctcaccagcttttcacatcttggatacgagaagctgtgcaattttgggcagaagttagaacaatttactactactgtactgtaactgcgctactactattattgctactactttctatagagtattgccatgataggaaatgttaattttggcatttataaaagaagttaatttgctatgatggacagatggagtaaaatagaaagcaggtaagacttccaattcaaaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-71P1y/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0034N13.1" temp_strand="-" temp_description="C07SLm0034N13.1  AC212651.1 htgs_phase:1 submitted_to_sgn_as:gi|158262144|gb|AC212651.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="128675" stop="127583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128375" g_stop="127883" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.1" gen_strand="-" ref_id="SGN-U347067" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U347067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128375" e_stop="127883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAACAGATACTATTTGCATGCTTCTATTTTTACTTATAACATTAGTTTTCCAGCAATGGGCAGAAAAGATTGATCAAGGATGATTCTCGGTTATGGCCATTCATGGGAGGTGGAATATAAATTTTAATTTCCTTGTTATTCTCCGGTTACTATATTGAGAACTTAAGACACAAGTTCCTTTCTTGAGTTTCAGCGTGTATGTCTTTTTCCTTGTTGTCACCAAAGAAGTTTGATTAAAGCCACATGAGGTGTTCAGCTCACCAGCTTTTCACATCTTGGATACGAGAAGCTGTGCAATTTTGGGCAGAAGTTAGAACAATTTACTACTACTGTACTGTAACTGCGCTACTACTATTATTGCTACTACTTTCTATAGAGTATTGCCATGATAGGAAATGTTAATTTTGGCATTTATAAAAGAAGTTAATTTGCTATGATGGACAGATGGAGTAAAATAGAAAGCAGGTAAGACTTCCAATTCAAAATGAA</genome_strand>
        <mrna_strand>GTTTCAACAGATACTATTTGCATGCTTCTATTTTTACTTATAACATTAGTTTTGCAGCAATGGGCAGAAAAGATTGATCAAGGATGATTCTCGGTTATGGCCATTCATGGGAGGTGGAATATAAATTTTAATTTCCTTGTTATTCTCCGGTTACTATATTGAGAACTTAAGACACAAGTTCCTTTCTTGAGTTTCAGCGTGTATGTCTTTTTCCTTGTTGTCACCAAAGAAGTTTGATTAAAGCCACATGAGGTGTTCAGCTCACCAGCTTTTCACATCTTGGATACGAGAAGCTGTGCAATTTTGGGCAGAAGTTAGAACAATTTACTACTACTGTACTGTAACTGCGCTACTACTATTATTGCTACTACTTTCTATAGAGTATTGCCATGATAGGAAATGTTAATTTTGGCATTTATAAAAGAAGTTAATTTGCTATGATGGACAGATGGAGTAAAATAGAAAGCAGGTAAGACTTCCAATTCAAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="27603" PGL_stop="28900"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27603" e_stop="27688"/>
            <exon e_start="27751" e_stop="27930"/>
            <exon e_start="28625" e_stop="28900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.907"/>
          <exon-intron don_prob="0.762" acc_prob="0.893" e_score="0.989"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="27603" e_stop="27688" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27689" i_stop="27750" i_length="62"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="27751" e_stop="27930" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.762" acc_prob="0.893">
            <gDNA_intron_boundary i_start="27931" i_stop="28624" i_length="694"/>
          </intron>
          <exon e_serial="3" e_score="0.953">
            <gDNA_exon_boundary e_start="28625" e_stop="28900" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27603" stop="27688"/>
              <exon start="27751" stop="27930"/>
              <exon start="28625" stop="28900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATGCTCTATATTGCTAGTGTTCCAGGATTTATTCTAGCACTTGGTATGCAATTTTCCGTTGAGAGCCCTCGCTGGCTATGCAAG : AGATATATGTAGGCTGGGAGACTCGATGAGGCAAAAAAAGTCATCAATAACTTATGGGGTTCATCAGAAGTAGATAAAGCTATCAAAGAATTTGAGTCTGTCCTAAAGAATGATGGGGATGACTTGAACAGCAGTTGGCTGGAGCTCCTAGAGGAACCACACTCGAGAGGTTGTATGAAG : TTGCTACCATTGGAGGTGCCTTGTTTGTACTTCAACAGCTTGCTGGTATAAATGGAGTTCTGTACTTTTCATCCTTGACTTTCAAAGATGTTGGGATCTCAAGCAGCGCTTTAGCAAGCTTATATGTGGGACTGACCAATTTTGCAGGTATATAATGGGTTCAATCACTTGAGACGTGCTTTACAAGGCCTGCTAAATTTCACGTCGTTCCAAGATAATGTTTAGTTGTCGCGACGTGTTTCTTGCAGGTGCACTATGTGCTTTATACTTGATGGA</gDNA_template>
            <first_frame> Q  C  S  I  L  L  V  F  Q  D  L  F  *  H  L  V  C  N  F  P  L  R  A  L  A  G  Y  A  R :   D  I  C  R  L  G  D  S  M  R  Q  K  K  S  S  I  T  Y  G  V  H  Q  K  *  I  K  L  S  K  N  L  S  L  S  *  R  M  M  G  M  T  *  T  A  V  G  W  S  S  *  R  N  H  T  R  E  V  V  *  S :   C  Y  H  W  R  C  L  V  C  T  S  T  A  C  W  Y  K  W  S  S  V  L  F  I  L  D  F  Q  R  C  W  D  L  K  Q  R  F  S  K  L  I  C  G  T  D  Q  F  C  R  Y  I  M  G  S  I  T  *  D  V  L  Y  K  A  C  *  I  S  R  R  S  K  I  M  F  S  C  R  D  V  F  L  A  G  A  L  C  A  L  Y  L  M   </first_frame>
            <second_frame>  N  A  L  Y  C  *  C  S  R  I  Y  S  S  T  W  Y  A  I  F  R  *  E  P  S  L  A  M  Q   : E  I  Y  V  G  W  E  T  R  *  G  K  K  S  H  Q  *  L  M  G  F  I  R  S  R  *  S  Y  Q  R  I  *  V  C  P  K  E  *  W  G  *  L  E  Q  Q  L  A  G  A  P  R  G  T  T  L  E  R  L  Y  E   : V  A  T  I  G  G  A  L  F  V  L  Q  Q  L  A  G  I  N  G  V  L  Y  F  S  S  L  T  F  K  D  V  G  I  S  S  S  A  L  A  S  L  Y  V  G  L  T  N  F  A  G  I  *  W  V  Q  S  L  E  T  C  F  T  R  P  A  K  F  H  V  V  P  R  *  C  L  V  V  A  T  C  F  L  Q  V  H  Y  V  L  Y  T  *  W  </second_frame>
            <third_frame>   M  L  Y  I  A  S  V  P  G  F  I  L  A  L  G  M  Q  F  S  V  E  S  P  R  W  L  C  K  :  R  Y  M  *  A  G  R  L  D  E  A  K  K  V  I  N  N  L  W  G  S  S  E  V  D  K  A  I  K  E  F  E  S  V  L  K  N  D  G  D  D  L  N  S  S  W  L  E  L  L  E  E  P  H  S  R  G  C  M  K  :  L  L  P  L  E  V  P  C  L  Y  F  N  S  L  L  V  *  M  E  F  C  T  F  H  P  *  L  S  K  M  L  G  S  Q  A  A  L  *  Q  A  Y  M  W  D  *  P  I  L  Q  V  Y  N  G  F  N  H  L  R  R  A  L  Q  G  L  L  N  F  T  S  F  Q  D  N  V  *  L  S  R  R  V  S  C  R  C  T  M  C  F  I  L  D  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27763" stop="27930"/>
                    <exon start="28625" stop="28675"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGRLDEAKKVINNLWGSSEVDKAIKEFESVLKNDGDDLNSSWLELLEEPHSRGCMKLLPLEVPCLYFNSLLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27873" stop="27930"/>
                    <exon start="28625" stop="28779"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEQQLAGAPRGTTLERLYEVATIGGALFVLQQLAGINGVLYFSSLTFKDVGISSSALASLYVGLTNFAGI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="29438" PGL_stop="30276"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29438" e_stop="29520"/>
            <exon e_start="29648" e_stop="30276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.645" acc_prob="0.952" e_score="0.952"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="29438" e_stop="29520" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.645" acc_prob="0.952">
            <gDNA_intron_boundary i_start="29521" i_stop="29647" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="29648" e_stop="30276" e_length="629"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29438" stop="29520"/>
              <exon start="29648" stop="30276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTAACTGGTCTTATAATACAAGAGCTCAGCAGCAGCAGGACACGGGGGAAGATAATGGCCTTTAGTTTCTCCGTTCATTGG : GTCTTCAACTTCTTGGTGGGTCTGTTTTTTCTAGAACTCGTTCAGAAATTTGGTGTTGCTCCAGTTTATGGAAGCTTCGGTGCTGTTTCATTGTTGGCAACAGCCTTTGCTTACTTCTTAATAGTTGAGACTAAAGGTCGATCCCTTGAAGAGATTGAAATGTCACTAAATCCCAAATTTCAGGGCAAACGTAATTCAGAATAATCTCATCTCATGGCTCATACTGAAGAAAAATTGGAGATTCTGGAGAAACTGCAGGGGCTCGTGGAACAAAAAGTCGAAAATAGCACTACTCTATGCGCGATTTTATTTCATTTTATACTAGTAGTTAAAGCAACATTTGTAAATTAAAGTTTGATATCACTCTTGTATGTTTGTTCTGCAAACTCAATATGGTCATTTTTCTTCTTCCAAGGGCATTGTACATGATGTTTAGGTTCCCTGTAAATTGTTGGCACCATTTTCAGCTTCAAACAAAGAGAGTTATATTCTTCGGAGCAATTGTTTGAATTGCCAAAATACATTTTAGGTTCTTGAAACTTATTTTCAAGTCAAACTAACTCACGTAAATTGTGACACGCGGAGAGTATTTATTAAGACCAATAAAATTGAAGTTATTAAAAAAGATT</gDNA_template>
            <first_frame> Q  *  L  V  L  *  Y  K  S  S  A  A  A  G  H  G  G  R  *  W  P  L  V  S  P  F  I  G :   S  S  T  S  W  W  V  C  F  F  *  N  S  F  R  N  L  V  L  L  Q  F  M  E  A  S  V  L  F  H  C  W  Q  Q  P  L  L  T  S  *  *  L  R  L  K  V  D  P  L  K  R  L  K  C  H  *  I  P  N  F  R  A  N  V  I  Q  N  N  L  I  S  W  L  I  L  K  K  N  W  R  F  W  R  N  C  R  G  S  W  N  K  K  S  K  I  A  L  L  Y  A  R  F  Y  F  I  L  Y  *  *  L  K  Q  H  L  *  I  K  V  *  Y  H  S  C  M  F  V  L  Q  T  Q  Y  G  H  F  S  S  S  K  G  I  V  H  D  V  *  V  P  C  K  L  L  A  P  F  S  A  S  N  K  E  S  Y  I  L  R  S  N  C  L  N  C  Q  N  T  F  *  V  L  E  T  Y  F  Q  V  K  L  T  H  V  N  C  D  T  R  R  V  F  I  K  T  N  K  I  E  V  I  K  K  D  </first_frame>
            <second_frame>  S  N  W  S  Y  N  T  R  A  Q  Q  Q  Q  D  T  G  E  D  N  G  L  *  F  L  R  S  L   : G  L  Q  L  L  G  G  S  V  F  S  R  T  R  S  E  I  W  C  C  S  S  L  W  K  L  R  C  C  F  I  V  G  N  S  L  C  L  L  L  N  S  *  D  *  R  S  I  P  *  R  D  *  N  V  T  K  S  Q  I  S  G  Q  T  *  F  R  I  I  S  S  H  G  S  Y  *  R  K  I  G  D  S  G  E  T  A  G  A  R  G  T  K  S  R  K  *  H  Y  S  M  R  D  F  I  S  F  Y  T  S  S  *  S  N  I  C  K  L  K  F  D  I  T  L  V  C  L  F  C  K  L  N  M  V  I  F  L  L  P  R  A  L  Y  M  M  F  R  F  P  V  N  C  W  H  H  F  Q  L  Q  T  K  R  V  I  F  F  G  A  I  V  *  I  A  K  I  H  F  R  F  L  K  L  I  F  K  S  N  *  L  T  *  I  V  T  R  G  E  Y  L  L  R  P  I  K  L  K  L  L  K  K  I </second_frame>
            <third_frame>   V  T  G  L  I  I  Q  E  L  S  S  S  R  T  R  G  K  I  M  A  F  S  F  S  V  H  W  :  V  F  N  F  L  V  G  L  F  F  L  E  L  V  Q  K  F  G  V  A  P  V  Y  G  S  F  G  A  V  S  L  L  A  T  A  F  A  Y  F  L  I  V  E  T  K  G  R  S  L  E  E  I  E  M  S  L  N  P  K  F  Q  G  K  R  N  S  E  *  S  H  L  M  A  H  T  E  E  K  L  E  I  L  E  K  L  Q  G  L  V  E  Q  K  V  E  N  S  T  T  L  C  A  I  L  F  H  F  I  L  V  V  K  A  T  F  V  N  *  S  L  I  S  L  L  Y  V  C  S  A  N  S  I  W  S  F  F  F  F  Q  G  H  C  T  *  C  L  G  S  L  *  I  V  G  T  I  F  S  F  K  Q  R  E  L  Y  S  S  E  Q  L  F  E  L  P  K  Y  I  L  G  S  *  N  L  F  S  S  Q  T  N  S  R  K  L  *  H  A  E  S  I  Y  *  D  Q  *  N  *  S  Y  *  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29440" stop="29520"/>
                    <exon start="29648" stop="29851"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTGLIIQELSSSRTRGKIMAFSFSVHWVFNFLVGLFFLELVQKFGVAPVYGSFGAVSLLATAFAYFLIVETKGRSLEEIEMSLNPKFQGKRNSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="35487" PGL_stop="40194"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35487" e_stop="35527"/>
            <exon e_start="35653" e_stop="35721"/>
            <exon e_start="36501" e_stop="36639"/>
            <exon e_start="39211" e_stop="39265"/>
            <exon e_start="39626" e_stop="40194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="0.976"/>
          <exon-intron don_prob="0.913" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="35487" e_stop="35527" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="35528" i_stop="35652" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35653" e_stop="35721" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.913" acc_prob="0.993">
            <gDNA_intron_boundary i_start="35722" i_stop="36500" i_length="779"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36501" e_stop="36639" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="36640" i_stop="39210" i_length="2571"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39211" e_stop="39265" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39266" i_stop="39625" i_length="360"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="39626" e_stop="40194" e_length="569"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35487" stop="35527"/>
              <exon start="35653" stop="35721"/>
              <exon start="36501" stop="36639"/>
              <exon start="39211" stop="39265"/>
              <exon start="39626" stop="40194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317263" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGCTGCCACAGGGGGGTTTACTCCTGACCGTGTTGCTGT : GTATTGTAAGTGTGAGATGCCCTACAACCCTGATGATCTCATGGTACAATGTGAAGGATGCAAAGACTG : GTTTCATCCCTCTTGTATGGGTATGTCCATTGATGAAGCAAAGACATTAGAGCATTTCTTGTGTTCTGACTGTTCCTCAGAAGATGAAACCAAACGTCCTTTGAACTCATTTCATGTTTCACCACCTGATGAAGCAAAG : GTGGAGTCAAAGCGCAGGAAGAGATAAATAGCTGACCTTGATGCAGTATGAGGAG : GTGCCTGTTTCTATATATTGGATTACATGTGAAGCTGGATGTATGATGACAAGCCTGTAAAAGCTGATCAAGAATCATATTGATGAATAAGAACTTTGCCTCATCTTGAGTTGCAATATATCTGTGGTTAGGATCTCCTGATCAAGAATCATATTACAACAACTTACCCAGTGTAACCCCAGAAGTACGCATATCTTACCTCTTCCTTAAAAGGAAGAGAAGCCTGATCGAGAATCATATTACAACAACATATCCAGTGTAACCCCACAAGTACACATACCTTACCTCTTCCTTAAAAGGAAGAGAAGCCTGATCGAGAATCATATTACAACAACATACCCAGTGTGTAATCCCAGGAGTACACAAACCTTATCTCTTCCTTGAAAGGAAGAAAGCCCTGATCAAGAATCATATTTGTACTGTACTAATTCGCTTAAATTTTCCTGGGAACTCGTTGATCAATAGTGATCTCTTGATAAATGTCCCTTGCTACAATCCTTGTATGTGGTTAATGGAAGATTGAGAGACTTCCGCTGCTGAAAATGAAGTTATTTATGCTAATTGGGCAA</gDNA_template>
