<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-22 20:05:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E207783" ref_strand="+" ref_description="SGN-E207783 [cLEC-32-O20]">
      <seq>tttttcctcctttgagcctccattaatggacgttgaagaattccttaacctctttgattttcactggtttgaatatcaaattctcaaacccaaacgccccttttctacaacaaccccaattcttgaagaaaccccaaaactttcaaaaactccaacttttatggtcagatctcaaagtgacctctgtttaagctctaaagattacatctttgattctatttccgagaaatcacaatccccatctccaaaatctgttcttgaagctaaacttcagccaattctgtctggtaaagaatacaatgaactcaaatcttcccctgaagcagctgttaaaaacagagcaaattgcagaagcagaaagaagaagagtaataacagtgaaagtttatcagagctggaatttgaagagctaaaagggtttatggatcttggatttgagttttcagagaaagataaagattcaaatttggtttcaataattcctggattgaaaagactaggaatggaaaatgaaaggggttttgatgaaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="4542" stop="3413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="3710" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E207783" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="3710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCTCCTTTGAGCCTCCATTAATGGACGTTGAAGAATTCCTTAACCTCTTTGATTTTCACTGGTTTGAATATCAAATTCTCAAACCCAAACGCCCCTTTTCTACAACAACCCCAATTCTTGAAGAAACCCCAAAACTTTCAAAAACTCCAACTTTTATGGTCAGATCTCAAAGTGACCTCTGTTTAAGCTCTAAAGATTACATCTTTGATTCTATTTCCGAGAAATCACAATCCCCATCTCCAAAATCTGTTCTTGAAGCTAAACTTCAGCCAATTCTGTCTGGTAAAGAATACAATGAACTCAAATCTTCCCCTGAAGCAGCTGTTAAAAACAGAGCCAATTGCAAAAGCCGAAAGAAGAAAAGTTATTACGGTAAAAGTTTATCAAAGCTGAAATTGAAAGAGCTAAAAAGGTTTATGGATTCTGGGAATTGATTTTCCAAAGAAAGAATAAGATTCAAA-TTGGGTTCAAAAATTCCGGAATTGAAAA-ACTAGGGATGG-AAATGAAA-GGGTTTTGGTAAAATAAATA</genome_strand>
        <mrna_strand>TTTTTCCTCCTTTGAGCCTCCATTAATGGACGTTGAAGAATTCCTTAACCTCTTTGATTTTCACTGGTTTGAATATCAAATTCTCAAACCCAAACGCCCCTTTTCTACAACAACCCCAATTCTTGAAGAAACCCCAAAACTTTCAAAAACTCCAACTTTTATGGTCAGATCTCAAAGTGACCTCTGTTTAAGCTCTAAAGATTACATCTTTGATTCTATTTCCGAGAAATCACAATCCCCATCTCCAAAATCTGTTCTTGAAGCTAAACTTCAGCCAATTCTGTCTGGTAAAGAATACAATGAACTCAAATCTTCCCCTGAAGCAGCTGTTAAAAACAGAGCAAATTGCAGAAGCAGAAAGAAGAAGAGTAATAACAGTGAAAGTTTATCAGAGCTGGAATTTGAAGAGCTAAAAGGGTTTATGGA-TCTTGGATTTGAGTTTTCAGAGAAAGATAAAGATTCAAATTTGGTTTCAATAATTCCTGGATTGAAAAGACTAGGAATGGAAAATGAAAGGGGTTTTGATGAAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E286347" ref_strand="+" ref_description="SGN-E286347 [cLES-11-G6]">
      <seq>ttgatccattatttggtcagttcttgatttttctgtaaaaaaaaatggctcaattgttgtcacctgtttgtacagattcactaaaattacagaacacagttcagtgtttctatacaagaagtaaagttccaattttgggtaataattttagctcaatgggtgtttttggaaagaagagaggaggattagggaggattaaagttgcttatcaagattctgctgctgcatctgaggaaattgctgatgatttttatgctgttttgggtttgcttcctgatgctacacctgctcaaataaagaaggcatactatagttgcatgaaagcttgccatccagatttgagtggtgatgatcccgagaccacaaatttttgcatgtttatcaatgaggtctatgagattcttagtgatccagtgcaaaggagagtttatgatgagatccatgggtacacagccacagcaattaaccctttcctgagcgattcatcgccgaaagatcatgtatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="13019" stop="15152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13295" g_stop="13556" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13557" i_stop="14541" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14542" g_stop="14670" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="398" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14671" i_stop="14743" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14744" g_stop="14852" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="507" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E286347" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13295" e_stop="13556"/>
          <exon e_start="14542" e_stop="14670"/>
          <exon e_start="14744" e_stop="14852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAT-CATTATT-GGTCAGT-CTTGATTT-TCTGTAA-AAAAA-TGGCTCAATGGTTGTCACCTG-TTGTACAGATTCACTAAAATTACGGACCACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTGGTAATTTACAACTTTTTTTTTTTTTTTTTTGCATTTTACTTGTCAAAGATCAAATTTTTATTGCTGCTTGGTGTATGGGGTAAGGTCATTTGAAGCTGTTTTTTTGCTTTTCATGTTGTAGTTTCTGTTTTTGTGATTACTTGCAATGAATTTCTCAGTAAAGAGGTAATTCATTTATGTAGTAATTTTTGTGTAAGTTGTATAATGTTCGGTAGATAGTTAGGAAGTAAGTTATTCACGTAAAAAATAATATGATATTTTTGTGTAAGTTGTATAATGTTATGTAGCTAGTTAGGAAGTAAGTTATTCACGTAAAAAATGATACGATATTTTTGTGTAAGTTGTATAATGTTCGGTAGCTAGTTTGGAAGTAAATTATTCATGTAAAAAATGATATGATATTTTTGTGTAAGTTGTATAATGTTCGGTAGCTTGTTAGTAAGTAAGTTATTCATGTGAAAATTGATATGATGCAAGGCTTGCAATTTAGAAACTCGCATAACTAATACATGTATAAGTTATGAGGGAATTGGTAATAATCTTATGCGGGGAGAAGATGGAATAATTAATACGTGCATAATTTAATCAGCTACCAAGCATCATTAATATTATTAAGGAAGATACACCATGAGTTTATAGTAACAAAAAAATATCAGTTGTTGTACTTTATCAGATTCAAGAAGCTCGATTTGCAGGAATCTAGAGGCGGATCTAGGATTTAAGTTTATGAGATCCTATAATAACCTCAAGTTAACATATAATAACAATTGATTTCATGATAAAATATTTACAGATATTTAGTGTATTATTAGATTTATGTAAACCCCTAGATCACACTTAAATCCGCCCGGTGCAGGACATGAAAATGCACATTTCTAGCATAATTTTGTATGTTTTGTTTTTCTCTTGTCTGTTTCCTTTTCTGTGTTTTTTTGGTCATGCTAAAGGATACCTCGTTAACTTATAATGTCCATTATGTTGCTAGCTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAGGTAGGTGCTTCACAATTTGACAATCCATGTGTTTTTTCTGGAACTTCAATTTCTAATCATTATAATACTGTAGATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTG</genome_strand>
        <mrna_strand>TTGATCCATTATTTGGTCAGTTCTTGATTTTTCTGTAAAAAAAAATGGCTCAATTGTTGTCACCTGTTTGTACAGATTCACTAAAATTACAGAACACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAG.........................................................................ATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E728171" ref_strand="+" ref_description="SGN-E728171 [LA16DG05]">
      <seq>gtcatttcttgatttttctgtaaaaaagggtggctcgattgttgtctcctgtttgtacagattcactaaaattacagaacaccgttcagtgtttctatacaagaagtaaagttccaattttgggtaataattttagctcaatgggtgtttttggaaagaagagaggaggattatggaggattaaagttgcttatcaagattctgctgctgcatctgaggaaattgctgatgatttttatgctgttttgggtttgcttcctgatgctacacctgctcaaataaagaaggcatactatagttgcatgaaagcttgccatccagatttgagtggtgatgatcccgagaccacaaatttttgcatgtttatcaatgaggtctatgagattcttagtgatccagtgcaaaggagagtttatgatgagatccatgggtacacagccacagcaattaaccctttcctgagcgattcatcgccgaaagatcatgtatttgttgacgagtttagctgcataggctgcaaaaattgtgccaatgtttgctcaaaagtgtttgggattgaggaagactttggaagagctagagtttactatcaatgtggacaccctgatttaattcaacaagctatagatagctgcccagtggattgcatacattggacttctgctgcacagctgtctttgcttgaggatgaaatgcgaagaatagaaagagtaaacgttgccttgatgctatcangaatgggcattggaaccctggatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="13034" stop="17913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13308" g_stop="13556" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13557" i_stop="14541" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14542" g_stop="14670" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="383" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14671" i_stop="14743" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14744" g_stop="14873" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="513" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14874" i_stop="15399" i_length="526">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15400" g_stop="15520" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="634" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15521" i_stop="16312" i_length="792">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16313" g_stop="16394" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="716" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16395" i_stop="17567" i_length="1173">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17568" g_stop="17613" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="762" r_length="46" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E728171" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13308" e_stop="13556"/>
          <exon e_start="14542" e_stop="14670"/>
          <exon e_start="14744" e_stop="14873"/>
          <exon e_start="15400" e_stop="15520"/>
          <exon e_start="16313" e_stop="16394"/>
          <exon e_start="17568" e_stop="17613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGT-CTTGATTTT-CTGTAAAAAA-A-TGGCTCAATGGTTGTCACCTGTT-GTACAGATTCACTAAAATTACGGACCACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTGGTAATTTACAACTTTTTTTTTTTTTTTTTTGCATTTTACTTGTCAAAGATCAAATTTTTATTGCTGCTTGGTGTATGGGGTAAGGTCATTTGAAGCTGTTTTTTTGCTTTTCATGTTGTAGTTTCTGTTTTTGTGATTACTTGCAATGAATTTCTCAGTAAAGAGGTAATTCATTTATGTAGTAATTTTTGTGTAAGTTGTATAATGTTCGGTAGATAGTTAGGAAGTAAGTTATTCACGTAAAAAATAATATGATATTTTTGTGTAAGTTGTATAATGTTATGTAGCTAGTTAGGAAGTAAGTTATTCACGTAAAAAATGATACGATATTTTTGTGTAAGTTGTATAATGTTCGGTAGCTAGTTTGGAAGTAAATTATTCATGTAAAAAATGATATGATATTTTTGTGTAAGTTGTATAATGTTCGGTAGCTTGTTAGTAAGTAAGTTATTCATGTGAAAATTGATATGATGCAAGGCTTGCAATTTAGAAACTCGCATAACTAATACATGTATAAGTTATGAGGGAATTGGTAATAATCTTATGCGGGGAGAAGATGGAATAATTAATACGTGCATAATTTAATCAGCTACCAAGCATCATTAATATTATTAAGGAAGATACACCATGAGTTTATAGTAACAAAAAAATATCAGTTGTTGTACTTTATCAGATTCAAGAAGCTCGATTTGCAGGAATCTAGAGGCGGATCTAGGATTTAAGTTTATGAGATCCTATAATAACCTCAAGTTAACATATAATAACAATTGATTTCATGATAAAATATTTACAGATATTTAGTGTATTATTAGATTTATGTAAACCCCTAGATCACACTTAAATCCGCCCGGTGCAGGACATGAAAATGCACATTTCTAGCATAATTTTGTATGTTTTGTTTTTCTCTTGTCTGTTTCCTTTTCTGTGTTTTTTTGGTCATGCTAAAGGATACCTCGTTAACTTATAATGTCCATTATGTTGCTAGCTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAGGTAGGTGCTTCACAATTTGACAATCCATGTGTTTTTTCTGGAACTTCAATTTCTAATCATTATAATACTGTAGATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTGTTGACGAGTTTAGCTGCATAGGTATTATAGTCTCACATTTTATTTGTTTGTTAATCTTTTTTTGTTCCACTTCATATCTTTTTCAAGTAGCTGTCCTTTTTGTACTTCCAGTTAAAATATGTCGATAGTTAATCATAATCTATTAGTTAACTTGTTGGTTAACTATATTTTGAAACACACATCTTCCATAGTTTCAGTTTCCTTTTTCCTGATGCTGAATTCTTAAAGGCCGTGTTTGTACTAATTAAAGAAGCTAGTTGTCATCTGATCACCTCCAACTCATTTGTGTTCACCAAATCATGCTTTTTTACAAGGCTAGAAAGCGAGAATGTTTCACGTCACAATGTGTATGAATGCTTAAAGTATATATAAAGAAGTTCATAGCTTTTGTATAGTCTAAGTGCAAAGCATTGTACTTCCAGTTCTAATTTTTTTCCGAAATTTGTTGAACTATGTTACGGATGTTTTGTCAATTCATTGAAATAAAAAAACATTGCAGCTCATTCTTGAAAAAATATGATTTAGAACACATCTCTCTCCTTCACAGGCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGATTGAGGAAGACTTTGGAAGAGCTAGAGTTTACGATCAATGTGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTGGTAGGTTCTTGCTTCATAGATGTAGTTGCTTGTTTCGAACTTATATATCCGTTCTGGTAATGACCTAATATAATTTTGCACTGAAAAGTTTCAAGTAAGAAAAGACATATAGTCATTATTTCCTTTCTGGTCTCTCAATGTGGTAAAACCACGATATATAGCAAATAAATTTGCAAAAATGATATTGCAGATTGGCAATTGAAGTGCAATGCCGGAGCTTATATATGTGATGCATTTCCTATGTTATCATGTTTCGTTCATTTGTTTTATCATGCTGCTACGAGATCTTTCAACTATCATATTCTTGCTCTATCAGATGCTTATGACACACACTAAGTGTGACTAAAAAACAATTTGAGACTTGAGTCACTAGAGTATAGTTCAACTGTGTATCTCCTTTAGACCGCAATGTTTATTCTAGCTATTTCCCCTCCCATAAGTAGTTATAAGCTGGTCAAATAAGCTTGAACTTTAGCAGAGTATGGAAGAATGTCATTTGTGATAGACTGATGTAAGTAAGTTTGCTTCAACTTCTGGGAATACCTGCATTATTAGTTTTAACAAAGATTCTTATGCTGTATTAAGGCTACATTTCCAAAAGGAGAGGAAAGGAAACTTGATTTATGTCTTATCATCTGATGACTTTGAGTTCATCTTGGAAAAAAATTACATACTCCCTCCGTTTCAATTTGGTTATTTGGTTTTAACTTGTACTTCTGCTATATCCATCTCACGGGATTTGTAGGATCAAATGATATAGCTAGTCAAATCACTAGTTCTTTCTCTTTGCAGCCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAACGTGAGCTACATTTCTCATTTATCTTGGTGATTTATGTCCATCACTTATGCAGTTTATATTCCTTTTTGCTGCTCTAAAATGCTCGACGACTTCACGAGTTGTTGCCAGATCAATTCTAAGTTTATGCTTTTTGCTGAATATTCCGGATGCCAATAACCTAATACATCCATGTAATACTATGGATATCAATAACCTAATAATCCATGTAGTACTTTGGATATCAATAACCTAAATTTATGCTTTTTGCTGACTGAACTTACCTATCACCTAACAGTTCTATAAACAGGAAATAAGAGATCATCTCACTCAACTCTATGTGACCAAAAAAATTGTAGTATTCAAAATACCTTGCATTCTCCTTTAAGTGTAATAAAATGCCTTTAACTAATCAAGGCAGGCCAGGGGTTAAAAAATTTTCGACATTATACTCCTTGGTAAAAGTCCTAATTGGTGGGCCTAATAATGGGATATGATCTTCCCTCTACGGGAAGGAATACCATTCCCCTACCTTGTGGAAAAAGCGTTGAATGTAAGGGGTTCCAAATAAAAATAAAAATCTAATGGCCTCCTTGGCGGGGGGGGGGAAGGGTTTTTGGGGGCCCCCCTAAAATTCCCAAATTTTGGCTCCCGGTGGAATTACAAATGTTTAAATGACCCTTTCCCACAAAAAAAAATTTTGGGGGGACCCAAATCTCAAAAACCCCCAAACTGGGGGGGGACCTTTTTAAAACGGGGGTTGAAAAAAAAGTGGGTTATTACGGGTTAAAAAGGGGCGCCGTAGCACTCCAAAAGAGGGGGGGGGGCCCCGGTTTTTTTTAAAGGGGTGCCCCCCCCCCCCTTTTTTGGTCCTCTGGCGCGGAGAATTAACGTCCGCGTTTTTTCACAAAATATTGTCGCCAAAAAACAAAAATTGTTTGGGACCCCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCCGTTTGAGTTAACAAGTTTCAAATGACTCTATCAACTAAAAAACATATGCTGCTAGCTAAACTTCACAAATTCCTTAATCTTGTTTGATCTTCTTTTTAGCTTGGTATTGAGTATAACGTGTGTATTTCATGTGTCAATAGGTTGCCTTGATGCTATCAGGAATGGGCAGTGGAGCCATGGATGTAT</genome_strand>
        <mrna_strand>GTCATTTCTTGATTTTTCTGTAAAAAAGGGTGGCTCGATTGTTGTCTCCTGTTTGTACAGATTCACTAAAATTACAGAACACCGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTATGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAG.........................................................................ATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTGTTGACGAGTTTAGCTGCATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGATTGAGGAAGACTTTGGAAGAGCTAGAGTTTACTATCAATGTGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCTTGATGCTATCANGAATGGGCATTGGAACCCTGGATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E541228" ref_strand="+" ref_description="SGN-E541228 [TUS-61-O14]">
      <seq>cagttcttgatttttctgtaaaaaaaaatggctcaattgttgtcacctgtttgtacagattcactaaaattacagaacacagttcagtgtttctatacaagaagtaaagttccaattttgggtaataattttagctcaatgggtgtttttggaaagaagagaggaggattagggaggattaaagttgcttatcaagattctgctgctgcatctgaggaaattgctgatgatttttatgctgttttgggtttgcttcctgatgctacacctgctcaaataaagaaggcatactatagttgcatgaaagcttgccatccagatttgagtggtgatgatcccgagaccacaaatttttgcatgtttatcaatgaggtctatgagattcttagtgatccagtgcaaaggagagtttatgatgagatccatgggtacacagccacagcaattaaccctttcctgagcgattcatcgccgaaagatcatgtatttgttgacgagtttagctgcataggctgcaaaaattgtgccaatgtttgctcaaaagtgtttgggattgaggaagactttggaagagctagagtttacgatcaatgtggacaccctgatttaattcaacaagctatagatagctgcccagtggattgcatacattggacttctgctgcacagctgtctttgcttgaggatgaaatgcgaagaatagaaagagtaaacgttgccttgatgctatcangaatgggcagtggagccatggatgtattcagaatggcgagcacgcggtgggaaaaacgacaatctaaagttctgggaaacagctaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="13019" stop="18341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13310" g_stop="13556" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13557" i_stop="14541" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14542" g_stop="14670" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="381" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14671" i_stop="14743" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14744" g_stop="14873" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="511" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14874" i_stop="15399" i_length="526">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15400" g_stop="15520" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="632" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15521" i_stop="16312" i_length="792">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16313" g_stop="16394" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="714" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16395" i_stop="17567" i_length="1173">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17568" g_stop="17621" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="768" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17622" i_stop="17999" i_length="378">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18000" g_stop="18038" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="807" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E541228" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13310" e_stop="13556"/>
          <exon e_start="14542" e_stop="14670"/>
          <exon e_start="14744" e_stop="14873"/>
          <exon e_start="15400" e_stop="15520"/>
          <exon e_start="16313" e_stop="16394"/>
          <exon e_start="17568" e_stop="17621"/>
          <exon e_start="18000" e_stop="18038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAG-TCTTGATTT-TCTGTA-AAAAA-ATGGCTCAATGGTTGTCACCTG-TTGTACAGATTCACTAAAATTACGGACCACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTGGTAATTTACAACTTTTTTTTTTTTTTTTTTGCATTTTACTTGTCAAAGATCAAATTTTTATTGCTGCTTGGTGTATGGGGTAAGGTCATTTGAAGCTGTTTTTTTGCTTTTCATGTTGTAGTTTCTGTTTTTGTGATTACTTGCAATGAATTTCTCAGTAAAGAGGTAATTCATTTATGTAGTAATTTTTGTGTAAGTTGTATAATGTTCGGTAGATAGTTAGGAAGTAAGTTATTCACGTAAAAAATAATATGATATTTTTGTGTAAGTTGTATAATGTTATGTAGCTAGTTAGGAAGTAAGTTATTCACGTAAAAAATGATACGATATTTTTGTGTAAGTTGTATAATGTTCGGTAGCTAGTTTGGAAGTAAATTATTCATGTAAAAAATGATATGATATTTTTGTGTAAGTTGTATAATGTTCGGTAGCTTGTTAGTAAGTAAGTTATTCATGTGAAAATTGATATGATGCAAGGCTTGCAATTTAGAAACTCGCATAACTAATACATGTATAAGTTATGAGGGAATTGGTAATAATCTTATGCGGGGAGAAGATGGAATAATTAATACGTGCATAATTTAATCAGCTACCAAGCATCATTAATATTATTAAGGAAGATACACCATGAGTTTATAGTAACAAAAAAATATCAGTTGTTGTACTTTATCAGATTCAAGAAGCTCGATTTGCAGGAATCTAGAGGCGGATCTAGGATTTAAGTTTATGAGATCCTATAATAACCTCAAGTTAACATATAATAACAATTGATTTCATGATAAAATATTTACAGATATTTAGTGTATTATTAGATTTATGTAAACCCCTAGATCACACTTAAATCCGCCCGGTGCAGGACATGAAAATGCACATTTCTAGCATAATTTTGTATGTTTTGTTTTTCTCTTGTCTGTTTCCTTTTCTGTGTTTTTTTGGTCATGCTAAAGGATACCTCGTTAACTTATAATGTCCATTATGTTGCTAGCTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAGGTAGGTGCTTCACAATTTGACAATCCATGTGTTTTTTCTGGAACTTCAATTTCTAATCATTATAATACTGTAGATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTGTTGACGAGTTTAGCTGCATAGGTATTATAGTCTCACATTTTATTTGTTTGTTAATCTTTTTTTGTTCCACTTCATATCTTTTTCAAGTAGCTGTCCTTTTTGTACTTCCAGTTAAAATATGTCGATAGTTAATCATAATCTATTAGTTAACTTGTTGGTTAACTATATTTTGAAACACACATCTTCCATAGTTTCAGTTTCCTTTTTCCTGATGCTGAATTCTTAAAGGCCGTGTTTGTACTAATTAAAGAAGCTAGTTGTCATCTGATCACCTCCAACTCATTTGTGTTCACCAAATCATGCTTTTTTACAAGGCTAGAAAGCGAGAATGTTTCACGTCACAATGTGTATGAATGCTTAAAGTATATATAAAGAAGTTCATAGCTTTTGTATAGTCTAAGTGCAAAGCATTGTACTTCCAGTTCTAATTTTTTTCCGAAATTTGTTGAACTATGTTACGGATGTTTTGTCAATTCATTGAAATAAAAAAACATTGCAGCTCATTCTTGAAAAAATATGATTTAGAACACATCTCTCTCCTTCACAGGCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGATTGAGGAAGACTTTGGAAGAGCTAGAGTTTACGATCAATGTGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTGGTAGGTTCTTGCTTCATAGATGTAGTTGCTTGTTTCGAACTTATATATCCGTTCTGGTAATGACCTAATATAATTTTGCACTGAAAAGTTTCAAGTAAGAAAAGACATATAGTCATTATTTCCTTTCTGGTCTCTCAATGTGGTAAAACCACGATATATAGCAAATAAATTTGCAAAAATGATATTGCAGATTGGCAATTGAAGTGCAATGCCGGAGCTTATATATGTGATGCATTTCCTATGTTATCATGTTTCGTTCATTTGTTTTATCATGCTGCTACGAGATCTTTCAACTATCATATTCTTGCTCTATCAGATGCTTATGACACACACTAAGTGTGACTAAAAAACAATTTGAGACTTGAGTCACTAGAGTATAGTTCAACTGTGTATCTCCTTTAGACCGCAATGTTTATTCTAGCTATTTCCCCTCCCATAAGTAGTTATAAGCTGGTCAAATAAGCTTGAACTTTAGCAGAGTATGGAAGAATGTCATTTGTGATAGACTGATGTAAGTAAGTTTGCTTCAACTTCTGGGAATACCTGCATTATTAGTTTTAACAAAGATTCTTATGCTGTATTAAGGCTACATTTCCAAAAGGAGAGGAAAGGAAACTTGATTTATGTCTTATCATCTGATGACTTTGAGTTCATCTTGGAAAAAAATTACATACTCCCTCCGTTTCAATTTGGTTATTTGGTTTTAACTTGTACTTCTGCTATATCCATCTCACGGGATTTGTAGGATCAAATGATATAGCTAGTCAAATCACTAGTTCTTTCTCTTTGCAGCCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAACGTGAGCTACATTTCTCATTTATCTTGGTGATTTATGTCCATCACTTATGCAGTTTATATTCCTTTTTGCTGCTCTAAAATGCTCGACGACTTCACGAGTTGTTGCCAGATCAATTCTAAGTTTATGCTTTTTGCTGAATATTCCGGATGCCAATAACCTAATACATCCATGTAATACTATGGATATCAATAACCTAATAATCCATGTAGTACTTTGGATATCAATAACCTAAATTTATGCTTTTTGCTGACTGAACTTACCTATCACCTAACAGTTCTATAAACAGGAAATAAGAGATCATCTCACTCAACTCTATGTGACCAAAAAAATTGTAGTATTCAAAATACCTTGCATTCTCCTTTAAGTGTAATAAAATGCCTTTAACTAATCAAGGCAGGCCAGGGGTTAAAAAATTTTCGACATTATACTCCTTGGTAAAAGTCCTAATTGGTGGGCCTAATAATGGGATATGATCTTCCCTCTACGGGAAGGAATACCATTCCCCTACCTTGTGGAAAAAGCGTTGAATGTAAGGGGTTCCAAATAAAAATAAAAATCTAATGGCCTCCTTGGCGGGGGGGGGGAAGGGTTTTTGGGGGCCCCCCTAAAATTCCCAAATTTTGGCTCCCGGTGGAATTACAAATGTTTAAATGACCCTTTCCCACAAAAAAAAATTTTGGGGGGACCCAAATCTCAAAAACCCCCAAACTGGGGGGGGACCTTTTTAAAACGGGGGTTGAAAAAAAAGTGGGTTATTACGGGTTAAAAAGGGGCGCCGTAGCACTCCAAAAGAGGGGGGGGGGCCCCGGTTTTTTTTAAAGGGGTGCCCCCCCCCCCCTTTTTTGGTCCTCTGGCGCGGAGAATTAACGTCCGCGTTTTTTCACAAAATATTGTCGCCAAAAAACAAAAATTGTTTGGGACCCCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCCGTTTGAGTTAACAAGTTTCAAATGACTCTATCAACTAAAAAACATATGCTGCTAGCTAAACTTCACAAATTCCTTAATCTTGTTTGATCTTCTTTTTAGCTTGGTATTGAGTATAACGTGTGTATTTCATGTGTCAATAGGTTGCCTTGATGCTATCAGGAATGGGCAGTGGAGCCATGGATGTATTCAGAATGGTAAACCCTAATTCCATTTTTTTTGTCTCTTTTGTCCGTATGAGTTTAATGTCTAGTTGATGTTATCATGATATTTTGTCCTTGAGATGTCCATAATTTTGTTGTAGCTTACAGTGTTCCACATGTTATCTACAACTATTCTGTTATTTTATTTTTTCGAGACCACCATTAGTTCTGTTTCTTCATTTGGACTTCTAAGTGAAATGATGGTTTGTGCACACTCTCGGAATGATTTGTACAGTTGCTGAATTAGCAAGTCATTATTTTTAAGAAATGTTCTGATAGTGAAGCTCTTTGCATATAAAGTTCAGCTAATGATTTTCTCTTCTCCAATTCCCTTCGCGCATTTGAATTATGTCAAAATACTTTATGATGCAGGCGAGCACGCGGTGGGAAAAACGACAATCTAAAGTTCTG</genome_strand>
        <mrna_strand>CAGTTCTTGATTTTTCTGTAAAAAAAAATGGCTCAATTGTTGTCACCTGTTTGTACAGATTCACTAAAATTACAGAACACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAG.........................................................................ATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTGTTGACGAGTTTAGCTGCATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGATTGAGGAAGACTTTGGAAGAGCTAGAGTTTACGATCAATGTGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCTTGATGCTATCANGAATGGGCAGTGGAGCCATGGATGTATTCAGAATG..........................................................................................................................................................................................................................................................................................................................................................................................GCGAGCACGCGGTGGGAAAAACGACAATCTAAAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E295420" ref_strand="+" ref_description="SGN-E295420 [cLET-23-P15]">
      <seq>agttcttgatttttctgtaaaaaaaaatggctcaattgttgtcacctgtttgtacagattcactaaaattacagaacacagttcagtgtttctatacaagaagtaaagttccaattttgggtaataattttagctcaatgggtgtttttggaaagaagagaggaggattagggaggattaaagttgcttatcaagattctgctgctgcatctgaggaaattgctgatgatttttatgctgttttgggtttgcttcctgatgctacacctgctcaaataaagaaggcatactatagttgcatgaaagcttgccatccagatttgagtggtgatgatcccgagaccacaaatttttgcatgtttatcaatgaggtctatgagattcttagtgatccagtgcaaaggagagtttatgatgagatccatgggtacacagccacagcaattaaccctttcctgagcgattcatcgccgaaagatcatgtatttgttgacgagtttagctgcataggctgcaaaaattgtgccaatgtttgctcaaaagtgtttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="13019" stop="15741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13311" g_stop="13556" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13557" i_stop="14541" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14542" g_stop="14670" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="380" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14671" i_stop="14743" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14744" g_stop="14873" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="510" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14874" i_stop="15399" i_length="526">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15400" g_stop="15441" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="552" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E295420" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13311" e_stop="13556"/>
          <exon e_start="14542" e_stop="14670"/>
          <exon e_start="14744" e_stop="14873"/>
          <exon e_start="15400" e_stop="15441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGT-CTTGATTTT-CTGTAA-AAAAA-TGGCTCAATGGTTGTCACCTG-TTGTACAGATTCACTAAAATTACGGACCACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTGGTAATTTACAACTTTTTTTTTTTTTTTTTTGCATTTTACTTGTCAAAGATCAAATTTTTATTGCTGCTTGGTGTATGGGGTAAGGTCATTTGAAGCTGTTTTTTTGCTTTTCATGTTGTAGTTTCTGTTTTTGTGATTACTTGCAATGAATTTCTCAGTAAAGAGGTAATTCATTTATGTAGTAATTTTTGTGTAAGTTGTATAATGTTCGGTAGATAGTTAGGAAGTAAGTTATTCACGTAAAAAATAATATGATATTTTTGTGTAAGTTGTATAATGTTATGTAGCTAGTTAGGAAGTAAGTTATTCACGTAAAAAATGATACGATATTTTTGTGTAAGTTGTATAATGTTCGGTAGCTAGTTTGGAAGTAAATTATTCATGTAAAAAATGATATGATATTTTTGTGTAAGTTGTATAATGTTCGGTAGCTTGTTAGTAAGTAAGTTATTCATGTGAAAATTGATATGATGCAAGGCTTGCAATTTAGAAACTCGCATAACTAATACATGTATAAGTTATGAGGGAATTGGTAATAATCTTATGCGGGGAGAAGATGGAATAATTAATACGTGCATAATTTAATCAGCTACCAAGCATCATTAATATTATTAAGGAAGATACACCATGAGTTTATAGTAACAAAAAAATATCAGTTGTTGTACTTTATCAGATTCAAGAAGCTCGATTTGCAGGAATCTAGAGGCGGATCTAGGATTTAAGTTTATGAGATCCTATAATAACCTCAAGTTAACATATAATAACAATTGATTTCATGATAAAATATTTACAGATATTTAGTGTATTATTAGATTTATGTAAACCCCTAGATCACACTTAAATCCGCCCGGTGCAGGACATGAAAATGCACATTTCTAGCATAATTTTGTATGTTTTGTTTTTCTCTTGTCTGTTTCCTTTTCTGTGTTTTTTTGGTCATGCTAAAGGATACCTCGTTAACTTATAATGTCCATTATGTTGCTAGCTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAGGTAGGTGCTTCACAATTTGACAATCCATGTGTTTTTTCTGGAACTTCAATTTCTAATCATTATAATACTGTAGATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTGTTGACGAGTTTAGCTGCATAGGTATTATAGTCTCACATTTTATTTGTTTGTTAATCTTTTTTTGTTCCACTTCATATCTTTTTCAAGTAGCTGTCCTTTTTGTACTTCCAGTTAAAATATGTCGATAGTTAATCATAATCTATTAGTTAACTTGTTGGTTAACTATATTTTGAAACACACATCTTCCATAGTTTCAGTTTCCTTTTTCCTGATGCTGAATTCTTAAAGGCCGTGTTTGTACTAATTAAAGAAGCTAGTTGTCATCTGATCACCTCCAACTCATTTGTGTTCACCAAATCATGCTTTTTTACAAGGCTAGAAAGCGAGAATGTTTCACGTCACAATGTGTATGAATGCTTAAAGTATATATAAAGAAGTTCATAGCTTTTGTATAGTCTAAGTGCAAAGCATTGTACTTCCAGTTCTAATTTTTTTCCGAAATTTGTTGAACTATGTTACGGATGTTTTGTCAATTCATTGAAATAAAAAAACATTGCAGCTCATTCTTGAAAAAATATGATTTAGAACACATCTCTCTCCTTCACAGGCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGA</genome_strand>
        <mrna_strand>AGTTCTTGATTTTTCTGTAAAAAAAAATGGCTCAATTGTTGTCACCTGTTTGTACAGATTCACTAAAATTACAGAACACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAG.........................................................................ATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTGTTGACGAGTTTAGCTGCATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E727543" ref_strand="+" ref_description="SGN-E727543 [LA15AA08]">
      <seq>cttgatttttctgtaaaaaaaatggctcaattgttgtcacctgtttgtacagattcactaaaattacagaacacagttcagtgtttctatacaagaagtaaagttccaattttgggtaataattttagctcaatgggtgtttttggaaagaagagaggaggattagggaggattaaagttgcttatcaagattctgctgctgcatctgaggaaattgctgatgatttttatgctgttttgggtttgcttcctgatgctacacctgctcaaataaagaaggcatactatagttgcatgaaagcttgccatccagatttgagtggtgatgatcccgagaccacaaatttttgcatgtttatcaatgaggtctatgagattcttagtgatccagtgcaaaggagagtttatgatgagatccatgggtacacagccacagcaattaaccctttcctgagcgattcatcgccgaaagatcatgtatttgttgacgagtttagctgcataggctgcaaaaattgtgccaatgtttgctcaaaagtgtttgggattgaggaagactttggaagagctagagtttacgatcaatgtggacaccctgatttaattcaacaagctatagatagctgcccagtggattgcatacattggacttctgctgcacagctgtctttgcttgaggatgaaatgcgaagaatagaaagagtaaacgttgccttgatgctatcaggaatgggcagtggagccatggatgtattcagaatggcgagcacgcggtgggaaaaacgacaatctaaagttctggaacaagctaaagtcagaatgatgaagaagaaaaattctgagaaaactgaatcatactgggataacctatggggcgatcgtaaagactaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="13014" stop="18892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13314" g_stop="13556" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13557" i_stop="14541" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14542" g_stop="14670" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="375" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14671" i_stop="14743" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14744" g_stop="14873" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="505" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14874" i_stop="15399" i_length="526">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15400" g_stop="15520" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="626" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15521" i_stop="16312" i_length="792">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16313" g_stop="16394" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="708" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16395" i_stop="17567" i_length="1173">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17568" g_stop="17621" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="762" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17622" i_stop="17999" i_length="378">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18000" g_stop="18038" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="801" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18039" i_stop="18499" i_length="461">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18500" g_stop="18592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="894" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E727543" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13314" e_stop="13556"/>
          <exon e_start="14542" e_stop="14670"/>
          <exon e_start="14744" e_stop="14873"/>
          <exon e_start="15400" e_stop="15520"/>
          <exon e_start="16313" e_stop="16394"/>
          <exon e_start="17568" e_stop="17621"/>
          <exon e_start="18000" e_stop="18038"/>
          <exon e_start="18500" e_stop="18592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGA-TTTTCTGTAAA-AAAATGGCTCAATGGTTGTCACCTG-TTGTACAGATTCACTAAAATTACGGACCACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTGGTAATTTACAACTTTTTTTTTTTTTTTTTTGCATTTTACTTGTCAAAGATCAAATTTTTATTGCTGCTTGGTGTATGGGGTAAGGTCATTTGAAGCTGTTTTTTTGCTTTTCATGTTGTAGTTTCTGTTTTTGTGATTACTTGCAATGAATTTCTCAGTAAAGAGGTAATTCATTTATGTAGTAATTTTTGTGTAAGTTGTATAATGTTCGGTAGATAGTTAGGAAGTAAGTTATTCACGTAAAAAATAATATGATATTTTTGTGTAAGTTGTATAATGTTATGTAGCTAGTTAGGAAGTAAGTTATTCACGTAAAAAATGATACGATATTTTTGTGTAAGTTGTATAATGTTCGGTAGCTAGTTTGGAAGTAAATTATTCATGTAAAAAATGATATGATATTTTTGTGTAAGTTGTATAATGTTCGGTAGCTTGTTAGTAAGTAAGTTATTCATGTGAAAATTGATATGATGCAAGGCTTGCAATTTAGAAACTCGCATAACTAATACATGTATAAGTTATGAGGGAATTGGTAATAATCTTATGCGGGGAGAAGATGGAATAATTAATACGTGCATAATTTAATCAGCTACCAAGCATCATTAATATTATTAAGGAAGATACACCATGAGTTTATAGTAACAAAAAAATATCAGTTGTTGTACTTTATCAGATTCAAGAAGCTCGATTTGCAGGAATCTAGAGGCGGATCTAGGATTTAAGTTTATGAGATCCTATAATAACCTCAAGTTAACATATAATAACAATTGATTTCATGATAAAATATTTACAGATATTTAGTGTATTATTAGATTTATGTAAACCCCTAGATCACACTTAAATCCGCCCGGTGCAGGACATGAAAATGCACATTTCTAGCATAATTTTGTATGTTTTGTTTTTCTCTTGTCTGTTTCCTTTTCTGTGTTTTTTTGGTCATGCTAAAGGATACCTCGTTAACTTATAATGTCCATTATGTTGCTAGCTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAGGTAGGTGCTTCACAATTTGACAATCCATGTGTTTTTTCTGGAACTTCAATTTCTAATCATTATAATACTGTAGATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTGTTGACGAGTTTAGCTGCATAGGTATTATAGTCTCACATTTTATTTGTTTGTTAATCTTTTTTTGTTCCACTTCATATCTTTTTCAAGTAGCTGTCCTTTTTGTACTTCCAGTTAAAATATGTCGATAGTTAATCATAATCTATTAGTTAACTTGTTGGTTAACTATATTTTGAAACACACATCTTCCATAGTTTCAGTTTCCTTTTTCCTGATGCTGAATTCTTAAAGGCCGTGTTTGTACTAATTAAAGAAGCTAGTTGTCATCTGATCACCTCCAACTCATTTGTGTTCACCAAATCATGCTTTTTTACAAGGCTAGAAAGCGAGAATGTTTCACGTCACAATGTGTATGAATGCTTAAAGTATATATAAAGAAGTTCATAGCTTTTGTATAGTCTAAGTGCAAAGCATTGTACTTCCAGTTCTAATTTTTTTCCGAAATTTGTTGAACTATGTTACGGATGTTTTGTCAATTCATTGAAATAAAAAAACATTGCAGCTCATTCTTGAAAAAATATGATTTAGAACACATCTCTCTCCTTCACAGGCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGATTGAGGAAGACTTTGGAAGAGCTAGAGTTTACGATCAATGTGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTGGTAGGTTCTTGCTTCATAGATGTAGTTGCTTGTTTCGAACTTATATATCCGTTCTGGTAATGACCTAATATAATTTTGCACTGAAAAGTTTCAAGTAAGAAAAGACATATAGTCATTATTTCCTTTCTGGTCTCTCAATGTGGTAAAACCACGATATATAGCAAATAAATTTGCAAAAATGATATTGCAGATTGGCAATTGAAGTGCAATGCCGGAGCTTATATATGTGATGCATTTCCTATGTTATCATGTTTCGTTCATTTGTTTTATCATGCTGCTACGAGATCTTTCAACTATCATATTCTTGCTCTATCAGATGCTTATGACACACACTAAGTGTGACTAAAAAACAATTTGAGACTTGAGTCACTAGAGTATAGTTCAACTGTGTATCTCCTTTAGACCGCAATGTTTATTCTAGCTATTTCCCCTCCCATAAGTAGTTATAAGCTGGTCAAATAAGCTTGAACTTTAGCAGAGTATGGAAGAATGTCATTTGTGATAGACTGATGTAAGTAAGTTTGCTTCAACTTCTGGGAATACCTGCATTATTAGTTTTAACAAAGATTCTTATGCTGTATTAAGGCTACATTTCCAAAAGGAGAGGAAAGGAAACTTGATTTATGTCTTATCATCTGATGACTTTGAGTTCATCTTGGAAAAAAATTACATACTCCCTCCGTTTCAATTTGGTTATTTGGTTTTAACTTGTACTTCTGCTATATCCATCTCACGGGATTTGTAGGATCAAATGATATAGCTAGTCAAATCACTAGTTCTTTCTCTTTGCAGCCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAACGTGAGCTACATTTCTCATTTATCTTGGTGATTTATGTCCATCACTTATGCAGTTTATATTCCTTTTTGCTGCTCTAAAATGCTCGACGACTTCACGAGTTGTTGCCAGATCAATTCTAAGTTTATGCTTTTTGCTGAATATTCCGGATGCCAATAACCTAATACATCCATGTAATACTATGGATATCAATAACCTAATAATCCATGTAGTACTTTGGATATCAATAACCTAAATTTATGCTTTTTGCTGACTGAACTTACCTATCACCTAACAGTTCTATAAACAGGAAATAAGAGATCATCTCACTCAACTCTATGTGACCAAAAAAATTGTAGTATTCAAAATACCTTGCATTCTCCTTTAAGTGTAATAAAATGCCTTTAACTAATCAAGGCAGGCCAGGGGTTAAAAAATTTTCGACATTATACTCCTTGGTAAAAGTCCTAATTGGTGGGCCTAATAATGGGATATGATCTTCCCTCTACGGGAAGGAATACCATTCCCCTACCTTGTGGAAAAAGCGTTGAATGTAAGGGGTTCCAAATAAAAATAAAAATCTAATGGCCTCCTTGGCGGGGGGGGGGAAGGGTTTTTGGGGGCCCCCCTAAAATTCCCAAATTTTGGCTCCCGGTGGAATTACAAATGTTTAAATGACCCTTTCCCACAAAAAAAAATTTTGGGGGGACCCAAATCTCAAAAACCCCCAAACTGGGGGGGGACCTTTTTAAAACGGGGGTTGAAAAAAAAGTGGGTTATTACGGGTTAAAAAGGGGCGCCGTAGCACTCCAAAAGAGGGGGGGGGGCCCCGGTTTTTTTTAAAGGGGTGCCCCCCCCCCCCTTTTTTGGTCCTCTGGCGCGGAGAATTAACGTCCGCGTTTTTTCACAAAATATTGTCGCCAAAAAACAAAAATTGTTTGGGACCCCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCCGTTTGAGTTAACAAGTTTCAAATGACTCTATCAACTAAAAAACATATGCTGCTAGCTAAACTTCACAAATTCCTTAATCTTGTTTGATCTTCTTTTTAGCTTGGTATTGAGTATAACGTGTGTATTTCATGTGTCAATAGGTTGCCTTGATGCTATCAGGAATGGGCAGTGGAGCCATGGATGTATTCAGAATGGTAAACCCTAATTCCATTTTTTTTGTCTCTTTTGTCCGTATGAGTTTAATGTCTAGTTGATGTTATCATGATATTTTGTCCTTGAGATGTCCATAATTTTGTTGTAGCTTACAGTGTTCCACATGTTATCTACAACTATTCTGTTATTTTATTTTTTCGAGACCACCATTAGTTCTGTTTCTTCATTTGGACTTCTAAGTGAAATGATGGTTTGTGCACACTCTCGGAATGATTTGTACAGTTGCTGAATTAGCAAGTCATTATTTTTAAGAAATGTTCTGATAGTGAAGCTCTTTGCATATAAAGTTCAGCTAATGATTTTCTCTTCTCCAATTCCCTTCGCGCATTTGAATTATGTCAAAATACTTTATGATGCAGGCGAGCACGCGGTGGGAAAAACGACAATCTAAAGTTCTGGTATGAACTCTTGGCTCAAGTGTTTAAATATACGTCTACCAACCTTATTATATTCATCGTTCAGTTAGCTTGTTTTGCTTATGTGCAAATTGAAGCGCTTGTTGACAATATTTAGGACAGTGGTATTTTATATATGCCATAGCGCACATGGTACGTGTTTGCAAATGGTTTACTTTTATGCATGTTCCAGATTTCAATTGGCTTTTCATGCCTTAAGAAGTTTTAAGTTCTAGTAAATTTACGCATGGTGCTGCAGTTTCCTCTATTTGTTGTTCATTTTTGTCTCCTTTTGAGCAGAGAAATTTCTATGACATTAGATATTGCTTCGGATATTGTTAGTTAACGGTAGAGGGATACATAAAGTTGTTTCTATACGGGATATTTTTCTCGATTTTCCTCCTATTGATAGTTGTAGCATTGTGATTAGATAGAAAACTTGTATGACATGTAAGTTACTGCAGGAACAAGCTAAAGTCAGAATGATGAAGAAGAAAAATTCTGAGAAAACTGAATCATACTGGGATAACCTATGGGGCGATCGTAAAGACTACACA</genome_strand>
        <mrna_strand>CTTGATTTTTCTGTAAAAAAAATGGCTCAATTGTTGTCACCTGTTTGTACAGATTCACTAAAATTACAGAACACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAG.........................................................................ATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTGTTGACGAGTTTAGCTGCATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGATTGAGGAAGACTTTGGAAGAGCTAGAGTTTACGATCAATGTGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCTTGATGCTATCAGGAATGGGCAGTGGAGCCATGGATGTATTCAGAATG..........................................................................................................................................................................................................................................................................................................................................................................................GCGAGCACGCGGTGGGAAAAACGACAATCTAAAGTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAGCTAAAGTCAGAATGATGAAGAAGAAAAATTCTGAGAAAACTGAATCATACTGGGATAACCTATGGGGCGATCGTAAAGACTACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E727718" ref_strand="+" ref_description="SGN-E727718 [LA15CB08]">
      <seq>cgacggtcagttcttgatttttctgtaaaaaaaaatggctcaattgttgtcacctgtttgtacagattcactaaaattacagaacacagttcagtgtttctatacaagaagtaaagttccaattttgggtaataattttagctcaatgggtgtttttggaaagaagagaggaggattagggaggattaaagttgcttatcaagattctgctgctgcatctgaggaaattgctgatgatttttatgctgttttgggtttgcttcctgatgctacacctgctcaaataaagaaggcatactatagttgcatgaaagcttgccatccagatttgagtggtgatgatcccgagaccacaaatttttgcatgtttatcaatgaggtctatgagattcttagtgatccagtgcaaaggagagtttatgatgagatccatgggtacacagccacagcaattaaccctttcctgagcgattcatcgccgaaagatcatgtatttgttgacgagtttagctgcataggctgcaaaaattgtgccaatgtttgctcaaaagtgtttgggattgaggaagactttggaagagctagagtttacgatcaatgtggacaccctgatttaattcaacaagctatagatagctgcccagtggattgcatacattggacttctgctgcacagctgtctttgcttgaggatgaaatgcgaagaatagaaagagtaaacgttgccttgatgctatcaggaatgggcagtggagccatggatgtattcaaaatggcgagcacgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="13019" stop="17929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13327" g_stop="13556" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="259" r_length="231" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13557" i_stop="14541" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14542" g_stop="14670" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="388" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14671" i_stop="14743" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14744" g_stop="14873" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="518" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14874" i_stop="15399" i_length="526">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15400" g_stop="15520" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="639" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15521" i_stop="16312" i_length="792">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16313" g_stop="16394" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="721" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16395" i_stop="17567" i_length="1173">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17568" g_stop="17621" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="775" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E727718" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13327" e_stop="13556"/>
          <exon e_start="14542" e_stop="14670"/>
          <exon e_start="14744" e_stop="14873"/>
          <exon e_start="15400" e_stop="15520"/>
          <exon e_start="16313" e_stop="16394"/>
          <exon e_start="17568" e_stop="17621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATGGCTCAATGGTTGTCACCTGT-TGTACAGATTCACTAAAATTACGGACCACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTGGTAATTTACAACTTTTTTTTTTTTTTTTTTGCATTTTACTTGTCAAAGATCAAATTTTTATTGCTGCTTGGTGTATGGGGTAAGGTCATTTGAAGCTGTTTTTTTGCTTTTCATGTTGTAGTTTCTGTTTTTGTGATTACTTGCAATGAATTTCTCAGTAAAGAGGTAATTCATTTATGTAGTAATTTTTGTGTAAGTTGTATAATGTTCGGTAGATAGTTAGGAAGTAAGTTATTCACGTAAAAAATAATATGATATTTTTGTGTAAGTTGTATAATGTTATGTAGCTAGTTAGGAAGTAAGTTATTCACGTAAAAAATGATACGATATTTTTGTGTAAGTTGTATAATGTTCGGTAGCTAGTTTGGAAGTAAATTATTCATGTAAAAAATGATATGATATTTTTGTGTAAGTTGTATAATGTTCGGTAGCTTGTTAGTAAGTAAGTTATTCATGTGAAAATTGATATGATGCAAGGCTTGCAATTTAGAAACTCGCATAACTAATACATGTATAAGTTATGAGGGAATTGGTAATAATCTTATGCGGGGAGAAGATGGAATAATTAATACGTGCATAATTTAATCAGCTACCAAGCATCATTAATATTATTAAGGAAGATACACCATGAGTTTATAGTAACAAAAAAATATCAGTTGTTGTACTTTATCAGATTCAAGAAGCTCGATTTGCAGGAATCTAGAGGCGGATCTAGGATTTAAGTTTATGAGATCCTATAATAACCTCAAGTTAACATATAATAACAATTGATTTCATGATAAAATATTTACAGATATTTAGTGTATTATTAGATTTATGTAAACCCCTAGATCACACTTAAATCCGCCCGGTGCAGGACATGAAAATGCACATTTCTAGCATAATTTTGTATGTTTTGTTTTTCTCTTGTCTGTTTCCTTTTCTGTGTTTTTTTGGTCATGCTAAAGGATACCTCGTTAACTTATAATGTCCATTATGTTGCTAGCTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAGGTAGGTGCTTCACAATTTGACAATCCATGTGTTTTTTCTGGAACTTCAATTTCTAATCATTATAATACTGTAGATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTGTTGACGAGTTTAGCTGCATAGGTATTATAGTCTCACATTTTATTTGTTTGTTAATCTTTTTTTGTTCCACTTCATATCTTTTTCAAGTAGCTGTCCTTTTTGTACTTCCAGTTAAAATATGTCGATAGTTAATCATAATCTATTAGTTAACTTGTTGGTTAACTATATTTTGAAACACACATCTTCCATAGTTTCAGTTTCCTTTTTCCTGATGCTGAATTCTTAAAGGCCGTGTTTGTACTAATTAAAGAAGCTAGTTGTCATCTGATCACCTCCAACTCATTTGTGTTCACCAAATCATGCTTTTTTACAAGGCTAGAAAGCGAGAATGTTTCACGTCACAATGTGTATGAATGCTTAAAGTATATATAAAGAAGTTCATAGCTTTTGTATAGTCTAAGTGCAAAGCATTGTACTTCCAGTTCTAATTTTTTTCCGAAATTTGTTGAACTATGTTACGGATGTTTTGTCAATTCATTGAAATAAAAAAACATTGCAGCTCATTCTTGAAAAAATATGATTTAGAACACATCTCTCTCCTTCACAGGCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGATTGAGGAAGACTTTGGAAGAGCTAGAGTTTACGATCAATGTGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTGGTAGGTTCTTGCTTCATAGATGTAGTTGCTTGTTTCGAACTTATATATCCGTTCTGGTAATGACCTAATATAATTTTGCACTGAAAAGTTTCAAGTAAGAAAAGACATATAGTCATTATTTCCTTTCTGGTCTCTCAATGTGGTAAAACCACGATATATAGCAAATAAATTTGCAAAAATGATATTGCAGATTGGCAATTGAAGTGCAATGCCGGAGCTTATATATGTGATGCATTTCCTATGTTATCATGTTTCGTTCATTTGTTTTATCATGCTGCTACGAGATCTTTCAACTATCATATTCTTGCTCTATCAGATGCTTATGACACACACTAAGTGTGACTAAAAAACAATTTGAGACTTGAGTCACTAGAGTATAGTTCAACTGTGTATCTCCTTTAGACCGCAATGTTTATTCTAGCTATTTCCCCTCCCATAAGTAGTTATAAGCTGGTCAAATAAGCTTGAACTTTAGCAGAGTATGGAAGAATGTCATTTGTGATAGACTGATGTAAGTAAGTTTGCTTCAACTTCTGGGAATACCTGCATTATTAGTTTTAACAAAGATTCTTATGCTGTATTAAGGCTACATTTCCAAAAGGAGAGGAAAGGAAACTTGATTTATGTCTTATCATCTGATGACTTTGAGTTCATCTTGGAAAAAAATTACATACTCCCTCCGTTTCAATTTGGTTATTTGGTTTTAACTTGTACTTCTGCTATATCCATCTCACGGGATTTGTAGGATCAAATGATATAGCTAGTCAAATCACTAGTTCTTTCTCTTTGCAGCCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAACGTGAGCTACATTTCTCATTTATCTTGGTGATTTATGTCCATCACTTATGCAGTTTATATTCCTTTTTGCTGCTCTAAAATGCTCGACGACTTCACGAGTTGTTGCCAGATCAATTCTAAGTTTATGCTTTTTGCTGAATATTCCGGATGCCAATAACCTAATACATCCATGTAATACTATGGATATCAATAACCTAATAATCCATGTAGTACTTTGGATATCAATAACCTAAATTTATGCTTTTTGCTGACTGAACTTACCTATCACCTAACAGTTCTATAAACAGGAAATAAGAGATCATCTCACTCAACTCTATGTGACCAAAAAAATTGTAGTATTCAAAATACCTTGCATTCTCCTTTAAGTGTAATAAAATGCCTTTAACTAATCAAGGCAGGCCAGGGGTTAAAAAATTTTCGACATTATACTCCTTGGTAAAAGTCCTAATTGGTGGGCCTAATAATGGGATATGATCTTCCCTCTACGGGAAGGAATACCATTCCCCTACCTTGTGGAAAAAGCGTTGAATGTAAGGGGTTCCAAATAAAAATAAAAATCTAATGGCCTCCTTGGCGGGGGGGGGGAAGGGTTTTTGGGGGCCCCCCTAAAATTCCCAAATTTTGGCTCCCGGTGGAATTACAAATGTTTAAATGACCCTTTCCCACAAAAAAAAATTTTGGGGGGACCCAAATCTCAAAAACCCCCAAACTGGGGGGGGACCTTTTTAAAACGGGGGTTGAAAAAAAAGTGGGTTATTACGGGTTAAAAAGGGGCGCCGTAGCACTCCAAAAGAGGGGGGGGGGCCCCGGTTTTTTTTAAAGGGGTGCCCCCCCCCCCCTTTTTTGGTCCTCTGGCGCGGAGAATTAACGTCCGCGTTTTTTCACAAAATATTGTCGCCAAAAAACAAAAATTGTTTGGGACCCCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCCGTTTGAGTTAACAAGTTTCAAATGACTCTATCAACTAAAAAACATATGCTGCTAGCTAAACTTCACAAATTCCTTAATCTTGTTTGATCTTCTTTTTAGCTTGGTATTGAGTATAACGTGTGTATTTCATGTGTCAATAGGTTGCCTTGATGCTATCAGGAATGGGCAGTGGAGCCATGGATGTATTCAGAATG</genome_strand>
        <mrna_strand>AAAAAAATGGCTCAATTGTTGTCACCTGTTTGTACAGATTCACTAAAATTACAGAACACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAG.........................................................................ATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTGTTGACGAGTTTAGCTGCATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGATTGAGGAAGACTTTGGAAGAGCTAGAGTTTACGATCAATGTGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCTTGATGCTATCAGGAATGGGCAGTGGAGCCATGGATGTATTCAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E289352" ref_strand="+" ref_description="SGN-E289352 [cLES-18-L8]">
      <seq>gtatttgttgacgagtttagctgcataggctgcaaaaattgtgccaatgtttgctcaaaagtgtttgggattgaggaagactttggaagagctagagtttacgatcaatgtggacaccctgatttaattcaacaagctatagatagctgcccagtggattgcatacattggacttctgctgcacagctgtctttgcttgaggatgaaatgcgaagaatagaaagagtaaacgttgccttgatgctatcaggaatgggcagtggagccatggatgtattcagaatggcgagcacgcggtgggaaaaacgacaatctaaagttctggaacaagctaaagtcagaatgatgaagaagaaaaattctgagaaaactgaatcatactgggataacctatggggcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="14546" stop="18878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14846" g_stop="14873" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14874" i_stop="15399" i_length="526">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15400" g_stop="15520" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="149" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15521" i_stop="16312" i_length="792">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16313" g_stop="16394" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="231" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16395" i_stop="17567" i_length="1173">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17568" g_stop="17621" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="285" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17622" i_stop="17999" i_length="378">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18000" g_stop="18038" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="324" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18039" i_stop="18499" i_length="461">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18500" g_stop="18578" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="403" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E289352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14846" e_stop="14873"/>
          <exon e_start="15400" e_stop="15520"/>
          <exon e_start="16313" e_stop="16394"/>
          <exon e_start="17568" e_stop="17621"/>
          <exon e_start="18000" e_stop="18038"/>
          <exon e_start="18500" e_stop="18578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTGTTGACGAGTTTAGCTGCATAGGTATTATAGTCTCACATTTTATTTGTTTGTTAATCTTTTTTTGTTCCACTTCATATCTTTTTCAAGTAGCTGTCCTTTTTGTACTTCCAGTTAAAATATGTCGATAGTTAATCATAATCTATTAGTTAACTTGTTGGTTAACTATATTTTGAAACACACATCTTCCATAGTTTCAGTTTCCTTTTTCCTGATGCTGAATTCTTAAAGGCCGTGTTTGTACTAATTAAAGAAGCTAGTTGTCATCTGATCACCTCCAACTCATTTGTGTTCACCAAATCATGCTTTTTTACAAGGCTAGAAAGCGAGAATGTTTCACGTCACAATGTGTATGAATGCTTAAAGTATATATAAAGAAGTTCATAGCTTTTGTATAGTCTAAGTGCAAAGCATTGTACTTCCAGTTCTAATTTTTTTCCGAAATTTGTTGAACTATGTTACGGATGTTTTGTCAATTCATTGAAATAAAAAAACATTGCAGCTCATTCTTGAAAAAATATGATTTAGAACACATCTCTCTCCTTCACAGGCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGATTGAGGAAGACTTTGGAAGAGCTAGAGTTTACGATCAATGTGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTGGTAGGTTCTTGCTTCATAGATGTAGTTGCTTGTTTCGAACTTATATATCCGTTCTGGTAATGACCTAATATAATTTTGCACTGAAAAGTTTCAAGTAAGAAAAGACATATAGTCATTATTTCCTTTCTGGTCTCTCAATGTGGTAAAACCACGATATATAGCAAATAAATTTGCAAAAATGATATTGCAGATTGGCAATTGAAGTGCAATGCCGGAGCTTATATATGTGATGCATTTCCTATGTTATCATGTTTCGTTCATTTGTTTTATCATGCTGCTACGAGATCTTTCAACTATCATATTCTTGCTCTATCAGATGCTTATGACACACACTAAGTGTGACTAAAAAACAATTTGAGACTTGAGTCACTAGAGTATAGTTCAACTGTGTATCTCCTTTAGACCGCAATGTTTATTCTAGCTATTTCCCCTCCCATAAGTAGTTATAAGCTGGTCAAATAAGCTTGAACTTTAGCAGAGTATGGAAGAATGTCATTTGTGATAGACTGATGTAAGTAAGTTTGCTTCAACTTCTGGGAATACCTGCATTATTAGTTTTAACAAAGATTCTTATGCTGTATTAAGGCTACATTTCCAAAAGGAGAGGAAAGGAAACTTGATTTATGTCTTATCATCTGATGACTTTGAGTTCATCTTGGAAAAAAATTACATACTCCCTCCGTTTCAATTTGGTTATTTGGTTTTAACTTGTACTTCTGCTATATCCATCTCACGGGATTTGTAGGATCAAATGATATAGCTAGTCAAATCACTAGTTCTTTCTCTTTGCAGCCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAACGTGAGCTACATTTCTCATTTATCTTGGTGATTTATGTCCATCACTTATGCAGTTTATATTCCTTTTTGCTGCTCTAAAATGCTCGACGACTTCACGAGTTGTTGCCAGATCAATTCTAAGTTTATGCTTTTTGCTGAATATTCCGGATGCCAATAACCTAATACATCCATGTAATACTATGGATATCAATAACCTAATAATCCATGTAGTACTTTGGATATCAATAACCTAAATTTATGCTTTTTGCTGACTGAACTTACCTATCACCTAACAGTTCTATAAACAGGAAATAAGAGATCATCTCACTCAACTCTATGTGACCAAAAAAATTGTAGTATTCAAAATACCTTGCATTCTCCTTTAAGTGTAATAAAATGCCTTTAACTAATCAAGGCAGGCCAGGGGTTAAAAAATTTTCGACATTATACTCCTTGGTAAAAGTCCTAATTGGTGGGCCTAATAATGGGATATGATCTTCCCTCTACGGGAAGGAATACCATTCCCCTACCTTGTGGAAAAAGCGTTGAATGTAAGGGGTTCCAAATAAAAATAAAAATCTAATGGCCTCCTTGGCGGGGGGGGGGAAGGGTTTTTGGGGGCCCCCCTAAAATTCCCAAATTTTGGCTCCCGGTGGAATTACAAATGTTTAAATGACCCTTTCCCACAAAAAAAAATTTTGGGGGGACCCAAATCTCAAAAACCCCCAAACTGGGGGGGGACCTTTTTAAAACGGGGGTTGAAAAAAAAGTGGGTTATTACGGGTTAAAAAGGGGCGCCGTAGCACTCCAAAAGAGGGGGGGGGGCCCCGGTTTTTTTTAAAGGGGTGCCCCCCCCCCCCTTTTTTGGTCCTCTGGCGCGGAGAATTAACGTCCGCGTTTTTTCACAAAATATTGTCGCCAAAAAACAAAAATTGTTTGGGACCCCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCCGTTTGAGTTAACAAGTTTCAAATGACTCTATCAACTAAAAAACATATGCTGCTAGCTAAACTTCACAAATTCCTTAATCTTGTTTGATCTTCTTTTTAGCTTGGTATTGAGTATAACGTGTGTATTTCATGTGTCAATAGGTTGCCTTGATGCTATCAGGAATGGGCAGTGGAGCCATGGATGTATTCAGAATGGTAAACCCTAATTCCATTTTTTTTGTCTCTTTTGTCCGTATGAGTTTAATGTCTAGTTGATGTTATCATGATATTTTGTCCTTGAGATGTCCATAATTTTGTTGTAGCTTACAGTGTTCCACATGTTATCTACAACTATTCTGTTATTTTATTTTTTCGAGACCACCATTAGTTCTGTTTCTTCATTTGGACTTCTAAGTGAAATGATGGTTTGTGCACACTCTCGGAATGATTTGTACAGTTGCTGAATTAGCAAGTCATTATTTTTAAGAAATGTTCTGATAGTGAAGCTCTTTGCATATAAAGTTCAGCTAATGATTTTCTCTTCTCCAATTCCCTTCGCGCATTTGAATTATGTCAAAATACTTTATGATGCAGGCGAGCACGCGGTGGGAAAAACGACAATCTAAAGTTCTGGTATGAACTCTTGGCTCAAGTGTTTAAATATACGTCTACCAACCTTATTATATTCATCGTTCAGTTAGCTTGTTTTGCTTATGTGCAAATTGAAGCGCTTGTTGACAATATTTAGGACAGTGGTATTTTATATATGCCATAGCGCACATGGTACGTGTTTGCAAATGGTTTACTTTTATGCATGTTCCAGATTTCAATTGGCTTTTCATGCCTTAAGAAGTTTTAAGTTCTAGTAAATTTACGCATGGTGCTGCAGTTTCCTCTATTTGTTGTTCATTTTTGTCTCCTTTTGAGCAGAGAAATTTCTATGACATTAGATATTGCTTCGGATATTGTTAGTTAACGGTAGAGGGATACATAAAGTTGTTTCTATACGGGATATTTTTCTCGATTTTCCTCCTATTGATAGTTGTAGCATTGTGATTAGATAGAAAACTTGTATGACATGTAAGTTACTGCAGGAACAAGCTAAAGTCAGAATGATGAAGAAGAAAAATTCTGAGAAAACTGAATCATACTGGGATAACCTATGGGGCGATC</genome_strand>
        <mrna_strand>GTATTTGTTGACGAGTTTAGCTGCATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGATTGAGGAAGACTTTGGAAGAGCTAGAGTTTACGATCAATGTGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCTTGATGCTATCAGGAATGGGCAGTGGAGCCATGGATGTATTCAGAATG..........................................................................................................................................................................................................................................................................................................................................................................................GCGAGCACGCGGTGGGAAAAACGACAATCTAAAGTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAGCTAAAGTCAGAATGATGAAGAAGAAAAATTCTGAGAAAACTGAATCATACTGGGATAACCTATGGGGCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E346368" ref_strand="+" ref_description="SGN-E346368 [cTOF-23-K17]">
      <seq>tggacaccctgatttaattcaacaagctatagatagctgcccagtggattgcatacattggacttctgctgcacagctgtctttgcttgaggatgaaatgcgaagaatagaaagagtaaacgttgccttgatgctatcaggaatgggcagtggagccatggatgtattcagaatggcgagcacgcggtgggaaaaacgacaatctaaagttctggaacaagctaaagtcagaatgatgaagaagaaaaattctgagaaaactgaatcatactgggataacctatggggcgatcgtaaagactacacaaagacagaggaggaagtggaagatagatcaaaacgagctgcagcagctgctcgcaaatggagagagtactcaaggagaggtgctgacaaacctcctacctttaaacttcccgaggccatctctaatgacaattgacatatacttcctaaccgactttgcagtgcacggtacatgcatctcacctttgtaaaatatggtacatttagatatagtatattcatgatagtcatggttcctccccatatcgatgtaattatatagctaaaattgacctcgggtacatctatctgtatgtaagatcattcataattcaataaaagttgtatggagaaaacaattattcaacctgtgtatttcgtcgtttgatattcatgattngatggttctattctgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="15182" stop="19357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15482" g_stop="15520" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15521" i_stop="16312" i_length="792">
            <donor d_prob="0.954" d_score="0.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16313" g_stop="16394" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="121" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16395" i_stop="17567" i_length="1173">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17568" g_stop="17621" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="175" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17622" i_stop="17999" i_length="378">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18000" g_stop="18038" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="214" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18039" i_stop="18499" i_length="461">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18500" g_stop="18599" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="314" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18600" i_stop="18673" i_length="74">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18674" g_stop="19051" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="694" r_length="380" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="701" polyA_stop="713"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E346368" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15482" e_stop="15520"/>
          <exon e_start="16313" e_stop="16394"/>
          <exon e_start="17568" e_stop="17621"/>
          <exon e_start="18000" e_stop="18038"/>
          <exon e_start="18500" e_stop="18599"/>
          <exon e_start="18674" e_stop="19051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTGGTAGGTTCTTGCTTCATAGATGTAGTTGCTTGTTTCGAACTTATATATCCGTTCTGGTAATGACCTAATATAATTTTGCACTGAAAAGTTTCAAGTAAGAAAAGACATATAGTCATTATTTCCTTTCTGGTCTCTCAATGTGGTAAAACCACGATATATAGCAAATAAATTTGCAAAAATGATATTGCAGATTGGCAATTGAAGTGCAATGCCGGAGCTTATATATGTGATGCATTTCCTATGTTATCATGTTTCGTTCATTTGTTTTATCATGCTGCTACGAGATCTTTCAACTATCATATTCTTGCTCTATCAGATGCTTATGACACACACTAAGTGTGACTAAAAAACAATTTGAGACTTGAGTCACTAGAGTATAGTTCAACTGTGTATCTCCTTTAGACCGCAATGTTTATTCTAGCTATTTCCCCTCCCATAAGTAGTTATAAGCTGGTCAAATAAGCTTGAACTTTAGCAGAGTATGGAAGAATGTCATTTGTGATAGACTGATGTAAGTAAGTTTGCTTCAACTTCTGGGAATACCTGCATTATTAGTTTTAACAAAGATTCTTATGCTGTATTAAGGCTACATTTCCAAAAGGAGAGGAAAGGAAACTTGATTTATGTCTTATCATCTGATGACTTTGAGTTCATCTTGGAAAAAAATTACATACTCCCTCCGTTTCAATTTGGTTATTTGGTTTTAACTTGTACTTCTGCTATATCCATCTCACGGGATTTGTAGGATCAAATGATATAGCTAGTCAAATCACTAGTTCTTTCTCTTTGCAGCCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAACGTGAGCTACATTTCTCATTTATCTTGGTGATTTATGTCCATCACTTATGCAGTTTATATTCCTTTTTGCTGCTCTAAAATGCTCGACGACTTCACGAGTTGTTGCCAGATCAATTCTAAGTTTATGCTTTTTGCTGAATATTCCGGATGCCAATAACCTAATACATCCATGTAATACTATGGATATCAATAACCTAATAATCCATGTAGTACTTTGGATATCAATAACCTAAATTTATGCTTTTTGCTGACTGAACTTACCTATCACCTAACAGTTCTATAAACAGGAAATAAGAGATCATCTCACTCAACTCTATGTGACCAAAAAAATTGTAGTATTCAAAATACCTTGCATTCTCCTTTAAGTGTAATAAAATGCCTTTAACTAATCAAGGCAGGCCAGGGGTTAAAAAATTTTCGACATTATACTCCTTGGTAAAAGTCCTAATTGGTGGGCCTAATAATGGGATATGATCTTCCCTCTACGGGAAGGAATACCATTCCCCTACCTTGTGGAAAAAGCGTTGAATGTAAGGGGTTCCAAATAAAAATAAAAATCTAATGGCCTCCTTGGCGGGGGGGGGGAAGGGTTTTTGGGGGCCCCCCTAAAATTCCCAAATTTTGGCTCCCGGTGGAATTACAAATGTTTAAATGACCCTTTCCCACAAAAAAAAATTTTGGGGGGACCCAAATCTCAAAAACCCCCAAACTGGGGGGGGACCTTTTTAAAACGGGGGTTGAAAAAAAAGTGGGTTATTACGGGTTAAAAAGGGGCGCCGTAGCACTCCAAAAGAGGGGGGGGGGCCCCGGTTTTTTTTAAAGGGGTGCCCCCCCCCCCCTTTTTTGGTCCTCTGGCGCGGAGAATTAACGTCCGCGTTTTTTCACAAAATATTGTCGCCAAAAAACAAAAATTGTTTGGGACCCCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCCGTTTGAGTTAACAAGTTTCAAATGACTCTATCAACTAAAAAACATATGCTGCTAGCTAAACTTCACAAATTCCTTAATCTTGTTTGATCTTCTTTTTAGCTTGGTATTGAGTATAACGTGTGTATTTCATGTGTCAATAGGTTGCCTTGATGCTATCAGGAATGGGCAGTGGAGCCATGGATGTATTCAGAATGGTAAACCCTAATTCCATTTTTTTTGTCTCTTTTGTCCGTATGAGTTTAATGTCTAGTTGATGTTATCATGATATTTTGTCCTTGAGATGTCCATAATTTTGTTGTAGCTTACAGTGTTCCACATGTTATCTACAACTATTCTGTTATTTTATTTTTTCGAGACCACCATTAGTTCTGTTTCTTCATTTGGACTTCTAAGTGAAATGATGGTTTGTGCACACTCTCGGAATGATTTGTACAGTTGCTGAATTAGCAAGTCATTATTTTTAAGAAATGTTCTGATAGTGAAGCTCTTTGCATATAAAGTTCAGCTAATGATTTTCTCTTCTCCAATTCCCTTCGCGCATTTGAATTATGTCAAAATACTTTATGATGCAGGCGAGCACGCGGTGGGAAAAACGACAATCTAAAGTTCTGGTATGAACTCTTGGCTCAAGTGTTTAAATATACGTCTACCAACCTTATTATATTCATCGTTCAGTTAGCTTGTTTTGCTTATGTGCAAATTGAAGCGCTTGTTGACAATATTTAGGACAGTGGTATTTTATATATGCCATAGCGCACATGGTACGTGTTTGCAAATGGTTTACTTTTATGCATGTTCCAGATTTCAATTGGCTTTTCATGCCTTAAGAAGTTTTAAGTTCTAGTAAATTTACGCATGGTGCTGCAGTTTCCTCTATTTGTTGTTCATTTTTGTCTCCTTTTGAGCAGAGAAATTTCTATGACATTAGATATTGCTTCGGATATTGTTAGTTAACGGTAGAGGGATACATAAAGTTGTTTCTATACGGGATATTTTTCTCGATTTTCCTCCTATTGATAGTTGTAGCATTGTGATTAGATAGAAAACTTGTATGACATGTAAGTTACTGCAGGAACAAGCTAAAGTCAGAATGATGAAGAAGAAAAATTCTGAGAAAACTGAATCATACTGGGATAACCTATGGGGCGATCGTAAAGACTACACAAAGACAGGTAGGAAAAACAAGCCTAGATAAACTTGCTAATGCATATTATCCATGTAACCTCATTTGATTTGGTTTCTACAGAGGAGGAAGTGGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACTCAAGGAGAGGTGCTGACAAACCTCCTACCTTTAAACTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGACTTTGCAGTGCACGGTACATGCATCTCACCTTTGTAAAATATGGTACATTTAGATATAGTATATTCATGATAGTCATGGTTCCTCCCCATATCGATGTAATTATATAGCTAAAATTGACCTCGGGTACATCTATCTGTATGTAAGATCATTCATAATTCAATAAAAGTTGTATGGAGAAAACAATTATTCAACCTGTGTA-TTCGTCGTTTGATATTCATGATT-GATGGTTCT</genome_strand>
        <mrna_strand>TGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCTTGATGCTATCAGGAATGGGCAGTGGAGCCATGGATGTATTCAGAATG..........................................................................................................................................................................................................................................................................................................................................................................................GCGAGCACGCGGTGGGAAAAACGACAATCTAAAGTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAGCTAAAGTCAGAATGATGAAGAAGAAAAATTCTGAGAAAACTGAATCATACTGGGATAACCTATGGGGCGATCGTAAAGACTACACAAAGACAG..........................................................................AGGAGGAAGTGGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACTCAAGGAGAGGTGCTGACAAACCTCCTACCTTTAAACTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGACTTTGCAGTGCACGGTACATGCATCTCACCTTTGTAAAATATGGTACATTTAGATATAGTATATTCATGATAGTCATGGTTCCTCCCCATATCGATGTAATTATATAGCTAAAATTGACCTCGGGTACATCTATCTGTATGTAAGATCATTCATAATTCAATAAAAGTTGTATGGAGAAAACAATTATTCAACCTGTGTATTTCGTCGTTTGATATTCATGATTNGATGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E738179" ref_strand="+" ref_description="SGN-E738179 [LC12CG01]">
      <seq>gcggtgggaaaaacgacaatctaaagttctggaacaagctaaagtcagaatgatgaagaagaaaaattctgagaaaactgaatcatactgggataacctatggggcgatcgtaaagattacacaaagacagaggaggaagtggaagatagatcaaaacgagctgcagcagctgctcgcaaatggagagagtactcaaggagaggtgctgacaaacctcctacctttaaacttcccgaggccatctctaatgacaattgacatatacttcctaaccgactttgcagtgcacggtacatgcatctcacctttgtaaaatatggtacatttagatatagtatattcatgatagtcatggttcctccccatatcgatgtaattatatagctaaaattgacctcgggtacatctatctgtatgtaagatcattcataattcaataaaagttgtatggagaaaacaattattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="17708" stop="19311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18008" g_stop="18038" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18039" i_stop="18499" i_length="461">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18500" g_stop="18599" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="131" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18600" i_stop="18673" i_length="74">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18674" g_stop="19019" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="477" r_length="346" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E738179" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18008" e_stop="18038"/>
          <exon e_start="18500" e_stop="18599"/>
          <exon e_start="18674" e_stop="19019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGTGGGAAAAACGACAATCTAAAGTTCTGGTATGAACTCTTGGCTCAAGTGTTTAAATATACGTCTACCAACCTTATTATATTCATCGTTCAGTTAGCTTGTTTTGCTTATGTGCAAATTGAAGCGCTTGTTGACAATATTTAGGACAGTGGTATTTTATATATGCCATAGCGCACATGGTACGTGTTTGCAAATGGTTTACTTTTATGCATGTTCCAGATTTCAATTGGCTTTTCATGCCTTAAGAAGTTTTAAGTTCTAGTAAATTTACGCATGGTGCTGCAGTTTCCTCTATTTGTTGTTCATTTTTGTCTCCTTTTGAGCAGAGAAATTTCTATGACATTAGATATTGCTTCGGATATTGTTAGTTAACGGTAGAGGGATACATAAAGTTGTTTCTATACGGGATATTTTTCTCGATTTTCCTCCTATTGATAGTTGTAGCATTGTGATTAGATAGAAAACTTGTATGACATGTAAGTTACTGCAGGAACAAGCTAAAGTCAGAATGATGAAGAAGAAAAATTCTGAGAAAACTGAATCATACTGGGATAACCTATGGGGCGATCGTAAAGACTACACAAAGACAGGTAGGAAAAACAAGCCTAGATAAACTTGCTAATGCATATTATCCATGTAACCTCATTTGATTTGGTTTCTACAGAGGAGGAAGTGGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACTCAAGGAGAGGTGCTGACAAACCTCCTACCTTTAAACTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGACTTTGCAGTGCACGGTACATGCATCTCACCTTTGTAAAATATGGTACATTTAGATATAGTATATTCATGATAGTCATGGTTCCTCCCCATATCGATGTAATTATATAGCTAAAATTGACCTCGGGTACATCTATCTGTATGTAAGATCATTCATAATTCAATAAAAGTTGTATGGAGAAAACAATTATTCAACCTGTGTA</genome_strand>
        <mrna_strand>GCGGTGGGAAAAACGACAATCTAAAGTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAGCTAAAGTCAGAATGATGAAGAAGAAAAATTCTGAGAAAACTGAATCATACTGGGATAACCTATGGGGCGATCGTAAAGATTACACAAAGACAG..........................................................................AGGAGGAAGTGGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACTCAAGGAGAGGTGCTGACAAACCTCCTACCTTTAAACTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGACTTTGCAGTGCACGGTACATGCATCTCACCTTTGTAAAATATGGTACATTTAGATATAGTATATTCATGATAGTCATGGTTCCTCCCCATATCGATGTAATTATATAGCTAAAATTGACCTCGGGTACATCTATCTGTATGTAAGATCATTCATAATTCAATAAAAGTTGTATGGAGAAAACAATTATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E395747" ref_strand="+" ref_description="SGN-E395747 [TUS-17-D24]">
      <seq>ttttttttttagtaaataaaaagctttctatgattaattggaaaaaatttagccaaaacaaatatttacagttagatcaataaaagaaaaggtaatcccatttcatcttcttgaagatatttcttggtttcaaactcggagttcgatgctcgtactggggttctaattaaattcaaatggcgctgagggcaatactcaaccaaaactttttttcgtatccaggactcgaacccgagttactatctaacagtagaagcaacagtatgagcccaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="19955" stop="20823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20248" g_stop="20523" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E395747" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20248" e_stop="20523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAATCTAGTAAATAAAAAGCTTTCTATGATTAATTGGAAAAAATTTAGCCAAAACAAATATTTACAGTTAGATCAATAAAAGAAAAGGTAATCCCATTTCATCTTCTTGAAGATATTTCTTGGTTTCAAACTCGGAGTTCGATGCTCGTACTGGGGTTCTAATTAAATTCAAATGGCGCTGAGGGCAATACTCAACCAAAACTTTTTTTCGTATCCAGGACTCGAACCCGAGTTACTATCTAACAGTAGAAGCAACAGTATGAGCCCAAAAC</genome_strand>
        <mrna_strand>TTTTTTTTTTAGTAAATAAAAAGCTTTCTATGATTAATTGGAAAAAATTTAGCCAAAACAAATATTTACAGTTAGATCAATAAAAGAAAAGGTAATCCCATTTCATCTTCTTGAAGATATTTCTTGGTTTCAAACTCGGAGTTCGATGCTCGTACTGGGGTTCTAATTAAATTCAAATGGCGCTGAGGGCAATACTCAACCAAAACTTTTTTTCGTATCCAGGACTCGAACCCGAGTTACTATCTAACAGTAGAAGCAACAGTATGAGCCCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E203753" ref_strand="+" ref_description="SGN-E203753 [cLEC-17-G14]">
      <seq>tatttttttcttcttcaaaattgaatcttttcagtgaacttttactatttggtcaatcaagaagtgaaattacagagcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="29629" stop="34887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29929" g_stop="30249" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30250" i_stop="34423" i_length="4174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34424" g_stop="34587" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="485" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E203753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29929" e_stop="30249"/>
          <exon e_start="34424" e_stop="34587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAG</genome_strand>
        <mrna_strand>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E203863" ref_strand="+" ref_description="SGN-E203863 [cLEC-17-E22]">
      <seq>tatttttttcttcttcaaaattgaatcttttcagtgaacttttactatttggtcaatcaagaagtgaaattacagagcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="29629" stop="34870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29929" g_stop="30249" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30250" i_stop="34423" i_length="4174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34424" g_stop="34570" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="468" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E203863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29929" e_stop="30249"/>
          <exon e_start="34424" e_stop="34570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCT</genome_strand>
        <mrna_strand>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E376734" ref_strand="+" ref_description="SGN-E376734 [TUS-19-O22]">
      <seq>ttttcttcttcaaaattgaatcttttcagtgaacttttactatttggtcaatcaagaagtgaaattacagagcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcatatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctaatacttcatggaaacttctgcattagaagcgaccaacgtgaaaatgcgtttactgaagctttcacgcagatataccggatcgtcagtaagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="29634" stop="35046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29934" g_stop="30249" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30250" i_stop="34423" i_length="4174">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34424" g_stop="34746" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="639" r_length="323" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E376734" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29934" e_stop="30249"/>
          <exon e_start="34424" e_stop="34746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCT-ATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAG</genome_strand>
        <mrna_strand>TTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCATATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTAATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACG-TGAAAATGCGTTTACTGAAGCTTTCACGCAGATATACCGGATCGTCAGTAAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E233218" ref_strand="+" ref_description="SGN-E233218 [cLED-6-C3]">
      <seq>ttttcttcttcaaaattgaatcttttcagtgaacttttactatttggtcaatcaagaagtgaaattacagagcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="29634" stop="34955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29934" g_stop="30249" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30250" i_stop="34423" i_length="4174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34424" g_stop="34655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="548" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E233218" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29934" e_stop="30249"/>
          <exon e_start="34424" e_stop="34655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATAC</genome_strand>
        <mrna_strand>TTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E231719" ref_strand="+" ref_description="SGN-E231719 [cLED-4-L19]">
      <seq>ttttcttcttcaaaattgaatcttttcagtgaacttttactatttggtcaatcaagaagtgaaattacagagcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="29634" stop="34869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29934" g_stop="30249" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30250" i_stop="34423" i_length="4174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34424" g_stop="34569" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="462" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E231719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29934" e_stop="30249"/>
          <exon e_start="34424" e_stop="34569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGC</genome_strand>
        <mrna_strand>TTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E617614" ref_strand="+" ref_description="SGN-E617614 [66466]">
      <seq>ctcttcttcaaaattgaatcttttctgtgtatttttactttttggtcaatcaagaagtaaaattgcagagcaagaagatggcaggttatagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatcaaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggcaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtggtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgatgaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattggaagcaaccaacgttgaaaatgcgtttactgaagctctcacacagatatatcgaattgtcagtaagaaagcagttgaggcaggcgatgaaggtgctacttcatctgcaccacctaaaggacagacaattaacatcaaagatgaagggtctgcttggaaaaagtttgggtgctgttcgaggctagggctcgaggaaactacgtaagacaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="29637" stop="35175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29936" g_stop="30249" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30250" i_stop="34423" i_length="4174">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34424" g_stop="34866" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="742" r_length="444" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E617614" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29936" e_stop="30249"/>
          <exon e_start="34424" e_stop="34866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGA-GCTAGGGCTCAC</genome_strand>
        <mrna_strand>CTCTTCTTCAAAATTGAATCTTTTCTGTGTATTTTTACTTTTTGGTCAATCAAGAAGTAAAATT-----GC---AG-AG-CA-AG-----AAGATGGCAGGTTATAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCAAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGCAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTGGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGATGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTGGAAGCAACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACACAGATATATCGAATTGTCAGTAAGAAAGCAGTTGAGGCAGGCGATGAAGGTGCTACTTCATCTGCACCACCTAAAGGACAGACAATTAACATCAAAGATGAAGGGTCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGGCTAGGGCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E268493" ref_strand="+" ref_description="SGN-E268493 [cLEI-13-I13]">
      <seq>caaaattgaatcttttcagtgaacttttactatttggtcaatcaagaagtgaaattacagagcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="29644" stop="34975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29944" g_stop="30249" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30250" i_stop="34423" i_length="4174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34424" g_stop="34675" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="558" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E268493" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29944" e_stop="30249"/>
          <exon e_start="34424" e_stop="34675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATT</genome_strand>
        <mrna_strand>CAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E744773" ref_strand="+" ref_description="SGN-E744773 [GI|6688534]">
      <seq>ggacgaggcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcaaatttgggatactgctggtcaagaaaggtatcgtgccattacaattgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattagaagcgaccaacgttgaaaatgcgtttactgaagctctcacgcagatataccggatcgtcagtaagaaagcagtcgaggcaggggacgaaggtgctacttcaaccgcaccacctaaaggacagacgattaatatcaaagatgaaggatctgcttggaaaaagtttgggtgctgttcgagctagggctcacgtaagacaatagctcaagctttatatatcagttgtaaattgtcattaaatcaatgatttcctctccctgttttctctcactttgggtatcgcgattgtgggatataagatttattctatagtcatgagaatacgtgaagcagcgcgttctcatgaaaaattccgaaggaggatcaggtactgctagtttctaattacagaatgtctaaacaaggtcttagttttatgttttctggttgatggcttgaaaaactggagatatctttgcaataacctgttaccgaatatcttcttatttgtctcgaatttacgtcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="29700" stop="35483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30004" g_stop="30249" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="252" r_length="246" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30250" i_stop="34423" i_length="4174">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34424" g_stop="35182" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="1011" r_length="759" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1012" polyA_stop="1028"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E744773" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1005</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30004" e_stop="30249"/>
          <exon e_start="34424" e_stop="35182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTA</genome_strand>
        <mrna_strand>GGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAAATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACAATTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E273657" ref_strand="+" ref_description="SGN-E273657 [cLEN-6-L11]">
      <seq>tgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgagccattacgagtgcttattatcggggagctgtcggtgctttgctcggatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattagaagcgaccaacgttgaagatgcgtttactgaagctctcacgcagatataccggatcgtcagtaagaaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="29781" stop="35049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30081" g_stop="30249" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30250" i_stop="34423" i_length="4174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34424" g_stop="34749" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="495" r_length="326" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E273657" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30081" e_stop="30249"/>
          <exon e_start="34424" e_stop="34749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAG</genome_strand>
        <mrna_strand>TGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGAGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGGATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAGATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E317989" ref_strand="+" ref_description="SGN-E317989 [cTOA-30-J17]">
      <seq>gggaactagtctcgagttttttttttttttttttgtgtgtttgggatttagatgagtgagaagtgcttgtgggtttgttggtttaatcttatttttggtaaggttcttcaaatgatgttgtgtttattggtattttctaagagtgtctagatgtgctgttgttgcttgattgggatttcttgtctttgggtgtggtatctgtgttcctaattgaaattcgagggacatggagtgcttactgcaaccaattatatataaaaaaaaaagaagaatatttttccgtgtttggttcatgaaaaagaatatcgtgagagcattttgaagacgtaatgaagtaaatcaaagtgtgttgccccaatggacttttagatgagatgatcatacaattcaacatttgtgcaggctatgtgtgctcctagttgtttagatgctattgtgatgtcaatctgaaagctaattatagaaattgtagtatccaaatttgttgttttaaaattatttgaacttattcagttcccgcacgagtacattggcaggtatgttttttctaatatgaaaaataattgaccaaagtaactcaatatttcctcataatttttgaaatccttagctattttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="13258" stop="31870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30602" g_stop="30617" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30618" i_stop="30964" i_length="347">
            <donor d_prob="0.879" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30965" g_stop="31570" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="621" r_length="606" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E317989" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30602" e_stop="30617"/>
          <exon e_start="30965" e_stop="31570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTG</genome_strand>
        <mrna_strand>GGGAAC-TAGTCTCGA...........................................................................................................................................................................................................................................................................................................................................................GTTTTTTTTTTTTTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E544322" ref_strand="+" ref_description="SGN-E544322 [TUS-66-J13]">
      <seq>gtgatgattataagacatataaaacatgttaataaaaaggagtagagaagtatatgcgaaaattcaaactacaaacttagttccaaactaaactgtcattttgaaatatagatgttttacatggattcttcattaatcattatcatcaatatacgtgtttgagtgattgtgatgtgggcatggttacttcatgtagatacactcaaaattagcgaaaagtctataagtacacatactagatacgtatgcacatcataggaataataaatctttggattagttaggcataaactaaaccaagatgcccccaaggcctagctcgagtggcaaaaggtggaggatttgtgacttaggtcgcaggttcaagcccacaccatgcaaagcgaagcctggtatttaagtggggaagggtaagaaggggtggacccattatccaccgagtttagaaggttgtgattggtccaaagggcagtgggtcacggataaataaataattggaagtcatatttgtatgtgatacaacttaaagtactgacaaaaagaattgagatacaacttaaggtaacattcgaacttctgtaggattttttagtaaaggtggttttcaggccattttgagccacctgttacgttctaaatcaccagtatagttatccggtaactgtctatcaaagcttagacaaatgggaagatgtcaccctacattttttgcctatgctaggacttgatcccagaaatcccatggttttaatctatttcattgacactaccctggctttttataacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="31968" stop="33356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32268" g_stop="33056" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E544322" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32268" e_stop="33056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGT-AG-AGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCT</genome_strand>
        <mrna_strand>GTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAAGAAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAAT-CACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E306241" ref_strand="+" ref_description="SGN-E306241 [cLEY-13-D18]">
      <seq>tgatgattataagacatataaaacatgttaataaaaaggagtagagaagtatatgcgaaaattcaaactacaaacttagttccaaactaaactgtcattttgaaatatagatgttttacatggattcttcattaatcattatcatcaatatacgtgtttgagtgattgtgatgtgggcatggttacttcatgtagatacactcaaaattagcgaaaagtctataagtacacatactagatacgtatgcacatcataggaataataaatctttggattagttaggcataaactaaaccaagatgcccccaaagcctagctcgagtggcaaaaggtggaggatttgtgacttaagtcgcaggttcaagcccacaccatgcaaagcgaagcctggtatttaagtggggaaaggtagaggggtggacccattatccaccgagtttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="31969" stop="33011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32269" g_stop="32711" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E306241" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32269" e_stop="32711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAG</genome_strand>
        <mrna_strand>TGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAAGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAAGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E544321" ref_strand="-" ref_description="SGN-E544321 [TUS-66-J13]">
      <seq>gaaagggaatgtattgggatgcatccttgttcctttaagttgttgtactattgcttcagtttttcttcttcataccaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattagaagcgaccaacgttgaaaatgcgtttactgaagctctcacgcagatataccggatcgtcagtaagaaagcagtcgaggcaggggacgaaggtgctacttcaaccgcaccacctaaaggacagacgattaatatcaaagatgaaggatctgcttggaaaaagtttgggtgctgttcgagctagggctcacgtaagacaatagctcaagctttatatatcagttgtaaattgtcattaaatcaatgatttcctctccctgttttctctcactttgggtatcgcgattgtgggatataagatttattctatagtcatgagaatacgtgaagcagcgcgttctcatgaaaaattccgaaggaggatcaggtactgctagtttctaattacagaatgtctaaacaaggtcttagttttatgttttctggttgatggcttgaaaaactggagatatctttgcaataaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="34046" stop="35438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34346" g_stop="35131" g_length="786"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="786" r_length="786" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="789" polyA_stop="809"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E544321" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544321" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34346" e_stop="35131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTT</genome_strand>