            <first_frame> K  A  A  T  G  G  F  T  P  D  R  V  A  V :   Y  C  K  C  E  M  P  Y  N  P  D  D  L  M  V  Q  C  E  G  C  K  D  W :   F  H  P  S  C  M  G  M  S  I  D  E  A  K  T  L  E  H  F  L  C  S  D  C  S  S  E  D  E  T  K  R  P  L  N  S  F  H  V  S  P  P  D  E  A  K  :  V  E  S  K  R  R  K  R  *  I  A  D  L  D  A  V  *  G   : G  A  C  F  Y  I  L  D  Y  M  *  S  W  M  Y  D  D  K  P  V  K  A  D  Q  E  S  Y  *  *  I  R  T  L  P  H  L  E  L  Q  Y  I  C  G  *  D  L  L  I  K  N  H  I  T  T  T  Y  P  V  *  P  Q  K  Y  A  Y  L  T  S  S  L  K  G  R  E  A  *  S  R  I  I  L  Q  Q  H  I  Q  C  N  P  T  S  T  H  T  L  P  L  P  *  K  E  E  K  P  D  R  E  S  Y  Y  N  N  I  P  S  V  *  S  Q  E  Y  T  N  L  I  S  S  L  K  G  R  K  P  *  S  R  I  I  F  V  L  Y  *  F  A  *  I  F  L  G  T  R  *  S  I  V  I  S  *  *  M  S  L  A  T  I  L  V  C  G  *  W  K  I  E  R  L  P  L  L  K  M  K  L  F  M  L  I  G  Q </first_frame>
            <second_frame>  K  L  P  Q  G  G  L  L  L  T  V  L  L   : C  I  V  S  V  R  C  P  T  T  L  M  I  S  W  Y  N  V  K  D  A  K  T   : G  F  I  P  L  V  W  V  C  P  L  M  K  Q  R  H  *  S  I  S  C  V  L  T  V  P  Q  K  M  K  P  N  V  L  *  T  H  F  M  F  H  H  L  M  K  Q  R :   W  S  Q  S  A  G  R  D  K  *  L  T  L  M  Q  Y  E  E  :  V  P  V  S  I  Y  W  I  T  C  E  A  G  C  M  M  T  S  L  *  K  L  I  K  N  H  I  D  E  *  E  L  C  L  I  L  S  C  N  I  S  V  V  R  I  S  *  S  R  I  I  L  Q  Q  L  T  Q  C  N  P  R  S  T  H  I  L  P  L  P  *  K  E  E  K  P  D  R  E  S  Y  Y  N  N  I  S  S  V  T  P  Q  V  H  I  P  Y  L  F  L  K  R  K  R  S  L  I  E  N  H  I  T  T  T  Y  P  V  C  N  P  R  S  T  Q  T  L  S  L  P  *  K  E  E  S  P  D  Q  E  S  Y  L  Y  C  T  N  S  L  K  F  S  W  E  L  V  D  Q  *  *  S  L  D  K  C  P  L  L  Q  S  L  Y  V  V  N  G  R  L  R  D  F  R  C  *  K  *  S  Y  L  C  *  L  G   </second_frame>
            <third_frame>   S  C  H  R  G  V  Y  S  *  P  C  C  C  :  V  L  *  V  *  D  A  L  Q  P  *  *  S  H  G  T  M  *  R  M  Q  R  L  :  V  S  S  L  L  Y  G  Y  V  H  *  *  S  K  D  I  R  A  F  L  V  F  *  L  F  L  R  R  *  N  Q  T  S  F  E  L  I  S  C  F  T  T  *  *  S  K   : G  G  V  K  A  Q  E  E  I  N  S  *  P  *  C  S  M  R  R :   C  L  F  L  Y  I  G  L  H  V  K  L  D  V  *  *  Q  A  C  K  S  *  S  R  I  I  L  M  N  K  N  F  A  S  S  *  V  A  I  Y  L  W  L  G  S  P  D  Q  E  S  Y  Y  N  N  L  P  S  V  T  P  E  V  R  I  S  Y  L  F  L  K  R  K  R  S  L  I  E  N  H  I  T  T  T  Y  P  V  *  P  H  K  Y  T  Y  L  T  S  S  L  K  G  R  E  A  *  S  R  I  I  L  Q  Q  H  T  Q  C  V  I  P  G  V  H  K  P  Y  L  F  L  E  R  K  K  A  L  I  K  N  H  I  C  T  V  L  I  R  L  N  F  P  G  N  S  L  I  N  S  D  L  L  I  N  V  P  C  Y  N  P  C  M  W  L  M  E  D  *  E  T  S  A  A  E  N  E  V  I  Y  A  N  W  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35487" stop="35527"/>
                    <exon start="35653" stop="35721"/>
                    <exon start="36501" stop="36639"/>
                    <exon start="39211" stop="39237"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMSIDEAKTLEHFLCSDCSSEDETKRPLNSFHVSPPDEAKVESKRRKR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39939" stop="40148"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRIILQQHTQCVIPGVHKPYLFLERKKALIKNHICTVLIRLNFPGNSLINSDLLINVPCYNPCMWLMED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="59806" PGL_stop="40318"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46976" e_stop="46015"/>
            <exon e_start="45326" e_stop="44826"/>
            <exon e_start="44619" e_stop="44599"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.931" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="46976" e_stop="46015" e_length="962"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.931">
            <gDNA_intron_boundary i_start="46014" i_stop="45327" i_length="688"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45326" e_stop="44826" e_length="501"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44825" i_stop="44620" i_length="206"/>
          </intron>
          <exon e_serial="3" e_score="0.571">
            <gDNA_exon_boundary e_start="44619" e_stop="44599" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46976" stop="46234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46247" stop="46015"/>
              <exon start="45326" stop="44826"/>
              <exon start="44619" stop="44599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335734" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAATTCTATTTCATTGTTTTCCCCAAAGTATTAAATTATCTGAACAATAATCATTCATTATTTTACTAATTTTCAATCCAACTTTATCAATAACCCACTCAGTCAACGCTTACTCCTCCAAAACCCAGCTCAAATTTCCCAGAAAAATTCGTTCTTGCATCAATTTCCTTCACACCCATTTCATAATTTCCAGAAAAATACATTTTTGTATCAATTTCATAATACCCATTTCAGGAAATCCATAAAAATACGTTCTTGAATCAATTTCCCACATACCCATTTCAGAAATTTTCATTCTTTATTCATGAAACATGTTTGAATCCAGGCCAAGAAGTGTTTTGAGCTTAGGGGTTTTCGTTATACTAGTTTACTTATCCTCTGTTCCATTACCAGTTAACTCCCAATGTAACAGAGGCTGCGATTTAGCTTTAGCTTCATTCTATGTCTGGCGAGGTTCAAATCTCACTTTAATCTCAGAGATGTTCTCCACCAGTATAGCAGATATCGTTTCTTACAACAACAGGGACAATATCCCTAATCAAGATAGTGTAATCGCCGGGACAAGAATTAACATACCTTTCCGTTGTGATTGCTTGAACGACGGGGAGGTATTGGGTCATGCTTTCCCGTATAGGGTTAAATCCGGTGATACTTATGATCTTGTGGCGAGGAACTACTCTGATTTGACGACTGCACAGTGGATGATGAAGTTTAATAGTTATCCTGAGAATAATATTCCGAATACTGTGAATTTAAGTGTTGTAGTGAATTGTTCTTGTGGGAATAGTGACGTTTCGAAGGATTTTGGGTTGTTTGTGACGTACCCTGTGCGGGCGGAGGATAACTTGACGTCAGTGGCTTCAGCAGCCAATGTGAGTGAAGATATAATCAGAAGGTATAATCCCGCGGCCGTGTCCATACTAGATATAGGGCAAGGAATCATCTATATACCGGGAAGAG : AGTGTAACGCTGGACCAATTGAACTTTAGCATTGTCATCTGTCTTTGTACTAAAGTTGTTCGTACAATGGATAAAGGGGTTCGAAGTACATGATTAACTCTGGTGGTGCTGAACTGCTCATATCGGGAAAATGTGACAATTTTCAAGCATGATAATCTTGTGTGAAATTCCTATGATTTACATAGTGCTTTTGATCAGCAAAATTCTAGCTCTACCAACTAAGTTTATCGCTGGGCTCCGTAATGGCAACGCAAGGCACAAGCAGTATTCACAAAAAGAAGAAGCACAACTGAGTGACTGTTCTATGTTGCTTGACTTCTTTGAGCTCTTCAATCTGCATCTTGGATCATTTCTTCAAATTGCCGACCTGCCTCGATTTCGGTCTTGAAAAAACATTTTTATATATACCACATGGAATGCAAATGTGAAGATTAAGAAATACATTTACCCTCAAAGAGAATTAGATGAAATAAATGTAGAATAATCTTATAAAAAAAAAAA : AAAAAAGATATAAGGGCTTGC</gDNA_template>
            <first_frame> H  N  S  I  S  L  F  S  P  K  Y  *  I  I  *  T  I  I  I  H  Y  F  T  N  F  Q  S  N  F  I  N  N  P  L  S  Q  R  L  L  L  Q  N  P  A  Q  I  S  Q  K  N  S  F  L  H  Q  F  P  S  H  P  F  H  N  F  Q  K  N  T  F  L  Y  Q  F  H  N  T  H  F  R  K  S  I  K  I  R  S  *  I  N  F  P  H  T  H  F  R  N  F  H  S  L  F  M  K  H  V  *  I  Q  A  K  K  C  F  E  L  R  G  F  R  Y  T  S  L  L  I  L  C  S  I  T  S  *  L  P  M  *  Q  R  L  R  F  S  F  S  F  I  L  C  L  A  R  F  K  S  H  F  N  L  R  D  V  L  H  Q  Y  S  R  Y  R  F  L  Q  Q  Q  G  Q  Y  P  *  S  R  *  C  N  R  R  D  K  N  *  H  T  F  P  L  *  L  L  E  R  R  G  G  I  G  S  C  F  P  V  *  G  *  I  R  *  Y  L  *  S  C  G  E  E  L  L  *  F  D  D  C  T  V  D  D  E  V  *  *  L  S  *  E  *  Y  S  E  Y  C  E  F  K  C  C  S  E  L  F  L  W  E  *  *  R  F  E  G  F  W  V  V  C  D  V  P  C  A  G  G  G  *  L  D  V  S  G  F  S  S  Q  C  E  *  R  Y  N  Q  K  V  *  S  R  G  R  V  H  T  R  Y  R  A  R  N  H  L  Y  T  G  K  R :   V  *  R  W  T  N  *  T  L  A  L  S  S  V  F  V  L  K  L  F  V  Q  W  I  K  G  F  E  V  H  D  *  L  W  W  C  *  T  A  H  I  G  K  M  *  Q  F  S  S  M  I  I  L  C  E  I  P  M  I  Y  I  V  L  L  I  S  K  I  L  A  L  P  T  K  F  I  A  G  L  R  N  G  N  A  R  H  K  Q  Y  S  Q  K  E  E  A  Q  L  S  D  C  S  M  L  L  D  F  F  E  L  F  N  L  H  L  G  S  F  L  Q  I  A  D  L  P  R  F  R  S  *  K  N  I  F  I  Y  T  T  W  N  A  N  V  K  I  K  K  Y  I  Y  P  Q  R  E  L  D  E  I  N  V  E  *  S  Y  K  K  K  K :   K  K  I  *  G  L   </first_frame>
            <second_frame>  T  I  L  F  H  C  F  P  Q  S  I  K  L  S  E  Q  *  S  F  I  I  L  L  I  F  N  P  T  L  S  I  T  H  S  V  N  A  Y  S  S  K  T  Q  L  K  F  P  R  K  I  R  S  C  I  N  F  L  H  T  H  F  I  I  S  R  K  I  H  F  C  I  N  F  I  I  P  I  S  G  N  P  *  K  Y  V  L  E  S  I  S  H  I  P  I  S  E  I  F  I  L  Y  S  *  N  M  F  E  S  R  P  R  S  V  L  S  L  G  V  F  V  I  L  V  Y  L  S  S  V  P  L  P  V  N  S  Q  C  N  R  G  C  D  L  A  L  A  S  F  Y  V  W  R  G  S  N  L  T  L  I  S  E  M  F  S  T  S  I  A  D  I  V  S  Y  N  N  R  D  N  I  P  N  Q  D  S  V  I  A  G  T  R  I  N  I  P  F  R  C  D  C  L  N  D  G  E  V  L  G  H  A  F  P  Y  R  V  K  S  G  D  T  Y  D  L  V  A  R  N  Y  S  D  L  T  T  A  Q  W  M  M  K  F  N  S  Y  P  E  N  N  I  P  N  T  V  N  L  S  V  V  V  N  C  S  C  G  N  S  D  V  S  K  D  F  G  L  F  V  T  Y  P  V  R  A  E  D  N  L  T  S  V  A  S  A  A  N  V  S  E  D  I  I  R  R  Y  N  P  A  A  V  S  I  L  D  I  G  Q  G  I  I  Y  I  P  G  R   : E  C  N  A  G  P  I  E  L  *  H  C  H  L  S  L  Y  *  S  C  S  Y  N  G  *  R  G  S  K  Y  M  I  N  S  G  G  A  E  L  L  I  S  G  K  C  D  N  F  Q  A  *  *  S  C  V  K  F  L  *  F  T  *  C  F  *  S  A  K  F  *  L  Y  Q  L  S  L  S  L  G  S  V  M  A  T  Q  G  T  S  S  I  H  K  K  K  K  H  N  *  V  T  V  L  C  C  L  T  S  L  S  S  S  I  C  I  L  D  H  F  F  K  L  P  T  C  L  D  F  G  L  E  K  T  F  L  Y  I  P  H  G  M  Q  M  *  R  L  R  N  T  F  T  L  K  E  N  *  M  K  *  M  *  N  N  L  I  K  K  K   : K  K  R  Y  K  G  L  </second_frame>
            <third_frame>   Q  F  Y  F  I  V  F  P  K  V  L  N  Y  L  N  N  N  H  S  L  F  Y  *  F  S  I  Q  L  Y  Q  *  P  T  Q  S  T  L  T  P  P  K  P  S  S  N  F  P  E  K  F  V  L  A  S  I  S  F  T  P  I  S  *  F  P  E  K  Y  I  F  V  S  I  S  *  Y  P  F  Q  E  I  H  K  N  T  F  L  N  Q  F  P  T  Y  P  F  Q  K  F  S  F  F  I  H  E  T  C  L  N  P  G  Q  E  V  F  *  A  *  G  F  S  L  Y  *  F  T  Y  P  L  F  H  Y  Q  L  T  P  N  V  T  E  A  A  I  *  L  *  L  H  S  M  S  G  E  V  Q  I  S  L  *  S  Q  R  C  S  P  P  V  *  Q  I  S  F  L  T  T  T  G  T  I  S  L  I  K  I  V  *  S  P  G  Q  E  L  T  Y  L  S  V  V  I  A  *  T  T  G  R  Y  W  V  M  L  S  R  I  G  L  N  P  V  I  L  M  I  L  W  R  G  T  T  L  I  *  R  L  H  S  G  *  *  S  L  I  V  I  L  R  I  I  F  R  I  L  *  I  *  V  L  *  *  I  V  L  V  G  I  V  T  F  R  R  I  L  G  C  L  *  R  T  L  C  G  R  R  I  T  *  R  Q  W  L  Q  Q  P  M  *  V  K  I  *  S  E  G  I  I  P  R  P  C  P  Y  *  I  *  G  K  E  S  S  I  Y  R  E  E  :  S  V  T  L  D  Q  L  N  F  S  I  V  I  C  L  C  T  K  V  V  R  T  M  D  K  G  V  R  S  T  *  L  T  L  V  V  L  N  C  S  Y  R  E  N  V  T  I  F  K  H  D  N  L  V  *  N  S  Y  D  L  H  S  A  F  D  Q  Q  N  S  S  S  T  N  *  V  Y  R  W  A  P  *  W  Q  R  K  A  Q  A  V  F  T  K  R  R  S  T  T  E  *  L  F  Y  V  A  *  L  L  *  A  L  Q  S  A  S  W  I  I  S  S  N  C  R  P  A  S  I  S  V  L  K  K  H  F  Y  I  Y  H  M  E  C  K  C  E  D  *  E  I  H  L  P  S  K  R  I  R  *  N  K  C  R  I  I  L  *  K  K  K  :  K  K  D  I  R  A  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46666" stop="46015"/>
                    <exon start="45326" stop="45298"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMFESRPRSVLSLGVFVILVYLSSVPLPVNSQCNRGCDLALASFYVWRGSNLTLISEMFSTSIADIVSYNNRDNIPNQDSVIAGTRINIPFRCDCLNDGEVLGHAFPYRVKSGDTYDLVARNYSDLTTAQWMMKFNSYPENNIPNTVNLSVVVNCSCGNSDVSKDFGLFVTYPVRAEDNLTSVASAANVSEDIIRRYNPAAVSILDIGQGIIYIPGRECNAGPIEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45190" stop="44939"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFSSMIILCEIPMIYIVLLISKILALPTKFIAGLRNGNARHKQYSQKEEAQLSDCSMLLDFFELFNLHLGSFLQIADLPRFRS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46931" stop="46716"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIIIHYFTNFQSNFINNPLSQRLLLQNPAQISQKNSFLHQFPSHPFHNFQKNTFLYQFHNTHFRKSIKIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46037" e_stop="45432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46037" e_stop="45432" e_length="606"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46037" stop="45432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCATCTATATACCGGGAAGAGGTTGGTGTTCGTGATCTTTATGTGTTTGTTTTATTTCCTATTACAAGTTTTATGTGTTTGCGTTAGAACTTTATGAGGTGGTTTGGTAGCTGGTTAGAGTTATGCAGATATTAGTAATGCAGGAATTAGTTATGAGTGAATCTATATATTATTTTATGTAAATATTAATTATGTAGGGATTAGTTATACAAATCTTCTTATCTAGCTACCAAACGACCCCTGAGGTTGTAGTCCTAGTACTTCTTCTTTTGGTTCATATTTTAGTCTCGCAGGAACAGGGGAAAAATGCTCTCTTTTTCAATGATAAGGGAACCCCAACCACTCGTATGCAATAGCTCACAAACTGCACAGGAGAGCAAACTGCACTAGGCAAGTCCCATGTGACGAGCTCAGCCTAGAAGGCAAGTAGGCACTAAAAAAAGGTTAGGAAGGAAGTAGGAATTAATTTAGGAAGCAAAATGTTTTGTTTAAGGGTGACACTGGATTGAAGTTTATTGTTTACTATAAACTGGAGTTTGTAGTTTGAATGGATAGAATAAATGAGGATTGAATCATCAAGGATGTGTTTTGATGTGTCTAAATG</gDNA_template>
            <first_frame> N  H  L  Y  T  G  K  R  L  V  F  V  I  F  M  C  L  F  Y  F  L  L  Q  V  L  C  V  C  V  R  T  L  *  G  G  L  V  A  G  *  S  Y  A  D  I  S  N  A  G  I  S  Y  E  *  I  Y  I  L  F  Y  V  N  I  N  Y  V  G  I  S  Y  T  N  L  L  I  *  L  P  N  D  P  *  G  C  S  P  S  T  S  S  F  G  S  Y  F  S  L  A  G  T  G  E  K  C  S  L  F  Q  *  *  G  N  P  N  H  S  Y  A  I  A  H  K  L  H  R  R  A  N  C  T  R  Q  V  P  C  D  E  L  S  L  E  G  K  *  A  L  K  K  G  *  E  G  S  R  N  *  F  R  K  Q  N  V  L  F  K  G  D  T  G  L  K  F  I  V  Y  Y  K  L  E  F  V  V  *  M  D  R  I  N  E  D  *  I  I  K  D  V  F  *  C  V  *  M </first_frame>