        <mrna_strand>GAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E622949" ref_strand="+" ref_description="SGN-E622949 [73322]">
      <seq>ggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtggtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgatgaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattggaagcaaccaacgttgaaaatgcgtttactgaagctctcacacagatatatcgaattgtcagtaagaaagcagttgaggcaggcgatgaaggtgctacttcatctgcaccacctaaaggacagacaattaacatcaaagatgaagggtctgcttggaaaaagtttgggtgctgttcgagctagggctcgaggaaactacgtaagacaatagctcaagctttatatatcagttgtaaattgtcattaaatcaatgatttcctctcctgttttctctctctttgggatataagatttatgctgtagtcatgagaatacgcgaagtagcgttctcatgaaaaattccgaaggaggagcaggtactgctagtttctaattacagaatgtctaaacaaggtcttagttttatgtgttctggttgatggcttgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="34153" stop="35417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34453" g_stop="35117" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E622949" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34453" e_stop="35117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCT--------C-ACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAA</genome_strand>
        <mrna_strand>GGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTGGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGATGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTGGAAGCAACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACACAGATATATCGAATTGTCAGTAAGAAAGCAGTTGAGGCAGGCGATGAAGGTGCTACTTCATCTGCACCACCTAAAGGACAGACAATTAACATCAAAGATGAAGGGTCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCGAGGAAACTACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCT-CCTGTTTTCTCT--C--------T--C--TT-TGGGATATAAGATTTATGCTGTAGTCATGAGAATACGCGAAGTA--GCGTTCTCATGAAAAATTCCGAAGGAGGAGCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTGTTCTGGTTGATGGCTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E239707" ref_strand="+" ref_description="SGN-E239707 [cLED-33-C3]">
      <seq>ggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattagaagcgaccaacgttgaaaatgcgtttactgaagctctcacgcagatataccggatcgtcagtaagaaagcagtcgaggcaggggacgaaggtgctacttcaaccgcaccacctaaaggacagacgattaatatcaaagatgaaggatctgcttggaaaaagtttgggtgctgttcgagctagggctcacgtaagacaatagctcaagctttatatatcagttgtaaattgtcattaaatcaatgatttcctctccctgttttctctcactttgggtatcgcgattgtgggatataagatttattctatagtcatgagaatacgtgaagcagcgcgttctcatgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="34222" stop="35326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34522" g_stop="35026" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E239707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34522" e_stop="35026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAAT</genome_strand>
        <mrna_strand>GGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E231675" ref_strand="+" ref_description="SGN-E231675 [cLED-4-I10]">
      <seq>ggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattagaagcgaccaacgttgaaaatgcgtttactgaagctctcacgcagatataccggatcgtcagtaagaaagcagtcgaggcaggggacgaaggtgctacttcaaccgcaccacctaaaggacagacgattaatatcaaagatgaaggatctgcttggaaaaagtttgggtgctgttcgagctagggctcacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="34222" stop="35168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34522" g_stop="34866" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E231675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34522" e_stop="34866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCAC</genome_strand>
        <mrna_strand>GGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E376733" ref_strand="-" ref_description="SGN-E376733 [TUS-19-O22]">
      <seq>aacattgtagtcatgctcctaggcaacaaatcagatttccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattagaagcgaccaacgttgaaaatgcgtttactgaagctctcacgcagatataccggatcgtcagtaagaaagcagtcgaggcaggggacgaaggtgctacttcaaccgccccccctaaaggacagacgattaatatcaaagatgaaggatctgcttggaaaaagtttgggtgctgttcgagctagggctcacgtaagacaatagctcaagctttatatatcagttgtaaattgtcattaaatcaatgatttcctctccctgttttctctcactttgggtatcgcgattgtgggatataagatttattctatagtcatgagaatacgtgaagcagcgcgttctcatgaaaaattccgaaggaggatcaggtactgctagtttctaattacagaatgtctaaacaaggtcttagttttatgttttctggttgatggcttgaaaaactggagatatctttgcaataacctgttaccgaatatctttttatttgtctcgaatttacgtcttaattatttttccccttctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="34254" stop="35503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34554" g_stop="35203" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="670"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E376733" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376733" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34554" e_stop="35203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAA</genome_strand>
        <mrna_strand>AACATTGTAGTCATGCTCCTAGGCAACAAATCAGATTTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCCCCCCCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTTTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E306882" ref_strand="+" ref_description="SGN-E306882 [cLEY-11-N4]">
      <seq>tcaaccgcaccacctaaaggacagacgattaatatcaaagatgaaggatctgcttggaaaaagtttgggtgctgttcgagctagggctcacgtaagacaatagctcaagctttatatatcagttgtaaattgtcattaaatcaatgatttcctctccctgttttctctcactttgggtatcgcgattgtgggatataagatttattctatagtcatgagaatacgtgaagcagcgcgttctcatgaaaaattccgaaggaggatcaggtactgctagtttctaattacagaatgtctaaacaaggtcttagttttatgttttctggttgatggcttgaaaaactggagatatctttgcaataacctgttaccgaatatcttcttatttgtctcgaatttacgtcttaattatttttccccttctaaaagtgtatttcctgagctgagtagcaatgtttgttgttcatgatatgtgtagtttgataaattaaagtagaacatggcaaggtgtgcccagagttgatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="34476" stop="35603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34776" g_stop="35311" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E306882" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34776" e_stop="35311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAAGTGTATTTCCTGAGCTGAGTAGCAATGTTTGTTGTTCATGATATGTGTAGTTTGATAAATTAAAGTAGAACATGGCAAGGTGTGCCCAGAGTTGATTTAAGTGGATGA</genome_strand>
        <mrna_strand>TCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAAGTGTATTTCCTGAGCTGAGTAGCAATGTTTGTTGTTCATGATATGTGTAGTTTGATAAATTAAAGTAGAACATGGCAAGGTGTGCCCAGAGTTGATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E747263" ref_strand="+" ref_description="SGN-E747263 [GI|47104699]">
      <seq>tcgagtttttttttctaatttctatatgatataaaacaaaatttagttaatcctcaaaaagtttttattttctttcttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaagcggcggaagttagcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtcttggagaaaatatggacaaaaaccaattaaaggatcaccttatcccaggggatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgcttctcattacctattgctccgaacacaatcaccaaatcccggccgccgccgccgccaaacaccaccatcacaaccaccctactaccaccaccagttcacccactacctctaccggcaccgccggagacaataatgctactgcggctgtagccacggactctaccgtagtagacaaatcatcccccgaagaaccagatctatttgcttatcaacacgataatggattttcagagctcgccggtgagttaggttggttttccgatatgggaacaacaactacgtttatggagagtacgtcgtcgtccatggcgggatccacgtggaacgacagtgacgtggcgttaatgttgccgattcgagaagaggatcagtcgttgtacggtgatctcggtgaattaccggaatgttcagttgttttccggcggtacagtgtggaaactccctgctgcggaggtacaggataacaaatcatttgtcaatttttcactgaaattgccatatttttattttttaattatcttcctgacttttggttccacgttcttcgtgacccttttttttaattttatttttatgtaaagatctggtagattaaaaaaaaaaagaaatatactttgatttgatttttacttgaaaaacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="40103" stop="4021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39805" g_stop="39548" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39547" i_stop="39334" i_length="214">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39333" g_stop="39187" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="405" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39186" i_stop="36759" i_length="2428">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36758" g_stop="36044" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="1120" r_length="715" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36043" i_stop="35776" i_length="268">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35775" g_stop="35752" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1121" r_stop="1144" r_length="24" r_score="0.708"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E747263" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1144</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39805" e_stop="39548"/>
          <exon e_start="39333" e_stop="39187"/>
          <exon e_start="36758" e_stop="36044"/>
          <exon e_start="35775" e_stop="35752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGATCCACGTGGAACGACAGTGACGTGGCGTTAATGTTGCCGATTCGAGAAGAGGATCAGTCGTTGTACGGTGATCTCGGTGAATTACCGGAATGTTCAGTTGTTTTCCGGCGGTACAGTGTGGAAACTCCCTGCTGCGGAGGTACAGGATAACAAATCATTTGTCAATTTTTCACTGAAATTGCCATATTTTTATTTTTTAATTATCTTCCTGACTTTTGGTTCCACGTTCTTCGTGACCCTTTTTTTTAATTTTATTTTTATGTAAAGATCTGGTAGATTAAAAAAAAAAAGAAATATACTTTGATTTGATTTTTACTTGAAGCCATTGAGCTGCTTTTGTAATTTTTACAATAAAAATATAGTCTAAATTTGAAGATTATAAATTTAAAATTTTCGTTATTTTAGTCAAAATTATCAAATCATAATAAAAAAAGCTAAGATCACTCTCTAATCTCTATTCACATTTTGGAGGCCTACTTATTGCTTTACAAAGATATTTGGTGCCTGGCGGCTTATTTGGTTCCCTTTTTTTTGACTTATTGGACTATTTTCATTTTTTTCTGTTTGATAAAAACAAATACTTTTTTTAAAAAAAAAAAAAAACTATATTCAA</genome_strand>
        <mrna_strand>TCGAGTTTTTTTTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGATCCACGTGGAACGACAGTGACGTGGCGTTAATGTTGCCGATTCGAGAAGAGGATCAGTCGTTGTACGGTGATCTCGGTGAATTACCGGAATGTTCAGTTGTTTTCCGGCGGTACAGTGTGGAAACTCCCTGCTGCGGAGGTACAGGATAACAAATCATTTGTCAATTTTTCACTGAAATTGCCATATTTTTATTTTTTAATTATCTTCCTGACTTTTGGTTCCACGTTCTTCGTGACCCTTTTTTTTAATTTTATTTTTATGTAAAGATCTGGTAGATTAAAAAAAAAAAGAAATATACTTTGATTTGATTTTTACTTGAA............................................................................................................................................................................................................................................................................AAACAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E623857" ref_strand="+" ref_description="SGN-E623857 [89001]">
      <seq>ggcggaagttagcatgccatcaccaagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtcttggagaaaatatggacaaaaaccaattaaaggatcaccttatcccaggngatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgcttctcattacctattgctccgaacacaaccaccaaatcccggccgccgccgccgccaaacaccaccacaacaaccaccctactaccaccaccagttcacccactacctctaccggcaccgccggagacaacaatgcaacggcggctgtagccccggactctaccgtactagacaaatcatctccggaagaaccagatctatttgcttatcaacacgataatggattttcagagctcgccggtgagttaggttggttttccgatatgggaacaactactacattgatggagagcacgtcgtcgtcaatggtgggatccacgtggaacgatagtgacgtggcgttaatgttgccgattcgggaggaggatcagtcgttgttcggtgatctcggtgaattgccggaatgttcagtcgttttccggcggtacagtgtggaaactccctgctgcggcggtacaggataacaaatcatttgtcaatttttcactgaaattgccaaacgaatttttattttattttttaattaccttcctgactaacgtttttttttttttgggtccacgttcttcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="39880" stop="35851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39580" g_stop="39548" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39547" i_stop="39334" i_length="214">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39333" g_stop="39187" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="180" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39186" i_stop="36759" i_length="2428">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36758" g_stop="36182" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="757" r_length="577" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E623857" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39580" e_stop="39548"/>
          <exon e_start="39333" e_stop="39187"/>
          <exon e_start="36758" e_stop="36182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGATCCACGTGGAACGACAGTGACGTGGCGTTAATGTTGCCGATTCGAGAAGAGGATCAGTCGTTGTACGGTGATCTCGGTGAATTACCGGAATGTTCAGTTGTTTTCCGGCGGTACAGTGTGGAAACTCCCTGCTGCGGAGGTACAGGATAACAAATCATTTGTCAATTTTTCACTGAAATTGCC</genome_strand>
        <mrna_strand>GGCGGAAGTTAGCATGCCATCACCAAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GNGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAACCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCACAACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAACAATGCAACGGCGGCTGTAGCCCCGGACTCTACCGTACTAGACAAATCATCTCCGGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACTACTACATTGATGGAGAGCACGTCGTCGTCAATGGTGGGATCCACGTGGAACGATAGTGACGTGGCGTTAATGTTGCCGATTCGGGAGGAGGATCAGTCGTTGTTCGGTGATCTCGGTGAATTGCCGGAATGTTCAGTCGTTTTCCGGCGGTACAGTGTGGAAACTCCCTGCTGCGGCGGTACAGGATAACAAATCATTTGTCAATTTTTCACTGAAATTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E210676" ref_strand="+" ref_description="SGN-E210676 [cLEC-68-N15]">
      <seq>acaaaatttagttaatcctcaaaaagtttttattttctttctttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaagcggcggaagttagcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtctttgagaaaatatggacaaaaaccaattaaaggatcaccttatcccaggggatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgcttctcattacctattgctccgaacacaatcaccaaatcccggccgccgccgccgccaaacaccaccatcacaaccaccctactaccaccaccagttcacccactacctctaccggcaccgccggagacaataatgctactgcggctgtagccacggactctaccgtagtagacaaatcatcccccgaagaaccagatctatttgcttatcaacacgataatggattttcagagctcgccggtgagttaggttggttttccgatatgggaacaacaactacgtttatggagagtacgtcgtcgtccatggcggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="40070" stop="36065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39770" g_stop="39548" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39547" i_stop="39334" i_length="214">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39333" g_stop="39187" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="371" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39186" i_stop="36759" i_length="2428">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36758" g_stop="36365" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="765" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E210676" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39770" e_stop="39548"/>
          <exon e_start="39333" e_stop="39187"/>
          <exon e_start="36758" e_stop="36365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTC-TTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGA</genome_strand>
        <mrna_strand>ACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTTGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E605104" ref_strand="+" ref_description="SGN-E605104 [21015]">
      <seq>ttttctctctttttctcttctaatttctaaatgataaaaatttagttaaattaagctcaaaaagttttcttttttctaagttatataagttatttttgtttgttttttttggtcatggaagatagtctatacaaaaatccattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaagcggcggaagttagcatgccatcaccaagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtcttggagaaaatatggacaaaaaccaattaaaggatcaccttatcccaggggatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgcttctcattacctattgctccgaacacaaccaccaaatcccggccgccgccgccgccaaacaccaccacaacaaccaccctactaccaccaccagttcacccactacctctaccggcaccgccggagacaacaatgcaacggcggctgtagccacggactctaccgtactagacaaatcatctccggaagaaccagatctatttgcttatcaacacgataatggattttcagagctcgccggtgagttaggttggttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="40029" stop="36119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39810" g_stop="39548" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39547" i_stop="39334" i_length="214">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39333" g_stop="39187" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="398" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39186" i_stop="36759" i_length="2428">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36758" g_stop="36419" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="738" r_length="340" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E605104" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39810" e_stop="39548"/>
          <exon e_start="39333" e_stop="39187"/>
          <exon e_start="36758" e_stop="36419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCC</genome_strand>
        <mrna_strand>TTTTCTCTCTTTTTCTCTTCTAATTTCTAAATGATA-AAAATTTAGTTAAATTAA-GCTCAAAAAG-TTTT-CTTT-TTTC--TAAGTTATATAAGTTAT-T---TT-TGTTTGTTTTTTTTGGTCATGGAAGATAGTCTATACAAAAATCCATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCAAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAACCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCACAACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAACAATGCAACGGCGGCTGTAGCCACGGACTCTACCGTACTAGACAAATCATCTCCGGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E376499" ref_strand="+" ref_description="SGN-E376499 [TUS-17-P17]">
      <seq>ctttttattttctctcattttttcttctaatttctatatgatataaaacaaaatttagttaatcctcaaaaagtttttattttctttcttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaagcggcggaagttagcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtcttggagaaaatatggacaaaaaccaattaaaggatcaccttatcccaggggatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgcttctcattacctattgctccgaacacaatcaccaaatcccggccgccgccgccgccaaacaccaccatcacaaccaccctactaccaccaccagttcacccactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="40117" stop="36272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39817" g_stop="39548" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39547" i_stop="39334" i_length="214">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39333" g_stop="39187" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="417" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39186" i_stop="36759" i_length="2428">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36758" g_stop="36572" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="604" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E376499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39817" e_stop="39548"/>
          <exon e_start="39333" e_stop="39187"/>
          <exon e_start="36758" e_stop="36572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACC</genome_strand>
        <mrna_strand>CTTTTTATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E267166" ref_strand="+" ref_description="SGN-E267166 [cLEI-4-G11]">
      <seq>cgagtttttttttctaatttctatatgatgataaaacggaatttagttaatcctcaaaaagtttttattttctttcttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaagcggcggaagttagcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtcttggagaaaatatggacaaaaaccaattaaaggatcaccttatcccaggggatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgctcttcattacctattgctccgaacacaatcaccaaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="40100" stop="36339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39804" g_stop="39548" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39547" i_stop="39334" i_length="214">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39333" g_stop="39187" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="405" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39186" i_stop="36759" i_length="2428">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36758" g_stop="36639" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="525" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E267166" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39804" e_stop="39548"/>
          <exon e_start="39333" e_stop="39187"/>
          <exon e_start="36758" e_stop="36639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTTTCTTCTAATTTCTATATGAT-ATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCC</genome_strand>
        <mrna_strand>CGAGTTTTTTTTTCTAATTTCTATATGATGATAAAACGGAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTCTTCATTACCTATTGCTCCGAACACAATCACCAAATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E265951" ref_strand="+" ref_description="SGN-E265951 [cLEI-6-M23]">
      <seq>cgagtttttttttctaatttctatatgatataaaacaaaatttagttaatcctcaaaaagtttttattttctttcttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaagcggcggaagttagcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtcttggagaaaatatggacaaaaaccaattaaaggatcaccttatcccaggggatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgcttcttattacctattgctccgaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="40100" stop="36352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39804" g_stop="39548" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39547" i_stop="39334" i_length="214">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39333" g_stop="39187" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="404" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39186" i_stop="36759" i_length="2428">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36758" g_stop="36652" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="511" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E265951" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39804" e_stop="39548"/>
          <exon e_start="39333" e_stop="39187"/>
          <exon e_start="36758" e_stop="36652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACA</genome_strand>
        <mrna_strand>CGAGTTTTTTTTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTTATTACCTATTGCTCCGAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E268098" ref_strand="+" ref_description="SGN-E268098 [cLEI-15-C19]">
      <seq>attttctctcattttttcttctaattgctatatgatataaaacaaaatttagttaatcctcaaaaagtttttattttctttcttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaagcggcggaagttagcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtcttggagaaaatatggacaaaaaccaattaaaggatcaccttatcccacgggatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgcttctcattaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="40111" stop="36366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39811" g_stop="39548" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39547" i_stop="39334" i_length="214">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39333" g_stop="39187" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="411" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39186" i_stop="36759" i_length="2428">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36758" g_stop="36666" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="504" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E268098" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39811" e_stop="39548"/>
          <exon e_start="39333" e_stop="39187"/>
          <exon e_start="36758" e_stop="36666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTA</genome_strand>
        <mrna_strand>ATTTTCTCTCATTTTTTCTTCTAATTGCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E267852" ref_strand="+" ref_description="SGN-E267852 [cLEI-12-G12]">
      <seq>attttctctcattttttcttctaatttctatatgatataaaacaaaatttagttaatcctcaaaaagcttttattttctttcttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaaccggcggaagttatcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtcatttccgtgccaataattgaaggtgatggatcaagaagtaaaggggaagtgtatccaccacaagattcttggacttggagaatatatggacaaaaaccaattgaaggatcaccttatcccaggggatattatcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="40111" stop="38876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39811" g_stop="39548" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39547" i_stop="39334" i_length="214">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39333" g_stop="39187" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="411" r_length="147" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E267852" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39811" e_stop="39548"/>
          <exon e_start="39333" e_stop="39187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG</genome_strand>
        <mrna_strand>ATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGCTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAACCGGCGGAAGTTATCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTCATTTCCGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTGTATCCACCACAAGATTCTTGGACTTGGAGAATATATGGACAAAAACCAATTGAAGGATCACCTTATCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E543570" ref_strand="+" ref_description="SGN-E543570 [TUS-65-H7]">
      <seq>ctgagatccgccattaaacaattcctgatccgattgaagcaatccacgccgagcctctaagttttgataatatttattatcgaattggctcggcgtctggatatctaacggggctaaattactgtctccgccagatgcagggcatgtggccccgagtgtggcggcgaattctgagttgatgttggtggcgttgttgacgcggtcgcggaaactggcgcatcgggcttggccgattgtgtggctgccggagagggcggtcatctcggcggcgttaaggcctttggcggagaacatggagatcaaagttgaaagggtggaagttggcatagggatttgggcgttggcggagcttaggcttgcggttcttgcgtctcttcggcccaattgcacggtccatgttggccctcctagctgcgtaaatacgatgttataaatatatatttaaatttgtataaaattaatttaataaaaaaaatatattttgtttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44142" stop="45230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44442" g_stop="44931" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E543570" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44442" e_stop="44931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGATCCGCCATTAAACAATTCCTGATCCGATTGAAGCAATCCACGCCGAGCCTCTAAGTTTTGATAATATTTATTATCGAATTGGCTCGGCGTCTGGATATCTAACGGGGCTAAATTACTGTCTCCGCCAGATGCAGGGCATGTGGCCCCGAGTGTGGCGGCGAATTCTGAGTTGATGTTGGTGGCGTTGTTGACGCGGTCGCGGAAACTGGCGCATCGGGCTTGGCCGATTGTGTGGCTGCCGGAGAGGGCGGTCATCTCGGCGGCGTTAAGGCCTTTGGCGGAGAACATGGAGATCAAAGTTGAAAGGGTGGAAGTTGGCATAGGGATTTGGGCGTTGGCGGAGCTTAGGCTTGCGGTTCTTGCGTCTCTTCGGCCCAATTGCACGGTCCATGTTGGCCCTCCTAGCTGCGTAAATACGATGTTATAAATATATATTTAAATTTGTATAAAATTAATTTAATAAAAAAAATATATTTTGTTTGAC</genome_strand>
        <mrna_strand>CTGAGATCCGCCATTAAACAATTCCTGATCCGATTGAAGCAATCCACGCCGAGCCTCTAAGTTTTGATAATATTTATTATCGAATTGGCTCGGCGTCTGGATATCTAACGGGGCTAAATTACTGTCTCCGCCAGATGCAGGGCATGTGGCCCCGAGTGTGGCGGCGAATTCTGAGTTGATGTTGGTGGCGTTGTTGACGCGGTCGCGGAAACTGGCGCATCGGGCTTGGCCGATTGTGTGGCTGCCGGAGAGGGCGGTCATCTCGGCGGCGTTAAGGCCTTTGGCGGAGAACATGGAGATCAAAGTTGAAAGGGTGGAAGTTGGCATAGGGATTTGGGCGTTGGCGGAGCTTAGGCTTGCGGTTCTTGCGTCTCTTCGGCCCAATTGCACGGTCCATGTTGGCCCTCCTAGCTGCGTAAATACGATGTTATAAATATATATTTAAATTTGTATAAAATTAATTTAATAAAAAAAATATATTTTGTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E543569" ref_strand="-" ref_description="SGN-E543569 [TUS-65-H7]">
      <seq>ctgagatccgccattaaacaattcctgatccgattgaagcaatccacgccgagcctctaagttttgataatatttattatcgaattggctcggcgtctggatatctaacggggctaaattactgtctccgccagatgcagggcatgtggccccgagtgtggcggcgaattctgagttgatgttggtggcgttgttgacgcggtcgcggaaactggcgcatcgggcttggccgattgtgtggctgccggagagggcggtcatctcggcggcgttaaggcctttggcggagaacatggagatcaaagttgaaagggtggaagttggcatagggatttgggcgttggcggagcttaggcttgcggttcttgcgtctcttcggcccaattgcacggtccatgttggccctcctagctgcgtaaatacgatgttataaatatatatttaaatttgtataaaattaatttaataaaaanaaatatattttgttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44142" stop="45230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44442" g_stop="44924" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="499"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E543569" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543569" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44442" e_stop="44924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGATCCGCCATTAAACAATTCCTGATCCGATTGAAGCAATCCACGCCGAGCCTCTAAGTTTTGATAATATTTATTATCGAATTGGCTCGGCGTCTGGATATCTAACGGGGCTAAATTACTGTCTCCGCCAGATGCAGGGCATGTGGCCCCGAGTGTGGCGGCGAATTCTGAGTTGATGTTGGTGGCGTTGTTGACGCGGTCGCGGAAACTGGCGCATCGGGCTTGGCCGATTGTGTGGCTGCCGGAGAGGGCGGTCATCTCGGCGGCGTTAAGGCCTTTGGCGGAGAACATGGAGATCAAAGTTGAAAGGGTGGAAGTTGGCATAGGGATTTGGGCGTTGGCGGAGCTTAGGCTTGCGGTTCTTGCGTCTCTTCGGCCCAATTGCACGGTCCATGTTGGCCCTCCTAGCTGCGTAAATACGATGTTATAAATATATATTTAAATTTGTATAAAATTAATTTAATAAAAA-AAATATATTTT</genome_strand>
        <mrna_strand>CTGAGATCCGCCATTAAACAATTCCTGATCCGATTGAAGCAATCCACGCCGAGCCTCTAAGTTTTGATAATATTTATTATCGAATTGGCTCGGCGTCTGGATATCTAACGGGGCTAAATTACTGTCTCCGCCAGATGCAGGGCATGTGGCCCCGAGTGTGGCGGCGAATTCTGAGTTGATGTTGGTGGCGTTGTTGACGCGGTCGCGGAAACTGGCGCATCGGGCTTGGCCGATTGTGTGGCTGCCGGAGAGGGCGGTCATCTCGGCGGCGTTAAGGCCTTTGGCGGAGAACATGGAGATCAAAGTTGAAAGGGTGGAAGTTGGCATAGGGATTTGGGCGTTGGCGGAGCTTAGGCTTGCGGTTCTTGCGTCTCTTCGGCCCAATTGCACGGTCCATGTTGGCCCTCCTAGCTGCGTAAATACGATGTTATAAATATATATTTAAATTTGTATAAAATTAATTTAATAAAAANAAATATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E304997" ref_strand="+" ref_description="SGN-E304997 [cLEX-10-P16]">
      <seq>tgagatccgccattaaacaattcctgatccgattgaagcaatccacgccgagcctctaagttttgataatatttattatcgaattggctcggcgtctggatatctaacggggctaaattactgtctccgccagatgcagggcatgtggccccgagtgtggcggcgaattctgagttgatgttggtggcgttgttgacgcggtcgcggaaactggcgcatcgggcttggccgattgtgtggctgccggagagggcggtcatctcggcggcgttaaggcctttggcggagaacatggagatcaaagttgaaagggtggaagttggcatagggatttgggcgttggcggagcttangcttgcggttcttgcgtctcttcggcccaattgcacggtccatgttggccctcctagctgcgtaaatacgatgttataaatatatatttaaatttgtataaaattaatttaataaaaaaaatatattttgtttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44143" stop="45230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44443" g_stop="44931" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E304997" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44443" e_stop="44931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCCGCCATTAAACAATTCCTGATCCGATTGAAGCAATCCACGCCGAGCCTCTAAGTTTTGATAATATTTATTATCGAATTGGCTCGGCGTCTGGATATCTAACGGGGCTAAATTACTGTCTCCGCCAGATGCAGGGCATGTGGCCCCGAGTGTGGCGGCGAATTCTGAGTTGATGTTGGTGGCGTTGTTGACGCGGTCGCGGAAACTGGCGCATCGGGCTTGGCCGATTGTGTGGCTGCCGGAGAGGGCGGTCATCTCGGCGGCGTTAAGGCCTTTGGCGGAGAACATGGAGATCAAAGTTGAAAGGGTGGAAGTTGGCATAGGGATTTGGGCGTTGGCGGAGCTTAGGCTTGCGGTTCTTGCGTCTCTTCGGCCCAATTGCACGGTCCATGTTGGCCCTCCTAGCTGCGTAAATACGATGTTATAAATATATATTTAAATTTGTATAAAATTAATTTAATAAAAAAAATATATTTTGTTTGAC</genome_strand>
        <mrna_strand>TGAGATCCGCCATTAAACAATTCCTGATCCGATTGAAGCAATCCACGCCGAGCCTCTAAGTTTTGATAATATTTATTATCGAATTGGCTCGGCGTCTGGATATCTAACGGGGCTAAATTACTGTCTCCGCCAGATGCAGGGCATGTGGCCCCGAGTGTGGCGGCGAATTCTGAGTTGATGTTGGTGGCGTTGTTGACGCGGTCGCGGAAACTGGCGCATCGGGCTTGGCCGATTGTGTGGCTGCCGGAGAGGGCGGTCATCTCGGCGGCGTTAAGGCCTTTGGCGGAGAACATGGAGATCAAAGTTGAAAGGGTGGAAGTTGGCATAGGGATTTGGGCGTTGGCGGAGCTTANGCTTGCGGTTCTTGCGTCTCTTCGGCCCAATTGCACGGTCCATGTTGGCCCTCCTAGCTGCGTAAATACGATGTTATAAATATATATTTAAATTTGTATAAAATTAATTTAATAAAAAAAATATATTTTGTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E729300" ref_strand="+" ref_description="SGN-E729300 [LA20CE07]">
      <seq>ggagtacttcaagatggtaggaaggttgcaattaagctgatggatcaggctggaaaacagggggaggaagaattcaaagtggaggtggagttgctatgccgcttgcgctcaccgtatttgctgtcattgattggctattgttcagaaagcagccataaattgcttgtatatgagttcatggcaaatggtggtttacaggagcacttgtatccaatcaaaggttccaataatttttgtccaaagttggactggaagacccggttaagaatagcgttggaggctgctaaaggtttggaatatctacatgagcatgtcaatcccccagttatacatagagacctcaaaagtagcaatattcttttggacaaaaatttccatgccaaagtttctgacttcggattggccaagcttggatctgataaagctggtggacatgtctctacccgagttttgggaacacagggatatgttgctccagaatatgcattaacaggacacttgaccaccaaatcagatgtttacagttatggggttgtcctcctagagttgttgacagggagagttccagttgatatgaagagatctcctggcgaaggcgttcttgtttcttgggcattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="53066" stop="50924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52766" g_stop="52683" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52682" i_stop="52359" i_length="324">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52358" g_stop="52223" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="220" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52222" i_stop="51767" i_length="456">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51766" g_stop="51508" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="479" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51507" i_stop="51360" i_length="148">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51359" g_stop="51227" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="612" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51226" i_stop="51104" i_length="123">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.567" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51103" g_stop="51097" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="619" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E729300" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52766" e_stop="52683"/>
          <exon e_start="52358" e_stop="52223"/>
          <exon e_start="51766" e_stop="51508"/>
          <exon e_start="51359" e_stop="51227"/>
          <exon e_start="51103" e_stop="51097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTACTTCAAGATGGTAGGAAGGTTGCAATTAAGCTGATGGATCAGGCTGGAAAACAGGGGGAGGAAGAATTCAAAGTGGAGGTAATTGCAAATATAAATTCAATATAATCCATAAGAAGATGTGATCTTGTCTCGTCATTAGCAAGAAAACAAATACACAAATGTCCTGATCTTCGAAAGATATCACGTTAGGATGTAATCTAATATAAAGCAAATTGTCTTTCCAATGCTATATGAGTTTCTAAGATTTTTCGACCGTGTGTCAAACAGTTAAAAAGTACAGAGTTTCAGTTGAACCTTTTTTAAAACTCCAAGAAGAGTTAAAGGACTCTGATTATTCTTTTACATGTTGTTTTATTGCCTCTCTTTTACTTTGGTGAAATGATTGCTGTTATCAAATATCAGGTGGAGTTGCTATGCCGCTTGCGCTCACCGTATTTGCTGTCATTGATTGGCTATTGTTCAGAAAGCAGCCATAAATTGCTTGTATATGAGTTCATGGCAAATGGTGGTTTACAGGAGCACTTGTATCCAATCAAAGGTCTGTTTGGTTTTCAGTTGTATATGGTTTTGGGCATTTTTGGAATTTAGTACCAGCCTGCCTTCTCTGCTTGAAAAGCCAATGTGGAAAAAATACTTCATAGATATGGCAGTGATGAATGGATATCCTCATCAAGTGACATTCTGAGACATATCAAAGTTTGTCATATGCATAAAATGAGTGATTTTTTCTGGTGTCCTCGTCAGTAATTGAGATTATTCTCTGAAGTGTAGAAAACCACACACTAAATTATATGTTATGAAACCAACTCCAAAGGGAACAAAGGAAGTCTTTTCCTGAAATTCTACTGGCATGTGAAATTCGTGTTTACTGTGTACTGTTCCTAGTTGTGCAAAATGGCCTGTTCCTATTCTTACACCTTCTTTTCACATTGTTTCGAGTTTTTCTTTTCAAGTCATCAAGTTATTAATGAAAGTGTTGCACTTCAATCTGTAGGTTCCAATAATTTTTGTCCAAAGTTGGACTGGAAGACCCGGTTAAGAATAGCGTTGGAGGCTGCTAAAGGTTTGGAATATCTACATGAGCATGTCAATCCCCCAGTTATACATAGAGACCTCAAAAGTAGCAATATTCTTTTGGACAAAAATTTCCATGCCAAAGTTTCTGACTTCGGATTGGCCAAGCTTGGATCTGATAAAGCTGGTGGACATGTCTCTACCCGAGTTTTGGGAACACAGGGATATGTTGCTCCAGAGTAAGAACCCTTCATTTAGCTGAAATATGTTAGATTATAGCAGTTCCATGCGTAATCGTTGAGGTGATGTCTTCTCTTAACTTACCAGTACCTTTTTATGTGAGATTTTAACGTATCAATGTCGATTTCTTCCATTGAACCATTGCAGATATGCATTAACAGGACACTTGACCACCAAATCAGATGTTTACAGTTATGGGGTTGTCCTCCTAGAGTTGTTGACAGGGAGAGTTCCAGTTGATATGAAGAGATCTCCTGGCGAAGGCGTTCTTGTTTCTTGGGTAGGTTCTCGTAAATGTTGTAAGCATACTATCCTACATTTTCAGACATTCTTCTGTCTAATGTCCCATAGGCCGCGCTAGTGAATTGAAACGTTTCTCCAGCTGACCTCTTCCTATTCTTAGGCATTGC</genome_strand>
        <mrna_strand>GGAGTACTTCAAGATGGTAGGAAGGTTGCAATTAAGCTGATGGATCAGGCTGGAAAACAGGGGGAGGAAGAATTCAAAGTGGAG....................................................................................................................................................................................................................................................................................................................................GTGGAGTTGCTATGCCGCTTGCGCTCACCGTATTTGCTGTCATTGATTGGCTATTGTTCAGAAAGCAGCCATAAATTGCTTGTATATGAGTTCATGGCAAATGGTGGTTTACAGGAGCACTTGTATCCAATCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAATAATTTTTGTCCAAAGTTGGACTGGAAGACCCGGTTAAGAATAGCGTTGGAGGCTGCTAAAGGTTTGGAATATCTACATGAGCATGTCAATCCCCCAGTTATACATAGAGACCTCAAAAGTAGCAATATTCTTTTGGACAAAAATTTCCATGCCAAAGTTTCTGACTTCGGATTGGCCAAGCTTGGATCTGATAAAGCTGGTGGACATGTCTCTACCCGAGTTTTGGGAACACAGGGATATGTTGCTCCAGA....................................................................................................................................................ATATGCATTAACAGGACACTTGACCACCAAATCAGATGTTTACAGTTATGGGGTTGTCCTCCTAGAGTTGTTGACAGGGAGAGTTCCAGTTGATATGAAGAGATCTCCTGGCGAAGGCGTTCTTGTTTCTTGG...........................................................................................................................GCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E326954" ref_strand="+" ref_description="SGN-E326954 [cTOC-18-J16]">
      <seq>aaaaaagaagactgttttgtgactcagtcccatttagtcttgtcaacatcacaggactagtattgtacttcttaaacttctctctttaatggcttctctataacccctctttgggtgttttcccttttctttgctagcaccatggaagcagaaaatgatgagtaccataagaaagaaagggcaattgcagttactatactggtctttgcttctcttgccattgcttctttgtttgtagcctttagttactattgttatatccgtaataaagttgccaagcgtctcaagaaccgcacttatacggagagtgcttgtgaggacaagggcaatagtttctccaatctggaagttattgcagagaagggacttcaggttttcacatttaagcagctgcattcagcaactggtggatttggaaaatctaatgtgattggaaatggtgctttcgggtcagtatatagaggagtacttcaagatggtaggaaggttgcaattaagctgatggatcaggctggaaaacagggggaggaagaattcaaagtggaggtggagttgctatgccgcttgcgctcaccgtatttgctgtcattgattggctattgttcagaaagcagccataaattgcttgtatatgagttcatggcaaatggtggtttacaggagcacttgtatccaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="54822" stop="51927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54522" g_stop="54225" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54224" i_stop="52931" i_length="1294">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52930" g_stop="52683" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="546" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52682" i_stop="52359" i_length="324">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52358" g_stop="52227" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="678" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E326954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54522" e_stop="54225"/>
          <exon e_start="52930" e_stop="52683"/>
          <exon e_start="52358" e_stop="52227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAGACTGTTTTGTGACTCAGTCCCATTTAGTCTTGTCAACATCACAGGACTAGTATTGTACTTCTTAAACTTCTCTCTTTAATGGCTTCTCTATAACCCCTCTTTGGGTGTTTTCCCTTTTCTTTGCTAGCACCATGGAAGCAGAAAATGATGAGTACCATAAGAAAGAAAGGGCAATTGCAGTTACTATACTGGTCTTTGCTTCTCTTGCCATTGCTTCTTTGTTTGTAGCCTNTAGTTACTATTGTTATATCCGTAATAAAGTTGCCAAGCGTCTCAAGAACCGCACTTGTAAGTATTGTTTTTATAATTTTTGTAAGGTGGTTACCAGTGTTTTCAAGAATTAGGTACATTTTTTGAGTTGTGGCTTTGGGGGGTTCTTGAATATTGCAGAAAGTTTTAATCTTTATGAAGATATAGGTTGAAATGGAAGGTGGGGTGGGGGGTGGGGGTCAGTTTTTTTCCCTTTTAGGAAAAGAAAAGAAGAAACAGACAATGTCATTGTGACTATTGGAAAAGATTGCATTTCATATTTTCTTGAGTTGTGGCTTTTGTGTTCTTGAATGTATTGCAGAAAGTTTTGATCTTTTGGAAGATAAGAGTTGAAATGGGAGGGTGGGGTGGGGGAGGGTTCAGTTTTTCCACTTTTAGGAAAAGAAAAGAAGAAACACACATTGTCATTGTGACTAATGGAAAGGATTGCATTACATATTCTTGAGTTGTGGTTTTTGTGTTCTTGAAAGTATTGCAGAAAGTTTTGATCTTTAGGAAGATAAGGGTCAAGAGGGGATTGCACTGAGCTAAGGGAGAAAAGAAGAAAGGTAAGGGTAGATGGGATGGAGGGTTTGGGGGAGGGGGTCCATTTTTTTTAGGGAAAGAAAAGAAGAAACTTGCATTTTCACTATGACAAATGGAAAAGCTGTAATGTTGGTTACAGTATTGTTGAAATTCTGAGTGAAATGCCTTAATGTCTGGAAGCAGATTAAATTTCCTCAACTTAATGGAGAAGATTTCTCTAACTGACCATGACTAGTTTGGAATTGAGCCTTAATTGTAGTTGATTAATTAGCACTGATTGTCAAACTTGTTTTACTGAAAATATGCTTCCTAATGCTCAAATTTACACCATGCTCATTGTGCTTTAGTAGTTGTTAGTAGAATTAGCACTAATCCTCCGGCTTGTTGACTGAAAAATGCTTCCTAATGCACAAATTATTACCCTGCTCTCTGTGCTTTAGTAGTTGTAAGTTAATGATTAGCACTAATCTTCCTGCTTATTATACTGAGAAAATGCTTCCTAATGCACAAATTTACACCCTGCTCACTATGCTTTAGTAGTTGTTAATAAAGTTAGCACTAATCTTCCGTCTTGTTATACTGAGGAAATGTTTCTTTATGCACAAGTTTTTCACCCTCGACACTGTGCTCTATTAGTTGTTTATAAAACTAGCTCAAACTGTTTGGCTTGTGCTGTATAGGAAGTGCTTCCTAAGGCACAATTTTACACCTTCACATTGTGTTTTTCTGTGTCAGTTCATGTTTTGGGAAAGCTTAAGTCTTGATACATTTTTGTTACTCCATCCAGATACGGAGAGTGCTTGTGAGGACAAGGGCAATAGTTTCTCCAATCTGGAAGTTATTGCAGAGAAGGGACTTCAGGTTTTCACATTTAAGCAGCTGCATTCAGCAACTGGTGGATTTGGAAAATCTAATGTGATTGGAAATGGTGCTTTCGGGTCAGTATATAGAGGAGTACTTCAAGATGGTAGGAAGGTTGCAATTAAGCTGATGGATCAGGCTGGAAAACAGGGGGAGGAAGAATTCAAAGTGGAGGTAATTGCAAATATAAATTCAATATAATCCATAAGAAGATGTGATCTTGTCTCGTCATTAGCAAGAAAACAAATACACAAATGTCCTGATCTTCGAAAGATATCACGTTAGGATGTAATCTAATATAAAGCAAATTGTCTTTCCAATGCTATATGAGTTTCTAAGATTTTTCGACCGTGTGTCAAACAGTTAAAAAGTACAGAGTTTCAGTTGAACCTTTTTTAAAACTCCAAGAAGAGTTAAAGGACTCTGATTATTCTTTTACATGTTGTTTTATTGCCTCTCTTTTACTTTGGTGAAATGATTGCTGTTATCAAATATCAGGTGGAGTTGCTATGCCGCTTGCGCTCACCGTATTTGCTGTCATTGATTGGCTATTGTTCAGAAAGCAGCCATAAATTGCTTGTATATGAGTTCATGGCAAATGGTGGTTTACAGGAGCACTTGTATCCAATC</genome_strand>
        <mrna_strand>AAAAAAGAAGACTGTTTTGTGACTCAGTCCCATTTAGTCTTGTCAACATCACAGGACTAGTATTGTACTTCTTAAACTTCTCTCTTTAATGGCTTCTCTATAACCCCTCTTTGGGTGTTTTCCCTTTTCTTTGCTAGCACCATGGAAGCAGAAAATGATGAGTACCATAAGAAAGAAAGGGCAATTGCAGTTACTATACTGGTCTTTGCTTCTCTTGCCATTGCTTCTTTGTTTGTAGCCTTTAGTTACTATTGTTATATCCGTAATAAAGTTGCCAAGCGTCTCAAGAACCGCACTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGAGAGTGCTTGTGAGGACAAGGGCAATAGTTTCTCCAATCTGGAAGTTATTGCAGAGAAGGGACTTCAGGTTTTCACATTTAAGCAGCTGCATTCAGCAACTGGTGGATTTGGAAAATCTAATGTGATTGGAAATGGTGCTTTCGGGTCAGTATATAGAGGAGTACTTCAAGATGGTAGGAAGGTTGCAATTAAGCTGATGGATCAGGCTGGAAAACAGGGGGAGGAAGAATTCAAAGTGGAG....................................................................................................................................................................................................................................................................................................................................GTGGAGTTGCTATGCCGCTTGCGCTCACCGTATTTGCTGTCATTGATTGGCTATTGTTCAGAAAGCAGCCATAAATTGCTTGTATATGAGTTCATGGCAAATGGTGGTTTACAGGAGCACTTGTATCCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E327017" ref_strand="+" ref_description="SGN-E327017 [cTOC-18-I16]">
      <seq>aaaaaagaagactgttttgtgactcagtcccatttagtcttgtcaacatcacaggactagtattgtacttcttaaacttctctctttaatggcttctctataacccctctttgggtgttttcccttttctttgctagcaccatggaagcagaaaatgatgagtaccataagaaagaaagggcaattgcagttactatactggtctttgcttctcttgccattgcttctttgtttgtagcctttagttactattgttatatccgtaataaagttgccaagcgtctcaagaaccgcacttatacggagagtgcttgtgaggacaagggcaatagtttctccaatctggaagttattgcagagaagggacttcaggttttcacatttaagcagctgcattcagcaactggtggatttggaaaatctaatgtgattggaaatggtgctttcgggtcagtatatagaggagtacttcaagatggtaggaaggttgcaattaagctgatggatcaggctggaaaacagggggaggaagaattcaaagtggaggtggagttgctatgccgcttgcgctcaccgtatttgctgtcattgattggctattgntcagaaagcagccataaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="54822" stop="51980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54522" g_stop="54225" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54224" i_stop="52931" i_length="1294">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52930" g_stop="52683" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="546" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52682" i_stop="52359" i_length="324">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52358" g_stop="52280" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="625" r_length="79" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E327017" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54522" e_stop="54225"/>
          <exon e_start="52930" e_stop="52683"/>
          <exon e_start="52358" e_stop="52280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAGACTGTTTTGTGACTCAGTCCCATTTAGTCTTGTCAACATCACAGGACTAGTATTGTACTTCTTAAACTTCTCTCTTTAATGGCTTCTCTATAACCCCTCTTTGGGTGTTTTCCCTTTTCTTTGCTAGCACCATGGAAGCAGAAAATGATGAGTACCATAAGAAAGAAAGGGCAATTGCAGTTACTATACTGGTCTTTGCTTCTCTTGCCATTGCTTCTTTGTTTGTAGCCTNTAGTTACTATTGTTATATCCGTAATAAAGTTGCCAAGCGTCTCAAGAACCGCACTTGTAAGTATTGTTTTTATAATTTTTGTAAGGTGGTTACCAGTGTTTTCAAGAATTAGGTACATTTTTTGAGTTGTGGCTTTGGGGGGTTCTTGAATATTGCAGAAAGTTTTAATCTTTATGAAGATATAGGTTGAAATGGAAGGTGGGGTGGGGGGTGGGGGTCAGTTTTTTTCCCTTTTAGGAAAAGAAAAGAAGAAACAGACAATGTCATTGTGACTATTGGAAAAGATTGCATTTCATATTTTCTTGAGTTGTGGCTTTTGTGTTCTTGAATGTATTGCAGAAAGTTTTGATCTTTTGGAAGATAAGAGTTGAAATGGGAGGGTGGGGTGGGGGAGGGTTCAGTTTTTCCACTTTTAGGAAAAGAAAAGAAGAAACACACATTGTCATTGTGACTAATGGAAAGGATTGCATTACATATTCTTGAGTTGTGGTTTTTGTGTTCTTGAAAGTATTGCAGAAAGTTTTGATCTTTAGGAAGATAAGGGTCAAGAGGGGATTGCACTGAGCTAAGGGAGAAAAGAAGAAAGGTAAGGGTAGATGGGATGGAGGGTTTGGGGGAGGGGGTCCATTTTTTTTAGGGAAAGAAAAGAAGAAACTTGCATTTTCACTATGACAAATGGAAAAGCTGTAATGTTGGTTACAGTATTGTTGAAATTCTGAGTGAAATGCCTTAATGTCTGGAAGCAGATTAAATTTCCTCAACTTAATGGAGAAGATTTCTCTAACTGACCATGACTAGTTTGGAATTGAGCCTTAATTGTAGTTGATTAATTAGCACTGATTGTCAAACTTGTTTTACTGAAAATATGCTTCCTAATGCTCAAATTTACACCATGCTCATTGTGCTTTAGTAGTTGTTAGTAGAATTAGCACTAATCCTCCGGCTTGTTGACTGAAAAATGCTTCCTAATGCACAAATTATTACCCTGCTCTCTGTGCTTTAGTAGTTGTAAGTTAATGATTAGCACTAATCTTCCTGCTTATTATACTGAGAAAATGCTTCCTAATGCACAAATTTACACCCTGCTCACTATGCTTTAGTAGTTGTTAATAAAGTTAGCACTAATCTTCCGTCTTGTTATACTGAGGAAATGTTTCTTTATGCACAAGTTTTTCACCCTCGACACTGTGCTCTATTAGTTGTTTATAAAACTAGCTCAAACTGTTTGGCTTGTGCTGTATAGGAAGTGCTTCCTAAGGCACAATTTTACACCTTCACATTGTGTTTTTCTGTGTCAGTTCATGTTTTGGGAAAGCTTAAGTCTTGATACATTTTTGTTACTCCATCCAGATACGGAGAGTGCTTGTGAGGACAAGGGCAATAGTTTCTCCAATCTGGAAGTTATTGCAGAGAAGGGACTTCAGGTTTTCACATTTAAGCAGCTGCATTCAGCAACTGGTGGATTTGGAAAATCTAATGTGATTGGAAATGGTGCTTTCGGGTCAGTATATAGAGGAGTACTTCAAGATGGTAGGAAGGTTGCAATTAAGCTGATGGATCAGGCTGGAAAACAGGGGGAGGAAGAATTCAAAGTGGAGGTAATTGCAAATATAAATTCAATATAATCCATAAGAAGATGTGATCTTGTCTCGTCATTAGCAAGAAAACAAATACACAAATGTCCTGATCTTCGAAAGATATCACGTTAGGATGTAATCTAATATAAAGCAAATTGTCTTTCCAATGCTATATGAGTTTCTAAGATTTTTCGACCGTGTGTCAAACAGTTAAAAAGTACAGAGTTTCAGTTGAACCTTTTTTAAAACTCCAAGAAGAGTTAAAGGACTCTGATTATTCTTTTACATGTTGTTTTATTGCCTCTCTTTTACTTTGGTGAAATGATTGCTGTTATCAAATATCAGGTGGAGTTGCTATGCCGCTTGCGCTCACCGTATTTGCTGTCATTGATTGGCTATTGTTCAGAAAGCAGCCATAAATTGC</genome_strand>
        <mrna_strand>AAAAAAGAAGACTGTTTTGTGACTCAGTCCCATTTAGTCTTGTCAACATCACAGGACTAGTATTGTACTTCTTAAACTTCTCTCTTTAATGGCTTCTCTATAACCCCTCTTTGGGTGTTTTCCCTTTTCTTTGCTAGCACCATGGAAGCAGAAAATGATGAGTACCATAAGAAAGAAAGGGCAATTGCAGTTACTATACTGGTCTTTGCTTCTCTTGCCATTGCTTCTTTGTTTGTAGCCTTTAGTTACTATTGTTATATCCGTAATAAAGTTGCCAAGCGTCTCAAGAACCGCACTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGAGAGTGCTTGTGAGGACAAGGGCAATAGTTTCTCCAATCTGGAAGTTATTGCAGAGAAGGGACTTCAGGTTTTCACATTTAAGCAGCTGCATTCAGCAACTGGTGGATTTGGAAAATCTAATGTGATTGGAAATGGTGCTTTCGGGTCAGTATATAGAGGAGTACTTCAAGATGGTAGGAAGGTTGCAATTAAGCTGATGGATCAGGCTGGAAAACAGGGGGAGGAAGAATTCAAAGTGGAG....................................................................................................................................................................................................................................................................................................................................GTGGAGTTGCTATGCCGCTTGCGCTCACCGTATTTGCTGTCATTGATTGGCTATTGNTCAGAAAGCAGCCATAAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E687820" ref_strand="+" ref_description="SGN-E687820 [T3_tus_81_D04]">
      <seq>cccttaaaaaagaagactgttttgtgactcagtcccatttagccctgtaacatcacaggactagtattgtacttcttaaacttctctctttaatggcttctctataacccctcttcccgtgatttcccttttctttgctagcaccatggaagcagaaaatgatgagtaccataagaaagaaagggcaattgcagttactatactggtctttgcttctcttgccattgcttctttgtttgtagcctttagttactattgttatatccgtaataaagttgccaagcgtctcaagaaccgcacttatacggagagtgcttgtgaggacaagggcaatagtttctccaatctggaagttattgcagagaagggacttcaggttttcacatttaagcagctgcattcagcaactggtggatttggaaaatctaatgtgattggaaatggtgctttcgggtcagtatatagaggagtacttcaagatggtaggaaggttgcaaattaagctgatggatcaggctggaaaacagggggaggaagaattcaaagtggaggtggagttgctatgccgcttgcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="54822" stop="52035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54527" g_stop="54225" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54224" i_stop="52931" i_length="1294">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52930" g_stop="52683" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="551" r_length="249" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52682" i_stop="52359" i_length="324">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52358" g_stop="52335" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="575" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E687820" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54527" e_stop="54225"/>
          <exon e_start="52930" e_stop="52683"/>
          <exon e_start="52358" e_stop="52335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAAAAAGAAGACTGTTTTGTGACTCAGTCCCATTTAGTCTTGTCAACATCACAGGACTAGTATTGTACTTCTTAAACTTCTCTCTTTAATGGCTTCTCTATAACCCCTCTTTGGGTGTTTTCCCTTTTCTTTGCTAGCACCATGGAAGCAGAAAATGATGAGTACCATAAGAAAGAAAGGGCAATTGCAGTTACTATACTGGTCTTTGCTTCTCTTGCCATTGCTTCTTTGTTTGTAGCCTNTAGTTACTATTGTTATATCCGTAATAAAGTTGCCAAGCGTCTCAAGAACCGCACTTGTAAGTATTGTTTTTATAATTTTTGTAAGGTGGTTACCAGTGTTTTCAAGAATTAGGTACATTTTTTGAGTTGTGGCTTTGGGGGGTTCTTGAATATTGCAGAAAGTTTTAATCTTTATGAAGATATAGGTTGAAATGGAAGGTGGGGTGGGGGGTGGGGGTCAGTTTTTTTCCCTTTTAGGAAAAGAAAAGAAGAAACAGACAATGTCATTGTGACTATTGGAAAAGATTGCATTTCATATTTTCTTGAGTTGTGGCTTTTGTGTTCTTGAATGTATTGCAGAAAGTTTTGATCTTTTGGAAGATAAGAGTTGAAATGGGAGGGTGGGGTGGGGGAGGGTTCAGTTTTTCCACTTTTAGGAAAAGAAAAGAAGAAACACACATTGTCATTGTGACTAATGGAAAGGATTGCATTACATATTCTTGAGTTGTGGTTTTTGTGTTCTTGAAAGTATTGCAGAAAGTTTTGATCTTTAGGAAGATAAGGGTCAAGAGGGGATTGCACTGAGCTAAGGGAGAAAAGAAGAAAGGTAAGGGTAGATGGGATGGAGGGTTTGGGGGAGGGGGTCCATTTTTTTTAGGGAAAGAAAAGAAGAAACTTGCATTTTCACTATGACAAATGGAAAAGCTGTAATGTTGGTTACAGTATTGTTGAAATTCTGAGTGAAATGCCTTAATGTCTGGAAGCAGATTAAATTTCCTCAACTTAATGGAGAAGATTTCTCTAACTGACCATGACTAGTTTGGAATTGAGCCTTAATTGTAGTTGATTAATTAGCACTGATTGTCAAACTTGTTTTACTGAAAATATGCTTCCTAATGCTCAAATTTACACCATGCTCATTGTGCTTTAGTAGTTGTTAGTAGAATTAGCACTAATCCTCCGGCTTGTTGACTGAAAAATGCTTCCTAATGCACAAATTATTACCCTGCTCTCTGTGCTTTAGTAGTTGTAAGTTAATGATTAGCACTAATCTTCCTGCTTATTATACTGAGAAAATGCTTCCTAATGCACAAATTTACACCCTGCTCACTATGCTTTAGTAGTTGTTAATAAAGTTAGCACTAATCTTCCGTCTTGTTATACTGAGGAAATGTTTCTTTATGCACAAGTTTTTCACCCTCGACACTGTGCTCTATTAGTTGTTTATAAAACTAGCTCAAACTGTTTGGCTTGTGCTGTATAGGAAGTGCTTCCTAAGGCACAATTTTACACCTTCACATTGTGTTTTTCTGTGTCAGTTCATGTTTTGGGAAAGCTTAAGTCTTGATACATTTTTGTTACTCCATCCAGATACGGAGAGTGCTTGTGAGGACAAGGGCAATAGTTTCTCCAATCTGGAAGTTATTGCAGAGAAGGGACTTCAGGTTTTCACATTTAAGCAGCTGCATTCAGCAACTGGTGGATTTGGAAAATCTAATGTGATTGGAAATGGTGCTTTCGGGTCAGTATATAGAGGAGTACTTCAAGATGGTAGGAAGGTTGC-AATTAAGCTGATGGATCAGGCTGGAAAACAGGGGGAGGAAGAATTCAAAGTGGAGGTAATTGCAAATATAAATTCAATATAATCCATAAGAAGATGTGATCTTGTCTCGTCATTAGCAAGAAAACAAATACACAAATGTCCTGATCTTCGAAAGATATCACGTTAGGATGTAATCTAATATAAAGCAAATTGTCTTTCCAATGCTATATGAGTTTCTAAGATTTTTCGACCGTGTGTCAAACAGTTAAAAAGTACAGAGTTTCAGTTGAACCTTTTTTAAAACTCCAAGAAGAGTTAAAGGACTCTGATTATTCTTTTACATGTTGTTTTATTGCCTCTCTTTTACTTTGGTGAAATGATTGCTGTTATCAAATATCAGGTGGAGTTGCTATGCCGCTTGCGC</genome_strand>
        <mrna_strand>CCCTTAAAAAAGAAGACTGTTTTGTGACTCAGTCCCATTTAGCCCTGT-AACATCACAGGACTAGTATTGTACTTCTTAAACTTCTCTCTTTAATGGCTTCTCTATAACCCCTCTTCCCGTGATTTCCCTTTTCTTTGCTAGCACCATGGAAGCAGAAAATGATGAGTACCATAAGAAAGAAAGGGCAATTGCAGTTACTATACTGGTCTTTGCTTCTCTTGCCATTGCTTCTTTGTTTGTAGCCTTTAGTTACTATTGTTATATCCGTAATAAAGTTGCCAAGCGTCTCAAGAACCGCACTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGAGAGTGCTTGTGAGGACAAGGGCAATAGTTTCTCCAATCTGGAAGTTATTGCAGAGAAGGGACTTCAGGTTTTCACATTTAAGCAGCTGCATTCAGCAACTGGTGGATTTGGAAAATCTAATGTGATTGGAAATGGTGCTTTCGGGTCAGTATATAGAGGAGTACTTCAAGATGGTAGGAAGGTTGCAAATTAAGCTGATGGATCAGGCTGGAAAACAGGGGGAGGAAGAATTCAAAGTGGAG....................................................................................................................................................................................................................................................................................................................................GTGGAGTTGCTATGCCGCTTGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E245111" ref_strand="+" ref_description="SGN-E245111 [cLEF-13-B14]">
      <seq>ttctgatagtggaaaaggcacaaaaatggggaaagaaccaacatggcatgaattactaggaagcaacaactgggaaggtcttcttgaaccattacacctcaatctccggcgactcatactccggtgcggcgacttttgtcaagcaacttacgacgccttcaacaatgacgaatactccatgtactgtggcagtagtcgttacggtaaaagttcacttttccacaaagtcatgttcaaatccgcctcagattaccaaatcgtcagcttcctttacaccactgctcgtgttggtgcccataaagccctcttcctccactctctttctcgtgaatcatgggatcgtgaatccaattggatcgggtttatagctataactaacgacgaaatcattgaacaactgggtcgtcgtgaaatctacatagcatttcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="57852" stop="58882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58152" g_stop="58582" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E245111" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58152" e_stop="58582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGATAGTGGAAAAGGCACAAAAATGGGGAAAGAACCAACATGGCATGAATTACTAGGAAGCAACAACTGGGAAGGTCTTCTTGAACCATTACACCTCAATCTCCGGCGACTCATACTCCGGTGCGGCGACTTTTGTCAAGCAACTTACGACGCCTTCAACAATGACGAATACTCCATGTACTGTGGCAGTAGTCGTTACGGTAAAAGTTCACTTTTCCACAAAGTCATGTTCAAATCCGCCTCAGATTACCAAATCGTCAGCTTCCTTTACGCCACTGCTCGTGTTGGTGCCCATAAAGCCCTCTTCCTCCACTCTCTTTCTCGTGAATCATGGGATCGTGAATCCAATTGGATCGGGTTTATAGCTATAACTAACGACGAAATCAGTGAACAACTGGGTCGTCGTGAAATCTACATAGCATTTCGTG</genome_strand>
        <mrna_strand>TTCTGATAGTGGAAAAGGCACAAAAATGGGGAAAGAACCAACATGGCATGAATTACTAGGAAGCAACAACTGGGAAGGTCTTCTTGAACCATTACACCTCAATCTCCGGCGACTCATACTCCGGTGCGGCGACTTTTGTCAAGCAACTTACGACGCCTTCAACAATGACGAATACTCCATGTACTGTGGCAGTAGTCGTTACGGTAAAAGTTCACTTTTCCACAAAGTCATGTTCAAATCCGCCTCAGATTACCAAATCGTCAGCTTCCTTTACACCACTGCTCGTGTTGGTGCCCATAAAGCCCTCTTCCTCCACTCTCTTTCTCGTGAATCATGGGATCGTGAATCCAATTGGATCGGGTTTATAGCTATAACTAACGACGAAATCATTGAACAACTGGGTCGTCGTGAAATCTACATAGCATTTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E457186" ref_strand="+" ref_description="SGN-E457186 [cPRO-1-P5]">
      <seq>atgaattactaggaagcaacaactgggaaggtcttcttgaaccattacacctcaatctccggcgactcatactccggtgcggcgacttctgtcaagcaacttacgacgccttcaacaatgatgaatactccatgtactgtggcagtagtcgatacggcaaaagttcatttttccacaaagtcatggtcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="57899" stop="58690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58199" g_stop="58390" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E457186" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>192</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58199" e_stop="58390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATTACTAGGAAGCAACAACTGGGAAGGTCTTCTTGAACCATTACACCTCAATCTCCGGCGACTCATACTCCGGTGCGGCGACTTTTGTCAAGCAACTTACGACGCCTTCAACAATGACGAATACTCCATGTACTGTGGCAGTAGTCGTTACGGTAAAAGTTCACTTTTCCACAAAGTCATGTTCAAAT</genome_strand>
        <mrna_strand>ATGAATTACTAGGAAGCAACAACTGGGAAGGTCTTCTTGAACCATTACACCTCAATCTCCGGCGACTCATACTCCGGTGCGGCGACTTCTGTCAAGCAACTTACGACGCCTTCAACAATGATGAATACTCCATGTACTGTGGCAGTAGTCGATACGGCAAAAGTTCATTTTTCCACAAAGTCATGGTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E727462" ref_strand="+" ref_description="SGN-E727462 [LA14DA11]">
      <seq>cgtgaagagtagcagaggagaagagagcacatggcctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgccgcagctcgtgcagcagcagcagcaacagcctgtgaatcgtgaactaggaggaggaggaggagctgcagtaaggaacgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccaccattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaatcgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggctggcttacattcataatgttccaaggatttgccatagagatgtgaaacctcaaaatcttttggttgatcctctgacccatcaagtcaagctgtgtgattttggaagtgcaaaagtcctggtaaatggtgaagcaaatatttcatacatttgctctcgctactacagagctccagaactcatatttggtgccacagagtatacaacatcaattgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63708" stop="66931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64007" g_stop="64222" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="309" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="369" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="642" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="717" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66008" g_stop="66064" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="774" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66533" g_stop="66631" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="873" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E727462" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64007" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65931"/>
          <exon e_start="66008" e_stop="66064"/>
          <exon e_start="66533" e_stop="66631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAGAGTAGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTATGTGAACAGGAGTCCACTTCATTCCTATTGTATGCAATCATCAATCTAAATCTCTATTGTATGTCATTTGAAGGTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTGGTATGTCTGTTTTTTCATAATTATTACGTCCTTATAAGTGCTGCATTATGCAAAGATTCTTTGAAGGTGCTTTAGTGTCATGATAGTAGTCTGTTTTTCATGTGCTTGACTGCACGAGTTGGTGCTGATTAAGGCACTGTCTGAAGACATTTCAGTTTTTAAACATTTGATACTTTTTTGACCCTTGGCTGTCAGGTTCTTAGATCTCTTGTTTGCAGAACAAGAGAAGTTTTTAACCAATACAATTAGGTTTTGACATGCGAGTTTGGATGTATTATTACTCTTGACAGTGGGAACGAGAGCAGAACTAGTTTCTAGCATTTCAGAATTCTCTGCTCAAAAACTGCAATACTTTTCCTTGCATTTTTTTTCTTTTTTTGCATGGCTCTTTCCTCGTGGAGAATTGTTTAGCGCATAACATAAACTGAAGCATTTCATTTTGATACTAATGAACTTTTCAATGCACAGGTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATT</genome_strand>
        <mrna_strand>CGTGAAGAGTAGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTG............................................................................GTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E697311" ref_strand="+" ref_description="SGN-E697311 [FA02AF12]">
      <seq>ccctatgagtagcagaggagaagagagcacatggcctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgccgcagctcgtgcagcagcagcagcaacagcctgtgaatcgtgaactaggaggaggaggaggagctgcagtaaggaacgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccaccattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaatcgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttagagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggctggcttaccttcataatgttccaaggatttgccataaagatgtgaaacctccaaatcttttgagtgatcctctgacccatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63711" stop="66329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64007" g_stop="64222" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="309" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="369" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="642" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="717" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76">
            <donor d_prob="0.892" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66008" g_stop="66029" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="739" r_length="22" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E697311" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64007" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65931"/>
          <exon e_start="66008" e_stop="66029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAGAGTAGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTATGTGAACAGGAGTCCACTTCATTCCTATTGTATGCAATCATCAATCTAAATCTCTATTGTATGTCATTTGAAGGTTGATCCTCTGACCCATCAAG</genome_strand>
        <mrna_strand>CCCTATGAGTAGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAGAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCTTACCTTCATAATGTTCCAAGGATTTGCCATAAAGATGTGAAACCTCCAAATCTTTTG............................................................................AGTGATCCTCTGACCCATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E486506" ref_strand="+" ref_description="SGN-E486506 [cSTE-22-I16]">
      <seq>tgagagtatagcagagtagaagagagcacatggcctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgcagctgcagcagcagcagcatgtgaatcgtgaacaaggaggaggaggagctacagtaaggaacgccgtcgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccactattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaaccgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacaactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggctggcttacattcataatgttccaagaatttgccatagagatgtgaaacctcaaaatcttttgggttgatccctctgacccatcagtcaagctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63709" stop="66236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64009" g_stop="64222" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="0.74"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="299" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="359" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="632" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="708" r_length="76" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76">
            <donor d_prob="0.892" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66008" g_stop="66038" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="739" r_length="31" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E486506" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64009" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65931"/>
          <exon e_start="66008" e_stop="66038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGA-AGAGTAGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTG-CAGTAA-G-GAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTT-GGTATGTGAACAGGAGTCCACTTCATTCCTATTGTATGCAATCATCAATCTAAATCTCTATTGTATGTCATTTGAAGGTTGAT-CCTCTGACCCATCAAGTCAAGCTGT</genome_strand>
        <mrna_strand>TGAGAGTATAGCAGAGTAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCA---GCCGCCGCAG--C-TGCAGCAGCAGCAG---CA---TGTGAATCGTGAACAAGGAGGAGGAGGAGCTACAGTAAGGAACGCCGTCGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACTATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAACCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACAACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGAATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGG............................................................................GTTGATCCCTCTGACCCATC-AGTCAAGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E337321" ref_strand="+" ref_description="SGN-E337321 [cTOE-7-N4]">
      <seq>aagagtggcagaggagaagagagcacatggcctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgccgcagctcgtgcagcagcagcagcaacagcctgtgaatcgtgaactaggaggaggaggaggagctgcagtaaggaacgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccaccattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63711" stop="65829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64011" g_stop="64222" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="305" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="365" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65529" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="387" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E337321" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64011" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTAGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAG</genome_strand>
        <mrna_strand>AAGAGTGGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E592899" ref_strand="+" ref_description="SGN-E592899 [36117]">
      <seq>gtatagcagagtagaagagagcacatggcctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgcagctgcagcagcagcagcagcagcatgtgaatcgtgaacaaggaggtggaggagctgcagtaaggaacgccgtcgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccactattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaaccgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcattgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggctggcctacattcataatgttccaagaatgtgccatagagatgtgaaacctcaaaatctttggttgatctctgacccatcaagtcaggctatgtgattttggaagtgcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63716" stop="66357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64013" g_stop="64222" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="0.74"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="300" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="360" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="633" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="707" r_length="74" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76">
            <donor d_prob="0.892" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66008" g_stop="66058" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="757" r_length="50" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E592899" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64013" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65931"/>
          <exon e_start="66008" e_stop="66058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTG-CAGTAA-G-GAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTATGTGAACAGGAGTCCACTTCATTCCTATTGTATGCAATCATCAATCTAAATCTCTATTGTATGTCATTTGAAGGTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAA</genome_strand>
        <mrna_strand>GTATAGCAGAGTAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCA---GCCGCCGCAG--C-TGCAGCAGCAGCAGCAGCAGCATGTGAATCGTGAACAAGGAGGTGGAGGAGCTGCAGTAAGGAACGCCGTCGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACTATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAACCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCATTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCCTACATTCATAATGTTCCAAGAATGTGCCATAGAGATGTGAAACCTCAAAATC-TTTG............................................................................GTTGAT-CTCTGACCCATCAAGTCAGGCTATGTGATTTTGGAAGTGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E604202" ref_strand="+" ref_description="SGN-E604202 [74334]">
      <seq>gtatagcagagtagaagagagcacatggcctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgcagctgcagcagcagcagcagcagcatgtgaatcgtgaacaaggaggaggaggagctgcagtaaggaacaccgtcgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccactattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaaccgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggcttggttacattcataatgtttccaagaaatttggcatagagatgttgaaacctcaaaatcttttgcgtttgaatcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63716" stop="66240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64013" g_stop="64222" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="0.72"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="300" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="360" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="633" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="711" r_length="78" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E604202" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64013" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTG-CA-GTA-AGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATG-TTCCAAG-GATTTGCCATAGAGATG-TGAAACCTCAAAATCTTTTG</genome_strand>
        <mrna_strand>GTATAGCAGAGTAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCA---GCCGCCGCAG--C-TGCAGCAGCAGCAGCAGCAGCATGTGAATCGTGAACAAGGAGGAGGAGGAGCTGCAGTAAGGAACACCGTCGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACTATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAACCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTTGGTTACATTCATAATGTTTCCAAGAAATTTGGCATAGAGATGTTGAAACCTCAAAATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E344521" ref_strand="+" ref_description="SGN-E344521 [cTOF-14-F10]">
      <seq>gcagaggagaagagagcacatggcctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgccgcagctcgtgcagcagcagcagcaacagcctgtgaatcgtgaactaggaggaggaggaggagctgcagtaaggaacgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccaccattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaatcgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63718" stop="66078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64018" g_stop="64222" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="298" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="358" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65778" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="629" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E344521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64018" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATC</genome_strand>
        <mrna_strand>GCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E477826" ref_strand="+" ref_description="SGN-E477826 [cSTD-1-J24]">
      <seq>cagagtagaagagagcacatggcctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgcagctgcagcagcagcagcagcagcatgtgaatcgtgaacaaggaggaggaggagctgcagtaaggaacaccgtcgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccactattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaaccgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggctggcttacattcataatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63719" stop="66190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64019" g_stop="64222" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="0.72"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="294" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="354" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="627" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65890" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="661" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E477826" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64019" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTG-CA-GTA-AGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTC</genome_strand>
        <mrna_strand>CAGAGTAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCA---GCCGCCGCAG--C-TGCAGCAGCAGCAGCAGCAGCATGTGAATCGTGAACAAGGAGGAGGAGGAGCTGCAGTAAGGAACACCGTCGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACTATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAACCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCTTACATTCATAATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E452359" ref_strand="+" ref_description="SGN-E452359 [cSTS-16-F13]">
      <seq>gtagaagagagcacatggcctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgcagctgcagcagcagcagcagcagcatgtgaatcgtgaacaaggaggaggaggagctgcagtaaggaacaccgtcgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccactattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaaccgtgaactacaactgatgcgcttgatggatcacccaaatgtcatgactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggctggcttacattcataatggtccaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63725" stop="66200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64023" g_stop="64222" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="0.72"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="290" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="350" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="623" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65900" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="667" r_length="44" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E452359" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64023" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTG-CA-GTA-AGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTG</genome_strand>
        <mrna_strand>GTAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCA---GCCGCCGCAG--C-TGCAGCAGCAGCAGCAGCAGCATGTGAATCGTGAACAAGGAGGAGGAGGAGCTGCAGTAAGGAACACCGTCGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACTATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAACCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATGACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCTTACATTCATAATGGTCCAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E271722" ref_strand="+" ref_description="SGN-E271722 [cLEM-23-H4]">
      <seq>aagagagcacatggcctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgccgcagctcgtgcagcagcagcagcaacagcctgtgaatcgtgaactaggaggaggaggaggagctgcagtaaggaacgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccaccattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaatcgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattattgccctgaaagtttatacaaggttttaaagcactatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63727" stop="66029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64027" g_stop="64222" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="289" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="349" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65729" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="571" r_length="222" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E271722" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64027" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGC</genome_strand>
        <mrna_strand>AAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATTGCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E487857" ref_strand="+" ref_description="SGN-E487857 [cSTE-26-D24]">
      <seq>agagagcacatggcctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgcagctgcagcagcagcagcatgtgaatcgtgaacaaggaggaggaggagctacagtaaggaacgccgtcgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccactattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaaccgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacaactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggctggcttacattcataatgttccaagaatttgccatagagatgtgaaacctcaaaatcttttggttgatcctctgacccatcaagtcaagctatgtgattttggaagtgcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63728" stop="66359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64028" g_stop="64222" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="0.74"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="279" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="339" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="612" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="687" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76">
            <donor d_prob="0.892" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66008" g_stop="66059" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="739" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E487857" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64028" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65931"/>
          <exon e_start="66008" e_stop="66059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTG-CAGTAA-G-GAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTATGTGAACAGGAGTCCACTTCATTCCTATTGTATGCAATCATCAATCTAAATCTCTATTGTATGTCATTTGAAGGTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAG</genome_strand>
        <mrna_strand>AGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAG---CCGCCGCAG--C-TGCAGCAGCAGCAG---CA---TGTGAATCGTGAACAAGGAGGAGGAGGAGCTACAGTAAGGAACGCCGTCGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACTATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAACCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACAACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGAATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTG............................................................................GTTGATCCTCTGACCCATCAAGTCAAGCTATGTGATTTTGGAAGTGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E541755" ref_strand="+" ref_description="SGN-E541755 [TUS-62-L9]">
      <seq>cctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgccgcagctcgtgcagcagcagcagcaacagcctgtgaatcgtgaactaggaggaggaggaggagctgcagtaaggaacgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccaccattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaatcgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggctggcttacattcataatgttccaaggatttgccatagagatgtgaaacctcaaaatctttttggttgatcctctgacccatcaagtcaagctgtgtgattttggaagtgcaaagtcctggtaaatggtgaagcaaatatttcatacatttgctctcgctactacagagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63741" stop="66884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64041" g_stop="64222" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="275" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="335" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="608" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="684" r_length="76" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76">
            <donor d_prob="0.892" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66008" g_stop="66064" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="740" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66533" g_stop="66584" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="792" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E541755" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64041" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65931"/>
          <exon e_start="66008" e_stop="66064"/>
          <exon e_start="66533" e_stop="66584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATC-TTTTGGTATGTGAACAGGAGTCCACTTCATTCCTATTGTATGCAATCATCAATCTAAATCTCTATTGTATGTCATTTGAAGGTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTGGTATGTCTGTTTTTTCATAATTATTACGTCCTTATAAGTGCTGCATTATGCAAAGATTCTTTGAAGGTGCTTTAGTGTCATGATAGTAGTCTGTTTTTCATGTGCTTGACTGCACGAGTTGGTGCTGATTAAGGCACTGTCTGAAGACATTTCAGTTTTTAAACATTTGATACTTTTTTGACCCTTGGCTGTCAGGTTCTTAGATCTCTTGTTTGCAGAACAAGAGAAGTTTTTAACCAATACAATTAGGTTTTGACATGCGAGTTTGGATGTATTATTACTCTTGACAGTGGGAACGAGAGCAGAACTAGTTTCTAGCATTTCAGAATTCTCTGCTCAAAAACTGCAATACTTTTCCTTGCATTTTTTTTCTTTTTTTGCATGGCTCTTTCCTCGTGGAGAATTGTTTAGCGCATAACATAAACTGAAGCATTTCATTTTGATACTAATGAACTTTTCAATGCACAGGTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTC</genome_strand>
        <mrna_strand>CCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTTG............................................................................GTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGC-AAAGTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E555341" ref_strand="+" ref_description="SGN-E555341 [cTSC-1-O13]">