            <second_frame>  I  I  Y  I  P  G  R  G  W  C  S  *  S  L  C  V  C  F  I  S  Y  Y  K  F  Y  V  F  A  L  E  L  Y  E  V  V  W  *  L  V  R  V  M  Q  I  L  V  M  Q  E  L  V  M  S  E  S  I  Y  Y  F  M  *  I  L  I  M  *  G  L  V  I  Q  I  F  L  S  S  Y  Q  T  T  P  E  V  V  V  L  V  L  L  L  L  V  H  I  L  V  S  Q  E  Q  G  K  N  A  L  F  F  N  D  K  G  T  P  T  T  R  M  Q  *  L  T  N  C  T  G  E  Q  T  A  L  G  K  S  H  V  T  S  S  A  *  K  A  S  R  H  *  K  K  V  R  K  E  V  G  I  N  L  G  S  K  M  F  C  L  R  V  T  L  D  *  S  L  L  F  T  I  N  W  S  L  *  F  E  W  I  E  *  M  R  I  E  S  S  R  M  C  F  D  V  S  K   </second_frame>
            <third_frame>   S  S  I  Y  R  E  E  V  G  V  R  D  L  Y  V  F  V  L  F  P  I  T  S  F  M  C  L  R  *  N  F  M  R  W  F  G  S  W  L  E  L  C  R  Y  *  *  C  R  N  *  L  *  V  N  L  Y  I  I  L  C  K  Y  *  L  C  R  D  *  L  Y  K  S  S  Y  L  A  T  K  R  P  L  R  L  *  S  *  Y  F  F  F  W  F  I  F  *  S  R  R  N  R  G  K  M  L  S  F  S  M  I  R  E  P  Q  P  L  V  C  N  S  S  Q  T  A  Q  E  S  K  L  H  *  A  S  P  M  *  R  A  Q  P  R  R  Q  V  G  T  K  K  R  L  G  R  K  *  E  L  I  *  E  A  K  C  F  V  *  G  *  H  W  I  E  V  Y  C  L  L  *  T  G  V  C  S  L  N  G  *  N  K  *  G  L  N  H  Q  G  C  V  L  M  C  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0034N13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="56330" e_stop="56315"/>
            <exon e_start="55867" e_stop="55379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.259" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.625">
            <gDNA_exon_boundary e_start="56330" e_stop="56315" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.259" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56314" i_stop="55868" i_length="447"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="55867" e_stop="55379" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56330" stop="56315"/>
              <exon start="55867" stop="55379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAATCTTTTTCCT : TTTTCATTCGTTTTCACTAATCTTCAAAAGCAAAAGCGAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAATCCTCTATTGCTTAACATGCCTAAGTAGAAAAACAATCTACCCACTTAGCTATCCCACCTGGACAACCTAGACTTCTACCACAACACACCAATTCCTTTATAGATTCAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTTCTAAACAACTAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTTGGAATAATTCTATTTTTGCTTTGTATTAGCTTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTAAACAAAAATGTTTAGGAAAGTGTCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGACTGGAAAAGTCACACTTTCTGACGCCATCGGAAAGTGTGCACCTACTTTCTGTACCGTCTCCAGC</gDNA_template>
            <first_frame> F  Q  S  F  S   : F  F  I  R  F  H  *  S  S  K  A  K  A  K  H  D  Y  T  K  R  K  K  E  L  S  I  L  P  L  S  N  N  P  L  L  L  N  M  P  K  *  K  N  N  L  P  T  *  L  S  H  L  D  N  L  D  F  Y  H  N  T  P  I  P  L  *  I  Q  E  W  F  T  I  *  E  Q  E  N  K  F  L  N  N  *  T  K  S  S  R  C  C  C  C  P  W  N  N  S  I  F  A  L  Y  *  L  L  Q  E  F  L  K  S  F  Y  Q  V  A  K  T  K  Q  K  C  L  G  K  C  L  L  Y  G  Q  V  T  F  L  N  F  F  A  I  D  W  K  S  H  T  F  *  R  H  R  K  V  C  T  Y  F  L  Y  R  L  Q  </first_frame>
            <second_frame>  F  N  L  F  P  :  F  S  F  V  F  T  N  L  Q  K  Q  K  R  N  T  I  T  P  N  V  R  K  S  Y  Q  S  Y  R  *  A  I  I  L  Y  C  L  T  C  L  S  R  K  T  I  Y  P  L  S  Y  P  T  W  T  T  *  T  S  T  T  T  H  Q  F  L  Y  R  F  R  S  G  L  Q  F  K  N  K  R  I  N  F  *  T  T  R  R  K  A  P  D  V  A  V  V  L  G  I  I  L  F  L  L  C  I  S  F  C  K  S  S  *  K  V  F  I  K  L  Q  K  L  N  K  N  V  *  E  S  V  F  Y  M  G  K  S  L  S  *  T  S  L  P  L  T  G  K  V  T  L  S  D  A  I  G  K  C  A  P  T  F  C  T  V  S  S </second_frame>
            <third_frame>   S  I  F  F  L :   F  H  S  F  S  L  I  F  K  S  K  S  E  T  R  L  H  Q  T  *  E  R  V  I  N  L  T  V  K  Q  *  S  S  I  A  *  H  A  *  V  E  K  Q  S  T  H  L  A  I  P  P  G  Q  P  R  L  L  P  Q  H  T  N  S  F  I  D  S  G  V  V  Y  N  L  R  T  R  E  *  I  S  K  Q  L  D  E  K  L  Q  M  L  L  L  S  L  E  *  F  Y  F  C  F  V  L  A  F  A  R  V  L  E  K  F  L  S  S  C  K  N  *  T  K  M  F  R  K  V  S  F  I  W  A  S  H  F  P  K  L  L  C  H  *  L  E  K  S  H  F  L  T  P  S  E  S  V  H  L  L  S  V  P  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0034N13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="59806" e_stop="59282"/>
            <exon e_start="41772" e_stop="41651"/>
            <exon e_start="41259" e_stop="41168"/>
            <exon e_start="40778" e_stop="40692"/>
            <exon e_start="40618" e_stop="40318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="0.994"/>
          <exon-intron don_prob="0.894" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="59806" e_stop="59282" e_length="525"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="59281" i_stop="41773" i_length="17509"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41772" e_stop="41651" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.894" acc_prob="0.978">
            <gDNA_intron_boundary i_start="41650" i_stop="41260" i_length="391"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41259" e_stop="41168" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41167" i_stop="40779" i_length="389"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40778" e_stop="40692" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="40691" i_stop="40619" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="40618" e_stop="40318" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59806" stop="59282"/>
              <exon start="41772" stop="41651"/>
              <exon start="41259" stop="41168"/>
              <exon start="40778" stop="40692"/>
              <exon start="40618" stop="40318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319558" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATATTTCTGCCTTGTCGTCTTTCTTTTTCATCATTTTTTTTTATATATATAAAGTTTTATCTTGTGTGTAAGTAAGGGAAATAGAGGTAAAAAAAAAATGTCATGGTATTATATATAACCTTGAGAGATTCAAATTCAACCAAACCAAAATCCAAGAAGAAGAAGAATGAGTTTTCTAGCAGGAAGAGTAGCAGGAAAAGAAGGAGCTTTTTTCTTTGAAGAATCCAAACATGCCGTTACCCGTTTAGCCCAAAAGATCAACAAAAATCCAACTTCTTCTCCTTCCAATTCCACTTCTCTAAATCAAGAATCATCTTCCCCTGATGTTCTTCCTGAGATTCTTCGACATTCTTTACCTTCCAAGATTTTCCATTCTCCTTCCTCTGCAGATTCCTCACTCTCTAATACTTCCAAATGGGTTCTCCCTACTGATCCCAATACGACAAATCCCGTATCTCCAGATGCTCTTAATCCTCTCAGAGCTCATGTTTCTCTTCCAAAAGTAACCTTTGGACCTAAAAG : GTGGCAGTTGCCAGATACAGAAAACTCTGTACAAGCCTCAACGGCAAATGACTTGCGTCGCGATAAATACACACCGATTAATCCTGAAAAACTTAAAGCTGCAGCTGTGGGGATGTCTCAAA : TTGCAAAGGCATTTGCTATTGCCACTGCTCTTGTCTTAGGTGGTTCCGCCTTGACGTTTGGCTTGGCAGCATCCAAGCTAGAGTTGCACAAT : CCTGATGATATCCGGACGAAAGGGAAGGACATGGTTCAGCCAAGATTGGAAACATTCAAAGAACAGCTGAATCCTTTAAGGATTTGG : GCTGAAGAGAAGTCGAAAAAATGGCATTTGGAGAAAAAAGAACACATTAAAGAGAAGCCTTTGATAAAAGAGCTCTCTAAAATATTAGGTGCCAAGTCGTCAAACTAATGTCGATGCAGTTTATTGCAGATAGCTATGCATTCATCAGAATATTTTGTTTTCTTCTCTCTCACTGTGTAATTTTGAATAATATGATCTGTCAGCAGTTAGTATTTTCTATGTATCCTGCAGTACTACATTTTCTCTGTAAATTGCTGTGTTTTCTATGACGAATAAAAAAACATTTGATGAACATGTAACT</gDNA_template>
            <first_frame> I  I  F  L  P  C  R  L  S  F  S  S  F  F  F  I  Y  I  K  F  Y  L  V  C  K  *  G  K  *  R  *  K  K  N  V  M  V  L  Y  I  T  L  R  D  S  N  S  T  K  P  K  S  K  K  K  K  N  E  F  S  S  R  K  S  S  R  K  R  R  S  F  F  L  *  R  I  Q  T  C  R  Y  P  F  S  P  K  D  Q  Q  K  S  N  F  F  S  F  Q  F  H  F  S  K  S  R  I  I  F  P  *  C  S  S  *  D  S  S  T  F  F  T  F  Q  D  F  P  F  S  F  L  C  R  F  L  T  L  *  Y  F  Q  M  G  S  P  Y  *  S  Q  Y  D  K  S  R  I  S  R  C  S  *  S  S  Q  S  S  C  F  S  S  K  S  N  L  W  T  *  K  :  V  A  V  A  R  Y  R  K  L  C  T  S  L  N  G  K  *  L  A  S  R  *  I  H  T  D  *  S  *  K  T  *  S  C  S  C  G  D  V  S  N :   C  K  G  I  C  Y  C  H  C  S  C  L  R  W  F  R  L  D  V  W  L  G  S  I  Q  A  R  V  A  Q   : S  *  *  Y  P  D  E  R  E  G  H  G  S  A  K  I  G  N  I  Q  R  T  A  E  S  F  K  D  L   : G  *  R  E  V  E  K  M  A  F  G  E  K  R  T  H  *  R  E  A  F  D  K  R  A  L  *  N  I  R  C  Q  V  V  K  L  M  S  M  Q  F  I  A  D  S  Y  A  F  I  R  I  F  C  F  L  L  S  H  C  V  I  L  N  N  M  I  C  Q  Q  L  V  F  S  M  Y  P  A  V  L  H  F  L  C  K  L  L  C  F  L  *  R  I  K  K  H  L  M  N  M  *   </first_frame>
            <second_frame>  *  Y  F  C  L  V  V  F  L  F  H  H  F  F  L  Y  I  *  S  F  I  L  C  V  S  K  G  N  R  G  K  K  K  M  S  W  Y  Y  I  *  P  *  E  I  Q  I  Q  P  N  Q  N  P  R  R  R  R  M  S  F  L  A  G  R  V  A  G  K  E  G  A  F  F  F  E  E  S  K  H  A  V  T  R  L  A  Q  K  I  N  K  N  P  T  S  S  P  S  N  S  T  S  L  N  Q  E  S  S  S  P  D  V  L  P  E  I  L  R  H  S  L  P  S  K  I  F  H  S  P  S  S  A  D  S  S  L  S  N  T  S  K  W  V  L  P  T  D  P  N  T  T  N  P  V  S  P  D  A  L  N  P  L  R  A  H  V  S  L  P  K  V  T  F  G  P  K  R :   W  Q  L  P  D  T  E  N  S  V  Q  A  S  T  A  N  D  L  R  R  D  K  Y  T  P  I  N  P  E  K  L  K  A  A  A  V  G  M  S  Q   : I  A  K  A  F  A  I  A  T  A  L  V  L  G  G  S  A  L  T  F  G  L  A  A  S  K  L  E  L  H  N  :  P  D  D  I  R  T  K  G  K  D  M  V  Q  P  R  L  E  T  F  K  E  Q  L  N  P  L  R  I  W  :  A  E  E  K  S  K  K  W  H  L  E  K  K  E  H  I  K  E  K  P  L  I  K  E  L  S  K  I  L  G  A  K  S  S  N  *  C  R  C  S  L  L  Q  I  A  M  H  S  S  E  Y  F  V  F  F  S  L  T  V  *  F  *  I  I  *  S  V  S  S  *  Y  F  L  C  I  L  Q  Y  Y  I  F  S  V  N  C  C  V  F  Y  D  E  *  K  N  I  *  *  T  C  N  </second_frame>
            <third_frame>   N  I  S  A  L  S  S  F  F  F  I  I  F  F  Y  I  Y  K  V  L  S  C  V  *  V  R  E  I  E  V  K  K  K  C  H  G  I  I  Y  N  L  E  R  F  K  F  N  Q  T  K  I  Q  E  E  E  E  *  V  F  *  Q  E  E  *  Q  E  K  K  E  L  F  S  L  K  N  P  N  M  P  L  P  V  *  P  K  R  S  T  K  I  Q  L  L  L  L  P  I  P  L  L  *  I  K  N  H  L  P  L  M  F  F  L  R  F  F  D  I  L  Y  L  P  R  F  S  I  L  L  P  L  Q  I  P  H  S  L  I  L  P  N  G  F  S  L  L  I  P  I  R  Q  I  P  Y  L  Q  M  L  L  I  L  S  E  L  M  F  L  F  Q  K  *  P  L  D  L  K   : G  G  S  C  Q  I  Q  K  T  L  Y  K  P  Q  R  Q  M  T  C  V  A  I  N  T  H  R  L  I  L  K  N  L  K  L  Q  L  W  G  C  L  K  :  L  Q  R  H  L  L  L  P  L  L  L  S  *  V  V  P  P  *  R  L  A  W  Q  H  P  S  *  S  C  T  I :   L  M  I  S  G  R  K  G  R  T  W  F  S  Q  D  W  K  H  S  K  N  S  *  I  L  *  G  F  G :   L  K  R  S  R  K  N  G  I  W  R  K  K  N  T  L  K  R  S  L  *  *  K  S  S  L  K  Y  *  V  P  S  R  Q  T  N  V  D  A  V  Y  C  R  *  L  C  I  H  Q  N  I  L  F  S  S  L  S  L  C  N  F  E  *  Y  D  L  S  A  V  S  I  F  Y  V  S  C  S  T  T  F  S  L  *  I  A  V  F  S  M  T  N  K  K  T  F  D  E  H  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59679" stop="59282"/>
                    <exon start="41772" stop="41651"/>
                    <exon start="41259" stop="41168"/>
                    <exon start="40778" stop="40692"/>
                    <exon start="40618" stop="40511"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIQIQPNQNPRRRRMSFLAGRVAGKEGAFFFEESKHAVTRLAQKINKNPTSSPSNSTSLNQESSSPDVLPEILRHSLPSKIFHSPSSADSSLSNTSKWVLPTDPNTTNPVSPDALNPLRAHVSLPKVTFGPKRWQLPDTENSVQASTANDLRRDKYTPINPEKLKAAAVGMSQIAKAFAIATALVLGGSALTFGLAASKLELHNPDDIRTKGKDMVQPRLETFKEQLNPLRIWAEEKSKKWHLEKKEHIKEKPLIKELSKILGAKSSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="78355" PGL_stop="78873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78355" e_stop="78873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="78355" e_stop="78873" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78355" stop="78873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341961" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGAAGCACAAATAATCAATAGCAAATGTATGCAGCAAAAGAAGCCAAGATCGAGTCCAAGATCGAGTAAAATGGGTCAGCCAAGTAATCAAGAAAATAGAGTTATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTATTAAGGAAGGAAGTTGTATATAATAAGGATTGTACTTTAAAAGGGAATCCTTGTTTAATAATAACTTCCTTACCTTATCTGATAAGGACTGAAGGCAAAAGGAACTCTATAAGAAGAAGAAGACGCTGATGAAGAATATGACGACTTCACGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAAGATTACTACGTTTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTACTGTACAAAGGGTGGGTTTGGTTCTTTGTAGGGTTGAGTGTTAGTAAG</gDNA_template>
            <first_frame> T  R  S  T  N  N  Q  *  Q  M  Y  A  A  K  E  A  K  I  E  S  K  I  E  *  N  G  S  A  K  *  S  R  K  *  S  Y  L  S  K  P  K  I  I  Y  *  R  Y  K  L  I  Q  I  R  K  T  L  N  I  L  L  R  K  E  V  V  Y  N  K  D  C  T  L  K  G  N  P  C  L  I  I  T  S  L  P  Y  L  I  R  T  E  G  K  R  N  S  I  R  R  R  R  R  *  *  R  I  *  R  L  H  A  E  N  K  G  E  L  F  I  K  L  K  S  S  R  L  I  R  L  L  R  L  K  H  S  *  V  R  R  F  Y  R  V  E  L  F  V  L  F  L  F  L  I  V  V  Y  S  L  L  Y  K  G  W  V  W  F  F  V  G  L  S  V  S  K </first_frame>