      <seq>ctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgccgcagctcgtgcagcagcagcagcaacagcctgtgaatcgtgaactaggaggaggaggaggagctgcagtaaggaacgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccaccattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaatcgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggctggcttacattcataatgttccaaggatttgccatagagatgtgaaacctcaaaatcttttggttgatcctctgacccatcaagtcaagctgtgtgattttggaagtgcaaaagtcctggtaaatggtgaagcaaatatttcatacatttgctctcgctactacagagctccagaactcatatttggtgccacagagtatacaacatctattgatatttggtcagcaggctgtgtccttgctgagcttcttctggggcagccgctctttcctggcgaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63742" stop="67096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64042" g_stop="64222" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="274" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="334" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="607" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="682" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66008" g_stop="66064" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="739" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66533" g_stop="66673" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="880" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="66674" i_stop="66774" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66775" g_stop="66796" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="881" r_stop="902" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E555341" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64042" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65931"/>
          <exon e_start="66008" e_stop="66064"/>
          <exon e_start="66533" e_stop="66673"/>
          <exon e_start="66775" e_stop="66796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTATGTGAACAGGAGTCCACTTCATTCCTATTGTATGCAATCATCAATCTAAATCTCTATTGTATGTCATTTGAAGGTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTGGTATGTCTGTTTTTTCATAATTATTACGTCCTTATAAGTGCTGCATTATGCAAAGATTCTTTGAAGGTGCTTTAGTGTCATGATAGTAGTCTGTTTTTCATGTGCTTGACTGCACGAGTTGGTGCTGATTAAGGCACTGTCTGAAGACATTTCAGTTTTTAAACATTTGATACTTTTTTGACCCTTGGCTGTCAGGTTCTTAGATCTCTTGTTTGCAGAACAAGAGAAGTTTTTAACCAATACAATTAGGTTTTGACATGCGAGTTTGGATGTATTATTACTCTTGACAGTGGGAACGAGAGCAGAACTAGTTTCTAGCATTTCAGAATTCTCTGCTCAAAAACTGCAATACTTTTCCTTGCATTTTTTTTCTTTTTTTGCATGGCTCTTTCCTCGTGGAGAATTGTTTAGCGCATAACATAAACTGAAGCATTTCATTTTGATACTAATGAACTTTTCAATGCACAGGTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAGGTTTGTGTTGTTTATCTTTGTTTGCAAGTGGATATTTCCATCTATTATTTCATTGAAGATTGTTACTTTATTGAGCTTTCATCAATTATAAACTATGACAGCCGCTCTTTCCTGGCGAAAATG</genome_strand>
        <mrna_strand>CTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTG............................................................................GTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCTATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAG.....................................................................................................CCGCTCTTTCCTGGCGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E248088" ref_strand="+" ref_description="SGN-E248088 [cLEF-47-P3]">
      <seq>ctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgccgcagctcgtgcagcagcagcagcaacagcctgtgaatcgtgaactaggaggaggaggaggagctgcagtaaggaacgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccaccattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaatcgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63742" stop="66080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64042" g_stop="64222" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="274" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="334" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="607" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E248088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64042" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG</genome_strand>
        <mrna_strand>CTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E299810" ref_strand="+" ref_description="SGN-E299810 [cLEW-1-I7]">
      <seq>ctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgccgcagctcgtgcagcagcagcagcaacagcctgtgaatcgtgaactaggaggaggaggaggagctgcagtaaggaacgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccaccattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaatcgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63742" stop="66069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64042" g_stop="64222" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="274" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="334" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65769" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="596" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E299810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64042" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTT</genome_strand>
        <mrna_strand>CTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E453689" ref_strand="+" ref_description="SGN-E453689 [cSTS-20-F22]">
      <seq>aaaatcaccatcaccaccaccttcagccgccgcagctgcagcagcagcagcagcagcatgtgaatcgtgaacaaggaggaggaggagctgcagtaaggaacaccgtcgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccactattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaaccgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggctggcttacattcataatgttccaagaatttgccatagagatgtgaaacctcaaaatcttttgggttgatcctctgacccatcaagtcaagctatgtgattttggaagtgcaaaagtcctggtgaatggtgaagcaatatttcgtacatttgctctcgctactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63792" stop="66877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64080" g_stop="64222" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.832"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="0.72"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="233" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="293" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="566" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="642" r_length="76" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76">
            <donor d_prob="0.892" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66008" g_stop="66064" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="699" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66533" g_stop="66577" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="743" r_length="44" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E453689" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64080" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65931"/>
          <exon e_start="66008" e_stop="66064"/>
          <exon e_start="66533" e_stop="66577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTG-CA-GTA-AGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTT-GGTATGTGAACAGGAGTCCACTTCATTCCTATTGTATGCAATCATCAATCTAAATCTCTATTGTATGTCATTTGAAGGTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTGGTATGTCTGTTTTTTCATAATTATTACGTCCTTATAAGTGCTGCATTATGCAAAGATTCTTTGAAGGTGCTTTAGTGTCATGATAGTAGTCTGTTTTTCATGTGCTTGACTGCACGAGTTGGTGCTGATTAAGGCACTGTCTGAAGACATTTCAGTTTTTAAACATTTGATACTTTTTTGACCCTTGGCTGTCAGGTTCTTAGATCTCTTGTTTGCAGAACAAGAGAAGTTTTTAACCAATACAATTAGGTTTTGACATGCGAGTTTGGATGTATTATTACTCTTGACAGTGGGAACGAGAGCAGAACTAGTTTCTAGCATTTCAGAATTCTCTGCTCAAAAACTGCAATACTTTTCCTTGCATTTTTTTTCTTTTTTTGCATGGCTCTTTCCTCGTGGAGAATTGTTTAGCGCATAACATAAACTGAAGCATTTCATTTTGATACTAATGAACTTTTCAATGCACAGGTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTAC</genome_strand>
        <mrna_strand>AAAATCACCATCACCACCACCTTCA---GCCGCCGCAG--C-TGCAGCAGCAGCAGCAGCAGCATGTGAATCGTGAACAAGGAGGAGGAGGAGCTGCAGTAAGGAACACCGTCGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACTATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAACCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGAATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGG............................................................................GTTGATCCTCTGACCCATCAAGTCAAGCTATGTGATTTTGGAAGTGCAAAAGTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGGTGAAGC-AATATTTCGTACATTTGCTCTCGCTACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E251327" ref_strand="+" ref_description="SGN-E251327 [cLEG-10-P22]">
      <seq>catcaccaccaccttcagccgccgccgcagctcgtgcagcagcagcagcaacagcctgtgaatcgtgaactaggaggaggaggaggagctgcagtaaggaacgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccaccattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaagcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaatcgtgaactacaactgatgcgcttgatggatcacccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63788" stop="65915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64088" g_stop="64222" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="228" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="288" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65615" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="396" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E251327" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64088" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAAT</genome_strand>
        <mrna_strand>CATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAA...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E560311" ref_strand="+" ref_description="SGN-E560311 [19944]">
      <seq>gcagctgcagcagcagcagcagcagcatgtgaatcgtgaacaaggaggtggaggagctgcagtaaggaacgccgtcgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccactattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaaccgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcattgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaacttttacatgtatcagatattcagagggctggcctacattcataatgttccaagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63822" stop="66199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64117" g_stop="64222" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.802"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="0.74"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="202" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="262" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="536" r_length="274" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.828" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65899" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="579" r_length="43" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E560311" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64117" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTG-CAGTAA-G-GAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAAC-TTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTT</genome_strand>
        <mrna_strand>GCAGCTGCAGCAGCAGCAGCAGCAGCATGTGAATCGTGAACAAGGAGGTGGAGGAGCTGCAGTAAGGAACGCCGTCGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACTATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAACCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCATTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCCTACATTCATAATGTTCCAAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E330136" ref_strand="+" ref_description="SGN-E330136 [cTOD-5-J3]">
      <seq>tgaactaggaggaggaggaggagctgcagtaaggaacgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccaccattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaagcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaatcgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggctggcttacattcataatgttccaaggatttgccatagagatgtgaaacctcaaaatcttttggttgatcctctgacccatcaagtcaagctgtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63853" stop="66342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64153" g_stop="64222" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="163" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="223" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="496" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="571" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66008" g_stop="66042" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="606" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E330136" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64153" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65931"/>
          <exon e_start="66008" e_stop="66042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTATGTGAACAGGAGTCCACTTCATTCCTATTGTATGCAATCATCAATCTAAATCTCTATTGTATGTCATTTGAAGGTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGA</genome_strand>
        <mrna_strand>TGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAA...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTG............................................................................GTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E447492" ref_strand="+" ref_description="SGN-E447492 [cSTA-26-B18]">
      <seq>cctctgacaggttatggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccactattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaaccgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcattgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggctggcctacattcataatgttccaagaatttgccatagagatgtgaaacctcaaaatcttttggttgatcctctgacccatcaagtcaagctatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="64723" stop="66341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65023" g_stop="65038" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65039" i_stop="65121" i_length="83">
            <donor d_prob="0.843" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="109" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="169" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="442" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="517" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76">
            <donor d_prob="0.892" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66008" g_stop="66041" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="551" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E447492" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65023" e_stop="65038"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65931"/>
          <exon e_start="66008" e_stop="66041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTATGTGAACAGGAGTCCACTTCATTCCTATTGTATGCAATCATCAATCTAAATCTCTATTGTATGTCATTTGAAGGTTGATCCTCTGACCCATCAAGTCAAGCTGTGTG</genome_strand>
        <mrna_strand>CCTCTGACAGGTTATG...................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACTATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAACCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCATTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCCTACATTCATAATGTTCCAAGAATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTG............................................................................GTTGATCCTCTGACCCATCAAGTCAAGCTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E468265" ref_strand="+" ref_description="SGN-E468265 [cSTB-3-I13]">
      <seq>gcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaagcggtataaaaaccgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggctggcttacattcataatgttccaagaatttgccatagagatgtgaaacctcaaaatcttttggttgatcctctgacccatcaagtcaagctatgtgattttggaagtgcaaaagtcctggtgaatggtgaagcaaatatttcgtacatttgctctcgctactacagagctccagaactcatatttggtgccacagaatatacaacatcaattgatatttggtcagcaggctgtgtccttgctgagcttcttctggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="64892" stop="66971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65192" g_stop="65214" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="83" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="356" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65857" g_stop="65931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="431" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76">
            <donor d_prob="0.892" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66008" g_stop="66064" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="488" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66533" g_stop="66671" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="627" r_length="139" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E468265" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65192" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65931"/>
          <exon e_start="66008" e_stop="66064"/>
          <exon e_start="66533" e_stop="66671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTATGTGAACAGGAGTCCACTTCATTCCTATTGTATGCAATCATCAATCTAAATCTCTATTGTATGTCATTTGAAGGTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTGGTATGTCTGTTTTTTCATAATTATTACGTCCTTATAAGTGCTGCATTATGCAAAGATTCTTTGAAGGTGCTTTAGTGTCATGATAGTAGTCTGTTTTTCATGTGCTTGACTGCACGAGTTGGTGCTGATTAAGGCACTGTCTGAAGACATTTCAGTTTTTAAACATTTGATACTTTTTTGACCCTTGGCTGTCAGGTTCTTAGATCTCTTGTTTGCAGAACAAGAGAAGTTTTTAACCAATACAATTAGGTTTTGACATGCGAGTTTGGATGTATTATTACTCTTGACAGTGGGAACGAGAGCAGAACTAGTTTCTAGCATTTCAGAATTCTCTGCTCAAAAACTGCAATACTTTTCCTTGCATTTTTTTTCTTTTTTTGCATGGCTCTTTCCTCGTGGAGAATTGTTTAGCGCATAACATAAACTGAAGCATTTCATTTTGATACTAATGAACTTTTCAATGCACAGGTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGC</genome_strand>
        <mrna_strand>GCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAGCGGTATAAAAACCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGAATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTG............................................................................GTTGATCCTCTGACCCATCAAGTCAAGCTATGTGATTTTGGAAGTGCAAAAGTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGGTGAAGCAAATATTTCGTACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAATATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E211707" ref_strand="+" ref_description="SGN-E211707 [cLEC-66-C5]">
      <seq>caaactttacatgtatcagatattcagagggctggcttacattcataatgttccaaggatttgccatagagatgtgaaacctcaaaatcttttggttgatcctctgacccatcaagtcaagctgtgtgattttggaagtgcaaaagtcctggtaaatggtgaagcaaatatttcatacatttgctctcgctactacagagctccagaactcatatttggtgccacagagtatacaacatcaattgatatttggtcagcaggctgtgtccttgctgagcttcttctggggcagccgctctttcctggcgaaaatgcagtagatcaactggtggagatcatcaaggtccttggtactcctactcgggaagaaattcgatgtatgaacccaaactacacagatttcagattcccacagataaaagctcatccttggcacaaggtattccataaaagaatgcctcctgaagcaattgatcttgcctcacggcttcttcaatattcaccaagtcttcgctgtactgcactagaagcatgtgcacattcgttctttgatgagcttcgtgagcccaatgcccgtctccctaatggacgtccatttccacctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="65462" stop="67703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65762" g_stop="65780" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65857" g_stop="65931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="94" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66008" g_stop="66064" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="151" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66533" g_stop="66673" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="292" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66674" i_stop="66774" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66775" g_stop="66825" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="343" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66826" i_stop="66906" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.051" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66907" g_stop="67002" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="439" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67003" i_stop="67135" i_length="133">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67136" g_stop="67219" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="523" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67318" g_stop="67403" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="609" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E211707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65762" e_stop="65780"/>
          <exon e_start="65857" e_stop="65931"/>
          <exon e_start="66008" e_stop="66064"/>
          <exon e_start="66533" e_stop="66673"/>
          <exon e_start="66775" e_stop="66825"/>
          <exon e_start="66907" e_stop="67002"/>
          <exon e_start="67136" e_stop="67219"/>
          <exon e_start="67318" e_stop="67403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTATGTGAACAGGAGTCCACTTCATTCCTATTGTATGCAATCATCAATCTAAATCTCTATTGTATGTCATTTGAAGGTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTGGTATGTCTGTTTTTTCATAATTATTACGTCCTTATAAGTGCTGCATTATGCAAAGATTCTTTGAAGGTGCTTTAGTGTCATGATAGTAGTCTGTTTTTCATGTGCTTGACTGCACGAGTTGGTGCTGATTAAGGCACTGTCTGAAGACATTTCAGTTTTTAAACATTTGATACTTTTTTGACCCTTGGCTGTCAGGTTCTTAGATCTCTTGTTTGCAGAACAAGAGAAGTTTTTAACCAATACAATTAGGTTTTGACATGCGAGTTTGGATGTATTATTACTCTTGACAGTGGGAACGAGAGCAGAACTAGTTTCTAGCATTTCAGAATTCTCTGCTCAAAAACTGCAATACTTTTCCTTGCATTTTTTTTCTTTTTTTGCATGGCTCTTTCCTCGTGGAGAATTGTTTAGCGCATAACATAAACTGAAGCATTTCATTTTGATACTAATGAACTTTTCAATGCACAGGTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAGGTTTGTGTTGTTTATCTTTGTTTGCAAGTGGATATTTCCATCTATTATTTCATTGAAGATTGTTACTTTATTGAGCTTTCATCAATTATAAACTATGACAGCCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAGGTGTGTCTTTATACTTCATTGTAGTAAATCTCAGACAACACTTACAGGATCTCTTTTTACTAATGAGAAACCTTGCCACAGGTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAGGTATTGTTTGTTATTGTTATATTTTGATAGTTATTCTGCACTAGATCATTTTCTTGTTGAAATATGTGTATGTTAACTACCCCTAAAATCAGTTTTATTTGAAACGAGAGCTAAAAGACTTTCATGGTTTCAGGTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCAGTAAGTTATCTCATTTTACCAGTGATATTCGTTAATGTTGTTTCATCTACAAAACCGTTTGTTGTATCAGTCTATTTACCTGCTTCTACTCCTTGCAGCTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTT</genome_strand>
        <mrna_strand>CAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTG............................................................................GTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAG.....................................................................................................CCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAG.................................................................................GTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAG.....................................................................................................................................GTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA..................................................................................................CTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E408583" ref_strand="+" ref_description="SGN-E408583 [PPI-11-F11]">
      <seq>gagggctggcttacattcataatgttccaagaatttgccatagagatgtgaaacctcaaaatcttttggttgatcctctgacccatcaagtcaagctatgtgattttggaagtgcaaaagtcctggtgaatggtgaagcaaatatttcgtacatttgctctcgctactacagagctccagaactcatatttggtgccacagaatatacaacatcaattgatatttggtcagcaggctgtgtccttgctgagcttcttctggggcagccgctctttcctggcgaaaatgcggtagaccaactggtggagatcatcaaggtccttggtactcctactcgggaagaaattcgatgtatgaacccaaactacacagatttcagattcccacagataaaagctcatccttggcacaaggtattccataaaagaatgcctcctgaagcaattgatcttgcctcacggcttcttcaatattcaccaagtcttcgctgtactgcactagaagcatgtgcacattcattctttgatgagcttcgtgagcccaatgcccgtctccctaatggacgtccatttccacctcttttcaactttaaacaagagttaactggagcttcacctgatttggtcaacaagctgatccctgagcatgtgtggaggcaacttggtttgaatttcccatttcctggtgcgacgtagttgtactaatgcaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="65564" stop="68769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65864" g_stop="65931" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76">
            <donor d_prob="0.892" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66008" g_stop="66064" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="125" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66533" g_stop="66673" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="266" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66674" i_stop="66774" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66775" g_stop="66825" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="317" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66826" i_stop="66906" i_length="81">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.051" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66907" g_stop="67002" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="413" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67003" i_stop="67135" i_length="133">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67136" g_stop="67219" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="497" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67318" g_stop="67419" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="599" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68357" g_stop="68469" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="712" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E408583" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65864" e_stop="65931"/>
          <exon e_start="66008" e_stop="66064"/>
          <exon e_start="66533" e_stop="66673"/>
          <exon e_start="66775" e_stop="66825"/>
          <exon e_start="66907" e_stop="67002"/>
          <exon e_start="67136" e_stop="67219"/>
          <exon e_start="67318" e_stop="67419"/>
          <exon e_start="68357" e_stop="68469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTATGTGAACAGGAGTCCACTTCATTCCTATTGTATGCAATCATCAATCTAAATCTCTATTGTATGTCATTTGAAGGTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTGGTATGTCTGTTTTTTCATAATTATTACGTCCTTATAAGTGCTGCATTATGCAAAGATTCTTTGAAGGTGCTTTAGTGTCATGATAGTAGTCTGTTTTTCATGTGCTTGACTGCACGAGTTGGTGCTGATTAAGGCACTGTCTGAAGACATTTCAGTTTTTAAACATTTGATACTTTTTTGACCCTTGGCTGTCAGGTTCTTAGATCTCTTGTTTGCAGAACAAGAGAAGTTTTTAACCAATACAATTAGGTTTTGACATGCGAGTTTGGATGTATTATTACTCTTGACAGTGGGAACGAGAGCAGAACTAGTTTCTAGCATTTCAGAATTCTCTGCTCAAAAACTGCAATACTTTTCCTTGCATTTTTTTTCTTTTTTTGCATGGCTCTTTCCTCGTGGAGAATTGTTTAGCGCATAACATAAACTGAAGCATTTCATTTTGATACTAATGAACTTTTCAATGCACAGGTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAGGTTTGTGTTGTTTATCTTTGTTTGCAAGTGGATATTTCCATCTATTATTTCATTGAAGATTGTTACTTTATTGAGCTTTCATCAATTATAAACTATGACAGCCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAGGTGTGTCTTTATACTTCATTGTAGTAAATCTCAGACAACACTTACAGGATCTCTTTTTACTAATGAGAAACCTTGCCACAGGTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAGGTATTGTTTGTTATTGTTATATTTTGATAGTTATTCTGCACTAGATCATTTTCTTGTTGAAATATGTGTATGTTAACTACCCCTAAAATCAGTTTTATTTGAAACGAGAGCTAAAAGACTTTCATGGTTTCAGGTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCAGTAAGTTATCTCATTTTACCAGTGATATTCGTTAATGTTGTTTCATCTACAAAACCGTTTGTTGTATCAGTCTATTTACCTGCTTCTACTCCTTGCAGCTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAGGTACAATTTTCGGAAACTTCTTAGTTTACTGACTTTGTTATGTTTCTCTGTAACTATTATCTAGAAAGTTATCTTTTGAGTTGTTTATTAAGTGTTGGTTCACTAGTTGAATTTATGATTATGCAGCTCTATGCACCCATCTGAACATTTTTTTCATTGATTAGAGCATTTTTTTTCCTTATCCATTATTTGAATGTTATGAAAACGGAAGGAGGTATTGACGGTGAAGCGGCACATCTTGTTCTCTTGTGAAGTGATAAATACAAGAAACAAACTATTAAAAGTAAATCCTTCTGTGATGAAGGATTTTCAAAGTGAATAATACAAGAAATTGGTGCGTTACATATTAATTCATGATTTCTTCGTGTTCTTCTTGTACTTTAAATGCATCATGCGTCTTGTCGGTTATCTTCTTTTTTCCGTTGCTTTTGATAATCCATTGTCTTTTCCCTCTCAAATAACACTCACTCACGTAATCTTTTGTCCTTCTGCGTTTCAAAATGTGAGACTTTTAAAGATTGTCTACATGTGCATGGATCCAAGCAATCATATTAACTGTGTTTCCAATTATTGTGTAACCATTTAATAAAACTGATTTTGGTGATTGACTGTCACGAGACTTGATCTCGAGTAAAATATGGTTTTAGAAAGTAATCACATTCCCCTACATTTAGCAGATCTTTAGACTTTTACTTCCACGATCTTTAGACAGTAATTTTGGGCTCTCTGTTACTGTCAGAAATATATTGACCAATTACAGAGGTCCCTGTTGTTATGAGGCTGTATTAGATATTTATTGTTATTATTACCAGTTAGACTATGTGTGGTAAGGCTGGCATATGAACCTTGCTTAAATTGATTGAGAGGCGAAACTTCCCTTTATGTAAGATGTTAGGGATCATGAAAGTAATGTTTATGTTCTGGCTGTTGCTTGCAGTTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATAT</genome_strand>
        <mrna_strand>GAGGGCTGGCTTACATTCATAATGTTCCAAGAATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTG............................................................................GTTGATCCTCTGACCCATCAAGTCAAGCTATGTGATTTTGGAAGTGCAAAAGTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGGTGAAGCAAATATTTCGTACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAATATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAG.....................................................................................................CCGCTCTTTCCTGGCGAAAATGCGGTAGACCAACTGGTGGAGATCATCAAG.................................................................................GTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAG.....................................................................................................................................GTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA..................................................................................................CTAGAAGCATGTGCACATTCATTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAGTTGTACTAATGCAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E596454" ref_strand="+" ref_description="SGN-E596454 [39937]">
      <seq>ttgctgacccatcaagtcaagctatgtgattttggaagtgcaaaagtcctggtgaatggtgaagcaaatatttcgtacatttgctctcgctactacagagctccagaactcatatttggtgccacagaatatacaacatcaattgatatttggtcagcaggctgtgtccttgctgagcttcttctggggcagccgctctttcctggcgaaaatgcggtagaccaactggtggagatcatcaaggtccttggtactcctactcgggaagaaattcgatgtatgaacccaaactacacagatttcagattcccacagataaaagctcatccttggcacaaggtattccataaaagaatgcctcctgaagcaattgatcttgcctcacggcttcttcaatattcaccaagtcttcgctgtactgcactagaagcatgtgcacattcattctttgatgagcttcgtgagcccaatgcccgtctccctaatggacgtccatttccacctcttttcaactttaaacaagagttaactggagcttcacctgatttggtcaacaagctgatccctgagcatgtgtggaggcaacttggtttgaatttcccatttcctggtgcgacgtagttgtactaatgcaatatagagttggtgtatcagacaaaatatatagggagtccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="65717" stop="68809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66014" g_stop="66064" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66533" g_stop="66673" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="192" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66674" i_stop="66774" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66775" g_stop="66825" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="243" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66826" i_stop="66906" i_length="81">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.051" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66907" g_stop="67002" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="339" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67003" i_stop="67135" i_length="133">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67136" g_stop="67219" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="423" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67318" g_stop="67419" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="525" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68357" g_stop="68509" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="678" r_length="153" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E596454" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66014" e_stop="66064"/>
          <exon e_start="66533" e_stop="66673"/>
          <exon e_start="66775" e_stop="66825"/>
          <exon e_start="66907" e_stop="67002"/>
          <exon e_start="67136" e_stop="67219"/>
          <exon e_start="67318" e_stop="67419"/>
          <exon e_start="68357" e_stop="68509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTGGTATGTCTGTTTTTTCATAATTATTACGTCCTTATAAGTGCTGCATTATGCAAAGATTCTTTGAAGGTGCTTTAGTGTCATGATAGTAGTCTGTTTTTCATGTGCTTGACTGCACGAGTTGGTGCTGATTAAGGCACTGTCTGAAGACATTTCAGTTTTTAAACATTTGATACTTTTTTGACCCTTGGCTGTCAGGTTCTTAGATCTCTTGTTTGCAGAACAAGAGAAGTTTTTAACCAATACAATTAGGTTTTGACATGCGAGTTTGGATGTATTATTACTCTTGACAGTGGGAACGAGAGCAGAACTAGTTTCTAGCATTTCAGAATTCTCTGCTCAAAAACTGCAATACTTTTCCTTGCATTTTTTTTCTTTTTTTGCATGGCTCTTTCCTCGTGGAGAATTGTTTAGCGCATAACATAAACTGAAGCATTTCATTTTGATACTAATGAACTTTTCAATGCACAGGTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAGGTTTGTGTTGTTTATCTTTGTTTGCAAGTGGATATTTCCATCTATTATTTCATTGAAGATTGTTACTTTATTGAGCTTTCATCAATTATAAACTATGACAGCCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAGGTGTGTCTTTATACTTCATTGTAGTAAATCTCAGACAACACTTACAGGATCTCTTTTTACTAATGAGAAACCTTGCCACAGGTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAGGTATTGTTTGTTATTGTTATATTTTGATAGTTATTCTGCACTAGATCATTTTCTTGTTGAAATATGTGTATGTTAACTACCCCTAAAATCAGTTTTATTTGAAACGAGAGCTAAAAGACTTTCATGGTTTCAGGTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCAGTAAGTTATCTCATTTTACCAGTGATATTCGTTAATGTTGTTTCATCTACAAAACCGTTTGTTGTATCAGTCTATTTACCTGCTTCTACTCCTTGCAGCTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAGGTACAATTTTCGGAAACTTCTTAGTTTACTGACTTTGTTATGTTTCTCTGTAACTATTATCTAGAAAGTTATCTTTTGAGTTGTTTATTAAGTGTTGGTTCACTAGTTGAATTTATGATTATGCAGCTCTATGCACCCATCTGAACATTTTTTTCATTGATTAGAGCATTTTTTTTCCTTATCCATTATTTGAATGTTATGAAAACGGAAGGAGGTATTGACGGTGAAGCGGCACATCTTGTTCTCTTGTGAAGTGATAAATACAAGAAACAAACTATTAAAAGTAAATCCTTCTGTGATGAAGGATTTTCAAAGTGAATAATACAAGAAATTGGTGCGTTACATATTAATTCATGATTTCTTCGTGTTCTTCTTGTACTTTAAATGCATCATGCGTCTTGTCGGTTATCTTCTTTTTTCCGTTGCTTTTGATAATCCATTGTCTTTTCCCTCTCAAATAACACTCACTCACGTAATCTTTTGTCCTTCTGCGTTTCAAAATGTGAGACTTTTAAAGATTGTCTACATGTGCATGGATCCAAGCAATCATATTAACTGTGTTTCCAATTATTGTGTAACCATTTAATAAAACTGATTTTGGTGATTGACTGTCACGAGACTTGATCTCGAGTAAAATATGGTTTTAGAAAGTAATCACATTCCCCTACATTTAGCAGATCTTTAGACTTTTACTTCCACGATCTTTAGACAGTAATTTTGGGCTCTCTGTTACTGTCAGAAATATATTGACCAATTACAGAGGTCCCTGTTGTTATGAGGCTGTATTAGATATTTATTGTTATTATTACCAGTTAGACTATGTGTGGTAAGGCTGGCATATGAACCTTGCTTAAATTGATTGAGAGGCGAAACTTCCCTTTATGTAAGATGTTAGGGATCATGAAAGTAATGTTTATGTTCTGGCTGTTGCTTGCAGTTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGT</genome_strand>
        <mrna_strand>TTGCTGACCCATCAAGTCAAGCTATGTGATTTTGGAAGTGCAAAAGTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGGTGAAGCAAATATTTCGTACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAATATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAG.....................................................................................................CCGCTCTTTCCTGGCGAAAATGCGGTAGACCAACTGGTGGAGATCATCAAG.................................................................................GTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAG.....................................................................................................................................GTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA..................................................................................................CTAGAAGCATGTGCACATTCATTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAGTTGTACTAATGCAATATAGAGTTGGTGTATCAGACAAAATATATAGGGAGTCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E243307" ref_strand="+" ref_description="SGN-E243307 [cLEF-12-H21]">
      <seq>tgattttggaagtgcaaaagtcctggtaaatggtgaagcaaatatttcatacatttgctctcgctactacagagctccagaactcatatttggtgccacagagtatacaacatcaattgatatttggtcagcaggctgtgtccttgctgagcttcttctggggcagccgctctttcctggcgaaaatgcagtagatcaactggtggagatcatcaaggtccttggtactcctactcgggaagaaattcgatgtatgaacccaaactacacagatttcagattcccacagataaaagctcatccttggcacaaggtattccataaaagaatgcctcctgaagcaattgatcttgcctcacggcttcttcaatattcaccaagtcttcgctgtactgcactagaagcatgtgcacattcgttctttgatgagcttcgtgagcccaatgcccgtctccctaatggacgtccatttccacctcttttcaactttaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="65740" stop="67714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66040" g_stop="66064" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66533" g_stop="66673" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="166" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66674" i_stop="66774" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66775" g_stop="66825" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="217" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66826" i_stop="66906" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.051" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66907" g_stop="67002" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="313" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67003" i_stop="67135" i_length="133">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67136" g_stop="67219" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="397" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67318" g_stop="67414" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="494" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E243307" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66040" e_stop="66064"/>
          <exon e_start="66533" e_stop="66673"/>
          <exon e_start="66775" e_stop="66825"/>
          <exon e_start="66907" e_stop="67002"/>
          <exon e_start="67136" e_stop="67219"/>
          <exon e_start="67318" e_stop="67414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTGGAAGTGCAAAAGTCCTGGTATGTCTGTTTTTTCATAATTATTACGTCCTTATAAGTGCTGCATTATGCAAAGATTCTTTGAAGGTGCTTTAGTGTCATGATAGTAGTCTGTTTTTCATGTGCTTGACTGCACGAGTTGGTGCTGATTAAGGCACTGTCTGAAGACATTTCAGTTTTTAAACATTTGATACTTTTTTGACCCTTGGCTGTCAGGTTCTTAGATCTCTTGTTTGCAGAACAAGAGAAGTTTTTAACCAATACAATTAGGTTTTGACATGCGAGTTTGGATGTATTATTACTCTTGACAGTGGGAACGAGAGCAGAACTAGTTTCTAGCATTTCAGAATTCTCTGCTCAAAAACTGCAATACTTTTCCTTGCATTTTTTTTCTTTTTTTGCATGGCTCTTTCCTCGTGGAGAATTGTTTAGCGCATAACATAAACTGAAGCATTTCATTTTGATACTAATGAACTTTTCAATGCACAGGTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAGGTTTGTGTTGTTTATCTTTGTTTGCAAGTGGATATTTCCATCTATTATTTCATTGAAGATTGTTACTTTATTGAGCTTTCATCAATTATAAACTATGACAGCCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAGGTGTGTCTTTATACTTCATTGTAGTAAATCTCAGACAACACTTACAGGATCTCTTTTTACTAATGAGAAACCTTGCCACAGGTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAGGTATTGTTTGTTATTGTTATATTTTGATAGTTATTCTGCACTAGATCATTTTCTTGTTGAAATATGTGTATGTTAACTACCCCTAAAATCAGTTTTATTTGAAACGAGAGCTAAAAGACTTTCATGGTTTCAGGTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCAGTAAGTTATCTCATTTTACCAGTGATATTCGTTAATGTTGTTTCATCTACAAAACCGTTTGTTGTATCAGTCTATTTACCTGCTTCTACTCCTTGCAGCTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAAC</genome_strand>
        <mrna_strand>TGATTTTGGAAGTGCAAAAGTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAG.....................................................................................................CCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAG.................................................................................GTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAG.....................................................................................................................................GTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA..................................................................................................CTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E548601" ref_strand="-" ref_description="SGN-E548601 [TUS-62-L9]">
      <seq>gggcagccgctctttcctggcgaaaatgcagtagatcaactggtggagatcatcaaggtcttggtactcctactcgggaagaaattcgatgtatgaacccaaactacacagatttcagattcccacagataaaagctcatccttggcacaaggtattccataaaagaatgcctcctgaagcaattgatcttgcctcacggcttcttcaatattcaccaagtcttcgctgtactgcactagaagcatgtgcacattcgttctttgatgagcttcgtgagcccaatgcccgtctccctaatggacgtccatttccacctcttttcaactttaaacaagagttaactggagcttcacctgatttggtcaacaagctgatccctgagcatgtgtggaggcaacttggtttgaatttcccatttcctggtgcgacgtaattgtactaatgtaatatagagttggtgtatcagaaaaaatatatagggagtccttgtggattaatgtaaccatgcattttggcgtaaccagtggctatgcacgcatgtaaaagttgtatgcatatagccgctgtttggcttacaagaagtgatcctgtctctacttgtgtcctcttttagctaatagcagacctgttgcctcttttgtacattgtttttgataagaagaattcagataggagtataaagtgataaatattgtaatgtctagttaagcagatttccttgagagaccttctggagcactaggacttgtagctttgggttgtagttatatttatatgcaagttgtttttagctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="66470" stop="69115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66668" g_stop="66673" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66674" i_stop="66774" i_length="101">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66775" g_stop="66825" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="57" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66826" i_stop="66906" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.051" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66907" g_stop="67002" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="152" r_length="95" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67003" i_stop="67135" i_length="133">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67136" g_stop="67219" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="236" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67318" g_stop="67419" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="338" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68357" g_stop="68814" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="796" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="797" polyA_stop="807"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E548601" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548601" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66668" e_stop="66673"/>
          <exon e_start="66775" e_stop="66825"/>
          <exon e_start="66907" e_stop="67002"/>
          <exon e_start="67136" e_stop="67219"/>
          <exon e_start="67318" e_stop="67419"/>
          <exon e_start="68357" e_stop="68814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAGGTTTGTGTTGTTTATCTTTGTTTGCAAGTGGATATTTCCATCTATTATTTCATTGAAGATTGTTACTTTATTGAGCTTTCATCAATTATAAACTATGACAGCCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAGGTGTGTCTTTATACTTCATTGTAGTAAATCTCAGACAACACTTACAGGATCTCTTTTTACTAATGAGAAACCTTGCCACAGGTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAGGTATTGTTTGTTATTGTTATATTTTGATAGTTATTCTGCACTAGATCATTTTCTTGTTGAAATATGTGTATGTTAACTACCCCTAAAATCAGTTTTATTTGAAACGAGAGCTAAAAGACTTTCATGGTTTCAGGTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCAGTAAGTTATCTCATTTTACCAGTGATATTCGTTAATGTTGTTTCATCTACAAAACCGTTTGTTGTATCAGTCTATTTACCTGCTTCTACTCCTTGCAGCTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAGGTACAATTTTCGGAAACTTCTTAGTTTACTGACTTTGTTATGTTTCTCTGTAACTATTATCTAGAAAGTTATCTTTTGAGTTGTTTATTAAGTGTTGGTTCACTAGTTGAATTTATGATTATGCAGCTCTATGCACCCATCTGAACATTTTTTTCATTGATTAGAGCATTTTTTTTCCTTATCCATTATTTGAATGTTATGAAAACGGAAGGAGGTATTGACGGTGAAGCGGCACATCTTGTTCTCTTGTGAAGTGATAAATACAAGAAACAAACTATTAAAAGTAAATCCTTCTGTGATGAAGGATTTTCAAAGTGAATAATACAAGAAATTGGTGCGTTACATATTAATTCATGATTTCTTCGTGTTCTTCTTGTACTTTAAATGCATCATGCGTCTTGTCGGTTATCTTCTTTTTTCCGTTGCTTTTGATAATCCATTGTCTTTTCCCTCTCAAATAACACTCACTCACGTAATCTTTTGTCCTTCTGCGTTTCAAAATGTGAGACTTTTAAAGATTGTCTACATGTGCATGGATCCAAGCAATCATATTAACTGTGTTTCCAATTATTGTGTAACCATTTAATAAAACTGATTTTGGTGATTGACTGTCACGAGACTTGATCTCGAGTAAAATATGGTTTTAGAAAGTAATCACATTCCCCTACATTTAGCAGATCTTTAGACTTTTACTTCCACGATCTTTAGACAGTAATTTTGGGCTCTCTGTTACTGTCAGAAATATATTGACCAATTACAGAGGTCCCTGTTGTTATGAGGCTGTATTAGATATTTATTGTTATTATTACCAGTTAGACTATGTGTGGTAAGGCTGGCATATGAACCTTGCTTAAATTGATTGAGAGGCGAAACTTCCCTTTATGTAAGATGTTAGGGATCATGAAAGTAATGTTTATGTTCTGGCTGTTGCTTGCAGTTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCT</genome_strand>
        <mrna_strand>GGGCAG.....................................................................................................CCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAG.................................................................................GT-CTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAG.....................................................................................................................................GTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA..................................................................................................CTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E339016" ref_strand="+" ref_description="SGN-E339016 [cTOF-6-M20]">
      <seq>gatcatcaaggtccttggtactcctactcgggaagaaattcgatgtatgaacccaaactacacagatttcagattcccacagataaaagctcatccttggcacaaggtattccataaaagaatgcctcctgaagcaattgatcttgcctcacggcttcttcaatattcaccaagtcttcgctgtactgcactagaagcatgtgcacattcgttctttgatgagcttcgtgagcccaatgcccgtctccctaatggacgtccatttccacctcttttcaactttaaacaagagttaactggagcttcacctgatttggtcaacaagctgatccctgagcatgtgtggaggcaacttggtttgaatttcccatttcctggtgcgacgtaattgtactaatgtttttgataagaagaattcagataggagtataaagtgataaatattgtaatgtctagttaagcagatttccttgagagaccttctggagcactaggacttgtagctttgggtntgtagttatatttattatgcaagttgtttttagctcaaannanaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="66602" stop="69115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66816" g_stop="66825" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66826" i_stop="66906" i_length="81">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.051" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66907" g_stop="67002" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="106" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67003" i_stop="67135" i_length="133">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67136" g_stop="67219" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="190" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67318" g_stop="67419" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="292" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68357" g_stop="68462" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="398" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68463" i_stop="68665" i_length="203">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68666" g_stop="68814" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="549" r_length="151" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="576"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E339016" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66816" e_stop="66825"/>
          <exon e_start="66907" e_stop="67002"/>
          <exon e_start="67136" e_stop="67219"/>
          <exon e_start="67318" e_stop="67419"/>
          <exon e_start="68357" e_stop="68462"/>
          <exon e_start="68666" e_stop="68814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATCAAGGTGTGTCTTTATACTTCATTGTAGTAAATCTCAGACAACACTTACAGGATCTCTTTTTACTAATGAGAAACCTTGCCACAGGTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAGGTATTGTTTGTTATTGTTATATTTTGATAGTTATTCTGCACTAGATCATTTTCTTGTTGAAATATGTGTATGTTAACTACCCCTAAAATCAGTTTTATTTGAAACGAGAGCTAAAAGACTTTCATGGTTTCAGGTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCAGTAAGTTATCTCATTTTACCAGTGATATTCGTTAATGTTGTTTCATCTACAAAACCGTTTGTTGTATCAGTCTATTTACCTGCTTCTACTCCTTGCAGCTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAGGTACAATTTTCGGAAACTTCTTAGTTTACTGACTTTGTTATGTTTCTCTGTAACTATTATCTAGAAAGTTATCTTTTGAGTTGTTTATTAAGTGTTGGTTCACTAGTTGAATTTATGATTATGCAGCTCTATGCACCCATCTGAACATTTTTTTCATTGATTAGAGCATTTTTTTTCCTTATCCATTATTTGAATGTTATGAAAACGGAAGGAGGTATTGACGGTGAAGCGGCACATCTTGTTCTCTTGTGAAGTGATAAATACAAGAAACAAACTATTAAAAGTAAATCCTTCTGTGATGAAGGATTTTCAAAGTGAATAATACAAGAAATTGGTGCGTTACATATTAATTCATGATTTCTTCGTGTTCTTCTTGTACTTTAAATGCATCATGCGTCTTGTCGGTTATCTTCTTTTTTCCGTTGCTTTTGATAATCCATTGTCTTTTCCCTCTCAAATAACACTCACTCACGTAATCTTTTGTCCTTCTGCGTTTCAAAATGTGAGACTTTTAAAGATTGTCTACATGTGCATGGATCCAAGCAATCATATTAACTGTGTTTCCAATTATTGTGTAACCATTTAATAAAACTGATTTTGGTGATTGACTGTCACGAGACTTGATCTCGAGTAAAATATGGTTTTAGAAAGTAATCACATTCCCCTACATTTAGCAGATCTTTAGACTTTTACTTCCACGATCTTTAGACAGTAATTTTGGGCTCTCTGTTACTGTCAGAAATATATTGACCAATTACAGAGGTCCCTGTTGTTATGAGGCTGTATTAGATATTTATTGTTATTATTACCAGTTAGACTATGTGTGGTAAGGCTGGCATATGAACCTTGCTTAAATTGATTGAGAGGCGAAACTTCCCTTTATGTAAGATGTTAGGGATCATGAAAGTAATGTTTATGTTCTGGCTGTTGCTTGCAGTTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGT-TGTAGTTATATTTA-TATGCAAGTTGTTTTTAGCTCT</genome_strand>
        <mrna_strand>GATCATCAAG.................................................................................GTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAG.....................................................................................................................................GTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA..................................................................................................CTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAAT...........................................................................................................................................................................................................GTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTNTGTAGTTATATTTATTATGCAAGTTGTTTTTAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E352889" ref_strand="+" ref_description="SGN-E352889 [cTOS-11-H9]">
      <seq>tgaagcaattgatcttgcctcacggcttcttcaatattcaccaagtcttcgctgtactgcactagaagcatgtgcacattcgttctttgatgagcttcgtgagcccaatgcccgtctccctaatggacgtccatttccacctcttttcaactttaaacaagagttaactggagcttcacctgatttggtcaacaagctgatccctgagcatgtgtggaggcaacttggtttgaatttcccatttcctggtgcgacgtaattgtactaatgtaatatagagttggtgtatcagaaaaaatatatagggagtccttgtggattaatgtaaccatgcattttggcgtaaccagtggctatgcacgcatgtaaaagttgtatgcatatagccgctgtttggcttacaagaagtgatcctgtctctacttgtgtcctcttttagctaatagcagacctgttgcctcttttgtacattgtttttgataagaagaattcagataggagtataaagtgataaatattgtaatgtctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="66859" stop="69022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67159" g_stop="67219" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67318" g_stop="67419" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="163" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68357" g_stop="68731" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="538" r_length="375" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E352889" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67159" e_stop="67219"/>
          <exon e_start="67318" e_stop="67419"/>
          <exon e_start="68357" e_stop="68731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCAGTAAGTTATCTCATTTTACCAGTGATATTCGTTAATGTTGTTTCATCTACAAAACCGTTTGTTGTATCAGTCTATTTACCTGCTTCTACTCCTTGCAGCTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAGGTACAATTTTCGGAAACTTCTTAGTTTACTGACTTTGTTATGTTTCTCTGTAACTATTATCTAGAAAGTTATCTTTTGAGTTGTTTATTAAGTGTTGGTTCACTAGTTGAATTTATGATTATGCAGCTCTATGCACCCATCTGAACATTTTTTTCATTGATTAGAGCATTTTTTTTCCTTATCCATTATTTGAATGTTATGAAAACGGAAGGAGGTATTGACGGTGAAGCGGCACATCTTGTTCTCTTGTGAAGTGATAAATACAAGAAACAAACTATTAAAAGTAAATCCTTCTGTGATGAAGGATTTTCAAAGTGAATAATACAAGAAATTGGTGCGTTACATATTAATTCATGATTTCTTCGTGTTCTTCTTGTACTTTAAATGCATCATGCGTCTTGTCGGTTATCTTCTTTTTTCCGTTGCTTTTGATAATCCATTGTCTTTTCCCTCTCAAATAACACTCACTCACGTAATCTTTTGTCCTTCTGCGTTTCAAAATGTGAGACTTTTAAAGATTGTCTACATGTGCATGGATCCAAGCAATCATATTAACTGTGTTTCCAATTATTGTGTAACCATTTAATAAAACTGATTTTGGTGATTGACTGTCACGAGACTTGATCTCGAGTAAAATATGGTTTTAGAAAGTAATCACATTCCCCTACATTTAGCAGATCTTTAGACTTTTACTTCCACGATCTTTAGACAGTAATTTTGGGCTCTCTGTTACTGTCAGAAATATATTGACCAATTACAGAGGTCCCTGTTGTTATGAGGCTGTATTAGATATTTATTGTTATTATTACCAGTTAGACTATGTGTGGTAAGGCTGGCATATGAACCTTGCTTAAATTGATTGAGAGGCGAAACTTCCCTTTATGTAAGATGTTAGGGATCATGAAAGTAATGTTTATGTTCTGGCTGTTGCTTGCAGTTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAG</genome_strand>
        <mrna_strand>TGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA..................................................................................................CTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E424325" ref_strand="-" ref_description="SGN-E424325 [STM-43-K20]">
      <seq>actgcactagaagcatgtgcacattcattctttgatgagcttcgtgagcccaatgcccgtctccctaatggacgtccatttccacctcttttcaactttaaacaagagttaactggagcttcacctgatttggtcaacaagctgatccctgagcatgtgtggaggcaacttggtttgaatttcccatttcctggtgcgacgtagttgtactaatgcaatatagagttggtgtatcagaaaaaatatatagggagtccttatggattaatgtaaccatgcattttggcttaaccagtggctatgtatgcacgtaaaagttgtatgtgtatagtcgctgtttggcttacaaggaagtgatcctgcctcaacttatgtcctcttttagctaatagcagacctgttgcctcttttgtacattgtttttgataagaagatttcagatagaagtataaaatgataaatattgtaatgccttagttaagcagatttccttgagagagaccttctgaagcactaggacttgtagcttttggttgtagtaatatttatatgcaagttgtttttagctctctttttatttttgaatgtaaggcgaataagattttctcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="67013" stop="69157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67214" g_stop="67219" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67318" g_stop="67419" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="108" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68357" g_stop="68857" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="612" r_length="504" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E424325" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424325" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67214" e_stop="67219"/>
          <exon e_start="67318" e_stop="67419"/>
          <exon e_start="68357" e_stop="68857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCAGTAAGTTATCTCATTTTACCAGTGATATTCGTTAATGTTGTTTCATCTACAAAACCGTTTGTTGTATCAGTCTATTTACCTGCTTCTACTCCTTGCAGCTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAGGTACAATTTTCGGAAACTTCTTAGTTTACTGACTTTGTTATGTTTCTCTGTAACTATTATCTAGAAAGTTATCTTTTGAGTTGTTTATTAAGTGTTGGTTCACTAGTTGAATTTATGATTATGCAGCTCTATGCACCCATCTGAACATTTTTTTCATTGATTAGAGCATTTTTTTTCCTTATCCATTATTTGAATGTTATGAAAACGGAAGGAGGTATTGACGGTGAAGCGGCACATCTTGTTCTCTTGTGAAGTGATAAATACAAGAAACAAACTATTAAAAGTAAATCCTTCTGTGATGAAGGATTTTCAAAGTGAATAATACAAGAAATTGGTGCGTTACATATTAATTCATGATTTCTTCGTGTTCTTCTTGTACTTTAAATGCATCATGCGTCTTGTCGGTTATCTTCTTTTTTCCGTTGCTTTTGATAATCCATTGTCTTTTCCCTCTCAAATAACACTCACTCACGTAATCTTTTGTCCTTCTGCGTTTCAAAATGTGAGACTTTTAAAGATTGTCTACATGTGCATGGATCCAAGCAATCATATTAACTGTGTTTCCAATTATTGTGTAACCATTTAATAAAACTGATTTTGGTGATTGACTGTCACGAGACTTGATCTCGAGTAAAATATGGTTTTAGAAAGTAATCACATTCCCCTACATTTAGCAGATCTTTAGACTTTTACTTCCACGATCTTTAGACAGTAATTTTGGGCTCTCTGTTACTGTCAGAAATATATTGACCAATTACAGAGGTCCCTGTTGTTATGAGGCTGTATTAGATATTTATTGTTATTATTACCAGTTAGACTATGTGTGGTAAGGCTGGCATATGAACCTTGCTTAAATTGATTGAGAGGCGAAACTTCCCTTTATGTAAGATGTTAGGGATCATGAAAGTAATGTTTATGTTCTGGCTGTTGCTTGCAGTTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAA-GAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTC-TAGTTAAGCAGATTTCCTT--GAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCTATTTTTATTTTTTAATATAAGGCATATATGAATTATCTCTTCT</genome_strand>
        <mrna_strand>ACTGCA..................................................................................................CTAGAAGCATGTGCACATTCATTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAGTTGTACTAATGCAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTATGGATTAATGTAACCATGCATTTTGGCTTAACCAGTGGCTATGTATGCACGTAAAAGTTGTATGTGTATAGTCGCTGTTTGGCTTACAAGGAAGTGATCCTGCCTCAACTTATGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGATTTCAGATAGAAGTATAAAATGATAAATATTGTAATGCCTTAGTTAAGCAGATTTCCTTGAGAGAGACCTTCTGAAGCACTAGGACTTGTAGCTTTTGGTTGTAGTAATATTTATATGCAAGTTGTTTTTAGCTCTCTTTTTATTTTTGAATGTAAGGCGAATAAG-ATTTTCTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E299807" ref_strand="-" ref_description="SGN-E299807 [cLEW-1-G23]">
      <seq>catgtgcacattcgttctttgatgagcttcgtgagcccaatgcccgtctccttaatggacgtccatttccacctcttttcaactttaaacaagagttaactggagcttcacctgatttggtcaacaagctgatccctgagcatgtgtggaggcaacttggtttgaatttcccatttcctggtgcgacgtaattgtactaatgtaatatagagttggtgtatcagaaaaaatatatagggagtccttgtggattaatgtaaccatgcattttggcgtaaccagtggctatgcacgcatgtaaaagttgtatgcatatagccgctgtttggcttacaagaagtgatcctgtctctacttgtgtcctcttttagctaatagcagacctgttgcctcttttgtacattgtttttgataagaagaattcagataggagtataaagtgataaatattgtaatgtctagttaagcagatttccttgagagaccttctggagcactaggacttgtagctttgggttgtagttatatttatatgcaagttgtttttagctctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="67025" stop="69115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67325" g_stop="67419" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68357" g_stop="68814" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="553" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="563"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E299807" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299807" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67325" e_stop="67419"/>
          <exon e_start="68357" e_stop="68814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAGGTACAATTTTCGGAAACTTCTTAGTTTACTGACTTTGTTATGTTTCTCTGTAACTATTATCTAGAAAGTTATCTTTTGAGTTGTTTATTAAGTGTTGGTTCACTAGTTGAATTTATGATTATGCAGCTCTATGCACCCATCTGAACATTTTTTTCATTGATTAGAGCATTTTTTTTCCTTATCCATTATTTGAATGTTATGAAAACGGAAGGAGGTATTGACGGTGAAGCGGCACATCTTGTTCTCTTGTGAAGTGATAAATACAAGAAACAAACTATTAAAAGTAAATCCTTCTGTGATGAAGGATTTTCAAAGTGAATAATACAAGAAATTGGTGCGTTACATATTAATTCATGATTTCTTCGTGTTCTTCTTGTACTTTAAATGCATCATGCGTCTTGTCGGTTATCTTCTTTTTTCCGTTGCTTTTGATAATCCATTGTCTTTTCCCTCTCAAATAACACTCACTCACGTAATCTTTTGTCCTTCTGCGTTTCAAAATGTGAGACTTTTAAAGATTGTCTACATGTGCATGGATCCAAGCAATCATATTAACTGTGTTTCCAATTATTGTGTAACCATTTAATAAAACTGATTTTGGTGATTGACTGTCACGAGACTTGATCTCGAGTAAAATATGGTTTTAGAAAGTAATCACATTCCCCTACATTTAGCAGATCTTTAGACTTTTACTTCCACGATCTTTAGACAGTAATTTTGGGCTCTCTGTTACTGTCAGAAATATATTGACCAATTACAGAGGTCCCTGTTGTTATGAGGCTGTATTAGATATTTATTGTTATTATTACCAGTTAGACTATGTGTGGTAAGGCTGGCATATGAACCTTGCTTAAATTGATTGAGAGGCGAAACTTCCCTTTATGTAAGATGTTAGGGATCATGAAAGTAATGTTTATGTTCTGGCTGTTGCTTGCAGTTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCT</genome_strand>
        <mrna_strand>CATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCTTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E297191" ref_strand="+" ref_description="SGN-E297191 [cLET-29-B4]">
      <seq>gttctttgatgagcttcgtgagcccaatgcccgtctccctaatggacgtgcatttccacctcttttcaactttaaacaagagttaactggagcttcacctgatttggtcaacaagctgatcccttggcatgtgtggaggcaacttgggttgaatttcccatttcctggtgcgacgtaattgtactaatgtaatatagagttggtgtatcaaaaaaaatatatagggagtccttgtggattaatgtaaccatgcattttggcgtaaccagtggctatgcacgcatgttaaagatgtatgcatatagccgctggttggcttacaagaagtgatcccgtctctacttggggcctctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="67038" stop="68931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67338" g_stop="67419" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68357" g_stop="68631" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="357" r_length="275" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E297191" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67338" e_stop="67419"/>
          <exon e_start="68357" e_stop="68631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAGGTACAATTTTCGGAAACTTCTTAGTTTACTGACTTTGTTATGTTTCTCTGTAACTATTATCTAGAAAGTTATCTTTTGAGTTGTTTATTAAGTGTTGGTTCACTAGTTGAATTTATGATTATGCAGCTCTATGCACCCATCTGAACATTTTTTTCATTGATTAGAGCATTTTTTTTCCTTATCCATTATTTGAATGTTATGAAAACGGAAGGAGGTATTGACGGTGAAGCGGCACATCTTGTTCTCTTGTGAAGTGATAAATACAAGAAACAAACTATTAAAAGTAAATCCTTCTGTGATGAAGGATTTTCAAAGTGAATAATACAAGAAATTGGTGCGTTACATATTAATTCATGATTTCTTCGTGTTCTTCTTGTACTTTAAATGCATCATGCGTCTTGTCGGTTATCTTCTTTTTTCCGTTGCTTTTGATAATCCATTGTCTTTTCCCTCTCAAATAACACTCACTCACGTAATCTTTTGTCCTTCTGCGTTTCAAAATGTGAGACTTTTAAAGATTGTCTACATGTGCATGGATCCAAGCAATCATATTAACTGTGTTTCCAATTATTGTGTAACCATTTAATAAAACTGATTTTGGTGATTGACTGTCACGAGACTTGATCTCGAGTAAAATATGGTTTTAGAAAGTAATCACATTCCCCTACATTTAGCAGATCTTTAGACTTTTACTTCCACGATCTTTAGACAGTAATTTTGGGCTCTCTGTTACTGTCAGAAATATATTGACCAATTACAGAGGTCCCTGTTGTTATGAGGCTGTATTAGATATTTATTGTTATTATTACCAGTTAGACTATGTGTGGTAAGGCTGGCATATGAACCTTGCTTAAATTGATTGAGAGGCGAAACTTCCCTTTATGTAAGATGTTAGGGATCATGAAAGTAATGTTTATGTTCTGGCTGTTGCTTGCAGTTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTA</genome_strand>
        <mrna_strand>GTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTGCATTTCCACCTCTTTTCAACTTTAAACAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTTGGCATGTGTGGAGGCAACTTGGGTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAAAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTTAAAGATGTATGCATATAGCCGCTGGTTGGCTTACAAGAAGTGATCCCGTCTCTACTTGGGGCCTCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E335149" ref_strand="+" ref_description="SGN-E335149 [cTOE-1-M22]">
      <seq>atgtgtggaggcaaccttgggtttgaacttcccacttcctgggtggccgaccgtaattgtacctaatgtaatatagagttggtggtatcagaaaaaatatatagggagtccttgtggattaatgtaacccatgccattttggcgtaaccagtggctatgccaccgccatgtaaaagttgtatgccatatagccgctgtttggcttaccaagaagtgatcctgtctctaccttgtgtcctcttttagctaatagcagacctgttgcctcttttgtccattgtttttgataagaagaattcagataggagtataaagtgataaatattgtaatgtctagttaagcagatttccttgagagaccttctggagcactaggacttgtagctttgggttgtagttatatttatatgcaagttgtttttagctctatttttattttttaatataaggcatatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="68103" stop="69145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68403" g_stop="68845" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E335149" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68403" e_stop="68845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTGGAGGCAA-CTT-GGTTTGAATTTCCCATTTCCT-GGT-GC-GAC-GTAATTGTAC-TAATGTAATATAGAGTTGGT-GTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAA-CCATG-CATTTTGGCGTAACCAGTGGCTATG-CA-CG-CATGTAAAAGTTGTATG-CATATAGCCGCTGTTTGGCTTA-CAAGAAGTGATCCTGTCTCTA-CTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCTATTTTTATTTTTTAATATAAGGCATATATGA</genome_strand>
        <mrna_strand>ATGTGTGGAGGCAACCTTGGGTTTGAACTTCCCACTTCCTGGGTGGCCGACCGTAATTGTACCTAATGTAATATAGAGTTGGTGGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCCATGCCATTTTGGCGTAACCAGTGGCTATGCCACCGCCATGTAAAAGTTGTATGCCATATAGCCGCTGTTTGGCTTACCAAGAAGTGATCCTGTCTCTACCTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTCCATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCTATTTTTATTTTTTAATATAAGGCATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E232669" ref_strand="-" ref_description="SGN-E232669 [cLEL-5-I9]">
      <seq>aatgtaatatagagttggtgtatcagaaaaaatatatagggagtccttgtggattaatgtaaccatgcattttggcgtaaccagtggctatgcacgcatgtaaaagttgtatgcatatagccgctgtttggcttacaagaagtgatcctgtctctacttgtgtcctcttttagctaatagcagacctgttgcctcttttgtacattgtttttgataagaagaattcagataggagtataaagtgataaatattgtaatgtctagttaagcagatttccttgagagaccatctggagcactaggacttgtagctttgggttgtagttatatttatatgcaagttgttttcagctctaaaaaaaaaaaactcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="68160" stop="69115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68460" g_stop="68814" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="368"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E232669" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232669" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68460" e_stop="68814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCT</genome_strand>
        <mrna_strand>AATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCATCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTCAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E232169" ref_strand="-" ref_description="SGN-E232169 [cLEL-5-I9]">
      <seq>gttggtgtatcaaaaaaaatatatagggagtccttgtggattaatgtaaccatgcattttggcgtaaccagtggctatgcacgcatgtaaaagttgtatgcatatagccgctgtttggcttacaagaagtgatcctgtctctacttgtgtcctcttttagctaatagcagacctgttgcctcttttgtacattgtttttgataagaagaattcagataggagtataaagtgataaatattgtaatgtctagttaagcagatttccttgagagaccttctggagcactaggacttgtagctttgggttgtagttatatttatatgcaagttgtttttaaatctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="68173" stop="69115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68473" g_stop="68809" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="343" polyA_stop="360"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E232169" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232169" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68473" e_stop="68809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTA</genome_strand>
        <mrna_strand>GTTGGTGTATCAAAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E267598" ref_strand="+" ref_description="SGN-E267598 [cLEI-8-F21]">
      <seq>aactagtctgattttttttttttttttttttttttttttttttttttttgctggcataaatatcatgtaactaccctgttgtatttgaaaaacaggagctacttgacaccagaaatgattaatgtctgcaatgtaccctaaaataactacaactccacctgaacgttgctaatgacttctacaccttaaaatggctctatttattacccctcccctccgtacgattgttttaactcaactattacaagttttcaacatgttgggatctttccgatcacaaaaaatgaatttccacagcctttatttacctgattattgaatccatgacgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="13267" stop="70116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68787" g_stop="68828" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.619"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68829" i_stop="69524" i_length="696">
            <donor d_prob="0.000" d_score="0.62"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69525" g_stop="69816" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="333" r_length="292" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E267598" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68787" e_stop="68828"/>
          <exon e_start="69525" e_stop="69816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTATATGCAAGTTGTTTTTAGCTCTATTTTTATTTTTTAATATAAGGCATATATGAATTATCTCTTCTGTGCAGCCTTAGTTTTTTTTTTTCTTTGAAGAATCCATTGAATTGTTTCTCTCGTTTCATGGTTGTTTATTATGAAAGCAAAATTAGCAATAGAAGTCAAAGGTTTTAAGAAAGAATGTACAACATACCTTATTCTATAAGTGGGGTTTGGAAAAAAGTAGGTTTTATGCATGCCTTTCTACCTTTGTGAGGTATCCGATGCAGTACTGTAAGAAAATAAATAGTAAAATACCTAGATAGAAGCAACAAATAAAACACATCTAAGAATAACTGACTACATGATAGTTGAATATAAATAGTAAAATACCTAGATAGAAGCAACAAATAAAACACATCTAAGAATAACTGACTACATGATAATTGAATACTAGCACCTTCTCTTCACATTTTCGAACAATTTCAGTCTTCACTTCCCTCATCTTGTGATGTCACTCCCATTTTGCCCAGTATACAGAAGAAAAACGTACATTCTGAATAATTTTAGAAGAAAACATGCAACTACATCGTAGATTAAGTTATCTACTGCGTTCTTGAGGAGTAAAACTCAATAGAGTGAATATTTGATTAACTCCTATGTAGTTAAAAATATATATTGTGCTAGCTCAATACATGTAAATATGTAACGAGTATGGTTGGCATCCGTGACGCTGTAAAACAGCAACAATACTTCAAAATGCTGGCATAAATATCATGTAACTACGCTGTTGTATATGAAAAACAGGAGCTACTTGACACCAGAGATGATTAATGTCTGCAATGTACCCTAAAATAACTACAACTCCACCTCAACGTTGCTAATGACTTCTACACCTTAAAATGGCTCTATTTATTACCCCTCCCCTCCGTACGATAGTTTTAACTCAACTATTACAAGTTTACAACATGTTGTGATCTTTCCGATCACAAAAAATGAATTTCCACAGCCTTTATTTAGCTGATTATTGAATCCATGACGTTAA</genome_strand>
        <mrna_strand>AACTAGTCTG-ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTGCTGGCATAAATATCATGTAACTACCCTGTTGTATTTGAAAAACAGGAGCTACTTGACACCAGAAATGATTAATGTCTGCAATGTACCCTAAAATAACTACAACTCCACCTGAACGTTGCTAATGACTTCTACACCTTAAAATGGCTCTATTTATTACCCCTCCCCTCCGTACGATTGTTTTAACTCAACTATTACAAGTTTTCAACATGTTGGGATCTTTCCGATCACAAAAAATGAATTTCCACAGCCTTTATTTACCTGATTATTGAATCCATGACGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E419679" ref_strand="-" ref_description="SGN-E419679 [STM-30-C17]">
      <seq>gatggtcatccgatagcatgtgcccaatcatatgcaaaaaatatggggctatatggccagagagttggttgcctaagtgttgtctgtgaggatgaaaaacaagcagtggcagtgaaaagtcagttgcagcaacttgccaggcccatgtacagtaatccacctgttcacggtgctctgtgttttctaccatccttggagatcccaaactggaaaaattatggctcggggaatgaaagggcatgcctgatcgtatcatcgggatgagaactgctttaagggaaaatcttgagaaagttgggctcacctttatcttgggaacccataaccaaccagattggcatgttctgctccagtgggatgacaccggaacaagtagaccgattgacaaaagagtatcacatctacatgactcgtaatggtcgtatcagtatggcaggagttactactggaaatgttggttacttggcaaacgctattcatgaggttactaaatctgcttaagctttaacatcatggattcaataatcagttacggaaaggctatggaaattcattttttgtgatcggaaagatcacaacatgttgtaatagttgagttaaaacaatcgtactgaggggagggggggaaaatagagccattttaaggggtagaagtcattagcagccgtcgaggtggagttgtagttattttagggtacattacagacattaatcatctagtgtcaaggaactcctgtttttcacatacaacagcgtagttgcatgatatttatgccaacattttgaagtattgttgctattttatggtgtaatggatggaagtaattatgaaaaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="71489" stop="69194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71189" g_stop="71113" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71112" i_stop="70551" i_length="562">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70550" g_stop="70391" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="236" r_length="159" r_score="0.913"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70390" i_stop="70290" i_length="101">
            <donor d_prob="0.934" d_score="0.82"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70289" g_stop="70194" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="333" r_length="97" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70193" i_stop="70100" i_length="94">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.904" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70099" g_stop="70005" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="428" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70004" i_stop="69893" i_length="112">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69892" g_stop="69495" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="817" r_length="389" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E419679" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419679" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71189" e_stop="71113"/>
          <exon e_start="70550" e_stop="70391"/>
          <exon e_start="70289" e_stop="70194"/>
          <exon e_start="70099" e_stop="70005"/>
          <exon e_start="69892" e_stop="69495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAGGTAAAATACTACTCCAAAGATATATTATTTGGCCAAGTTATATCTGGAAAAAAGGGGTAAGGCCTATTTAAATCTTGAGCCGAGGGTGTAAACAGAAACAGTCTCTCTATCTTCACTAGATGTAGGGGTAAGGTTGTATAAGCACCACCCTTACCAAACTTCACTTGTGGGATTACACTGGGAACTGTTCTGTTAAGTTATAATCTGGAGAGTAATACTAATCTTTTGTTAATCATAGTTGATCTATCTTTTAAAATTATCTTCTGATTCCAGAATCAGTAGTACTACCATCTTCATGTAGTTTCTAGATCTATTATTTTCTCTTTCGAATGAACAAAACTTCTGTTGAACTTCGTAAATACATTTAGTAATTGTCTTTATTATACCATATATCATATATTGTGTTATAATAAAACCTCATATTCATCTCTATATAGCGTGTACAAGTCTCTTACTAGTCAGAAAGGACTCCTGTCAAACACTGGTCTGATATTTTTAGTCAATATTTGATAAAGCTAAAAGACTTCCAATGTTTTTGCTGTGGTGCCTCAATTTGCTGCAGTGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGAT-CCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAGGTTAGTTAATGGTGCTCTGGCTGCTCTTTAGCTTGGTACTCGTTTTCAGAACATCATATGTTAAGCGTAAAATTTCAATGACTTAAAGAGTTTTTTTCCAGGGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAG-AAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAGGTATTTGAGATCAACGACTTCCTTCACTTTCTGTAATAGTACGTAACTATAAGAATTCACCTATTGTCCCCTTAATGTTCGATCCTTCCTACAGATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAGGTATAATTATTGAGTCGTCAAGTTCAAGCTTTTAAGCACCTGTATTCGTATAAAAGTTTATATCTGATTGTTTTTTTCCCAATCTATTTCTTTTGCTTCTTGTATGGTGCAGTATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACATGTTGTAAACTTGTAATAGTTGAGTTAAAACTATCGTACGGAGGGGAGGGGTAATAAATAGAGCCATTTTAAGGTGTAGAAGTCATTAGCA-ACGTTGAGGTGGAGTTGTAGTTATTTTAGGGTACATTGCAGACATTAATCATCTCTGGTGTCAAGTAGCTCCTGTTTTTCATATACAACAGCGTAGTTACATGATATTTATGCCAGCATTTTGAAGTATTGTTGCTGTTTTACAGCGTCACGGAT</genome_strand>
        <mrna_strand>GATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGCCAGAGAGTTGGTTGCCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTGTTCACGGTGCTC-TGTGTTTTCTACCATCCTTGGAGATCCCAAACTGGAAAAAT-TATGGCTCGGGGAATGAAAG.....................................................................................................GGCATGCCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGAAAATCTTGAGAAAGTTGGGCTCACCTTTATCTTGGGAACCCATAACCAACCAG..............................................................................................ATTGGCATGTTCTGCTCCAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAG................................................................................................................TATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCTTTAACATCATGGATTCAATAATCAGTTACGGAAAGGCTATGGAAATTCATTTTTTGTGATCGGAAAGATCACAACA---TG-----TTGTAATAGTTGAGTTAAAACAATCGTACTGAGGGGAGGGGGGGAAAATAGAGCCATTTTAAGGGGTAGAAGTCATTAGCAGCCGTCGAGGTGGAGTTGTAGTTATTTTAGGGTACATTACAGACATTAATCA--TCTAGTGTCAAGGAACTCCTGTTTTTCACATACAACAGCGTAGTTGCATGATATTTATGCCAACATTTTGAAGTATTGTTGCTATTTTATGGTGTAATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E350047" ref_strand="+" ref_description="SGN-E350047 [cTOS-4-D15]">
      <seq>tccacctcttcatggtgctcttgttgtttctacaatccttggagatccaaacttgaaaactctatggctcggggaagtgaagggcatggctgatcgtatcatcgggatgagaactgctttaaggggaaatcttgagaagttgggctcacctctatcttgggaacacataaccaaccagattggcatgttctgctacagtgggatgacaccggaacaagtagaccgattgacaaaagagtatcacatctacatgactcgtaatggtcgtatcagtatggcaggagttactactggaaatgttggttacttggcaaacgctattcatgaggttactaaatctgcttaagcgttaacgtcatggattcaataatcagctaaataaaggctgtggaaattcattttttgtgatcggaaagatcacaacatgttgtaaacttgtaatagttgagttaaaactatcgtacggaggggaggggtaataaatagagccattttaaggtgtagaagtcattagcaacgttgaggtggagttgtagttattttagggtacattgcagacattaatcatctctggtgtcaagtagctcctgtttttcatatacaacagcgtagttacatgatatttatgcccagcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="70772" stop="69232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70472" g_stop="70391" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70390" i_stop="70290" i_length="101">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70289" g_stop="70194" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="178" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70193" i_stop="70100" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70099" g_stop="70005" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="273" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70004" i_stop="69893" i_length="112">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69892" g_stop="69524" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="643" r_length="370" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E350047" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70472" e_stop="70391"/>
          <exon e_start="70289" e_stop="70194"/>
          <exon e_start="70099" e_stop="70005"/>
          <exon e_start="69892" e_stop="69524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAGGTTAGTTAATGGTGCTCTGGCTGCTCTTTAGCTTGGTACTCGTTTTCAGAACATCATATGTTAAGCGTAAAATTTCAATGACTTAAAGAGTTTTTTTCCAGGGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAGGTATTTGAGATCAACGACTTCCTTCACTTTCTGTAATAGTACGTAACTATAAGAATTCACCTATTGTCCCCTTAATGTTCGATCCTTCCTACAGATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAGGTATAATTATTGAGTCGTCAAGTTCAAGCTTTTAAGCACCTGTATTCGTATAAAAGTTTATATCTGATTGTTTTTTTCCCAATCTATTTCTTTTGCTTCTTGTATGGTGCAGTATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACATGTTGTAAACTTGTAATAGTTGAGTTAAAACTATCGTACGGAGGGGAGGGGTAATAAATAGAGCCATTTTAAGGTGTAGAAGTCATTAGCAACGTTGAGGTGGAGTTGTAGTTATTTTAGGGTACATTGCAGACATTAATCATCTCTGGTGTCAAGTAGCTCCTGTTTTTCATATACAACAGCGTAGTTACATGATATTTATG-CCAGCATTTTGAAG</genome_strand>
        <mrna_strand>TCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAG.....................................................................................................GGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAG..............................................................................................ATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAG................................................................................................................TATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACATGTTGTAAACTTGTAATAGTTGAGTTAAAACTATCGTACGGAGGGGAGGGGTAATAAATAGAGCCATTTTAAGGTGTAGAAGTCATTAGCAACGTTGAGGTGGAGTTGTAGTTATTTTAGGGTACATTGCAGACATTAATCATCTCTGGTGTCAAGTAGCTCCTGTTTTTCATATACAACAGCGTAGTTACATGATATTTATGCCCAGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E349470" ref_strand="+" ref_description="SGN-E349470 [cTOS-1-A7]">
      <seq>tccacctcttcatggtgctcttgttgtttctacaatccttggagatccaaacttgaaaactctatggctcggggaagtgaagggcatggctgatcgtatcatcgggatgagaactgctttaaggggaaatcttgagaagttgggctcacctctatcttgggaacacataaccaaccagattggcatgttctgctacagtgggatgacaccggaacaagtagaccgattgacaaaagagtatcacatctacatgactcgtaatggtcgtatcagtatggcaggagttactactggaaatgttggttacttggcaaacgctattcatgaggttactaaatctgcttaagcgttaacgtcatggattcaataatcagctaaataaaggctgtggaaattcattttttgtgatcggaaagatcacaacatgttgtaaacttgtaatagttgagttaaaactatcgtacggaggggaggggtaataaatagagccattttaaggtgtagaagtcattagcaacgttgaggtggagttgtagttattttagggtacattgcagacattaatcatctctggtgtcaagtagctcctgtttttcatatacaacagcgtagttacatgatatttatgccagcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="70772" stop="69232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70472" g_stop="70391" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70390" i_stop="70290" i_length="101">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70289" g_stop="70194" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="178" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70193" i_stop="70100" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70099" g_stop="70005" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="273" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70004" i_stop="69893" i_length="112">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69892" g_stop="69526" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="640" r_length="367" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E349470" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70472" e_stop="70391"/>
          <exon e_start="70289" e_stop="70194"/>
          <exon e_start="70099" e_stop="70005"/>
          <exon e_start="69892" e_stop="69526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAGGTTAGTTAATGGTGCTCTGGCTGCTCTTTAGCTTGGTACTCGTTTTCAGAACATCATATGTTAAGCGTAAAATTTCAATGACTTAAAGAGTTTTTTTCCAGGGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAGGTATTTGAGATCAACGACTTCCTTCACTTTCTGTAATAGTACGTAACTATAAGAATTCACCTATTGTCCCCTTAATGTTCGATCCTTCCTACAGATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAGGTATAATTATTGAGTCGTCAAGTTCAAGCTTTTAAGCACCTGTATTCGTATAAAAGTTTATATCTGATTGTTTTTTTCCCAATCTATTTCTTTTGCTTCTTGTATGGTGCAGTATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACATGTTGTAAACTTGTAATAGTTGAGTTAAAACTATCGTACGGAGGGGAGGGGTAATAAATAGAGCCATTTTAAGGTGTAGAAGTCATTAGCAACGTTGAGGTGGAGTTGTAGTTATTTTAGGGTACATTGCAGACATTAATCATCTCTGGTGTCAAGTAGCTCCTGTTTTTCATATACAACAGCGTAGTTACATGATATTTATGCCAGCATTTTGA</genome_strand>
        <mrna_strand>TCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAG.....................................................................................................GGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAG..............................................................................................ATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAG................................................................................................................TATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACATGTTGTAAACTTGTAATAGTTGAGTTAAAACTATCGTACGGAGGGGAGGGGTAATAAATAGAGCCATTTTAAGGTGTAGAAGTCATTAGCAACGTTGAGGTGGAGTTGTAGTTATTTTAGGGTACATTGCAGACATTAATCATCTCTGGTGTCAAGTAGCTCCTGTTTTTCATATACAACAGCGTAGTTACATGATATTTATGCCAGCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E218124" ref_strand="-" ref_description="SGN-E218124 [cLEL-23-B10]">
      <seq>gtatcacatctacatgactcgtaatggtcgtatcagtatggcaggagttactactggaaatgttggtnacttggcaaacgctattcatgaggttactaaatctgcttaagcgttaacgtcatggattcaataatcagctaaataaaggctgtggaaattcattttttgtgatcggaaagatcacaacatgttgtaaacttgtaatagttgagttaaaactatcgtacggaggggaggggtaataaatagagccattttaaggtgtagaagtcattagcaacgttgaggtggagttgtagttattttagggtacattgcagacattaatcatctctggtgtcaagtagctcctgtttttcatatacaacagcgtagttacatgatatttatgccagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="70340" stop="69232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70040" g_stop="70005" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70004" i_stop="69893" i_length="112">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69892" g_stop="69533" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="396" r_length="360" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="413"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E218124" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218124" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70040" e_stop="70005"/>
          <exon e_start="69892" e_stop="69533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCACATCTACATGACTCGTAATGGTCGTATCAGGTATAATTATTGAGTCGTCAAGTTCAAGCTTTTAAGCACCTGTATTCGTATAAAAGTTTATATCTGATTGTTTTTTTCCCAATCTATTTCTTTTGCTTCTTGTATGGTGCAGTATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACATGTTGTAAACTTGTAATAGTTGAGTTAAAACTATCGTACGGAGGGGAGGGGTAATAAATAGAGCCATTTTAAGGTGTAGAAGTCATTAGCAACGTTGAGGTGGAGTTGTAGTTATTTTAGGGTACATTGCAGACATTAATCATCTCTGGTGTCAAGTAGCTCCTGTTTTTCATATACAACAGCGTAGTTACATGATATTTATGCCAGC</genome_strand>
        <mrna_strand>GTATCACATCTACATGACTCGTAATGGTCGTATCAG................................................................................................................TATGGCAGGAGTTACTACTGGAAATGTTGGTNACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACATGTTGTAAACTTGTAATAGTTGAGTTAAAACTATCGTACGGAGGGGAGGGGTAATAAATAGAGCCATTTTAAGGTGTAGAAGTCATTAGCAACGTTGAGGTGGAGTTGTAGTTATTTTAGGGTACATTGCAGACATTAATCATCTCTGGTGTCAAGTAGCTCCTGTTTTTCATATACAACAGCGTAGTTACATGATATTTATGCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E413000" ref_strand="-" ref_description="SGN-E413000 [STM-17-M5]">
      <seq>ggaacacataaccaaccagattggcatgttctgctacagtgggatgacaccggaacaagtagaccgattgacaaaagagtatcacatctacatgactcgtaatggtcgtatcagtatggcaggagttactactggaaatgttggttacttggcaaacgctattcatgaggttactaaatctgcttaagctttaacatcatggattcaataatcagctacggaaaggctgtggaaattcattttttgtgatcggaaagatcacaacatgttgtaatagttgagttaaaacaatcgtactgaggggaggggggaataaatagaaccattttaaggggtagaagtcattagcagccgtcgaggtggagttgtagttattttagggtacattacagacattaatcatctctagtgtcaaggatctgctgtttttcatatacaacagcgtagttacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="70512" stop="69246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70212" g_stop="70194" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70193" i_stop="70100" i_length="94">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70099" g_stop="70005" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="114" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70004" i_stop="69893" i_length="112">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69892" g_stop="69546" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="455" r_length="341" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E413000" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413000" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70212" e_stop="70194"/>
          <exon e_start="70099" e_stop="70005"/>
          <exon e_start="69892" e_stop="69546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACACATAACCAACCAGGTATTTGAGATCAACGACTTCCTTCACTTTCTGTAATAGTACGTAACTATAAGAATTCACCTATTGTCCCCTTAATGTTCGATCCTTCCTACAGATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAGGTATAATTATTGAGTCGTCAAGTTCAAGCTTTTAAGCACCTGTATTCGTATAAAAGTTTATATCTGATTGTTTTTTTCCCAATCTATTTCTTTTGCTTCTTGTATGGTGCAGTATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACATGTTGTAAACTTGTAATAGTTGAGTTAAAACTATCGTACGGAGGGGA-GGGGTAATAAATAGAGCCATTTTAAGGTGTAGAAGTCATTAGCA-ACGTTGAGGTGGAGTTGTAGTTATTTTAGGGTACATTGCAGACATTAATCATCTCTGGTGTCAAGTAGCTCCTGTTTTTCATATACAACAGCGTAGTTACATGA</genome_strand>
        <mrna_strand>GGAACACATAACCAACCAG..............................................................................................ATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAG................................................................................................................TATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCTTTAACATCATGGATTCAATAATCAGCTACGGAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACA---TG-----TTGTAATAGTTGAGTTAAAACAATCGTACTGAGGGGAGGGGGGAATAAATAGAACCATTTTAAGGGGTAGAAGTCATTAGCAGCCGTCGAGGTGGAGTTGTAGTTATTTTAGGGTACATTACAGACATTAATCATCTCTAGTGTCAAGGATCTGCTGTTTTTCATATACAACAGCGTAGTTACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E310732" ref_strand="+" ref_description="SGN-E310732 [cLEZ-15-I6]">
      <seq>aaaactctatggctcggggaagtgaagggcatggctgatcgtatcatcgggatgagaactgctttaaggggaaatcttgagaagttgggctcacctctatcttgggaacacataaccaaccagattggcatgttctgctacagtgggatgacaccggaacaagtagaccgattgacaaaagagtatcacatctacatgactcgtaatggtcgtatcactatggcaggagttactactggaaatgttggttacttggcaaacgctattcatgaggttactaaatctgcttaagcgttaacgtcatggattcaataatcagctaaataaaggctgtggaaattcattttttgtgatcggaaagatcacaacatgttgtaaacttgtaatagttgagttaaaactatcgtacggaggggaggggtaataaatagagccattttaaggtgtagaagtcattagcaacgttgaggtggagttgtagttattttaaggtacattgcagacattaatcatctctggtgtcaagtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="70717" stop="69281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70417" g_stop="70391" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70390" i_stop="70290" i_length="101">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70289" g_stop="70194" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="123" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70193" i_stop="70100" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70099" g_stop="70005" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="218" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70004" i_stop="69893" i_length="112">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69892" g_stop="69581" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="530" r_length="312" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E310732" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70417" e_stop="70391"/>
          <exon e_start="70289" e_stop="70194"/>
          <exon e_start="70099" e_stop="70005"/>
          <exon e_start="69892" e_stop="69581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCTATGGCTCGGGGAAGTGAAGGTTAGTTAATGGTGCTCTGGCTGCTCTTTAGCTTGGTACTCGTTTTCAGAACATCATATGTTAAGCGTAAAATTTCAATGACTTAAAGAGTTTTTTTCCAGGGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAGGTATTTGAGATCAACGACTTCCTTCACTTTCTGTAATAGTACGTAACTATAAGAATTCACCTATTGTCCCCTTAATGTTCGATCCTTCCTACAGATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAGGTATAATTATTGAGTCGTCAAGTTCAAGCTTTTAAGCACCTGTATTCGTATAAAAGTTTATATCTGATTGTTTTTTTCCCAATCTATTTCTTTTGCTTCTTGTATGGTGCAGTATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACATGTTGTAAACTTGTAATAGTTGAGTTAAAACTATCGTACGGAGGGGAGGGGTAATAAATAGAGCCATTTTAAGGTGTAGAAGTCATTAGCAACGTTGAGGTGGAGTTGTAGTTATTTTAGGGTACATTGCAGACATTAATCATCTCTGGTGTCAAGTAGC</genome_strand>
        <mrna_strand>AAAACTCTATGGCTCGGGGAAGTGAAG.....................................................................................................GGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAG..............................................................................................ATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAC................................................................................................................TATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACATGTTGTAAACTTGTAATAGTTGAGTTAAAACTATCGTACGGAGGGGAGGGGTAATAAATAGAGCCATTTTAAGGTGTAGAAGTCATTAGCAACGTTGAGGTGGAGTTGTAGTTATTTTAAGGTACATTGCAGACATTAATCATCTCTGGTGTCAAGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E346546" ref_strand="+" ref_description="SGN-E346546 [cTOF-28-C22]">
      <seq>tcatatgcaaaaaatatggggctatatggtcagagagttggttgcctaagtgttgtctgtgaggatgaaaaacaagcagtggcagtgaaaagtcagttgcagcaacttgccaggcccatgtacagtaatccacctcttcatggtgctcttgttgtttctacaatccttggagatccaaacttgaaaactctatggctcggggaagtgaagggcatggctgatcgtatcatcgggatgagaactgctttaaggggaaatcttgagaagttgggctcacctctatcttgggaacacataaccaaccagattggcatgttctgctacagtgggatgacaccggaacaagtagaccgattgacaaaagagtatcacatctacatgactcgtaatggtcgtatcagtatggcaggagttactactggaaatgttggttacttggcaaacgctattcatgaggttactaaatctgctnaagcgttaacgtcatggattcaataatcagctaaataaagctgtggaaattcattntttgtgatcggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="71462" stop="69452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71162" g_stop="71113" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71112" i_stop="70551" i_length="562">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70550" g_stop="70391" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="210" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70390" i_stop="70290" i_length="101">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70289" g_stop="70194" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="306" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70193" i_stop="70100" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70099" g_stop="70005" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="401" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70004" i_stop="69893" i_length="112">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69892" g_stop="69752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="541" r_length="140" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E346546" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71162" e_stop="71113"/>
          <exon e_start="70550" e_stop="70391"/>
          <exon e_start="70289" e_stop="70194"/>
          <exon e_start="70099" e_stop="70005"/>
          <exon e_start="69892" e_stop="69752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAGGTAAAATACTACTCCAAAGATATATTATTTGGCCAAGTTATATCTGGAAAAAAGGGGTAAGGCCTATTTAAATCTTGAGCCGAGGGTGTAAACAGAAACAGTCTCTCTATCTTCACTAGATGTAGGGGTAAGGTTGTATAAGCACCACCCTTACCAAACTTCACTTGTGGGATTACACTGGGAACTGTTCTGTTAAGTTATAATCTGGAGAGTAATACTAATCTTTTGTTAATCATAGTTGATCTATCTTTTAAAATTATCTTCTGATTCCAGAATCAGTAGTACTACCATCTTCATGTAGTTTCTAGATCTATTATTTTCTCTTTCGAATGAACAAAACTTCTGTTGAACTTCGTAAATACATTTAGTAATTGTCTTTATTATACCATATATCATATATTGTGTTATAATAAAACCTCATATTCATCTCTATATAGCGTGTACAAGTCTCTTACTAGTCAGAAAGGACTCCTGTCAAACACTGGTCTGATATTTTTAGTCAATATTTGATAAAGCTAAAAGACTTCCAATGTTTTTGCTGTGGTGCCTCAATTTGCTGCAGTGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAGGTTAGTTAATGGTGCTCTGGCTGCTCTTTAGCTTGGTACTCGTTTTCAGAACATCATATGTTAAGCGTAAAATTTCAATGACTTAAAGAGTTTTTTTCCAGGGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAGGTATTTGAGATCAACGACTTCCTTCACTTTCTGTAATAGTACGTAACTATAAGAATTCACCTATTGTCCCCTTAATGTTCGATCCTTCCTACAGATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAGGTATAATTATTGAGTCGTCAAGTTCAAGCTTTTAAGCACCTGTATTCGTATAAAAGTTTATATCTGATTGTTTTTTTCCCAATCTATTTCTTTTGCTTCTTGTATGGTGCAGTATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAA</genome_strand>
        <mrna_strand>TCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAG.....................................................................................................GGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAG..............................................................................................ATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAG................................................................................................................TATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTNAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAA-GCTGTGGAAATTCATTNTTTGTGATCGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E453539" ref_strand="+" ref_description="SGN-E453539 [cSTS-20-G18]">
      <seq>caaaaggatcattctttctgcttcatgcttgtgctcataatcctactggggtggatccgacagaggaacaatggagggagatctcgcaccagttcaaggtgaagggacattttgctttgtttgatatggcctatcaaggatttgcaagtgggtatccagagaaggatgctaaggcaatcaggatatttcttgaggatggtcatccgatagcgtgtgcccaatcatatgcaaaaaatatggggctatatggccagagagttggttgcctaagtgttgtctgtgaggatgaaaaacaagcagtggcagtgaaaagtcagttgcagcaacttgccaggcccatgtacagtaatccacctgttcatggtgctcttgttgtttctaccatccttggagatccaaacttgaaaaatctatggctcggggaagtgaagggcatggctgatcgtatcatcgggatgagaactgctttaagggaaaatcttgagaagttgggctcacctctatcttgggaacacataaccaaccagattggcatgttctgctacagtgggatgacaccggaacaagtagaccgattgacaaaagagtatcacatctacatgactcgntatggtcgtatcagtatggcaggagttactactgggaatgttggttacttggcaaacgctattcatgaggttactaaatctgcttaagctttacatcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="71753" stop="69504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71453" g_stop="71356" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71285" g_stop="71113" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="271" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71112" i_stop="70551" i_length="562">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70550" g_stop="70391" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="431" r_length="160" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70390" i_stop="70290" i_length="101">
            <donor d_prob="0.934" d_score="0.96"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70289" g_stop="70194" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="527" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70193" i_stop="70100" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70099" g_stop="70005" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="622" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70004" i_stop="69893" i_length="112">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69892" g_stop="69804" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="710" r_length="88" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E453539" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71453" e_stop="71356"/>
          <exon e_start="71285" e_stop="71113"/>
          <exon e_start="70550" e_stop="70391"/>
          <exon e_start="70289" e_stop="70194"/>
          <exon e_start="70099" e_stop="70005"/>
          <exon e_start="69892" e_stop="69804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAGGTAATGACTTGTATATTTTTATCCTCTTTCTTGTCATAAGTCTCATATTGAATTATTGCACTGGTTCTAGGTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAGGTAAAATACTACTCCAAAGATATATTATTTGGCCAAGTTATATCTGGAAAAAAGGGGTAAGGCCTATTTAAATCTTGAGCCGAGGGTGTAAACAGAAACAGTCTCTCTATCTTCACTAGATGTAGGGGTAAGGTTGTATAAGCACCACCCTTACCAAACTTCACTTGTGGGATTACACTGGGAACTGTTCTGTTAAGTTATAATCTGGAGAGTAATACTAATCTTTTGTTAATCATAGTTGATCTATCTTTTAAAATTATCTTCTGATTCCAGAATCAGTAGTACTACCATCTTCATGTAGTTTCTAGATCTATTATTTTCTCTTTCGAATGAACAAAACTTCTGTTGAACTTCGTAAATACATTTAGTAATTGTCTTTATTATACCATATATCATATATTGTGTTATAATAAAACCTCATATTCATCTCTATATAGCGTGTACAAGTCTCTTACTAGTCAGAAAGGACTCCTGTCAAACACTGGTCTGATATTTTTAGTCAATATTTGATAAAGCTAAAAGACTTCCAATGTTTTTGCTGTGGTGCCTCAATTTGCTGCAGTGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAGGTTAGTTAATGGTGCTCTGGCTGCTCTTTAGCTTGGTACTCGTTTTCAGAACATCATATGTTAAGCGTAAAATTTCAATGACTTAAAGAGTTTTTTTCCAGGGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAGGTATTTGAGATCAACGACTTCCTTCACTTTCTGTAATAGTACGTAACTATAAGAATTCACCTATTGTCCCCTTAATGTTCGATCCTTCCTACAGATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAGGTATAATTATTGAGTCGTCAAGTTCAAGCTTTTAAGCACCTGTATTCGTATAAAAGTTTATATCTGATTGTTTTTTTCCCAATCTATTTCTTTTGCTTCTTGTATGGTGCAGTATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGA</genome_strand>
        <mrna_strand>CAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAG......................................................................GTGAAGGGACATTTTGCTTTGTTTGATATGGCCTATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAGGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCGTGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGCCAGAGAGTTGGTTGCCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTGTTCATGGTGCTCTTGTTGTTTCTACCATCCTTGGAGATCCAAACTTGAAAAATCTATGGCTCGGGGAAGTGAAG.....................................................................................................GGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGAAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAG..............................................................................................ATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGNTATGGTCGTATCAG................................................................................................................TATGGCAGGAGTTACTACTGGGAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGC-TTTACATCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E251131" ref_strand="+" ref_description="SGN-E251131 [cLEG-10-K11]">
      <seq>atatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatgcttgtgctcataatcctactggggtggatccgacagaggaacaatggagggagatctcgcaccagttcaaggtgaagggacattttgctttgtttgacatggcatatcaaggatttgcaagtgggtatccagagaaggatgctaaagcaatcaggatatttcttgaggatggtcatccgatagcatgtgcccaatcatatgcaaaaaatatggggctatatggtcagagagttggttgcctaagtgttgtctgtgaggatgaaaaacaagcagtggcagtgaaaagtcagttgcagcaacttgccaggcccatgtacagtaatccacctcttcatggtgctcttgttgtttctacaatccttggagatccaaacttgaaaactctatggctcggggaagtgaagggcatggctgatcgtatcatcgggatgagaactgctttaaggggaaatcttgagaagtggggctcacctctatctttggaacacataaccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="71938" stop="69897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71638" g_stop="71575" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71460" g_stop="71356" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="169" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71285" g_stop="71113" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="342" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71112" i_stop="70551" i_length="562">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70550" g_stop="70391" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="502" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70390" i_stop="70290" i_length="101">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70289" g_stop="70197" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="595" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E251131" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71638" e_stop="71575"/>
          <exon e_start="71460" e_stop="71356"/>
          <exon e_start="71285" e_stop="71113"/>
          <exon e_start="70550" e_stop="70391"/>
          <exon e_start="70289" e_stop="70197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAGGTAATGACTTGTATATTTTTATCCTCTTTCTTGTCATAAGTCTCATATTGAATTATTGCACTGGTTCTAGGTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAGGTAAAATACTACTCCAAAGATATATTATTTGGCCAAGTTATATCTGGAAAAAAGGGGTAAGGCCTATTTAAATCTTGAGCCGAGGGTGTAAACAGAAACAGTCTCTCTATCTTCACTAGATGTAGGGGTAAGGTTGTATAAGCACCACCCTTACCAAACTTCACTTGTGGGATTACACTGGGAACTGTTCTGTTAAGTTATAATCTGGAGAGTAATACTAATCTTTTGTTAATCATAGTTGATCTATCTTTTAAAATTATCTTCTGATTCCAGAATCAGTAGTACTACCATCTTCATGTAGTTTCTAGATCTATTATTTTCTCTTTCGAATGAACAAAACTTCTGTTGAACTTCGTAAATACATTTAGTAATTGTCTTTATTATACCATATATCATATATTGTGTTATAATAAAACCTCATATTCATCTCTATATAGCGTGTACAAGTCTCTTACTAGTCAGAAAGGACTCCTGTCAAACACTGGTCTGATATTTTTAGTCAATATTTGATAAAGCTAAAAGACTTCCAATGTTTTTGCTGTGGTGCCTCAATTTGCTGCAGTGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAGGTTAGTTAATGGTGCTCTGGCTGCTCTTTAGCTTGGTACTCGTTTTCAGAACATCATATGTTAAGCGTAAAATTTCAATGACTTAAAGAGTTTTTTTCCAGGGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAAC</genome_strand>
        <mrna_strand>ATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAG......................................................................GTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAG.....................................................................................................GGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTGGGGCTCACCTCTATCTTTGGAACACATAACCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E251313" ref_strand="+" ref_description="SGN-E251313 [cLEG-10-L20]">
      <seq>gcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcacgtccctgagaaaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatgcttgtgctcataatcctactggggtggatccgacagaggaacaatggagggagatctcgcaccagttcaaggtgaagggacattttgctttgtttgacatggcatatcaaggatttgcaagtgggtatccagagaaggatgctaaagcaatcaggatatttcttgaggatggtcatccgatagcatgtgcccaatcatatgcaaaaaatatggggctatatggtcagagagttggttgcctaagtgttgtctgtgaggatgaaaaacaagcagtggcagtgaaaagtcagttgcagcaacttgccaggcccatgtacagtaatccacctcttcatggtgctcttgttgtttctacaatccttggagatccaaacttgaaaactctatggctcggggaagtgaagggcatggctgatcgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="72168" stop="69972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71868" g_stop="71804" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="171" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71460" g_stop="71356" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="276" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71285" g_stop="71113" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="449" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71112" i_stop="70551" i_length="562">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70550" g_stop="70391" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="609" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70390" i_stop="70290" i_length="101">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70289" g_stop="70272" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="627" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E251313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71868" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71356"/>
          <exon e_start="71285" e_stop="71113"/>
          <exon e_start="70550" e_stop="70391"/>
          <exon e_start="70289" e_stop="70272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAGGTAATGACTTGTATATTTTTATCCTCTTTCTTGTCATAAGTCTCATATTGAATTATTGCACTGGTTCTAGGTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAGGTAAAATACTACTCCAAAGATATATTATTTGGCCAAGTTATATCTGGAAAAAAGGGGTAAGGCCTATTTAAATCTTGAGCCGAGGGTGTAAACAGAAACAGTCTCTCTATCTTCACTAGATGTAGGGGTAAGGTTGTATAAGCACCACCCTTACCAAACTTCACTTGTGGGATTACACTGGGAACTGTTCTGTTAAGTTATAATCTGGAGAGTAATACTAATCTTTTGTTAATCATAGTTGATCTATCTTTTAAAATTATCTTCTGATTCCAGAATCAGTAGTACTACCATCTTCATGTAGTTTCTAGATCTATTATTTTCTCTTTCGAATGAACAAAACTTCTGTTGAACTTCGTAAATACATTTAGTAATTGTCTTTATTATACCATATATCATATATTGTGTTATAATAAAACCTCATATTCATCTCTATATAGCGTGTACAAGTCTCTTACTAGTCAGAAAGGACTCCTGTCAAACACTGGTCTGATATTTTTAGTCAATATTTGATAAAGCTAAAAGACTTCCAATGTTTTTGCTGTGGTGCCTCAATTTGCTGCAGTGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAGGTTAGTTAATGGTGCTCTGGCTGCTCTTTAGCTTGGTACTCGTTTTCAGAACATCATATGTTAAGCGTAAAATTTCAATGACTTAAAGAGTTTTTTTCCAGGGCATGGCTGATCGTATC</genome_strand>
        <mrna_strand>GCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAG......................................................................GTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAG.....................................................................................................GGCATGGCTGATCGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E731924" ref_strand="+" ref_description="SGN-E731924 [LA28CD01]">
      <seq>gagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatagctggtggtttcaatatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggagagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaacaggcgcatgcagaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcacgtccctgagaaaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatgcttgtgctcataatcctactggggtggatccgacagaggaacaatggagggagatctcgcaccagttcaaggtgaagggacattttgctttgtttgacatggcatatcaaggatttgcaagtgggtatccagagaaggatgctaaagcaatcaggatatttcttgaggatggtcatccgatagcatgtgcccaatcatatgcaaaaaatatggggctatatggtcagagagttggttgcctaagtgttgtctgtgaggatgaaaaacaagcagtggcagtgaaaagtcagttgcagcaacttgccaggcccatgtacagtaatccacctcttcatggtgctcttgttgtttctacaatccttggagatccaaacttgaaaactctatggctcgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="73500" stop="70099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73200" g_stop="73116" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="292" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="398" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71460" g_stop="71356" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="503" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71285" g_stop="71113" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="676" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71112" i_stop="70551" i_length="562">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70550" g_stop="70399" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="828" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E731924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73200" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71356"/>
          <exon e_start="71285" e_stop="71113"/>
          <exon e_start="70550" e_stop="70399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAGGTAATGACTTGTATATTTTTATCCTCTTTCTTGTCATAAGTCTCATATTGAATTATTGCACTGGTTCTAGGTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAGGTAAAATACTACTCCAAAGATATATTATTTGGCCAAGTTATATCTGGAAAAAAGGGGTAAGGCCTATTTAAATCTTGAGCCGAGGGTGTAAACAGAAACAGTCTCTCTATCTTCACTAGATGTAGGGGTAAGGTTGTATAAGCACCACCCTTACCAAACTTCACTTGTGGGATTACACTGGGAACTGTTCTGTTAAGTTATAATCTGGAGAGTAATACTAATCTTTTGTTAATCATAGTTGATCTATCTTTTAAAATTATCTTCTGATTCCAGAATCAGTAGTACTACCATCTTCATGTAGTTTCTAGATCTATTATTTTCTCTTTCGAATGAACAAAACTTCTGTTGAACTTCGTAAATACATTTAGTAATTGTCTTTATTATACCATATATCATATATTGTGTTATAATAAAACCTCATATTCATCTCTATATAGCGTGTACAAGTCTCTTACTAGTCAGAAAGGACTCCTGTCAAACACTGGTCTGATATTTTTAGTCAATATTTGATAAAGCTAAAAGACTTCCAATGTTTTTGCTGTGGTGCCTCAATTTGCTGCAGTGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGG</genome_strand>
        <mrna_strand>GAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAG......................................................................GTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E373017" ref_strand="+" ref_description="SGN-E373017 [TUS-32-L13]">
      <seq>tcaacatgatccaggagtcgctgaagttagcctatggagagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaacaggcgcatgcagaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcacgtccctgagaaaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatgcttgtgctcataatcctactggggtggatccgacagaggaacaatggagggagatctcgcaccagttcaaggtgaagggacattttgctttgtttgacatggcatatcaaggatttgcaagtgggtatccagagaaggatgctaaagcaatcaggatatttcttgaggatggtcatccgatagcatgtgcccaatcatatgcaaaaaatatggggctatatggtcagagagttggttgcctaagtgttgtctgtgaggatgaaaaacaagcagtggcagtgaaaagtcagttgcagcaacttgccaggcccatgtacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="72284" stop="70175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71984" g_stop="71804" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="287" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71460" g_stop="71356" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="392" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71285" g_stop="71113" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="565" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71112" i_stop="70551" i_length="562">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70550" g_stop="70475" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="641" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E373017" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71984" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71356"/>
          <exon e_start="71285" e_stop="71113"/>
          <exon e_start="70550" e_stop="70475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAGGTAATGACTTGTATATTTTTATCCTCTTTCTTGTCATAAGTCTCATATTGAATTATTGCACTGGTTCTAGGTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAGGTAAAATACTACTCCAAAGATATATTATTTGGCCAAGTTATATCTGGAAAAAAGGGGTAAGGCCTATTTAAATCTTGAGCCGAGGGTGTAAACAGAAACAGTCTCTCTATCTTCACTAGATGTAGGGGTAAGGTTGTATAAGCACCACCCTTACCAAACTTCACTTGTGGGATTACACTGGGAACTGTTCTGTTAAGTTATAATCTGGAGAGTAATACTAATCTTTTGTTAATCATAGTTGATCTATCTTTTAAAATTATCTTCTGATTCCAGAATCAGTAGTACTACCATCTTCATGTAGTTTCTAGATCTATTATTTTCTCTTTCGAATGAACAAAACTTCTGTTGAACTTCGTAAATACATTTAGTAATTGTCTTTATTATACCATATATCATATATTGTGTTATAATAAAACCTCATATTCATCTCTATATAGCGTGTACAAGTCTCTTACTAGTCAGAAAGGACTCCTGTCAAACACTGGTCTGATATTTTTAGTCAATATTTGATAAAGCTAAAAGACTTCCAATGTTTTTGCTGTGGTGCCTCAATTTGCTGCAGTGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGT</genome_strand>
        <mrna_strand>TCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAG......................................................................GTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E702794" ref_strand="+" ref_description="SGN-E702794 [FA19CH05]">
      <seq>ccgctatttccggtcgtcaactaaaacttagctcgtcgtcgttcggtgcgcgatccctgtcgtcgtggtggcgaaatgttgaaccggctcctaaagatcctatcctcggcgtaactgaagcttttctcgccgatcctagccctgacaaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatagctggtggtttcaatatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggagagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaacaggcgcatgcagaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcacgtccctgagaaaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatgcttgtgctcataatcctactggggtggatccgacagaggaacaatggagggagatctcgcaccagttcaaggtgaagggacattttgctttgtttgacatggcatatcaaggatttgcaagtgggtatccagagaaggatgctaaagcaatcaggatatttcttgaggatggtcatccgatagcatgtgcccaatcatatgcaaaaaatatggggctatatggtcagagagttggttgcctaagtgttgtctgtgaggatgaaaaacaagcagtggcagtgaaaagtcagttgcagcaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74026" stop="70193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73726" g_stop="73563" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="250" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="457" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="563" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71356" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="668" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71285" g_stop="71113" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="841" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71112" i_stop="70551" i_length="562">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70550" g_stop="70493" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="899" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E702794" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73726" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71356"/>
          <exon e_start="71285" e_stop="71113"/>
          <exon e_start="70550" e_stop="70493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAGGTAATGACTTGTATATTTTTATCCTCTTTCTTGTCATAAGTCTCATATTGAATTATTGCACTGGTTCTAGGTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAGGTAAAATACTACTCCAAAGATATATTATTTGGCCAAGTTATATCTGGAAAAAAGGGGTAAGGCCTATTTAAATCTTGAGCCGAGGGTGTAAACAGAAACAGTCTCTCTATCTTCACTAGATGTAGGGGTAAGGTTGTATAAGCACCACCCTTACCAAACTTCACTTGTGGGATTACACTGGGAACTGTTCTGTTAAGTTATAATCTGGAGAGTAATACTAATCTTTTGTTAATCATAGTTGATCTATCTTTTAAAATTATCTTCTGATTCCAGAATCAGTAGTACTACCATCTTCATGTAGTTTCTAGATCTATTATTTTCTCTTTCGAATGAACAAAACTTCTGTTGAACTTCGTAAATACATTTAGTAATTGTCTTTATTATACCATATATCATATATTGTGTTATAATAAAACCTCATATTCATCTCTATATAGCGTGTACAAGTCTCTTACTAGTCAGAAAGGACTCCTGTCAAACACTGGTCTGATATTTTTAGTCAATATTTGATAAAGCTAAAAGACTTCCAATGTTTTTGCTGTGGTGCCTCAATTTGCTGCAGTGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTT</genome_strand>
        <mrna_strand>CCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGTGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAG......................................................................GTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E703549" ref_strand="+" ref_description="SGN-E703549 [FA21DC06]">
      <seq>ggcgatgcgtgccgctatttccggtcgtcaactaaaacttagctcgtcgtcgttcggagcgcgatccctgtcgtcgtggtggcgaaatgttgaaccggctcctaaagatcctatcctcggcgtaactgaagcttttctcgccgatcctagccctgacaaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatagctggtggtttcaatatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggagagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaacaggcgcatgcagaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcacgtccctgagaaaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatgcttgtgctcataatcctactggggtggatccgacagaggaacaatggagggagatctcgcaccagttcaaggtgaagggacattttgctttgtttgacatggcatatcaaggatttgcaagtgggtatccagagaaggatgctaaagcaatcangatatttcttgaggatggtcatccgatagcatgtgcccaatcatatgcaaaaaatatggggctatatggtcagagagnttgttgcctaagtgttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74037" stop="70811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73737" g_stop="73563" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="261" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="468" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="574" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71356" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="679" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71285" g_stop="71113" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="852" r_length="173" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E703549" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73737" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71356"/>
          <exon e_start="71285" e_stop="71113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAGGTAATGACTTGTATATTTTTATCCTCTTTCTTGTCATAAGTCTCATATTGAATTATTGCACTGGTTCTAGGTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAG</genome_strand>
        <mrna_strand>GGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAG......................................................................GTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCANGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGNTTGTTGCCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E293974" ref_strand="+" ref_description="SGN-E293974 [cLET-13-J5]">
      <seq>tcaacatgatccaggagtcgctgaagttagcctatggagagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaacaggcgcatgcagaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcacgtccctgagaaaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatgcttgtgctcataatcctactggggtggatccgacagaggaacaatggagggagatctcgcaccagttcaaggtgaagggacattttgctttgtttgacatggcatatcanggatttgcaagtgggtatccagagaaggatgctaaagcaatcaggatatttcttgaggatggtcatccnatagcatgtgcccaatcatatgcaaaaaatatggggctatatggtcagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="72284" stop="70828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71984" g_stop="71804" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="287" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71460" g_stop="71356" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="392" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71285" g_stop="71128" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="550" r_length="158" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E293974" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71984" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71356"/>
          <exon e_start="71285" e_stop="71128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAGGTAATGACTTGTATATTTTTATCCTCTTTCTTGTCATAAGTCTCATATTGAATTATTGCACTGGTTCTAGGTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAG</genome_strand>
        <mrna_strand>TCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAG......................................................................GTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCANGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCNATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E319832" ref_strand="+" ref_description="SGN-E319832 [cTOB-12-F14]">
      <seq>gtggtttcaatatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggagagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaacaggcgcatgcagaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcacgtccctgagaaaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatgcttgtgctcataatcctactggggtggatccgacagaggaacaatggagggagatctcgcaccagttcaaggtgaagggacattttgctttgtttgacatggcatatcaaggatttgcaagtgggtatccagagaaggatgctaaagcaatcaggatatttcttgaggatggtcatccgatagcatgtgcccaatcatatgcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="72318" stop="70850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="220" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="326" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71460" g_stop="71356" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="431" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71285" g_stop="71150" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="567" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E319832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71356"/>
          <exon e_start="71285" e_stop="71150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAGGTAATGACTTGTATATTTTTATCCTCTTTCTTGTCATAAGTCTCATATTGAATTATTGCACTGGTTCTAGGTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAA</genome_strand>
        <mrna_strand>GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAG......................................................................GTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E326838" ref_strand="+" ref_description="SGN-E326838 [cTOC-25-K9]">
      <seq>tttggccatttctctatatcctctctccgttccggccatggcgatgcgtgccgctatttccggtcgtcaactaaaacttagctcgtcgtcgttcggagcgcgatccctgtcgtcgtggtggcgaaatgttgaaccggctcctaaagatcctatcctcggcgtaactgaagcttttctcgccgatcctagccctgacaaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatagctggtggtttcaatatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggagagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaacaggcgcatgcagaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcacgtccctgagaaaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatgcttgtgctcataatcctactggggtggatccgacagaggaacaatggagggagatctcgcaccagttcaaggtgaagggacattttgctttgtttgacatggcatatcanggatttgcaagtgggtatccagagaaggatgctaaagcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74076" stop="70905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73776" g_stop="73563" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="300" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="507" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="613" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71356" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="718" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71285" g_stop="71205" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="799" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E326838" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73776" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71356"/>
          <exon e_start="71285" e_stop="71205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAGGTAATGACTTGTATATTTTTATCCTCTTTCTTGTCATAAGTCTCATATTGAATTATTGCACTGGTTCTAGGTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATC</genome_strand>
        <mrna_strand>TTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAG......................................................................GTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCANGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E451177" ref_strand="+" ref_description="SGN-E451177 [cSTS-12-A5]">
      <seq>gatccgtgccgcgatttccggtagtcatctcaagcttagctcgtcgtcgctcggagcgcgatccttgtcgtcgtggtggcggaacgttgagccggcacctaaagatcctatcctcggcgttactgaagctttcctcgccgatcctagccctgataaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgtcagagaagcagagcgaaggatcgctggcggtttcaacatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggggagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaactggcgcatgccgaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcatgtcccagagagaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatgcttgtgctcataatcctactgggggtggatccgacagaggaacaatggangggagatctcgcaccagttcaaggtgaagggacattttgctttgtttgatatggcctatcaaggatttgcaagtgggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74034" stop="70929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73734" g_stop="73563" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="258" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="465" r_length="207" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="571" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71356" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="678" r_length="107" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71285" g_stop="71229" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="735" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E451177" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73734" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71356"/>
          <exon e_start="71285" e_stop="71229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACT-GGGGTGGATCCGACAGAGGAACAATGGA-GGGAGATCTCGCACCAGTTCAAGGTAATGACTTGTATATTTTTATCCTCTTTCTTGTCATAAGTCTCATATTGAATTATTGCACTGGTTCTAGGTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTAT</genome_strand>
        <mrna_strand>GATCCGTGCCGCGATTTCCGGTAGTCATCTCAAGCTTAGCTCGTCGTCGCTCGGAGCGCGATCCTTGTCGTCGTGGTGGCGGAACGTTGAGCCGGCACCTAAAGATCCTATCCTCGGCGTTACTGAAGCTTTCCTCGCCGATCCTAGCCCTGATAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTCAGAGAAGCAGAGCGAAGGATCGCTGGCGGTTTCAACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGGGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACTGGCGCATGCCGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCATGTCCCAGAGAGAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGGTGGATCCGACAGAGGAACAATGGANGGGAGATCTCGCACCAGTTCAAG......................................................................GTGAAGGGACATTTTGCTTTGTTTGATATGGCCTATCAAGGATTTGCAAGTGGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E328808" ref_strand="+" ref_description="SGN-E328808 [cTOC-23-P24]">
      <seq>ttttcctctcctatttggccatttctctatatcctctctccgttccggccatggcgatgcgtgccgctatttccggtcgtcaactaaaacttagctcgtcgtcgttcggagcgcgatccctgtcgtcgtggtggcgaaatgttgaaccggctcctaaagatcctatcctcggcgtaactgaagcttttctcgccgatcctagccctgacaaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatagctggtggtttcaatatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggagagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaacaggcgcatgcagaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcacgtccctgagaaaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatgcttgtgctcataatcctactggggtggatccgacagaggaacaatggagggagatctcgcaccagttcaaggtgaaaggacattttgctttgtttgacatggcatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74089" stop="70949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73789" g_stop="73563" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="313" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="520" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="626" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71356" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="731" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71285" g_stop="71249" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="768" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E328808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73789" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71356"/>
          <exon e_start="71285" e_stop="71249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAGGTAATGACTTGTATATTTTTATCCTCTTTCTTGTCATAAGTCTCATATTGAATTATTGCACTGGTTCTAGGTGAAGGGACATTTTGCTTTGTTTGACATGGCATATC</genome_strand>
        <mrna_strand>TTTTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAG......................................................................GTGAAAGGACATTTTGCTTTGTTTGACATGGCATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E554382" ref_strand="+" ref_description="SGN-E554382 [cTSC-4-C11]">
      <seq>actactcttacgtctcctatttataaagtcccatctctatcaaccgcctctacaaacacgccattttcctctcctatttggccatttctctatatcctctctccgttccggccatggcgatgcgtgccgctatttccggtcgtcaactaaaacttagctcgtcgtcgttcggagcgcgatccctgtcgtcgtggtggcgaaatgttgaaccggctcctaaagatcctatcctcggcgtaactgaagcttttctcgccgatcctagccctgacaaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatagctggtggtttcaatatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggagagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaacaggcgcatgcagaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcacgtccctgagaaaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatgcttgtgctcataatcctactggggtggatccgacagaggaacaatggagggagatctcgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74152" stop="71065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73852" g_stop="73563" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="376" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="583" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="689" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71365" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="785" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E554382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73852" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTCTTACGTCTCCTATTTATAAAGTCCCATCTCTATCAACCGCCTCTACAAACACGCCATTTTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCAC</genome_strand>
        <mrna_strand>ACTACTCTTACGTCTCCTATTTATAAAGTCCCATCTCTATCAACCGCCTCTACAAACACGCCATTTTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E448477" ref_strand="+" ref_description="SGN-E448477 [cSTS-3-G6]">
      <seq>gttttctctaaatactctctccgctcctgccatggcgatccgtgccgcgatttccggtagtcatctcaagcttagctcctcgtcgctcggagcgcgatccttgtcgtcgtggtggcggaacgttgagccggcacctaaagatcctatcctcggcgttactgaagctttcctcgccgatcctagccctgataaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatcgctggcggtttcaacatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggggagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaactggtgcatgccgaatttttgcggactttcaaaagcgcttttgtcctgattcacagatttatattccagttcctacatggtctaatcatcataacatttggagagatgctcatgtccctgagagaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatgcttgtgctcataatcctactggggtggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74068" stop="71097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73770" g_stop="73563" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="294" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="501" r_length="207" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="0.98"/>
            <acceptor a_prob="0.865" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="607" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71397" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="671" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E448477" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73770" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATC</genome_strand>
        <mrna_strand>GTTTTCTCTAAATACTCTCTCCGCTCCTGCCATGGCGATCCGTGCCGCGATTTCCGGTAGTCATCTCAAGCTTAGCTCCTCGTCGCTCGGAGCGCGATCCTTGTCGTCGTGGTGGCGGAACGTTGAGCCGGCACCTAAAGATCCTATCCTCGGCGTTACTGAAGCTTTCCTCGCCGATCCTAGCCCTGATAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATCGCTGGCGGTTTCAACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGGGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACTGGTGCATGCCGAATTTTTGCGGACTTTCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCAGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCATGTCCCTGAGAGAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E419678" ref_strand="+" ref_description="SGN-E419678 [STM-30-C17]">
      <seq>acacgccatcttcctctccgatttctctaaatactctctccgctccggccatggcgatccgtgcggcgatttccggtagtcatctcaagcttagctcgtcgtcgctcggagcgcgatccttgtcgtcgtggtggcggaacgttgagccggcacctaaagatcctatcctcggcgttactgaagcttttctcgccgatcctagccctgataaagtcaatgttggcgttggagcttacagggatgacaatggaaaacctgtggtactggagtgtgttagagaagcagagcgaaggatcgctggcggtttcaacatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggggagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaactggcgcatgccgaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattccagttcctacatggtctaatcatcataacatttggagagatgctcatgtccctgagagaacatatcactattatcatgctgaatcaaagggcttggactttgctgncatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74071" stop="71127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73797" g_stop="73563" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="313" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="520" r_length="207" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="0.98"/>
            <acceptor a_prob="0.865" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="626" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.790" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71427" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="660" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E419678" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73797" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGCCATTTTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATG</genome_strand>
        <mrna_strand>ACACGCCATCTTCCTCTCC------G--ATTTCTCTAAATACTCTCTCCGCTCCGGCCATGGCGATCCGTGCGGCGATTTCCGGTAGTCATCTCAAGCTTAGCTCGTCGTCGCTCGGAGCGCGATCCTTGTCGTCGTGGTGGCGGAACGTTGAGCCGGCACCTAAAGATCCTATCCTCGGCGTTACTGAAGCTTTTCTCGCCGATCCTAGCCCTGATAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCTGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATCGCTGGCGGTTTCAACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGGGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACTGGCGCATGCCGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCAGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCATGTCCCTGAGAGAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGNCATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E450817" ref_strand="+" ref_description="SGN-E450817 [cSTS-10-F13]">
      <seq>attttcctctcccatttctctaaatactctctccgctccggccatggcgatccgtgccgcgatttccggtagtcatctcaagcttagctcgtcgtcgctcggagcgcgatccttgtcgtcgtggtggcggaacgttgagccggcacctaaagatcctatcctcggcgttactgaagctttcctcgccgatcctagccctgataaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgtcagagaagcagagcgaaggatcgctggcggtttcaacatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggggagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaactggcgcatgccgaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcatgtcccagagagaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74071" stop="71138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73782" g_stop="73563" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="306" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="513" r_length="207" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="619" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71438" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="642" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E450817" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73782" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTT</genome_strand>
        <mrna_strand>ATTTTCCTCTCCCATTTCTCTAAATACTCTCTCCGCTCCGGCCATGGCGATCCGTGCCGCGATTTCCGGTAGTCATCTCAAGCTTAGCTCGTCGTCGCTCGGAGCGCGATCCTTGTCGTCGTGGTGGCGGAACGTTGAGCCGGCACCTAAAGATCCTATCCTCGGCGTTACTGAAGCTTTCCTCGCCGATCCTAGCCCTGATAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTCAGAGAAGCAGAGCGAAGGATCGCTGGCGGTTTCAACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGGGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACTGGCGCATGCCGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCATGTCCCAGAGAGAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E451043" ref_strand="+" ref_description="SGN-E451043 [cSTS-11-G4]">
      <seq>ttttcctctcccatttctctaaatactctctccgctccggccatggcgatccgtgccgcgatttccggtagtcatctcaagcttagctcgtcgtcgctcggagcgcgatccttgtcgtcgtggtggcggaacgttgagccggcacctaaagatcctatcctcggcgttactgaagctttcctcgccgatcctagccctgataaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgtcagagaagcagagcgaaggatcgctggcggtttcaacatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggggagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaactggcgcatgccgaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcatgtcccanagagaacatatcactattatcatgctgaattaaagggcttggactttgctgcaatgatggatgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74071" stop="71279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73781" g_stop="73563" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="305" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="512" r_length="207" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71579" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="614" r_length="102" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E451043" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73781" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATAT</genome_strand>
        <mrna_strand>TTTTCCTCTCCCATTTCTCTAAATACTCTCTCCGCTCCGGCCATGGCGATCCGTGCCGCGATTTCCGGTAGTCATCTCAAGCTTAGCTCGTCGTCGCTCGGAGCGCGATCCTTGTCGTCGTGGTGGCGGAACGTTGAGCCGGCACCTAAAGATCCTATCCTCGGCGTTACTGAAGCTTTCCTCGCCGATCCTAGCCCTGATAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTCAGAGAAGCAGAGCGAAGGATCGCTGGCGGTTTCAACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGGGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACTGGCGCATGCCGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCATGTCCCANAGAGAACATATCACTATTATCATGCTGAATTAAAGGGCTTGGACTTTGCTGCAATGATGGATGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E444601" ref_strand="+" ref_description="SGN-E444601 [cSTA-43-F19]">
      <seq>acacgccatcttcctctccgatttctctaaatactctctccgctccggccatggcgatccgtgcggcgatttccggtagtcatctcaagcttagctcgtcgtcgctcggagcgcgatccttgtcgtcgtggtggcggaacgttgagccggcacctaaagatcctatcctcggcgttactgaagcttttctcgccgatcctagccctgataaagtcaatgttggcgttggagcttacagggatgacaatggaaaacctgtggtactggagtgtgttagagaagcagagcgaaggatcgctggcggtttcaacatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggggagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaactggcgcatgccgaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattccagttcctacatggtctaatcatcataacatttggagagatgctcatgtccctgagagaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74071" stop="71282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73797" g_stop="73563" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="313" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="520" r_length="207" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="0.98"/>
            <acceptor a_prob="0.865" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71582" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="619" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E444601" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73797" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGCCATTTTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGA</genome_strand>
        <mrna_strand>ACACGCCATCTTCCTCTCC------G--ATTTCTCTAAATACTCTCTCCGCTCCGGCCATGGCGATCCGTGCGGCGATTTCCGGTAGTCATCTCAAGCTTAGCTCGTCGTCGCTCGGAGCGCGATCCTTGTCGTCGTGGTGGCGGAACGTTGAGCCGGCACCTAAAGATCCTATCCTCGGCGTTACTGAAGCTTTTCTCGCCGATCCTAGCCCTGATAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCTGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATCGCTGGCGGTTTCAACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGGGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACTGGCGCATGCCGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCAGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCATGTCCCTGAGAGAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E338396" ref_strand="+" ref_description="SGN-E338396 [cTOE-15-G21]">
      <seq>ttttcctctcctatttggccatttctctatatcctctctccgttccggccatggcgatgcgtgccgctatttccggtcgtcaactaaaacttagctcgtcgtcgttcggagcgcgatccctgtcgtcgtggtggcgaaatgttgaaccggctcctaaagatcctatcctcggcgtaactgaagcttttctcgccgatcctagccctgacaaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatagctggtggtttcaatatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggagagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaacaggcgcatgcagaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcacgtccctgagaaaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74089" stop="71282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73789" g_stop="73563" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="313" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="520" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71582" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="619" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E338396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73789" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGA</genome_strand>
        <mrna_strand>TTTTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E245343" ref_strand="+" ref_description="SGN-E245343 [cLEF-44-J8]">
      <seq>ctatttggccatttctctatatcctctctccgttccggccatggcgatgcgtgccgctatttccggtcgtcaactaaaacttatctcgtcgtcgttcggagcgcgatccctgtcgtcgtggtggcgaaatgttgaaccggctcctaaagatcctatcctcggcgtaactgaagcttttctcgccgatcctagccctgacaaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatagctggtggtttcaatatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggagagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaacaggcgcatgcagaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcacgtncctgagaaaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74079" stop="71282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73779" g_stop="73563" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="303" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="510" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71582" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="609" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E245343" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73779" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGA</genome_strand>
        <mrna_strand>CTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTATCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCACGTNCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E569341" ref_strand="+" ref_description="SGN-E569341 [13765]">
      <seq>attttcctctccgttttctctaaatactctctccgctcctgccatggcgatccgtgccgcgatttcacggtagtcatctcaagcttagctcctcgtcgctcggagcgcgatccttgtcgtcgtggtggcggaacgttgagccggcacctaaagatcctatcctcggcgttactgaagctttcctcgccgatcctagccctgataaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatcgctggcggtttcaacatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggggagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaactggtgcatgccgaatttttgcggactttcaaaagcgcttttgtcctgattcacagatttatattccagttcctacatggtctaatcatcataacatttggagagatgctcatgtccctgagagaacatatcactattatcatgctgaatccaagggcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74068" stop="71303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73768" g_stop="73563" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="221" r_length="207" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="307" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="514" r_length="207" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="0.98"/>
            <acceptor a_prob="0.865" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71603" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="592" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E569341" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73768" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTC-CGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGA</genome_strand>
        <mrna_strand>TTTCTCTAAATACTCTCTCCGCTCCTGCCATGGCGATCCGTGCCGCGATTTCACGGTAGTCATCTCAAGCTTAGCTCCTCGTCGCTCGGAGCGCGATCCTTGTCGTCGTGGTGGCGGAACGTTGAGCCGGCACCTAAAGATCCTATCCTCGGCGTTACTGAAGCTTTCCTCGCCGATCCTAGCCCTGATAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATCGCTGGCGGTTTCAACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGGGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACTGGTGCATGCCGAATTTTTGCGGACTTTCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCAGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCATGTCCCTGAGAGAACATATCACTATTATCATGCTGAATCCAAGGGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E256490" ref_strand="+" ref_description="SGN-E256490 [cLEG-38-P3]">
      <seq>ttcctctcctatttggccatttctctatatcctctctccgttccggccatggcgatgcgtgccgctatttccggtcgtcaactaaaacttagctcgtcgtcgttcggagcgcgatccctgtcgtcgtggtggcgaaatgttgaaccggctcctaaagatcctatcctcggcgtaactgaagcttttctcgccgatcctagccctgacaaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatagctggtggtttcaatatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggagagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaacaggcgcatgcagaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcacgtccctgagaaaacatatcactattatcatgctgaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74087" stop="71314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73787" g_stop="73563" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="311" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="518" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71614" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="585" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E256490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73787" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCA</genome_strand>
        <mrna_strand>TTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E571638" ref_strand="+" ref_description="SGN-E571638 [15280]">
      <seq>cgccattttcctctccgttttctctaaatactctctccgctcctgccatggcgatccgtgccgcgatttccggtagtcatctcaagcttagctcctcgtcgctcggagcgcgatccttgtcgtcgtggtggcggaacgttgagccggcacctaaagatcctatcctcggcgttactgaagctttcctcgccgatcctagccctgataaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatcgctggcggtttcaacatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggggagaactcacgacttgataaaagataaacgcattgctgcaattcaagcattatctgggaactggtgcatgccgcaatttttgcggactttcaaaagcgcttttgtcctgattcacagatttatattccagttcctacatggtctaatcatcataacatttggagagatgctcatgttcctgagagaacatatcactattatcatgctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74068" stop="71316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73768" g_stop="73563" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="224" r_length="206" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="310" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="520" r_length="210" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="0.98"/>
            <acceptor a_prob="0.865" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71616" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="585" r_length="65" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E571638" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73768" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCA-GACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCT-GGAACAGGCGCATGCAG-AATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAAT</genome_strand>
        <mrna_strand>TTTCTCTAAATACTCTCTCCGCTCCTGCCATGGCGATCCGTGCCGCGATTTCCGGTAGTCATCTCAAGCTTAGCTCCTCGTCGCTCGGAGCGCGATCCTTGTCGTCGTGGTGGCGGAACGTTGAGCCGGCACCTAAAGATCCTATCCTCGGCGTTACTGAAGCTTTCCTCGCCGATCCTAGCCCTGATAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATCGCTGGCGGTTTCAACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGGGAGAACTCACGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGGAACTGGTGCATGCCGCAATTTTTGCGGACTTTCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCAGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCATGTTCCTGAGAGAACATATCACTATTATCATGCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E412999" ref_strand="+" ref_description="SGN-E412999 [STM-17-M5]">
      <seq>ccattttcctctccgttttctctaaatactctctccgctcctgccatggcgatccgtgccgcgatttccggtagtcatctcaagcttagctcctcgtcgctcggagcgcgatccttgtcgtcgtggtggcggaacgttgagccggcacctaaagatcctatcctcggcgttactgaagctttcctcgccgatcctagccctgataaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatcgctggcggtttcaacatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggggagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaactggtgcatgccgaatttttgcggactttcaaaagcgcttttgtcctgattcacagatttatattccagttcctacatggtctaatcatcataacatttggagagatgctcatgtccctgagagaacatatcactattatcatgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74068" stop="71317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73768" g_stop="73563" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="222" r_length="206" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="308" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="515" r_length="207" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="0.98"/>
            <acceptor a_prob="0.865" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71617" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="579" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E412999" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73768" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAA</genome_strand>
        <mrna_strand>TTTCTCTAAATACTCTCTCCGCTCCTGCCATGGCGATCCGTGCCGCGATTTCCGGTAGTCATCTCAAGCTTAGCTCCTCGTCGCTCGGAGCGCGATCCTTGTCGTCGTGGTGGCGGAACGTTGAGCCGGCACCTAAAGATCCTATCCTCGGCGTTACTGAAGCTTTCCTCGCCGATCCTAGCCCTGATAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATCGCTGGCGGTTTCAACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGGGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACTGGTGCATGCCGAATTTTTGCGGACTTTCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCAGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCATGTCCCTGAGAGAACATATCACTATTATCATGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E462762" ref_strand="+" ref_description="SGN-E462762 [cPRO-12-L5]">
      <seq>ctcccatttctctaaatactctctccgctccggccatggcgatccgtgccgcgatttccggtagtcatctcaagcttagctcgtcgtcgctcggagcgcgatccttgtcgtcgtggtggcggaacgttgagccggcacctaaagatcctatcctcggcgttactgaagctttcctcgccgatcctagccctgataaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgtcagagaagcagagcgaaggatcgctggcggtttcaacatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggggagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaactggcgcatgccgaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74071" stop="71354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73774" g_stop="73563" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="298" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="505" r_length="207" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71653" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="533" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E462762" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73774" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCAC</genome_strand>
        <mrna_strand>CTCCCATTTCTCTAAATACTCTCTCCGCTCCGGCCATGGCGATCCGTGCCGCGATTTCCGGTAGTCATCTCAAGCTTAGCTCGTCGTCGCTCGGAGCGCGATCCTTGTCGTCGTGGTGGCGGAACGTTGAGCCGGCACCTAAAGATCCTATCCTCGGCGTTACTGAAGCTTTCCTCGCCGATCCTAGCCCTGATAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTCAGAGAAGCAGAGCGAAGGATCGCTGGCGGTTTCAACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGGGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACTGGCGCATGCCGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E284998" ref_strand="+" ref_description="SGN-E284998 [cLER-19-C18]">
      <seq>cggagcgcgatccctgtcgttttggtggcgaaatgttgaaccggctcctaaagatcctatcctcggcgtaactgaagcttttctcgccgatcctagccctgacaaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatagctggtggcttcaatatggaatatcttcctatgggaggtagtgtgaacatgatccaggagtagctgaagttcgcctatggagagaactcagacttgataaaagataaacgcattgctgccattcaagcatcttctggaacaggcgcatgcacaatttttgcggacttccaaaagcgcttgtgtcctgattcacagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="73983" stop="71529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73683" g_stop="73563" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="207" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71829" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="389" r_length="182" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E284998" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73683" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTT</genome_strand>
        <mrna_strand>CGGAGCGCGATCCCTGTCGTTTTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGCTTCAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTGAACATGATCCAGGAGTAGCTGAAGTTCGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCCATTCAAGCATCTTCTGGAACAGGCGCATGCACAATTTTTGCGGACTTCCAAAAGCGCTTGTGTCCTGATTCACAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E471527" ref_strand="+" ref_description="SGN-E471527 [cSTB-24-G2]">
      <seq>ccattttgctctccgttttctctaaatactctctccgctcctgccatggcgatccgtgccgcgatttccggtagtcatctcaagcttagctcctcgtcgctcggagcgcgatccttgtcgtcgtggtggcggaacgttgagccggcacctaaagatcctatcctcggcgttactgaagctttcctcgccgatcctagccctgataaagtcaatgtgggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgtcaaagaagcagaccgaaagatccctggcggtttcaacatggaatatcttcctatgggaggtggtgtcaacatgatccatgagtcgctgaagttagcctatggggagaactcagacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74068" stop="71631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73768" g_stop="73563" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="222" r_length="206" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="308" r_length="86" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="0.84"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71931" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="388" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E471527" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73768" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGA</genome_strand>
        <mrna_strand>TTTCTCTAAATACTCTCTCCGCTCCTGCCATGGCGATCCGTGCCGCGATTTCCGGTAGTCATCTCAAGCTTAGCTCCTCGTCGCTCGGAGCGCGATCCTTGTCGTCGTGGTGGCGGAACGTTGAGCCGGCACCTAAAGATCCTATCCTCGGCGTTACTGAAGCTTTCCTCGCCGATCCTAGCCCTGATAAAGTCAATGTGGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTCAAAGAAGCAGACCGAAAGATCCCTGGCGGTTTCAACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTGGTGTCAACATGATCCATGAGTCGCTGAAGTTAGCCTATGGGGAGAACTCAGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E338009" ref_strand="+" ref_description="SGN-E338009 [cTOE-14-G14]">
      <seq>ccatctctatcaaccgcctctacaaacacgccattttcctctcctatttggccatttctctatatcctctctccgttccggccatggcgatgcgtgccgctatttccggtcgtcaactaaaacttatctcgtcgtcattcggagcgcgatccctgtcgtcctggtggcgaaatgttgaaccggctcctaaagatcctatcctcggcgtaactgaagcttttctcgccgatcctagccctgacaaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcacagcgaaggatagctggtggtttcaatatggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74122" stop="72810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73822" g_stop="73563" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="346" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E338009" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73822" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCTCTATCAACCGCCTCTACAAACACGCCATTTTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATAT</genome_strand>
        <mrna_strand>CCATCTCTATCAACCGCCTCTACAAACACGCCATTTTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTATCTCGTCGTCATTCGGAGCGCGATCCCTGTCGTCCTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCACAGCGAAGGATAGCTGGTGGTTTCAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E550656" ref_strand="+" ref_description="SGN-E550656 [TUS-11-N18]">
      <seq>aacaccaggaaagcccaaggctttaagaaaaagtagtgggttggatccacttcagtcacattccgtagcagcttgctggcgtcctttcagaatgatcgttagaatgagtcattctaaggccatttttatatctaaatggaagggattattggtattaatcatagagaaattcatccgaggatgacttaactgagatgactcatcctatcaggcacaaatcaaacatgcactttgagttctaatagactcctctgaatccaagtgaaacctaagagctgtcaatgaagcagattaaacaaatgaagagagatgctagactccagccagaccaagaggaaaaattatgcaattcatatatatgaattgttgcggaaggtgcatcaagttggctgtgttgaaaatgactggaagatttctgcccataatatatcgatgtgaatgaccacatcatgagatttgacttttgtcataccaaaaacagctgtgaaacatttcatttggtatggcaaaatgagtataattgactaacagtattgttctatgtattacaacatgaacagagaaatttgagagtgtatttttgttatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="81131" stop="78516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80831" g_stop="80742" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80741" i_stop="79826" i_length="916">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.039" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79825" g_stop="79680" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="236" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79679" i_stop="79566" i_length="114">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.459" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79565" g_stop="79467" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="335" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79466" i_stop="79071" i_length="396">
            <donor d_prob="0.227" d_score="1.00"/>
            <acceptor a_prob="0.408" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79070" g_stop="78816" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="590" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E550656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80831" e_stop="80742"/>
          <exon e_start="79825" e_stop="79680"/>
          <exon e_start="79565" e_stop="79467"/>
          <exon e_start="79070" e_stop="78816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCAGGAAAGCCCAAGGCTTTAAGAAAAAGTAGTGGGTTGGATCCACTTCAGTCACATTCCGTAGCAGCTTGCTGGCGTCCTTTCAGGTCAGTAACTCCTGCAATAGGCAGCTAGGTTACGTGAAACTTATTTTTTGGTTTTCCTGTCCTAATTGAAGGTGAGTGGAAAGTTTACGCTAATATGTCTTTTAAAAGCGTAGTATTACTTGTTGGAATATTAAGGGATAAAAGCAATAAAAAAAACACATTTCTATCTTCTTTGGCTAATTGCATCACTCTAGACTTGATATACCCGGAAAAGGTGTCTCTTGCGCAACTAAGTGCAGTATCCCTTCTCTCTTTCATCTACCTTTTACCTTTTGATATTCTGTGTATGGTTTCACACTTTTGGTCATTCTCTGCTAAGCTTAAGTATAGAAAAGGTTTGGAAAAACACCTATCATTGGTTCTTTATATGCCCCACATTTAGGGTTTTCGGTAATTTTGAAGGTTCGGAAGTAATTTTGGTTCTTTATATCATTGGTTCTTTATATGCCAGCTGTTAAATCAAAGGCCTAAAGCCCAAAACATTAGTTAATTGGCTAATATTTCCATGTATATTTTCTTTGTTCTGTTTCACTTCCATGATCCTTTGCCTCTTAAGGTCCATGATCCTTTACCTCTTACGCTGCCTTTTTCAATATATGGTTCACATTGTATCAAGCTGAATAGGCTTCTGAAGTCCTTAAACTCTTCCTGTCATTGTCTATATGAAATCGTGGATCTTAGGTTCAACTATTTACTGTTTGTGATTCTATTCCTGATATTGCCTTCTGCTCGTCTTTCCTTGAGTTTTCTTTTAATATGCTTGGATTAGATTCTTAGTATAAACTGTCCCTGTTTAGTACACAAGAAAAGATGGCAGGAGGAGACATACGGCCGACTCATCTTTTTATCCTTTCTTTAGTGGTGAGGTGAGGAGTTATCAAGCTGATGCATCATCTCATCTTGTCTTTGGATGCAGAATGATCGTTAGAATGAGTCATTCTAAGGCCATTTTTATATCTAAATGGAAGGGATTATTGGTATTAATCATAGAGAAATTCATCCGAGGATGACTTAACTGAGATGACTCATCCTATCAGGCACAAATCAAACATGCACTTTGAGGTGGCAATTTGTGACCTGGGAACTTTGTGCTCTCTTTTAGGTACTCTCTGTTAAAATGTGTTCCACCATTCCTCGTGAGTTTAATTAATTTGCCTCTTATCATGCTTTTGCCAGTTCTAATAGACTCCTCTGAATCCAAGTGAAACCTAAGAGCTGTCAATGAAGCAGATTAAACAAATGAAGAGAGATGCTAGACTCCAGCCAGACCAAGAGGTGAGCTTCATTGTCGAAAATCTCAAGTTGCTTACAGCACTGGCTCAACCAAACTTCAGACCACAAATAGATCTTTTAGTTACAAAATCATATGATAGTTACTATTTTTCTCTTTTTTTGGAAAAAAAGAAAGAAAGAGGACGAATCATAATCTCCCTTTTTATGTATTAAACTTCTATGATATGGTTTTTATCATTTTCCTGTTAGCCTCGGTGTCATCGCTTTTAGATGCAAAAGTTCGTCCTATTTTAGCACTAAAACTTCCATGATATACTGCTTAGTTGTTTCTCTGGTTTAGCCTTGTCATCATTTACTTTTAGATGAAAAAAAGTTCTCTCTCCCTTAACACCATGACAGTGCTCAATAACTTGTGCTGCATCAACTTATTCTTTATAGGAAAAATTATGCAATTCATATATATGAATTGTTGCGGAAGGTGCATCAAGTTGGCTGTGTTGAAAATGACTGGAAGATTTCTGCCCATAATATATCGATGTGAATGACCACATCATGAGATTTGACTTTTGTCATACCAAAAACAGCTGTGAAACATTTCATTTGGTATGGCAAAATGAGTATAATTGACTAACAGTATTGTTCTATGTATTACAACATGAACAGAGAAATTTGAGAGTGTATTTTTGTTATGGC</genome_strand>
        <mrna_strand>AACACCAGGAAAGCCCAAGGCTTTAAGAAAAAGTAGTGGGTTGGATCCACTTCAGTCACATTCCGTAGCAGCTTGCTGGCGTCCTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATCGTTAGAATGAGTCATTCTAAGGCCATTTTTATATCTAAATGGAAGGGATTATTGGTATTAATCATAGAGAAATTCATCCGAGGATGACTTAACTGAGATGACTCATCCTATCAGGCACAAATCAAACATGCACTTTGAG..................................................................................................................TTCTAATAGACTCCTCTGAATCCAAGTGAAACCTAAGAGCTGTCAATGAAGCAGATTAAACAAATGAAGAGAGATGCTAGACTCCAGCCAGACCAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATTATGCAATTCATATATATGAATTGTTGCGGAAGGTGCATCAAGTTGGCTGTGTTGAAAATGACTGGAAGATTTCTGCCCATAATATATCGATGTGAATGACCACATCATGAGATTTGACTTTTGTCATACCAAAAACAGCTGTGAAACATTTCATTTGGTATGGCAAAATGAGTATAATTGACTAACAGTATTGTTCTATGTATTACAACATGAACAGAGAAATTTGAGAGTGTATTTTTGTTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E688317" ref_strand="+" ref_description="SGN-E688317 [t3_tus_11_n18]">