            <second_frame>  Q  E  A  Q  I  I  N  S  K  C  M  Q  Q  K  K  P  R  S  S  P  R  S  S  K  M  G  Q  P  S  N  Q  E  N  R  V  I  C  Q  S  Q  K  *  Y  I  K  G  I  S  *  Y  K  *  G  K  P  *  I  Y  Y  *  G  R  K  L  Y  I  I  R  I  V  L  *  K  G  I  L  V  *  *  *  L  P  Y  L  I  *  *  G  L  K  A  K  G  T  L  *  E  E  E  D  A  D  E  E  Y  D  D  F  T  Q  R  T  R  E  N  Y  S  S  N  *  S  L  Q  G  *  *  D  Y  Y  V  *  N  I  L  E  *  E  G  F  I  V  *  N  Y  L  S  C  F  C  S  *  L  *  F  T  V  Y  C  T  K  G  G  F  G  S  L  *  G  *  V  L  V   </second_frame>
            <third_frame>   K  K  H  K  *  S  I  A  N  V  C  S  K  R  S  Q  D  R  V  Q  D  R  V  K  W  V  S  Q  V  I  K  K  I  E  L  F  V  K  A  K  N  N  I  L  K  V  *  V  D  T  N  K  E  N  L  K  Y  I  I  K  E  G  S  C  I  *  *  G  L  Y  F  K  R  E  S  L  F  N  N  N  F  L  T  L  S  D  K  D  *  R  Q  K  E  L  Y  K  K  K  K  T  L  M  K  N  M  T  T  S  R  R  E  Q  G  R  I  I  H  Q  I  E  V  F  K  V  D  K  I  T  T  F  K  T  F  L  S  K  K  V  L  S  C  R  T  I  C  L  V  F  V  L  N  C  S  L  Q  F  T  V  Q  R  V  G  L  V  L  C  R  V  E  C  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78624" stop="78869"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQKELYKKKKTLMKNMTTSRREQGRIIHQIEVFKVDKITTFKTFLSKKVLSCRTICLVFVLNCSLQFTVQRVGLVLCRVEC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="87478" PGL_stop="91035"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87478" e_stop="87789"/>
            <exon e_start="87873" e_stop="88085"/>
            <exon e_start="88172" e_stop="88372"/>
            <exon e_start="88447" e_stop="88701"/>
            <exon e_start="90361" e_stop="91035"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.902" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87478" e_stop="87789" e_length="312"/>
          </exon>
          <intron i_serial="1" don_prob="0.902" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87790" i_stop="87872" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87873" e_stop="88085" e_length="213"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88086" i_stop="88171" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88172" e_stop="88372" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="88373" i_stop="88446" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88447" e_stop="88701" e_length="255"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88702" i_stop="90360" i_length="1659"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="90361" e_stop="91035" e_length="675"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87478" stop="87789"/>
              <exon start="87873" stop="88085"/>
              <exon start="88172" stop="88372"/>
              <exon start="88447" stop="88701"/>
              <exon start="90361" stop="91035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318523" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCTCATAACTTCTCCTTTTTCTTCACTCCTAAAACCTCTTTAGGAGTGACAGTAGAAGGAGAAACAAGCAAACAAACAAAGAAAAAAAAGATCAATTTCCATCATCATGAAGAGTTTTTATTTGCACTATTTTTCTCTTCTTCTTTCATTTTCCACCATTTTTTCTTCTTCTGCTATAGCTTTTGATTATGCAGATGCTCTTTCCAAGAGTCTCCTTTACTTTGAAGCTCAAAGATCCGGTCGATTACCTTACAATCAACGCGTCACTTGGCGCGACCATTCTGGTTTAACTGATGGTTTAGAAGAAGGA : GTTGATTTAGTTGGAGGTTACTACGATGCTGGTGACCATGTGAAATTTGGTCTACCAATGGCATTTACAGTAACAATGTTGTCATGGAGTGTTATTGAATATGGTGAAGAGATTTCGTATTCGGGAGAAATTGAACATGCCTTTGAAGCTATCAAATGGGGTACTGATTATTTCATCAAAGCACATACTAGTCCAAATGTCTTATGGGCTGAG : GTCGGAGATGGAGATACTGATCATTACTGTTGGCAACGTCCAGAAGATATGACAACTTCTCGTCGATCATTTAAGATCGACGAGAATAACCCTGGCTCTGACTTAGCCGGGGAGACAGCTGCCGCGATGGCAGCTGCTTCTATTGTGTTTAGGAAAAGTAATCCGCATTACTCTCACTTACTATTGCACCATGCCCAACAG : TTATTTGAGTTTGGTGACAAGTACAGAGGAAAGTATGACAAAAGTGTGGGAGTAGTGAAAAATTATTATGCATCAGTGAGTGGGTACGAAGATGAGTTGTTGTGGGCAGCATTGTGGTTATACAAAGCCACCGACAAAGAAGATTATTTGGAGTATGTAATTAACAAGGCAAATTCATTTGGAGGTATTGGTTGGGCTATTACTGAGTTCAGTTGGGATGTTAAATTTGCTGGTCTACAAATTATTGCTTCTAAG : ATACTGCAGGAGAAAAAATACAACAAACACATTCACATACAAGAACAATATCGTTCAAAAGCCGAACACTACATATGTTCATGTCTCAACAAAAACAACGGTACTACCAACGTCAATCGTACCCCAGGCGGACTACTATACGTCCGTCAATGGAACAACATGCAATACGTATCGAACGCGGCCTTCCTCCTCACATTCTACTCGGATTTCCTTAGAAAAATCGACAAAAAAATCGTGTGTCATGGAGGAATAGTTGATCATGAAGAACTATTCAGTTTTGCTAAATCTCAAGTGGATTACATATTGGGCTCAAACCCAAAAAACATGAGTTATCTAGTGGGTTTTGGGCCAAATTATCCAAAAAGAGTACACCATAGAGGGGCCTCAATTGTGTCTTATAGAGAGAATAAAGGCTTTATTGGATGTACTCAAGGGTATGATTATTGGTACAACAAAAATGGGCCAAACCCAAATGTTTTAATTGGGGCAATTGTTGGTGGGCCTGACAATCAAGATGAATTTAATGATGACAGAGCAAATTATGTGCAAACAGAGGCTTGTACATATAATACAGCACCTCTTGTGGGTATTTTTGCTAAGTTTAATTTTTTAAGTGCACCATTAATTGCATCTTTCTAAAATATAAAATAAAATAGTATTACACAAAAAAGTGTT</gDNA_template>
            <first_frame> L  L  I  T  S  P  F  S  S  L  L  K  P  L  *  E  *  Q  *  K  E  K  Q  A  N  K  Q  R  K  K  R  S  I  S  I  I  M  K  S  F  Y  L  H  Y  F  S  L  L  L  S  F  S  T  I  F  S  S  S  A  I  A  F  D  Y  A  D  A  L  S  K  S  L  L  Y  F  E  A  Q  R  S  G  R  L  P  Y  N  Q  R  V  T  W  R  D  H  S  G  L  T  D  G  L  E  E  G  :  V  D  L  V  G  G  Y  Y  D  A  G  D  H  V  K  F  G  L  P  M  A  F  T  V  T  M  L  S  W  S  V  I  E  Y  G  E  E  I  S  Y  S  G  E  I  E  H  A  F  E  A  I  K  W  G  T  D  Y  F  I  K  A  H  T  S  P  N  V  L  W  A  E  :  V  G  D  G  D  T  D  H  Y  C  W  Q  R  P  E  D  M  T  T  S  R  R  S  F  K  I  D  E  N  N  P  G  S  D  L  A  G  E  T  A  A  A  M  A  A  A  S  I  V  F  R  K  S  N  P  H  Y  S  H  L  L  L  H  H  A  Q  Q  :  L  F  E  F  G  D  K  Y  R  G  K  Y  D  K  S  V  G  V  V  K  N  Y  Y  A  S  V  S  G  Y  E  D  E  L  L  W  A  A  L  W  L  Y  K  A  T  D  K  E  D  Y  L  E  Y  V  I  N  K  A  N  S  F  G  G  I  G  W  A  I  T  E  F  S  W  D  V  K  F  A  G  L  Q  I  I  A  S  K  :  I  L  Q  E  K  K  Y  N  K  H  I  H  I  Q  E  Q  Y  R  S  K  A  E  H  Y  I  C  S  C  L  N  K  N  N  G  T  T  N  V  N  R  T  P  G  G  L  L  Y  V  R  Q  W  N  N  M  Q  Y  V  S  N  A  A  F  L  L  T  F  Y  S  D  F  L  R  K  I  D  K  K  I  V  C  H  G  G  I  V  D  H  E  E  L  F  S  F  A  K  S  Q  V  D  Y  I  L  G  S  N  P  K  N  M  S  Y  L  V  G  F  G  P  N  Y  P  K  R  V  H  H  R  G  A  S  I  V  S  Y  R  E  N  K  G  F  I  G  C  T  Q  G  Y  D  Y  W  Y  N  K  N  G  P  N  P  N  V  L  I  G  A  I  V  G  G  P  D  N  Q  D  E  F  N  D  D  R  A  N  Y  V  Q  T  E  A  C  T  Y  N  T  A  P  L  V  G  I  F  A  K  F  N  F  L  S  A  P  L  I  A  S  F  *  N  I  K  *  N  S  I  T  Q  K  S  V </first_frame>
            <second_frame>  C  S  *  L  L  L  F  L  H  S  *  N  L  F  R  S  D  S  R  R  R  N  K  Q  T  N  K  E  K  K  D  Q  F  P  S  S  *  R  V  F  I  C  T  I  F  L  F  F  F  H  F  P  P  F  F  L  L  L  L  *  L  L  I  M  Q  M  L  F  P  R  V  S  F  T  L  K  L  K  D  P  V  D  Y  L  T  I  N  A  S  L  G  A  T  I  L  V  *  L  M  V  *  K  K  E :   L  I  *  L  E  V  T  T  M  L  V  T  M  *  N  L  V  Y  Q  W  H  L  Q  *  Q  C  C  H  G  V  L  L  N  M  V  K  R  F  R  I  R  E  K  L  N  M  P  L  K  L  S  N  G  V  L  I  I  S  S  K  H  I  L  V  Q  M  S  Y  G  L  R :   S  E  M  E  I  L  I  I  T  V  G  N  V  Q  K  I  *  Q  L  L  V  D  H  L  R  S  T  R  I  T  L  A  L  T  *  P  G  R  Q  L  P  R  W  Q  L  L  L  L  C  L  G  K  V  I  R  I  T  L  T  Y  Y  C  T  M  P  N  S :   Y  L  S  L  V  T  S  T  E  E  S  M  T  K  V  W  E  *  *  K  I  I  M  H  Q  *  V  G  T  K  M  S  C  C  G  Q  H  C  G  Y  T  K  P  P  T  K  K  I  I  W  S  M  *  L  T  R  Q  I  H  L  E  V  L  V  G  L  L  L  S  S  V  G  M  L  N  L  L  V  Y  K  L  L  L  L  R :   Y  C  R  R  K  N  T  T  N  T  F  T  Y  K  N  N  I  V  Q  K  P  N  T  T  Y  V  H  V  S  T  K  T  T  V  L  P  T  S  I  V  P  Q  A  D  Y  Y  T  S  V  N  G  T  T  C  N  T  Y  R  T  R  P  S  S  S  H  S  T  R  I  S  L  E  K  S  T  K  K  S  C  V  M  E  E  *  L  I  M  K  N  Y  S  V  L  L  N  L  K  W  I  T  Y  W  A  Q  T  Q  K  T  *  V  I  *  W  V  L  G  Q  I  I  Q  K  E  Y  T  I  E  G  P  Q  L  C  L  I  E  R  I  K  A  L  L  D  V  L  K  G  M  I  I  G  T  T  K  M  G  Q  T  Q  M  F  *  L  G  Q  L  L  V  G  L  T  I  K  M  N  L  M  M  T  E  Q  I  M  C  K  Q  R  L  V  H  I  I  Q  H  L  L  W  V  F  L  L  S  L  I  F  *  V  H  H  *  L  H  L  S  K  I  *  N  K  I  V  L  H  K  K  V   </second_frame>
            <third_frame>   A  H  N  F  S  F  F  F  T  P  K  T  S  L  G  V  T  V  E  G  E  T  S  K  Q  T  K  K  K  K  I  N  F  H  H  H  E  E  F  L  F  A  L  F  F  S  S  S  F  I  F  H  H  F  F  F  F  C  Y  S  F  *  L  C  R  C  S  F  Q  E  S  P  L  L  *  S  S  K  I  R  S  I  T  L  Q  S  T  R  H  L  A  R  P  F  W  F  N  *  W  F  R  R  R   : S  *  F  S  W  R  L  L  R  C  W  *  P  C  E  I  W  S  T  N  G  I  Y  S  N  N  V  V  M  E  C  Y  *  I  W  *  R  D  F  V  F  G  R  N  *  T  C  L  *  S  Y  Q  M  G  Y  *  L  F  H  Q  S  T  Y  *  S  K  C  L  M  G  *   : G  R  R  W  R  Y  *  S  L  L  L  A  T  S  R  R  Y  D  N  F  S  S  I  I  *  D  R  R  E  *  P  W  L  *  L  S  R  G  D  S  C  R  D  G  S  C  F  Y  C  V  *  E  K  *  S  A  L  L  S  L  T  I  A  P  C  P  T   : V  I  *  V  W  *  Q  V  Q  R  K  V  *  Q  K  C  G  S  S  E  K  L  L  C  I  S  E  W  V  R  R  *  V  V  V  G  S  I  V  V  I  Q  S  H  R  Q  R  R  L  F  G  V  C  N  *  Q  G  K  F  I  W  R  Y  W  L  G  Y  Y  *  V  Q  L  G  C  *  I  C  W  S  T  N  Y  C  F  *   : D  T  A  G  E  K  I  Q  Q  T  H  S  H  T  R  T  I  S  F  K  S  R  T  L  H  M  F  M  S  Q  Q  K  Q  R  Y  Y  Q  R  Q  S  Y  P  R  R  T  T  I  R  P  S  M  E  Q  H  A  I  R  I  E  R  G  L  P  P  H  I  L  L  G  F  P  *  K  N  R  Q  K  N  R  V  S  W  R  N  S  *  S  *  R  T  I  Q  F  C  *  I  S  S  G  L  H  I  G  L  K  P  K  K  H  E  L  S  S  G  F  W  A  K  L  S  K  K  S  T  P  *  R  G  L  N  C  V  L  *  R  E  *  R  L  Y  W  M  Y  S  R  V  *  L  L  V  Q  Q  K  W  A  K  P  K  C  F  N  W  G  N  C  W  W  A  *  Q  S  R  *  I  *  *  *  Q  S  K  L  C  A  N  R  G  L  Y  I  *  Y  S  T  S  C  G  Y  F  C  *  V  *  F  F  K  C  T  I  N  C  I  F  L  K  Y  K  I  K  *  Y  Y  T  K  K  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87535" stop="87789"/>
                    <exon start="87873" stop="88085"/>
                    <exon start="88172" stop="88372"/>
                    <exon start="88447" stop="88701"/>
                    <exon start="90361" stop="90999"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1560</number_coding_nucleotides>
                  <number_encoded_amino_acids>520</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEKQANKQRKKRSISIIMKSFYLHYFSLLLSFSTIFSSSAIAFDYADALSKSLLYFEAQRSGRLPYNQRVTWRDHSGLTDGLEEGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWSVIEYGEEISYSGEIEHAFEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQRPEDMTTSRRSFKIDENNPGSDLAGETAAAMAAASIVFRKSNPHYSHLLLHHAQQLFEFGDKYRGKYDKSVGVVKNYYASVSGYEDELLWAALWLYKATDKEDYLEYVINKANSFGGIGWAITEFSWDVKFAGLQIIASKILQEKKYNKHIHIQEQYRSKAEHYICSCLNKNNGTTNVNRTPGGLLYVRQWNNMQYVSNAAFLLTFYSDFLRKIDKKIVCHGGIVDHEELFSFAKSQVDYILGSNPKNMSYLVGFGPNYPKRVHHRGASIVSYRENKGFIGCTQGYDYWYNKNGPNPNVLIGAIVGGPDNQDEFNDDRANYVQTEACTYNTAPLVGIFAKFNFLSAPLIASF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87913" e_stop="88484"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="87913" e_stop="88484" e_length="572"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87913" stop="88484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAATTTGGTCTACCAATGGCATTTACAGTAACAATGTTGTCATGGAGTGTTATTGAATATGGTGAAGAGATTTCGTATTCGGGAGAAATTGAACATGCCTTTGAAGCTATCAAATGGGGTACTGATTATTTCATCAAAGCACATACTAGTCCAAATGTCTTATGGGCTGAGGTATTCAATTAAATTAAACACAATTTATAAATAAACATATATTATTATTATTATTTTGGATGGAATTAAAAATTTGTGATATTTAGGTCGGAGATGGAGATACTGATCATTACTGTTGGCAACGTCCAGAAGATATGACAACTTCTCGTCGATCATTTAAGATCGACGAGAATAACCCTGGCTCTGACTTAGCCGGGGAGACAGCTGCCGCGATGGCAGCTGCTTCTATTGTGTTTAGGAAAAGTAATCCGCATTACTCTCACTTACTATTGCACCATGCCCAACAGGTAATATGATTTAATTAACTAATTTAAATTATATGCACCGACCGATTGATATTATTTAATTAACTTGGATGCAGTTATTTGAGTTTGGTGACAAGTACAGAGGAAAGTATGA</gDNA_template>
            <first_frame> *  N  L  V  Y  Q  W  H  L  Q  *  Q  C  C  H  G  V  L  L  N  M  V  K  R  F  R  I  R  E  K  L  N  M  P  L  K  L  S  N  G  V  L  I  I  S  S  K  H  I  L  V  Q  M  S  Y  G  L  R  Y  S  I  K  L  N  T  I  Y  K  *  T  Y  I  I  I  I  I  L  D  G  I  K  N  L  *  Y  L  G  R  R  W  R  Y  *  S  L  L  L  A  T  S  R  R  Y  D  N  F  S  S  I  I  *  D  R  R  E  *  P  W  L  *  L  S  R  G  D  S  C  R  D  G  S  C  F  Y  C  V  *  E  K  *  S  A  L  L  S  L  T  I  A  P  C  P  T  G  N  M  I  *  L  T  N  L  N  Y  M  H  R  P  I  D  I  I  *  L  T  W  M  Q  L  F  E  F  G  D  K  Y  R  G  K  Y   </first_frame>
            <second_frame>  E  I  W  S  T  N  G  I  Y  S  N  N  V  V  M  E  C  Y  *  I  W  *  R  D  F  V  F  G  R  N  *  T  C  L  *  S  Y  Q  M  G  Y  *  L  F  H  Q  S  T  Y  *  S  K  C  L  M  G  *  G  I  Q  L  N  *  T  Q  F  I  N  K  H  I  L  L  L  L  F  W  M  E  L  K  I  C  D  I  *  V  G  D  G  D  T  D  H  Y  C  W  Q  R  P  E  D  M  T  T  S  R  R  S  F  K  I  D  E  N  N  P  G  S  D  L  A  G  E  T  A  A  A  M  A  A  A  S  I  V  F  R  K  S  N  P  H  Y  S  H  L  L  L  H  H  A  Q  Q  V  I  *  F  N  *  L  I  *  I  I  C  T  D  R  L  I  L  F  N  *  L  G  C  S  Y  L  S  L  V  T  S  T  E  E  S  M  </second_frame>
            <third_frame>   K  F  G  L  P  M  A  F  T  V  T  M  L  S  W  S  V  I  E  Y  G  E  E  I  S  Y  S  G  E  I  E  H  A  F  E  A  I  K  W  G  T  D  Y  F  I  K  A  H  T  S  P  N  V  L  W  A  E  V  F  N  *  I  K  H  N  L  *  I  N  I  Y  Y  Y  Y  Y  F  G  W  N  *  K  F  V  I  F  R  S  E  M  E  I  L  I  I  T  V  G  N  V  Q  K  I  *  Q  L  L  V  D  H  L  R  S  T  R  I  T  L  A  L  T  *  P  G  R  Q  L  P  R  W  Q  L  L  L  L  C  L  G  K  V  I  R  I  T  L  T  Y  Y  C  T  M  P  N  R  *  Y  D  L  I  N  *  F  K  L  Y  A  P  T  D  *  Y  Y  L  I  N  L  D  A  V  I  *  V  W  *  Q  V  Q  R  K  V  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88172" stop="88381"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGDGDTDHYCWQRPEDMTTSRRSFKIDENNPGSDLAGETAAAMAAASIVFRKSNPHYSHLLLHHAQQVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="95726" PGL_stop="96693"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95726" e_stop="96693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="95726" e_stop="96693" e_length="968"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95726" stop="96693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326416" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTGATGACTCTGCAGCTGCAAATGAGAATAGCAAGAATCGTTGGATAGTTTCAACAGTTACAGAAGTCGAAGAAGTGAAAATGGTGCTCAAATTGATTCCCATATGGTCCACATGCATACTTTTTTGGACAGTATACTCTCAGATGAATACCTTCACCATTGAACAAGCTACCTTCATGAACCGGAATGTTGGAAACTTTGCTGTCCCTGCAGGTTCCTTATCCGTGTTTCTCTTTATTAGCATACTTCTGTTTACTTCCATAAACGAAAGGGTCACAGTTCGTATTGCCAGAAAAATCACTCACAACAGCCAAGGAATCACAAGCCTTCAGAGAGTTGGAATTGGACTACTACTCTCTATTGTTGGTATGGTAGCTTCAGCTCTGGTAGAAAAACGACGAAGGGAACATGCCATCCATCATAACTTCAAGATAAGCGCGTTTTGGTTAGTGCCTCAATTCTTCATTGTAGGTGCTGGGGAAGCTTTTGCCTATGTAGGACAGCTAGAGTTTTTCATCAGGGAGGCACCAGAAGGGATGAAATCTATGAGCACAGGCCTATTTCTCAGCACACTCTCGATGGGATATTTCGTGAGTAGTTTGCTAGTATTCGTTGTACAGAAAGCAACAAAAGGAAGATGGCTTAAAAGCAATTTAAACAAAGGAAAACTGGATTTATTCTACTGGTTGCTAGCAGTTCTCGGAGTAATTAATTTCTTGATTTTCATTGCATTTTCAATGAAACACCAATACAAGGTGCAGAAACTTAGCAGTATTGAGGATTCTGCAGAAGAGCTCGGGAGTTGGAAGGATTTGACCCTCGACAACAAGGAAAAGAAACTCGAAGCAGACGAGAAGGTGGAAGCTTAAATACAGCATATTAGCTTTCAATGAATCATTCATTTCCAGAGTTTGTAATATAGAACCGTATTCAATTATCAAAGACGTCAATACAAATTTGCTACCA</gDNA_template>
            <first_frame> S  *  *  L  C  S  C  K  *  E  *  Q  E  S  L  D  S  F  N  S  Y  R  S  R  R  S  E  N  G  A  Q  I  D  S  H  M  V  H  M  H  T  F  L  D  S  I  L  S  D  E  Y  L  H  H  *  T  S  Y  L  H  E  P  E  C  W  K  L  C  C  P  C  R  F  L  I  R  V  S  L  Y  *  H  T  S  V  Y  F  H  K  R  K  G  H  S  S  Y  C  Q  K  N  H  S  Q  Q  P  R  N  H  K  P  S  E  S  W  N  W  T  T  T  L  Y  C  W  Y  G  S  F  S  S  G  R  K  T  T  K  G  T  C  H  P  S  *  L  Q  D  K  R  V  L  V  S  A  S  I  L  H  C  R  C  W  G  S  F  C  L  C  R  T  A  R  V  F  H  Q  G  G  T  R  R  D  E  I  Y  E  H  R  P  I  S  Q  H  T  L  D  G  I  F  R  E  *  F  A  S  I  R  C  T  E  S  N  K  R  K  M  A  *  K  Q  F  K  Q  R  K  T  G  F  I  L  L  V  A  S  S  S  R  S  N  *  F  L  D  F  H  C  I  F  N  E  T  P  I  Q  G  A  E  T  *  Q  Y  *  G  F  C  R  R  A  R  E  L  E  G  F  D  P  R  Q  Q  G  K  E  T  R  S  R  R  E  G  G  S  L  N  T  A  Y  *  L  S  M  N  H  S  F  P  E  F  V  I  *  N  R  I  Q  L  S  K  T  S  I  Q  I  C  Y   </first_frame>
            <second_frame>  L  D  D  S  A  A  A  N  E  N  S  K  N  R  W  I  V  S  T  V  T  E  V  E  E  V  K  M  V  L  K  L  I  P  I  W  S  T  C  I  L  F  W  T  V  Y  S  Q  M  N  T  F  T  I  E  Q  A  T  F  M  N  R  N  V  G  N  F  A  V  P  A  G  S  L  S  V  F  L  F  I  S  I  L  L  F  T  S  I  N  E  R  V  T  V  R  I  A  R  K  I  T  H  N  S  Q  G  I  T  S  L  Q  R  V  G  I  G  L  L  L  S  I  V  G  M  V  A  S  A  L  V  E  K  R  R  R  E  H  A  I  H  H  N  F  K  I  S  A  F  W  L  V  P  Q  F  F  I  V  G  A  G  E  A  F  A  Y  V  G  Q  L  E  F  F  I  R  E  A  P  E  G  M  K  S  M  S  T  G  L  F  L  S  T  L  S  M  G  Y  F  V  S  S  L  L  V  F  V  V  Q  K  A  T  K  G  R  W  L  K  S  N  L  N  K  G  K  L  D  L  F  Y  W  L  L  A  V  L  G  V  I  N  F  L  I  F  I  A  F  S  M  K  H  Q  Y  K  V  Q  K  L  S  S  I  E  D  S  A  E  E  L  G  S  W  K  D  L  T  L  D  N  K  E  K  K  L  E  A  D  E  K  V  E  A  *  I  Q  H  I  S  F  Q  *  I  I  H  F  Q  S  L  *  Y  R  T  V  F  N  Y  Q  R  R  Q  Y  K  F  A  T  </second_frame>
            <third_frame>   L  M  T  L  Q  L  Q  M  R  I  A  R  I  V  G  *  F  Q  Q  L  Q  K  S  K  K  *  K  W  C  S  N  *  F  P  Y  G  P  H  A  Y  F  F  G  Q  Y  T  L  R  *  I  P  S  P  L  N  K  L  P  S  *  T  G  M  L  E  T  L  L  S  L  Q  V  P  Y  P  C  F  S  L  L  A  Y  F  C  L  L  P  *  T  K  G  S  Q  F  V  L  P  E  K  S  L  T  T  A  K  E  S  Q  A  F  R  E  L  E  L  D  Y  Y  S  L  L  L  V  W  *  L  Q  L  W  *  K  N  D  E  G  N  M  P  S  I  I  T  S  R  *  A  R  F  G  *  C  L  N  S  S  L  *  V  L  G  K  L  L  P  M  *  D  S  *  S  F  S  S  G  R  H  Q  K  G  *  N  L  *  A  Q  A  Y  F  S  A  H  S  R  W  D  I  S  *  V  V  C  *  Y  S  L  Y  R  K  Q  Q  K  E  D  G  L  K  A  I  *  T  K  E  N  W  I  Y  S  T  G  C  *  Q  F  S  E  *  L  I  S  *  F  S  L  H  F  Q  *  N  T  N  T  R  C  R  N  L  A  V  L  R  I  L  Q  K  S  S  G  V  G  R  I  *  P  S  T  T  R  K  R  N  S  K  Q  T  R  R  W  K  L  K  Y  S  I  L  A  F  N  E  S  F  I  S  R  V  C  N  I  E  P  Y  S  I  I  K  D  V  N  T  N  L  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95727" stop="96596"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDDSAAANENSKNRWIVSTVTEVEEVKMVLKLIPIWSTCILFWTVYSQMNTFTIEQATFMNRNVGNFAVPAGSLSVFLFISILLFTSINERVTVRIARKITHNSQGITSLQRVGIGLLLSIVGMVASALVEKRRREHAIHHNFKISAFWLVPQFFIVGAGEAFAYVGQLEFFIREAPEGMKSMSTGLFLSTLSMGYFVSSLLVFVVQKATKGRWLKSNLNKGKLDLFYWLLAVLGVINFLIFIAFSMKHQYKVQKLSSIEDSAEELGSWKDLTLDNKEKKLEADEKVEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="97125" PGL_stop="99943"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97125" e_stop="97401"/>
            <exon e_start="98604" e_stop="98765"/>
            <exon e_start="98893" e_stop="99014"/>
            <exon e_start="99741" e_stop="99794"/>
            <exon e_start="99929" e_stop="99943"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.633" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97125" e_stop="97401" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="97402" i_stop="98603" i_length="1202"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98604" e_stop="98765" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.633">
            <gDNA_intron_boundary i_start="98766" i_stop="98892" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98893" e_stop="99014" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99015" i_stop="99740" i_length="726"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99741" e_stop="99794" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99795" i_stop="99928" i_length="134"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99929" e_stop="99943" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97125" stop="97401"/>
              <exon start="98604" stop="98765"/>
              <exon start="98893" stop="99014"/>
              <exon start="99741" stop="99794"/>
              <exon start="99929" stop="99943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326044" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACTCTCCACTTTCTACGATTTCACTTGAAAAAAAATAAAATTAAACTTCACATTTTTCTCACCTCTCACATCTTCTCCTTCTCGTCACACACACATTTCCAATTAGTTAAGCACGAAAAACATGGCAGCGGCAGCCGTCGGCCCCGGACGATCGACCTCGTCGTACAGCGAAGTCCAACACAACCGTCTCATTGTATCGCTTCCTCTGCCTTCGGTCCTCAAAAAGCCCTTTTCAGTCATTGATGGCCCTCCTAGTTCCGCCGCTGGAAATCCAG : GTGAAATTGCAAAGCTTTTTCCAAATCTGTTTGGGCAGCCTTCCGTGTCGTTACTTCCAGGTCACACATCTGGAGCTGCATTGGATCATACTCTAAAAGTCGGGGTTGTGTTGTCCGGAGGACAGGCTCCTGGTGGGCACAATGTCATCTCTGGAATTTTTG : ACTATTTGCAGGAGAAAACGAAAAATAGCACACTCTATGGATTCAAGGGAGGTCCAGCAGGGATAATGAACTGTAAATATGTAGAGTTGACAGCGGATTTTGTTTATCCTTACAGAAATCAA : GGTGGCTTTGATATGATCTGTAGTGGTAGAGACAAGATAGAAAGTGATGAACAG : TTTAATCAAGCTGCT</gDNA_template>
            <first_frame> *  L  S  T  F  Y  D  F  T  *  K  K  I  K  L  N  F  T  F  F  S  P  L  T  S  S  P  S  R  H  T  H  I  S  N  *  L  S  T  K  N  M  A  A  A  A  V  G  P  G  R  S  T  S  S  Y  S  E  V  Q  H  N  R  L  I  V  S  L  P  L  P  S  V  L  K  K  P  F  S  V  I  D  G  P  P  S  S  A  A  G  N  P   : G  E  I  A  K  L  F  P  N  L  F  G  Q  P  S  V  S  L  L  P  G  H  T  S  G  A  A  L  D  H  T  L  K  V  G  V  V  L  S  G  G  Q  A  P  G  G  H  N  V  I  S  G  I  F   : D  Y  L  Q  E  K  T  K  N  S  T  L  Y  G  F  K  G  G  P  A  G  I  M  N  C  K  Y  V  E  L  T  A  D  F  V  Y  P  Y  R  N  Q  :  G  G  F  D  M  I  C  S  G  R  D  K  I  E  S  D  E  Q  :  F  N  Q  A  A </first_frame>
            <second_frame>  N  S  P  L  S  T  I  S  L  E  K  K  *  N  *  T  S  H  F  S  H  L  S  H  L  L  L  L  V  T  H  T  F  P  I  S  *  A  R  K  T  W  Q  R  Q  P  S  A  P  D  D  R  P  R  R  T  A  K  S  N  T  T  V  S  L  Y  R  F  L  C  L  R  S  S  K  S  P  F  Q  S  L  M  A  L  L  V  P  P  L  E  I  Q  :  V  K  L  Q  S  F  F  Q  I  C  L  G  S  L  P  C  R  Y  F  Q  V  T  H  L  E  L  H  W  I  I  L  *  K  S  G  L  C  C  P  E  D  R  L  L  V  G  T  M  S  S  L  E  F  L  :  T  I  C  R  R  K  R  K  I  A  H  S  M  D  S  R  E  V  Q  Q  G  *  *  T  V  N  M  *  S  *  Q  R  I  L  F  I  L  T  E  I  K :   V  A  L  I  *  S  V  V  V  E  T  R  *  K  V  M  N  S :   L  I  K  L   </second_frame>
            <third_frame>   T  L  H  F  L  R  F  H  L  K  K  N  K  I  K  L  H  I  F  L  T  S  H  I  F  S  F  S  S  H  T  H  F  Q  L  V  K  H  E  K  H  G  S  G  S  R  R  P  R  T  I  D  L  V  V  Q  R  S  P  T  Q  P  S  H  C  I  A  S  S  A  F  G  P  Q  K  A  L  F  S  H  *  W  P  S  *  F  R  R  W  K  S  R :   *  N  C  K  A  F  S  K  S  V  W  A  A  F  R  V  V  T  S  R  S  H  I  W  S  C  I  G  S  Y  S  K  S  R  G  C  V  V  R  R  T  G  S  W  W  A  Q  C  H  L  W  N  F  * :   L  F  A  G  E  N  E  K  *  H  T  L  W  I  Q  G  R  S  S  R  D  N  E  L  *  I  C  R  V  D  S  G  F  C  L  S  L  Q  K  S   : R  W  L  *  Y  D  L  *  W  *  R  Q  D  R  K  *  *  T   : V  *  S  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97233" stop="97401"/>
                    <exon start="98604" stop="98765"/>
                    <exon start="98893" stop="99014"/>
                    <exon start="99741" stop="99794"/>
                    <exon start="99929" stop="99943"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSTKNMAAAAVGPGRSTSSYSEVQHNRLIVSLPLPSVLKKPFSVIDGPPSSAAGNPGEIAKLFPNLFGQPSVSLLPGHTSGAALDHTLKVGVVLSGGQAPGGHNVISGIFDYLQEKTKNSTLYGFKGGPAGIMNCKYVELTADFVYPYRNQGGFDMICSGRDKIESDEQFNQAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="100586" PGL_stop="102039"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100586" e_stop="100624"/>
            <exon e_start="100777" e_stop="100865"/>
            <exon e_start="101318" e_stop="101449"/>
            <exon e_start="101646" e_stop="101816"/>
            <exon e_start="101927" e_stop="102039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.861" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.515" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100586" e_stop="100624" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.861" acc_prob="0.901">
            <gDNA_intron_boundary i_start="100625" i_stop="100776" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100777" e_stop="100865" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.851">
            <gDNA_intron_boundary i_start="100866" i_stop="101317" i_length="452"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101318" e_stop="101449" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101450" i_stop="101645" i_length="196"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101646" e_stop="101816" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.515" acc_prob="1.000">
            <gDNA_intron_boundary i_start="101817" i_stop="101926" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="101927" e_stop="102039" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100586" stop="100624"/>
              <exon start="100777" stop="100865"/>
              <exon start="101318" stop="101449"/>
              <exon start="101646" stop="101816"/>
              <exon start="101927" stop="102039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329126" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATGATAGATGCTCGTTCAACAGGAAAATACTATCACT : TTGTAAGGCTTATGGGTCGTGCTGCATCACACATCACATTGGAGTGTGCTCTTCAAACCCATCCTAATATTACCATCATTGGCGAAGAG : GTTGCAGCCCAGAAGCAAACACTTAAAAGTGTTACAGATTACATCGTAGGAGTAATTTGTAAACGGGCAAAACTTGGTTATAATTATGGGGTTATACTAATACCCGAAGGCCTGATTGACTTCATTCCAGAG : GTGCAACAGTTGATTGCAGAGCTCAATGAAATCCTGGCTCATGATGTTATTGATGCAGCTGGCAGTTGGAAAAAGAAACTCCAAAGCCAGTCTCGCGATCTCTTTGAACTCCTACCACAAGCAATTCAGGAGCAGTTACTTCTTGAAAGAGATCCACATGGAAATGTCCAG : GTTGCCAAAATAGAAACTGAGAAAATGCTTATTCAAATGGTGGAAGCTGAACTTGAAAGCAAGAGGAAGGAAGGTTCATATACCAAACAATTTAAAGGGCAGTCTCATTTTTT</gDNA_template>