      <seq>aacaccaggaaagcccaaggctttaagaaaaagtagtgggttggatccacttcagtcacattccgtagcagcttgctggcgtcctttcagaatgatcgttagaatgagtcattctaaggccatttttatatctaaatggaagggattattggtattaatcatagagaaattcatccgaggatgacttaactgagatgactcatcctatcaggcacaaatcaaacatgcactttgagttctaatagactcctctgaatccaagtgaaacctaagagctgtcaatgaagcagattaaacaaatgaagagagatgctagactccagccagaccaagaggaaaaattatgcaattcatatatatgaattgttgcggaaggtgcatcaagttggctgtgttgaaaatgactggaagatttctgcccataatatatcgatgtgaatgaccacatcatgagatttgacttttgtcataccaaaaacagctgtgaaacatttcatttggtatggcaaaatgagtataattgactaacagtattgttctatgtattacaacatgaacagagaaatttgagagtgtatttttgttatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="81131" stop="78516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80831" g_stop="80742" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80741" i_stop="79826" i_length="916">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.039" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79825" g_stop="79680" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="236" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79679" i_stop="79566" i_length="114">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.459" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79565" g_stop="79467" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="335" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79466" i_stop="79071" i_length="396">
            <donor d_prob="0.227" d_score="1.00"/>
            <acceptor a_prob="0.408" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79070" g_stop="78816" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="590" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E688317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80831" e_stop="80742"/>
          <exon e_start="79825" e_stop="79680"/>
          <exon e_start="79565" e_stop="79467"/>
          <exon e_start="79070" e_stop="78816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCAGGAAAGCCCAAGGCTTTAAGAAAAAGTAGTGGGTTGGATCCACTTCAGTCACATTCCGTAGCAGCTTGCTGGCGTCCTTTCAGGTCAGTAACTCCTGCAATAGGCAGCTAGGTTACGTGAAACTTATTTTTTGGTTTTCCTGTCCTAATTGAAGGTGAGTGGAAAGTTTACGCTAATATGTCTTTTAAAAGCGTAGTATTACTTGTTGGAATATTAAGGGATAAAAGCAATAAAAAAAACACATTTCTATCTTCTTTGGCTAATTGCATCACTCTAGACTTGATATACCCGGAAAAGGTGTCTCTTGCGCAACTAAGTGCAGTATCCCTTCTCTCTTTCATCTACCTTTTACCTTTTGATATTCTGTGTATGGTTTCACACTTTTGGTCATTCTCTGCTAAGCTTAAGTATAGAAAAGGTTTGGAAAAACACCTATCATTGGTTCTTTATATGCCCCACATTTAGGGTTTTCGGTAATTTTGAAGGTTCGGAAGTAATTTTGGTTCTTTATATCATTGGTTCTTTATATGCCAGCTGTTAAATCAAAGGCCTAAAGCCCAAAACATTAGTTAATTGGCTAATATTTCCATGTATATTTTCTTTGTTCTGTTTCACTTCCATGATCCTTTGCCTCTTAAGGTCCATGATCCTTTACCTCTTACGCTGCCTTTTTCAATATATGGTTCACATTGTATCAAGCTGAATAGGCTTCTGAAGTCCTTAAACTCTTCCTGTCATTGTCTATATGAAATCGTGGATCTTAGGTTCAACTATTTACTGTTTGTGATTCTATTCCTGATATTGCCTTCTGCTCGTCTTTCCTTGAGTTTTCTTTTAATATGCTTGGATTAGATTCTTAGTATAAACTGTCCCTGTTTAGTACACAAGAAAAGATGGCAGGAGGAGACATACGGCCGACTCATCTTTTTATCCTTTCTTTAGTGGTGAGGTGAGGAGTTATCAAGCTGATGCATCATCTCATCTTGTCTTTGGATGCAGAATGATCGTTAGAATGAGTCATTCTAAGGCCATTTTTATATCTAAATGGAAGGGATTATTGGTATTAATCATAGAGAAATTCATCCGAGGATGACTTAACTGAGATGACTCATCCTATCAGGCACAAATCAAACATGCACTTTGAGGTGGCAATTTGTGACCTGGGAACTTTGTGCTCTCTTTTAGGTACTCTCTGTTAAAATGTGTTCCACCATTCCTCGTGAGTTTAATTAATTTGCCTCTTATCATGCTTTTGCCAGTTCTAATAGACTCCTCTGAATCCAAGTGAAACCTAAGAGCTGTCAATGAAGCAGATTAAACAAATGAAGAGAGATGCTAGACTCCAGCCAGACCAAGAGGTGAGCTTCATTGTCGAAAATCTCAAGTTGCTTACAGCACTGGCTCAACCAAACTTCAGACCACAAATAGATCTTTTAGTTACAAAATCATATGATAGTTACTATTTTTCTCTTTTTTTGGAAAAAAAGAAAGAAAGAGGACGAATCATAATCTCCCTTTTTATGTATTAAACTTCTATGATATGGTTTTTATCATTTTCCTGTTAGCCTCGGTGTCATCGCTTTTAGATGCAAAAGTTCGTCCTATTTTAGCACTAAAACTTCCATGATATACTGCTTAGTTGTTTCTCTGGTTTAGCCTTGTCATCATTTACTTTTAGATGAAAAAAAGTTCTCTCTCCCTTAACACCATGACAGTGCTCAATAACTTGTGCTGCATCAACTTATTCTTTATAGGAAAAATTATGCAATTCATATATATGAATTGTTGCGGAAGGTGCATCAAGTTGGCTGTGTTGAAAATGACTGGAAGATTTCTGCCCATAATATATCGATGTGAATGACCACATCATGAGATTTGACTTTTGTCATACCAAAAACAGCTGTGAAACATTTCATTTGGTATGGCAAAATGAGTATAATTGACTAACAGTATTGTTCTATGTATTACAACATGAACAGAGAAATTTGAGAGTGTATTTTTGTTATGGC</genome_strand>
        <mrna_strand>AACACCAGGAAAGCCCAAGGCTTTAAGAAAAAGTAGTGGGTTGGATCCACTTCAGTCACATTCCGTAGCAGCTTGCTGGCGTCCTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATCGTTAGAATGAGTCATTCTAAGGCCATTTTTATATCTAAATGGAAGGGATTATTGGTATTAATCATAGAGAAATTCATCCGAGGATGACTTAACTGAGATGACTCATCCTATCAGGCACAAATCAAACATGCACTTTGAG..................................................................................................................TTCTAATAGACTCCTCTGAATCCAAGTGAAACCTAAGAGCTGTCAATGAAGCAGATTAAACAAATGAAGAGAGATGCTAGACTCCAGCCAGACCAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATTATGCAATTCATATATATGAATTGTTGCGGAAGGTGCATCAAGTTGGCTGTGTTGAAAATGACTGGAAGATTTCTGCCCATAATATATCGATGTGAATGACCACATCATGAGATTTGACTTTTGTCATACCAAAAACAGCTGTGAAACATTTCATTTGGTATGGCAAAATGAGTATAATTGACTAACAGTATTGTTCTATGTATTACAACATGAACAGAGAAATTTGAGAGTGTATTTTTGTTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E273950" ref_strand="+" ref_description="SGN-E273950 [cLEN-7-D12]">
      <seq>agcccaaggcttttaaaaaaaagtagtggggttggatccacttcagtcacattccgtagcagcttgctggcgtcctttcagaatgatcgttagaatgagtcattctaaggccatttttatatctaaatggaagggattattggtattaatcatagagaaattcatccgaggatgacttaactgagatgactcatcctatcaggcacaaatcaaacatgcactttgagttctaatagactcctctgaatccaagtgaaacctaagagctgtcaatgaagcagattaaacaaatgaagagagatgctagactccagccagaccaagaggaaaaattatgcaattcatatatatgaattgttgcggaaggtgcatcaagttggctgtgttgaaaatgactggaagatttctgcccataatatatcgatgtgaatgaccacatcatgagatttgacttttgtcataccaaaaacagctgtgaaacatttcatttggtatggcaaaatgagtataattgactaacagtattgttctatgtattacaacatgaacagagaaatttgagagtgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="81120" stop="78524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80820" g_stop="80742" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80741" i_stop="79826" i_length="916">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.039" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79825" g_stop="79680" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="227" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79679" i_stop="79566" i_length="114">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.459" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79565" g_stop="79467" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="326" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79466" i_stop="79071" i_length="396">
            <donor d_prob="0.227" d_score="1.00"/>
            <acceptor a_prob="0.408" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79070" g_stop="78824" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="573" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E273950" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80820" e_stop="80742"/>
          <exon e_start="79825" e_stop="79680"/>
          <exon e_start="79565" e_stop="79467"/>
          <exon e_start="79070" e_stop="78824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCAAGGC-TTTAAGAAAAAGTAGTGG-GTTGGATCCACTTCAGTCACATTCCGTAGCAGCTTGCTGGCGTCCTTTCAGGTCAGTAACTCCTGCAATAGGCAGCTAGGTTACGTGAAACTTATTTTTTGGTTTTCCTGTCCTAATTGAAGGTGAGTGGAAAGTTTACGCTAATATGTCTTTTAAAAGCGTAGTATTACTTGTTGGAATATTAAGGGATAAAAGCAATAAAAAAAACACATTTCTATCTTCTTTGGCTAATTGCATCACTCTAGACTTGATATACCCGGAAAAGGTGTCTCTTGCGCAACTAAGTGCAGTATCCCTTCTCTCTTTCATCTACCTTTTACCTTTTGATATTCTGTGTATGGTTTCACACTTTTGGTCATTCTCTGCTAAGCTTAAGTATAGAAAAGGTTTGGAAAAACACCTATCATTGGTTCTTTATATGCCCCACATTTAGGGTTTTCGGTAATTTTGAAGGTTCGGAAGTAATTTTGGTTCTTTATATCATTGGTTCTTTATATGCCAGCTGTTAAATCAAAGGCCTAAAGCCCAAAACATTAGTTAATTGGCTAATATTTCCATGTATATTTTCTTTGTTCTGTTTCACTTCCATGATCCTTTGCCTCTTAAGGTCCATGATCCTTTACCTCTTACGCTGCCTTTTTCAATATATGGTTCACATTGTATCAAGCTGAATAGGCTTCTGAAGTCCTTAAACTCTTCCTGTCATTGTCTATATGAAATCGTGGATCTTAGGTTCAACTATTTACTGTTTGTGATTCTATTCCTGATATTGCCTTCTGCTCGTCTTTCCTTGAGTTTTCTTTTAATATGCTTGGATTAGATTCTTAGTATAAACTGTCCCTGTTTAGTACACAAGAAAAGATGGCAGGAGGAGACATACGGCCGACTCATCTTTTTATCCTTTCTTTAGTGGTGAGGTGAGGAGTTATCAAGCTGATGCATCATCTCATCTTGTCTTTGGATGCAGAATGATCGTTAGAATGAGTCATTCTAAGGCCATTTTTATATCTAAATGGAAGGGATTATTGGTATTAATCATAGAGAAATTCATCCGAGGATGACTTAACTGAGATGACTCATCCTATCAGGCACAAATCAAACATGCACTTTGAGGTGGCAATTTGTGACCTGGGAACTTTGTGCTCTCTTTTAGGTACTCTCTGTTAAAATGTGTTCCACCATTCCTCGTGAGTTTAATTAATTTGCCTCTTATCATGCTTTTGCCAGTTCTAATAGACTCCTCTGAATCCAAGTGAAACCTAAGAGCTGTCAATGAAGCAGATTAAACAAATGAAGAGAGATGCTAGACTCCAGCCAGACCAAGAGGTGAGCTTCATTGTCGAAAATCTCAAGTTGCTTACAGCACTGGCTCAACCAAACTTCAGACCACAAATAGATCTTTTAGTTACAAAATCATATGATAGTTACTATTTTTCTCTTTTTTTGGAAAAAAAGAAAGAAAGAGGACGAATCATAATCTCCCTTTTTATGTATTAAACTTCTATGATATGGTTTTTATCATTTTCCTGTTAGCCTCGGTGTCATCGCTTTTAGATGCAAAAGTTCGTCCTATTTTAGCACTAAAACTTCCATGATATACTGCTTAGTTGTTTCTCTGGTTTAGCCTTGTCATCATTTACTTTTAGATGAAAAAAAGTTCTCTCTCCCTTAACACCATGACAGTGCTCAATAACTTGTGCTGCATCAACTTATTCTTTATAGGAAAAATTATGCAATTCATATATATGAATTGTTGCGGAAGGTGCATCAAGTTGGCTGTGTTGAAAATGACTGGAAGATTTCTGCCCATAATATATCGATGTGAATGACCACATCATGAGATTTGACTTTTGTCATACCAAAAACAGCTGTGAAACATTTCATTTGGTATGGCAAAATGAGTATAATTGACTAACAGTATTGTTCTATGTATTACAACATGAACAGAGAAATTTGAGAGTGTATTTTT</genome_strand>
        <mrna_strand>AGCCCAAGGCTTTTAAAAAAAAGTAGTGGGGTTGGATCCACTTCAGTCACATTCCGTAGCAGCTTGCTGGCGTCCTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATCGTTAGAATGAGTCATTCTAAGGCCATTTTTATATCTAAATGGAAGGGATTATTGGTATTAATCATAGAGAAATTCATCCGAGGATGACTTAACTGAGATGACTCATCCTATCAGGCACAAATCAAACATGCACTTTGAG..................................................................................................................TTCTAATAGACTCCTCTGAATCCAAGTGAAACCTAAGAGCTGTCAATGAAGCAGATTAAACAAATGAAGAGAGATGCTAGACTCCAGCCAGACCAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATTATGCAATTCATATATATGAATTGTTGCGGAAGGTGCATCAAGTTGGCTGTGTTGAAAATGACTGGAAGATTTCTGCCCATAATATATCGATGTGAATGACCACATCATGAGATTTGACTTTTGTCATACCAAAAACAGCTGTGAAACATTTCATTTGGTATGGCAAAATGAGTATAATTGACTAACAGTATTGTTCTATGTATTACAACATGAACAGAGAAATTTGAGAGTGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E739307" ref_strand="+" ref_description="SGN-E739307 [LC16DF08]">
      <seq>cattacatgctgttgaaactgtgaaaagttattacaacaataacaacaacatatacctaatggggtccgggcagggtagagtgtatgcaaaccttacccctacctcatggaggtagagaggaggtttccggaagaccctcggatcaagacttattatgcggaagtaaatgcattctttattacagatgcgaaacaattaggtgggccaaaactactttaatgcggttgcgctatgggttactacttgaacagaagtttgcctattgaagcttgaagttgggactgagcaattcaaagatttgggacaagtaagatagcttccaaagcttcttctatcaattgccatgaacttagtatggtgagtttaaatttatattttctttctcgttcacttagttgagctttccttggtaggaaaagaaaggacatttatttctctcagattttgttactatatagtaattctccttgacacctgacattttgtgaattttctcggtaagatagcactttgctatcttgatttgagaaacttatacaccttggagtaagcaagtgtacaagtagaagttacaatttttttccatatcaggaaaggaattagcagctaaatacagttaaaagggtcaggtgtaatttccgccttcttttgtattgcaatttgcatgtcctttccaagccaatgactgagtttagtagtattatatcaaagcttttacatccacttactctctaagttgattcttacatgcaactttgtccttaaatttgcaagaatgacagtatttgagattgaaaagattcaataacaccaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="82423" stop="80521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82124" g_stop="81912" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81911" i_stop="81511" i_length="401">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81510" g_stop="81446" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="278" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81445" i_stop="81361" i_length="85">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81360" g_stop="80821" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="818" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E739307" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82124" e_stop="81912"/>
          <exon e_start="81510" e_stop="81446"/>
          <exon e_start="81360" e_stop="80821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACATGCTGTTGAAACTGTGAAAAGTTATTACAACAATAACAACAACATATACCTAATGGGGTCCGGGCAGGGTAGAGTGTATGCAAACCTTACCCCTACCTCATGGAGGTAGAGAGGAGGTTTCCGGAAGACCCTCGGATCAAGACTTATTATGCGGAAGTAAATGCATTCTTTATTACAGATGCGAAACAATTAGGTGGGCCAAAACTGTAAGTCATTTATACTTCCAGATAATCTCTGACCACTTTTTCTTTTGTAATGTTTAGTATTGAATTTCAAAGGTAGATAGTAGAGTACAATCAGTTCAATTTAGGACTGCTCTTTTCTGCAGCATGTCATTCTGGGCTTTGAATCTGAAATCATTAAGCTGTCGTTTTTGGCTGAAGAAAAATCAAAGGAGAGGATTGTACTGCTCTTTTTCCCCGAGTAGTTAGAAATAAAGTGTTCTTACTTATTTGAGCCAGATTTATCTTTTCTGCTCTTTGAAGTTGTTTAAGATGTGTTGACTATAGCCAGTTCCTTTTTCAGGATCTTTTAAATGACCACAATTATTGGTTGCTATCAAATTTATTGATAATTGATGTTGTGGTATGCATATGATTACTTGCAGACTTTAATGCGGTTGCGCTATGGGTTACTACTTGAACAGAAGTTTGCCTATTGAAGCTTGAAGTTGTAAGTTCCCTACATCTTCATTTTCCGAATTGATCTTCATACCGGTTTCAGTTATGAATTTTTTCCTTGTCTGTCTCTATGACAGGGGACTGAGCAATTCAAAGATTTGGGACAAGTAAGATAGCTTCCAAAGCTTCTTCTATCAATTGCCATGAACTTAGTATGGTGAGTTTAAATTTATATTTTCTTTCTCGTTCACTTAGTTGAGCTTTCCTTGGTAGGAAAAGAAAGGACATTTATTTCTCTCAGATTTTGTTACTATATAGTAATTCTCCTTGACACCTGACATTTTGTGAATTTTCTCGGTAAGATAGCACTTTGCTATCTTGATTTGAGAAACTTATACACCTTGGAGTAAGCAAGTGTACAAGTAGAAGTTACAATTTTTTTCCATATCAGGAAAGGAATTAGCAGCTAAATACAGTTAAAAGGGTCAGGTGTAATTTCCGCCTTCTTTTGTATTGCAATTTGCATGTCCTTTCCAAGCCAATGACTGAGTTTAGTAGTATTATATCAAAGCTTTTACATCCACTTACTCTCTAAGTTGATTCTTACATGCAACTTTGTCCTTAAATTTGCAAGAATGACAGTATTTGAGATTGAAAAGATTCAATAACACCAGGAA</genome_strand>
        <mrna_strand>CATTACATGCTGTTGAAACTGTGAAAAGTTATTACAACAATAACAACAACATATACCTAATGGGGTCCGGGCAGGGTAGAGTGTATGCAAACCTTACCCCTACCTCATGGAGGTAGAGAGGAGGTTTCCGGAAGACCCTCGGATCAAGACTTATTATGCGGAAGTAAATGCATTCTTTATTACAGATGCGAAACAATTAGGTGGGCCAAAACT.................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTAATGCGGTTGCGCTATGGGTTACTACTTGAACAGAAGTTTGCCTATTGAAGCTTGAAGTT.....................................................................................GGGACTGAGCAATTCAAAGATTTGGGACAAGTAAGATAGCTTCCAAAGCTTCTTCTATCAATTGCCATGAACTTAGTATGGTGAGTTTAAATTTATATTTTCTTTCTCGTTCACTTAGTTGAGCTTTCCTTGGTAGGAAAAGAAAGGACATTTATTTCTCTCAGATTTTGTTACTATATAGTAATTCTCCTTGACACCTGACATTTTGTGAATTTTCTCGGTAAGATAGCACTTTGCTATCTTGATTTGAGAAACTTATACACCTTGGAGTAAGCAAGTGTACAAGTAGAAGTTACAATTTTTTTCCATATCAGGAAAGGAATTAGCAGCTAAATACAGTTAAAAGGGTCAGGTGTAATTTCCGCCTTCTTTTGTATTGCAATTTGCATGTCCTTTCCAAGCCAATGACTGAGTTTAGTAGTATTATATCAAAGCTTTTACATCCACTTACTCTCTAAGTTGATTCTTACATGCAACTTTGTCCTTAAATTTGCAAGAATGACAGTATTTGAGATTGAAAAGATTCAATAACACCAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E719392" ref_strand="+" ref_description="SGN-E719392 [FC07CH08]">
      <seq>gcatcttcttcattacgttaagtattcttcaactcacttgctgctgctgctgcaatctcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagttgagaaccagcttagcaagtttatgcattttgtagactgatgtctatatcactcctagagggaagttttggggaatttctattagttggtgtatgagggaggatgtgttagttcccattttgtctatcagatgaactcaaatctttttttttttttgggttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85887" stop="88683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86186" g_stop="86255" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="178" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="221" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="417" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88383" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="782" r_length="365" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E719392" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86186" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCTTCATTAGGCTCAGTATTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATC-TTTTTTTTTTTTGTGTTGCA</genome_strand>
        <mrna_strand>GCATCTTCTTCATTACGTTAAGTATTCTTCAACTCACTTGCTGCTGCTGCTGCAATCTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTTGGGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E438685" ref_strand="+" ref_description="SGN-E438685 [cSTA-9-M19]">
      <seq>gttcagtactcttcaacactccctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcatattgatcttggaattaagtatgacccttcaactggaatttatggtatggatttctatgttgtcttggagcgtcctggatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85929" stop="88383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86202" g_stop="86255" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.852"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.86"/>
            <acceptor a_prob="0.913" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="157" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="200" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="396" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88083" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="460" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E438685" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86202" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAGTATTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATAC</genome_strand>
        <mrna_strand>GTTCAGTACTCTTCAA--CACT--C-CCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCATATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGAATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E554124" ref_strand="+" ref_description="SGN-E554124 [cTSC-3-E7]">
      <seq>ctcagtattcttcaactcacttgctgctgctgagtgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagttgagaaccagcttagcaagtttatgcattttgtagactgatgtctatatcactcctagagggaagttttggggaatttctattagttggtgtatgagggaggatgtgttagttcccattttgtctatcagatgaactcaaatctttttttttttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85903" stop="88678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86203" g_stop="86255" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="162" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="205" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="401" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88379" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="761" r_length="360" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E554124" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86203" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTATTCTTCAACTCACTTGCTGCTGCTG-CTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGT</genome_strand>
        <mrna_strand>CTCAGTATTCTTCAACTCACTTGCTGCTGCTGAGTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E400055" ref_strand="+" ref_description="SGN-E400055 [cSTC-4-D5]">
      <seq>tcagtactcttcaacactccctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85929" stop="88394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86204" g_stop="86255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.865"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.86"/>
            <acceptor a_prob="0.913" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86453" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="147" r_length="100" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86454" i_stop="87473" i_length="1020">
            <donor d_prob="0.538" d_score="0.90"/>
            <acceptor a_prob="0.883" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="343" r_length="196" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88020" g_stop="88094" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="418" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E400055" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86204" e_stop="86255"/>
          <exon e_start="86352" e_stop="86453"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTATTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCG</genome_strand>
        <mrna_strand>TCAGTACTCTTCAA--CACT--C-CCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E717037" ref_strand="+" ref_description="SGN-E717037 [FB18DA06]">
      <seq>gtattcttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagttgagaaccagcttagcaagtttatgcattttgtagactgatgtctatatcactcctagagggaagttttggggaatttctattagttggtgtatgagggaggatgtgttagttcccattttgtctatcagatgaactcaaatctttttttttttgtgttgcaatcatagtagaaccattaatctagcatcacaagagatgttacgaatacctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85907" stop="88735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86207" g_stop="86255" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="157" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="200" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="396" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88434" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="810" r_length="414" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E717037" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86207" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTA</genome_strand>
        <mrna_strand>GTATTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATC-TTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E460011" ref_strand="+" ref_description="SGN-E460011 [cPRO-29-N11]">
      <seq>gtactcttcaacactccctgctgctgcaatttcgtccagcaattgcttccgagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcatattgatcttggaattaagtatgacccttcaactggaatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaagattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaataagtcctcaaacattcagtgataagctgagaaccagcttagcaagtttatgcattgtgtagactgatatctatgtcattcctagagggaagttttggtgcgttcatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85929" stop="88603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86207" g_stop="86255" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.837"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.84"/>
            <acceptor a_prob="0.913" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="152" r_length="108" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="195" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="391" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88303" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="675" r_length="284" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E460011" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86207" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATT</genome_strand>
        <mrna_strand>GTACTCTTCAA--CAC-TCC--CTGCTGCTGCAATTTCGTCCAGCAATT................................................................................................GCTTCCGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCATATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGAATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAAGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAATAAGTCCTCAAACATTCAGTGATAAGCTGAGAACCAGCTTAGCAAGTTTATGCATTGTGTAGACTGATATCTATGTCATTCCTAGAGGGAAGTTTTGGTGCGTTCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E451085" ref_strand="+" ref_description="SGN-E451085 [cSTS-11-O4]">
      <seq>gtactcttcaacactccctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgttctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgctgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaagattcaatgaagtggttccaggtcaaatatgaaggtgttatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85929" stop="88491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86207" g_stop="86255" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.86"/>
            <acceptor a_prob="0.913" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="152" r_length="108" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="195" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="391" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88191" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="563" r_length="172" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E451085" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86207" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTT</genome_strand>
        <mrna_strand>GTACTCTTCAA--CAC-TCC--CTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTTCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGCTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAAGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E311645" ref_strand="+" ref_description="SGN-E311645 [cLEZ-9-O10]">
      <seq>tattcttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcacctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgncttggagcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85908" stop="88375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86208" g_stop="86255" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="156" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="199" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="395" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88075" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="451" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E311645" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86208" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTC</genome_strand>
        <mrna_strand>TATTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCACCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGNCTTGGAGCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E442183" ref_strand="+" ref_description="SGN-E442183 [cSTA-32-A24]">
      <seq>ctcttcaacactccctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcatattgatcttggaattaagtatgacccttcaactggaatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaagattcaatgaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85929" stop="88460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86210" g_stop="86255" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.85"/>
            <acceptor a_prob="0.913" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="149" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="192" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="388" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88160" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="529" r_length="141" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E442183" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86210" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTG</genome_strand>
        <mrna_strand>CTCTTCAA--CAC-T-C-CCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCATATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGAATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAAGATTCAATGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E280013" ref_strand="+" ref_description="SGN-E280013 [cLEL-7-O23]">
      <seq>gcacgagctcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaggaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgaagttgttgacaaggacgtttcagtgaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85916" stop="87922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86211" g_stop="86255" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.89"/>
            <acceptor a_prob="0.913" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="153" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="196" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87622" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="347" r_length="151" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E280013" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86211" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATG-AGTTGTTGAGAAGGA-ACTTCAGTGAAACC</genome_strand>
        <mrna_strand>GCACGAGCTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAGGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAAGTTGTTGACAAGGACGTTTCAGTGAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E700396" ref_strand="+" ref_description="SGN-E700396 [FA13AA05]">
      <seq>ctctctctcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagttgagaaccagcttagcaagtttatgcattttgtagactgatgtctatatcactcctagagggaagttttggggaatttctattagttggtgtatgagggaggatgtgttagttccccattttgtctatcagatgaactcaaatctttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85918" stop="88675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86212" g_stop="86255" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.91"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="152" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="195" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="391" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88375" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="748" r_length="357" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E700396" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86212" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTT-CCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTT</genome_strand>
        <mrna_strand>CTCTCTCTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E736878" ref_strand="+" ref_description="SGN-E736878 [LC07CF06]">
      <seq>cttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagttgagaaccagcttagcaagtttatgcattttgtagactgatgtctatatcactcctagagggaagttttggggaatttctattagttggtgtatgagggaggatgtgttagttcccattttgtctatcagatgaactcaaatcttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85912" stop="88674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86212" g_stop="86255" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="152" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="195" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="391" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88374" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="746" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E736878" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86212" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTT</genome_strand>
        <mrna_strand>CTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E446804" ref_strand="+" ref_description="SGN-E446804 [cSTA-23-E5]">
      <seq>cttcaacactccctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgcgtcgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85929" stop="88424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86212" g_stop="86255" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.86"/>
            <acceptor a_prob="0.913" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="147" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="190" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="386" r_length="196" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88124" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="491" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E446804" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86212" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGAT</genome_strand>
        <mrna_strand>CTTCAA--CACTC-C--CTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGCGTCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E340271" ref_strand="+" ref_description="SGN-E340271 [cTOF-2-N14]">
      <seq>ttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagaagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagttgagaaccagtttagcaagtttatgcattttgtagactgatgtctatatcactcctagagggaagttntggggaatttctattagttggtgtatgagnnaaggaggtggttagttcccattttgtctatcagatgaactcaaatctttttttttttttgtgttgcaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85913" stop="88688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86213" g_stop="86255" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="152" r_length="109" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="195" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="391" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88388" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="763" r_length="372" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E340271" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86213" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAG-AGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGG-AGGATGT-GTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATC-TTTTTTTTTTTTGTGTTGCAATCAT</genome_strand>
        <mrna_strand>TTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGTTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTNTGGGGAATTTCTATTAGTTGGTGTATGAGNNAAGGAGGTGGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTTGTGTTGCAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E337412" ref_strand="+" ref_description="SGN-E337412 [cTOE-18-K14]">
      <seq>ttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85913" stop="88425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86213" g_stop="86255" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="151" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="194" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="390" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88125" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="496" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E337412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86213" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATC</genome_strand>
        <mrna_strand>TTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E312173" ref_strand="+" ref_description="SGN-E312173 [cTOA-11-B5]">
      <seq>ttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacattaaagatgagaaacttgtcctcaatatcttcgtcggtgagagtggagatcggcttacaagagcaacaaaggtcttggagcaacttatcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaagagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85913" stop="88391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86213" g_stop="86255" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="151" r_length="108" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="194" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="390" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88091" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="462" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E312173" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86213" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGC</genome_strand>
        <mrna_strand>TTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATTAAAGATGAGAAACTTGTCCTCAATATCTTCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAACAAAG.............................................................................................GTCTTGGAGCAACTTATCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAAGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E316646" ref_strand="+" ref_description="SGN-E316646 [cTOB-7-N13]">
      <seq>ttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaagcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85913" stop="88382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86213" g_stop="86255" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="151" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="194" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="390" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88082" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="453" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E316646" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86213" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATA</genome_strand>
        <mrna_strand>TTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAAGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E239682" ref_strand="+" ref_description="SGN-E239682 [cLED-33-C2]">
      <seq>ttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85913" stop="88344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86213" g_stop="86255" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="151" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="194" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="390" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88044" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="415" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E239682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86213" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTAT</genome_strand>
        <mrna_strand>TTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E592139" ref_strand="+" ref_description="SGN-E592139 [45866]">
      <seq>actccctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcatattgatcttggaattaagtatgacccttcaactggaatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaagattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaataagtcctcaaacattcagtgataagctgagaaccagcttagcaagtttatgcattgtgtagactgatatctatgtcattcctagaggaaagttttggtgcgttcatattagttggtgtatgagggaggatgtgttagttcccattttggctatcnatgaactctaaatctgtttctttgggttgaaatcatagtagaaccagtgatccagtattacgaaaagaacgttatgaaatacctaaattggtttcccaattggtgggtaatgaattggtgttcgttaaaaccatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85929" stop="88719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86225" g_stop="86255" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="140" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="183" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="379" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88410" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="767" r_length="388" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E592139" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86225" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCT-GCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCAT</genome_strand>
        <mrna_strand>ACTCCCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCATATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGAATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAAGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAATAAGTCCTCAAACATTCAGTGATAAGCTGAGAACCAGCTTAGCAAGTTTATGCATTGTGTAGACTGATATCTATGTCATTCCTAGAGGAAAGTTTTGGTGCGTTCATATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGGCTATC-NATGAACTCTAA--ATCTGTTTCTTTGGGTTGAAATCATAGTAGAACCAGTGATCCAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E298771" ref_strand="+" ref_description="SGN-E298771 [cLET-44-I1]">
      <seq>gctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtcatgaaaaaatagcttgctacgggactgtcaaaggtgagaaagctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85925" stop="87857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86225" g_stop="86255" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="139" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="182" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87557" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="266" r_length="84" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E298771" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86225" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGC</genome_strand>
        <mrna_strand>GCTGCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTCATGAAAAAATAGCTTGCTACGGGACTGTCAAAGGTGAGAAAGCTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E733048" ref_strand="+" ref_description="SGN-E733048 [LB03DD02]">
      <seq>cctgtaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagttgagaaccagcttagcaagtttatgcattttgtagactgatgtctatatcactcctagagggaagttttggggaatttctattagttggtgtatgagggaggatgtgttagttcccattttgtctatcagatgaactcaaatcttttttttttttgtgttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85935" stop="88683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86234" g_stop="86255" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="130" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="173" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="369" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88383" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="733" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E733048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86234" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCA</genome_strand>
        <mrna_strand>CCTGTAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E479007" ref_strand="+" ref_description="SGN-E479007 [cSTD-8-K17]">
      <seq>ctgcaatttcgtccagcaatggcttcagagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcatattgatcttggaattaagtatgacccttcaactggaatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaagattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaataagtcctcaaacattcagtgataagctgagaaccagcttagcaagtttatgccattgtgtagactgatatctatgtcattcctagaggaaagttttggtgcgttcattattagttggtgtatgagggaaggatgttgttagttcccattttggctatcaatgaactctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85935" stop="88661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86235" g_stop="86255" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="129" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="172" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="368" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88361" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="713" r_length="345" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E479007" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86235" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATG-CATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATT-TCTATTAGTTGGTGTATGAGGG-AGGATG-TGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAA</genome_strand>
        <mrna_strand>CTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCATATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGAATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAAGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAATAAGTCCTCAAACATTCAGTGATAAGCTGAGAACCAGCTTAGCAAGTTTATGCCATTGTGTAGACTGATATCTATGTCATTCCTAGAGGAAAGTTTTGGTGCGTTCATTATTAGTTGGTGTATGAGGGAAGGATGTTGTTAGTTCCCATTTTGGCTATCA-ATGAACTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E442876" ref_strand="+" ref_description="SGN-E442876 [cSTA-35-G4]">
      <seq>tgcaatttcgtccagcaatggcttcagagaagaaattgagtaaccctatgagggacattaagggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagccagcaaaggtcttggagcaaccttagcggccaatcacctgttttctccaaggcaaggtatacctgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctaccttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaactggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaagattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagaaccagcttagcaagtttacgcattgtgtagactgatatctatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85936" stop="88569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86236" g_stop="86255" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="130" r_length="110" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="174" r_length="44" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.883" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="372" r_length="198" r_score="0.934"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88271" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="624" r_length="252" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E442876" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86236" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAA-GGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAG-CAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAA-CTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATA-CTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCT-GCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCA</genome_strand>
        <mrna_strand>TGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCCAGCAAAG.............................................................................................GTCTTGGAGCAACCTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACCTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACCTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACTGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAAGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGAACCAGCTTAGCAAGTTTACGCATTGTGTAGACTGATATCTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E284175" ref_strand="+" ref_description="SGN-E284175 [cLER-16-C15]">
      <seq>caatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86047" stop="88424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86238" g_stop="86255" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="126" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="169" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="365" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88124" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="470" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E284175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86238" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGAT</genome_strand>
        <mrna_strand>CAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E473730" ref_strand="+" ref_description="SGN-E473730 [cSTB-33-F1]">
      <seq>caatttcgtccagcaatggcttcagagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaagagcatattgatcttggaattaagtatgacccttcaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86047" stop="88337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86238" g_stop="86255" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="126" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="169" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="365" r_length="196" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88037" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="383" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E473730" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86238" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGG</genome_strand>
        <mrna_strand>CAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAAGAGCATATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E403669" ref_strand="+" ref_description="SGN-E403669 [PPC-11-I20]">
      <seq>caatggcttcagagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcatattgatcttggaattaagtatgacccttcaactggaatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaagattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaataagtcctcaaacattcagtgataagctgagaaccagcttagcaagtttatgcattgtgtagactgatatctatgtcattcctagaggaaagttttggtgcgttcatattagttggtgtatgagggaggatgtgttagttcccattttggctatcaatgaactctaaatctgtttcttttttgttgaaatcatagtagaaccagtgatccagtatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86051" stop="88712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86251" g_stop="86255" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="113" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="156" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="352" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88412" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="743" r_length="391" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E403669" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86251" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCA</genome_strand>
        <mrna_strand>CAATG................................................................................................GCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCATATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGAATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAAGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAATAAGTCCTCAAACATTCAGTGATAAGCTGAGAACCAGCTTAGCAAGTTTATGCATTGTGTAGACTGATATCTATGTCATTCCTAGAGGAAAGTTTTGGTGCGTTCATATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGGCTATCA-ATGAACTCTAA-ATCTGTTTCTTTTTTGTTGAAATCATAGTAGAACCAGTGATCCAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E349684" ref_strand="+" ref_description="SGN-E349684 [cTOS-3-B5]">
      <seq>tggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataaagctgagtggcaacttttggaccagcttgtctcctggcaagtttatttttatgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86051" stop="88524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86254" g_stop="86255" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="110" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="153" r_length="43" r_score="0.884"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="349" r_length="196" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88218" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="548" r_length="199" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E349684" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86254" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAA</genome_strand>
        <mrna_strand>TG................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAA.............................................................................................GTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E351383" ref_strand="+" ref_description="SGN-E351383 [cTOS-12-I22]">
      <seq>tggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttngccgtcgtcgcaggtgcaagtctcgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86051" stop="88419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86254" g_stop="86255" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="110" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="153" r_length="43" r_score="0.884"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="349" r_length="196" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88119" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="449" r_length="100" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E351383" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86254" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTC</genome_strand>
        <mrna_strand>TG................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAA.............................................................................................GTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTNGCCGTCGTCGCAGGTGCAAGTCTCGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E440084" ref_strand="+" ref_description="SGN-E440084 [cSTA-14-N22]">
      <seq>aactctgctgccgcagctgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaaatctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86045" stop="88524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="153" r_length="108" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="196" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="392" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88020" g_stop="88226" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="599" r_length="207" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E440084" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAA</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAA.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA..............................................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAATCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E446391" ref_strand="+" ref_description="SGN-E446391 [cSTA-21-A10]">
      <seq>ctcagtacccctccaactctgctgccgcagctgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaaatctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86045" stop="88524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="167" r_length="108" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="210" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="406" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88020" g_stop="88225" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="612" r_length="206" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E446391" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGA</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAA.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA..............................................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAATCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E440083" ref_strand="+" ref_description="SGN-E440083 [cSTA-14-N18]">
      <seq>aactctgctgccgcagctgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaaatctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86045" stop="88477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="153" r_length="108" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="196" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="392" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88020" g_stop="88177" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="550" r_length="158" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E440083" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATG</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAA.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA..............................................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAATCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E336522" ref_strand="+" ref_description="SGN-E336522 [cTOE-4-L4]">
      <seq>tctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacaaggtcactaaggaggattcaatgaagtggttccaggtcaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86045" stop="88476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="150" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="193" r_length="43" r_score="0.884"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="389" r_length="196" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88020" g_stop="88176" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="546" r_length="157" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E336522" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATAT</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAA.............................................................................................GTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAAGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E306331" ref_strand="+" ref_description="SGN-E306331 [cLEX-13-K22]">
      <seq>gcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86045" stop="88439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="141" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="184" r_length="43" r_score="0.884"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="380" r_length="196" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88020" g_stop="88139" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="500" r_length="120" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E306331" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCAC</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAA.............................................................................................GTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E298651" ref_strand="+" ref_description="SGN-E298651 [cLET-44-G6]">
      <seq>ttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86045" stop="88432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="156" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="199" r_length="43" r_score="0.884"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="395" r_length="196" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88020" g_stop="88132" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="508" r_length="113" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E298651" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACA</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAA.............................................................................................GTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E437499" ref_strand="+" ref_description="SGN-E437499 [cSTA-4-A1]">
      <seq>cttcagagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcatattgatcttggaattaagtatgacccttcaactggaatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaagattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaataagtcctcaaacattcagtgataagctgagaaccagcttagcaagtttatgcattgtgtagactgatatctatgtcattcctagaggaaagttttggtgcgttcatattagttggtgtatgaggggaggatgtgtagttcccattttggctatcaatgaactctaaatctgtttcttttttgttgaatcatagtagaaccagtgatccagtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86053" stop="88715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86353" g_stop="86459" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="150" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="346" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88020" g_stop="88415" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="739" r_length="393" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E437499" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86353" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGA-GGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAA</genome_strand>
        <mrna_strand>CTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCATATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGAATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAAGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAATAAGTCCTCAAACATTCAGTGATAAGCTGAGAACCAGCTTAGCAAGTTTATGCATTGTGTAGACTGATATCTATGTCATTCCTAGAGGAAAGTTTTGGTGCGTTCATATTAGTTGGTGTATGAGGGGAGGATGTG-TAGTTCCCATTTTGGCTATCA-ATGAACTCTAA-ATCTGTTTCTTTTTTGTTG-AATCATAGTAGAACCAGTGATCCAGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E443877" ref_strand="+" ref_description="SGN-E443877 [cSTA-40-D15]">
      <seq>attgagcaaccccgtgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccacagcagcaaaagtcttggagcaacttaacggccgatcccctgatttctctaaagcaaggtatactgcgcgggcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86066" stop="87856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86366" g_stop="86459" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.984" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="137" r_length="43" r_score="0.884"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.883" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87474" g_stop="87556" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="220" r_length="83" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E443877" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86366" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATG</genome_strand>
        <mrna_strand>ATTGAGCAACCCCGTGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCACAGCAGCAAAA.............................................................................................GTCTTGGAGCAACTTAACGGCCGATCCCCTGATTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGCGCGGGCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E471270" ref_strand="+" ref_description="SGN-E471270 [cSTB-23-K24]">
      <seq>gcttccccatgagggatatcaaggtccagaagcttgtcctcaacatctccggcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaataccagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86071" stop="88397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86371" g_stop="86459" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.984" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="132" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="328" r_length="196" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88020" g_stop="88097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="406" r_length="78" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E471270" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86371" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCG</genome_strand>
        <mrna_strand>GCTTCCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGGCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAA.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACCAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA..............................................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E338371" ref_strand="+" ref_description="SGN-E338371 [cTOE-13-P14]">
      <seq>caaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttatcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaagtgcaagtctcgtgtcgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86072" stop="88424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86372" g_stop="86459" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="131" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="327" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88020" g_stop="88124" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="432" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E338371" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86372" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGAT</genome_strand>
        <mrna_strand>CAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTATCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAAGTGCAAGTCTCGTGTCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E461606" ref_strand="+" ref_description="SGN-E461606 [cPRO-9-C7]">
      <seq>gggacattaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcatattgatcttggaattaagtatgacccttcaactggaatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaagattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaataagtcctcaaacattcagtgataagctgagaaccagcttagcaagtttatgcattgtgtagactgatatctatgtcattcctagaggaaagttttggtgcgttcatattanttggtgtatgaagggaggatgtgttagttcccattttggctatcaatgaactctaaatctggttcctttttgttgaaatcatagtagaaccagtgatccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86083" stop="88707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86383" g_stop="86459" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="120" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="316" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88020" g_stop="88407" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="703" r_length="387" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E461606" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86383" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATG-AGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAG</genome_strand>
        <mrna_strand>GGGACATTAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCATATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGAATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAAGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAATAAGTCCTCAAACATTCAGTGATAAGCTGAGAACCAGCTTAGCAAGTTTATGCATTGTGTAGACTGATATCTATGTCATTCCTAGAGGAAAGTTTTGGTGCGTTCATATTANTTGGTGTATGAAGGGAGGATGTGTTAGTTCCCATTTTGGCTATCA-ATGAACTCTAA-ATCTGGTTCCTTTTTGTTGAAATCATAGTAGAACCAGTGATCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E339934" ref_strand="+" ref_description="SGN-E339934 [cTOF-3-F2]">
      <seq>aacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagttgagaaccagcttagcaagtttatgcattttgtagactgatgtctatatcactcctagagggaagttttggggaatttctattagttggtgtttgagggaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="86263" stop="88625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86563" g_stop="86595" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="229" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88020" g_stop="88325" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="535" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E339934" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86563" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATG</genome_strand>
        <mrna_strand>AACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTTTGAGGGAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E600497" ref_strand="+" ref_description="SGN-E600497 [53509]">
      <seq>agcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="87160" stop="88407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="224" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88020" g_stop="88107" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="312" r_length="88" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E600497" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGC</genome_strand>
        <mrna_strand>CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA..............................................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E438675" ref_strand="+" ref_description="SGN-E438675 [cSTA-9-K19]">
      <seq>gaaaagatagcttgctacgagactgtcacaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttggtgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcatattgatcttggaattaaggatgacccttcaactggaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="87212" stop="88343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87512" g_stop="87669" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88020" g_stop="88043" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="182" r_length="24" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E438675" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>182</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87512" e_stop="87669"/>
          <exon e_start="88020" e_stop="88043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTA</genome_strand>
        <mrna_strand>GAAAAGATAGCTTGCTACGAGACTGTCACAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGGTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCATATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GGATGACCCTTCAACTGGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E481257" ref_strand="-" ref_description="SGN-E481257 [cSTD-17-H1]">
      <seq>ggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcatattgatcttggaattaagtatgacccttcaactggaatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaagattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaataagtcctcaaacattcagtgataagctgagaaccagcttagcaagtttatgcattgtgtagactgatatctatgtcattcctagaggaaagttttggtgcgttcatattagttggtgtatgagggaggatgtgttagttcccattttggctatcaatgaactctaaatctgtttcttttttgttgaaatcatagtagaaccagtgatccagtattacgaaagacgttatgaatacctaattggtttccaattgtgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="87242" stop="88758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87542" g_stop="87669" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88020" g_stop="88450" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="558" r_length="430" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="590"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E481257" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481257" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87542" e_stop="87669"/>
          <exon e_start="88020" e_stop="88450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTC-AAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTAATTGGTTT-CAATTGTG</genome_strand>
        <mrna_strand>GGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCATATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGAATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAAGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAATAAGTCCTCAAACATTCAGTGATAAGCTGAGAACCAGCTTAGCAAGTTTATGCATTGTGTAGACTGATATCTATGTCATTCCTAGAGGAAAGTTTTGGTGCGTTCATATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGGCTATCA-ATGAACTCTAAATC-TGTTTCTTTTT-TGTTGAAATCATAGTAGAACCAGTGATCCAGTATTACGAAAGACGTTATGAATACCTAATTGGTTTCCAATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E558598" ref_strand="+" ref_description="SGN-E558598 [17962]">
      <seq>gtgaaaccggctgctttgggtttggtattccaggagcatattgatcttggaattaagtatgacccttcaactggaatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaagattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaataagtcctcaaacattcagtgataagctgagaaccagcttagcaagtttatgcattgtgtagactgatatctatgtcattcctagaggaaagttttggtgcgttcatattagttggtgtatgagggaggatgtgttagttcccattttggctatcaatgaactctaaatctgtttcttttttgttgaaatcatagtagaaccagtgatccagtattacgaaagacgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="87315" stop="88724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87615" g_stop="87669" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88020" g_stop="88425" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="460" r_length="404" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E558598" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87615" e_stop="87669"/>
          <exon e_start="88020" e_stop="88425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAACCGGCTGCTTTGGGTTTGGTATT-CAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTAC</genome_strand>
        <mrna_strand>GTGAAACCGGCTGCTTTGGGTTTGGTATTCCAGGAGCATATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGAATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAAGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAATAAGTCCTCAAACATTCAGTGATAAGCTGAGAACCAGCTTAGCAAGTTTATGCATTGTGTAGACTGATATCTATGTCATTCCTAGAGGAAAGTTTTGGTGCGTTCATATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGGCTATCA-ATGAACTCTAA-ATCTGTTTCTTTTTTGTTGAAATCATAGTAGAACCAGTGATCCAGTATTACGAAAGACGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E350466" ref_strand="+" ref_description="SGN-E350466 [cTOS-5-P14]">
      <seq>cacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagttgagaaccagcttagcaagtttatgcattttgtagactgatgtctatatcactcctagagggaagttttggggaatttctattagttggtgtatgagggaggatgtgttagttcccattttgtctatcagatgaactcaaatcttttttttttgtgttgcaatcatagtagaaccattaatctagcatcacaagagatgttacgaatacctaattggtttcaattgtggtgatgaatggtgttgttttcaacattttttttcaaattgtatttgggtgttggatgttcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="87350" stop="88812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87650" g_stop="87669" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88020" g_stop="88516" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="515" r_length="495" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E350466" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87650" e_stop="87669"/>
          <exon e_start="88020" e_stop="88516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTAATTGGTTTCAATTGTGGTGATGAATGGTGTTGTTTTCAACATTTTTTTTCAAATTGTATTTGGGTGTTGGATGTTCCATCTT</genome_strand>
        <mrna_strand>CACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATC--TTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTAATTGGTTTCAATTGTGGTGATGAATGGTGTTGTTTTCAACATTTTTTTTCAAATTGTATTTGGGTGTTGGATGTTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E349063" ref_strand="+" ref_description="SGN-E349063 [cTOS-2-E10]">
      <seq>cacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagttgagaaccagcttagcaagtttatgcattttgtagactgatgtctatatcactcctagagggaagttttggggaatttctattagttggtgtatgagggaggatgtgttagttcccattttgtctatcagatgaactcaaatcttttttttttgtgttgcaatcatagtagaaccattaatctagcatcacaagagatgttacgaatacctaattggtttcaattgtggtgatgaatggtgttgttttcaacattttttttcaaattgtatttgggtgttggatgttcaaaaaannaaanaaannaaaaaaaaaaaaaaaaaaanaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="87350" stop="88812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87650" g_stop="87669" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88020" g_stop="88511" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="510" r_length="490" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="550"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E349063" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87650" e_stop="87669"/>
          <exon e_start="88020" e_stop="88511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTAATTGGTTTCAATTGTGGTGATGAATGGTGTTGTTTTCAACATTTTTTTTCAAATTGTATTTGGGTGTTGGATGTTCC</genome_strand>
        <mrna_strand>CACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATC--TTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTAATTGGTTTCAATTGTGGTGATGAATGGTGTTGTTTTCAACATTTTTTTTCAAATTGTATTTGGGTGTTGGATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E350715" ref_strand="+" ref_description="SGN-E350715 [cTOS-7-O2]">
      <seq>cacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagttgagaaccagcttagcaagtttatgcattttgtagactgatgtctatatcactcctagagggaagttttggggaatttctattagttggtgtatgagggaggatgtgttagttcccattttgtctatcagatgaactcaaatcttttttttttgtgttgcaatcatagtagaaccattaatctagcatcacaagagatgttacgaatacctaattggtttcaattgtggtgatgaatggtgttgttttcaacattttttttcaaattgtatttgggtgttggatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="87350" stop="88809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87650" g_stop="87669" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88020" g_stop="88509" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="508" r_length="488" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E350715" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87650" e_stop="87669"/>
          <exon e_start="88020" e_stop="88509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTAATTGGTTTCAATTGTGGTGATGAATGGTGTTGTTTTCAACATTTTTTTTCAAATTGTATTTGGGTGTTGGATGTT</genome_strand>
        <mrna_strand>CACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATC--TTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTAATTGGTTTCAATTGTGGTGATGAATGGTGTTGTTTTCAACATTTTTTTTCAAATTGTATTTGGGTGTTGGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E613148" ref_strand="+" ref_description="SGN-E613148 [62919]">
      <seq>tcgggatccagcacagggtcacaaaggaagattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaataagtcctcaaacattcagtgataagctgagaaccagcttagcaagtttatgcattgtgtagactgatatctatgtcattcctagaggaaagttttggtgcgttcatattagttggtgtatgagggaggatgtgttagttcccattttggctatcaatgaactctaaatctgtttcttttttgttgaaatcatagtagaaccagtgatccagtattacgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="87818" stop="88719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88118" g_stop="88397" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="296" polyA_stop="308"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E613148" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88118" e_stop="88397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACC</genome_strand>
        <mrna_strand>TCGGGATCCAGCACAGGGTCACAAAGGAAGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAATAAGTCCTCAAACATTCAGTGATAAGCTGAGAACCAGCTTAGCAAGTTTATGCATTGTGTAGACTGATATCTATGTCATTCCTAGAGGAAAGTTTTGGTGCGTTCATATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGGCTATCA-ATGAACTCTAA-ATCTGTTTCTTTTTTGTTGAAATCATAGTAGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E283271" ref_strand="-" ref_description="SGN-E283271 [cLER-12-M23]">
      <seq>ggatccagcacagggtcacaaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagttgagaaccagcttagcaagtttatgcattttgtagactgatgtctatatcactcctagagggaagttttggggaatttttattagttggtgtataagggaggatgtgttagttcccattttgtctatcagatgaactcaaatcttttttttttttgtgtggcaatcatagtagaaccattaatctagcatcacaagagatgttacgaatacctaattggtttcaattgtggtaatgaatggtgttgttttcaacattttttttcaaattgtatttgggtgttggatgttccatattgggcatgaagtgcaattatgcaaccccnnaccatataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="87821" stop="88842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88121" g_stop="88543" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="463"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E283271" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283271" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88121" e_stop="88543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTAATTGGTTTCAATTGTGGTGATGAATGGTGTTGTTTTCAACATTTTTTTTCAAATTGTATTTGGGTGTTGGATGTTCCATCTTTGGCATGAAGTGCAATTATGCAACCCA</genome_strand>
        <mrna_strand>GGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTTTATTAGTTGGTGTATAAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTGGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTAATTGGTTTCAATTGTGGTAATGAATGGTGTTGTTTTCAACATTTTTTTTCAAATTGTATTTGGGTGTTGGATGTTCCATATTGGGCATGAAGTGCAATTATGCAACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E277575" ref_strand="-" ref_description="SGN-E277575 [cLER-6-G22]">
      <seq>atgtgatagagattgagcggggagacactctttggggactctctagaaaatatggggtgtcaatcgaggaaattaaggacgctaacgggcttgaaggggacaccatctatgctgggaagaaacttgtaataccctaacgtgctcaatcttgttgattcttgttgttgtattgttggttatcctgtgaggtttgtattgtttttttcgttgaactattgggtatgttgtattaggggagagattttgtagtttgaaacgaacggtatggctggtacgagagatagggatgtgagattggtttgagctaatgtaaaatggaaaattttagctgctatgatgaacttgtatctcgtctcgcaatattctatcatgtagaagaaatgatgattctccaaattctctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="94116" stop="35457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93816" g_stop="93761" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93760" i_stop="93347" i_length="414">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93346" g_stop="92997" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="406" r_length="350" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92996" i_stop="92887" i_length="110">
            <donor d_prob="0.864" d_score="0.94"/>
            <acceptor a_prob="0.941" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92886" g_stop="92859" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="434" r_length="28" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E277575" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277575" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93816" e_stop="93761"/>
          <exon e_start="93346" e_stop="92997"/>