            <first_frame> S  *  *  M  L  V  Q  Q  E  N  T  I  T  :  L  *  G  L  W  V  V  L  H  H  T  S  H  W  S  V  L  F  K  P  I  L  I  L  P  S  L  A  K  R :   L  Q  P  R  S  K  H  L  K  V  L  Q  I  T  S  *  E  *  F  V  N  G  Q  N  L  V  I  I  M  G  L  Y  *  Y  P  K  A  *  L  T  S  F  Q  R :   C  N  S  *  L  Q  S  S  M  K  S  W  L  M  M  L  L  M  Q  L  A  V  G  K  R  N  S  K  A  S  L  A  I  S  L  N  S  Y  H  K  Q  F  R  S  S  Y  F  L  K  E  I  H  M  E  M  S  R :   L  P  K  *  K  L  R  K  C  L  F  K  W  W  K  L  N  L  K  A  R  G  R  K  V  H  I  P  N  N  L  K  G  S  L  I  F  </first_frame>
            <second_frame>  H  D  R  C  S  F  N  R  K  I  L  S  L :   C  K  A  Y  G  S  C  C  I  T  H  H  I  G  V  C  S  S  N  P  S  *  Y  Y  H  H  W  R  R   : G  C  S  P  E  A  N  T  *  K  C  Y  R  L  H  R  R  S  N  L  *  T  G  K  T  W  L  *  L  W  G  Y  T  N  T  R  R  P  D  *  L  H  S  R   : G  A  T  V  D  C  R  A  Q  *  N  P  G  S  *  C  Y  *  C  S  W  Q  L  E  K  E  T  P  K  P  V  S  R  S  L  *  T  P  T  T  S  N  S  G  A  V  T  S  *  K  R  S  T  W  K  C  P   : G  C  Q  N  R  N  *  E  N  A  Y  S  N  G  G  S  *  T  *  K  Q  E  E  G  R  F  I  Y  Q  T  I  *  R  A  V  S  F  F </second_frame>
            <third_frame>   M  I  D  A  R  S  T  G  K  Y  Y  H   : F  V  R  L  M  G  R  A  A  S  H  I  T  L  E  C  A  L  Q  T  H  P  N  I  T  I  I  G  E  E  :  V  A  A  Q  K  Q  T  L  K  S  V  T  D  Y  I  V  G  V  I  C  K  R  A  K  L  G  Y  N  Y  G  V  I  L  I  P  E  G  L  I  D  F  I  P  E  :  V  Q  Q  L  I  A  E  L  N  E  I  L  A  H  D  V  I  D  A  A  G  S  W  K  K  K  L  Q  S  Q  S  R  D  L  F  E  L  L  P  Q  A  I  Q  E  Q  L  L  L  E  R  D  P  H  G  N  V  Q  :  V  A  K  I  E  T  E  K  M  L  I  Q  M  V  E  A  E  L  E  S  K  R  K  E  G  S  Y  T  K  Q  F  K  G  Q  S  H  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100588" stop="100624"/>
                    <exon start="100777" stop="100865"/>
                    <exon start="101318" stop="101449"/>
                    <exon start="101646" stop="101816"/>
                    <exon start="101927" stop="102037"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAQKQTLKSVTDYIVGVICKRAKLGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDVIDAAGSWKKKLQSQSRDLFELLPQAIQEQLLLERDPHGNVQVAKIETEKMLIQMVEAELESKRKEGSYTKQFKGQSHF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="102263" PGL_stop="104845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102263" e_stop="102283"/>
            <exon e_start="102414" e_stop="102498"/>
            <exon e_start="103311" e_stop="103355"/>
            <exon e_start="103728" e_stop="103796"/>
            <exon e_start="104406" e_stop="104845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.228" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.740" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102263" e_stop="102283" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.228" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102284" i_stop="102413" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102414" e_stop="102498" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102499" i_stop="103310" i_length="812"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103311" e_stop="103355" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.740">
            <gDNA_intron_boundary i_start="103356" i_stop="103727" i_length="372"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103728" e_stop="103796" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="103797" i_stop="104405" i_length="609"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="104406" e_stop="104845" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102263" stop="102283"/>
              <exon start="102414" stop="102498"/>
              <exon start="103311" stop="103355"/>
              <exon start="103728" stop="103796"/>
              <exon start="104406" stop="104845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344267" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACAGGCTTGATTTCCTCT : GTGGGAAATTTGAAAGCTCCAGTTGAAGACTGGACGGTCGGTGGAACAGCACTAACATCTTTGATGGATGTCGAAAGGAGACATG : GTAAGTTCAAGCCTGTGATTAAGAAGGCAATGGTGGAACTAGAAG : GTGCTCCTTTCAAAAAATTTGCTTCCTTGCGAGAAGAGTGGGCTCTAAAGAATCGATACTTCAGCCCTG : GTCCACTTCAATTTGTTGGCCCAACATCAAATGAAACCAATCACACTTTAATGCTGGAGTTGGGAGCCAAAGCTTAATTGATTCCCAAATCTGAACTCGAACTTCTGTTCCTTTGACATTTTCATCAAAGCACATTCATCCTATATAGCAAATGGACTCAGCAGATGGCAAAAACTTGCTTACAGTCACAACATGCTGGTTATTTCTCGGAGAGTTGATCTTATTCTTGGACGGAAAAAAAAGTTTTTCACATTATTCAACATTATCTTTTGAGAAAATTGTTTTAGTCCTGCTGTAGATTTATGGTCTTTATATTAGCAGATAGCACATTTCTGAAGCTAAAAGAGATGTTCTTTACTACTAAGCATTAGAATTTTTTGTAGCCAAAGTGTACACTTTTCATGCATTTGTTTAACTACTTCCATTTTCTTTCAAAATAA</gDNA_template>
            <first_frame> K  T  G  L  I  S  S  :  V  G  N  L  K  A  P  V  E  D  W  T  V  G  G  T  A  L  T  S  L  M  D  V  E  R  R  H   : G  K  F  K  P  V  I  K  K  A  M  V  E  L  E   : G  A  P  F  K  K  F  A  S  L  R  E  E  W  A  L  K  N  R  Y  F  S  P   : G  P  L  Q  F  V  G  P  T  S  N  E  T  N  H  T  L  M  L  E  L  G  A  K  A  *  L  I  P  K  S  E  L  E  L  L  F  L  *  H  F  H  Q  S  T  F  I  L  Y  S  K  W  T  Q  Q  M  A  K  T  C  L  Q  S  Q  H  A  G  Y  F  S  E  S  *  S  Y  S  W  T  E  K  K  V  F  H  I  I  Q  H  Y  L  L  R  K  L  F  *  S  C  C  R  F  M  V  F  I  L  A  D  S  T  F  L  K  L  K  E  M  F  F  T  T  K  H  *  N  F  L  *  P  K  C  T  L  F  M  H  L  F  N  Y  F  H  F  L  S  K  * </first_frame>
            <second_frame>  K  Q  A  *  F  P  L :   W  E  I  *  K  L  Q  L  K  T  G  R  S  V  E  Q  H  *  H  L  *  W  M  S  K  G  D  M  :  V  S  S  S  L  *  L  R  R  Q  W  W  N  *  K  :  V  L  L  S  K  N  L  L  P  C  E  K  S  G  L  *  R  I  D  T  S  A  L  :  V  H  F  N  L  L  A  Q  H  Q  M  K  P  I  T  L  *  C  W  S  W  E  P  K  L  N  *  F  P  N  L  N  S  N  F  C  S  F  D  I  F  I  K  A  H  S  S  Y  I  A  N  G  L  S  R  W  Q  K  L  A  Y  S  H  N  M  L  V  I  S  R  R  V  D  L  I  L  G  R  K  K  K  F  F  T  L  F  N  I  I  F  *  E  N  C  F  S  P  A  V  D  L  W  S  L  Y  *  Q  I  A  H  F  *  S  *  K  R  C  S  L  L  L  S  I  R  I  F  C  S  Q  S  V  H  F  S  C  I  C  L  T  T  S  I  F  F  Q  N   </second_frame>
            <third_frame>   N  R  L  D  F  L   : C  G  K  F  E  S  S  S  *  R  L  D  G  R  W  N  S  T  N  I  F  D  G  C  R  K  E  T  W :   *  V  Q  A  C  D  *  E  G  N  G  G  T  R  R :   C  S  F  Q  K  I  C  F  L  A  R  R  V  G  S  K  E  S  I  L  Q  P  W :   S  T  S  I  C  W  P  N  I  K  *  N  Q  S  H  F  N  A  G  V  G  S  Q  S  L  I  D  S  Q  I  *  T  R  T  S  V  P  L  T  F  S  S  K  H  I  H  P  I  *  Q  M  D  S  A  D  G  K  N  L  L  T  V  T  T  C  W  L  F  L  G  E  L  I  L  F  L  D  G  K  K  S  F  S  H  Y  S  T  L  S  F  E  K  I  V  L  V  L  L  *  I  Y  G  L  Y  I  S  R  *  H  I  S  E  A  K  R  D  V  L  Y  Y  *  A  L  E  F  F  V  A  K  V  Y  T  F  H  A  F  V  *  L  L  P  F  S  F  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102263" stop="102283"/>
                    <exon start="102414" stop="102498"/>
                    <exon start="103311" stop="103355"/>
                    <exon start="103728" stop="103796"/>
                    <exon start="104406" stop="104482"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTGLISSVGNLKAPVEDWTVGGTALTSLMDVERRHGKFKPVIKKAMVELEGAPFKKFASLREEWALKNRYFSPGPLQFVGPTSNETNHTLMLELGAKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="108720" PGL_stop="112408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108720" e_stop="109190"/>
            <exon e_start="110125" e_stop="110398"/>
            <exon e_start="111670" e_stop="111765"/>
            <exon e_start="111858" e_stop="112408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108720" e_stop="109190" e_length="471"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.946">
            <gDNA_intron_boundary i_start="109191" i_stop="110124" i_length="934"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110125" e_stop="110398" e_length="274"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110399" i_stop="111669" i_length="1271"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111670" e_stop="111765" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111766" i_stop="111857" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="111858" e_stop="112408" e_length="551"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108720" stop="109190"/>
              <exon start="110125" stop="110398"/>
              <exon start="111670" stop="111765"/>
              <exon start="111858" stop="112408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325953" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGACGAACAAGTATCAGAATTCAGCAAAAATGGAAAATCAGGCAAATCTCGCCGCCGACGCACAAAGAGAAGAACTTGTCAACACATTCTGTGAGATTACTTCTGCTTCTAAACCTGAAGCCCTTTTCTTCCTTGAAAGCCATAACTTCGATTTGGATGCTGCTGTTTCCACCTTCTTCGAGAACAACACCTTTAACTCCGCCTCTGCTGCTGCCGTTGATGACGGCGATCAAGCTCCAATCCATGCTTCCGCCGCCACTCATGTTGCTGCTGCGCAAGGCCGTTCTCCGTCGCGCTCGCGATCTCCTTCTCCACCTCGACCTAGAAACCCTCCAACTTCTAGCCGCGGCGCTGCTGGGAGGAGAACTGGTGGAATTCACTCTTTTTCTGATCTGAATCGTCGTCCTGTTACTGGGTCTGGGAGTGACTCCGATGAGCCTCAAGAGTATTATACTGGCGGAGAGAAAAG : CGGAATGCTTGTTCAAGATCCATCTAAGGCAAATGATGTGAACTCAATATTCGATCAAGCTAGACAACATGCAACTGTTGAAGGACCTCCAGCATCATCTGGCTCTAGAAGCTTTATTGGAACTGCTAGAAGACTTACGGGTGAGACTGTGTCTGCTGCTCCTCAGCCACCTGAGAGTGTTACTCATACCATCACTTTCTGGACCAATGGGTTCACTATTGATGATGGACCCTTGCGGAGGTTTGATGATCCAGAAAATGCCCCTTTCTTAGAG : AGTATCCGGAAGTCTGAGTGCCCAAAAGAACTTGAGCCAGAAGACAGGAGGACGTCTGTCCGAGTTAATCTGACAAGGAGAGAGGAGGACTGCCCT : GTACCAGAGAAGCGCCGTGCATTATTTCAGGGTGTGGGAAGAACTTTAGGTAGCACTAGCAATGCTGAACAAGTAGACTCAACTGCTACTATCTCATCATTCACCGCAGCTCCATCCCCATCAGTGGGCCTAGTTGTTGATCAGTCACAGCCCTCAACCTCAATTCAACTAAGGTTGGCAGATGGTACACGAATGGTTTCTCGGTTTAACTACCAACACACAATCAGGGATATTCGAGGGTTTATTGATGCATCAAGGCCTGGTGGGTCAAGGAATTATCAACTGCAGACAGTGGGCTTTCCTCCCAAACAACTCTCTGATCTGGACCAGACGGTAGAGCAAGCTGGCCTAGCCAATTCAGTTGTGATTCAGAAACTTTAGAGGGTTACGACTTCTGTGTTATATCTGCTGCAGTTACACCTAGAACCATGCTGATTTCAATGCTATCTTTAAACTACACATACATTCCTAATCACATAGATAATGTTTCTCTTGGAGCCTACTGATGGAATTATTTTTTGAAGTTGAGCAACATTCAGAAAGTTCCTTCT</gDNA_template>
            <first_frame> E  D  E  Q  V  S  E  F  S  K  N  G  K  S  G  K  S  R  R  R  R  T  K  R  R  T  C  Q  H  I  L  *  D  Y  F  C  F  *  T  *  S  P  F  L  P  *  K  P  *  L  R  F  G  C  C  C  F  H  L  L  R  E  Q  H  L  *  L  R  L  C  C  C  R  *  *  R  R  S  S  S  N  P  C  F  R  R  H  S  C  C  C  C  A  R  P  F  S  V  A  L  A  I  S  F  S  T  S  T  *  K  P  S  N  F  *  P  R  R  C  W  E  E  N  W  W  N  S  L  F  F  *  S  E  S  S  S  C  Y  W  V  W  E  *  L  R  *  A  S  R  V  L  Y  W  R  R  E  K  :  R  N  A  C  S  R  S  I  *  G  K  *  C  E  L  N  I  R  S  S  *  T  T  C  N  C  *  R  T  S  S  I  I  W  L  *  K  L  Y  W  N  C  *  K  T  Y  G  *  D  C  V  C  C  S  S  A  T  *  E  C  Y  S  Y  H  H  F  L  D  Q  W  V  H  Y  *  *  W  T  L  A  E  V  *  *  S  R  K  C  P  F  L  R   : E  Y  P  E  V  *  V  P  K  R  T  *  A  R  R  Q  E  D  V  C  P  S  *  S  D  K  E  R  G  G  L  P   : C  T  R  E  A  P  C  I  I  S  G  C  G  K  N  F  R  *  H  *  Q  C  *  T  S  R  L  N  C  Y  Y  L  I  I  H  R  S  S  I  P  I  S  G  P  S  C  *  S  V  T  A  L  N  L  N  S  T  K  V  G  R  W  Y  T  N  G  F  S  V  *  L  P  T  H  N  Q  G  Y  S  R  V  Y  *  C  I  K  A  W  W  V  K  E  L  S  T  A  D  S  G  L  S  S  Q  T  T  L  *  S  G  P  D  G  R  A  S  W  P  S  Q  F  S  C  D  S  E  T  L  E  G  Y  D  F  C  V  I  S  A  A  V  T  P  R  T  M  L  I  S  M  L  S  L  N  Y  T  Y  I  P  N  H  I  D  N  V  S  L  G  A  Y  *  W  N  Y  F  L  K  L  S  N  I  Q  K  V  P  S </first_frame>
            <second_frame>  K  T  N  K  Y  Q  N  S  A  K  M  E  N  Q  A  N  L  A  A  D  A  Q  R  E  E  L  V  N  T  F  C  E  I  T  S  A  S  K  P  E  A  L  F  F  L  E  S  H  N  F  D  L  D  A  A  V  S  T  F  F  E  N  N  T  F  N  S  A  S  A  A  A  V  D  D  G  D  Q  A  P  I  H  A  S  A  A  T  H  V  A  A  A  Q  G  R  S  P  S  R  S  R  S  P  S  P  P  R  P  R  N  P  P  T  S  S  R  G  A  A  G  R  R  T  G  G  I  H  S  F  S  D  L  N  R  R  P  V  T  G  S  G  S  D  S  D  E  P  Q  E  Y  Y  T  G  G  E  K  S :   G  M  L  V  Q  D  P  S  K  A  N  D  V  N  S  I  F  D  Q  A  R  Q  H  A  T  V  E  G  P  P  A  S  S  G  S  R  S  F  I  G  T  A  R  R  L  T  G  E  T  V  S  A  A  P  Q  P  P  E  S  V  T  H  T  I  T  F  W  T  N  G  F  T  I  D  D  G  P  L  R  R  F  D  D  P  E  N  A  P  F  L  E  :  S  I  R  K  S  E  C  P  K  E  L  E  P  E  D  R  R  T  S  V  R  V  N  L  T  R  R  E  E  D  C  P  :  V  P  E  K  R  R  A  L  F  Q  G  V  G  R  T  L  G  S  T  S  N  A  E  Q  V  D  S  T  A  T  I  S  S  F  T  A  A  P  S  P  S  V  G  L  V  V  D  Q  S  Q  P  S  T  S  I  Q  L  R  L  A  D  G  T  R  M  V  S  R  F  N  Y  Q  H  T  I  R  D  I  R  G  F  I  D  A  S  R  P  G  G  S  R  N  Y  Q  L  Q  T  V  G  F  P  P  K  Q  L  S  D  L  D  Q  T  V  E  Q  A  G  L  A  N  S  V  V  I  Q  K  L  *  R  V  T  T  S  V  L  Y  L  L  Q  L  H  L  E  P  C  *  F  Q  C  Y  L  *  T  T  H  T  F  L  I  T  *  I  M  F  L  L  E  P  T  D  G  I  I  F  *  S  *  A  T  F  R  K  F  L   </second_frame>