          <exon e_start="92886" e_stop="92859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGATAGAGATTGAGCGGGGAGACACTCTTTGGGGACTCTCTAGAAAATATGGGGTATGCATTCGCATTGCTATTAATTTGACTTGATACTGAGTTTAAGAAATAAGAACTTTTTTAAAAAATCTTTCTTTTATACTGACTAAAAAGTAAAAGGGACTGTATAAATTGAGACAGATTGAGTATAAAATTATGAATGATACCATTGATATTTGGTAAGTTTAAAAATAATACTTTTCAAATTATTTGATTAGTAAAAATGAGACGTTTATATCAGGAAATCAATGTCCAATTCCTTAGATGTTTTGATCTTTACACTGGAAACTCAATATTCTTTTCTGGACAAATGATGTATCTTGTTGAATATTTGGTTTATCAGTACCCATGAAAAAAATATATCAGGAGGAAGTTTCTTCTTTTACACATTTATTGGCCTGGTGATAATTTGAATGTATGATTGGATTTCATTAGGTGTCAATCGAGGAAATTAAGGACGCTAACGGGCTTGAAGGGGACACCATCTATGCTGGGAAGAAACTTGTAATACCCTAACGTGCTCAATCTTGTTGATTCTTGTTGTTGTATTGTTGGTTATCCTGTGAGGTTTGTATTGTTTTTTTCGTTGAACTATTGGGTATGTTGTATTAGGGGAGAGATTTTGTAGTTTGAAACGAACGGTATGGCTGGTACGAGAGATAGGGATGTGAGATTGGTTTGAGCTAATGTAAAATGGAAAATTTTAGCTGCTATGATGAACTTGTATCTCGTCTCGCAATATTCTATCATGTAGAAGAAATGATGATTCTCCAAATTCTCTATCGGTTAGTTGTCCTTTATCATGAGTATGATTCTAATTCTCTTTGTTTAATTGCGTCTTCCATGGAGTTATATTAGGTAGCAAATCAATCTTCCAATTTCATTTCTGTTGCAGAAGTAAGGGAAATGTTGAAAGCAACAAG</genome_strand>
        <mrna_strand>ATGTGATAGAGATTGAGCGGGGAGACACTCTTTGGGGACTCTCTAGAAAATATGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAATCGAGGAAATTAAGGACGCTAACGGGCTTGAAGGGGACACCATCTATGCTGGGAAGAAACTTGTAATACCCTAACGTGCTCAATCTTGTTGATTCTTGTTGTTGTATTGTTGGTTATCCTGTGAGGTTTGTATTGTTTTTTTCGTTGAACTATTGGGTATGTTGTATTAGGGGAGAGATTTTGTAGTTTGAAACGAACGGTATGGCTGGTACGAGAGATAGGGATGTGAGATTGGTTTGAGCTAATGTAAAATGGAAAATTTTAGCTGCTATGATGAACTTGTATCTCGTCTCGCAATATTCTATCATGTAGAAGAAATGATGATTCTCCAAATTCTCTAAAA..............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E723031" ref_strand="+" ref_description="SGN-E723031 [FC19AE10]">
      <seq>cggccgattgctttccacttttctccttcaaaaaatcgaaccagatcgatcgagcgatgtggaataatcgacgtccgccggaaaatggctccggtaatgaggaagacaactccgatcaggagaaaactatagcaaaggcagctggtttcgtggtcgtttcgggaatcgcgatgagcattctcaaagcactcaatccattcaaccatcaaaacatcaacagtaaaaccagtgaagtaaaggcaatagttttcgagtcagctccatctcaaactcagcctcaagtgcttcaacaatgccaaccagagcctgagctcatagtcaagaaaccaaattgttgcgtggagaaaagagagaagaaggaagtttcaccaaatgtgatagagattgagcggggagacactctttggggactctctagaaaatatggggtgtcaatcgaggaaattaaggacgctaacgggcttgaaggggacaccatctatgctgggaagaaacttgtaataccctaacgtgctcaatcttgttgattcttgttgttgtattgttggttatcctgtgaggtttgtattgtttttttcgttgaactattgggtatgttgtattaggggagagattttgtagtttgaaacgaacggtatggctggtacgagagatagggatgtgagattggtttgagctaatgtaaaatggaaaattttagctgctatgatgaacttgtatctcgtctcgcaatattctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="94584" stop="92735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94294" g_stop="93971" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93970" i_stop="93866" i_length="105">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93865" g_stop="93761" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="428" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93760" i_stop="93347" i_length="414">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93346" g_stop="93035" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="740" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E723031" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94294" e_stop="93971"/>
          <exon e_start="93865" e_stop="93761"/>
          <exon e_start="93346" e_stop="93035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAAACCCCTTTCCACTTTTCTTCTTCCAAAAAATCGAACCAGATCGATCGAGCGATGTGGAATAATCGACGTCCGCCGGAAAATGGCTCCGGTAATGAGGAAGACAACTCCGATCAGGAGAAAACTATAGCAAAGGCAGCTGGTTTCGTGGTCGTTTCGGGAATCGCGATGAGCATTCTCAAAGCACTCAATCCATTCAACCATCAAAACATCAACAGTAAAACCAGTGAAGTAAAGGCAATAGTTTTCGAGTCAGCTCCATCTCAAACTCAGCCTCAAGTGCTTCAACAATGCCAACCAGAGCCTGAGCTCATAGTCAAGGTTGTGACTAACTTGCTTGTAATTGCATTTTGTACATTTACAAAAATTTGTGTTCAATCGTTTTAAGTTTTTCGCATTAATGTATTTGCTTTGTTTTCTCTTTAGAAACCAAATTGTTGCGTGGAGAAAAGAGAGAAGAAGGAAGTTTCACCAAATGTGATAGAGATTGAGCGGGGAGACACTCTTTGGGGACTCTCTAGAAAATATGGGGTATGCATTCGCATTGCTATTAATTTGACTTGATACTGAGTTTAAGAAATAAGAACTTTTTTAAAAAATCTTTCTTTTATACTGACTAAAAAGTAAAAGGGACTGTATAAATTGAGACAGATTGAGTATAAAATTATGAATGATACCATTGATATTTGGTAAGTTTAAAAATAATACTTTTCAAATTATTTGATTAGTAAAAATGAGACGTTTATATCAGGAAATCAATGTCCAATTCCTTAGATGTTTTGATCTTTACACTGGAAACTCAATATTCTTTTCTGGACAAATGATGTATCTTGTTGAATATTTGGTTTATCAGTACCCATGAAAAAAATATATCAGGAGGAAGTTTCTTCTTTTACACATTTATTGGCCTGGTGATAATTTGAATGTATGATTGGATTTCATTAGGTGTCAATCGAGGAAATTAAGGACGCTAACGGGCTTGAAGGGGACACCATCTATGCTGGGAAGAAACTTGTAATACCCTAACGTGCTCAATCTTGTTGATTCTTGTTGTTGTATTGTTGGTTATCCTGTGAGGTTTGTATTGTTTTTTTCGTTGAACTATTGGGTATGTTGTATTAGGGGAGAGATTTTGTAGTTTGAAACGAACGGTATGGCTGGTACGAGAGATAGGGATGTGAGATTGGTTTGAGCTAATGTAAAATGGAAAATTTTAGCTGCTATGATGAACTTGTATCTCGTCTCGCAATATTCTAT</genome_strand>
        <mrna_strand>CGGCCGATTGCTTTCCACTTTTCTCCTT-CAAAAAATCGAACCAGATCGATCGAGCGATGTGGAATAATCGACGTCCGCCGGAAAATGGCTCCGGTAATGAGGAAGACAACTCCGATCAGGAGAAAACTATAGCAAAGGCAGCTGGTTTCGTGGTCGTTTCGGGAATCGCGATGAGCATTCTCAAAGCACTCAATCCATTCAACCATCAAAACATCAACAGTAAAACCAGTGAAGTAAAGGCAATAGTTTTCGAGTCAGCTCCATCTCAAACTCAGCCTCAAGTGCTTCAACAATGCCAACCAGAGCCTGAGCTCATAGTCAAG.........................................................................................................AAACCAAATTGTTGCGTGGAGAAAAGAGAGAAGAAGGAAGTTTCACCAAATGTGATAGAGATTGAGCGGGGAGACACTCTTTGGGGACTCTCTAGAAAATATGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAATCGAGGAAATTAAGGACGCTAACGGGCTTGAAGGGGACACCATCTATGCTGGGAAGAAACTTGTAATACCCTAACGTGCTCAATCTTGTTGATTCTTGTTGTTGTATTGTTGGTTATCCTGTGAGGTTTGTATTGTTTTTTTCGTTGAACTATTGGGTATGTTGTATTAGGGGAGAGATTTTGTAGTTTGAAACGAACGGTATGGCTGGTACGAGAGATAGGGATGTGAGATTGGTTTGAGCTAATGTAAAATGGAAAATTTTAGCTGCTATGATGAACTTGTATCTCGTCTCGCAATATTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E430424" ref_strand="+" ref_description="SGN-E430424 [STM-53-N3]">
      <seq>gcgatgtggaataatcgacggccgccggaaaatggctccggtaacgaggaagacaactccgaacaggagaaaaccatagcaaaggcagctggtttcgtggtcgtctcgggaatcgcgatgagcattctcaaagcactcaatccattcaacaatcaaagcatcaacagtaaaatcagtgaagtaaaggcaacagttttcgagtcagctccatctcaaactcagcctcaagtgcttcaacaatgccagccagagcctgagcccatcgtcaagaaacccagttgttgtgcggagcgaagagcgaaggaagtgtcaccaaatgtgatagagattgagcggggagatacactttggggattctctagaaaatatggggtatcaattgaggaaattaaggaggctaacgggcttgaaggggacaccatctatgctggaaagaaacttgtaataccttaatgggctccttctcattggttcttggtggtggagcggtgcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="94540" stop="92923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94240" g_stop="93971" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93970" i_stop="93866" i_length="105">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93865" g_stop="93761" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="372" r_length="102" r_score="0.867"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93760" i_stop="93347" i_length="414">
            <donor d_prob="0.952" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93346" g_stop="93223" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="496" r_length="124" r_score="0.847"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E430424" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94240" e_stop="93971"/>
          <exon e_start="93865" e_stop="93761"/>
          <exon e_start="93346" e_stop="93223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATGTGGAATAATCGACGTCCGCCGGAAAATGGCTCCGGTAATGAGGAAGACAACTCCGATCAGGAGAAAACTATAGCAAAGGCAGCTGGTTTCGTGGTCGTTTCGGGAATCGCGATGAGCATTCTCAAAGCACTCAATCCATTCAACCATCAAAACATCAACAGTAAAACCAGTGAAGTAAAGGCAATAGTTTTCGAGTCAGCTCCATCTCAAACTCAGCCTCAAGTGCTTCAACAATGCCAACCAGAGCCTGAGCTCATAGTCAAGGTTGTGACTAACTTGCTTGTAATTGCATTTTGTACATTTACAAAAATTTGTGTTCAATCGTTTTAAGTTTTTCGCATTAATGTATTTGCTTTGTTTTCTCTTTAGAAACCAAATTGTTGCGTGGAGAAAAGAGAGAAGAAGGAAGTTTCACCAAATGTGATAGAGATTGAGCGGGGAGACACTCTTTGGGGACTCTCTAGAAAATATGGGGTATGCATTCGCATTGCTATTAATTTGACTTGATACTGAGTTTAAGAAATAAGAACTTTTTTAAAAAATCTTTCTTTTATACTGACTAAAAAGTAAAAGGGACTGTATAAATTGAGACAGATTGAGTATAAAATTATGAATGATACCATTGATATTTGGTAAGTTTAAAAATAATACTTTTCAAATTATTTGATTAGTAAAAATGAGACGTTTATATCAGGAAATCAATGTCCAATTCCTTAGATGTTTTGATCTTTACACTGGAAACTCAATATTCTTTTCTGGACAAATGATGTATCTTGTTGAATATTTGGTTTATCAGTACCCATGAAAAAAATATATCAGGAGGAAGTTTCTTCTTTTACACATTTATTGGCCTGGTGATAATTTGAATGTATGATTGGATTTCATTAGGTGTCAATCGAGGAAATTAAGGACGCTAACGGGCTTGAAGGGGACACCATCTATGCTGGGAAGAAACTTGTAATACCCTAACGTGCTCAATCTTGTTGATTCTTGTTGTTGTATTGTTGGTTAT</genome_strand>
        <mrna_strand>GCGATGTGGAATAATCGACGGCCGCCGGAAAATGGCTCCGGTAACGAGGAAGACAACTCCGAACAGGAGAAAACCATAGCAAAGGCAGCTGGTTTCGTGGTCGTCTCGGGAATCGCGATGAGCATTCTCAAAGCACTCAATCCATTCAACAATCAAAGCATCAACAGTAAAATCAGTGAAGTAAAGGCAACAGTTTTCGAGTCAGCTCCATCTCAAACTCAGCCTCAAGTGCTTCAACAATGCCAGCCAGAGCCTGAGCCCATCGTCAAG.........................................................................................................AAACCCAGTTGTTGTGCGGAG-CGA-AGAG-CGAAGGAAGTGTCACCAAATGTGATAGAGATTGAGCGGGGAGATACACTTTGGGGATTCTCTAGAAAATATGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATTGAGGAAATTAAGGAGGCTAACGGGCTTGAAGGGGACACCATCTATGCTGGAAAGAAACTTGTAATACCTTAATGGGCTCCTTCTCATTGGTTCTTGGTGGTGGAGCGGTGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E615500" ref_strand="+" ref_description="SGN-E615500 [65299]">
      <seq>ctcagtctgaattctgaaatccctaaaacccctttccacttttcttcttccaaaagcgaaccagatcgatcgagcgatgtggaataatcgacggccgccggaaaatggctccggtaacgaggaagacaaccccgatcaggagaaaaccatagcaaaggcagctggtttcgtggtggtctcgggaatcgcgatgagcattctcaaagcactaaatccattcaacaatcaaaacatcaacagtaaaaccagtgaagtaaaggcaacagttttcgagtcagctccatctcaaaactcagcctcaagtgcttcaacaatgccagccagagcctgagcccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="94605" stop="93678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94315" g_stop="93977" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E615500" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94315" e_stop="93977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACCTCAGTCTGAAATCCCTAAAACCCCTTTCCACTTTTCTTCTTCCAAAAAATCGAACCAGATCGATCGAGCGATGTGGAATAATCGACGTCCGCCGGAAAATGGCTCCGGTAATGAGGAAGACAACTCCGATCAGGAGAAAACTATAGCAAAGGCAGCTGGTTTCGTGGTCGTTTCGGGAATCGCGATGAGCATTCTCAAAGCACTCAATCCATTCAACCATCAAAACATCAACAGTAAAACCAGTGAAGTAAAGGCAATAGTTTTCGAGTCAGCTCCATCTC-AAACTCAGCCTCAAGTGCTTCAACAATGCCAACCAGAGCCTGAGCTCATA</genome_strand>
        <mrna_strand>CTCAGTCTGAATTCTGAAATCCCTAAAACCCCTTTCCACTTTTCTTCTTCCAAAA--GCGAACCAGATCGATCGAGCGATGTGGAATAATCGACGGCCGCCGGAAAATGGCTCCGGTAACGAGGAAGACAACCCCGATCAGGAGAAAACCATAGCAAAGGCAGCTGGTTTCGTGGTGGTCTCGGGAATCGCGATGAGCATTCTCAAAGCACTAAATCCATTCAACAATCAAAACATCAACAGTAAAACCAGTGAAGTAAAGGCAACAGTTTTCGAGTCAGCTCCATCTCAAAACTCAGCCTCAAGTGCTTCAACAATGCCAGCCAGAGCCTGAGCCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E421676" ref_strand="-" ref_description="SGN-E421676 [STM-33-C12]">
      <seq>ccaagcagcaactctttgctagaattgttggtggacttggtggaagagctgcagaagaagtgatctttggtgaacctgaagtgaccactggtgctgctggtgatttgcagcagatcactggtttggcaaaacagatggttgtcacttttgggatgtctgaacttggcccatggtcactcatggatacttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcaatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccatatccgcagcaaccgtgaagcaattgataagattgtggaagtccttcttgaaaaggagacaatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgggtccctgctgctgtacctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcatatacacttatccacctaattgatctagagtataaacaatagactataagaaagttaaaacacttttgtgcatttgtgttggaagcaatttttcacatttgaaatagaaatagtcttttcttcattgaaaaaaaaagtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="94639" stop="96213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94874" g_stop="95007" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95008" i_stop="95400" i_length="393">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95401" g_stop="95926" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="652" r_length="518" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E421676" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421676" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94874" e_stop="95007"/>
          <exon e_start="95401" e_stop="95926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGTGAACCTGAAGTGACCACTGGTGCTGCTGGTGATTTGCAGCAGATCACTGGTTTGGCAAAACAGGTATATATGCTCACTGCCTTTTTTGTGTTAAGGATTCTGGAACGGAATATATGTTGAGGTAATCTGTGGAGACTAGAAATTCTACAGAGTGATTGGTTTTGAATTAACCTCTACTTCCCGTTTCCTTCAAAAGATTATAGAGATAAGAGCAATACAATTATTCCCTCTGTTTCAATTTATGTGGTTTTGTTTGAAAAGATTTTTGGGTTTGTGATCTTAAACATGCCATGAAACTTCTGTGGCTATAAAGTTAAAATTGTTTTCAAATATAGAAACGTTAACATTCATTTTGGATAAGACTAACAACAGCATAGTGTCACATTATTGGAAAGGAGCGAGTAGTTTTATCTTCTTTTTGACTTAGTTCTGTAAAATGACAAACTGTTCATGCAGATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAGTTGT</genome_strand>
        <mrna_strand>CCAAGCAGCAACTCTTTGCTAGAATTGTTGGTGGACTTGGTGGAAGAGCTGCAGAAGAAGTGATCTTTGGTGAACCTGAAGTGACCACTGGTGCTGCTGGTGATTTGCAGCAGATCACTGGTTTGGCAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGTCACTTTTGGGATGTCTGAACTTGGCCCATGGTCACTCATGGATACTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCAATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCATATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTTCTTGAAAAGGAGACAATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGGGTCCCTGCTGCTGTACCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCATATACACTTATCCACCTAA-TTGATCTAGAGTATAAAC---A-ATAGACTATAAGAAAGTT--AAAACACTTTTGTGCATTTGTGTTGGAAGCAATTTTTCACATTTGAAATAGAAATAGTCTTTTCTTCATTGAAAAAAAAAG-TTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E393450" ref_strand="+" ref_description="SGN-E393450 [TUS-38-A4]">
      <seq>tttttttttttacagtgaagaaaagactagttctatatcaaatgtgaaaatttgcttcatacacaaatgcacaaaagtgttttttaactttcttatagtctatatattgtttatactctagatcaaattagggggataagtgtatgtgaattgtacaagttgcagtatatgttcaagctattatacagctgctggggtaggaacagcagcagggacgcggttttcagcaggaatttcaacaaattctgagagaatagcacggaattcatctccagtcatcgtctccttttcaaggaggacttccacaatcttatcaattgcttcacggttgctgcggatttggctcaatgcaatctcatatgcactgtctgaaagcttcttcacagcaacatcaatgtcttcagctagcttttctgacatcgagttcctggccatcattctcatgattacatcaccactttgggctgaagaatccatgagggaccacgggccaagttcagacataccaaaagtgacaaccatctgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="96213" stop="95098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95922" g_stop="95392" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E393450" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95922" e_stop="95392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTAGCATTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGCATGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E396240" ref_strand="+" ref_description="SGN-E396240 [TUS-41-M1]">
      <seq>tttttttttttacagtgaagaaaagactagttctatatcaaatgtgaaaatttgcttcatacacaaatgcacaaaagtgttttttaactttcttatagtctatatattgtttatactctagatcaaattagggggataagtgtatgtgaattgtacaagttgcagtatatgttcaagctattatacagctgctggggtaggaacagcagcagggacgcggttttcagcaggaatttcaacaaattctgagagaatagcacggaattcatctccagtcatcgtctccttttcaaggaggacttccacaatcttatcaattgcttcacggttgctgcggatttggctcaatgcaatctcatatgcactgtctgaaagcttcttcacagcaacatcaatgtcttcagctagcttttctgacatcgagttcctggccatcattctcatgattacatcaccactttgggctgaagaatccatgagggaccacgggccaagttcagacataccaaaagtgacaaccatctgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="96213" stop="95098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95922" g_stop="95392" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E396240" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95922" e_stop="95392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTAGCATTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGCATGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E374418" ref_strand="+" ref_description="SGN-E374418 [TUS-38-B4]">
      <seq>ttttttttttacagtgaataaaagactagttctatatcaaatgtgaaaatttgcttcatacacaaatgcacaaaagtgttttttaactttcttatagtctatatattgtttatactctagatcaaattagggggataagtgtatgtgaattgtacaagttgcagtatatgttcaagctattatacagctgctggggtaggaacagcagcagggacgcggttttcagcaggaatttcaacaaattctgagagaatagcacggaattcatctccagtcatcgtctccttttcaaggaggacttccacaatcttatcaattgcttcacggttgctgcggatttggctcaatgcaatctcatatgcactgtctgaaagcttcttcacagcaacatcaatgtcttcagctagcttttctgacatcgagttcctggccatcattctcatgattacatcaccactttgggctgaagaatccatgagggaccacgggccaagttcagacataccaaaagtgacaaccatctgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="96213" stop="95098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95921" g_stop="95392" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E374418" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95921" e_stop="95392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAGCATTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGCATGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTACAGTGAATAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E374419" ref_strand="+" ref_description="SGN-E374419 [TUS-38-B4]">
      <seq>caaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95092" stop="96213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95401" g_stop="95922" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="530" r_length="522" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E374419" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95401" e_stop="95922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAG</genome_strand>
        <mrna_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E390186" ref_strand="+" ref_description="SGN-E390186 [TUS-41-M1]">
      <seq>gcaaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95098" stop="96213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95401" g_stop="95922" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="531" r_length="522" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E390186" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95401" e_stop="95922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAG</genome_strand>
        <mrna_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E393233" ref_strand="+" ref_description="SGN-E393233 [TUS-38-A4]">
      <seq>gcaaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95098" stop="96213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95401" g_stop="95922" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="531" r_length="522" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E393233" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95401" e_stop="95922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAG</genome_strand>
        <mrna_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E293388" ref_strand="+" ref_description="SGN-E293388 [cLET-18-J23]">
      <seq>caaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagctggaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacctttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95092" stop="96213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95401" g_stop="95912" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="520" r_length="512" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="521" polyA_stop="531"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E293388" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95401" e_stop="95912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTA</genome_strand>
        <mrna_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTGGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACCTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E734413" ref_strand="+" ref_description="SGN-E734413 [LB12CD10]">
      <seq>ctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95143" stop="96207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95443" g_stop="95907" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="483"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E734413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95443" e_stop="95907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCA</genome_strand>
        <mrna_strand>CTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E302032" ref_strand="+" ref_description="SGN-E302032 [cLEX-3-O6]">
      <seq>ggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatgcgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttgctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95148" stop="96192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95448" g_stop="95896" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E302032" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95448" e_stop="95896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAG</genome_strand>
        <mrna_strand>GGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATGCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTGCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E279565" ref_strand="+" ref_description="SGN-E279565 [cLER-5-B20]">
      <seq>tcgcatgcaaagagattgatgattcttcagcccaaagtggtgatgttgtcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaacaagctttcaaacagtgcatatgagattgcattgagccaaattcgcatcaaccgtgaagcaattgataagattgtggaagtcctgcttgaaaaggagacgatgactggagatgaattccgagctattctctcataatttgctggaattgctgctgaaaaccgcgtccctgctgctgttcctaccccaccagctgtataatagctcgaacatatactgcaactggaacaagtcacatacactcatgcccctaatccgagctacagtataaacaatgtatagactataagaaggttaaaaaacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95144" stop="96148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95459" g_stop="95848" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="420" r_length="390" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E279565" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95459" e_stop="95848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTT</genome_strand>
        <mrna_strand>CCCAAAGTGGTGATGTTGTCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAACAAGCTTTCAAACAGTGCATATGAGATTGCATTGAGCCAAATTCGCATCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTGCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGAGCTATTCTCTCATAATTTGCTGGAATTGCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCACCAGCTGTATAATAGCTCGAACATATACTGCAACTGGAACAAGTCACATACACTCATGCCCCTAATCCGAGCTACAGTATAAACAATGTATAGACTATAAGAAGGTTAAAAAACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E607650" ref_strand="+" ref_description="SGN-E607650 [23620]">
      <seq>caggaacttcaatgtcagaaaagcttagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgaggattgcattgaggccaaaatccgcagcaaccgtgaagcaattgataagattgtggaagtccttcttgaaaaggagacaatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgtacctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcatatacacttatccacctaattgatctagagtataaacaatagactataagaaagttaaaacacttttgtgcatttgtgttggaagcaattttttcacatttgaaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95193" stop="96192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95493" g_stop="95897" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E607650" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95493" e_stop="95897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAC-TCGATGTCAGAAAAGC-TAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGA-GATTGCATTGA-GCCAA-ATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAA-ATTTTCACATTTGATATAGAACTAGT</genome_strand>
        <mrna_strand>CAGGAACTTCAATGTCAGAAAAGCTTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGGATTGCATTGAGGCCAAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTTCTTGAAAAGGAGACAATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTACCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCATATACACTTATCCACCTAA-TTGATCTAGAGTATAAAC---A-ATAGACTATAAGAAAGTT--AAAACACTTTTGTGCATTTGTGTTGGAAGCAATTTTTTCACATTTGAAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E734039" ref_strand="+" ref_description="SGN-E734039 [LB11CE03]">
      <seq>actcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95198" stop="96192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95498" g_stop="95895" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E734039" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95498" e_stop="95895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTA</genome_strand>
        <mrna_strand>ACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E715915" ref_strand="+" ref_description="SGN-E715915 [FB15CE04]">
      <seq>cgagcgcatcattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95226" stop="96213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95515" g_stop="95921" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E715915" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95515" e_stop="95921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGA</genome_strand>
        <mrna_strand>CGAGC-GCA-TCATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E218307" ref_strand="-" ref_description="SGN-E218307 [cLEL-23-L11]">
      <seq>gacattgatgttgctgtaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttccctgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95224" stop="96213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95524" g_stop="95912" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="404"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E218307" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218307" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95524" e_stop="95912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTA</genome_strand>
        <mrna_strand>GACATTGATGTTGCTGT-AAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCCCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E217807" ref_strand="-" ref_description="SGN-E217807 [cLEL-23-L11]">
      <seq>agctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcnctgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95246" stop="96213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95546" g_stop="95912" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="383"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E217807" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217807" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95546" e_stop="95912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTA</genome_strand>
        <mrna_strand>AGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCNCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E605196" ref_strand="+" ref_description="SGN-E605196 [21110]">
      <seq>aactagtgatccccgggctgaggaatcggcacgaggccaatccgcagcaacgtgaagcaattgataagattgtggaagtccttcttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgtacctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcatatacacttatccacctaattgatctagagtataaacaatagactataagaaagttaaaacacttttgtgcatttgtgttggaagcaatttcacatttgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95277" stop="96192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95580" g_stop="95891" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="337" r_length="301" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E605196" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95580" e_stop="95891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGA</genome_strand>
        <mrna_strand>CC-AATCCGCAGCAA-CGTGAAGCAATTGATAAGATTGTGGAAGTCCTTCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTACCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCATATACACTTATCCACCTAA-TTGATCTAGAGTATAAAC---A-ATAGACTATAAGAAAGTT--AAAACACTTTTGTGCATTTGTGTTGGAAGC-AA-TTTCACATTTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E616436" ref_strand="+" ref_description="SGN-E616436 [66245]">
      <seq>gagacaatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgtacctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcatatacacttatccacctaattgatctagagtataaacaatagactataagaaagttaaaacacttttgtgcatttgtgttggaagcaatttttcacatttgaaatagaactagtcttttcttcattgtaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95338" stop="96213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95638" g_stop="95916" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E616436" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95638" e_stop="95916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGC</genome_strand>
        <mrna_strand>GAGACAATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTACCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCATATACACTTATCCACCTAA-TTGATCTAGAGTATAAAC---A-ATAGACTATAAGAAAGTT--AAAACACTTTTGTGCATTTGTGTTGGAAGCAATTTTTCACATTTGAAATAGAACTAGTCTTTTCTTCATTGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E261252" ref_strand="+" ref_description="SGN-E261252 [cLEG-68-K3]">
      <seq>gatgactggagatgaattccgtgctattctctcacaatctgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccaccaactgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagacttttcttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="95343" stop="96209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95643" g_stop="95909" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E261252" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95643" e_stop="95909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACT</genome_strand>
        <mrna_strand>GATGACTGGAGATGAATTCCGTGCTATTCTCTCACAATCTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCACCAACTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGACTTTTCTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E574054" ref_strand="+" ref_description="SGN-E574054 [33460]">
      <seq>gaaatatttgcataaacttatatccacacaatgcatttgataggaccataaaagagcagagaaatcttctcaattcacatcattaaccatatactgtacagcaagaagactaccaaaaccactgactcaatccaacatagttgatgcttattgctagtcacagccatgcccactgacacaatgctaatctaaactaggtccacatgcgaccaactttaaaaaagagaacttcaatatactaccaattcaagtatcaagcagccacaaagcagtcttcagttaaagctttgccaccacaattggtgtaaacaacctgaacttcatttagttccagcataattcagaatgatcaaatctttcgtctgtactaataaattctctacctcatttggtcttacagaaaccatgtctaacatctttggctcgtcccacccctcttgtggttctctgattctgcataaatgatagtcgccctccagcacttgatggtttcttttcaagcagtcttaggaatgcgcattcaattctatgtttctccccttctcagagatatattacatccaggctaatgataaaagaatagaacaatcagaaaggaaagaatgattgaacagaatttgagactccactttcttaaacctcgaaaccgaactcaaatggaccaatgtgccatcttcagaactggaatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="98349" stop="99646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98649" g_stop="99346" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E574054" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98649" e_stop="99346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTTTGCATCAACTTATATCCACACAATGCATTTGATAGGACCATAAAAGAGCAGAAAAATCTTCTCAATTCACATCATTAACCATATACTGTACAGCAAGAAGACTACCAAAACCATGAACTCAATCCAACATAGTAGATGCTTATTGCTAGTCACAGCCATGCCCACTGACACCATGCTAATCTAAACTAGGTCCACATGCGACCAACTTTAAAACAAAGAACTTCAATATACTACCAATTCAAGTACCAAGCAGCCACAAAGCAGTCTTCAGTTAAAGCTTTGCCACCACAATTGGTGTAAACAAACCGAACAACGAGAACTTCATTTAGTTCCAGCATAATTCAGGTATGATCAAATCTTCCATCTGTACT---GA--TCTCTGCCTCATTTGGTTTTACAGAAACCATGTCTAACATCTTTGGCTCGTCCCTTCCCTCTTGTTGTAGTTCTCTGATTCGGCACAAATGATAGTCGCCCTCCAGCACTTGATGATTTCTTTTCAAGAAGTCTTAAGAATGTGCATTCAATTCTATGTTTCTCCCCTTCTCAGAGATATATTACATACAGGCTAATGATAAAAGAATAGAACAATCAGAAAGGAAAGAATGATTGAACAGAATTTGAGATTCCACCGTCTTAAACCTCGAAACCGAACTCAAATGGA-CAATGTGCCATCTTCAGACCTGGAATATA</genome_strand>
        <mrna_strand>GAAATATTTGCATAAACTTATATCCACACAATGCATTTGATAGGACCATAAAAGAGCAGAGAAATCTTCTCAATTCACATCATTAACCATATACTGTACAGCAAGAAGACTACCAAAACCACTGACTCAATCCAACATAGTTGATGCTTATTGCTAGTCACAGCCATGCCCACTGACACAATGCTAATCTAAACTAGGTCCACATGCGACCAACTTTAAAAAAGAGAACTTCAATATACTACCAATTCAAGTATCAAGCAGCCACAAAGCAGTCTTCAGTTAAAGCTTTGCCACCACAATTGGTGT----AAA-C-AAC--C-TGAACTTCATTTAGTTCCAGCATAATTCA-GAATGATCAAATCTTTCGTCTGTACTAATAAATTCTCTACCTCATTTGGTCTTACAGAAACCATGTCTAACATCTTTGGCTCGTCCCACCCCTCTTG-TG--GTTCTCTGATTCTGCATAAATGATAGTCGCCCTCCAGCACTTGATGGTTTCTTTTCAAGCAGTCTTAGGAATGCGCATTCAATTCTATGTTTCTCCCCTTCTCAGAGATATATTACATCCAGGCTAATGATAAAAGAATAGAACAATCAGAAAGGAAAGAATGATTGAACAGAATTTGAGACTCCACTTTCTTAAACCTCGAAACCGAACTCAAATGGACCAATGTGCCATCTTCAGAACTGGAATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E323833" ref_strand="+" ref_description="SGN-E323833 [cTOC-5-F23]">
      <seq>gaaaaagtctttacatctttagcggagaaaggaaaactggcggattttgtgctttgcattggtgatgatagatcagatgaagatatgtttgaaatcattggcgatgctttgtccagaaatattatttcatatgatgccaaggtatttgcttgcacagttggacaaaaacctagcaaagcaaagtattacttggatgacacatctgaggtggtgcttatgctagactcccttgctgatgccactgatactccagtgacttctgatgacgatgaacctgcggactccgactgaatgtagctaccagatgttttgtttgcttcggttaccttctctattgaatgtatattccaggtctgaagatggcacattgtccatttgagttcggtttcgaggtttaagacggtggaatctcaaattctgttcaatcattctttcctttctgattgttctattcttttatcattagcctgtatgtaatatatctctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="99987" stop="98900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99687" g_stop="99200" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E323833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99687" e_stop="99200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTGA</genome_strand>
        <mrna_strand>GAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E243501" ref_strand="+" ref_description="SGN-E243501 [cLED-34-D4]">
      <seq>gaaaagcggtcagcacattgtggaagtaaagcctcagggggtcaccaaaggtttagttgcagaaaaagtctttacatctttagcggagaaaggaaaactggcggattttgtgctttgcattggtgatgatagatcagatgaagatatgtttgaaatcattggcgatgctttgtccagaaatattatttcatatgatgccaaggtatttgcttgcacagttggacaaaaacctagcaaagcaaagtattacttggatgacacatctgaggtggtgcttatgctagactcccttgctgatgccactgatactccagtgacttctgatgacgatgaacctgcggactccgactgaatgtagctaccagatgttttgtttgcttcggttaccttctctattgaatgtatattccaggtctgaagatggcacattgtccatttgagttcggtttcgaggtttaagacggtggaatctcaaattctgttcaatcattctttcctttctgattgttctattcttttatcattagcctgtatgtaatatatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100015" stop="98901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99711" g_stop="99201" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="548" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E243501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99711" e_stop="99201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTCACCAAAGGTTTAGTTGCAGAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTG</genome_strand>
        <mrna_strand>GGGGTCACCAAAGGTTTAGTTGCAGAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E218307" ref_strand="-" ref_description="SGN-E218307 [cLEL-23-L11]">
      <seq>gacattgatgttgctgtaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttccctgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104248" stop="13270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103948" g_stop="103558" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103557" i_stop="103322" i_length="236">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.592" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103321" g_stop="103308" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="404" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E218307" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218307" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103948" e_stop="103558"/>
          <exon e_start="103321" e_stop="103308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAGTTGTTTCCCTTGCTTTGAGCATTACTCAGTGCTCAAACTCCTTGTCACGACCCAATTCATCGAATGATTTAGTTTAAACATCAGGTACAAAACACGTGCTTGTTAACGAGTGGAAATAATATCTAGCCATAGAAGTTCAAACAATGATCTTTGCTTAAATAACGATCGAATTTAGTGTTTATTTTTCTTAGTCGATATACAAAATTATACTATGCGGGATGTCGCCAGAGAGAGAAATCAAT</genome_strand>
        <mrna_strand>GACATTGATGTTGCTGT-AAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCCCTGTAAA............................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E217807" ref_strand="-" ref_description="SGN-E217807 [cLEL-23-L11]">
      <seq>agctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcnctgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104226" stop="13270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103926" g_stop="103558" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103557" i_stop="103322" i_length="236">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.592" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103321" g_stop="103308" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="383" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E217807" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217807" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103926" e_stop="103558"/>
          <exon e_start="103321" e_stop="103308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAGTTGTTTCCCTTGCTTTGAGCATTACTCAGTGCTCAAACTCCTTGTCACGACCCAATTCATCGAATGATTTAGTTTAAACATCAGGTACAAAACACGTGCTTGTTAACGAGTGGAAATAATATCTAGCCATAGAAGTTCAAACAATGATCTTTGCTTAAATAACGATCGAATTTAGTGTTTATTTTTCTTAGTCGATATACAAAATTATACTATGCGGGATGTCGCCAGAGAGAGAAATCAAT</genome_strand>
        <mrna_strand>AGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCNCTGTAAA............................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E734413" ref_strand="+" ref_description="SGN-E734413 [LB12CD10]">
      <seq>ctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104329" stop="13269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104029" g_stop="103560" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103559" i_stop="103322" i_length="238">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.592" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103321" g_stop="103309" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="483" r_length="13" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E734413" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104029" e_stop="103560"/>
          <exon e_start="103321" e_stop="103309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAGTTGTTTCCCTTGCTTTGAGCATTACTCAGTGCTCAAACTCCTTGTCACGACCCAATTCATCGAATGATTTAGTTTAAACATCAGGTACAAAACACGTGCTTGTTAACGAGTGGAAATAATATCTAGCCATAGAAGTTCAAACAATGATCTTTGCTTAAATAACGATCGAATTTAGTGTTTATTTTTCTTAGTCGATATACAAAATTATACTATGCGGGATGTCGCCAGAGAGAGAAATCAA</genome_strand>
        <mrna_strand>CTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCAAAAAA..............................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E293388" ref_strand="+" ref_description="SGN-E293388 [cLET-18-J23]">
      <seq>caaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagctggaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacctttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104374" stop="103259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104071" g_stop="103549" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="531" r_length="523" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E293388" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104071" e_stop="103549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAGT</genome_strand>
        <mrna_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTGGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACCTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E393450" ref_strand="+" ref_description="SGN-E393450 [TUS-38-A4]">
      <seq>tttttttttttacagtgaagaaaagactagttctatatcaaatgtgaaaatttgcttcatacacaaatgcacaaaagtgttttttaactttcttatagtctatatattgtttatactctagatcaaattagggggataagtgtatgtgaattgtacaagttgcagtatatgttcaagctattatacagctgctggggtaggaacagcagcagggacgcggttttcagcaggaatttcaacaaattctgagagaatagcacggaattcatctccagtcatcgtctccttttcaaggaggacttccacaatcttatcaattgcttcacggttgctgcggatttggctcaatgcaatctcatatgcactgtctgaaagcttcttcacagcaacatcaatgtcttcagctagcttttctgacatcgagttcctggccatcattctcatgattacatcaccactttgggctgaagaatccatgagggaccacgggccaagttcagacataccaaaagtgacaaccatctgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="103259" stop="104374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103550" g_stop="104080" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E393450" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103550" e_stop="104080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTAGCATTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGCATGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E396240" ref_strand="+" ref_description="SGN-E396240 [TUS-41-M1]">
      <seq>tttttttttttacagtgaagaaaagactagttctatatcaaatgtgaaaatttgcttcatacacaaatgcacaaaagtgttttttaactttcttatagtctatatattgtttatactctagatcaaattagggggataagtgtatgtgaattgtacaagttgcagtatatgttcaagctattatacagctgctggggtaggaacagcagcagggacgcggttttcagcaggaatttcaacaaattctgagagaatagcacggaattcatctccagtcatcgtctccttttcaaggaggacttccacaatcttatcaattgcttcacggttgctgcggatttggctcaatgcaatctcatatgcactgtctgaaagcttcttcacagcaacatcaatgtcttcagctagcttttctgacatcgagttcctggccatcattctcatgattacatcaccactttgggctgaagaatccatgagggaccacgggccaagttcagacataccaaaagtgacaaccatctgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="103259" stop="104374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103550" g_stop="104080" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E396240" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103550" e_stop="104080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTAGCATTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGCATGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E374419" ref_strand="+" ref_description="SGN-E374419 [TUS-38-B4]">
      <seq>caaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104374" stop="103259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104071" g_stop="103550" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="530" r_length="522" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E374419" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104071" e_stop="103550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAG</genome_strand>
        <mrna_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E390186" ref_strand="+" ref_description="SGN-E390186 [TUS-41-M1]">
      <seq>gcaaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104374" stop="103259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104071" g_stop="103550" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="531" r_length="522" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E390186" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104071" e_stop="103550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAG</genome_strand>
        <mrna_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E393233" ref_strand="+" ref_description="SGN-E393233 [TUS-38-A4]">
      <seq>gcaaaacagatggttgtcacttttggtatgtctgaacttggcccgtggtccctcatggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104374" stop="103259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104071" g_stop="103550" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="531" r_length="522" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E393233" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104071" e_stop="103550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAG</genome_strand>
        <mrna_strand>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E374418" ref_strand="+" ref_description="SGN-E374418 [TUS-38-B4]">
      <seq>ttttttttttacagtgaataaaagactagttctatatcaaatgtgaaaatttgcttcatacacaaatgcacaaaagtgttttttaactttcttatagtctatatattgtttatactctagatcaaattagggggataagtgtatgtgaattgtacaagttgcagtatatgttcaagctattatacagctgctggggtaggaacagcagcagggacgcggttttcagcaggaatttcaacaaattctgagagaatagcacggaattcatctccagtcatcgtctccttttcaaggaggacttccacaatcttatcaattgcttcacggttgctgcggatttggctcaatgcaatctcatatgcactgtctgaaagcttcttcacagcaacatcaatgtcttcagctagcttttctgacatcgagttcctggccatcattctcatgattacatcaccactttgggctgaagaatccatgagggaccacgggccaagttcagacataccaaaagtgacaaccatctgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="103259" stop="104374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103551" g_stop="104080" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E374418" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103551" e_stop="104080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAGCATTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGCATGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTACAGTGAATAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E715915" ref_strand="+" ref_description="SGN-E715915 [FB15CE04]">
      <seq>cgagcgcatcattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagtcttttcttcactgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104246" stop="103259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103957" g_stop="103551" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E715915" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103957" e_stop="103551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGA</genome_strand>
        <mrna_strand>CGAGC-GCA-TCATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E614082" ref_strand="+" ref_description="SGN-E614082 [63864]">
      <seq>naggcttcaatnggtcagaaaagctagcttgaagaacattgggaattgtttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtccttcttgaaaaggagacaatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgtacctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcatatacacttatccacctaattgatctagagtataaacaatagactataagaaagttaaaacacttttgtgcatttgtgttggaagcaatttttcacatttgaaatagaactagtcttttcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104267" stop="103265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103938" g_stop="103555" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="426" r_length="377" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E614082" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103938" e_stop="103555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCT</genome_strand>
        <mrna_strand>TTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTTCTTGAAAAGGAGACAATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTACCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCATATACACTTATCCACCTAA-TTGATCTAGAGTATAAAC---A-ATAGACTATAAGAAAGTT--AAAACACTTTTGTGCATTTGTGTTGGAAGCAATTTTTCACATTTGAAATAGAACTAGTCTTTTCTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E616436" ref_strand="+" ref_description="SGN-E616436 [66245]">
      <seq>gagacaatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgtacctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcatatacacttatccacctaattgatctagagtataaacaatagactataagaaagttaaaacacttttgtgcatttgtgttggaagcaatttttcacatttgaaatagaactagtcttttcttcattgtaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104134" stop="103259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103834" g_stop="103556" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E616436" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103834" e_stop="103556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGC</genome_strand>
        <mrna_strand>GAGACAATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTACCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCATATACACTTATCCACCTAA-TTGATCTAGAGTATAAAC---A-ATAGACTATAAGAAAGTT--AAAACACTTTTGTGCATTTGTGTTGGAAGCAATTTTTCACATTTGAAATAGAACTAGTCTTTTCTTCATTGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E261252" ref_strand="+" ref_description="SGN-E261252 [cLEG-68-K3]">
      <seq>gatgactggagatgaattccgtgctattctctcacaatctgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccaccaactgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgatatagaactagacttttcttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104129" stop="103263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103829" g_stop="103563" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E261252" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103829" e_stop="103563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACT</genome_strand>
        <mrna_strand>GATGACTGGAGATGAATTCCGTGCTATTCTCTCACAATCTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCACCAACTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGACTTTTCTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E607650" ref_strand="+" ref_description="SGN-E607650 [23620]">
      <seq>caggaacttcaatgtcagaaaagcttagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgaggattgcattgaggccaaaatccgcagcaaccgtgaagcaattgataagattgtggaagtccttcttgaaaaggagacaatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgtacctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcatatacacttatccacctaattgatctagagtataaacaatagactataagaaagttaaaacacttttgtgcatttgtgttggaagcaattttttcacatttgaaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104279" stop="103280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103979" g_stop="103575" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E607650" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103979" e_stop="103575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAC-TCGATGTCAGAAAAGC-TAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGA-GATTGCATTGA-GCCAA-ATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAA-ATTTTCACATTTGATATAGAACTAGT</genome_strand>
        <mrna_strand>CAGGAACTTCAATGTCAGAAAAGCTTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGGATTGCATTGAGGCCAAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTTCTTGAAAAGGAGACAATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTACCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCATATACACTTATCCACCTAA-TTGATCTAGAGTATAAAC---A-ATAGACTATAAGAAAGTT--AAAACACTTTTGTGCATTTGTGTTGGAAGCAATTTTTTCACATTTGAAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E302032" ref_strand="+" ref_description="SGN-E302032 [cLEX-3-O6]">
      <seq>ggattcttcagcccaaagtggtgatgtaatcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatgcgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttgctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104324" stop="103280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104024" g_stop="103576" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E302032" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104024" e_stop="103576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAG</genome_strand>
        <mrna_strand>GGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATGCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTGCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E734039" ref_strand="+" ref_description="SGN-E734039 [LB11CE03]">
      <seq>actcgatgtcagaaaagctagctgaagacattgatgttgctgtgaagaagctttcagacagtgcatatgagattgcattgagccaaatccgcagcaaccgtgaagcaattgataagattgtggaagtcctccttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgttcctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcacatacacttatccccctaatttgatctagagtataaacaatatatagactataagaaagttaaaaaacacttttgtgcatttgtgtatgaagcaaattttcacatttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104274" stop="103280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103974" g_stop="103577" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E734039" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103974" e_stop="103577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTA</genome_strand>
        <mrna_strand>ACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E605196" ref_strand="+" ref_description="SGN-E605196 [21110]">
      <seq>aactagtgatccccgggctgaggaatcggcacgaggccaatccgcagcaacgtgaagcaattgataagattgtggaagtccttcttgaaaaggagacgatgactggagatgaattccgtgctattctctcagaatttgttgaaattcctgctgaaaaccgcgtccctgctgctgtacctaccccagcagctgtataatagcttgaacatatactgcaacttgtacaattcatatacacttatccacctaattgatctagagtataaacaatagactataagaaagttaaaacacttttgtgcatttgtgttggaagcaatttcacatttgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104195" stop="103281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103892" g_stop="103581" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="337" r_length="301" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E605196" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103892" e_stop="103581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGA</genome_strand>
        <mrna_strand>CC-AATCCGCAGCAA-CGTGAAGCAATTGATAAGATTGTGGAAGTCCTTCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTACCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCATATACACTTATCCACCTAA-TTGATCTAGAGTATAAAC---A-ATAGACTATAAGAAAGTT--AAAACACTTTTGTGCATTTGTGTTGGAAGC-AA-TTTCACATTTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E279565" ref_strand="+" ref_description="SGN-E279565 [cLER-5-B20]">
      <seq>tcgcatgcaaagagattgatgattcttcagcccaaagtggtgatgttgtcatgagaatgatggccaggaactcgatgtcagaaaagctagctgaagacattgatgttgctgtgaacaagctttcaaacagtgcatatgagattgcattgagccaaattcgcatcaaccgtgaagcaattgataagattgtggaagtcctgcttgaaaaggagacgatgactggagatgaattccgagctattctctcataatttgctggaattgctgctgaaaaccgcgtccctgctgctgttcctaccccaccagctgtataatagctcgaacatatactgcaactggaacaagtcacatacactcatgcccctaatccgagctacagtataaacaatgtatagactataagaaggttaaaaaacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="104328" stop="103324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104013" g_stop="103624" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="420" r_length="390" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-E279565" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104013" e_stop="103624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTT</genome_strand>
        <mrna_strand>CCCAAAGTGGTGATGTTGTCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAACAAGCTTTCAAACAGTGCATATGAGATTGCATTGAGCCAAATTCGCATCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTGCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGAGCTATTCTCTCATAATTTGCTGGAATTGCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCACCAGCTGTATAATAGCTCGAACATATACTGCAACTGGAACAAGTCACATACACTCATGCCCCTAATCCGAGCTACAGTATAAACAATGTATAGACTATAAGAAGGTTAAAAAACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E722586" ref_strand="+" ref_description="SGN-E722586 [FC17CH03]">
      <seq>aatcggccgaattgaaacgcaatccttgcccgtcttcttccttctataacagtctctctctctctgttctttccgctttaccgttctctctgcttttgctaaaaggtggcattgataatagaatgtaaaactggatcagttaagcactacatggatgtgtgatcattggtttgatttgcattgtagatccagcttgtggcaaactgtgttctggaagggtctgctgcttgtgaaaggctgttcttgaagggtcttcgagcaatagaggacccttcaggctggattcttggtttattcgaagcggttagtcacagtaagataagctttgttgtataagcggtgggtaaagcggttgtcggtttgctgaacatgccagctgtacagaagctttataacgcttgtaaagcatcactttcacccaacggaccggtttcagaagacgctctcgagaaagttcggtccctattggataaaatcaagccttctgatgtgggtcttgagcaagaagcacaacttgtacggagttggaatattactctgcacgagcgcaatggggaactacagccaccgccaccaatcaaatacctgcacttacatgaatgtgacagcttctctatggggatattttgcatgccgccttcctctatcatacctctacacaatcaccctgggatgacagtcttaagtaagctggtatatggttcctttcacgtgaaagcctatgattggatcaatattccaggtcctttggttccattggaaggtgcaagaccggcaaagctcgttaaagactgtgacatgactgctccgtgtgggacaactgctctgtatcctacttctggaggcaacatccattgtttcaaagctataactccttgtgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="106111" stop="111495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106411" g_stop="106501" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="105" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106502" i_stop="107061" i_length="560">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107062" g_stop="107425" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="469" r_length="364" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107426" i_stop="109941" i_length="2516">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109942" g_stop="110087" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="615" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110088" i_stop="110275" i_length="188">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110423" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="763" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110424" i_stop="111132" i_length="709">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.478" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111133" g_stop="111253" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="884" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E722586" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106411" e_stop="106501"/>
          <exon e_start="107062" e_stop="107425"/>
          <exon e_start="109942" e_stop="110087"/>
          <exon e_start="110276" e_stop="110423"/>
          <exon e_start="111133" e_stop="111253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCAATCCTTGTTCGTCTTCTTCCTTCTATAACAGTCTCTCTCTCTCTGTTCTTTCCGCTTTACCGTTCTCTCTGCTTTTGCTAAAAGGTATAATCATCTCATTCTCTGCTTATTTTCACTCACAATCCCTACTGTTAAACTGGAAAATACTCGTTTGTGTATATGTATATGCTTTTGTTGTATGTGTGTTCATGACCAATTTTGTGTGTTTTTAACTCTATTTGGTGCGATTCTCATTTGGATTGTTGATCGTCAAGTTGTGTAAATTTTTTCCAATTGAATTACGCATCTACTGAAACTCATCGATTTCTCTTGGAATATATAGTTGTACATTCTATCCCTTTCAGGTTTGCTTCTGTTTCGGTGAGTTTTCAATTTTTTTGATAAATTGCATATCTAGATTTGTTGCCGGTGAAGAGTACAGTAGCTCGCATCTAAGTTCGGTTTTAGTTGGACATGATTTTAATTGGAAATAGATGTTTTTACGTTGTAATCATTCAGCTTGGAGTTAGGGATCTAGAGGTGGAATTTGGAAATGAAAATGTAATTTTGGACGGTATTTTTTCCCCAAATTTTTTGAGTACTATTTCTGATTTTTTTGTGGATCAGAAATGTTGAGTTTAATGGTGATTTCTTCTGTTTGTTAGGTGGCATTGATAATAGAATGTAAAACTGGATCAGTTAAGCACTACATGGATGTGTGATCATTGGTTTGATTTGCATTGTAGATCCAGCTTGTGGCAAACTGTGTTCTGGAAGGGTCTGCTGCTTGTGAAAGGCTGTTCTTGAAGGGTCTTCGAGCAATAGAGGACCCTTCAGGCTGGATTCTTGGTTTATTCGAAGCGGTTAGTCACAGTAAGATAAGTTTTGTTGTATAAGCGGTGGGTAAAGCGGTTGTCGGTTTGCTGAACATGCCAGCTGTACAGAAGCTTTATAACGCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGGGTATGTATTTTTGTTTATTAATACTTAGCAAACATTTTCATATTTACTTCTAGATTTCTAATCACATCATGGTTTAAATGGTTATTTAATTTGTCTTCTATAATATCTACTCAAGTTACTTATAGATGTAACAAAAAATAGTTTTCTGGAAGATCATGTGGTAAAATTTTATCTGTCTTCCTATGTTCAATGAGAATCTCCTAAACCTTTTGGAGTGACTATCATTTTCTTGAATTTAACTTAGGTTTGATAGATGCAACAGTTTTATGATAACAAGGCATTAGAAATATTTGATTGTAAAAGTAGGCATGATATTTTTTCTCTGAATTGTTGGCTTGTCAATTTTTTTTGACTTTGTAACTATGAAAAGTCTAGAGAGAAAATTTGAAGAAAGGATCAAGCTAGTTAATAATTTGCTGCTTCAAGGACCCAAAAATTACTTAATTGTTAAATTTTGATGAACATTAGAGTCATATGTTGTATGATGAATATTCAAACTAATAAAGTACACCATTTCCATGAAAAAAAGTGATTCCCTCCTTTTGTTCCTCCATTTCATAATAATGTATAGATATTGTTTACACTTATAAGCACTAGATCCAAAAAAGTATTTTTTACCGAACTAAGGACTATCATTAGGAATAAAAAGTTGTGTCTTTATGTGAATGATCATGTACAATTCTGTAGATCTTTTGACAGGGATTATATGAAATTCTCGAGTGGCATTTTGTAGTTTGAAATCAGGAATATATGTACTTGCATGCAAACTCTTTATACCTAGTTTCTCATTTCTTGAGGAGACCAAAGGGCTGCAGCTTCTTGTTGAATTATAAATGTGTAGTAAAATAATGTTGATGATTTTATGAACAATCATGAATGATAAATTGTAACAATCATATCATGTTCATCCTTAAAATTTGCAGACAGGTCTTTAATATACTCCATATATATTGAAAAGAATTTGAGAGGAGATATCTCTAGTATTTATGGAATTGTGAAATAAATGAAAGAGAGTAATAGAAAACTTAAAACCATCAAGAGACACATCGATCACCAGTCAAACCCATGCTTGAATTTTATGCCAGAGGCTGGTATTCTCACTGAAATCCCATTTTGTTTACCAAATGAAGAAGATATGATCTTTCAACTCAATATAATGGTACCAAATTGAGCTTTTTGAAGACTTCATAAACGTAAGCTTAAAATCTAATAAATAAACAATTATAGGGGAAGGGGGGAAAGTTGAAAGCCTTAGAATTAAGAACGCATATTATAACTTTGCCTTTTAGTCATTCAATTTTTAAGTTATAACTTTGTCGCTTTCCACTTTTAGAATATTATAGATATAGATAGATGTGTGATGGTGAAGGTTTAGCAACTTTGATGGATCTTTGTGTGAAGTAACCACATTCTATCTTTCTCCTCTGCCATTGGTGGATTGAGACTAATGGAGAATATTATCTATAAAATGTAAAGAAGCTTGAAGAATGAATGTCTAACCATTGAATCACACTGTTTGATTTCTTTGGTAAGTTATGAATAAGATTGCTTATAGCTTATCTACAAGGTCAAGTGGATAACATTTATCTAAACACTCTTTGAGGATGATATCCTCTTTTTGTAATGGTCCAATTGAATAATATATGCGGGATGTCGCCAGAGAGAGAAATCAATGCATATCATATTAGTGAGTAGATCTTAAAAGCATCACTGGATTACTTCATATCAGCTTCCAAAAGATGTGAAATTTTATGCGATAAATTCATTTTTCATGCATTTATCACATTTTGCAAAATACTATAATATTTAAAGCTGGCAGCAATTCCATGGAGAAGCTATTTGGAGATTGGATGATTTTAATATTTTTCTTGATAGTTCTTTTGCGGTGGTGGTAGTTGGGGACAGATTTAGATTGGTTTTACCGTGGAGGTAAAAAATTGAGATTTGTATTATCTAATCACTAATAGGAATTGAGAATTTGTCTGACATTAAATTACAGTAGTGAAGTGGGGAAAGCTTCAAGGGATTAACAATGTTAAATTTTTTGGAAAAAACTGAGGTTGAGACTTCTGCACATGGGATGTAAATTAAACCCATATCCAGTCTCAATCTCAGATAGACAACTGAAGCAGTCAATATGGTTTTGCAAGCAATCTTTATTTAGCGTTTGGCTTGTTCAGTATTTGATCATGGAGGGTGGGTTGGACAGTAATTAGGCTCAGTTTGACGTGTAACTTTTCTCATGGATAGCACCGTATTACTTATAATCATATTTTTGTGTTTCTCCTCCTTTTTTTTAAAAAAAAATAAATAAATATTGCATAGAACTGCAAAATTCATGATTTAAAATGATTTTGAATTTCTCCCTCAAGTCTCTAAACTCTCATTTACAGCAATTTTATTTGGGCCATGAGTTAAACTATCAATTTTGTGATCATTGGCCTTCCATGAAATTTCAGGCTCATTTTGGCCTATGCTTTTATAAATGACTTATATTACTGACATTTGGGCTGCAGATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCTGTAAGTGTGTCATTGTGCTTTCACCCTTTTTCTTTTTCCTTTTTTTTTCTGAAGGAGGTTTAGGGTGGGGGTTGTAGAGAGTGCTGATATTTGGAGAATATGGATGATTAATATCAATTTGTAGGGGTTCCAGTTGTAGAGAAATGATGCATGATTGAATCTTTTATCTTGTTTGGTGTTATTCGCAGATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAGGTGCGTAGTCTTTAATTGGATGTCTAGAATGTACTTGGTGGATATGCAATCATTCCGTTGCAGAACATAGAGTTTTCGGACTAGATGTTTTTGATGTGCTTGTTTTCTGCTATATTATTTCTAATTGGGTGGCAAGCCCTTTCTCATCTCTGGTTCTGTTGGCATGGTTTTCCGGCCTTTTCTTTTTATCATATTTGTTTTGTAGTTTGTTTCATGATATGCCTATTTTGGCCTTACAAACTCCTCTTTTCGAATTCAACCATAAAACTTACTGACTGAGAGCTAGGTATAAAGATTACAACTAAGTTTGAGGGTTTAATTGCATCATCTGCATAATTTGTGCTTGCTTGTACTAATAACCACTTTGTTGAGTTCTGTAAACTTGCAAAGTCGAGGGATCAGTTCCCATCTTGTGCAGAATTTTGTATCCCATGCACATAATTATATTACTTGTAAATAGTTGATTGCAACTGCGTGACCAAAGATTCTGAATAGAGAAATGCTAGTTTTTACGAGTTTATTTTCTCTTTCTTTATTGGTTCTAGTTTATCTAAGGTATTATTTTTTGGGATTAATGTTCATCATACAGGATTCTACTGCTACTTCTTCTCGACCTCTTGAATTCATATACAGTTACATATATACATACAATATACACACATCGCAGTTTGCTATCTTCAGCTGCTCGCTCCTAATGTTGCTTGCTCAGGTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTAT</genome_strand>
        <mrna_strand>AAACGCAATCCTTGCCCGTCTTCTTCCTTCTATAACAGTCTCTCTCTCTCTGTTCTTTCCGCTTTACCGTTCTCTCTGCTTTTGCTAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTGATAATAGAATGTAAAACTGGATCAGTTAAGCACTACATGGATGTGTGATCATTGGTTTGATTTGCATTGTAGATCCAGCTTGTGGCAAACTGTGTTCTGGAAGGGTCTGCTGCTTGTGAAAGGCTGTTCTTGAAGGGTCTTCGAGCAATAGAGGACCCTTCAGGCTGGATTCTTGGTTTATTCGAAGCGGTTAGTCACAGTAAGATAAGCTTTGTTGTATAAGCGGTGGGTAAAGCGGTTGTCGGTTTGCTGAACATGCCAGCTGTACAGAAGCTTTATAACGCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATATTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCT............................................................................................................................................................................................ATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E335192" ref_strand="+" ref_description="SGN-E335192 [cTOE-1-J12]">
      <seq>tgttctttccgctttaccgttctctctgcttttgctaaaaggtggcattgacaactagaacgtaaaactggaccagttaagccactacactggatgtgtgactcacttggtttgatttgcattgtagatccagcttgtggcaaactgtgttctggaagggtctgctgcttgtgaaaggctgttcttgaagggtcttcgagcaatagaggacccttcaggctggattcttggtttattcgaagcggttagtcacagtaagataagttttgttgtataagcggtgggtaaagcggttgtcggtttgctgaacatgccagctgtacagaagctttataacgcttgtaaagcatcactttcacccaacggaccggtttcagaagacgctctcgagaaagttcggtccctattggataaaatcaagccttctgatgtgggtcttgagcaagaagcacaacttgtacggagttggaatagtactctgcacgagcgcaatggggaactacagccaccgccaccaatcaaatacctgcacttacatgaatgtgacagcttctctatggggatattttgcatgccgccttcctctatcatacctctacacaatcaccctgngatgacagtcttaagtaagctggtatatggttcctttcacgtgaaagcctatgatttggatcaatattccaggtccttttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="106161" stop="110712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106461" g_stop="106501" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106502" i_stop="107061" i_length="560">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107062" g_stop="107425" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="410" r_length="369" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107426" i_stop="109941" i_length="2516">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109942" g_stop="110087" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="556" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110088" i_stop="110275" i_length="188">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110413" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="695" r_length="139" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E335192" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106461" e_stop="106501"/>
          <exon e_start="107062" e_stop="107425"/>
          <exon e_start="109942" e_stop="110087"/>
          <exon e_start="110276" e_stop="110413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTTTCCGCTTTACCGTTCTCTCTGCTTTTGCTAAAAGGTATAATCATCTCATTCTCTGCTTATTTTCACTCACAATCCCTACTGTTAAACTGGAAAATACTCGTTTGTGTATATGTATATGCTTTTGTTGTATGTGTGTTCATGACCAATTTTGTGTGTTTTTAACTCTATTTGGTGCGATTCTCATTTGGATTGTTGATCGTCAAGTTGTGTAAATTTTTTCCAATTGAATTACGCATCTACTGAAACTCATCGATTTCTCTTGGAATATATAGTTGTACATTCTATCCCTTTCAGGTTTGCTTCTGTTTCGGTGAGTTTTCAATTTTTTTGATAAATTGCATATCTAGATTTGTTGCCGGTGAAGAGTACAGTAGCTCGCATCTAAGTTCGGTTTTAGTTGGACATGATTTTAATTGGAAATAGATGTTTTTACGTTGTAATCATTCAGCTTGGAGTTAGGGATCTAGAGGTGGAATTTGGAAATGAAAATGTAATTTTGGACGGTATTTTTTCCCCAAATTTTTTGAGTACTATTTCTGATTTTTTTGTGGATCAGAAATGTTGAGTTTAATGGTGATTTCTTCTGTTTGTTAGGTGGCATTGATAA-TAGAATGTAAAACTGGATCAGTTAAG-CACTACA-TGGATGTGTGA-TCA-TTGGTTTGATTTGCATTGTAGATCCAGCTTGTGGCAAACTGTGTTCTGGAAGGGTCTGCTGCTTGTGAAAGGCTGTTCTTGAAGGGTCTTCGAGCAATAGAGGACCCTTCAGGCTGGATTCTTGGTTTATTCGAAGCGGTTAGTCACAGTAAGATAAGTTTTGTTGTATAAGCGGTGGGTAAAGCGGTTGTCGGTTTGCTGAACATGCCAGCTGTACAGAAGCTTTATAACGCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGGGTATGTATTTTTGTTTATTAATACTTAGCAAACATTTTCATATTTACTTCTAGATTTCTAATCACATCATGGTTTAAATGGTTATTTAATTTGTCTTCTATAATATCTACTCAAGTTACTTATAGATGTAACAAAAAATAGTTTTCTGGAAGATCATGTGGTAAAATTTTATCTGTCTTCCTATGTTCAATGAGAATCTCCTAAACCTTTTGGAGTGACTATCATTTTCTTGAATTTAACTTAGGTTTGATAGATGCAACAGTTTTATGATAACAAGGCATTAGAAATATTTGATTGTAAAAGTAGGCATGATATTTTTTCTCTGAATTGTTGGCTTGTCAATTTTTTTTGACTTTGTAACTATGAAAAGTCTAGAGAGAAAATTTGAAGAAAGGATCAAGCTAGTTAATAATTTGCTGCTTCAAGGACCCAAAAATTACTTAATTGTTAAATTTTGATGAACATTAGAGTCATATGTTGTATGATGAATATTCAAACTAATAAAGTACACCATTTCCATGAAAAAAAGTGATTCCCTCCTTTTGTTCCTCCATTTCATAATAATGTATAGATATTGTTTACACTTATAAGCACTAGATCCAAAAAAGTATTTTTTACCGAACTAAGGACTATCATTAGGAATAAAAAGTTGTGTCTTTATGTGAATGATCATGTACAATTCTGTAGATCTTTTGACAGGGATTATATGAAATTCTCGAGTGGCATTTTGTAGTTTGAAATCAGGAATATATGTACTTGCATGCAAACTCTTTATACCTAGTTTCTCATTTCTTGAGGAGACCAAAGGGCTGCAGCTTCTTGTTGAATTATAAATGTGTAGTAAAATAATGTTGATGATTTTATGAACAATCATGAATGATAAATTGTAACAATCATATCATGTTCATCCTTAAAATTTGCAGACAGGTCTTTAATATACTCCATATATATTGAAAAGAATTTGAGAGGAGATATCTCTAGTATTTATGGAATTGTGAAATAAATGAAAGAGAGTAATAGAAAACTTAAAACCATCAAGAGACACATCGATCACCAGTCAAACCCATGCTTGAATTTTATGCCAGAGGCTGGTATTCTCACTGAAATCCCATTTTGTTTACCAAATGAAGAAGATATGATCTTTCAACTCAATATAATGGTACCAAATTGAGCTTTTTGAAGACTTCATAAACGTAAGCTTAAAATCTAATAAATAAACAATTATAGGGGAAGGGGGGAAAGTTGAAAGCCTTAGAATTAAGAACGCATATTATAACTTTGCCTTTTAGTCATTCAATTTTTAAGTTATAACTTTGTCGCTTTCCACTTTTAGAATATTATAGATATAGATAGATGTGTGATGGTGAAGGTTTAGCAACTTTGATGGATCTTTGTGTGAAGTAACCACATTCTATCTTTCTCCTCTGCCATTGGTGGATTGAGACTAATGGAGAATATTATCTATAAAATGTAAAGAAGCTTGAAGAATGAATGTCTAACCATTGAATCACACTGTTTGATTTCTTTGGTAAGTTATGAATAAGATTGCTTATAGCTTATCTACAAGGTCAAGTGGATAACATTTATCTAAACACTCTTTGAGGATGATATCCTCTTTTTGTAATGGTCCAATTGAATAATATATGCGGGATGTCGCCAGAGAGAGAAATCAATGCATATCATATTAGTGAGTAGATCTTAAAAGCATCACTGGATTACTTCATATCAGCTTCCAAAAGATGTGAAATTTTATGCGATAAATTCATTTTTCATGCATTTATCACATTTTGCAAAATACTATAATATTTAAAGCTGGCAGCAATTCCATGGAGAAGCTATTTGGAGATTGGATGATTTTAATATTTTTCTTGATAGTTCTTTTGCGGTGGTGGTAGTTGGGGACAGATTTAGATTGGTTTTACCGTGGAGGTAAAAAATTGAGATTTGTATTATCTAATCACTAATAGGAATTGAGAATTTGTCTGACATTAAATTACAGTAGTGAAGTGGGGAAAGCTTCAAGGGATTAACAATGTTAAATTTTTTGGAAAAAACTGAGGTTGAGACTTCTGCACATGGGATGTAAATTAAACCCATATCCAGTCTCAATCTCAGATAGACAACTGAAGCAGTCAATATGGTTTTGCAAGCAATCTTTATTTAGCGTTTGGCTTGTTCAGTATTTGATCATGGAGGGTGGGTTGGACAGTAATTAGGCTCAGTTTGACGTGTAACTTTTCTCATGGATAGCACCGTATTACTTATAATCATATTTTTGTGTTTCTCCTCCTTTTTTTTAAAAAAAAATAAATAAATATTGCATAGAACTGCAAAATTCATGATTTAAAATGATTTTGAATTTCTCCCTCAAGTCTCTAAACTCTCATTTACAGCAATTTTATTTGGGCCATGAGTTAAACTATCAATTTTGTGATCATTGGCCTTCCATGAAATTTCAGGCTCATTTTGGCCTATGCTTTTATAAATGACTTATATTACTGACATTTGGGCTGCAGATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCTGTAAGTGTGTCATTGTGCTTTCACCCTTTTTCTTTTTCCTTTTTTTTTCTGAAGGAGGTTTAGGGTGGGGGTTGTAGAGAGTGCTGATATTTGGAGAATATGGATGATTAATATCAATTTGTAGGGGTTCCAGTTGTAGAGAAATGATGCATGATTGAATCTTTTATCTTGTTTGGTGTTATTCGCAGATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGA-TTGGATCAATATTCCAGGTCCTTTGGTT</genome_strand>
        <mrna_strand>TGTTCTTTCCGCTTTACCGTTCTCTCTGCTTTTGCTAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTGACAACTAGAACGTAAAACTGGACCAGTTAAGCCACTACACTGGATGTGTGACTCACTTGGTTTGATTTGCATTGTAGATCCAGCTTGTGGCAAACTGTGTTCTGGAAGGGTCTGCTGCTTGTGAAAGGCTGTTCTTGAAGGGTCTTCGAGCAATAGAGGACCCTTCAGGCTGGATTCTTGGTTTATTCGAAGCGGTTAGTCACAGTAAGATAAGTTTTGTTGTATAAGCGGTGGGTAAAGCGGTTGTCGGTTTGCTGAACATGCCAGCTGTACAGAAGCTTTATAACGCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCT............................................................................................................................................................................................ATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGNGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTTGGATCAATATTCCAGGTCCTTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E337056" ref_strand="+" ref_description="SGN-E337056 [cTOE-7-G11]">
      <seq>tccgctttaccgttctctctgcttttgctaaaagatccagcttgtggcaaactgtgttctggaagggtctgctgcttgtgaaaggctgttcttgaagggtcttcgagcaatagaggacccttcaggctggattcttggtttattcgaagcggttagtcacagtaagataagttttgttgtataagcggtgggtaaagcggttgtcggtttgctgaacatgccagctgtacagaagctttataacgcttgtaaagcatcactttcacccaacggaccggtttcagaagacgctctcgagaaagttcggtccctattggataaaatcaagccttctgatgtgggtcttgagcaagaagcacaacttgtacggagttggaatagtactctgcacgagcgcaatggggaactacagccaccgccaccaatcaaatacctgcacttacatgaatgtgacagcttctctatggggatattttgcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="106168" stop="110397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106468" g_stop="106501" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106502" i_stop="107142" i_length="641">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107143" g_stop="107425" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="317" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107426" i_stop="109941" i_length="2516">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109942" g_stop="110087" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="463" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110088" i_stop="110275" i_length="188">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110294" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="482" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E337056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106468" e_stop="106501"/>
          <exon e_start="107143" e_stop="107425"/>
          <exon e_start="109942" e_stop="110087"/>
          <exon e_start="110276" e_stop="110294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCTTTACCGTTCTCTCTGCTTTTGCTAAAAGGTATAATCATCTCATTCTCTGCTTATTTTCACTCACAATCCCTACTGTTAAACTGGAAAATACTCGTTTGTGTATATGTATATGCTTTTGTTGTATGTGTGTTCATGACCAATTTTGTGTGTTTTTAACTCTATTTGGTGCGATTCTCATTTGGATTGTTGATCGTCAAGTTGTGTAAATTTTTTCCAATTGAATTACGCATCTACTGAAACTCATCGATTTCTCTTGGAATATATAGTTGTACATTCTATCCCTTTCAGGTTTGCTTCTGTTTCGGTGAGTTTTCAATTTTTTTGATAAATTGCATATCTAGATTTGTTGCCGGTGAAGAGTACAGTAGCTCGCATCTAAGTTCGGTTTTAGTTGGACATGATTTTAATTGGAAATAGATGTTTTTACGTTGTAATCATTCAGCTTGGAGTTAGGGATCTAGAGGTGGAATTTGGAAATGAAAATGTAATTTTGGACGGTATTTTTTCCCCAAATTTTTTGAGTACTATTTCTGATTTTTTTGTGGATCAGAAATGTTGAGTTTAATGGTGATTTCTTCTGTTTGTTAGGTGGCATTGATAATAGAATGTAAAACTGGATCAGTTAAGCACTACATGGATGTGTGATCATTGGTTTGATTTGCATTGTAGATCCAGCTTGTGGCAAACTGTGTTCTGGAAGGGTCTGCTGCTTGTGAAAGGCTGTTCTTGAAGGGTCTTCGAGCAATAGAGGACCCTTCAGGCTGGATTCTTGGTTTATTCGAAGCGGTTAGTCACAGTAAGATAAGTTTTGTTGTATAAGCGGTGGGTAAAGCGGTTGTCGGTTTGCTGAACATGCCAGCTGTACAGAAGCTTTATAACGCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGGGTATGTATTTTTGTTTATTAATACTTAGCAAACATTTTCATATTTACTTCTAGATTTCTAATCACATCATGGTTTAAATGGTTATTTAATTTGTCTTCTATAATATCTACTCAAGTTACTTATAGATGTAACAAAAAATAGTTTTCTGGAAGATCATGTGGTAAAATTTTATCTGTCTTCCTATGTTCAATGAGAATCTCCTAAACCTTTTGGAGTGACTATCATTTTCTTGAATTTAACTTAGGTTTGATAGATGCAACAGTTTTATGATAACAAGGCATTAGAAATATTTGATTGTAAAAGTAGGCATGATATTTTTTCTCTGAATTGTTGGCTTGTCAATTTTTTTTGACTTTGTAACTATGAAAAGTCTAGAGAGAAAATTTGAAGAAAGGATCAAGCTAGTTAATAATTTGCTGCTTCAAGGACCCAAAAATTACTTAATTGTTAAATTTTGATGAACATTAGAGTCATATGTTGTATGATGAATATTCAAACTAATAAAGTACACCATTTCCATGAAAAAAAGTGATTCCCTCCTTTTGTTCCTCCATTTCATAATAATGTATAGATATTGTTTACACTTATAAGCACTAGATCCAAAAAAGTATTTTTTACCGAACTAAGGACTATCATTAGGAATAAAAAGTTGTGTCTTTATGTGAATGATCATGTACAATTCTGTAGATCTTTTGACAGGGATTATATGAAATTCTCGAGTGGCATTTTGTAGTTTGAAATCAGGAATATATGTACTTGCATGCAAACTCTTTATACCTAGTTTCTCATTTCTTGAGGAGACCAAAGGGCTGCAGCTTCTTGTTGAATTATAAATGTGTAGTAAAATAATGTTGATGATTTTATGAACAATCATGAATGATAAATTGTAACAATCATATCATGTTCATCCTTAAAATTTGCAGACAGGTCTTTAATATACTCCATATATATTGAAAAGAATTTGAGAGGAGATATCTCTAGTATTTATGGAATTGTGAAATAAATGAAAGAGAGTAATAGAAAACTTAAAACCATCAAGAGACACATCGATCACCAGTCAAACCCATGCTTGAATTTTATGCCAGAGGCTGGTATTCTCACTGAAATCCCATTTTGTTTACCAAATGAAGAAGATATGATCTTTCAACTCAATATAATGGTACCAAATTGAGCTTTTTGAAGACTTCATAAACGTAAGCTTAAAATCTAATAAATAAACAATTATAGGGGAAGGGGGGAAAGTTGAAAGCCTTAGAATTAAGAACGCATATTATAACTTTGCCTTTTAGTCATTCAATTTTTAAGTTATAACTTTGTCGCTTTCCACTTTTAGAATATTATAGATATAGATAGATGTGTGATGGTGAAGGTTTAGCAACTTTGATGGATCTTTGTGTGAAGTAACCACATTCTATCTTTCTCCTCTGCCATTGGTGGATTGAGACTAATGGAGAATATTATCTATAAAATGTAAAGAAGCTTGAAGAATGAATGTCTAACCATTGAATCACACTGTTTGATTTCTTTGGTAAGTTATGAATAAGATTGCTTATAGCTTATCTACAAGGTCAAGTGGATAACATTTATCTAAACACTCTTTGAGGATGATATCCTCTTTTTGTAATGGTCCAATTGAATAATATATGCGGGATGTCGCCAGAGAGAGAAATCAATGCATATCATATTAGTGAGTAGATCTTAAAAGCATCACTGGATTACTTCATATCAGCTTCCAAAAGATGTGAAATTTTATGCGATAAATTCATTTTTCATGCATTTATCACATTTTGCAAAATACTATAATATTTAAAGCTGGCAGCAATTCCATGGAGAAGCTATTTGGAGATTGGATGATTTTAATATTTTTCTTGATAGTTCTTTTGCGGTGGTGGTAGTTGGGGACAGATTTAGATTGGTTTTACCGTGGAGGTAAAAAATTGAGATTTGTATTATCTAATCACTAATAGGAATTGAGAATTTGTCTGACATTAAATTACAGTAGTGAAGTGGGGAAAGCTTCAAGGGATTAACAATGTTAAATTTTTTGGAAAAAACTGAGGTTGAGACTTCTGCACATGGGATGTAAATTAAACCCATATCCAGTCTCAATCTCAGATAGACAACTGAAGCAGTCAATATGGTTTTGCAAGCAATCTTTATTTAGCGTTTGGCTTGTTCAGTATTTGATCATGGAGGGTGGGTTGGACAGTAATTAGGCTCAGTTTGACGTGTAACTTTTCTCATGGATAGCACCGTATTACTTATAATCATATTTTTGTGTTTCTCCTCCTTTTTTTTAAAAAAAAATAAATAAATATTGCATAGAACTGCAAAATTCATGATTTAAAATGATTTTGAATTTCTCCCTCAAGTCTCTAAACTCTCATTTACAGCAATTTTATTTGGGCCATGAGTTAAACTATCAATTTTGTGATCATTGGCCTTCCATGAAATTTCAGGCTCATTTTGGCCTATGCTTTTATAAATGACTTATATTACTGACATTTGGGCTGCAGATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCTGTAAGTGTGTCATTGTGCTTTCACCCTTTTTCTTTTTCCTTTTTTTTTCTGAAGGAGGTTTAGGGTGGGGGTTGTAGAGAGTGCTGATATTTGGAGAATATGGATGATTAATATCAATTTGTAGGGGTTCCAGTTGTAGAGAAATGATGCATGATTGAATCTTTTATCTTGTTTGGTGTTATTCGCAGATGGGGATATTTTGCATGC</genome_strand>
        <mrna_strand>TCCGCTTTACCGTTCTCTCTGCTTTTGCTAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGCTTGTGGCAAACTGTGTTCTGGAAGGGTCTGCTGCTTGTGAAAGGCTGTTCTTGAAGGGTCTTCGAGCAATAGAGGACCCTTCAGGCTGGATTCTTGGTTTATTCGAAGCGGTTAGTCACAGTAAGATAAGTTTTGTTGTATAAGCGGTGGGTAAAGCGGTTGTCGGTTTGCTGAACATGCCAGCTGTACAGAAGCTTTATAACGCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCT............................................................................................................................................................................................ATGGGGATATTTTGCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E722577" ref_strand="+" ref_description="SGN-E722577 [FC17CG03]">
      <seq>ctctctgcttttgctaaaaggtggcattgataatagaatgtaaaactggatcagttaagcactacatggatgtgtgatcattggtttgatttgcattgtaaatccagcttgtggcaaactgtgttctggaagggtctgctgcttgtgaaaggctgttcttgaagggtcttcgagcaataaaggacccttcaggctggattcttggtttattcgaagcggtaagtcacagtaagataagctttgttgcataagcggtgggaaaaacggttgtcggtttgctaaacatgccagctgtacataaactttataacgcttgtaaagcatcactttcacccaacggaccggtttcaaaaaacgctctctagaaatttcggtccctattggataaaatcaaaccttctgatgtgggtcttgagcaagaagcacaacttgtacggaagttggaatattactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="106182" stop="110312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106482" g_stop="106501" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106502" i_stop="107061" i_length="560">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107062" g_stop="107425" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="384" r_length="364" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107426" i_stop="109941" i_length="2516">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109942" g_stop="110012" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="456" r_length="72" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E722577" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106482" e_stop="106501"/>
          <exon e_start="107062" e_stop="107425"/>