            <third_frame>   R  R  T  S  I  R  I  Q  Q  K  W  K  I  R  Q  I  S  P  P  T  H  K  E  K  N  L  S  T  H  S  V  R  L  L  L  L  L  N  L  K  P  F  S  S  L  K  A  I  T  S  I  W  M  L  L  F  P  P  S  S  R  T  T  P  L  T  P  P  L  L  L  P  L  M  T  A  I  K  L  Q  S  M  L  P  P  P  L  M  L  L  L  R  K  A  V  L  R  R  A  R  D  L  L  L  H  L  D  L  E  T  L  Q  L  L  A  A  A  L  L  G  G  E  L  V  E  F  T  L  F  L  I  *  I  V  V  L  L  L  G  L  G  V  T  P  M  S  L  K  S  I  I  L  A  E  R  K   : A  E  C  L  F  K  I  H  L  R  Q  M  M  *  T  Q  Y  S  I  K  L  D  N  M  Q  L  L  K  D  L  Q  H  H  L  A  L  E  A  L  L  E  L  L  E  D  L  R  V  R  L  C  L  L  L  L  S  H  L  R  V  L  L  I  P  S  L  S  G  P  M  G  S  L  L  M  M  D  P  C  G  G  L  M  I  Q  K  M  P  L  S  *  R :   V  S  G  S  L  S  A  Q  K  N  L  S  Q  K  T  G  G  R  L  S  E  L  I  *  Q  G  E  R  R  T  A  L :   Y  Q  R  S  A  V  H  Y  F  R  V  W  E  E  L  *  V  A  L  A  M  L  N  K  *  T  Q  L  L  L  S  H  H  S  P  Q  L  H  P  H  Q  W  A  *  L  L  I  S  H  S  P  Q  P  Q  F  N  *  G  W  Q  M  V  H  E  W  F  L  G  L  T  T  N  T  Q  S  G  I  F  E  G  L  L  M  H  Q  G  L  V  G  Q  G  I  I  N  C  R  Q  W  A  F  L  P  N  N  S  L  I  W  T  R  R  *  S  K  L  A  *  P  I  Q  L  *  F  R  N  F  R  G  L  R  L  L  C  Y  I  C  C  S  Y  T  *  N  H  A  D  F  N  A  I  F  K  L  H  I  H  S  *  S  H  R  *  C  F  S  W  S  L  L  M  E  L  F  F  E  V  E  Q  H  S  E  S  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108721" stop="109190"/>
                    <exon start="110125" stop="110398"/>
                    <exon start="111670" stop="111765"/>
                    <exon start="111858" stop="112238"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1218</number_coding_nucleotides>
                  <number_encoded_amino_acids>406</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTNKYQNSAKMENQANLAADAQREELVNTFCEITSASKPEALFFLESHNFDLDAAVSTFFENNTFNSASAAAVDDGDQAPIHASAATHVAAAQGRSPSRSRSPSPPRPRNPPTSSRGAAGRRTGGIHSFSDLNRRPVTGSGSDSDEPQEYYTGGEKSGMLVQDPSKANDVNSIFDQARQHATVEGPPASSGSRSFIGTARRLTGETVSAAPQPPESVTHTITFWTNGFTIDDGPLRRFDDPENAPFLESIRKSECPKELEPEDRRTSVRVNLTRREEDCPVPEKRRALFQGVGRTLGSTSNAEQVDSTATISSFTAAPSPSVGLVVDQSQPSTSIQLRLADGTRMVSRFNYQHTIRDIRGFIDASRPGGSRNYQLQTVGFPPKQLSDLDQTVEQAGLANSVVIQKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="119241" PGL_stop="117792"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119241" e_stop="118978"/>
            <exon e_start="118898" e_stop="118701"/>
            <exon e_start="118628" e_stop="118466"/>
            <exon e_start="118362" e_stop="117792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.998" e_score="0.955"/>
          <exon-intron don_prob="0.980" acc_prob="0.838" e_score="0.994"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119241" e_stop="118978" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="118977" i_stop="118899" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="118898" e_stop="118701" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="0.998">
            <gDNA_intron_boundary i_start="118700" i_stop="118629" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="118628" e_stop="118466" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.838">
            <gDNA_intron_boundary i_start="118465" i_stop="118363" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="118362" e_stop="117792" e_length="571"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119241" stop="118978"/>
              <exon start="118898" stop="118746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119228" stop="118978"/>
              <exon start="118898" stop="118701"/>
              <exon start="118628" stop="118466"/>
              <exon start="118362" stop="117792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119196" stop="118978"/>
              <exon start="118898" stop="118701"/>
              <exon start="118628" stop="118466"/>
              <exon start="118362" stop="117863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATATCTCTTTCAAAAGTTGCAAAAATAAGTAATAAGTAATATAAATGGCTAAATTTGGCGATTTGGGTAATCTTCTAGTGTTGTGTATACTACTAGGAATAGTTGGTTCTAGCTATGGTCAGTTGCAGCTCAACTTCTATGCAAAGAGCTGTCCGCAAGCAGAAAAGATAATTCAAGATTATGTGTATAAGCAAATCCCAAAGGCTCCGTCTCTTGCACCTGCGTTGCTCAGAATGCATTTCCACGATTGCTTTGTCAGG : GGTTGTGATGGTTCTGTACTCCTGAATTTCACTTCGAGCACTAAAAACCAGACTGAAAAAGTGGCTGTTCCTAATCAAACGCTGAGAGGCTTCTCATTTATCGATGGTGTGAAGAAAGCATTGGAAGCTGAATGCCCTGGAGTTGTGTCATGTGCGGATATTGTTGCCTTGGTTGCTAGAGACTCTGTTGTGGTCACA : GGAGGCCCTTACTGGAAGGTTCCAACTGGTAGAAGAGATGGAAGAATATCAAACGCCTCGGAAGCCTTGGCAAACATCCCTCCTCCGACAAGTAACTTTTCCAGTCTCCAGACGTCTTTTGCCAGCAAGGGTCTTGACCTAAAAGACTTGGTACTATTGTCTG : GTGCACATACCATTGGAGTCTCTCACTGTCCGTCATTTTCATCACGTTTATACAATTTTACTGGAGTTTGGGGTAAAAAAGATCCATCTCTAGACAGCGAATATGCAGCTATTCTTAAGATGAAGAAATGCAAATCCATCAATGACAACACCACAATTGTCGAAATGGATCCTGGAAGCTCCAGTAAATTTGATCTTAGCTACTTCCAGCTTGTGCTCAAGAGAAGAGGGCTATTCCAATCTGATGCAGCCTTGACAACAAGTGCGACAACAAAGTCATTCATCAACCAGTTAGTACAAGGATCACTGGAACAATTCTATGCCGAGTTTGGTGTAGCAATGGAGAAAATGGGAAAGATTGAGGTCAAGACCGGCTCTGCTGGTGAGATTAGGAAGCACTGTGCAGTTGTGAATAGTTAAGAGCTGTCTTTTTCCCAAATTCCAATATTCGTGTGTTCGTATTTTGTATGTAATCTCTGTGTGAATGATTCGGGATAACATGTATCATTTCTTTTTGTAGTTATTCCGATATGATCGTTTTCTTGAAATAAAGCTAAGATTCCAAGAAGAGC</gDNA_template>
            <first_frame> K  N  I  S  F  K  S  C  K  N  K  *  *  V  I  *  M  A  K  F  G  D  L  G  N  L  L  V  L  C  I  L  L  G  I  V  G  S  S  Y  G  Q  L  Q  L  N  F  Y  A  K  S  C  P  Q  A  E  K  I  I  Q  D  Y  V  Y  K  Q  I  P  K  A  P  S  L  A  P  A  L  L  R  M  H  F  H  D  C  F  V  R  :  G  C  D  G  S  V  L  L  N  F  T  S  S  T  K  N  Q  T  E  K  V  A  V  P  N  Q  T  L  R  G  F  S  F  I  D  G  V  K  K  A  L  E  A  E  C  P  G  V  V  S  C  A  D  I  V  A  L  V  A  R  D  S  V  V  V  T  :  G  G  P  Y  W  K  V  P  T  G  R  R  D  G  R  I  S  N  A  S  E  A  L  A  N  I  P  P  P  T  S  N  F  S  S  L  Q  T  S  F  A  S  K  G  L  D  L  K  D  L  V  L  L  S   : G  A  H  T  I  G  V  S  H  C  P  S  F  S  S  R  L  Y  N  F  T  G  V  W  G  K  K  D  P  S  L  D  S  E  Y  A  A  I  L  K  M  K  K  C  K  S  I  N  D  N  T  T  I  V  E  M  D  P  G  S  S  S  K  F  D  L  S  Y  F  Q  L  V  L  K  R  R  G  L  F  Q  S  D  A  A  L  T  T  S  A  T  T  K  S  F  I  N  Q  L  V  Q  G  S  L  E  Q  F  Y  A  E  F  G  V  A  M  E  K  M  G  K  I  E  V  K  T  G  S  A  G  E  I  R  K  H  C  A  V  V  N  S  *  E  L  S  F  S  Q  I  P  I  F  V  C  S  Y  F  V  C  N  L  C  V  N  D  S  G  *  H  V  S  F  L  F  V  V  I  P  I  *  S  F  S  *  N  K  A  K  I  P  R  R   </first_frame>
            <second_frame>  K  I  S  L  S  K  V  A  K  I  S  N  K  *  Y  K  W  L  N  L  A  I  W  V  I  F  *  C  C  V  Y  Y  *  E  *  L  V  L  A  M  V  S  C  S  S  T  S  M  Q  R  A  V  R  K  Q  K  R  *  F  K  I  M  C  I  S  K  S  Q  R  L  R  L  L  H  L  R  C  S  E  C  I  S  T  I  A  L  S  G :   V  V  M  V  L  Y  S  *  I  S  L  R  A  L  K  T  R  L  K  K  W  L  F  L  I  K  R  *  E  A  S  H  L  S  M  V  *  R  K  H  W  K  L  N  A  L  E  L  C  H  V  R  I  L  L  P  W  L  L  E  T  L  L  W  S  Q :   E  A  L  T  G  R  F  Q  L  V  E  E  M  E  E  Y  Q  T  P  R  K  P  W  Q  T  S  L  L  R  Q  V  T  F  P  V  S  R  R  L  L  P  A  R  V  L  T  *  K  T  W  Y  Y  C  L  :  V  H  I  P  L  E  S  L  T  V  R  H  F  H  H  V  Y  T  I  L  L  E  F  G  V  K  K  I  H  L  *  T  A  N  M  Q  L  F  L  R  *  R  N  A  N  P  S  M  T  T  P  Q  L  S  K  W  I  L  E  A  P  V  N  L  I  L  A  T  S  S  L  C  S  R  E  E  G  Y  S  N  L  M  Q  P  *  Q  Q  V  R  Q  Q  S  H  S  S  T  S  *  Y  K  D  H  W  N  N  S  M  P  S  L  V  *  Q  W  R  K  W  E  R  L  R  S  R  P  A  L  L  V  R  L  G  S  T  V  Q  L  *  I  V  K  S  C  L  F  P  K  F  Q  Y  S  C  V  R  I  L  Y  V  I  S  V  *  M  I  R  D  N  M  Y  H  F  F  L  *  L  F  R  Y  D  R  F  L  E  I  K  L  R  F  Q  E  E  </second_frame>
            <third_frame>   K  Y  L  F  Q  K  L  Q  K  *  V  I  S  N  I  N  G  *  I  W  R  F  G  *  S  S  S  V  V  Y  T  T  R  N  S  W  F  *  L  W  S  V  A  A  Q  L  L  C  K  E  L  S  A  S  R  K  D  N  S  R  L  C  V  *  A  N  P  K  G  S  V  S  C  T  C  V  A  Q  N  A  F  P  R  L  L  C  Q   : G  L  *  W  F  C  T  P  E  F  H  F  E  H  *  K  P  D  *  K  S  G  C  S  *  S  N  A  E  R  L  L  I  Y  R  W  C  E  E  S  I  G  S  *  M  P  W  S  C  V  M  C  G  Y  C  C  L  G  C  *  R  L  C  C  G  H   : R  R  P  L  L  E  G  S  N  W  *  K  R  W  K  N  I  K  R  L  G  S  L  G  K  H  P  S  S  D  K  *  L  F  Q  S  P  D  V  F  C  Q  Q  G  S  *  P  K  R  L  G  T  I  V  W :   C  T  Y  H  W  S  L  S  L  S  V  I  F  I  T  F  I  Q  F  Y  W  S  L  G  *  K  R  S  I  S  R  Q  R  I  C  S  Y  S  *  D  E  E  M  Q  I  H  Q  *  Q  H  H  N  C  R  N  G  S  W  K  L  Q  *  I  *  S  *  L  L  P  A  C  A  Q  E  K  R  A  I  P  I  *  C  S  L  D  N  K  C  D  N  K  V  I  H  Q  P  V  S  T  R  I  T  G  T  I  L  C  R  V  W  C  S  N  G  E  N  G  K  D  *  G  Q  D  R  L  C  W  *  D  *  E  A  L  C  S  C  E  *  L  R  A  V  F  F  P  N  S  N  I  R  V  F  V  F  C  M  *  S  L  C  E  *  F  G  I  T  C  I  I  S  F  C  S  Y  S  D  M  I  V  F  L  K  *  S  *  D  S  K  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119193" stop="118978"/>
                    <exon start="118898" stop="118701"/>
                    <exon start="118628" stop="118466"/>
                    <exon start="118362" stop="117944"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAKFGDLGNLLVLCILLGIVGSSYGQLQLNFYAKSCPQAEKIIQDYVYKQIPKAPSLAPALLRMHFHDCFVRGCDGSVLLNFTSSTKNQTEKVAVPNQTLRGFSFIDGVKKALEAECPGVVSCADIVALVARDSVVVTGGPYWKVPTGRRDGRISNASEALANIPPPTSNFSSLQTSFASKGLDLKDLVLLSGAHTIGVSHCPSFSSRLYNFTGVWGKKDPSLDSEYAAILKMKKCKSINDNTTIVEMDPGSSSKFDLSYFQLVLKRRGLFQSDAALTTSATTKSFINQLVQGSLEQFYAEFGVAMEKMGKIEVKTGSAGEIRKHCAVVNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="122561" PGL_stop="124918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122561" e_stop="122660"/>
            <exon e_start="124035" e_stop="124918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122561" e_stop="122660" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="122661" i_stop="124034" i_length="1374"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="124035" e_stop="124918" e_length="884"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122561" stop="122660"/>
              <exon start="124035" stop="124918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321969" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAACACTTTACTCTGTTCTTCAAGGGTTTTAGAACCAATCTTCCAATCCTCTGCTTCATCTTGCTTTTTGCTTCTACAAAATCTAAAACGAAAACTG : CCGAGGCTGACTCATTTTTCTTGTGATAGCAATACAAATATCGAGGGTGTCGTATGGCGAGTCTCATAACTATGCCTGCTTTAAGCCACTTATCCACCAACACTATCAGCCTAGAACGAAGAAATTTATGTGCATCCTCCAGGAGACGTCGAGGAGTTAGGGCAATGATGACAGAAAAACCACTGGAGGAGCTGTATCATGTGAGAGTAGAGAGAAATGTGACAAAAGATCGACTAATGGAGCTTGGTGTTCAACGATGGTCAATGTGGAAAACCGGCAAATGCAAGTTACCTTGGGATTGGCATGTAGACCAGTTGGTTTACATTGAAGAAGGTGAGGTAAGGGTTGTACCTGAAGGAAGCAAAAGATTTATGCAGTTTGTAGCAGGCGACCTTGTCCGCTATCCAAAATGGTTTGAAGCTGATCTCTACTTTAATGACTTCTACCAAGAGCGATATAGATTTCAAGCATATGGAGATGACTAGTGAATCAATTTCCTACAACTAGGCTCTTAATTCCCGGGCTTCTAGTTACTGCACTTGCTAGTTATCTGTTTCATAAGCATATTTAGATTGCTGTTGTAATACAAATGGTAGAACATGGTCTTTCTAAATGGTAAGGTGGCCAGATAACATTCAATCCATTAGTGGTACGAATGATTTATCTTTTCACCGGCCAATTCCGACATAGATCTTGACTACAATCTTCCGTCATCTCCTCTCTGGATGATAAACGTTTTTTTTTTCGGCCACCAGTTAGTAAAAAGATACTGCAACCTGTTTCTTCATCATCATTGTTACATTGGAAGATTTGGTCGGTATGTATTGTCAGTTAAAATACCAACACTATTGTCATTTATCAGTTACTTTGAGATTGTTTTTCAA</gDNA_template>
            <first_frame> S  K  H  F  T  L  F  F  K  G  F  R  T  N  L  P  I  L  C  F  I  L  L  F  A  S  T  K  S  K  T  K  T   : A  E  A  D  S  F  F  L  *  *  Q  Y  K  Y  R  G  C  R  M  A  S  L  I  T  M  P  A  L  S  H  L  S  T  N  T  I  S  L  E  R  R  N  L  C  A  S  S  R  R  R  R  G  V  R  A  M  M  T  E  K  P  L  E  E  L  Y  H  V  R  V  E  R  N  V  T  K  D  R  L  M  E  L  G  V  Q  R  W  S  M  W  K  T  G  K  C  K  L  P  W  D  W  H  V  D  Q  L  V  Y  I  E  E  G  E  V  R  V  V  P  E  G  S  K  R  F  M  Q  F  V  A  G  D  L  V  R  Y  P  K  W  F  E  A  D  L  Y  F  N  D  F  Y  Q  E  R  Y  R  F  Q  A  Y  G  D  D  *  *  I  N  F  L  Q  L  G  S  *  F  P  G  F  *  L  L  H  L  L  V  I  C  F  I  S  I  F  R  L  L  L  *  Y  K  W  *  N  M  V  F  L  N  G  K  V  A  R  *  H  S  I  H  *  W  Y  E  *  F  I  F  S  P  A  N  S  D  I  D  L  D  Y  N  L  P  S  S  P  L  W  M  I  N  V  F  F  F  G  H  Q  L  V  K  R  Y  C  N  L  F  L  H  H  H  C  Y  I  G  R  F  G  R  Y  V  L  S  V  K  I  P  T  L  L  S  F  I  S  Y  F  E  I  V  F  Q </first_frame>