          <exon e_start="109942" e_stop="110012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTGCTTTTGCTAAAAGGTATAATCATCTCATTCTCTGCTTATTTTCACTCACAATCCCTACTGTTAAACTGGAAAATACTCGTTTGTGTATATGTATATGCTTTTGTTGTATGTGTGTTCATGACCAATTTTGTGTGTTTTTAACTCTATTTGGTGCGATTCTCATTTGGATTGTTGATCGTCAAGTTGTGTAAATTTTTTCCAATTGAATTACGCATCTACTGAAACTCATCGATTTCTCTTGGAATATATAGTTGTACATTCTATCCCTTTCAGGTTTGCTTCTGTTTCGGTGAGTTTTCAATTTTTTTGATAAATTGCATATCTAGATTTGTTGCCGGTGAAGAGTACAGTAGCTCGCATCTAAGTTCGGTTTTAGTTGGACATGATTTTAATTGGAAATAGATGTTTTTACGTTGTAATCATTCAGCTTGGAGTTAGGGATCTAGAGGTGGAATTTGGAAATGAAAATGTAATTTTGGACGGTATTTTTTCCCCAAATTTTTTGAGTACTATTTCTGATTTTTTTGTGGATCAGAAATGTTGAGTTTAATGGTGATTTCTTCTGTTTGTTAGGTGGCATTGATAATAGAATGTAAAACTGGATCAGTTAAGCACTACATGGATGTGTGATCATTGGTTTGATTTGCATTGTAGATCCAGCTTGTGGCAAACTGTGTTCTGGAAGGGTCTGCTGCTTGTGAAAGGCTGTTCTTGAAGGGTCTTCGAGCAATAGAGGACCCTTCAGGCTGGATTCTTGGTTTATTCGAAGCGGTTAGTCACAGTAAGATAAGTTTTGTTGTATAAGCGGTGGGTAAAGCGGTTGTCGGTTTGCTGAACATGCCAGCTGTACAGAAGCTTTATAACGCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGGGTATGTATTTTTGTTTATTAATACTTAGCAAACATTTTCATATTTACTTCTAGATTTCTAATCACATCATGGTTTAAATGGTTATTTAATTTGTCTTCTATAATATCTACTCAAGTTACTTATAGATGTAACAAAAAATAGTTTTCTGGAAGATCATGTGGTAAAATTTTATCTGTCTTCCTATGTTCAATGAGAATCTCCTAAACCTTTTGGAGTGACTATCATTTTCTTGAATTTAACTTAGGTTTGATAGATGCAACAGTTTTATGATAACAAGGCATTAGAAATATTTGATTGTAAAAGTAGGCATGATATTTTTTCTCTGAATTGTTGGCTTGTCAATTTTTTTTGACTTTGTAACTATGAAAAGTCTAGAGAGAAAATTTGAAGAAAGGATCAAGCTAGTTAATAATTTGCTGCTTCAAGGACCCAAAAATTACTTAATTGTTAAATTTTGATGAACATTAGAGTCATATGTTGTATGATGAATATTCAAACTAATAAAGTACACCATTTCCATGAAAAAAAGTGATTCCCTCCTTTTGTTCCTCCATTTCATAATAATGTATAGATATTGTTTACACTTATAAGCACTAGATCCAAAAAAGTATTTTTTACCGAACTAAGGACTATCATTAGGAATAAAAAGTTGTGTCTTTATGTGAATGATCATGTACAATTCTGTAGATCTTTTGACAGGGATTATATGAAATTCTCGAGTGGCATTTTGTAGTTTGAAATCAGGAATATATGTACTTGCATGCAAACTCTTTATACCTAGTTTCTCATTTCTTGAGGAGACCAAAGGGCTGCAGCTTCTTGTTGAATTATAAATGTGTAGTAAAATAATGTTGATGATTTTATGAACAATCATGAATGATAAATTGTAACAATCATATCATGTTCATCCTTAAAATTTGCAGACAGGTCTTTAATATACTCCATATATATTGAAAAGAATTTGAGAGGAGATATCTCTAGTATTTATGGAATTGTGAAATAAATGAAAGAGAGTAATAGAAAACTTAAAACCATCAAGAGACACATCGATCACCAGTCAAACCCATGCTTGAATTTTATGCCAGAGGCTGGTATTCTCACTGAAATCCCATTTTGTTTACCAAATGAAGAAGATATGATCTTTCAACTCAATATAATGGTACCAAATTGAGCTTTTTGAAGACTTCATAAACGTAAGCTTAAAATCTAATAAATAAACAATTATAGGGGAAGGGGGGAAAGTTGAAAGCCTTAGAATTAAGAACGCATATTATAACTTTGCCTTTTAGTCATTCAATTTTTAAGTTATAACTTTGTCGCTTTCCACTTTTAGAATATTATAGATATAGATAGATGTGTGATGGTGAAGGTTTAGCAACTTTGATGGATCTTTGTGTGAAGTAACCACATTCTATCTTTCTCCTCTGCCATTGGTGGATTGAGACTAATGGAGAATATTATCTATAAAATGTAAAGAAGCTTGAAGAATGAATGTCTAACCATTGAATCACACTGTTTGATTTCTTTGGTAAGTTATGAATAAGATTGCTTATAGCTTATCTACAAGGTCAAGTGGATAACATTTATCTAAACACTCTTTGAGGATGATATCCTCTTTTTGTAATGGTCCAATTGAATAATATATGCGGGATGTCGCCAGAGAGAGAAATCAATGCATATCATATTAGTGAGTAGATCTTAAAAGCATCACTGGATTACTTCATATCAGCTTCCAAAAGATGTGAAATTTTATGCGATAAATTCATTTTTCATGCATTTATCACATTTTGCAAAATACTATAATATTTAAAGCTGGCAGCAATTCCATGGAGAAGCTATTTGGAGATTGGATGATTTTAATATTTTTCTTGATAGTTCTTTTGCGGTGGTGGTAGTTGGGGACAGATTTAGATTGGTTTTACCGTGGAGGTAAAAAATTGAGATTTGTATTATCTAATCACTAATAGGAATTGAGAATTTGTCTGACATTAAATTACAGTAGTGAAGTGGGGAAAGCTTCAAGGGATTAACAATGTTAAATTTTTTGGAAAAAACTGAGGTTGAGACTTCTGCACATGGGATGTAAATTAAACCCATATCCAGTCTCAATCTCAGATAGACAACTGAAGCAGTCAATATGGTTTTGCAAGCAATCTTTATTTAGCGTTTGGCTTGTTCAGTATTTGATCATGGAGGGTGGGTTGGACAGTAATTAGGCTCAGTTTGACGTGTAACTTTTCTCATGGATAGCACCGTATTACTTATAATCATATTTTTGTGTTTCTCCTCCTTTTTTTTAAAAAAAAATAAATAAATATTGCATAGAACTGCAAAATTCATGATTTAAAATGATTTTGAATTTCTCCCTCAAGTCTCTAAACTCTCATTTACAGCAATTTTATTTGGGCCATGAGTTAAACTATCAATTTTGTGATCATTGGCCTTCCATGAAATTTCAGGCTCATTTTGGCCTATGCTTTTATAAATGACTTATATTACTGACATTTGGGCTGCAGATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGG-AGTTGGAATAGTACTCTG</genome_strand>
        <mrna_strand>CTCTCTGCTTTTGCTAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTGATAATAGAATGTAAAACTGGATCAGTTAAGCACTACATGGATGTGTGATCATTGGTTTGATTTGCATTGTAAATCCAGCTTGTGGCAAACTGTGTTCTGGAAGGGTCTGCTGCTTGTGAAAGGCTGTTCTTGAAGGGTCTTCGAGCAATAAAGGACCCTTCAGGCTGGATTCTTGGTTTATTCGAAGCGGTAAGTCACAGTAAGATAAGCTTTGTTGCATAAGCGGTGGGAAAAACGGTTGTCGGTTTGCTAAACATGCCAGCTGTACATAAACTTTATAACGCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAAAAAACGCTCTCTAGAAATTTCGGTCCCTATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCAAACCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAAGTTGGAATATTACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E214504" ref_strand="+" ref_description="SGN-E214504 [cLEC-77-N16]">
      <seq>gtagatccagcttgtggcaaactgtgttctggaagggtctgctgcttgtgaaaggctgttcttgaagggtcttcgagcaatagaggacccttcaggctggattcttggtttattcgaagcggttagtcacagtaagataagttttgttgtataagcggtgggtaaagcggttgtcggtttgctgaacatgccagctgtacagaagctttataacgcttgtaaagcatcactttcacccaacggaccggtttcagaagacgctctcgagaaagttcggtccctattggataaaatcaagccttctgatgtgggtcttgagcaagaagcacaacttgtacggagttggaatagtactctgcacgagcgcaatggggaactacagccaccgccaccaatcaaatacctgcacttacatgaatgtgacagcttctctatggggatattttgcatgccgccttcctctatcatacctctacacaatcaccctgggatgacagtcttaagtaagctggtatatggttcctttcacgtgaaagcctatgattggatcaatattccaggtcctttggttccattggaaggtgcaagaccggcaaagctcgttaaagactgtgacatgactgctccgtgtgggacaactgctctgtatcctacttctggaggcaacatccattgtttcaaagctataactccttgtgctatttttgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="106839" stop="111495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107139" g_stop="107425" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107426" i_stop="109941" i_length="2516">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109942" g_stop="110087" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="433" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110088" i_stop="110275" i_length="188">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110423" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="581" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110424" i_stop="111132" i_length="709">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.478" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111133" g_stop="111262" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="711" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E214504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107139" e_stop="107425"/>
          <exon e_start="109942" e_stop="110087"/>
          <exon e_start="110276" e_stop="110423"/>
          <exon e_start="111133" e_stop="111262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATCCAGCTTGTGGCAAACTGTGTTCTGGAAGGGTCTGCTGCTTGTGAAAGGCTGTTCTTGAAGGGTCTTCGAGCAATAGAGGACCCTTCAGGCTGGATTCTTGGTTTATTCGAAGCGGTTAGTCACAGTAAGATAAGTTTTGTTGTATAAGCGGTGGGTAAAGCGGTTGTCGGTTTGCTGAACATGCCAGCTGTACAGAAGCTTTATAACGCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGGGTATGTATTTTTGTTTATTAATACTTAGCAAACATTTTCATATTTACTTCTAGATTTCTAATCACATCATGGTTTAAATGGTTATTTAATTTGTCTTCTATAATATCTACTCAAGTTACTTATAGATGTAACAAAAAATAGTTTTCTGGAAGATCATGTGGTAAAATTTTATCTGTCTTCCTATGTTCAATGAGAATCTCCTAAACCTTTTGGAGTGACTATCATTTTCTTGAATTTAACTTAGGTTTGATAGATGCAACAGTTTTATGATAACAAGGCATTAGAAATATTTGATTGTAAAAGTAGGCATGATATTTTTTCTCTGAATTGTTGGCTTGTCAATTTTTTTTGACTTTGTAACTATGAAAAGTCTAGAGAGAAAATTTGAAGAAAGGATCAAGCTAGTTAATAATTTGCTGCTTCAAGGACCCAAAAATTACTTAATTGTTAAATTTTGATGAACATTAGAGTCATATGTTGTATGATGAATATTCAAACTAATAAAGTACACCATTTCCATGAAAAAAAGTGATTCCCTCCTTTTGTTCCTCCATTTCATAATAATGTATAGATATTGTTTACACTTATAAGCACTAGATCCAAAAAAGTATTTTTTACCGAACTAAGGACTATCATTAGGAATAAAAAGTTGTGTCTTTATGTGAATGATCATGTACAATTCTGTAGATCTTTTGACAGGGATTATATGAAATTCTCGAGTGGCATTTTGTAGTTTGAAATCAGGAATATATGTACTTGCATGCAAACTCTTTATACCTAGTTTCTCATTTCTTGAGGAGACCAAAGGGCTGCAGCTTCTTGTTGAATTATAAATGTGTAGTAAAATAATGTTGATGATTTTATGAACAATCATGAATGATAAATTGTAACAATCATATCATGTTCATCCTTAAAATTTGCAGACAGGTCTTTAATATACTCCATATATATTGAAAAGAATTTGAGAGGAGATATCTCTAGTATTTATGGAATTGTGAAATAAATGAAAGAGAGTAATAGAAAACTTAAAACCATCAAGAGACACATCGATCACCAGTCAAACCCATGCTTGAATTTTATGCCAGAGGCTGGTATTCTCACTGAAATCCCATTTTGTTTACCAAATGAAGAAGATATGATCTTTCAACTCAATATAATGGTACCAAATTGAGCTTTTTGAAGACTTCATAAACGTAAGCTTAAAATCTAATAAATAAACAATTATAGGGGAAGGGGGGAAAGTTGAAAGCCTTAGAATTAAGAACGCATATTATAACTTTGCCTTTTAGTCATTCAATTTTTAAGTTATAACTTTGTCGCTTTCCACTTTTAGAATATTATAGATATAGATAGATGTGTGATGGTGAAGGTTTAGCAACTTTGATGGATCTTTGTGTGAAGTAACCACATTCTATCTTTCTCCTCTGCCATTGGTGGATTGAGACTAATGGAGAATATTATCTATAAAATGTAAAGAAGCTTGAAGAATGAATGTCTAACCATTGAATCACACTGTTTGATTTCTTTGGTAAGTTATGAATAAGATTGCTTATAGCTTATCTACAAGGTCAAGTGGATAACATTTATCTAAACACTCTTTGAGGATGATATCCTCTTTTTGTAATGGTCCAATTGAATAATATATGCGGGATGTCGCCAGAGAGAGAAATCAATGCATATCATATTAGTGAGTAGATCTTAAAAGCATCACTGGATTACTTCATATCAGCTTCCAAAAGATGTGAAATTTTATGCGATAAATTCATTTTTCATGCATTTATCACATTTTGCAAAATACTATAATATTTAAAGCTGGCAGCAATTCCATGGAGAAGCTATTTGGAGATTGGATGATTTTAATATTTTTCTTGATAGTTCTTTTGCGGTGGTGGTAGTTGGGGACAGATTTAGATTGGTTTTACCGTGGAGGTAAAAAATTGAGATTTGTATTATCTAATCACTAATAGGAATTGAGAATTTGTCTGACATTAAATTACAGTAGTGAAGTGGGGAAAGCTTCAAGGGATTAACAATGTTAAATTTTTTGGAAAAAACTGAGGTTGAGACTTCTGCACATGGGATGTAAATTAAACCCATATCCAGTCTCAATCTCAGATAGACAACTGAAGCAGTCAATATGGTTTTGCAAGCAATCTTTATTTAGCGTTTGGCTTGTTCAGTATTTGATCATGGAGGGTGGGTTGGACAGTAATTAGGCTCAGTTTGACGTGTAACTTTTCTCATGGATAGCACCGTATTACTTATAATCATATTTTTGTGTTTCTCCTCCTTTTTTTTAAAAAAAAATAAATAAATATTGCATAGAACTGCAAAATTCATGATTTAAAATGATTTTGAATTTCTCCCTCAAGTCTCTAAACTCTCATTTACAGCAATTTTATTTGGGCCATGAGTTAAACTATCAATTTTGTGATCATTGGCCTTCCATGAAATTTCAGGCTCATTTTGGCCTATGCTTTTATAAATGACTTATATTACTGACATTTGGGCTGCAGATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCTGTAAGTGTGTCATTGTGCTTTCACCCTTTTTCTTTTTCCTTTTTTTTTCTGAAGGAGGTTTAGGGTGGGGGTTGTAGAGAGTGCTGATATTTGGAGAATATGGATGATTAATATCAATTTGTAGGGGTTCCAGTTGTAGAGAAATGATGCATGATTGAATCTTTTATCTTGTTTGGTGTTATTCGCAGATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAGGTGCGTAGTCTTTAATTGGATGTCTAGAATGTACTTGGTGGATATGCAATCATTCCGTTGCAGAACATAGAGTTTTCGGACTAGATGTTTTTGATGTGCTTGTTTTCTGCTATATTATTTCTAATTGGGTGGCAAGCCCTTTCTCATCTCTGGTTCTGTTGGCATGGTTTTCCGGCCTTTTCTTTTTATCATATTTGTTTTGTAGTTTGTTTCATGATATGCCTATTTTGGCCTTACAAACTCCTCTTTTCGAATTCAACCATAAAACTTACTGACTGAGAGCTAGGTATAAAGATTACAACTAAGTTTGAGGGTTTAATTGCATCATCTGCATAATTTGTGCTTGCTTGTACTAATAACCACTTTGTTGAGTTCTGTAAACTTGCAAAGTCGAGGGATCAGTTCCCATCTTGTGCAGAATTTTGTATCCCATGCACATAATTATATTACTTGTAAATAGTTGATTGCAACTGCGTGACCAAAGATTCTGAATAGAGAAATGCTAGTTTTTACGAGTTTATTTTCTCTTTCTTTATTGGTTCTAGTTTATCTAAGGTATTATTTTTTGGGATTAATGTTCATCATACAGGATTCTACTGCTACTTCTTCTCGACCTCTTGAATTCATATACAGTTACATATATACATACAATATACACACATCGCAGTTTGCTATCTTCAGCTGCTCGCTCCTAATGTTGCTTGCTCAGGTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACAT</genome_strand>
        <mrna_strand>GTAGATCCAGCTTGTGGCAAACTGTGTTCTGGAAGGGTCTGCTGCTTGTGAAAGGCTGTTCTTGAAGGGTCTTCGAGCAATAGAGGACCCTTCAGGCTGGATTCTTGGTTTATTCGAAGCGGTTAGTCACAGTAAGATAAGTTTTGTTGTATAAGCGGTGGGTAAAGCGGTTGTCGGTTTGCTGAACATGCCAGCTGTACAGAAGCTTTATAACGCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCT............................................................................................................................................................................................ATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E593185" ref_strand="+" ref_description="SGN-E593185 [36409]">
      <seq>gttttgttgtataagctgtgggtatagcggttgtcggtttgctgaacatgccagctgtacaaaagctttataatgcttgtaaagcatcactttcacctaacggaccggtttccgaagacgctcttgagaaagtccgttccctattggataaaatcaagccctctgatgtaggtcttgaggaagaagcacaacttgtacggagttggaatagtactctgcacgagcgcaatgggggactgcagccaccgccaccgccaccaatcaaatacctgcacttacatgaatgtgacagcttctctatggggatattttgcatgccaccttcctctatcatacctctacacaatcaccctggaatgacagttttaagtaagctggtatatggttcctttcatgtgaaagcctatgattggatcagtattccaggtcctttggttccattggaaggtgcaagaccggcaaagcttgttaaagactgtgacatgactgctccgtgtgggacaactgctctgtatcctacttctggaggcaacatccattgtttcaaagccacaactccttgtgctatttttgacatcctttctccaacttactcttctgaggatggacggcattgcacttatttccggaggtctccagtagtggatctaccaggtgaactcgaaggtggatggaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="106979" stop="111495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107279" g_stop="107425" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107426" i_stop="109941" i_length="2516">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109942" g_stop="110087" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="299" r_length="152" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110088" i_stop="110275" i_length="188">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110423" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="447" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110424" i_stop="111132" i_length="709">
            <donor d_prob="0.885" d_score="0.98"/>
            <acceptor a_prob="0.478" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111133" g_stop="111339" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="654" r_length="207" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111340" i_stop="111419" i_length="80">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111420" g_stop="111438" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="674" r_length="20" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E593185" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107279" e_stop="107425"/>
          <exon e_start="109942" e_stop="110087"/>
          <exon e_start="110276" e_stop="110423"/>
          <exon e_start="111133" e_stop="111339"/>
          <exon e_start="111420" e_stop="111438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGTTGTATAAGCGGTGGGTAAAGCGGTTGTCGGTTTGCTGAACATGCCAGCTGTACAGAAGCTTTATAACGCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGGGTATGTATTTTTGTTTATTAATACTTAGCAAACATTTTCATATTTACTTCTAGATTTCTAATCACATCATGGTTTAAATGGTTATTTAATTTGTCTTCTATAATATCTACTCAAGTTACTTATAGATGTAACAAAAAATAGTTTTCTGGAAGATCATGTGGTAAAATTTTATCTGTCTTCCTATGTTCAATGAGAATCTCCTAAACCTTTTGGAGTGACTATCATTTTCTTGAATTTAACTTAGGTTTGATAGATGCAACAGTTTTATGATAACAAGGCATTAGAAATATTTGATTGTAAAAGTAGGCATGATATTTTTTCTCTGAATTGTTGGCTTGTCAATTTTTTTTGACTTTGTAACTATGAAAAGTCTAGAGAGAAAATTTGAAGAAAGGATCAAGCTAGTTAATAATTTGCTGCTTCAAGGACCCAAAAATTACTTAATTGTTAAATTTTGATGAACATTAGAGTCATATGTTGTATGATGAATATTCAAACTAATAAAGTACACCATTTCCATGAAAAAAAGTGATTCCCTCCTTTTGTTCCTCCATTTCATAATAATGTATAGATATTGTTTACACTTATAAGCACTAGATCCAAAAAAGTATTTTTTACCGAACTAAGGACTATCATTAGGAATAAAAAGTTGTGTCTTTATGTGAATGATCATGTACAATTCTGTAGATCTTTTGACAGGGATTATATGAAATTCTCGAGTGGCATTTTGTAGTTTGAAATCAGGAATATATGTACTTGCATGCAAACTCTTTATACCTAGTTTCTCATTTCTTGAGGAGACCAAAGGGCTGCAGCTTCTTGTTGAATTATAAATGTGTAGTAAAATAATGTTGATGATTTTATGAACAATCATGAATGATAAATTGTAACAATCATATCATGTTCATCCTTAAAATTTGCAGACAGGTCTTTAATATACTCCATATATATTGAAAAGAATTTGAGAGGAGATATCTCTAGTATTTATGGAATTGTGAAATAAATGAAAGAGAGTAATAGAAAACTTAAAACCATCAAGAGACACATCGATCACCAGTCAAACCCATGCTTGAATTTTATGCCAGAGGCTGGTATTCTCACTGAAATCCCATTTTGTTTACCAAATGAAGAAGATATGATCTTTCAACTCAATATAATGGTACCAAATTGAGCTTTTTGAAGACTTCATAAACGTAAGCTTAAAATCTAATAAATAAACAATTATAGGGGAAGGGGGGAAAGTTGAAAGCCTTAGAATTAAGAACGCATATTATAACTTTGCCTTTTAGTCATTCAATTTTTAAGTTATAACTTTGTCGCTTTCCACTTTTAGAATATTATAGATATAGATAGATGTGTGATGGTGAAGGTTTAGCAACTTTGATGGATCTTTGTGTGAAGTAACCACATTCTATCTTTCTCCTCTGCCATTGGTGGATTGAGACTAATGGAGAATATTATCTATAAAATGTAAAGAAGCTTGAAGAATGAATGTCTAACCATTGAATCACACTGTTTGATTTCTTTGGTAAGTTATGAATAAGATTGCTTATAGCTTATCTACAAGGTCAAGTGGATAACATTTATCTAAACACTCTTTGAGGATGATATCCTCTTTTTGTAATGGTCCAATTGAATAATATATGCGGGATGTCGCCAGAGAGAGAAATCAATGCATATCATATTAGTGAGTAGATCTTAAAAGCATCACTGGATTACTTCATATCAGCTTCCAAAAGATGTGAAATTTTATGCGATAAATTCATTTTTCATGCATTTATCACATTTTGCAAAATACTATAATATTTAAAGCTGGCAGCAATTCCATGGAGAAGCTATTTGGAGATTGGATGATTTTAATATTTTTCTTGATAGTTCTTTTGCGGTGGTGGTAGTTGGGGACAGATTTAGATTGGTTTTACCGTGGAGGTAAAAAATTGAGATTTGTATTATCTAATCACTAATAGGAATTGAGAATTTGTCTGACATTAAATTACAGTAGTGAAGTGGGGAAAGCTTCAAGGGATTAACAATGTTAAATTTTTTGGAAAAAACTGAGGTTGAGACTTCTGCACATGGGATGTAAATTAAACCCATATCCAGTCTCAATCTCAGATAGACAACTGAAGCAGTCAATATGGTTTTGCAAGCAATCTTTATTTAGCGTTTGGCTTGTTCAGTATTTGATCATGGAGGGTGGGTTGGACAGTAATTAGGCTCAGTTTGACGTGTAACTTTTCTCATGGATAGCACCGTATTACTTATAATCATATTTTTGTGTTTCTCCTCCTTTTTTTTAAAAAAAAATAAATAAATATTGCATAGAACTGCAAAATTCATGATTTAAAATGATTTTGAATTTCTCCCTCAAGTCTCTAAACTCTCATTTACAGCAATTTTATTTGGGCCATGAGTTAAACTATCAATTTTGTGATCATTGGCCTTCCATGAAATTTCAGGCTCATTTTGGCCTATGCTTTTATAAATGACTTATATTACTGACATTTGGGCTGCAGATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACT--A--CA--GCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCTGTAAGTGTGTCATTGTGCTTTCACCCTTTTTCTTTTTCCTTTTTTTTTCTGAAGGAGGTTTAGGGTGGGGGTTGTAGAGAGTGCTGATATTTGGAGAATATGGATGATTAATATCAATTTGTAGGGGTTCCAGTTGTAGAGAAATGATGCATGATTGAATCTTTTATCTTGTTTGGTGTTATTCGCAGATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAGGTGCGTAGTCTTTAATTGGATGTCTAGAATGTACTTGGTGGATATGCAATCATTCCGTTGCAGAACATAGAGTTTTCGGACTAGATGTTTTTGATGTGCTTGTTTTCTGCTATATTATTTCTAATTGGGTGGCAAGCCCTTTCTCATCTCTGGTTCTGTTGGCATGGTTTTCCGGCCTTTTCTTTTTATCATATTTGTTTTGTAGTTTGTTTCATGATATGCCTATTTTGGCCTTACAAACTCCTCTTTTCGAATTCAACCATAAAACTTACTGACTGAGAGCTAGGTATAAAGATTACAACTAAGTTTGAGGGTTTAATTGCATCATCTGCATAATTTGTGCTTGCTTGTACTAATAACCACTTTGTTGAGTTCTGTAAACTTGCAAAGTCGAGGGATCAGTTCCCATCTTGTGCAGAATTTTGTATCCCATGCACATAATTATATTACTTGTAAATAGTTGATTGCAACTGCGTGACCAAAGATTCTGAATAGAGAAATGCTAGTTTTTACGAGTTTATTTTCTCTTTCTTTATTGGTTCTAGTTTATCTAAGGTATTATTTTTTGGGATTAATGTTCATCATACAGGATTCTACTGCTACTTCTTCTCGACCTCTTGAATTCATATACAGTTACATATATACATACAATATACACACATCGCAGTTTGCTATCTTCAGCTGCTCGCTCCTAATGTTGCTTGCTCAGGTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACATCCTTTCTCCGCCTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGCGGATCTGCCAGGTAGTTGCACTGTGAGAAATTTTGCACAAATATGAATTGTATTGAAAATCTGAAGTACTTTGACATGTTTTTTTTTTAAGGTGAACTCG-AGGTGGATGG</genome_strand>
        <mrna_strand>GTTTTGTTGTATAAGCTGTGGGTATAGCGGTTGTCGGTTTGCTGAACATGCCAGCTGTACAAAAGCTTTATAATGCTTGTAAAGCATCACTTTCACCTAACGGACCGGTTTCCGAAGACGCTCTTGAGAAAGTCCGTTCCCTATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCAAGCCCTCTGATGTAGGTCTTGAGGAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGGACTGCAGCCACCGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCT............................................................................................................................................................................................ATGGGGATATTTTGCATGCCACCTTCCTCTATCATACCTCTACACAATCACCCTGGAATGACAGTTTTAAGTAAGCTGGTATATGGTTCCTTTCATGTGAAAGCCTATGATTGGATCAGTATTCCAGGTCCTTTGGTTCCATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGACCGGCAAAGCTTGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCCACAACTCCTTGTGCTATTTTTGACATCCTTTCTCCAACTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGTGGATCTACCAG................................................................................GTGAACTCGAAGGTGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E368887" ref_strand="+" ref_description="SGN-E368887 [TUS-26-K7]">
      <seq>gcttgtaaagcatcactttcacccaacggaccggtttcagaagacgctctcgagaaagttcggtccctattggataaaatcaagccttctgatgtgggtcttgagcaagaagcacaacttgtacggagttggaatagtactctgcacgagcgcaatggggaactacagccaccgccaccaatcaaatacctgcacttacatgaatgtgacagcttctctatggggatattttgcatgccgccttcctctatcatacctctacacaatcaccctgggatgacagtcttaagtaagctggtatatggttcctttcacgtgaaagcctatgattggatcaatattccaggtcctttggttccattggaaggtgcaagaccggcaaagctcgttaaagactgtgacatgactgctccgtgtgggacaactgctctgtatcctacttctggaggcaacatccattgtttcaaagctataactccttgtgctatttttgacatcctttctccgccttactcttctgaggatggacggcattgcacttatttccggaggtctccagtagcggatctgccaggtgaactcgaggtggatggagtgacattctccgacgtgacttggttgggagagtttcaacttcccgatgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="107053" stop="111495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107353" g_stop="107425" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107426" i_stop="109941" i_length="2516">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109942" g_stop="110087" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="219" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110088" i_stop="110275" i_length="188">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110423" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="367" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110424" i_stop="111132" i_length="709">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.478" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111133" g_stop="111339" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="574" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111340" i_stop="111419" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111420" g_stop="111492" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="647" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E368887" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107353" e_stop="107425"/>
          <exon e_start="109942" e_stop="110087"/>
          <exon e_start="110276" e_stop="110423"/>
          <exon e_start="111133" e_stop="111339"/>
          <exon e_start="111420" e_stop="111492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGGGTATGTATTTTTGTTTATTAATACTTAGCAAACATTTTCATATTTACTTCTAGATTTCTAATCACATCATGGTTTAAATGGTTATTTAATTTGTCTTCTATAATATCTACTCAAGTTACTTATAGATGTAACAAAAAATAGTTTTCTGGAAGATCATGTGGTAAAATTTTATCTGTCTTCCTATGTTCAATGAGAATCTCCTAAACCTTTTGGAGTGACTATCATTTTCTTGAATTTAACTTAGGTTTGATAGATGCAACAGTTTTATGATAACAAGGCATTAGAAATATTTGATTGTAAAAGTAGGCATGATATTTTTTCTCTGAATTGTTGGCTTGTCAATTTTTTTTGACTTTGTAACTATGAAAAGTCTAGAGAGAAAATTTGAAGAAAGGATCAAGCTAGTTAATAATTTGCTGCTTCAAGGACCCAAAAATTACTTAATTGTTAAATTTTGATGAACATTAGAGTCATATGTTGTATGATGAATATTCAAACTAATAAAGTACACCATTTCCATGAAAAAAAGTGATTCCCTCCTTTTGTTCCTCCATTTCATAATAATGTATAGATATTGTTTACACTTATAAGCACTAGATCCAAAAAAGTATTTTTTACCGAACTAAGGACTATCATTAGGAATAAAAAGTTGTGTCTTTATGTGAATGATCATGTACAATTCTGTAGATCTTTTGACAGGGATTATATGAAATTCTCGAGTGGCATTTTGTAGTTTGAAATCAGGAATATATGTACTTGCATGCAAACTCTTTATACCTAGTTTCTCATTTCTTGAGGAGACCAAAGGGCTGCAGCTTCTTGTTGAATTATAAATGTGTAGTAAAATAATGTTGATGATTTTATGAACAATCATGAATGATAAATTGTAACAATCATATCATGTTCATCCTTAAAATTTGCAGACAGGTCTTTAATATACTCCATATATATTGAAAAGAATTTGAGAGGAGATATCTCTAGTATTTATGGAATTGTGAAATAAATGAAAGAGAGTAATAGAAAACTTAAAACCATCAAGAGACACATCGATCACCAGTCAAACCCATGCTTGAATTTTATGCCAGAGGCTGGTATTCTCACTGAAATCCCATTTTGTTTACCAAATGAAGAAGATATGATCTTTCAACTCAATATAATGGTACCAAATTGAGCTTTTTGAAGACTTCATAAACGTAAGCTTAAAATCTAATAAATAAACAATTATAGGGGAAGGGGGGAAAGTTGAAAGCCTTAGAATTAAGAACGCATATTATAACTTTGCCTTTTAGTCATTCAATTTTTAAGTTATAACTTTGTCGCTTTCCACTTTTAGAATATTATAGATATAGATAGATGTGTGATGGTGAAGGTTTAGCAACTTTGATGGATCTTTGTGTGAAGTAACCACATTCTATCTTTCTCCTCTGCCATTGGTGGATTGAGACTAATGGAGAATATTATCTATAAAATGTAAAGAAGCTTGAAGAATGAATGTCTAACCATTGAATCACACTGTTTGATTTCTTTGGTAAGTTATGAATAAGATTGCTTATAGCTTATCTACAAGGTCAAGTGGATAACATTTATCTAAACACTCTTTGAGGATGATATCCTCTTTTTGTAATGGTCCAATTGAATAATATATGCGGGATGTCGCCAGAGAGAGAAATCAATGCATATCATATTAGTGAGTAGATCTTAAAAGCATCACTGGATTACTTCATATCAGCTTCCAAAAGATGTGAAATTTTATGCGATAAATTCATTTTTCATGCATTTATCACATTTTGCAAAATACTATAATATTTAAAGCTGGCAGCAATTCCATGGAGAAGCTATTTGGAGATTGGATGATTTTAATATTTTTCTTGATAGTTCTTTTGCGGTGGTGGTAGTTGGGGACAGATTTAGATTGGTTTTACCGTGGAGGTAAAAAATTGAGATTTGTATTATCTAATCACTAATAGGAATTGAGAATTTGTCTGACATTAAATTACAGTAGTGAAGTGGGGAAAGCTTCAAGGGATTAACAATGTTAAATTTTTTGGAAAAAACTGAGGTTGAGACTTCTGCACATGGGATGTAAATTAAACCCATATCCAGTCTCAATCTCAGATAGACAACTGAAGCAGTCAATATGGTTTTGCAAGCAATCTTTATTTAGCGTTTGGCTTGTTCAGTATTTGATCATGGAGGGTGGGTTGGACAGTAATTAGGCTCAGTTTGACGTGTAACTTTTCTCATGGATAGCACCGTATTACTTATAATCATATTTTTGTGTTTCTCCTCCTTTTTTTTAAAAAAAAATAAATAAATATTGCATAGAACTGCAAAATTCATGATTTAAAATGATTTTGAATTTCTCCCTCAAGTCTCTAAACTCTCATTTACAGCAATTTTATTTGGGCCATGAGTTAAACTATCAATTTTGTGATCATTGGCCTTCCATGAAATTTCAGGCTCATTTTGGCCTATGCTTTTATAAATGACTTATATTACTGACATTTGGGCTGCAGATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCTGTAAGTGTGTCATTGTGCTTTCACCCTTTTTCTTTTTCCTTTTTTTTTCTGAAGGAGGTTTAGGGTGGGGGTTGTAGAGAGTGCTGATATTTGGAGAATATGGATGATTAATATCAATTTGTAGGGGTTCCAGTTGTAGAGAAATGATGCATGATTGAATCTTTTATCTTGTTTGGTGTTATTCGCAGATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAGGTGCGTAGTCTTTAATTGGATGTCTAGAATGTACTTGGTGGATATGCAATCATTCCGTTGCAGAACATAGAGTTTTCGGACTAGATGTTTTTGATGTGCTTGTTTTCTGCTATATTATTTCTAATTGGGTGGCAAGCCCTTTCTCATCTCTGGTTCTGTTGGCATGGTTTTCCGGCCTTTTCTTTTTATCATATTTGTTTTGTAGTTTGTTTCATGATATGCCTATTTTGGCCTTACAAACTCCTCTTTTCGAATTCAACCATAAAACTTACTGACTGAGAGCTAGGTATAAAGATTACAACTAAGTTTGAGGGTTTAATTGCATCATCTGCATAATTTGTGCTTGCTTGTACTAATAACCACTTTGTTGAGTTCTGTAAACTTGCAAAGTCGAGGGATCAGTTCCCATCTTGTGCAGAATTTTGTATCCCATGCACATAATTATATTACTTGTAAATAGTTGATTGCAACTGCGTGACCAAAGATTCTGAATAGAGAAATGCTAGTTTTTACGAGTTTATTTTCTCTTTCTTTATTGGTTCTAGTTTATCTAAGGTATTATTTTTTGGGATTAATGTTCATCATACAGGATTCTACTGCTACTTCTTCTCGACCTCTTGAATTCATATACAGTTACATATATACATACAATATACACACATCGCAGTTTGCTATCTTCAGCTGCTCGCTCCTAATGTTGCTTGCTCAGGTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACATCCTTTCTCCGCCTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGCGGATCTGCCAGGTAGTTGCACTGTGAGAAATTTTGCACAAATATGAATTGTATTGAAAATCTGAAGTACTTTGACATGTTTTTTTTTTAAGGTGAACTCGAGGTGGATGGAGTGACATTCTCCGACGTGACTTGGTTGGGAGAGTTTCAACTTCCCGATGACTT</genome_strand>
        <mrna_strand>GCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCT............................................................................................................................................................................................ATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACATCCTTTCTCCGCCTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGCGGATCTGCCAG................................................................................GTGAACTCGAGGTGGATGGAGTGACATTCTCCGACGTGACTTGGTTGGGAGAGTTTCAACTTCCCGATGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E259655" ref_strand="+" ref_description="SGN-E259655 [cLEG-42-E20]">
      <seq>gcttgtaaagcatcactttcacccaacggaccggtttcagaagacgctctcgagaaagttcggtccctattggataaaatcaagccttctgatgtgggtcttgagcaagaagcacaacttgtacggagttggaatagtactctgcacgagcgcaatggggaactacagccaccgccaccaatcaaatacctgcacttacatgaatgtgacagcttctctatggggatattttgcatgccgccttcctctatcatacctctacacaatcaccctgggatgacagtcttaagtaagctggtatatggttcctttcacgtgaaagcctatgattggatcaatattccaggtcctttggttccattggaaggtgcaagaccggcaaagctcgttaaagactgtgacatgactgctccgtgtgggacaactgctctgtatcctacttctggaggcaacatccattgtttcaaagctataactccttgtgctatttttgacatcctttctccgccttactcttctgaggatggacggcattgcacttatttccggaggtctccagtagcggatctgccaggtgaactcgaggtggatggagtgacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="107053" stop="111495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107353" g_stop="107425" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107426" i_stop="109941" i_length="2516">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109942" g_stop="110087" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="219" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110088" i_stop="110275" i_length="188">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110423" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="367" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110424" i_stop="111132" i_length="709">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.478" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111133" g_stop="111339" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="574" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111340" i_stop="111419" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111420" g_stop="111448" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="603" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E259655" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107353" e_stop="107425"/>
          <exon e_start="109942" e_stop="110087"/>
          <exon e_start="110276" e_stop="110423"/>
          <exon e_start="111133" e_stop="111339"/>
          <exon e_start="111420" e_stop="111448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGGGTATGTATTTTTGTTTATTAATACTTAGCAAACATTTTCATATTTACTTCTAGATTTCTAATCACATCATGGTTTAAATGGTTATTTAATTTGTCTTCTATAATATCTACTCAAGTTACTTATAGATGTAACAAAAAATAGTTTTCTGGAAGATCATGTGGTAAAATTTTATCTGTCTTCCTATGTTCAATGAGAATCTCCTAAACCTTTTGGAGTGACTATCATTTTCTTGAATTTAACTTAGGTTTGATAGATGCAACAGTTTTATGATAACAAGGCATTAGAAATATTTGATTGTAAAAGTAGGCATGATATTTTTTCTCTGAATTGTTGGCTTGTCAATTTTTTTTGACTTTGTAACTATGAAAAGTCTAGAGAGAAAATTTGAAGAAAGGATCAAGCTAGTTAATAATTTGCTGCTTCAAGGACCCAAAAATTACTTAATTGTTAAATTTTGATGAACATTAGAGTCATATGTTGTATGATGAATATTCAAACTAATAAAGTACACCATTTCCATGAAAAAAAGTGATTCCCTCCTTTTGTTCCTCCATTTCATAATAATGTATAGATATTGTTTACACTTATAAGCACTAGATCCAAAAAAGTATTTTTTACCGAACTAAGGACTATCATTAGGAATAAAAAGTTGTGTCTTTATGTGAATGATCATGTACAATTCTGTAGATCTTTTGACAGGGATTATATGAAATTCTCGAGTGGCATTTTGTAGTTTGAAATCAGGAATATATGTACTTGCATGCAAACTCTTTATACCTAGTTTCTCATTTCTTGAGGAGACCAAAGGGCTGCAGCTTCTTGTTGAATTATAAATGTGTAGTAAAATAATGTTGATGATTTTATGAACAATCATGAATGATAAATTGTAACAATCATATCATGTTCATCCTTAAAATTTGCAGACAGGTCTTTAATATACTCCATATATATTGAAAAGAATTTGAGAGGAGATATCTCTAGTATTTATGGAATTGTGAAATAAATGAAAGAGAGTAATAGAAAACTTAAAACCATCAAGAGACACATCGATCACCAGTCAAACCCATGCTTGAATTTTATGCCAGAGGCTGGTATTCTCACTGAAATCCCATTTTGTTTACCAAATGAAGAAGATATGATCTTTCAACTCAATATAATGGTACCAAATTGAGCTTTTTGAAGACTTCATAAACGTAAGCTTAAAATCTAATAAATAAACAATTATAGGGGAAGGGGGGAAAGTTGAAAGCCTTAGAATTAAGAACGCATATTATAACTTTGCCTTTTAGTCATTCAATTTTTAAGTTATAACTTTGTCGCTTTCCACTTTTAGAATATTATAGATATAGATAGATGTGTGATGGTGAAGGTTTAGCAACTTTGATGGATCTTTGTGTGAAGTAACCACATTCTATCTTTCTCCTCTGCCATTGGTGGATTGAGACTAATGGAGAATATTATCTATAAAATGTAAAGAAGCTTGAAGAATGAATGTCTAACCATTGAATCACACTGTTTGATTTCTTTGGTAAGTTATGAATAAGATTGCTTATAGCTTATCTACAAGGTCAAGTGGATAACATTTATCTAAACACTCTTTGAGGATGATATCCTCTTTTTGTAATGGTCCAATTGAATAATATATGCGGGATGTCGCCAGAGAGAGAAATCAATGCATATCATATTAGTGAGTAGATCTTAAAAGCATCACTGGATTACTTCATATCAGCTTCCAAAAGATGTGAAATTTTATGCGATAAATTCATTTTTCATGCATTTATCACATTTTGCAAAATACTATAATATTTAAAGCTGGCAGCAATTCCATGGAGAAGCTATTTGGAGATTGGATGATTTTAATATTTTTCTTGATAGTTCTTTTGCGGTGGTGGTAGTTGGGGACAGATTTAGATTGGTTTTACCGTGGAGGTAAAAAATTGAGATTTGTATTATCTAATCACTAATAGGAATTGAGAATTTGTCTGACATTAAATTACAGTAGTGAAGTGGGGAAAGCTTCAAGGGATTAACAATGTTAAATTTTTTGGAAAAAACTGAGGTTGAGACTTCTGCACATGGGATGTAAATTAAACCCATATCCAGTCTCAATCTCAGATAGACAACTGAAGCAGTCAATATGGTTTTGCAAGCAATCTTTATTTAGCGTTTGGCTTGTTCAGTATTTGATCATGGAGGGTGGGTTGGACAGTAATTAGGCTCAGTTTGACGTGTAACTTTTCTCATGGATAGCACCGTATTACTTATAATCATATTTTTGTGTTTCTCCTCCTTTTTTTTAAAAAAAAATAAATAAATATTGCATAGAACTGCAAAATTCATGATTTAAAATGATTTTGAATTTCTCCCTCAAGTCTCTAAACTCTCATTTACAGCAATTTTATTTGGGCCATGAGTTAAACTATCAATTTTGTGATCATTGGCCTTCCATGAAATTTCAGGCTCATTTTGGCCTATGCTTTTATAAATGACTTATATTACTGACATTTGGGCTGCAGATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCTGTAAGTGTGTCATTGTGCTTTCACCCTTTTTCTTTTTCCTTTTTTTTTCTGAAGGAGGTTTAGGGTGGGGGTTGTAGAGAGTGCTGATATTTGGAGAATATGGATGATTAATATCAATTTGTAGGGGTTCCAGTTGTAGAGAAATGATGCATGATTGAATCTTTTATCTTGTTTGGTGTTATTCGCAGATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAGGTGCGTAGTCTTTAATTGGATGTCTAGAATGTACTTGGTGGATATGCAATCATTCCGTTGCAGAACATAGAGTTTTCGGACTAGATGTTTTTGATGTGCTTGTTTTCTGCTATATTATTTCTAATTGGGTGGCAAGCCCTTTCTCATCTCTGGTTCTGTTGGCATGGTTTTCCGGCCTTTTCTTTTTATCATATTTGTTTTGTAGTTTGTTTCATGATATGCCTATTTTGGCCTTACAAACTCCTCTTTTCGAATTCAACCATAAAACTTACTGACTGAGAGCTAGGTATAAAGATTACAACTAAGTTTGAGGGTTTAATTGCATCATCTGCATAATTTGTGCTTGCTTGTACTAATAACCACTTTGTTGAGTTCTGTAAACTTGCAAAGTCGAGGGATCAGTTCCCATCTTGTGCAGAATTTTGTATCCCATGCACATAATTATATTACTTGTAAATAGTTGATTGCAACTGCGTGACCAAAGATTCTGAATAGAGAAATGCTAGTTTTTACGAGTTTATTTTCTCTTTCTTTATTGGTTCTAGTTTATCTAAGGTATTATTTTTTGGGATTAATGTTCATCATACAGGATTCTACTGCTACTTCTTCTCGACCTCTTGAATTCATATACAGTTACATATATACATACAATATACACACATCGCAGTTTGCTATCTTCAGCTGCTCGCTCCTAATGTTGCTTGCTCAGGTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACATCCTTTCTCCGCCTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGCGGATCTGCCAGGTAGTTGCACTGTGAGAAATTTTGCACAAATATGAATTGTATTGAAAATCTGAAGTACTTTGACATGTTTTTTTTTTAAGGTGAACTCGAGGTGGATGGAGTGACATTC</genome_strand>
        <mrna_strand>GCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCT............................................................................................................................................................................................ATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACATCCTTTCTCCGCCTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGCGGATCTGCCAG................................................................................GTGAACTCGAGGTGGATGGAGTGACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E260076" ref_strand="+" ref_description="SGN-E260076 [cLEG-52-J21]">
      <seq>gcttgtaaagcatcactttcacccaacggaccggtttcagaagacgctctcgagaaagttcggtccctattggataaaatcaagccttctgatgtgggtcttgagcaagaagcacaacttgtacggagttggaatagtactctgcacgagcgcaatggggaactacagccaccgccaccaatcaaatacctgcacttacatgaatgtgacagcttctctatggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="107053" stop="110389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107353" g_stop="107425" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107426" i_stop="109941" i_length="2516">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109942" g_stop="110087" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="219" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110088" i_stop="110275" i_length="188">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110283" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="227" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E260076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107353" e_stop="107425"/>
          <exon e_start="109942" e_stop="110087"/>
          <exon e_start="110276" e_stop="110283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGGGTATGTATTTTTGTTTATTAATACTTAGCAAACATTTTCATATTTACTTCTAGATTTCTAATCACATCATGGTTTAAATGGTTATTTAATTTGTCTTCTATAATATCTACTCAAGTTACTTATAGATGTAACAAAAAATAGTTTTCTGGAAGATCATGTGGTAAAATTTTATCTGTCTTCCTATGTTCAATGAGAATCTCCTAAACCTTTTGGAGTGACTATCATTTTCTTGAATTTAACTTAGGTTTGATAGATGCAACAGTTTTATGATAACAAGGCATTAGAAATATTTGATTGTAAAAGTAGGCATGATATTTTTTCTCTGAATTGTTGGCTTGTCAATTTTTTTTGACTTTGTAACTATGAAAAGTCTAGAGAGAAAATTTGAAGAAAGGATCAAGCTAGTTAATAATTTGCTGCTTCAAGGACCCAAAAATTACTTAATTGTTAAATTTTGATGAACATTAGAGTCATATGTTGTATGATGAATATTCAAACTAATAAAGTACACCATTTCCATGAAAAAAAGTGATTCCCTCCTTTTGTTCCTCCATTTCATAATAATGTATAGATATTGTTTACACTTATAAGCACTAGATCCAAAAAAGTATTTTTTACCGAACTAAGGACTATCATTAGGAATAAAAAGTTGTGTCTTTATGTGAATGATCATGTACAATTCTGTAGATCTTTTGACAGGGATTATATGAAATTCTCGAGTGGCATTTTGTAGTTTGAAATCAGGAATATATGTACTTGCATGCAAACTCTTTATACCTAGTTTCTCATTTCTTGAGGAGACCAAAGGGCTGCAGCTTCTTGTTGAATTATAAATGTGTAGTAAAATAATGTTGATGATTTTATGAACAATCATGAATGATAAATTGTAACAATCATATCATGTTCATCCTTAAAATTTGCAGACAGGTCTTTAATATACTCCATATATATTGAAAAGAATTTGAGAGGAGATATCTCTAGTATTTATGGAATTGTGAAATAAATGAAAGAGAGTAATAGAAAACTTAAAACCATCAAGAGACACATCGATCACCAGTCAAACCCATGCTTGAATTTTATGCCAGAGGCTGGTATTCTCACTGAAATCCCATTTTGTTTACCAAATGAAGAAGATATGATCTTTCAACTCAATATAATGGTACCAAATTGAGCTTTTTGAAGACTTCATAAACGTAAGCTTAAAATCTAATAAATAAACAATTATAGGGGAAGGGGGGAAAGTTGAAAGCCTTAGAATTAAGAACGCATATTATAACTTTGCCTTTTAGTCATTCAATTTTTAAGTTATAACTTTGTCGCTTTCCACTTTTAGAATATTATAGATATAGATAGATGTGTGATGGTGAAGGTTTAGCAACTTTGATGGATCTTTGTGTGAAGTAACCACATTCTATCTTTCTCCTCTGCCATTGGTGGATTGAGACTAATGGAGAATATTATCTATAAAATGTAAAGAAGCTTGAAGAATGAATGTCTAACCATTGAATCACACTGTTTGATTTCTTTGGTAAGTTATGAATAAGATTGCTTATAGCTTATCTACAAGGTCAAGTGGATAACATTTATCTAAACACTCTTTGAGGATGATATCCTCTTTTTGTAATGGTCCAATTGAATAATATATGCGGGATGTCGCCAGAGAGAGAAATCAATGCATATCATATTAGTGAGTAGATCTTAAAAGCATCACTGGATTACTTCATATCAGCTTCCAAAAGATGTGAAATTTTATGCGATAAATTCATTTTTCATGCATTTATCACATTTTGCAAAATACTATAATATTTAAAGCTGGCAGCAATTCCATGGAGAAGCTATTTGGAGATTGGATGATTTTAATATTTTTCTTGATAGTTCTTTTGCGGTGGTGGTAGTTGGGGACAGATTTAGATTGGTTTTACCGTGGAGGTAAAAAATTGAGATTTGTATTATCTAATCACTAATAGGAATTGAGAATTTGTCTGACATTAAATTACAGTAGTGAAGTGGGGAAAGCTTCAAGGGATTAACAATGTTAAATTTTTTGGAAAAAACTGAGGTTGAGACTTCTGCACATGGGATGTAAATTAAACCCATATCCAGTCTCAATCTCAGATAGACAACTGAAGCAGTCAATATGGTTTTGCAAGCAATCTTTATTTAGCGTTTGGCTTGTTCAGTATTTGATCATGGAGGGTGGGTTGGACAGTAATTAGGCTCAGTTTGACGTGTAACTTTTCTCATGGATAGCACCGTATTACTTATAATCATATTTTTGTGTTTCTCCTCCTTTTTTTTAAAAAAAAATAAATAAATATTGCATAGAACTGCAAAATTCATGATTTAAAATGATTTTGAATTTCTCCCTCAAGTCTCTAAACTCTCATTTACAGCAATTTTATTTGGGCCATGAGTTAAACTATCAATTTTGTGATCATTGGCCTTCCATGAAATTTCAGGCTCATTTTGGCCTATGCTTTTATAAATGACTTATATTACTGACATTTGGGCTGCAGATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCTGTAAGTGTGTCATTGTGCTTTCACCCTTTTTCTTTTTCCTTTTTTTTTCTGAAGGAGGTTTAGGGTGGGGGTTGTAGAGAGTGCTGATATTTGGAGAATATGGATGATTAATATCAATTTGTAGGGGTTCCAGTTGTAGAGAAATGATGCATGATTGAATCTTTTATCTTGTTTGGTGTTATTCGCAGATGGGGAT</genome_strand>
        <mrna_strand>GCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCT............................................................................................................................................................................................ATGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-l41svI/sgn_ests_tomato_potato" ref_id="SGN-E258019" ref_strand="+" ref_description="SGN-E258019 [cLEG-48-L4]">
      <seq>gcttgtaaagcatcactttcacccaacggaccggtttcagaagacgctctctagaaagttcggtccctattggataaaatcaagccttctgatgtgggtcttgagcaagaagcacaacttgtacggagttggaatagtactctgcacgagcgcaatggggaactacagccacccccaccaatcaaatacctgcacttacatgaatgtgacagcttctctatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-Ag1WZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="107053" stop="110389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107353" g_stop="107425" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107426" i_stop="109941" i_length="2516">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109942" g_stop="110087" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="219" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110088" i_stop="110275" i_length="188">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110281" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="225" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-E258019" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107353" e_stop="107425"/>
          <exon e_start="109942" e_stop="110087"/>
          <exon e_start="110276" e_stop="110281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGGGTATGTATTTTTGTTTATTAATACTTAGCAAACATTTTCATATTTACTTCTAGATTTCTAATCACATCATGGTTTAAATGGTTATTTAATTTGTCTTCTATAATATCTACTCAAGTTACTTATAGATGTAACAAAAAATAGTTTTCTGGAAGATCATGTGGTAAAATTTTATCTGTCTTCCTATGTTCAATGAGAATCTCCTAAACCTTTTGGAGTGACTATCATTTTCTTGAATTTAACTTAGGTTTGATAGATGCAACAGTTTTATGATAACAAGGCATTAGAAATATTTGATTGTAAAAGTAGGCATGATATTTTTTCTCTGAATTGTTGGCTTGTCAATTTTTTTTGACTTTGTAACTATGAAAAGTCTAGAGAGAAAATTTGAAGAAAGGATCAAGCTAGTTAATAATTTGCTGCTTCAAGGACCCAAAAATTACTTAATTGTTAAATTTTGATGAACATTAGAGTCATATGTTGTATGATGAATATTCAAACTAATAAAGTACACCATTTCCATGAAAAAAAGTGATTCCCTCCTTTTGTTCCTCCATTTCATAATAATGTATAGATATTGTTTACACTTATAAGCACTAGATCCAAAAAAGTATTTTTTACCGAACTAAGGACTATCATTAGGAATAAAAAGTTGTGTCTTTATGTGAATGATCATGTACAATTCTGTAGATCTTTTGACAGGGATTATATGAAATTCTCGAGTGGCATTTTGTAGTTTGAAATCAGGAATATATGTACTTGCATGCAAACTCTTTATACCTAGTTTCTCATTTCTTGAGGAGACCAAAGGGCTGCAGCTTCTTGTTGAATTATAAATGTGTAGTAAAATAATGTTGATGATTTTATGAACAATCATGAATGATAAATTGTAACAATCATATCATGTTCATCCTTAAAATTTGCAGACAGGTCTTTAATATACTCCATATATATTGAAAAGAATTTGAGAGGAGATATCTCTAGTATTTATGGAATTGTGAAATAAATGAAAGAGAGTAATAGAAAACTTAAAACCATCAAGAGACACATCGATCACCAGTCAAACCCATGCTTGAATTTTATGCCAGAGGCTGGTATTCTCACTGAAATCCCATTTTGTTTACCAAATGAAGAAGATATGATCTTTCAACTCAATATAATGGTACCAAATTGAGCTTTTTGAAGACTTCATAAACGTAAGCTTAAAATCTAATAAATAAACAATTATAGGGGAAGGGGGGAAAGTTGAAAGCCTTAGAATTAAGAACGCATATTATAACTTTGCCTTTTAGTCATTCAATTTTTAAGTTATAACTTTGTCGCTTTCCACTTTTAGAATATTATAGATATAGATAGATGTGTGATGGTGAAGGTTTAGCAACTTTGATGGATCTTTGTGTGAAGTAACCACATTCTATCTTTCTCCTCTGCCATTGGTGGATTGAGACTAATGGAGAATATTATCTATAAAATGTAAAGAAGCTTGAAGAATGAATGTCTAACCATTGAATCACACTGTTTGATTTCTTTGGTAAGTTATGAATAAGATTGCTTATAGCTTATCTACAAGGTCAAGTGGATAACATTTATCTAAACACTCTTTGAGGATGATATCCTCTTTTTGTAATGGTCCAATTGAATAATATATGCGGGATGTCGCCAGAGAGAGAAATCAATGCATATCATATTAGTGAGTAGATCTTAAAAGCATCACTGGATTACTTCATATCAGCTTCCAAAAGATGTGAAATTTTATGCGATAAATTCATTTTTCATGCATTTATCACATTTTGCAAAATACTATAATATTTAAAGCTGGCAGCAATTCCATGGAGAAGCTATTTGGAGATTGGATGATTTTAATATTTTTCTTGATAGTTCTTTTGCGGTGGTGGTAGTTGGGGACAGATTTAGATTGGTTTTACCGTGGAGGTAAAAAATTGAGATTTGTATTATCTAATCACTAATAGGAATTGAGAATTTGTCTGACATTAAATTACAGTAGTGAAGTGGGGAAAGCTTCAAGGGATTAACAATGTTAAATTTTTTGGAAAAAACTGAGGTTGAGACTTCTGCACATGGGATGTAAATTAAACCCATATCCAGTCTCAATCTCAGATAGACAACTGAAGCAGTCAATATGGTTTTGCAAGCAATCTTTATTTAGCGTTTGGCTTGTTCAGTATTTGATCATGGAGGGTGGGTTGGACAGTAATTAGGCTCAGTTTGACGTGTAACTTTTCTCATGGATAGCACCGTATTACTTATAATCATATTTTTGTGTTTCTCCTCCTTTTTTTTAAAAAAAAATAAATAAATATTGCATAGAACTGCAAAATTCATGATTTAAAATGATTTTGAATTTCTCCCTCAAGTCTCTAAACTCTCATTTACAGCAATTTTATTTGGGCCATGAGTTAAACTATCAATTTTGTGATCATTGGCCTTCCATGAAATTTCAGGCTCATTTTGGCCTATGCTTTTATAAATGACTTATATTACTGACATTTGGGCTGCAGATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCTGTAAGTGTGTCATTGTGCTTTCACCCTTTTTCTTTTTCCTTTTTTTTTCTGAAGGAGGTTTAGGGTGGGGGTTGTAGAGAGTGCTGATATTTGGAGAATATGGATGATTAATATCAATTTGTAGGGGTTCCAGTTGTAGAGAAATGATGCATGATTGAATCTTTTATCTTGTTTGGTGTTATTCGCAGATGGGG</genome_strand>
        <mrna_strand>GCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCTAGAAAGTTCGGTCCCTATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCCCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCT............................................................................................................................................................................................ATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>225</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4242" PGL_stop="3710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4242" e_stop="3710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="4242" e_stop="3710" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="3710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCCTCCTTTGAGCCTCCATTAATGGACGTTGAAGAATTCCTTAACCTCTTTGATTTTCACTGGTTTGAATATCAAATTCTCAAACCCAAACGCCCCTTTTCTACAACAACCCCAATTCTTGAAGAAACCCCAAAACTTTCAAAAACTCCAACTTTTATGGTCAGATCTCAAAGTGACCTCTGTTTAAGCTCTAAAGATTACATCTTTGATTCTATTTCCGAGAAATCACAATCCCCATCTCCAAAATCTGTTCTTGAAGCTAAACTTCAGCCAATTCTGTCTGGTAAAGAATACAATGAACTCAAATCTTCCCCTGAAGCAGCTGTTAAAAACAGAGCCAATTGCAAAAGCCGAAAGAAGAAAAGTTATTACGGTAAAAGTTTATCAAAGCTGAAATTGAAAGAGCTAAAAAGGTTTATGGATTCTGGGAATTGATTTTCCAAAGAAAGAATAAGATTCAAATTGGGTTCAAAAATTCCGGAATTGAAAAACTAGGGATGGAAATGAAAGGGTTTTGGTAAAATAAATA</gDNA_template>
            <first_frame> F  F  L  L  *  A  S  I  N  G  R  *  R  I  P  *  P  L  *  F  S  L  V  *  I  S  N  S  Q  T  Q  T  P  L  F  Y  N  N  P  N  S  *  R  N  P  K  T  F  K  N  S  N  F  Y  G  Q  I  S  K  *  P  L  F  K  L  *  R  L  H  L  *  F  Y  F  R  E  I  T  I  P  I  S  K  I  C  S  *  S  *  T  S  A  N  S  V  W  *  R  I  Q  *  T  Q  I  F  P  *  S  S  C  *  K  Q  S  Q  L  Q  K  P  K  E  E  K  L  L  R  *  K  F  I  K  A  E  I  E  R  A  K  K  V  Y  G  F  W  E  L  I  F  Q  R  K  N  K  I  Q  I  G  F  K  N  S  G  I  E  K  L  G  M  E  M  K  G  F  W  *  N  K   </first_frame>
            <second_frame>  F  S  S  F  E  P  P  L  M  D  V  E  E  F  L  N  L  F  D  F  H  W  F  E  Y  Q  I  L  K  P  K  R  P  F  S  T  T  T  P  I  L  E  E  T  P  K  L  S  K  T  P  T  F  M  V  R  S  Q  S  D  L  C  L  S  S  K  D  Y  I  F  D  S  I  S  E  K  S  Q  S  P  S  P  K  S  V  L  E  A  K  L  Q  P  I  L  S  G  K  E  Y  N  E  L  K  S  S  P  E  A  A  V  K  N  R  A  N  C  K  S  R  K  K  K  S  Y  Y  G  K  S  L  S  K  L  K  L  K  E  L  K  R  F  M  D  S  G  N  *  F  S  K  E  R  I  R  F  K  L  G  S  K  I  P  E  L  K  N  *  G  W  K  *  K  G  F  G  K  I  N  </second_frame>
            <third_frame>   F  P  P  L  S  L  H  *  W  T  L  K  N  S  L  T  S  L  I  F  T  G  L  N  I  K  F  S  N  P  N  A  P  F  L  Q  Q  P  Q  F  L  K  K  P  Q  N  F  Q  K  L  Q  L  L  W  S  D  L  K  V  T  S  V  *  A  L  K  I  T  S  L  I  L  F  P  R  N  H  N  P  H  L  Q  N  L  F  L  K  L  N  F  S  Q  F  C  L  V  K  N  T  M  N  S  N  L  P  L  K  Q  L  L  K  T  E  P  I  A  K  A  E  R  R  K  V  I  T  V  K  V  Y  Q  S  *  N  *  K  S  *  K  G  L  W  I  L  G  I  D  F  P  K  K  E  *  D  S  N  W  V  Q  K  F  R  N  *  K  T  R  D  G  N  E  R  V  L  V  K  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4241" stop="3804"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSFEPPLMDVEEFLNLFDFHWFEYQILKPKRPFSTTTPILEETPKLSKTPTFMVRSQSDLCLSSKDYIFDSISEKSQSPSPKSVLEAKLQPILSGKEYNELKSSPEAAVKNRANCKSRKKKSYYGKSLSKLKLKELKRFMDSGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13295" PGL_stop="19051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13295" e_stop="13556"/>
            <exon e_start="14542" e_stop="14670"/>
            <exon e_start="14744" e_stop="14873"/>
            <exon e_start="15400" e_stop="15520"/>
            <exon e_start="16313" e_stop="16394"/>
            <exon e_start="17568" e_stop="17621"/>
            <exon e_start="18000" e_stop="18038"/>
            <exon e_start="18500" e_stop="18599"/>
            <exon e_start="18674" e_stop="19051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.476" e_score="0.963"/>
          <exon-intron don_prob="0.991" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="13295" e_stop="13556" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.476">
            <gDNA_intron_boundary i_start="13557" i_stop="14541" i_length="985"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14542" e_stop="14670" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.963">
            <gDNA_intron_boundary i_start="14671" i_stop="14743" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14744" e_stop="14873" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.919">
            <gDNA_intron_boundary i_start="14874" i_stop="15399" i_length="526"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15400" e_stop="15520" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.954" acc_prob="0.934">
            <gDNA_intron_boundary i_start="15521" i_stop="16312" i_length="792"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16313" e_stop="16394" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.957" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16395" i_stop="17567" i_length="1173"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17568" e_stop="17621" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.882">
            <gDNA_intron_boundary i_start="17622" i_stop="17999" i_length="378"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18000" e_stop="18038" e_length="39"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.973">
            <gDNA_intron_boundary i_start="18039" i_stop="18499" i_length="461"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18500" e_stop="18599" e_length="100"/>
          </exon>
          <intron i_serial="8" don_prob="0.968" acc_prob="0.989">
            <gDNA_intron_boundary i_start="18600" i_stop="18673" i_length="74"/>
          </intron>
          <exon e_serial="9" e_score="0.989">
            <gDNA_exon_boundary e_start="18674" e_stop="19051" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13295" stop="13556"/>
              <exon start="14542" stop="14670"/>
              <exon start="14744" stop="14852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13308" stop="13556"/>
              <exon start="14542" stop="14670"/>
              <exon start="14744" stop="14873"/>
              <exon start="15400" stop="15520"/>
              <exon start="16313" stop="16394"/>
              <exon start="17568" stop="17613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13310" stop="13556"/>
              <exon start="14542" stop="14670"/>
              <exon start="14744" stop="14873"/>
              <exon start="15400" stop="15520"/>
              <exon start="16313" stop="16394"/>
              <exon start="17568" stop="17621"/>
              <exon start="18000" stop="18038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13311" stop="13556"/>
              <exon start="14542" stop="14670"/>
              <exon start="14744" stop="14873"/>
              <exon start="15400" stop="15441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13314" stop="13556"/>
              <exon start="14542" stop="14670"/>
              <exon start="14744" stop="14873"/>
              <exon start="15400" stop="15520"/>
              <exon start="16313" stop="16394"/>
              <exon start="17568" stop="17621"/>
              <exon start="18000" stop="18038"/>
              <exon start="18500" stop="18592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13327" stop="13556"/>
              <exon start="14542" stop="14670"/>
              <exon start="14744" stop="14873"/>
              <exon start="15400" stop="15520"/>
              <exon start="16313" stop="16394"/>
              <exon start="17568" stop="17621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14846" stop="14873"/>
              <exon start="15400" stop="15520"/>
              <exon start="16313" stop="16394"/>
              <exon start="17568" stop="17621"/>
              <exon start="18000" stop="18038"/>
              <exon start="18500" stop="18578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15482" stop="15520"/>
              <exon start="16313" stop="16394"/>
              <exon start="17568" stop="17621"/>
              <exon start="18000" stop="18038"/>
              <exon start="18500" stop="18599"/>
              <exon start="18674" stop="19051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18008" stop="18038"/>
              <exon start="18500" stop="18599"/>
              <exon start="18674" stop="19019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATCATTATTGGTCAGTCTTGATTTTCTGTAAAAAAATGGCTCAATGGTTGTCACCTGTTGTACAGATTCACTAAAATTACGGACCACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTG : CTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAG : ATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTGTTGACGAGTTTAGCTGCATAG : GCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGATTGAGGAAGACTTTGGAAGAGCTAGAGTTTACGATCAATGTGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTG : CCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAAC : GTTGCCTTGATGCTATCAGGAATGGGCAGTGGAGCCATGGATGTATTCAGAATG : GCGAGCACGCGGTGGGAAAAACGACAATCTAAAGTTCTG : GAACAAGCTAAAGTCAGAATGATGAAGAAGAAAAATTCTGAGAAAACTGAATCATACTGGGATAACCTATGGGGCGATCGTAAAGACTACACAAAGACAG : AGGAGGAAGTGGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACTCAAGGAGAGGTGCTGACAAACCTCCTACCTTTAAACTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGACTTTGCAGTGCACGGTACATGCATCTCACCTTTGTAAAATATGGTACATTTAGATATAGTATATTCATGATAGTCATGGTTCCTCCCCATATCGATGTAATTATATAGCTAAAATTGACCTCGGGTACATCTATCTGTATGTAAGATCATTCATAATTCAATAAAAGTTGTATGGAGAAAACAATTATTCAACCTGTGTATTCGTCGTTTGATATTCATGATTGATGGTTCT</gDNA_template>
            <first_frame> L  I  I  I  G  Q  S  *  F  S  V  K  K  W  L  N  G  C  H  L  L  Y  R  F  T  K  I  T  D  H  S  S  V  F  L  Y  K  K  *  S  S  N  F  G  *  *  F  *  L  N  G  C  F  W  K  E  E  R  R  I  R  E  D  *  S  C  L  S  R  F  C  C  C  I  *  G  N  C  *  *  F  L  C  C  F  G  F   : A  S  *  C  Y  T  C  S  N  K  E  G  I  L  *  L  H  E  S  L  P  S  R  F  E  W  *  *  S  R  D  H  K  F  L  H  V  Y  Q  *  G  L  *   : D  S  *  *  S  S  A  K  E  S  L  *  *  D  P  W  V  H  S  H  S  N  *  P  F  P  E  R  F  I  A  E  R  S  C  I  C  *  R  V  *  L  H  R :   L  Q  K  L  C  Q  C  L  L  K  S  V  W  D  *  G  R  L  W  K  S  *  S  L  R  S  M  W  T  P  *  F  N  S  T  S  Y  R  *  L  :  P  S  G  L  H  T  L  D  F  C  C  T  A  V  F  A  *  G  *  N  A  K  N  R  K  S  K   : R  C  L  D  A  I  R  N  G  Q  W  S  H  G  C  I  Q  N   : G  E  H  A  V  G  K  T  T  I  *  S  S   : G  T  S  *  S  Q  N  D  E  E  E  K  F  *  E  N  *  I  I  L  G  *  P  M  G  R  S  *  R  L  H  K  D  R :   G  G  S  G  R  *  I  K  T  S  C  S  S  C  S  Q  M  E  R  V  L  K  E  R  C  *  Q  T  S  Y  L  *  T  S  R  G  H  L  *  *  Q  L  T  Y  T  S  *  P  T  L  Q  C  T  V  H  A  S  H  L  C  K  I  W  Y  I  *  I  *  Y  I  H  D  S  H  G  S  S  P  Y  R  C  N  Y  I  A  K  I  D  L  G  Y  I  Y  L  Y  V  R  S  F  I  I  Q  *  K  L  Y  G  E  N  N  Y  S  T  C  V  F  V  V  *  Y  S  *  L  M  V   </first_frame>
            <second_frame>  *  S  L  L  V  S  L  D  F  L  *  K  N  G  S  M  V  V  T  C  C  T  D  S  L  K  L  R  T  T  V  Q  C  F  Y  T  R  S  K  V  P  I  L  G  N  N  F  S  S  M  G  V  F  G  K  K  R  G  G  L  G  R  I  K  V  A  Y  Q  D  S  A  A  A  S  E  E  I  A  D  D  F  Y  A  V  L  G  L  :  L  P  D  A  T  P  A  Q  I  K  K  A  Y  Y  S  C  M  K  A  C  H  P  D  L  S  G  D  D  P  E  T  T  N  F  C  M  F  I  N  E  V  Y  E  :  I  L  S  D  P  V  Q  R  R  V  Y  D  E  I  H  G  Y  T  A  T  A  I  N  P  F  L  S  D  S  S  P  K  D  H  V  F  V  D  E  F  S  C  I   : G  C  K  N  C  A  N  V  C  S  K  V  F  G  I  E  E  D  F  G  R  A  R  V  Y  D  Q  C  G  H  P  D  L  I  Q  Q  A  I  D  S  C :   P  V  D  C  I  H  W  T  S  A  A  Q  L  S  L  L  E  D  E  M  R  R  I  E  R  V  N  :  V  A  L  M  L  S  G  M  G  S  G  A  M  D  V  F  R  M  :  A  S  T  R  W  E  K  R  Q  S  K  V  L  :  E  Q  A  K  V  R  M  M  K  K  K  N  S  E  K  T  E  S  Y  W  D  N  L  W  G  D  R  K  D  Y  T  K  T   : E  E  E  V  E  D  R  S  K  R  A  A  A  A  A  R  K  W  R  E  Y  S  R  R  G  A  D  K  P  P  T  F  K  L  P  E  A  I  S  N  D  N  *  H  I  L  P  N  R  L  C  S  A  R  Y  M  H  L  T  F  V  K  Y  G  T  F  R  Y  S  I  F  M  I  V  M  V  P  P  H  I  D  V  I  I  *  L  K  L  T  S  G  T  S  I  C  M  *  D  H  S  *  F  N  K  S  C  M  E  K  T  I  I  Q  P  V  Y  S  S  F  D  I  H  D  *  W  F  </second_frame>
            <third_frame>   D  H  Y  W  S  V  L  I  F  C  K  K  M  A  Q  W  L  S  P  V  V  Q  I  H  *  N  Y  G  P  Q  F  S  V  S  I  Q  E  V  K  F  Q  F  W  V  I  I  L  A  Q  W  V  F  L  E  R  R  E  E  D  *  G  G  L  K  L  L  I  K  I  L  L  L  H  L  R  K  L  L  M  I  F  M  L  F  W  V  C :   F  L  M  L  H  L  L  K  *  R  R  H  T  I  V  A  *  K  L  A  I  Q  I  *  V  V  M  I  P  R  P  Q  I  F  A  C  L  S  M  R  S  M  R :   F  L  V  I  Q  C  K  G  E  F  M  M  R  S  M  G  T  Q  P  Q  Q  L  T  L  S  *  A  I  H  R  R  K  I  M  Y  L  L  T  S  L  A  A  *  :  A  A  K  I  V  P  M  F  A  Q  K  C  L  G  L  R  K  T  L  E  E  L  E  F  T  I  N  V  D  T  L  I  *  F  N  K  L  *  I  A   : A  Q  W  I  A  Y  I  G  L  L  L  H  S  C  L  C  L  R  M  K  C  E  E  *  K  E  *  T :   L  P  *  C  Y  Q  E  W  A  V  E  P  W  M  Y  S  E  W :   R  A  R  G  G  K  N  D  N  L  K  F  W :   N  K  L  K  S  E  *  *  R  R  K  I  L  R  K  L  N  H  T  G  I  T  Y  G  A  I  V  K  T  T  Q  R  Q  :  R  R  K  W  K  I  D  Q  N  E  L  Q  Q  L  L  A  N  G  E  S  T  Q  G  E  V  L  T  N  L  L  P  L  N  F  P  R  P  S  L  M  T  I  D  I  Y  F  L  T  D  F  A  V  H  G  T  C  I  S  P  L  *  N  M  V  H  L  D  I  V  Y  S  *  *  S  W  F  L  P  I  S  M  *  L  Y  S  *  N  *  P  R  V  H  L  S  V  C  K  I  I  H  N  S  I  K  V  V  W  R  K  Q  L  F  N  L  C  I  R  R  L  I  F  M  I  D  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13329" stop="13556"/>
                    <exon start="14542" stop="14670"/>
                    <exon start="14744" stop="14873"/>
                    <exon start="15400" stop="15520"/>
                    <exon start="16313" stop="16394"/>
                    <exon start="17568" stop="17621"/>
                    <exon start="18000" stop="18038"/>
                    <exon start="18500" stop="18599"/>
                    <exon start="18674" stop="18801"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNGSMVVTCCTDSLKLRTTVQCFYTRSKVPILGNNFSSMGVFGKKRGGLGRIKVAYQDSAAASEEIADDFYAVLGLLPDATPAQIKKAYYSCMKACHPDLSGDDPETTNFCMFINEVYEILSDPVQRRVYDEIHGYTATAINPFLSDSSPKDHVFVDEFSCIGCKNCANVCSKVFGIEEDFGRARVYDQCGHPDLIQQAIDSCPVDCIHWTSAAQLSLLEDEMRRIERVNVALMLSGMGSGAMDVFRMASTRWEKRQSKVLEQAKVRMMKKKNSEKTESYWDNLWGDRKDYTKTEEEVEDRSKRAAAAARKWREYSRRGADKPPTFKLPEAISNDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="20248" PGL_stop="20523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20248" e_stop="20523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="20248" e_stop="20523" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20248" stop="20523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCAATCTAGTAAATAAAAAGCTTTCTATGATTAATTGGAAAAAATTTAGCCAAAACAAATATTTACAGTTAGATCAATAAAAGAAAAGGTAATCCCATTTCATCTTCTTGAAGATATTTCTTGGTTTCAAACTCGGAGTTCGATGCTCGTACTGGGGTTCTAATTAAATTCAAATGGCGCTGAGGGCAATACTCAACCAAAACTTTTTTTCGTATCCAGGACTCGAACCCGAGTTACTATCTAACAGTAGAAGCAACAGTATGAGCCCAAAAC</gDNA_template>
            <first_frame> K  S  I  *  *  I  K  S  F  L  *  L  I  G  K  N  L  A  K  T  N  I  Y  S  *  I  N  K  R  K  G  N  P  I  S  S  S  *  R  Y  F  L  V  S  N  S  E  F  D  A  R  T  G  V  L  I  K  F  K  W  R  *  G  Q  Y  S  T  K  T  F  F  R  I  Q  D  S  N  P  S  Y  Y  L  T  V  E  A  T  V  *  A  Q  N </first_frame>
            <second_frame>  N  Q  S  S  K  *  K  A  F  Y  D  *  L  E  K  I  *  P  K  Q  I  F  T  V  R  S  I  K  E  K  V  I  P  F  H  L  L  E  D  I  S  W  F  Q  T  R  S  S  M  L  V  L  G  F  *  L  N  S  N  G  A  E  G  N  T  Q  P  K  L  F  F  V  S  R  T  R  T  R  V  T  I  *  Q  *  K  Q  Q  Y  E  P  K   </second_frame>
            <third_frame>   I  N  L  V  N  K  K  L  S  M  I  N  W  K  K  F  S  Q  N  K  Y  L  Q  L  D  Q  *  K  K  R  *  S  H  F  I  F  L  K  I  F  L  G  F  K  L  G  V  R  C  S  Y  W  G  S  N  *  I  Q  M  A  L  R  A  I  L  N  Q  N  F  F  S  Y  P  G  L  E  P  E  L  L  S  N  S  R  S  N  S  M  S  P  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0075L20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="29929" PGL_stop="35311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29929" e_stop="30249"/>
            <exon e_start="34424" e_stop="35311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29929" e_stop="30249" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30250" i_stop="34423" i_length="4174"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="34424" e_stop="35311" e_length="888"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29929" stop="30249"/>
              <exon start="34424" stop="34587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29929" stop="30249"/>
              <exon start="34424" stop="34570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29934" stop="30249"/>
              <exon start="34424" stop="34746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29934" stop="30249"/>
              <exon start="34424" stop="34655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29934" stop="30249"/>
              <exon start="34424" stop="34569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29936" stop="30249"/>
              <exon start="34424" stop="34866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29944" stop="30249"/>
              <exon start="34424" stop="34675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30004" stop="30249"/>
              <exon start="34424" stop="35182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30081" stop="30249"/>
              <exon start="34424" stop="34749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34453" stop="35117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34522" stop="35026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34522" stop="34866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34554" stop="35203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376733" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34776" stop="35311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306882" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG : GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAAGTGTATTTCCTGAGCTGAGTAGCAATGTTTGTTGTTCATGATATGTGTAGTTTGATAAATTAAAGTAGAACATGGCAAGGTGTGCCCAGAGTTGATTTAAGTGGATGA</gDNA_template>
            <first_frame> Y  F  F  L  L  Q  N  *  I  F  S  V  N  F  Y  Y  L  V  N  Q  E  V  K  L  Q  S  K  S  R  Y  S  F  E  D  G  R  L  Q  R  *  *  *  V  *  L  P  F  Q  A  C  V  D  R  *  F  R  C  G  *  I  *  S  A  F  Q  V  H  Q  K  *  I  Q  F  G  V  *  I  N  Y  W  G  *  I  C  N  Q  K  S  *  Y  *  W  *  S  Y  *  S  S  D  L  G  Y  C  W  S  R  K  :  V  S  C  H  Y  E  C  L  L  S  G  S  C  R  C  F  A  R  I  *  C  Y  S  T  C  Y  L  *  K  R  Q  Q  V  V  E  G  I  E  R  P  Y  *  P  *  H  C  S  H  A  P  R  Q  Q  I  R  S  P  T  S  R  G  C  F  N  *  R  G  *  I  F  G  R  E  G  S  P  I  L  H  G  N  F  C  I  R  S  D  Q  R  *  K  C  V  Y  *  S  S  H  A  D  I  P  D  R  Q  *  E  S  S  R  G  R  G  R  R  C  Y  F  N  R  T  T  *  R  T  D  D  *  Y  Q  R  *  R  I  C  L  E  K  V  W  V  L  F  E  L  G  L  T  *  D  N  S  S  S  F  I  Y  Q  L  *  I  V  I  K  S  M  I  S  S  P  C  F  L  S  L  W  V  S  R  L  W  D  I  R  F  I  L  *  S  *  E  Y  V  K  Q  R  V  L  M  K  N  S  E  G  G  S  G  T  A  S  F  *  L  Q  N  V  *  T  R  S  *  F  Y  V  F  W  L  M  A  *  K  T  G  D  I  F  A  I  T  C  Y  R  I  S  S  Y  L  S  R  I  Y  V  L  I  I  F  P  L  L  K  V  Y  F  L  S  *  V  A  M  F  V  V  H  D  M  C  S  L  I  N  *  S  R  T  W  Q  G  V  P  R  V  D  L  S  G  * </first_frame>
            <second_frame>  I  F  F  F  F  K  I  E  S  F  Q  *  T  F  T  I  W  S  I  K  K  *  N  Y  R  A  K  A  D  I  V  L  K  M  A  G  Y  R  G  D  D  E  Y  D  Y  L  F  K  L  V  L  I  G  D  S  G  V  G  K  S  N  L  L  S  R  F  T  K  N  E  F  N  L  E  S  K  S  T  I  G  V  E  F  A  T  K  S  L  N  I  D  G  K  V  I  K  A  Q  I  W  D  T  A  G  Q  E  R :   Y  R  A  I  T  S  A  Y  Y  R  G  A  V  G  A  L  L  V  Y  D  V  T  R  H  V  T  F  E  N  V  N  R  W  L  K  E  L  R  D  H  T  D  P  N  I  V  V  M  L  L  G  N  K  S  D  L  R  H  L  V  A  V  S  T  E  E  A  K  S  L  A  E  R  E  A  L  Y  F  M  E  T  S  A  L  E  A  T  N  V  E  N  A  F  T  E  A  L  T  Q  I  Y  R  I  V  S  K  K  A  V  E  A  G  D  E  G  A  T  S  T  A  P  P  K  G  Q  T  I  N  I  K  D  E  G  S  A  W  K  K  F  G  C  C  S  S  *  G  S  R  K  T  I  A  Q  A  L  Y  I  S  C  K  L  S  L  N  Q  *  F  P  L  P  V  F  S  H  F  G  Y  R  D  C  G  I  *  D  L  F  Y  S  H  E  N  T  *  S  S  A  F  S  *  K  I  P  K  E  D  Q  V  L  L  V  S  N  Y  R  M  S  K  Q  G  L  S  F  M  F  S  G  *  W  L  E  K  L  E  I  S  L  Q  *  P  V  T  E  Y  L  L  I  C  L  E  F  T  S  *  L  F  F  P  F  *  K  C  I  S  *  A  E  *  Q  C  L  L  F  M  I  C  V  V  *  *  I  K  V  E  H  G  K  V  C  P  E  L  I  *  V  D   </second_frame>
            <third_frame>   F  F  S  S  S  K  L  N  L  F  S  E  L  L  L  F  G  Q  S  R  S  E  I  T  E  Q  K  Q  I  *  F  *  R  W  Q  V  T  E  V  M  M  S  M  I  T  F  S  S  L  C  *  *  V  I  Q  V  W  V  N  L  I  C  F  P  G  S  P  K  M  N  S  I  W  S  L  N  Q  L  L  G  L  N  L  Q  P  K  V  L  I  L  M  V  K  L  L  K  L  R  F  G  I  L  L  V  K  K   : G  I  V  P  L  R  V  L  I  I  G  E  L  S  V  L  C  S  Y  M  M  L  L  D  M  L  P  L  K  T  S  T  G  G  *  R  N  *  E  T  I  L  T  L  T  L  *  S  C  S  *  A  T  N  Q  I  S  D  I  S  W  L  F  Q  L  K  R  L  N  L  W  Q  R  G  K  P  Y  T  S  W  K  L  L  H  *  K  R  P  T  L  K  M  R  L  L  K  L  S  R  R  Y  T  G  S  S  V  R  K  Q  S  R  Q  G  T  K  V  L  L  Q  P  H  H  L  K  D  R  R  L  I  S  K  M  K  D  L  L  G  K  S  L  G  A  V  R  A  R  A  H  V  R  Q  *  L  K  L  Y  I  S  V  V  N  C  H  *  I  N  D  F  L  S  L  F  S  L  T  L  G  I  A  I  V  G  Y  K  I  Y  S  I  V  M  R  I  R  E  A  A  R  S  H  E  K  F  R  R  R  I  R  Y  C  *  F  L  I  T  E  C  L  N  K  V  L  V  L  C  F  L  V  D  G  L  K  N  W  R  Y  L  C  N  N  L  L  P  N  I  F  L  F  V  S  N  L  R  L  N  Y  F  S  P  S  K  S  V  F  P  E  L  S  S  N  V  C  C  S  *  Y  V  *  F  D  K  L  K  *  N  M  A  R  C  A  Q  S  *  F  K  W  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29996" stop="30249"/>
                    <exon start="34424" stop="34859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYRAKADIVLKMAGYRGDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVNRWLKELRDHTDPNIVVMLLGNKSDLRHLVAVSTEEAKSLAEREALYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSTAPPKGQTINIKDEGSAWKKFGCCSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34346" e_stop="35311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34346" e_stop="35311" e_length="966"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34346" stop="35131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544321" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34453" stop="35117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34522" stop="35026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34522" stop="34866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34554" stop="35203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376733" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34776" stop="35311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306882" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAAGTGTATTTCCTGAGCTGAGTAGCAATGTTTGTTGTTCATGATATGTGTAGTTTGATAAATTAAAGTAGAACATGGCAAGGTGTGCCCAGAGTTGATTTAAGTGGATGA</gDNA_template>
            <first_frame> E  R  E  C  I  G  M  H  P  C  S  F  K  L  L  Y  Y  C  F  S  F  S  S  S  Y  Q  V  S  C  H  Y  E  C  L  L  S  G  S  C  R  C  F  A  R  I  *  C  Y  S  T  C  Y  L  *  K  R  Q  Q  V  V  E  G  I  E  R  P  Y  *  P  *  H  C  S  H  A  P  R  Q  Q  I  R  S  P  T  S  R  G  C  F  N  *  R  G  *  I  F  G  R  E  G  S  P  I  L  H  G  N  F  C  I  R  S  D  Q  R  *  K  C  V  Y  *  S  S  H  A  D  I  P  D  R  Q  *  E  S  S  R  G  R  G  R  R  C  Y  F  N  R  T  T  *  R  T  D  D  *  Y  Q  R  *  R  I  C  L  E  K  V  W  V  L  F  E  L  G  L  T  *  D  N  S  S  S  F  I  Y  Q  L  *  I  V  I  K  S  M  I  S  S  P  C  F  L  S  L  W  V  S  R  L  W  D  I  R  F  I  L  *  S  *  E  Y  V  K  Q  R  V  L  M  K  N  S  E  G  G  S  G  T  A  S  F  *  L  Q  N  V  *  T  R  S  *  F  Y  V  F  W  L  M  A  *  K  T  G  D  I  F  A  I  T  C  Y  R  I  S  S  Y  L  S  R  I  Y  V  L  I  I  F  P  L  L  K  V  Y  F  L  S  *  V  A  M  F  V  V  H  D  M  C  S  L  I  N  *  S  R  T  W  Q  G  V  P  R  V  D  L  S  G  * </first_frame>
            <second_frame>  K  G  N  V  L  G  C  I  L  V  P  L  S  C  C  T  I  A  S  V  F  L  L  H  T  R  Y  R  A  I  T  S  A  Y  Y  R  G  A  V  G  A  L  L  V  Y  D  V  T  R  H  V  T  F  E  N  V  N  R  W  L  K  E  L  R  D  H  T  D  P  N  I  V  V  M  L  L  G  N  K  S  D  L  R  H  L  V  A  V  S  T  E  E  A  K  S  L  A  E  R  E  A  L  Y  F  M  E  T  S  A  L  E  A  T  N  V  E  N  A  F  T  E  A  L  T  Q  I  Y  R  I  V  S  K  K  A  V  E  A  G  D  E  G  A  T  S  T  A  P  P  K  G  Q  T  I  N  I  K  D  E  G  S  A  W  K  K  F  G  C  C  S  S  *  G  S  R  K  T  I  A  Q  A  L  Y  I  S  C  K  L  S  L  N  Q  *  F  P  L  P  V  F  S  H  F  G  Y  R  D  C  G  I  *  D  L  F  Y  S  H  E  N  T  *  S  S  A  F  S  *  K  I  P  K  E  D  Q  V  L  L  V  S  N  Y  R  M  S  K  Q  G  L  S  F  M  F  S  G  *  W  L  E  K  L  E  I  S  L  Q  *  P  V  T  E  Y  L  L  I  C  L  E  F  T  S  *  L  F  F  P  F  *  K  C  I  S  *  A  E  *  Q  C  L  L  F  M  I  C  V  V  *  *  I  K  V  E  H  G  K  V  C  P  E  L  I  *  V  D   </second_frame>
            <third_frame>   K  G  M  Y  W  D  A  S  L  F  L  *  V  V  V  L  L  L  Q  F  F  F  F  I  P  G  I  V  P  L  R  V  L  I  I  G  E  L  S  V  L  C  S  Y  M  M  L  L  D  M  L  P  L  K  T  S  T  G  G  *  R  N  *  E  T  I  L  T  L  T  L  *  S  C  S  *  A  T  N  Q  I  S  D  I  S  W  L  F  Q  L  K  R  L  N  L  W  Q  R  G  K  P  Y  T  S  W  K  L  L  H  *  K  R  P  T  L  K  M  R  L  L  K  L  S  R  R  Y  T  G  S  S  V  R  K  Q  S  R  Q  G  T  K  V  L  L  Q  P  H  H  L  K  D  R  R  L  I  S  K  M  K  D  L  L  G  K  S  L  G  A  V  R  A  R  A  H  V  R  Q  *  L  K  L  Y  I  S  V  V  N  C  H  *  I  N  D  F  L  S  L  F  S  L  T  L  G  I  A  I  V  G  Y  K  I  Y  S  I  V  M  R  I  R  E  A  A  R  S  H  E  K  F  R  R  R  I  R  Y  C  *  F  L  I  T  E  C  L  N  K  V  L  V  L  C  F  L  V  D  G  L  K  N  W  R  Y  L  C  N  N  L  L  P  N  I  F  L  F  V  S  N  L  R  L  N  Y  F  S  P  S  K  S  V  F  P  E  L  S  S  N  V  C  C  S  *  Y  V  *  F  D  K  L  K  *  N  M  A  R  C  A  Q  S  *  F  K  W  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34347" stop="34859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGNVLGCILVPLSCCTIASVFLLHTRYRAITSAYYRGAVGALLVYDVTRHVTFENVNRWLKELRDHTDPNIVVMLLGNKSDLRHLVAVSTEEAKSLAEREALYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSTAPPKGQTINIKDEGSAWKKFGCCSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32268" e_stop="33056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="32268" e_stop="33056" e_length="789"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32268" stop="33056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32269" stop="32711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCT</gDNA_template>
            <first_frame> V  M  I  I  R  H  I  K  H  V  N  K  K  E  *  R  S  I  C  E  N  S  N  Y  K  L  S  S  K  L  N  C  H  F  E  I  *  M  F  Y  M  D  S  S  L  I  I  I  I  N  I  R  V  *  V  I  V  M  W  A  W  L  L  H  V  D  T  L  K  I  S  E  K  S  I  S  T  H  T  R  Y  V  C  T  S  *  E  *  *  I  F  G  L  V  R  H  K  L  N  Q  D  A  P  K  A  *  L  E  W  Q  K  V  E  D  L  *  L  R  S  Q  V  Q  A  H  T  M  Q  S  E  A  W  Y  L  S  G  E  G  *  R  G  G  P  I  I  H  R  V  *  K  V  V  I  G  P  K  G  S  G  S  R  I  N  K  *  L  E  V  I  F  V  C  D  T  T  *  S  T  D  K  K  N  *  D  T  T  *  G  N  I  R  T  S  V  G  F  F  S  K  G  G  F  Q  A  I  L  S  H  L  L  R  S  K  S  T  S  I  V  I  R  *  L  S  I  K  A  *  T  N  G  K  M  S  P  Y  I  F  C  L  C  *  D  L  I  P  E  I  P  W  F  *  S  I  S  L  T  L  P  W  L  F  I  T  S </first_frame>
            <second_frame>  *  *  L  *  D  I  *  N  M  L  I  K  R  S  R  E  V  Y  A  K  I  Q  T  T  N  L  V  P  N  *  T  V  I  L  K  Y  R  C  F  T  W  I  L  H  *  S  L  S  S  I  Y  V  F  E  *  L  *  C  G  H  G  Y  F  M  *  I  H  S  K  L  A  K  S  L  *  V  H  I  L  D  T  Y  A  H  H  R  N  N  K  S  L  D  *  L  G  I  N  *  T  K  M  P  P  R  P  S  S  S  G  K  R  W  R  I  C  D  L  G  R  R  F  K  P  T  P  C  K  A  K  P  G  I  *  V  G  K  G  R  G  V  D  P  L  S  T  E  F  R  R  L  *  L  V  Q  R  A  V  G  H  G  *  I  N  N  W  K  S  Y  L  Y  V  I  Q  L  K  V  L  T  K  R  I  E  I  Q  L  K  V  T  F  E  L  L  *  D  F  L  V  K  V  V  F  R  P  F  *  A  T  C  Y  V  L  N  P  P  V  *  L  S  G  N  C  L  S  K  L  R  Q  M  G  R  C  H  P  T  F  F  A  Y  A  R  T  *  S  Q  K  S  H  G  F  N  L  F  H  *  H  Y  P  G  F  L  *  L   </second_frame>
            <third_frame>   D  D  Y  K  T  Y  K  T  C  *  *  K  G  V  E  K  Y  M  R  K  F  K  L  Q  T  *  F  Q  T  K  L  S  F  *  N  I  D  V  L  H  G  F  F  I  N  H  Y  H  Q  Y  T  C  L  S  D  C  D  V  G  M  V  T  S  C  R  Y  T  Q  N  *  R  K  V  Y  K  Y  T  Y  *  I  R  M  H  I  I  G  I  I  N  L  W  I  S  *  A  *  T  K  P  R  C  P  Q  G  L  A  R  V  A  K  G  G  G  F  V  T  *  V  A  G  S  S  P  H  H  A  K  R  S  L  V  F  K  W  G  R  V  E  G  W  T  H  Y  P  P  S  L  E  G  C  D  W  S  K  G  Q  W  V  T  D  K  *  I  I  G  S  H  I  C  M  *  Y  N  L  K  Y  *  Q  K  E  L  R  Y  N  L  R  *  H  S  N  F  C  R  I  F  *  *  R  W  F  S  G  H  F  E  P  P  V  T  F  *  I  H  Q  Y  S  Y  P  V  T  V  Y  Q  S  L  D  K  W  E  D  V  T  L  H  F  L  P  M  L  G  L  D  P  R  N  P  M  V  L  I  Y  F  I  D  T  T  L  A  F  Y  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0075L20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="30602" e_stop="30617"/>
            <exon e_start="30965" e_stop="31570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.879" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.625">
            <gDNA_exon_boundary e_start="30602" e_stop="30617" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.879" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30618" i_stop="30964" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="30965" e_stop="31570" e_length="606"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30602" stop="30617"/>
              <exon start="30965" stop="31570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317989" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGACCATTGGCTCAA : TATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTG</gDNA_template>
            <first_frame> R  T  I  G  S   : I  L  S  G  C  F  L  C  V  W  D  L  D  E  *  E  V  L  V  G  L  L  V  *  S  Y  F  W  *  G  S  S  N  D  V  V  F  I  G  I  F  *  E  C  L  D  V  L  L  L  L  D  W  D  F  L  S  L  G  V  V  S  V  F  L  I  E  I  R  G  T  W  S  A  Y  C  N  Q  L  Y  I  K  K  K  E  E  Y  F  S  V  F  G  S  *  K  R  I  S  *  E  H  F  E  D  V  M  K  *  I  K  V  C  C  P  N  G  L  L  D  E  M  I  I  Q  F  N  I  C  A  G  Y  V  C  S  *  L  F  R  C  Y  C  D  V  N  L  K  A  N  Y  R  N  C  S  I  Q  I  C  C  F  K  I  I  *  T  Y  S  V  P  A  R  V  H  W  Q  V  C  F  F  *  Y  E  K  *  L  T  K  V  T  Q  Y  F  L  I  I  F  E  I  L  S  Y  F  I  </first_frame>
            <second_frame>  G  P  L  A  Q  :  Y  *  V  V  V  F  C  V  F  G  I  *  M  S  E  K  C  L  W  V  C  W  F  N  L  I  F  G  K  V  L  Q  M  M  L  C  L  L  V  F  S  K  S  V  *  M  C  C  C  C  L  I  G  I  S  C  L  W  V  W  Y  L  C  S  *  L  K  F  E  G  H  G  V  L  T  A  T  N  Y  I  *  K  K  K  K  N  I  F  P  C  L  V  H  E  K  E  Y  R  E  S  I  L  K  T  *  *  S  K  S  K  C  V  A  P  M  D  F  *  M  R  *  S  Y  N  S  T  F  V  Q  A  M  C  A  P  S  C  L  D  A  I  V  M  S  I  *  K  L  I  I  E  I  V  V  S  K  F  V  V  L  K  L  F  E  L  I  Q  F  P  H  E  Y  I  G  R  Y  V  F  S  N  M  K  N  N  *  P  K  *  L  N  I  S  S  *  F  L  K  S  L  A  I  L  L </second_frame>
            <third_frame>   D  H  W  L  N :   I  K  W  L  F  F  V  C  L  G  F  R  *  V  R  S  A  C  G  F  V  G  L  I  L  F  L  V  R  F  F  K  *  C  C  V  Y  W  Y  F  L  R  V  S  R  C  A  V  V  A  *  L  G  F  L  V  F  G  C  G  I  C  V  P  N  *  N  S  R  D  M  E  C  L  L  Q  P  I  I  Y  K  K  K  R  R  I  F  F  R  V  W  F  M  K  K  N  I  V  R  A  F  *  R  R  N  E  V  N  Q  S  V  L  P  Q  W  T  F  R  *  D  D  H  T  I  Q  H  L  C  R  L  C  V  L  L  V  V  *  M  L  L  *  C  Q  S  E  S  *  L  *  K  L  *  Y  P  N  L  L  F  *  N  Y  L  N  L  F  S  S  R  T  S  T  L  A  G  M  F  F  L  I  *  K  I  I  D  Q  S  N  S  I  F  P  H  N  F  *  N  P  *  L  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0075L20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="39817" PGL_stop="35752"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39817" e_stop="39548"/>
            <exon e_start="39333" e_stop="39187"/>
            <exon e_start="36758" e_stop="36044"/>
            <exon e_start="35775" e_stop="35752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.708"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39817" e_stop="39548" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39547" i_stop="39334" i_length="214"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39333" e_stop="39187" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39186" i_stop="36759" i_length="2428"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36758" e_stop="36044" e_length="715"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36043" i_stop="35776" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="0.708">
            <gDNA_exon_boundary e_start="35775" e_stop="35752" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39817" stop="39548"/>
              <exon start="39333" stop="39187"/>
              <exon start="36758" stop="36572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39811" stop="39548"/>
              <exon start="39333" stop="39187"/>
              <exon start="36758" stop="36666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39811" stop="39548"/>
              <exon start="39333" stop="39187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39810" stop="39548"/>
              <exon start="39333" stop="39187"/>
              <exon start="36758" stop="36419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39805" stop="39548"/>
              <exon start="39333" stop="39187"/>
              <exon start="36758" stop="36044"/>
              <exon start="35775" stop="35752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39804" stop="39548"/>
              <exon start="39333" stop="39187"/>
              <exon start="36758" stop="36639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39804" stop="39548"/>
              <exon start="39333" stop="39187"/>
              <exon start="36758" stop="36652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39770" stop="39548"/>
              <exon start="39333" stop="39187"/>
              <exon start="36758" stop="36365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39580" stop="39548"/>
              <exon start="39333" stop="39187"/>
              <exon start="36758" stop="36182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623857" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG : TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG : GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGATCCACGTGGAACGACAGTGACGTGGCGTTAATGTTGCCGATTCGAGAAGAGGATCAGTCGTTGTACGGTGATCTCGGTGAATTACCGGAATGTTCAGTTGTTTTCCGGCGGTACAGTGTGGAAACTCCCTGCTGCGGAGGTACAGGATAACAAATCATTTGTCAATTTTTCACTGAAATTGCCATATTTTTATTTTTTAATTATCTTCCTGACTTTTGGTTCCACGTTCTTCGTGACCCTTTTTTTTAATTTTATTTTTATGTAAAGATCTGGTAGATTAAAAAAAAAAAGAAATATACTTTGATTTGATTTTTACTTGAA : AAAAAAAAAAAAAACTATATTCAA</gDNA_template>
            <first_frame> L  F  I  F  S  H  F  F  F  *  F  L  Y  D  I  K  Q  N  L  V  N  P  Q  K  V  F  I  F  F  L  F  F  F  *  V  I  *  V  I  F  V  F  F  G  H  G  R  *  F  I  Q  K  S  I  F  S  *  T  R  R  F  H  R  N  S  T  G  *  C  C  *  F  L  F  F  R  *  *  S  G  G  S  *  H  A  I  T  *  K  K  :  *  E  R  S  K  K  E  S  N  F  S  A  N  N  *  R  *  W  I  K  K  *  R  G  S  L  S  T  T  R  F  L  V  L  E  K  I  W  T  K  T  N  *  R  I  T  L  S  Q  :  G  I  L  S  M  Q  *  L  Q  R  L  S  R  Q  K  T  S  R  A  *  P  P  G  P  H  H  A  S  H  Y  L  L  L  R  T  Q  S  P  N  P  G  R  R  R  R  Q  T  P  P  S  Q  P  P  Y  Y  H  H  Q  F  T  H  Y  L  Y  R  H  R  R  R  Q  *  C  Y  C  G  C  S  H  G  L  Y  R  S  R  Q  I  I  P  R  R  T  R  S  I  C  L  S  T  R  *  W  I  F  R  A  R  R  *  V  R  L  V  F  R  Y  G  N  N  N  Y  V  Y  G  E  Y  V  V  V  H  G  G  I  H  V  E  R  Q  *  R  G  V  N  V  A  D  S  R  R  G  S  V  V  V  R  *  S  R  *  I  T  G  M  F  S  C  F  P  A  V  Q  C  G  N  S  L  L  R  R  Y  R  I  T  N  H  L  S  I  F  H  *  N  C  H  I  F  I  F  *  L  S  S  *  L  L  V  P  R  S  S  *  P  F  F  L  I  L  F  L  C  K  D  L  V  D  *  K  K  K  E  I  Y  F  D  L  I  F  T  *   : K  K  K  K  K  L  Y  S  </first_frame>
            <second_frame>  F  L  F  S  L  I  F  S  S  N  F  Y  M  I  *  N  K  I  *  L  I  L  K  K  F  L  F  S  F  F  F  F  S  K  L  Y  K  L  F  L  C  F  L  V  M  E  D  S  S  Y  K  N  L  F  F  H  K  Q  E  D  S  T  G  T  P  P  D  N  A  A  D  S  C  F  S  G  D  E  A  A  E  V  S  M  P  S  P  R  K  S :   R  R  G  A  K  K  K  V  I  S  V  P  I  I  E  G  D  G  S  R  S  K  G  E  V  Y  P  P  Q  D  S  W  S  W  R  K  Y  G  Q  K  P  I  K  G  S  P  Y  P  R :   G  Y  Y  R  C  S  S  S  K  G  C  P  A  R  K  Q  V  E  R  S  R  L  D  P  T  M  L  L  I  T  Y  C  S  E  H  N  H  Q  I  P  A  A  A  A  A  K  H  H  H  H  N  H  P  T  T  T  T  S  S  P  T  T  S  T  G  T  A  G  D  N  N  A  T  A  A  V  A  T  D  S  T  V  V  D  K  S  S  P  E  E  P  D  L  F  A  Y  Q  H  D  N  G  F  S  E  L  A  G  E  L  G  W  F  S  D  M  G  T  T  T  T  F  M  E  S  T  S  S  S  M  A  G  S  T  W  N  D  S  D  V  A  L  M  L  P  I  R  E  E  D  Q  S  L  Y  G  D  L  G  E  L  P  E  C  S  V  V  F  R  R  Y  S  V  E  T  P  C  C  G  G  T  G  *  Q  I  I  C  Q  F  F  T  E  I  A  I  F  L  F  F  N  Y  L  P  D  F  W  F  H  V  L  R  D  P  F  F  *  F  Y  F  Y  V  K  I  W  *  I  K  K  K  K  K  Y  T  L  I  *  F  L  L  E  :  K  K  K  K  N  Y  I  Q </second_frame>