            <second_frame>  Q  N  T  L  L  C  S  S  R  V  L  E  P  I  F  Q  S  S  A  S  S  C  F  L  L  L  Q  N  L  K  R  K  L  :  P  R  L  T  H  F  S  C  D  S  N  T  N  I  E  G  V  V  W  R  V  S  *  L  C  L  L  *  A  T  Y  P  P  T  L  S  A  *  N  E  E  I  Y  V  H  P  P  G  D  V  E  E  L  G  Q  *  *  Q  K  N  H  W  R  S  C  I  M  *  E  *  R  E  M  *  Q  K  I  D  *  W  S  L  V  F  N  D  G  Q  C  G  K  P  A  N  A  S  Y  L  G  I  G  M  *  T  S  W  F  T  L  K  K  V  R  *  G  L  Y  L  K  E  A  K  D  L  C  S  L  *  Q  A  T  L  S  A  I  Q  N  G  L  K  L  I  S  T  L  M  T  S  T  K  S  D  I  D  F  K  H  M  E  M  T  S  E  S  I  S  Y  N  *  A  L  N  S  R  A  S  S  Y  C  T  C  *  L  S  V  S  *  A  Y  L  D  C  C  C  N  T  N  G  R  T  W  S  F  *  M  V  R  W  P  D  N  I  Q  S  I  S  G  T  N  D  L  S  F  H  R  P  I  P  T  *  I  L  T  T  I  F  R  H  L  L  S  G  *  *  T  F  F  F  S  A  T  S  *  *  K  D  T  A  T  C  F  F  I  I  I  V  T  L  E  D  L  V  G  M  Y  C  Q  L  K  Y  Q  H  Y  C  H  L  S  V  T  L  R  L  F  F   </second_frame>
            <third_frame>   K  T  L  Y  S  V  L  Q  G  F  *  N  Q  S  S  N  P  L  L  H  L  A  F  C  F  Y  K  I  *  N  E  N  C :   R  G  *  L  I  F  L  V  I  A  I  Q  I  S  R  V  S  Y  G  E  S  H  N  Y  A  C  F  K  P  L  I  H  Q  H  Y  Q  P  R  T  K  K  F  M  C  I  L  Q  E  T  S  R  S  *  G  N  D  D  R  K  T  T  G  G  A  V  S  C  E  S  R  E  K  C  D  K  R  S  T  N  G  A  W  C  S  T  M  V  N  V  E  N  R  Q  M  Q  V  T  L  G  L  A  C  R  P  V  G  L  H  *  R  R  *  G  K  G  C  T  *  R  K  Q  K  I  Y  A  V  C  S  R  R  P  C  P  L  S  K  M  V  *  S  *  S  L  L  *  *  L  L  P  R  A  I  *  I  S  S  I  W  R  *  L  V  N  Q  F  P  T  T  R  L  L  I  P  G  L  L  V  T  A  L  A  S  Y  L  F  H  K  H  I  *  I  A  V  V  I  Q  M  V  E  H  G  L  S  K  W  *  G  G  Q  I  T  F  N  P  L  V  V  R  M  I  Y  L  F  T  G  Q  F  R  H  R  S  *  L  Q  S  S  V  I  S  S  L  D  D  K  R  F  F  F  R  P  P  V  S  K  K  I  L  Q  P  V  S  S  S  S  L  L  H  W  K  I  W  S  V  C  I  V  S  *  N  T  N  T  I  V  I  Y  Q  L  L  *  D  C  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124064" stop="124519"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYKYRGCRMASLITMPALSHLSTNTISLERRNLCASSRRRRGVRAMMTEKPLEELYHVRVERNVTKDRLMELGVQRWSMWKTGKCKLPWDWHVDQLVYIEEGEVRVVPEGSKRFMQFVAGDLVRYPKWFEADLYFNDFYQERYRFQAYGDD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124694" stop="124918"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIFSPANSDIDLDYNLPSSPLWMINVFFFGHQLVKRYCNLFLHHHCYIGRFGRYVLSVKIPTLLSFISYFEIVFQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="130403" PGL_stop="125598"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130403" e_stop="129479"/>
            <exon e_start="126026" e_stop="125598"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.998" e_score="0.997"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="130403" e_stop="129479" e_length="925"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.998">
            <gDNA_intron_boundary i_start="129478" i_stop="126027" i_length="3452"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="126026" e_stop="125598" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130403" stop="129479"/>
              <exon start="126026" stop="125598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTTCAGAAAAGCAAAATCTTTTAATTAGGAAATTACAAATGTGTTGCGTGCTGTTTGATTTTGGTGACCCGACGAAGAATGTGAAGGAGAAGGATGTCAAGAGGCAGACATTGCTTGAATTAGTTGATTATATTTCAGCTGTGAGTTCCAAGTTTAATGAAGTCACAATGCAAGAATTAACGAAAATGGTTGCTGCCAATTTGTTTAGGACATTACCTTCGTTTAATCATGACAACGGGCTACTGGATATGTTTGATCCAGAAGAGGATGAGCCCACGATGGAACCCTCGTGGCCTCACCTTCAGGTTGTTTATGAACTTCTTTTGCGATTTGTGGCTTCATCGGAGACGGATGCTAAGCTTGCAAAAAGATACATTGACCACTCTTTTGTCTTGAGATTGCTTGAACTGTTTGATTCAGAGGACCAACGGGAGCGTGAGTACTTGAAAACAATTCTTCATCGTGTATATGGGAAGTTCATGGTGCATAGGCCATTTATCAGGAAAGCCATAAATAATATATTTTACCGTTTTATCTTTGAGACTGAGAAGCACAATGGAATTGCAGAATTGCTGGAGATCTTGGGCAGTATAATCAATGGATTTGCTCTGCCTTTAAAGGAAGAGCACAAGCTTTTTCTTGTCCGTGCATTGATTCCCCTTCACAAACCTAAATGCGCAGCCATGTACCACCAACAACTCATGTATTGTATCACACAGTTTGTGGAGAAAGACTTTAAGTTGTCAGACATCGTGATCAGAGGACTTCTGAAGTACTGGCCAGTCACCAATAGTAGCAAGGAGGTCATGTTTCTTGGTGAGTTGGAGGAGGTTCTGGAAGCTACCCAAGCTGCAGAGTTTCAACGGTGCATGGTCCCTTTGTTCCGTCAGATTGGTCGTTGTCTCAACAGCTCTCATTTTCAG : GTAGCTGAACGTGCTCTGTTCCTGTGGAATAACGATCACATAAGAAATCTTATCGTTCAGAATCGTGAAGTGATTTTACCCTTAATTTTTCCACTCTTGGAGAAAAACACCCGTGGTCATTGGAACCAAGCTGTTCAAAGTCTGACGTTGAACGTAAGGAAGATCTTTTCAGATGCTGATCAAGCACTTTTTGATGAGTGTTTGGAGAAATTCAAAGAAGATGAGAGAAAAGATAAGGAGACACAGGAGAAGCGTGAACTGACCTGGAAACGCTTAGAAGATATAGCAGCATCCAACTTTGTGAGTAATGAAGCTGTGCTCATCTCAAGACTTGCTTCCTCTGTTGTCATTGCCAGCACCACCAATTAACAACAAATTTGGGTAGTTGGAACCATAGATGAAGGCCCCAGAATTGTATTTTGTTACTTG</gDNA_template>
            <first_frame> R  F  R  K  A  K  S  F  N  *  E  I  T  N  V  L  R  A  V  *  F  W  *  P  D  E  E  C  E  G  E  G  C  Q  E  A  D  I  A  *  I  S  *  L  Y  F  S  C  E  F  Q  V  *  *  S  H  N  A  R  I  N  E  N  G  C  C  Q  F  V  *  D  I  T  F  V  *  S  *  Q  R  A  T  G  Y  V  *  S  R  R  G  *  A  H  D  G  T  L  V  A  S  P  S  G  C  L  *  T  S  F  A  I  C  G  F  I  G  D  G  C  *  A  C  K  K  I  H  *  P  L  F  C  L  E  I  A  *  T  V  *  F  R  G  P  T  G  A  *  V  L  E  N  N  S  S  S  C  I  W  E  V  H  G  A  *  A  I  Y  Q  E  S  H  K  *  Y  I  L  P  F  Y  L  *  D  *  E  A  Q  W  N  C  R  I  A  G  D  L  G  Q  Y  N  Q  W  I  C  S  A  F  K  G  R  A  Q  A  F  S  C  P  C  I  D  S  P  S  Q  T  *  M  R  S  H  V  P  P  T  T  H  V  L  Y  H  T  V  C  G  E  R  L  *  V  V  R  H  R  D  Q  R  T  S  E  V  L  A  S  H  Q  *  *  Q  G  G  H  V  S  W  *  V  G  G  G  S  G  S  Y  P  S  C  R  V  S  T  V  H  G  P  F  V  P  S  D  W  S  L  S  Q  Q  L  S  F  S   : G  S  *  T  C  S  V  P  V  E  *  R  S  H  K  K  S  Y  R  S  E  S  *  S  D  F  T  L  N  F  S  T  L  G  E  K  H  P  W  S  L  E  P  S  C  S  K  S  D  V  E  R  K  E  D  L  F  R  C  *  S  S  T  F  *  *  V  F  G  E  I  Q  R  R  *  E  K  R  *  G  D  T  G  E  A  *  T  D  L  E  T  L  R  R  Y  S  S  I  Q  L  C  E  *  *  S  C  A  H  L  K  T  C  F  L  C  C  H  C  Q  H  H  Q  L  T  T  N  L  G  S  W  N  H  R  *  R  P  Q  N  C  I  L  L  L  </first_frame>
            <second_frame>  G  S  E  K  Q  N  L  L  I  R  K  L  Q  M  C  C  V  L  F  D  F  G  D  P  T  K  N  V  K  E  K  D  V  K  R  Q  T  L  L  E  L  V  D  Y  I  S  A  V  S  S  K  F  N  E  V  T  M  Q  E  L  T  K  M  V  A  A  N  L  F  R  T  L  P  S  F  N  H  D  N  G  L  L  D  M  F  D  P  E  E  D  E  P  T  M  E  P  S  W  P  H  L  Q  V  V  Y  E  L  L  L  R  F  V  A  S  S  E  T  D  A  K  L  A  K  R  Y  I  D  H  S  F  V  L  R  L  L  E  L  F  D  S  E  D  Q  R  E  R  E  Y  L  K  T  I  L  H  R  V  Y  G  K  F  M  V  H  R  P  F  I  R  K  A  I  N  N  I  F  Y  R  F  I  F  E  T  E  K  H  N  G  I  A  E  L  L  E  I  L  G  S  I  I  N  G  F  A  L  P  L  K  E  E  H  K  L  F  L  V  R  A  L  I  P  L  H  K  P  K  C  A  A  M  Y  H  Q  Q  L  M  Y  C  I  T  Q  F  V  E  K  D  F  K  L  S  D  I  V  I  R  G  L  L  K  Y  W  P  V  T  N  S  S  K  E  V  M  F  L  G  E  L  E  E  V  L  E  A  T  Q  A  A  E  F  Q  R  C  M  V  P  L  F  R  Q  I  G  R  C  L  N  S  S  H  F  Q  :  V  A  E  R  A  L  F  L  W  N  N  D  H  I  R  N  L  I  V  Q  N  R  E  V  I  L  P  L  I  F  P  L  L  E  K  N  T  R  G  H  W  N  Q  A  V  Q  S  L  T  L  N  V  R  K  I  F  S  D  A  D  Q  A  L  F  D  E  C  L  E  K  F  K  E  D  E  R  K  D  K  E  T  Q  E  K  R  E  L  T  W  K  R  L  E  D  I  A  A  S  N  F  V  S  N  E  A  V  L  I  S  R  L  A  S  S  V  V  I  A  S  T  T  N  *  Q  Q  I  W  V  V  G  T  I  D  E  G  P  R  I  V  F  C  Y  L </second_frame>
            <third_frame>   V  Q  K  S  K  I  F  *  L  G  N  Y  K  C  V  A  C  C  L  I  L  V  T  R  R  R  M  *  R  R  R  M  S  R  G  R  H  C  L  N  *  L  I  I  F  Q  L  *  V  P  S  L  M  K  S  Q  C  K  N  *  R  K  W  L  L  P  I  C  L  G  H  Y  L  R  L  I  M  T  T  G  Y  W  I  C  L  I  Q  K  R  M  S  P  R  W  N  P  R  G  L  T  F  R  L  F  M  N  F  F  C  D  L  W  L  H  R  R  R  M  L  S  L  Q  K  D  T  L  T  T  L  L  S  *  D  C  L  N  C  L  I  Q  R  T  N  G  S  V  S  T  *  K  Q  F  F  I  V  Y  M  G  S  S  W  C  I  G  H  L  S  G  K  P  *  I  I  Y  F  T  V  L  S  L  R  L  R  S  T  M  E  L  Q  N  C  W  R  S  W  A  V  *  S  M  D  L  L  C  L  *  R  K  S  T  S  F  F  L  S  V  H  *  F  P  F  T  N  L  N  A  Q  P  C  T  T  N  N  S  C  I  V  S  H  S  L  W  R  K  T  L  S  C  Q  T  S  *  S  E  D  F  *  S  T  G  Q  S  P  I  V  A  R  R  S  C  F  L  V  S  W  R  R  F  W  K  L  P  K  L  Q  S  F  N  G  A  W  S  L  C  S  V  R  L  V  V  V  S  T  A  L  I  F  R :   *  L  N  V  L  C  S  C  G  I  T  I  T  *  E  I  L  S  F  R  I  V  K  *  F  Y  P  *  F  F  H  S  W  R  K  T  P  V  V  I  G  T  K  L  F  K  V  *  R  *  T  *  G  R  S  F  Q  M  L  I  K  H  F  L  M  S  V  W  R  N  S  K  K  M  R  E  K  I  R  R  H  R  R  S  V  N  *  P  G  N  A  *  K  I  *  Q  H  P  T  L  *  V  M  K  L  C  S  S  Q  D  L  L  P  L  L  S  L  P  A  P  P  I  N  N  K  F  G  *  L  E  P  *  M  K  A  P  E  L  Y  F  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130402" stop="129479"/>
                    <exon start="126026" stop="125658"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1290</number_coding_nucleotides>
                  <number_encoded_amino_acids>430</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSEKQNLLIRKLQMCCVLFDFGDPTKNVKEKDVKRQTLLELVDYISAVSSKFNEVTMQELTKMVAANLFRTLPSFNHDNGLLDMFDPEEDEPTMEPSWPHLQVVYELLLRFVASSETDAKLAKRYIDHSFVLRLLELFDSEDQREREYLKTILHRVYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCAAMYHQQLMYCITQFVEKDFKLSDIVIRGLLKYWPVTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLIVQNREVILPLIFPLLEKNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLEKFKEDERKDKETQEKRELTWKRLEDIAASNFVSNEAVLISRLASSVVIASTTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="128375" e_stop="127883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="128375" e_stop="127883" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128375" stop="127883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U347067" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCAACAGATACTATTTGCATGCTTCTATTTTTACTTATAACATTAGTTTTCCAGCAATGGGCAGAAAAGATTGATCAAGGATGATTCTCGGTTATGGCCATTCATGGGAGGTGGAATATAAATTTTAATTTCCTTGTTATTCTCCGGTTACTATATTGAGAACTTAAGACACAAGTTCCTTTCTTGAGTTTCAGCGTGTATGTCTTTTTCCTTGTTGTCACCAAAGAAGTTTGATTAAAGCCACATGAGGTGTTCAGCTCACCAGCTTTTCACATCTTGGATACGAGAAGCTGTGCAATTTTGGGCAGAAGTTAGAACAATTTACTACTACTGTACTGTAACTGCGCTACTACTATTATTGCTACTACTTTCTATAGAGTATTGCCATGATAGGAAATGTTAATTTTGGCATTTATAAAAGAAGTTAATTTGCTATGATGGACAGATGGAGTAAAATAGAAAGCAGGTAAGACTTCCAATTCAAAATGAA</gDNA_template>
            <first_frame> V  S  T  D  T  I  C  M  L  L  F  L  L  I  T  L  V  F  Q  Q  W  A  E  K  I  D  Q  G  *  F  S  V  M  A  I  H  G  R  W  N  I  N  F  N  F  L  V  I  L  R  L  L  Y  *  E  L  K  T  Q  V  P  F  L  S  F  S  V  Y  V  F  F  L  V  V  T  K  E  V  *  L  K  P  H  E  V  F  S  S  P  A  F  H  I  L  D  T  R  S  C  A  I  L  G  R  S  *  N  N  L  L  L  L  Y  C  N  C  A  T  T  I  I  A  T  T  F  Y  R  V  L  P  *  *  E  M  L  I  L  A  F  I  K  E  V  N  L  L  *  W  T  D  G  V  K  *  K  A  G  K  T  S  N  S  K  *  </first_frame>
            <second_frame>  F  Q  Q  I  L  F  A  C  F  Y  F  Y  L  *  H  *  F  S  S  N  G  Q  K  R  L  I  K  D  D  S  R  L  W  P  F  M  G  G  G  I  *  I  L  I  S  L  L  F  S  G  Y  Y  I  E  N  L  R  H  K  F  L  S  *  V  S  A  C  M  S  F  S  L  L  S  P  K  K  F  D  *  S  H  M  R  C  S  A  H  Q  L  F  T  S  W  I  R  E  A  V  Q  F  W  A  E  V  R  T  I  Y  Y  Y  C  T  V  T  A  L  L  L  L  L  L  L  L  S  I  E  Y  C  H  D  R  K  C  *  F  W  H  L  *  K  K  L  I  C  Y  D  G  Q  M  E  *  N  R  K  Q  V  R  L  P  I  Q  N  E </second_frame>
            <third_frame>   F  N  R  Y  Y  L  H  A  S  I  F  T  Y  N  I  S  F  P  A  M  G  R  K  D  *  S  R  M  I  L  G  Y  G  H  S  W  E  V  E  Y  K  F  *  F  P  C  Y  S  P  V  T  I  L  R  T  *  D  T  S  S  F  L  E  F  Q  R  V  C  L  F  P  C  C  H  Q  R  S  L  I  K  A  T  *  G  V  Q  L  T  S  F  S  H  L  G  Y  E  K  L  C  N  F  G  Q  K  L  E  Q  F  T  T  T  V  L  *  L  R  Y  Y  Y  Y  C  Y  Y  F  L  *  S  I  A  M  I  G  N  V  N  F  G  I  Y  K  R  S  *  F  A  M  M  D  R  W  S  K  I  E  S  R  *  D  F  Q  F  K  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0034N13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 54 chains have been computed
$ 
$ memory statistics:
$ 226640 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 10301 bytes was the average size of a spliced alignment
$ 22472 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1605 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 66 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-23 03:41:36
-->