            <third_frame>   F  Y  F  L  S  F  F  L  L  I  S  I  *  Y  K  T  K  F  S  *  S  S  K  S  F  Y  F  L  S  F  F  F  L  S  Y  I  S  Y  F  C  V  F  W  S  W  K  I  V  H  T  K  I  Y  F  F  I  N  K  K  I  P  P  E  L  H  R  I  M  L  L  I  L  V  F  P  V  M  K  R  R  K  L  A  C  H  H  L  E  K   : V  G  E  E  Q  K  R  K  *  F  Q  C  Q  *  L  K  V  M  D  Q  E  V  K  G  K  F  I  H  H  K  I  L  G  L  G  E  N  M  D  K  N  Q  L  K  D  H  L  I  P   : G  D  I  I  D  A  V  A  P  K  A  V  P  P  E  N  K  S  S  V  A  A  W  T  P  P  C  F  S  L  P  I  A  P  N  T  I  T  K  S  R  P  P  P  P  P  N  T  T  I  T  T  T  L  L  P  P  P  V  H  P  L  P  L  P  A  P  P  E  T  I  M  L  L  R  L  *  P  R  T  L  P  *  *  T  N  H  P  P  K  N  Q  I  Y  L  L  I  N  T  I  M  D  F  Q  S  S  P  V  S  *  V  G  F  P  I  W  E  Q  Q  L  R  L  W  R  V  R  R  R  P  W  R  D  P  R  G  T  T  V  T  W  R  *  C  C  R  F  E  K  R  I  S  R  C  T  V  I  S  V  N  Y  R  N  V  Q  L  F  S  G  G  T  V  W  K  L  P  A  A  E  V  Q  D  N  K  S  F  V  N  F  S  L  K  L  P  Y  F  Y  F  L  I  I  F  L  T  F  G  S  T  F  F  V  T  L  F  F  N  F  I  F  M  *  R  S  G  R  L  K  K  K  R  N  I  L  *  F  D  F  Y  L  K :   K  K  K  K  T  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39759" stop="39548"/>
                    <exon start="39333" stop="39187"/>
                    <exon start="36758" stop="36215"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILKKFLFSFFFFSKLYKLFLCFLVMEDSSYKNLFFHKQEDSTGTPPDNAADSCFSGDEAAEVSMPSPRKSRRGAKKKVISVPIIEGDGSRSKGEVYPPQDSWSWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRLDPTMLLITYCSEHNHQIPAAAAAKHHHHNHPTTTTSSPTTSTGTAGDNNATAAVATDSTVVDKSSPEEPDLFAYQHDNGFSELAGELGWFSDMGTTTTFMESTSSSMAGSTWNDSDVALMLPIREEDQSLYGDLGELPECSVVFRRYSVETPCCGGTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="44442" PGL_stop="44931"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44442" e_stop="44931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="44442" e_stop="44931" e_length="490"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44442" stop="44931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44442" stop="44924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543569" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44443" stop="44931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAGATCCGCCATTAAACAATTCCTGATCCGATTGAAGCAATCCACGCCGAGCCTCTAAGTTTTGATAATATTTATTATCGAATTGGCTCGGCGTCTGGATATCTAACGGGGCTAAATTACTGTCTCCGCCAGATGCAGGGCATGTGGCCCCGAGTGTGGCGGCGAATTCTGAGTTGATGTTGGTGGCGTTGTTGACGCGGTCGCGGAAACTGGCGCATCGGGCTTGGCCGATTGTGTGGCTGCCGGAGAGGGCGGTCATCTCGGCGGCGTTAAGGCCTTTGGCGGAGAACATGGAGATCAAAGTTGAAAGGGTGGAAGTTGGCATAGGGATTTGGGCGTTGGCGGAGCTTAGGCTTGCGGTTCTTGCGTCTCTTCGGCCCAATTGCACGGTCCATGTTGGCCCTCCTAGCTGCGTAAATACGATGTTATAAATATATATTTAAATTTGTATAAAATTAATTTAATAAAAAAAATATATTTTGTTTGAC</gDNA_template>
            <first_frame> L  R  S  A  I  K  Q  F  L  I  R  L  K  Q  S  T  P  S  L  *  V  L  I  I  F  I  I  E  L  A  R  R  L  D  I  *  R  G  *  I  T  V  S  A  R  C  R  A  C  G  P  E  C  G  G  E  F  *  V  D  V  G  G  V  V  D  A  V  A  E  T  G  A  S  G  L  A  D  C  V  A  A  G  E  G  G  H  L  G  G  V  K  A  F  G  G  E  H  G  D  Q  S  *  K  G  G  S  W  H  R  D  L  G  V  G  G  A  *  A  C  G  S  C  V  S  S  A  Q  L  H  G  P  C  W  P  S  *  L  R  K  Y  D  V  I  N  I  Y  L  N  L  Y  K  I  N  L  I  K  K  I  Y  F  V  *  </first_frame>
            <second_frame>  *  D  P  P  L  N  N  S  *  S  D  *  S  N  P  R  R  A  S  K  F  *  *  Y  L  L  S  N  W  L  G  V  W  I  S  N  G  A  K  L  L  S  P  P  D  A  G  H  V  A  P  S  V  A  A  N  S  E  L  M  L  V  A  L  L  T  R  S  R  K  L  A  H  R  A  W  P  I  V  W  L  P  E  R  A  V  I  S  A  A  L  R  P  L  A  E  N  M  E  I  K  V  E  R  V  E  V  G  I  G  I  W  A  L  A  E  L  R  L  A  V  L  A  S  L  R  P  N  C  T  V  H  V  G  P  P  S  C  V  N  T  M  L  *  I  Y  I  *  I  C  I  K  L  I  *  *  K  K  Y  I  L  F  D </second_frame>
            <third_frame>   E  I  R  H  *  T  I  P  D  P  I  E  A  I  H  A  E  P  L  S  F  D  N  I  Y  Y  R  I  G  S  A  S  G  Y  L  T  G  L  N  Y  C  L  R  Q  M  Q  G  M  W  P  R  V  W  R  R  I  L  S  *  C  W  W  R  C  *  R  G  R  G  N  W  R  I  G  L  G  R  L  C  G  C  R  R  G  R  S  S  R  R  R  *  G  L  W  R  R  T  W  R  S  K  L  K  G  W  K  L  A  *  G  F  G  R  W  R  S  L  G  L  R  F  L  R  L  F  G  P  I  A  R  S  M  L  A  L  L  A  A  *  I  R  C  Y  K  Y  I  F  K  F  V  *  N  *  F  N  K  K  N  I  F  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44512" stop="44874"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLLSNWLGVWISNGAKLLSPPDAGHVAPSVAANSELMLVALLTRSRKLAHRAWPIVWLPERAVISAALRPLAENMEIKVERVEVGIGIWALAELRLAVLASLRPNCTVHVGPPSCVNTML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="54527" PGL_stop="51097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54527" e_stop="54225"/>
            <exon e_start="52930" e_stop="52683"/>
            <exon e_start="52358" e_stop="52223"/>
            <exon e_start="51766" e_stop="51508"/>
            <exon e_start="51359" e_stop="51227"/>
            <exon e_start="51103" e_stop="51097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.898" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.567" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54527" e_stop="54225" e_length="303"/>
          </exon>
          <intron i_serial="1" don_prob="0.898" acc_prob="0.988">
            <gDNA_intron_boundary i_start="54224" i_stop="52931" i_length="1294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52930" e_stop="52683" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52682" i_stop="52359" i_length="324"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52358" e_stop="52223" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.990">
            <gDNA_intron_boundary i_start="52222" i_stop="51767" i_length="456"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51766" e_stop="51508" e_length="259"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.994">
            <gDNA_intron_boundary i_start="51507" i_stop="51360" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51359" e_stop="51227" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.567">
            <gDNA_intron_boundary i_start="51226" i_stop="51104" i_length="123"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51103" e_stop="51097" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54527" stop="54225"/>
              <exon start="52930" stop="52683"/>
              <exon start="52358" stop="52335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54522" stop="54225"/>
              <exon start="52930" stop="52683"/>
              <exon start="52358" stop="52227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54522" stop="54225"/>
              <exon start="52930" stop="52683"/>
              <exon start="52358" stop="52280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52766" stop="52683"/>
              <exon start="52358" stop="52223"/>
              <exon start="51766" stop="51508"/>
              <exon start="51359" stop="51227"/>
              <exon start="51103" stop="51097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729300" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAAAAAAGAAGACTGTTTTGTGACTCAGTCCCATTTAGTCTTGTCAACATCACAGGACTAGTATTGTACTTCTTAAACTTCTCTCTTTAATGGCTTCTCTATAACCCCTCTTTGGGTGTTTTCCCTTTTCTTTGCTAGCACCATGGAAGCAGAAAATGATGAGTACCATAAGAAAGAAAGGGCAATTGCAGTTACTATACTGGTCTTTGCTTCTCTTGCCATTGCTTCTTTGTTTGTAGCCTNTAGTTACTATTGTTATATCCGTAATAAAGTTGCCAAGCGTCTCAAGAACCGCACTT : ATACGGAGAGTGCTTGTGAGGACAAGGGCAATAGTTTCTCCAATCTGGAAGTTATTGCAGAGAAGGGACTTCAGGTTTTCACATTTAAGCAGCTGCATTCAGCAACTGGTGGATTTGGAAAATCTAATGTGATTGGAAATGGTGCTTTCGGGTCAGTATATAGAGGAGTACTTCAAGATGGTAGGAAGGTTGCAATTAAGCTGATGGATCAGGCTGGAAAACAGGGGGAGGAAGAATTCAAAGTGGAG : GTGGAGTTGCTATGCCGCTTGCGCTCACCGTATTTGCTGTCATTGATTGGCTATTGTTCAGAAAGCAGCCATAAATTGCTTGTATATGAGTTCATGGCAAATGGTGGTTTACAGGAGCACTTGTATCCAATCAAAG : GTTCCAATAATTTTTGTCCAAAGTTGGACTGGAAGACCCGGTTAAGAATAGCGTTGGAGGCTGCTAAAGGTTTGGAATATCTACATGAGCATGTCAATCCCCCAGTTATACATAGAGACCTCAAAAGTAGCAATATTCTTTTGGACAAAAATTTCCATGCCAAAGTTTCTGACTTCGGATTGGCCAAGCTTGGATCTGATAAAGCTGGTGGACATGTCTCTACCCGAGTTTTGGGAACACAGGGATATGTTGCTCCAGA : ATATGCATTAACAGGACACTTGACCACCAAATCAGATGTTTACAGTTATGGGGTTGTCCTCCTAGAGTTGTTGACAGGGAGAGTTCCAGTTGATATGAAGAGATCTCCTGGCGAAGGCGTTCTTGTTTCTTGG : GCATTGC</gDNA_template>
            <first_frame> R  K  K  K  K  T  V  L  *  L  S  P  I  *  S  C  Q  H  H  R  T  S  I  V  L  L  K  L  L  S  L  M  A  S  L  *  P  L  F  G  C  F  P  F  S  L  L  A  P  W  K  Q  K  M  M  S  T  I  R  K  K  G  Q  L  Q  L  L  Y  W  S  L  L  L  L  P  L  L  L  C  L  *  P  L  V  T  I  V  I  S  V  I  K  L  P  S  V  S  R  T  A  L  :  I  R  R  V  L  V  R  T  R  A  I  V  S  P  I  W  K  L  L  Q  R  R  D  F  R  F  S  H  L  S  S  C  I  Q  Q  L  V  D  L  E  N  L  M  *  L  E  M  V  L  S  G  Q  Y  I  E  E  Y  F  K  M  V  G  R  L  Q  L  S  *  W  I  R  L  E  N  R  G  R  K  N  S  K  W  R :   W  S  C  Y  A  A  C  A  H  R  I  C  C  H  *  L  A  I  V  Q  K  A  A  I  N  C  L  Y  M  S  S  W  Q  M  V  V  Y  R  S  T  C  I  Q  S  K  :  V  P  I  I  F  V  Q  S  W  T  G  R  P  G  *  E  *  R  W  R  L  L  K  V  W  N  I  Y  M  S  M  S  I  P  Q  L  Y  I  E  T  S  K  V  A  I  F  F  W  T  K  I  S  M  P  K  F  L  T  S  D  W  P  S  L  D  L  I  K  L  V  D  M  S  L  P  E  F  W  E  H  R  D  M  L  L  Q   : N  M  H  *  Q  D  T  *  P  P  N  Q  M  F  T  V  M  G  L  S  S  *  S  C  *  Q  G  E  F  Q  L  I  *  R  D  L  L  A  K  A  F  L  F  L  G :   H  C </first_frame>
            <second_frame>  E  K  K  R  R  L  F  C  D  S  V  P  F  S  L  V  N  I  T  G  L  V  L  Y  F  L  N  F  S  L  *  W  L  L  Y  N  P  S  L  G  V  F  P  F  L  C  *  H  H  G  S  R  K  *  *  V  P  *  E  R  K  G  N  C  S  Y  Y  T  G  L  C  F  S  C  H  C  F  F  V  C  S  L  *  L  L  L  L  Y  P  *  *  S  C  Q  A  S  Q  E  P  H  L :   Y  G  E  C  L  *  G  Q  G  Q  *  F  L  Q  S  G  S  Y  C  R  E  G  T  S  G  F  H  I  *  A  A  A  F  S  N  W  W  I  W  K  I  *  C  D  W  K  W  C  F  R  V  S  I  *  R  S  T  S  R  W  *  E  G  C  N  *  A  D  G  S  G  W  K  T  G  G  G  R  I  Q  S  G   : G  G  V  A  M  P  L  A  L  T  V  F  A  V  I  D  W  L  L  F  R  K  Q  P  *  I  A  C  I  *  V  H  G  K  W  W  F  T  G  A  L  V  S  N  Q  R :   F  Q  *  F  L  S  K  V  G  L  E  D  P  V  K  N  S  V  G  G  C  *  R  F  G  I  S  T  *  A  C  Q  S  P  S  Y  T  *  R  P  Q  K  *  Q  Y  S  F  G  Q  K  F  P  C  Q  S  F  *  L  R  I  G  Q  A  W  I  *  *  S  W  W  T  C  L  Y  P  S  F  G  N  T  G  I  C  C  S  R  :  I  C  I  N  R  T  L  D  H  Q  I  R  C  L  Q  L  W  G  C  P  P  R  V  V  D  R  E  S  S  S  *  Y  E  E  I  S  W  R  R  R  S  C  F  L   : G  I   </second_frame>
            <third_frame>   K  K  K  E  D  C  F  V  T  Q  S  H  L  V  L  S  T  S  Q  D  *  Y  C  T  S  *  T  S  L  F  N  G  F  S  I  T  P  L  W  V  F  S  L  F  F  A  S  T  M  E  A  E  N  D  E  Y  H  K  K  E  R  A  I  A  V  T  I  L  V  F  A  S  L  A  I  A  S  L  F  V  A  F  S  Y  Y  C  Y  I  R  N  K  V  A  K  R  L  K  N  R  T   : Y  T  E  S  A  C  E  D  K  G  N  S  F  S  N  L  E  V  I  A  E  K  G  L  Q  V  F  T  F  K  Q  L  H  S  A  T  G  G  F  G  K  S  N  V  I  G  N  G  A  F  G  S  V  Y  R  G  V  L  Q  D  G  R  K  V  A  I  K  L  M  D  Q  A  G  K  Q  G  E  E  E  F  K  V  E  :  V  E  L  L  C  R  L  R  S  P  Y  L  L  S  L  I  G  Y  C  S  E  S  S  H  K  L  L  V  Y  E  F  M  A  N  G  G  L  Q  E  H  L  Y  P  I  K   : G  S  N  N  F  C  P  K  L  D  W  K  T  R  L  R  I  A  L  E  A  A  K  G  L  E  Y  L  H  E  H  V  N  P  P  V  I  H  R  D  L  K  S  S  N  I  L  L  D  K  N  F  H  A  K  V  S  D  F  G  L  A  K  L  G  S  D  K  A  G  G  H  V  S  T  R  V  L  G  T  Q  G  Y  V  A  P  E :   Y  A  L  T  G  H  L  T  T  K  S  D  V  Y  S  Y  G  V  V  L  L  E  L  L  T  G  R  V  P  V  D  M  K  R  S  P  G  E  G  V  L  V  S  W  :  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54447" stop="54225"/>
                    <exon start="52930" stop="52683"/>
                    <exon start="52358" stop="52223"/>
                    <exon start="51766" stop="51508"/>
                    <exon start="51359" stop="51227"/>
                    <exon start="51103" stop="51098"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSLFNGFSITPLWVFSLFFASTMEAENDEYHKKERAIAVTILVFASLAIASLFVAFSYYCYIRNKVAKRLKNRTYTESACEDKGNSFSNLEVIAEKGLQVFTFKQLHSATGGFGKSNVIGNGAFGSVYRGVLQDGRKVAIKLMDQAGKQGEEEFKVEVELLCRLRSPYLLSLIGYCSESSHKLLVYEFMANGGLQEHLYPIKGSNNFCPKLDWKTRLRIALEAAKGLEYLHEHVNPPVIHRDLKSSNILLDKNFHAKVSDFGLAKLGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRSPGEGVLVSWAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="58152" PGL_stop="58582"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58152" e_stop="58582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="58152" e_stop="58582" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58152" stop="58582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58199" stop="58390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGATAGTGGAAAAGGCACAAAAATGGGGAAAGAACCAACATGGCATGAATTACTAGGAAGCAACAACTGGGAAGGTCTTCTTGAACCATTACACCTCAATCTCCGGCGACTCATACTCCGGTGCGGCGACTTTTGTCAAGCAACTTACGACGCCTTCAACAATGACGAATACTCCATGTACTGTGGCAGTAGTCGTTACGGTAAAAGTTCACTTTTCCACAAAGTCATGTTCAAATCCGCCTCAGATTACCAAATCGTCAGCTTCCTTTACGCCACTGCTCGTGTTGGTGCCCATAAAGCCCTCTTCCTCCACTCTCTTTCTCGTGAATCATGGGATCGTGAATCCAATTGGATCGGGTTTATAGCTATAACTAACGACGAAATCAGTGAACAACTGGGTCGTCGTGAAATCTACATAGCATTTCGTG</gDNA_template>
            <first_frame> F  *  *  W  K  R  H  K  N  G  E  R  T  N  M  A  *  I  T  R  K  Q  Q  L  G  R  S  S  *  T  I  T  P  Q  S  P  A  T  H  T  P  V  R  R  L  L  S  S  N  L  R  R  L  Q  Q  *  R  I  L  H  V  L  W  Q  *  S  L  R  *  K  F  T  F  P  Q  S  H  V  Q  I  R  L  R  L  P  N  R  Q  L  P  L  R  H  C  S  C  W  C  P  *  S  P  L  P  P  L  S  F  S  *  I  M  G  S  *  I  Q  L  D  R  V  Y  S  Y  N  *  R  R  N  Q  *  T  T  G  S  S  *  N  L  H  S  I  S   </first_frame>
            <second_frame>  S  D  S  G  K  G  T  K  M  G  K  E  P  T  W  H  E  L  L  G  S  N  N  W  E  G  L  L  E  P  L  H  L  N  L  R  R  L  I  L  R  C  G  D  F  C  Q  A  T  Y  D  A  F  N  N  D  E  Y  S  M  Y  C  G  S  S  R  Y  G  K  S  S  L  F  H  K  V  M  F  K  S  A  S  D  Y  Q  I  V  S  F  L  Y  A  T  A  R  V  G  A  H  K  A  L  F  L  H  S  L  S  R  E  S  W  D  R  E  S  N  W  I  G  F  I  A  I  T  N  D  E  I  S  E  Q  L  G  R  R  E  I  Y  I  A  F  R  </second_frame>
            <third_frame>   L  I  V  E  K  A  Q  K  W  G  K  N  Q  H  G  M  N  Y  *  E  A  T  T  G  K  V  F  L  N  H  Y  T  S  I  S  G  D  S  Y  S  G  A  A  T  F  V  K  Q  L  T  T  P  S  T  M  T  N  T  P  C  T  V  A  V  V  V  T  V  K  V  H  F  S  T  K  S  C  S  N  P  P  Q  I  T  K  S  S  A  S  F  T  P  L  L  V  L  V  P  I  K  P  S  S  S  T  L  F  L  V  N  H  G  I  V  N  P  I  G  S  G  L  *  L  *  L  T  T  K  S  V  N  N  W  V  V  V  K  S  T  *  H  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58153" stop="58581"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDSGKGTKMGKEPTWHELLGSNNWEGLLEPLHLNLRRLILRCGDFCQATYDAFNNDEYSMYCGSSRYGKSSLFHKVMFKSASDYQIVSFLYATARVGAHKALFLHSLSRESWDRESNWIGFIAITNDEISEQLGRREIYIAFR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="64007" PGL_stop="69816"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64007" e_stop="64222"/>
            <exon e_start="65122" e_stop="65214"/>
            <exon e_start="65373" e_stop="65432"/>
            <exon e_start="65508" e_stop="65780"/>
            <exon e_start="65857" e_stop="65931"/>
            <exon e_start="66008" e_stop="66064"/>
            <exon e_start="66533" e_stop="66673"/>
            <exon e_start="66775" e_stop="66825"/>
            <exon e_start="66907" e_stop="67002"/>
            <exon e_start="67136" e_stop="67219"/>
            <exon e_start="67318" e_stop="67419"/>
            <exon e_start="68357" e_stop="68857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.469" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.051" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64007" e_stop="64222" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.469" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65122" e_stop="65214" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.957">
            <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65373" e_stop="65432" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.944">
            <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65508" e_stop="65780" e_length="273"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.828">
            <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65857" e_stop="65931" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.892" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66008" e_stop="66064" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.974">
            <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="66533" e_stop="66673" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="66674" i_stop="66774" i_length="101"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66775" e_stop="66825" e_length="51"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.051">
            <gDNA_intron_boundary i_start="66826" i_stop="66906" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="66907" e_stop="67002" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.973">
            <gDNA_intron_boundary i_start="67003" i_stop="67135" i_length="133"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67136" e_stop="67219" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67318" e_stop="67419" e_length="102"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937"/>
          </intron>
          <exon e_serial="12" e_score="0.928">
            <gDNA_exon_boundary e_start="68357" e_stop="68857" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64007" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64007" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64009" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64011" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64013" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64013" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64018" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64019" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64023" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64027" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64028" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64041" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64042" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64042" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64042" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64080" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64088" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64117" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64153" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65192" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65762" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65864" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66014" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66040" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66668" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548601" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67159" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67214" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424325" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67325" stop="67419"/>
              <exon start="68357" stop="68814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67338" stop="67419"/>
              <exon start="68357" stop="68631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68403" stop="68845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68460" stop="68814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232669" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68473" stop="68809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232169" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGAAGAGTAGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG : GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG : ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG : GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG : ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTG : GTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTG : GTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAG : CCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAG : GTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAG : GTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA : CTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG : TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCTATTTTTATTTTTTAATATAAGGCATATATGAATTATCTCTTCT</gDNA_template>
            <first_frame> S  E  E  *  Q  R  R  R  E  H  M  A  S  I  P  L  G  P  Q  H  H  N  P  P  E  N  H  H  H  H  H  L  Q  P  P  P  Q  L  V  Q  Q  Q  Q  Q  Q  P  V  N  R  E  L  G  G  G  G  G  A  A  V  R  N  A  G  A  R  P  E  M  E  S  E  K  :  E  M  S  A  A  V  V  E  G  N  G  A  V  T  G  H  I  I  S  T  T  I  G  G  K  N  G  E  P  K  R  :  T  I  S  Y  M  A  E  R  V  V  G  T  G  S  F  G  I  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  L  M  R  L  M  D  H  P  N  V  I  T  L  K  H  C  F  F  S  T  T  S  R  D  E  L  F  L  N  L  V  M  D  Y  V  P  E  S  L  Y  K  V  L  K  H  Y  S  N  S  N  Q  R  M  P  L  I  Y  V  K  L  Y  M  Y  Q  :  I  F  R  G  L  A  Y  I  H  N  V  P  R  I  C  H  R  D  V  K  P  Q  N  L  L  :  V  D  P  L  T  H  Q  V  K  L  C  D  F  G  S  A  K  V  L  :  V  N  G  E  A  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  T  S  I  D  I  W  S  A  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  N  A  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  R  C  M  N  P  N  Y  T  D  F  R  F  P  Q  I  K  A  H  P  W  H  K  :  V  F  H  K  R  M  P  P  E  A  I  D  L  A  S  R  L  L  Q  Y  S  P  S  L  R  C  T  A  :  L  E  A  C  A  H  S  F  F  D  E  L  R  E  P  N  A  R  L  P  N  G  R  P  F  P  P  L  F  N  F  K  Q  E  :  L  T  G  A  S  P  D  L  V  N  K  L  I  P  E  H  V  W  R  Q  L  G  L  N  F  P  F  P  G  A  T  *  L  Y  *  C  N  I  E  L  V  Y  Q  K  K  Y  I  G  S  P  C  G  L  M  *  P  C  I  L  A  *  P  V  A  M  H  A  C  K  S  C  M  H  I  A  A  V  W  L  T  R  S  D  P  V  S  T  C  V  L  F  *  L  I  A  D  L  L  P  L  L  Y  I  V  F  D  K  K  N  S  D  R  S  I  K  *  *  I  L  *  C  L  V  K  Q  I  S  L  R  D  L  L  E  H  *  D  L  *  L  W  V  V  V  I  F  I  C  K  L  F  L  A  L  F  L  F  F  N  I  R  H  I  *  I  I  S  S </first_frame>
            <second_frame>  V  K  S  S  R  G  E  E  S  T  W  P  R  Y  R  W  D  L  S  T  I  I  R  R  K  I  T  I  T  T  T  F  S  R  R  R  S  S  C  S  S  S  S  N  S  L  *  I  V  N  *  E  E  E  E  E  L  Q  *  G  T  P  E  H  D  R  K  W  N  P  K  R :   K  C  Q  L  L  L  L  R  V  M  V  P  S  L  V  T  *  F  P  P  P  L  E  A  R  M  E  N  Q  K  G :   P  S  V  I  W  Q  S  E  L  S  V  Q  G  P  L  G  *  C  F  R :   Q  N  A  W  K  L  E  R  L  W  P  *  R  R  F  Y  R  T  N  G  I  K  I  V  N  Y  N  *  C  A  *  W  I  T  Q  M  S  L  L  *  S  T  A  S  F  P  R  L  V  E  M  S  F  F  L  I  W  S  W  I  M  S  L  K  V  Y  T  R  F  *  S  T  I  A  I  Q  I  K  G  C  H  S  Y  M  S  N  F  T  C  I  R :   Y  S  E  G  W  L  T  F  I  M  F  Q  G  F  A  I  E  M  *  N  L  K  I  F  W :   L  I  L  *  P  I  K  S  S  C  V  I  L  E  V  Q  K  S  W :   *  M  V  K  Q  I  F  H  T  F  A  L  A  T  T  E  L  Q  N  S  Y  L  V  P  Q  S  I  Q  H  Q  L  I  F  G  Q  Q  A  V  S  L  L  S  F  F  W  G  S :   R  S  F  L  A  K  M  Q  *  I  N  W  W  R  S  S  R :   S  L  V  L  L  L  G  K  K  F  D  V  *  T  Q  T  T  Q  I  S  D  S  H  R  *  K  L  I  L  G  T  R :   Y  S  I  K  E  C  L  L  K  Q  L  I  L  P  H  G  F  F  N  I  H  Q  V  F  A  V  L  H :   *  K  H  V  H  I  R  S  L  M  S  F  V  S  P  M  P  V  S  L  M  D  V  H  F  H  L  F  S  T  L  N  K  S :   *  L  E  L  H  L  I  W  S  T  S  *  S  L  S  M  C  G  G  N  L  V  *  I  S  H  F  L  V  R  R  N  C  T  N  V  I  *  S  W  C  I  R  K  N  I  *  G  V  L  V  D  *  C  N  H  A  F  W  R  N  Q  W  L  C  T  H  V  K  V  V  C  I  *  P  L  F  G  L  Q  E  V  I  L  S  L  L  V  S  S  F  S  *  *  Q  T  C  C  L  F  C  T  L  F  L  I  R  R  I  Q  I  G  V  *  S  D  K  Y  C  N  V  *  L  S  R  F  P  *  E  T  F  W  S  T  R  T  C  S  F  G  L  *  L  Y  L  Y  A  S  C  F  *  L  Y  F  Y  F  L  I  *  G  I  Y  E  L  S  L   </second_frame>
            <third_frame>   *  R  V  A  E  E  K  R  A  H  G  L  D  T  A  G  T  S  A  P  *  S  A  G  K  S  P  S  P  P  P  S  A  A  A  A  A  R  A  A  A  A  A  T  A  C  E  S  *  T  R  R  R  R  R  S  C  S  K  E  R  R  S  T  T  G  N  G  I  R  K   : G  N  V  S  C  C  C  *  G  *  W  C  R  H  W  S  H  N  F  H  H  H  W  R  Q  E  W  R  T  K  K   : D  H  Q  L  Y  G  R  A  S  C  R  Y  R  V  L  W  D  S  V  S   : G  K  M  L  G  N  W  R  D  C  G  H  K  E  G  F  T  G  Q  T  V  *  K  S  *  T  T  T  D  A  L  D  G  S  P  K  C  H  Y  S  K  A  L  L  L  F  H  D  *  *  R  *  A  F  S  *  F  G  H  G  L  C  P  *  K  F  I  Q  G  F  K  A  L  *  Q  F  K  S  K  D  A  T  H  I  C  Q  T  L  H  V  S   : D  I  Q  R  A  G  L  H  S  *  C  S  K  D  L  P  *  R  C  E  T  S  K  S  F   : G  *  S  S  D  P  S  S  Q  A  V  *  F  W  K  C  K  S  P   : G  K  W  *  S  K  Y  F  I  H  L  L  S  L  L  Q  S  S  R  T  H  I  W  C  H  R  V  Y  N  I  N  *  Y  L  V  S  R  L  C  P  C  *  A  S  S  G  A   : A  A  L  S  W  R  K  C  S  R  S  T  G  G  D  H  Q   : G  P  W  Y  S  Y  S  G  R  N  S  M  Y  E  P  K  L  H  R  F  Q  I  P  T  D  K  S  S  S  L  A  Q   : G  I  P  *  K  N  A  S  *  S  N  *  S  C  L  T  A  S  S  I  F  T  K  S  S  L  Y  C   : T  R  S  M  C  T  F  V  L  *  *  A  S  *  A  Q  C  P  S  P  *  W  T  S  I  S  T  S  F  Q  L  *  T  R   : V  N  W  S  F  T  *  F  G  Q  Q  A  D  P  *  A  C  V  E  A  T  W  F  E  F  P  I  S  W  C  D  V  I  V  L  M  *  Y  R  V  G  V  S  E  K  I  Y  R  E  S  L  W  I  N  V  T  M  H  F  G  V  T  S  G  Y  A  R  M  *  K  L  Y  A  Y  S  R  C  L  A  Y  K  K  *  S  C  L  Y  L  C  P  L  L  A  N  S  R  P  V  A  S  F  V  H  C  F  *  *  E  E  F  R  *  E  Y  K  V  I  N  I  V  M  S  S  *  A  D  F  L  E  R  P  S  G  A  L  G  L  V  A  L  G  C  S  Y  I  Y  M  Q  V  V  F  S  S  I  F  I  F  *  Y  K  A  Y  M  N  Y  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64019" stop="64222"/>
                    <exon start="65122" stop="65214"/>
                    <exon start="65373" stop="65432"/>
                    <exon start="65508" stop="65780"/>
                    <exon start="65857" stop="65931"/>
                    <exon start="66008" stop="66064"/>
                    <exon start="66533" stop="66673"/>
                    <exon start="66775" stop="66825"/>
                    <exon start="66907" stop="67002"/>
                    <exon start="67136" stop="67219"/>
                    <exon start="67318" stop="67419"/>
                    <exon start="68357" stop="68452"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1329</number_coding_nucleotides>
                  <number_encoded_amino_acids>443</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRRREHMASIPLGPQHHNPPENHHHHHLQPPPQLVQQQQQQPVNRELGGGGGAAVRNAGARPEMESEKEMSAAVVEGNGAVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQLMRLMDHPNVITLKHCFFSTTSRDELFLNLVMDYVPESLYKVLKHYSNSNQRMPLIYVKLYMYQIFRGLAYIHNVPRICHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVNGEANISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHSFFDELREPNARLPNGRPFPPLFNFKQELTGASPDLVNKLIPEHVWRQLGLNFPFPGAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64007" e_stop="64222"/>
            <exon e_start="65122" e_stop="65214"/>
            <exon e_start="65373" e_stop="65432"/>
            <exon e_start="65508" e_stop="65780"/>
            <exon e_start="65857" e_stop="65931"/>
            <exon e_start="66008" e_stop="66064"/>
            <exon e_start="66533" e_stop="66673"/>
            <exon e_start="66775" e_stop="66825"/>
            <exon e_start="66907" e_stop="67002"/>
            <exon e_start="67136" e_stop="67219"/>
            <exon e_start="67318" e_stop="67419"/>
            <exon e_start="68357" e_stop="68828"/>
            <exon e_start="69525" e_stop="69816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.469" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.051" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64007" e_stop="64222" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.469" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65122" e_stop="65214" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.957">
            <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65373" e_stop="65432" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.944">
            <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65508" e_stop="65780" e_length="273"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.828">
            <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65857" e_stop="65931" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.892" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66008" e_stop="66064" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.974">
            <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="66533" e_stop="66673" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="66674" i_stop="66774" i_length="101"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66775" e_stop="66825" e_length="51"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.051">
            <gDNA_intron_boundary i_start="66826" i_stop="66906" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="66907" e_stop="67002" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.973">
            <gDNA_intron_boundary i_start="67003" i_stop="67135" i_length="133"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67136" e_stop="67219" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67318" e_stop="67419" e_length="102"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="68357" e_stop="68828" e_length="472"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68829" i_stop="69524" i_length="696"/>
          </intron>
          <exon e_serial="13" e_score="0.955">
            <gDNA_exon_boundary e_start="69525" e_stop="69816" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64007" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64007" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64009" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64011" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64013" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64013" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64018" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64019" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64023" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64027" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64028" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64041" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64042" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64042" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64042" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64080" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64088" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64117" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64153" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65192" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65762" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65864" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66014" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66040" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66668" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548601" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67159" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67325" stop="67419"/>
              <exon start="68357" stop="68814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67338" stop="67419"/>
              <exon start="68357" stop="68631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68460" stop="68814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232669" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68473" stop="68809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232169" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68787" stop="68828"/>
              <exon start="69525" stop="69816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267598" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGAAGAGTAGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG : GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG : ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG : GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG : ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTG : GTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTG : GTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAG : CCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAG : GTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAG : GTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA : CTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG : TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCTATTTTTATTTTTTA : TTCAAAATGCTGGCATAAATATCATGTAACTACGCTGTTGTATATGAAAAACAGGAGCTACTTGACACCAGAGATGATTAATGTCTGCAATGTACCCTAAAATAACTACAACTCCACCTCAACGTTGCTAATGACTTCTACACCTTAAAATGGCTCTATTTATTACCCCTCCCCTCCGTACGATAGTTTTAACTCAACTATTACAAGTTTACAACATGTTGTGATCTTTCCGATCACAAAAAATGAATTTCCACAGCCTTTATTTAGCTGATTATTGAATCCATGACGTTAA</gDNA_template>
            <first_frame> S  E  E  *  Q  R  R  R  E  H  M  A  S  I  P  L  G  P  Q  H  H  N  P  P  E  N  H  H  H  H  H  L  Q  P  P  P  Q  L  V  Q  Q  Q  Q  Q  Q  P  V  N  R  E  L  G  G  G  G  G  A  A  V  R  N  A  G  A  R  P  E  M  E  S  E  K  :  E  M  S  A  A  V  V  E  G  N  G  A  V  T  G  H  I  I  S  T  T  I  G  G  K  N  G  E  P  K  R  :  T  I  S  Y  M  A  E  R  V  V  G  T  G  S  F  G  I  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  L  M  R  L  M  D  H  P  N  V  I  T  L  K  H  C  F  F  S  T  T  S  R  D  E  L  F  L  N  L  V  M  D  Y  V  P  E  S  L  Y  K  V  L  K  H  Y  S  N  S  N  Q  R  M  P  L  I  Y  V  K  L  Y  M  Y  Q  :  I  F  R  G  L  A  Y  I  H  N  V  P  R  I  C  H  R  D  V  K  P  Q  N  L  L  :  V  D  P  L  T  H  Q  V  K  L  C  D  F  G  S  A  K  V  L  :  V  N  G  E  A  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  T  S  I  D  I  W  S  A  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  N  A  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  R  C  M  N  P  N  Y  T  D  F  R  F  P  Q  I  K  A  H  P  W  H  K  :  V  F  H  K  R  M  P  P  E  A  I  D  L  A  S  R  L  L  Q  Y  S  P  S  L  R  C  T  A  :  L  E  A  C  A  H  S  F  F  D  E  L  R  E  P  N  A  R  L  P  N  G  R  P  F  P  P  L  F  N  F  K  Q  E  :  L  T  G  A  S  P  D  L  V  N  K  L  I  P  E  H  V  W  R  Q  L  G  L  N  F  P  F  P  G  A  T  *  L  Y  *  C  N  I  E  L  V  Y  Q  K  K  Y  I  G  S  P  C  G  L  M  *  P  C  I  L  A  *  P  V  A  M  H  A  C  K  S  C  M  H  I  A  A  V  W  L  T  R  S  D  P  V  S  T  C  V  L  F  *  L  I  A  D  L  L  P  L  L  Y  I  V  F  D  K  K  N  S  D  R  S  I  K  *  *  I  L  *  C  L  V  K  Q  I  S  L  R  D  L  L  E  H  *  D  L  *  L  W  V  V  V  I  F  I  C  K  L  F  L  A  L  F  L  F  F   : I  Q  N  A  G  I  N  I  M  *  L  R  C  C  I  *  K  T  G  A  T  *  H  Q  R  *  L  M  S  A  M  Y  P  K  I  T  T  T  P  P  Q  R  C  *  *  L  L  H  L  K  M  A  L  F  I  T  P  P  L  R  T  I  V  L  T  Q  L  L  Q  V  Y  N  M  L  *  S  F  R  S  Q  K  M  N  F  H  S  L  Y  L  A  D  Y  *  I  H  D  V   </first_frame>
            <second_frame>  V  K  S  S  R  G  E  E  S  T  W  P  R  Y  R  W  D  L  S  T  I  I  R  R  K  I  T  I  T  T  T  F  S  R  R  R  S  S  C  S  S  S  S  N  S  L  *  I  V  N  *  E  E  E  E  E  L  Q  *  G  T  P  E  H  D  R  K  W  N  P  K  R :   K  C  Q  L  L  L  L  R  V  M  V  P  S  L  V  T  *  F  P  P  P  L  E  A  R  M  E  N  Q  K  G :   P  S  V  I  W  Q  S  E  L  S  V  Q  G  P  L  G  *  C  F  R :   Q  N  A  W  K  L  E  R  L  W  P  *  R  R  F  Y  R  T  N  G  I  K  I  V  N  Y  N  *  C  A  *  W  I  T  Q  M  S  L  L  *  S  T  A  S  F  P  R  L  V  E  M  S  F  F  L  I  W  S  W  I  M  S  L  K  V  Y  T  R  F  *  S  T  I  A  I  Q  I  K  G  C  H  S  Y  M  S  N  F  T  C  I  R :   Y  S  E  G  W  L  T  F  I  M  F  Q  G  F  A  I  E  M  *  N  L  K  I  F  W :   L  I  L  *  P  I  K  S  S  C  V  I  L  E  V  Q  K  S  W :   *  M  V  K  Q  I  F  H  T  F  A  L  A  T  T  E  L  Q  N  S  Y  L  V  P  Q  S  I  Q  H  Q  L  I  F  G  Q  Q  A  V  S  L  L  S  F  F  W  G  S :   R  S  F  L  A  K  M  Q  *  I  N  W  W  R  S  S  R :   S  L  V  L  L  L  G  K  K  F  D  V  *  T  Q  T  T  Q  I  S  D  S  H  R  *  K  L  I  L  G  T  R :   Y  S  I  K  E  C  L  L  K  Q  L  I  L  P  H  G  F  F  N  I  H  Q  V  F  A  V  L  H :   *  K  H  V  H  I  R  S  L  M  S  F  V  S  P  M  P  V  S  L  M  D  V  H  F  H  L  F  S  T  L  N  K  S :   *  L  E  L  H  L  I  W  S  T  S  *  S  L  S  M  C  G  G  N  L  V  *  I  S  H  F  L  V  R  R  N  C  T  N  V  I  *  S  W  C  I  R  K  N  I  *  G  V  L  V  D  *  C  N  H  A  F  W  R  N  Q  W  L  C  T  H  V  K  V  V  C  I  *  P  L  F  G  L  Q  E  V  I  L  S  L  L  V  S  S  F  S  *  *  Q  T  C  C  L  F  C  T  L  F  L  I  R  R  I  Q  I  G  V  *  S  D  K  Y  C  N  V  *  L  S  R  F  P  *  E  T  F  W  S  T  R  T  C  S  F  G  L  *  L  Y  L  Y  A  S  C  F  *  L  Y  F  Y  F  L  :  F  K  M  L  A  *  I  S  C  N  Y  A  V  V  Y  E  K  Q  E  L  L  D  T  R  D  D  *  C  L  Q  C  T  L  K  *  L  Q  L  H  L  N  V  A  N  D  F  Y  T  L  K  W  L  Y  L  L  P  L  P  S  V  R  *  F  *  L  N  Y  Y  K  F  T  T  C  C  D  L  S  D  H  K  K  *  I  S  T  A  F  I  *  L  I  I  E  S  M  T  L  </second_frame>
            <third_frame>   *  R  V  A  E  E  K  R  A  H  G  L  D  T  A  G  T  S  A  P  *  S  A  G  K  S  P  S  P  P  P  S  A  A  A  A  A  R  A  A  A  A  A  T  A  C  E  S  *  T  R  R  R  R  R  S  C  S  K  E  R  R  S  T  T  G  N  G  I  R  K   : G  N  V  S  C  C  C  *  G  *  W  C  R  H  W  S  H  N  F  H  H  H  W  R  Q  E  W  R  T  K  K   : D  H  Q  L  Y  G  R  A  S  C  R  Y  R  V  L  W  D  S  V  S   : G  K  M  L  G  N  W  R  D  C  G  H  K  E  G  F  T  G  Q  T  V  *  K  S  *  T  T  T  D  A  L  D  G  S  P  K  C  H  Y  S  K  A  L  L  L  F  H  D  *  *  R  *  A  F  S  *  F  G  H  G  L  C  P  *  K  F  I  Q  G  F  K  A  L  *  Q  F  K  S  K  D  A  T  H  I  C  Q  T  L  H  V  S   : D  I  Q  R  A  G  L  H  S  *  C  S  K  D  L  P  *  R  C  E  T  S  K  S  F   : G  *  S  S  D  P  S  S  Q  A  V  *  F  W  K  C  K  S  P   : G  K  W  *  S  K  Y  F  I  H  L  L  S  L  L  Q  S  S  R  T  H  I  W  C  H  R  V  Y  N  I  N  *  Y  L  V  S  R  L  C  P  C  *  A  S  S  G  A   : A  A  L  S  W  R  K  C  S  R  S  T  G  G  D  H  Q   : G  P  W  Y  S  Y  S  G  R  N  S  M  Y  E  P  K  L  H  R  F  Q  I  P  T  D  K  S  S  S  L  A  Q   : G  I  P  *  K  N  A  S  *  S  N  *  S  C  L  T  A  S  S  I  F  T  K  S  S  L  Y  C   : T  R  S  M  C  T  F  V  L  *  *  A  S  *  A  Q  C  P  S  P  *  W  T  S  I  S  T  S  F  Q  L  *  T  R   : V  N  W  S  F  T  *  F  G  Q  Q  A  D  P  *  A  C  V  E  A  T  W  F  E  F  P  I  S  W  C  D  V  I  V  L  M  *  Y  R  V  G  V  S  E  K  I  Y  R  E  S  L  W  I  N  V  T  M  H  F  G  V  T  S  G  Y  A  R  M  *  K  L  Y  A  Y  S  R  C  L  A  Y  K  K  *  S  C  L  Y  L  C  P  L  L  A  N  S  R  P  V  A  S  F  V  H  C  F  *  *  E  E  F  R  *  E  Y  K  V  I  N  I  V  M  S  S  *  A  D  F  L  E  R  P  S  G  A  L  G  L  V  A  L  G  C  S  Y  I  Y  M  Q  V  V  F  S  S  I  F  I  F  Y :   S  K  C  W  H  K  Y  H  V  T  T  L  L  Y  M  K  N  R  S  Y  L  T  P  E  M  I  N  V  C  N  V  P  *  N  N  Y  N  S  T  S  T  L  L  M  T  S  T  P  *  N  G  S  I  Y  Y  P  S  P  P  Y  D  S  F  N  S  T  I  T  S  L  Q  H  V  V  I  F  P  I  T  K  N  E  F  P  Q  P  L  F  S  *  L  L  N  P  *  R  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64019" stop="64222"/>
                    <exon start="65122" stop="65214"/>
                    <exon start="65373" stop="65432"/>
                    <exon start="65508" stop="65780"/>
                    <exon start="65857" stop="65931"/>
                    <exon start="66008" stop="66064"/>
                    <exon start="66533" stop="66673"/>
                    <exon start="66775" stop="66825"/>
                    <exon start="66907" stop="67002"/>
                    <exon start="67136" stop="67219"/>
                    <exon start="67318" stop="67419"/>
                    <exon start="68357" stop="68452"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1329</number_coding_nucleotides>
                  <number_encoded_amino_acids>443</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRRREHMASIPLGPQHHNPPENHHHHHLQPPPQLVQQQQQQPVNRELGGGGGAAVRNAGARPEMESEKEMSAAVVEGNGAVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQLMRLMDHPNVITLKHCFFSTTSRDELFLNLVMDYVPESLYKVLKHYSNSNQRMPLIYVKLYMYQIFRGLAYIHNVPRICHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVNGEANISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHSFFDELREPNARLPNGRPFPPLFNFKQELTGASPDLVNKLIPEHVWRQLGLNFPFPGAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68728" stop="68828"/>
                    <exon start="69525" stop="69624"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADFLERPSGALGLVALGCSYIYMQVVFSSIFIFYSKCWHKYHVTTLLYMKNRSYLTPEMINVCNVP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="64007" e_stop="64222"/>
            <exon e_start="65122" e_stop="65214"/>
            <exon e_start="65373" e_stop="65432"/>
            <exon e_start="65508" e_stop="65780"/>
            <exon e_start="65857" e_stop="65931"/>
            <exon e_start="66008" e_stop="66064"/>
            <exon e_start="66533" e_stop="66673"/>
            <exon e_start="66775" e_stop="66825"/>
            <exon e_start="66907" e_stop="67002"/>
            <exon e_start="67136" e_stop="67219"/>
            <exon e_start="67318" e_stop="67419"/>
            <exon e_start="68357" e_stop="68462"/>
            <exon e_start="68666" e_stop="68828"/>
            <exon e_start="69525" e_stop="69816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.469" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.051" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.966"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64007" e_stop="64222" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.469" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65122" e_stop="65214" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.957">
            <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65373" e_stop="65432" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.944">
            <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65508" e_stop="65780" e_length="273"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.828">
            <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65857" e_stop="65931" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.892" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66008" e_stop="66064" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.974">
            <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="66533" e_stop="66673" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="66674" i_stop="66774" i_length="101"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66775" e_stop="66825" e_length="51"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.051">
            <gDNA_intron_boundary i_start="66826" i_stop="66906" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="66907" e_stop="67002" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.973">
            <gDNA_intron_boundary i_start="67003" i_stop="67135" i_length="133"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67136" e_stop="67219" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67318" e_stop="67419" e_length="102"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="68357" e_stop="68462" e_length="106"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68463" i_stop="68665" i_length="203"/>
          </intron>
          <exon e_serial="13" e_score="0.966">
            <gDNA_exon_boundary e_start="68666" e_stop="68828" e_length="163"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68829" i_stop="69524" i_length="696"/>
          </intron>
          <exon e_serial="14" e_score="0.955">
            <gDNA_exon_boundary e_start="69525" e_stop="69816" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64007" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64007" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64009" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64011" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64013" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64013" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64018" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64019" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64023" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64027" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64028" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
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              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64041" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
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              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64042" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
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              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64042" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64042" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64080" stop="64222"/>
              <exon start="65122" stop="65214"/>
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              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64088" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64117" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64153" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
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              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65192" stop="65214"/>
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              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65762" stop="65780"/>
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              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66040" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66816" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68462"/>
              <exon start="68666" stop="68814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68787" stop="68828"/>
              <exon start="69525" stop="69816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267598" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGAAGAGTAGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG : GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG : ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG : GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG : ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTG : GTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTG : GTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAG : CCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAG : GTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAG : GTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA : CTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG : TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAAT : GTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCTATTTTTATTTTTTA : TTCAAAATGCTGGCATAAATATCATGTAACTACGCTGTTGTATATGAAAAACAGGAGCTACTTGACACCAGAGATGATTAATGTCTGCAATGTACCCTAAAATAACTACAACTCCACCTCAACGTTGCTAATGACTTCTACACCTTAAAATGGCTCTATTTATTACCCCTCCCCTCCGTACGATAGTTTTAACTCAACTATTACAAGTTTACAACATGTTGTGATCTTTCCGATCACAAAAAATGAATTTCCACAGCCTTTATTTAGCTGATTATTGAATCCATGACGTTAA</gDNA_template>
            <first_frame> S  E  E  *  Q  R  R  R  E  H  M  A  S  I  P  L  G  P  Q  H  H  N  P  P  E  N  H  H  H  H  H  L  Q  P  P  P  Q  L  V  Q  Q  Q  Q  Q  Q  P  V  N  R  E  L  G  G  G  G  G  A  A  V  R  N  A  G  A  R  P  E  M  E  S  E  K  :  E  M  S  A  A  V  V  E  G  N  G  A  V  T  G  H  I  I  S  T  T  I  G  G  K  N  G  E  P  K  R  :  T  I  S  Y  M  A  E  R  V  V  G  T  G  S  F  G  I  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  L  M  R  L  M  D  H  P  N  V  I  T  L  K  H  C  F  F  S  T  T  S  R  D  E  L  F  L  N  L  V  M  D  Y  V  P  E  S  L  Y  K  V  L  K  H  Y  S  N  S  N  Q  R  M  P  L  I  Y  V  K  L  Y  M  Y  Q  :  I  F  R  G  L  A  Y  I  H  N  V  P  R  I  C  H  R  D  V  K  P  Q  N  L  L  :  V  D  P  L  T  H  Q  V  K  L  C  D  F  G  S  A  K  V  L  :  V  N  G  E  A  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  T  S  I  D  I  W  S  A  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  N  A  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  R  C  M  N  P  N  Y  T  D  F  R  F  P  Q  I  K  A  H  P  W  H  K  :  V  F  H  K  R  M  P  P  E  A  I  D  L  A  S  R  L  L  Q  Y  S  P  S  L  R  C  T  A  :  L  E  A  C  A  H  S  F  F  D  E  L  R  E  P  N  A  R  L  P  N  G  R  P  F  P  P  L  F  N  F  K  Q  E  :  L  T  G  A  S  P  D  L  V  N  K  L  I  P  E  H  V  W  R  Q  L  G  L  N  F  P  F  P  G  A  T  *  L  Y  *   : C  F  *  *  E  E  F  R  *  E  Y  K  V  I  N  I  V  M  S  S  *  A  D  F  L  E  R  P  S  G  A  L  G  L  V  A  L  G  C  S  Y  I  Y  M  Q  V  V  F  S  S  I  F  I  F  Y :   S  K  C  W  H  K  Y  H  V  T  T  L  L  Y  M  K  N  R  S  Y  L  T  P  E  M  I  N  V  C  N  V  P  *  N  N  Y  N  S  T  S  T  L  L  M  T  S  T  P  *  N  G  S  I  Y  Y  P  S  P  P  Y  D  S  F  N  S  T  I  T  S  L  Q  H  V  V  I  F  P  I  T  K  N  E  F  P  Q  P  L  F  S  *  L  L  N  P  *  R  * </first_frame>
            <second_frame>  V  K  S  S  R  G  E  E  S  T  W  P  R  Y  R  W  D  L  S  T  I  I  R  R  K  I  T  I  T  T  T  F  S  R  R  R  S  S  C  S  S  S  S  N  S  L  *  I  V  N  *  E  E  E  E  E  L  Q  *  G  T  P  E  H  D  R  K  W  N  P  K  R :   K  C  Q  L  L  L  L  R  V  M  V  P  S  L  V  T  *  F  P  P  P  L  E  A  R  M  E  N  Q  K  G :   P  S  V  I  W  Q  S  E  L  S  V  Q  G  P  L  G  *  C  F  R :   Q  N  A  W  K  L  E  R  L  W  P  *  R  R  F  Y  R  T  N  G  I  K  I  V  N  Y  N  *  C  A  *  W  I  T  Q  M  S  L  L  *  S  T  A  S  F  P  R  L  V  E  M  S  F  F  L  I  W  S  W  I  M  S  L  K  V  Y  T  R  F  *  S  T  I  A  I  Q  I  K  G  C  H  S  Y  M  S  N  F  T  C  I  R :   Y  S  E  G  W  L  T  F  I  M  F  Q  G  F  A  I  E  M  *  N  L  K  I  F  W :   L  I  L  *  P  I  K  S  S  C  V  I  L  E  V  Q  K  S  W :   *  M  V  K  Q  I  F  H  T  F  A  L  A  T  T  E  L  Q  N  S  Y  L  V  P  Q  S  I  Q  H  Q  L  I  F  G  Q  Q  A  V  S  L  L  S  F  F  W  G  S :   R  S  F  L  A  K  M  Q  *  I  N  W  W  R  S  S  R :   S  L  V  L  L  L  G  K  K  F  D  V  *  T  Q  T  T  Q  I  S  D  S  H  R  *  K  L  I  L  G  T  R :   Y  S  I  K  E  C  L  L  K  Q  L  I  L  P  H  G  F  F  N  I  H  Q  V  F  A  V  L  H :   *  K  H  V  H  I  R  S  L  M  S  F  V  S  P  M  P  V  S  L  M  D  V  H  F  H  L  F  S  T  L  N  K  S :   *  L  E  L  H  L  I  W  S  T  S  *  S  L  S  M  C  G  G  N  L  V  *  I  S  H  F  L  V  R  R  N  C  T  N  :  V  F  D  K  K  N  S  D  R  S  I  K  *  *  I  L  *  C  L  V  K  Q  I  S  L  R  D  L  L  E  H  *  D  L  *  L  W  V  V  V  I  F  I  C  K  L  F  L  A  L  F  L  F  F   : I  Q  N  A  G  I  N  I  M  *  L  R  C  C  I  *  K  T  G  A  T  *  H  Q  R  *  L  M  S  A  M  Y  P  K  I  T  T  T  P  P  Q  R  C  *  *  L  L  H  L  K  M  A  L  F  I  T  P  P  L  R  T  I  V  L  T  Q  L  L  Q  V  Y  N  M  L  *  S  F  R  S  Q  K  M  N  F  H  S  L  Y  L  A  D  Y  *  I  H  D  V   </second_frame>
            <third_frame>   *  R  V  A  E  E  K  R  A  H  G  L  D  T  A  G  T  S  A  P  *  S  A  G  K  S  P  S  P  P  P  S  A  A  A  A  A  R  A  A  A  A  A  T  A  C  E  S  *  T  R  R  R  R  R  S  C  S  K  E  R  R  S  T  T  G  N  G  I  R  K   : G  N  V  S  C  C  C  *  G  *  W  C  R  H  W  S  H  N  F  H  H  H  W  R  Q  E  W  R  T  K  K   : D  H  Q  L  Y  G  R  A  S  C  R  Y  R  V  L  W  D  S  V  S   : G  K  M  L  G  N  W  R  D  C  G  H  K  E  G  F  T  G  Q  T  V  *  K  S  *  T  T  T  D  A  L  D  G  S  P  K  C  H  Y  S  K  A  L  L  L  F  H  D  *  *  R  *  A  F  S  *  F  G  H  G  L  C  P  *  K  F  I  Q  G  F  K  A  L  *  Q  F  K  S  K  D  A  T  H  I  C  Q  T  L  H  V  S   : D  I  Q  R  A  G  L  H  S  *  C  S  K  D  L  P  *  R  C  E  T  S  K  S  F   : G  *  S  S  D  P  S  S  Q  A  V  *  F  W  K  C  K  S  P   : G  K  W  *  S  K  Y  F  I  H  L  L  S  L  L  Q  S  S  R  T  H  I  W  C  H  R  V  Y  N  I  N  *  Y  L  V  S  R  L  C  P  C  *  A  S  S  G  A   : A  A  L  S  W  R  K  C  S  R  S  T  G  G  D  H  Q   : G  P  W  Y  S  Y  S  G  R  N  S  M  Y  E  P  K  L  H  R  F  Q  I  P  T  D  K  S  S  S  L  A  Q   : G  I  P  *  K  N  A  S  *  S  N  *  S  C  L  T  A  S  S  I  F  T  K  S  S  L  Y  C   : T  R  S  M  C  T  F  V  L  *  *  A  S  *  A  Q  C  P  S  P  *  W  T  S  I  S  T  S  F  Q  L  *  T  R   : V  N  W  S  F  T  *  F  G  Q  Q  A  D  P  *  A  C  V  E  A  T  W  F  E  F  P  I  S  W  C  D  V  I  V  L  M :   F  L  I  R  R  I  Q  I  G  V  *  S  D  K  Y  C  N  V  *  L  S  R  F  P  *  E  T  F  W  S  T  R  T  C  S  F  G  L  *  L  Y  L  Y  A  S  C  F  *  L  Y  F  Y  F  L  :  F  K  M  L  A  *  I  S  C  N  Y  A  V  V  Y  E  K  Q  E  L  L  D  T  R  D  D  *  C  L  Q  C  T  L  K  *  L  Q  L  H  L  N  V  A  N  D  F  Y  T  L  K  W  L  Y  L  L  P  L  P  S  V  R  *  F  *  L  N  Y  Y  K  F  T  T  C  C  D  L  S  D  H  K  K  *  I  S  T  A  F  I  *  L  I  I  E  S  M  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64019" stop="64222"/>
                    <exon start="65122" stop="65214"/>
                    <exon start="65373" stop="65432"/>
                    <exon start="65508" stop="65780"/>
                    <exon start="65857" stop="65931"/>
                    <exon start="66008" stop="66064"/>
                    <exon start="66533" stop="66673"/>
                    <exon start="66775" stop="66825"/>
                    <exon start="66907" stop="67002"/>
                    <exon start="67136" stop="67219"/>
                    <exon start="67318" stop="67419"/>
                    <exon start="68357" stop="68452"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1329</number_coding_nucleotides>
                  <number_encoded_amino_acids>443</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRRREHMASIPLGPQHHNPPENHHHHHLQPPPQLVQQQQQQPVNRELGGGGGAAVRNAGARPEMESEKEMSAAVVEGNGAVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQLMRLMDHPNVITLKHCFFSTTSRDELFLNLVMDYVPESLYKVLKHYSNSNQRMPLIYVKLYMYQIFRGLAYIHNVPRICHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVNGEANISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHSFFDELREPNARLPNGRPFPPLFNFKQELTGASPDLVNKLIPEHVWRQLGLNFPFPGAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68728" stop="68828"/>
                    <exon start="69525" stop="69624"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADFLERPSGALGLVALGCSYIYMQVVFSSIFIFYSKCWHKYHVTTLLYMKNRSYLTPEMINVCNVP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="65023" e_stop="65038"/>
            <exon e_start="65122" e_stop="65214"/>
            <exon e_start="65373" e_stop="65432"/>
            <exon e_start="65508" e_stop="65780"/>
            <exon e_start="65857" e_stop="65931"/>
            <exon e_start="66008" e_stop="66064"/>
            <exon e_start="66533" e_stop="66673"/>
            <exon e_start="66775" e_stop="66825"/>
            <exon e_start="66907" e_stop="67002"/>
            <exon e_start="67136" e_stop="67219"/>
            <exon e_start="67318" e_stop="67419"/>
            <exon e_start="68357" e_stop="68857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.843" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.957" e_score="0.989"/>
          <exon-intron don_prob="0.996" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.828" e_score="0.993"/>
          <exon-intron don_prob="0.892" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.051" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65023" e_stop="65038" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.843" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65039" i_stop="65121" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="65122" e_stop="65214" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.957">
            <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65373" e_stop="65432" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.944">
            <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="65508" e_stop="65780" e_length="273"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.828">
            <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65857" e_stop="65931" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.892" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66008" e_stop="66064" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.974">
            <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="66533" e_stop="66673" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="66674" i_stop="66774" i_length="101"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66775" e_stop="66825" e_length="51"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.051">
            <gDNA_intron_boundary i_start="66826" i_stop="66906" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="66907" e_stop="67002" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.973">
            <gDNA_intron_boundary i_start="67003" i_stop="67135" i_length="133"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67136" e_stop="67219" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67318" e_stop="67419" e_length="102"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937"/>
          </intron>
          <exon e_serial="12" e_score="0.928">
            <gDNA_exon_boundary e_start="68357" e_stop="68857" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65023" stop="65038"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65192" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65762" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65864" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66014" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66040" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66668" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548601" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67159" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67214" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424325" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67325" stop="67419"/>
              <exon start="68357" stop="68814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67338" stop="67419"/>
              <exon start="68357" stop="68631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68403" stop="68845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68460" stop="68814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232669" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68473" stop="68809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232169" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCTGACAGGTTATG : GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG : ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG : GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG : ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTG : GTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTG : GTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAG : CCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAG : GTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAG : GTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA : CTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG : TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCTATTTTTATTTTTTAATATAAGGCATATATGAATTATCTCTTCT</gDNA_template>
            <first_frame> P  L  T  G  Y   : G  N  V  S  C  C  C  *  G  *  W  C  R  H  W  S  H  N  F  H  H  H  W  R  Q  E  W  R  T  K  K   : D  H  Q  L  Y  G  R  A  S  C  R  Y  R  V  L  W  D  S  V  S   : G  K  M  L  G  N  W  R  D  C  G  H  K  E  G  F  T  G  Q  T  V  *  K  S  *  T  T  T  D  A  L  D  G  S  P  K  C  H  Y  S  K  A  L  L  L  F  H  D  *  *  R  *  A  F  S  *  F  G  H  G  L  C  P  *  K  F  I  Q  G  F  K  A  L  *  Q  F  K  S  K  D  A  T  H  I  C  Q  T  L  H  V  S   : D  I  Q  R  A  G  L  H  S  *  C  S  K  D  L  P  *  R  C  E  T  S  K  S  F   : G  *  S  S  D  P  S  S  Q  A  V  *  F  W  K  C  K  S  P   : G  K  W  *  S  K  Y  F  I  H  L  L  S  L  L  Q  S  S  R  T  H  I  W  C  H  R  V  Y  N  I  N  *  Y  L  V  S  R  L  C  P  C  *  A  S  S  G  A   : A  A  L  S  W  R  K  C  S  R  S  T  G  G  D  H  Q   : G  P  W  Y  S  Y  S  G  R  N  S  M  Y  E  P  K  L  H  R  F  Q  I  P  T  D  K  S  S  S  L  A  Q   : G  I  P  *  K  N  A  S  *  S  N  *  S  C  L  T  A  S  S  I  F  T  K  S  S  L  Y  C   : T  R  S  M  C  T  F  V  L  *  *  A  S  *  A  Q  C  P  S  P  *  W  T  S  I  S  T  S  F  Q  L  *  T  R   : V  N  W  S  F  T  *  F  G  Q  Q  A  D  P  *  A  C  V  E  A  T  W  F  E  F  P  I  S  W  C  D  V  I  V  L  M  *  Y  R  V  G  V  S  E  K  I  Y  R  E  S  L  W  I  N  V  T  M  H  F  G  V  T  S  G  Y  A  R  M  *  K  L  Y  A  Y  S  R  C  L  A  Y  K  K  *  S  C  L  Y  L  C  P  L  L  A  N  S  R  P  V  A  S  F  V  H  C  F  *  *  E  E  F  R  *  E  Y  K  V  I  N  I  V  M  S  S  *  A  D  F  L  E  R  P  S  G  A  L  G  L  V  A  L  G  C  S  Y  I  Y  M  Q  V  V  F  S  S  I  F  I  F  *  Y  K  A  Y  M  N  Y  L  F  </first_frame>
            <second_frame>  L  *  Q  V  M  :  E  M  S  A  A  V  V  E  G  N  G  A  V  T  G  H  I  I  S  T  T  I  G  G  K  N  G  E  P  K  R  :  T  I  S  Y  M  A  E  R  V  V  G  T  G  S  F  G  I  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  L  M  R  L  M  D  H  P  N  V  I  T  L  K  H  C  F  F  S  T  T  S  R  D  E  L  F  L  N  L  V  M  D  Y  V  P  E  S  L  Y  K  V  L  K  H  Y  S  N  S  N  Q  R  M  P  L  I  Y  V  K  L  Y  M  Y  Q  :  I  F  R  G  L  A  Y  I  H  N  V  P  R  I  C  H  R  D  V  K  P  Q  N  L  L  :  V  D  P  L  T  H  Q  V  K  L  C  D  F  G  S  A  K  V  L  :  V  N  G  E  A  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  T  S  I  D  I  W  S  A  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  N  A  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  R  C  M  N  P  N  Y  T  D  F  R  F  P  Q  I  K  A  H  P  W  H  K  :  V  F  H  K  R  M  P  P  E  A  I  D  L  A  S  R  L  L  Q  Y  S  P  S  L  R  C  T  A  :  L  E  A  C  A  H  S  F  F  D  E  L  R  E  P  N  A  R  L  P  N  G  R  P  F  P  P  L  F  N  F  K  Q  E  :  L  T  G  A  S  P  D  L  V  N  K  L  I  P  E  H  V  W  R  Q  L  G  L  N  F  P  F  P  G  A  T  *  L  Y  *  C  N  I  E  L  V  Y  Q  K  K  Y  I  G  S  P  C  G  L  M  *  P  C  I  L  A  *  P  V  A  M  H  A  C  K  S  C  M  H  I  A  A  V  W  L  T  R  S  D  P  V  S  T  C  V  L  F  *  L  I  A  D  L  L  P  L  L  Y  I  V  F  D  K  K  N  S  D  R  S  I  K  *  *  I  L  *  C  L  V  K  Q  I  S  L  R  D  L  L  E  H  *  D  L  *  L  W  V  V  V  I  F  I  C  K  L  F  L  A  L  F  L  F  F  N  I  R  H  I  *  I  I  S  S </second_frame>
            <third_frame>   S  D  R  L  W :   K  C  Q  L  L  L  L  R  V  M  V  P  S  L  V  T  *  F  P  P  P  L  E  A  R  M  E  N  Q  K  G :   P  S  V  I  W  Q  S  E  L  S  V  Q  G  P  L  G  *  C  F  R :   Q  N  A  W  K  L  E  R  L  W  P  *  R  R  F  Y  R  T  N  G  I  K  I  V  N  Y  N  *  C  A  *  W  I  T  Q  M  S  L  L  *  S  T  A  S  F  P  R  L  V  E  M  S  F  F  L  I  W  S  W  I  M  S  L  K  V  Y  T  R  F  *  S  T  I  A  I  Q  I  K  G  C  H  S  Y  M  S  N  F  T  C  I  R :   Y  S  E  G  W  L  T  F  I  M  F  Q  G  F  A  I  E  M  *  N  L  K  I  F  W :   L  I  L  *  P  I  K  S  S  C  V  I  L  E  V  Q  K  S  W :   *  M  V  K  Q  I  F  H  T  F  A  L  A  T  T  E  L  Q  N  S  Y  L  V  P  Q  S  I  Q  H  Q  L  I  F  G  Q  Q  A  V  S  L  L  S  F  F  W  G  S :   R  S  F  L  A  K  M  Q  *  I  N  W  W  R  S  S  R :   S  L  V  L  L  L  G  K  K  F  D  V  *  T  Q  T  T  Q  I  S  D  S  H  R  *  K  L  I  L  G  T  R :   Y  S  I  K  E  C  L  L  K  Q  L  I  L  P  H  G  F  F  N  I  H  Q  V  F  A  V  L  H :   *  K  H  V  H  I  R  S  L  M  S  F  V  S  P  M  P  V  S  L  M  D  V  H  F  H  L  F  S  T  L  N  K  S :   *  L  E  L  H  L  I  W  S  T  S  *  S  L  S  M  C  G  G  N  L  V  *  I  S  H  F  L  V  R  R  N  C  T  N  V  I  *  S  W  C  I  R  K  N  I  *  G  V  L  V  D  *  C  N  H  A  F  W  R  N  Q  W  L  C  T  H  V  K  V  V  C  I  *  P  L  F  G  L  Q  E  V  I  L  S  L  L  V  S  S  F  S  *  *  Q  T  C  C  L  F  C  T  L  F  L  I  R  R  I  Q  I  G  V  *  S  D  K  Y  C  N  V  *  L  S  R  F  P  *  E  T  F  W  S  T  R  T  C  S  F  G  L  *  L  Y  L  Y  A  S  C  F  *  L  Y  F  Y  F  L  I  *  G  I  Y  E  L  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65030" stop="65038"/>
                    <exon start="65122" stop="65214"/>
                    <exon start="65373" stop="65432"/>
                    <exon start="65508" stop="65780"/>
                    <exon start="65857" stop="65931"/>
                    <exon start="66008" stop="66064"/>
                    <exon start="66533" stop="66673"/>
                    <exon start="66775" stop="66825"/>
                    <exon start="66907" stop="67002"/>
                    <exon start="67136" stop="67219"/>
                    <exon start="67318" stop="67419"/>
                    <exon start="68357" stop="68452"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVMEMSAAVVEGNGAVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQLMRLMDHPNVITLKHCFFSTTSRDELFLNLVMDYVPESLYKVLKHYSNSNQRMPLIYVKLYMYQIFRGLAYIHNVPRICHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVNGEANISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHSFFDELREPNARLPNGRPFPPLFNFKQELTGASPDLVNKLIPEHVWRQLGLNFPFPGAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="73852" PGL_stop="69495"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73852" e_stop="73563"/>
            <exon e_start="73201" e_stop="73116"/>
            <exon e_start="72010" e_stop="71804"/>
            <exon e_start="71680" e_stop="71575"/>
            <exon e_start="71460" e_stop="71356"/>
            <exon e_start="71285" e_stop="71113"/>
            <exon e_start="70550" e_stop="70391"/>
            <exon e_start="70289" e_stop="70194"/>
            <exon e_start="70099" e_stop="70005"/>
            <exon e_start="69892" e_stop="69495"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.513" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73852" e_stop="73563" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73201" e_stop="73116" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.975">
            <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72010" e_stop="71804" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.513" acc_prob="0.865">
            <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71680" e_stop="71575" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.790">
            <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71460" e_stop="71356" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71285" e_stop="71113" e_length="173"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.984">
            <gDNA_intron_boundary i_start="71112" i_stop="70551" i_length="562"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70550" e_stop="70391" e_length="160"/>
          </exon>
          <intron i_serial="7" don_prob="0.934" acc_prob="0.927">
            <gDNA_intron_boundary i_start="70390" i_stop="70290" i_length="101"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70289" e_stop="70194" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.904">
            <gDNA_intron_boundary i_start="70193" i_stop="70100" i_length="94"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="70099" e_stop="70005" e_length="95"/>
          </exon>
          <intron i_serial="9" don_prob="0.970" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70004" i_stop="69893" i_length="112"/>
          </intron>
          <exon e_serial="10" e_score="0.978">
            <gDNA_exon_boundary e_start="69892" e_stop="69495" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73852" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73822" stop="73563"/>
              <exon start="73201" stop="73116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73797" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73797" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73789" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71356"/>
              <exon start="71285" stop="71249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73789" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73787" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73782" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73781" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73779" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73776" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71356"/>
              <exon start="71285" stop="71205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73774" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73770" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73768" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73768" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73768" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73768" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73737" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71356"/>
              <exon start="71285" stop="71113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73734" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71356"/>
              <exon start="71285" stop="71229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73726" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71356"/>
              <exon start="71285" stop="71113"/>
              <exon start="70550" stop="70493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73683" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73200" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71356"/>
              <exon start="71285" stop="71113"/>
              <exon start="70550" stop="70399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71356"/>
              <exon start="71285" stop="71150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71984" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71356"/>
              <exon start="71285" stop="71113"/>
              <exon start="70550" stop="70475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71984" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71356"/>
              <exon start="71285" stop="71128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71868" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71356"/>
              <exon start="71285" stop="71113"/>
              <exon start="70550" stop="70391"/>
              <exon start="70289" stop="70272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71638" stop="71575"/>
              <exon start="71460" stop="71356"/>
              <exon start="71285" stop="71113"/>
              <exon start="70550" stop="70391"/>
              <exon start="70289" stop="70197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71453" stop="71356"/>
              <exon start="71285" stop="71113"/>
              <exon start="70550" stop="70391"/>
              <exon start="70289" stop="70194"/>
              <exon start="70099" stop="70005"/>
              <exon start="69892" stop="69804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71189" stop="71113"/>
              <exon start="70550" stop="70391"/>
              <exon start="70289" stop="70194"/>
              <exon start="70099" stop="70005"/>
              <exon start="69892" stop="69495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419679" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71162" stop="71113"/>
              <exon start="70550" stop="70391"/>
              <exon start="70289" stop="70194"/>
              <exon start="70099" stop="70005"/>
              <exon start="69892" stop="69752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70472" stop="70391"/>
              <exon start="70289" stop="70194"/>
              <exon start="70099" stop="70005"/>
              <exon start="69892" stop="69524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70472" stop="70391"/>
              <exon start="70289" stop="70194"/>
              <exon start="70099" stop="70005"/>
              <exon start="69892" stop="69526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70417" stop="70391"/>
              <exon start="70289" stop="70194"/>
              <exon start="70099" stop="70005"/>
              <exon start="69892" stop="69581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70212" stop="70194"/>
              <exon start="70099" stop="70005"/>
              <exon start="69892" stop="69546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413000" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70040" stop="70005"/>
              <exon start="69892" stop="69533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218124" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTACTCTTACGTCTCCTATTTATAAAGTCCCATCTCTATCAACCGCCTCTACAAACACGCCATTTTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTT : GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATAT : GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA : TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG : AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAG : GTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAG : TGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAG : GGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAG : ATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAG : TATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACATGTTGTAAACTTGTAATAGTTGAGTTAAAACTATCGTACGGAGGGGAGGGGTAATAAATAGAGCCATTTTAAGGTGTAGAAGTCATTAGCAACGTTGAGGTGGAGTTGTAGTTATTTTAGGGTACATTGCAGACATTAATCATCTCTGGTGTCAAGTAGCTCCTGTTTTTCATATACAACAGCGTAGTTACATGATATTTATGCCAGCATTTTGAAGTATTGTTGCTGTTTTACAGCGTCACGGAT</gDNA_template>
            <first_frame> T  T  L  T  S  P  I  Y  K  V  P  S  L  S  T  A  S  T  N  T  P  F  S  S  P  I  W  P  F  L  Y  I  L  S  P  F  R  P  W  R  C  V  P  L  F  P  V  V  N  *  N  L  A  R  R  R  S  E  R  D  P  C  R  R  G  G  E  M  L  N  R  L  L  K  I  L  S  S  A  *  L  K  L  F  S  P  I  L  A  L  T  K  S  M  L  A  L :   E  L  T  G  M  T  M  E  N  P  W  Y  W  S  V  L  E  K  Q  S  E  G  *  L  V  V  S  I   : W  N  I  F  L  W  E  V  V  S  T  *  S  R  S  R  *  S  *  P  M  E  R  T  Q  T  *  *  K  I  N  A  L  L  Q  F  K  H  Y  L  E  Q  A  H  A  E  F  L  R  T  S  K  S  A  F  V  L  I  H  R  F  I  F  L  F  L  H  G  L   : I  I  I  T  F  G  E  M  L  T  S  L  R  K  H  I  T  I  I  M  L  N  Q  R  A  W  T  L  L  Q  *  W  M  I  *  R :   M  P  Q  K  D  H  S  F  C  F  M  L  V  L  I  I  L  L  G  W  I  R  Q  R  N  N  G  G  R  S  R  T  S  S  R :   *  R  D  I  L  L  C  L  T  W  H  I  K  D  L  Q  V  G  I  Q  R  R  M  L  K  Q  S  G  Y  F  L  R  M  V  I  R  *  H  V  P  N  H  M  Q  K  I  W  G  Y  M  V  R  E  L  V  A  *   : V  L  S  V  R  M  K  N  K  Q  W  Q  *  K  V  S  C  S  N  L  P  G  P  C  T  V  I  H  L  F  M  V  L  L  L  F  L  Q  S  L  E  I  Q  T  *  K  L  Y  G  S  G  K  *  R :   A  W  L  I  V  S  S  G  *  E  L  L  *  G  E  I  L  R  S  W  A  H  L  Y  L  G  N  T  *  P  T  R :   L  A  C  S  A  T  V  G  *  H  R  N  K  *  T  D  *  Q  K  S  I  T  S  T  *  L  V  M  V  V  S   : V  W  Q  E  L  L  L  E  M  L  V  T  W  Q  T  L  F  M  R  L  L  N  L  L  K  R  *  R  H  G  F  N  N  Q  L  N  K  G  C  G  N  S  F  F  V  I  G  K  I  T  T  C  C  K  L  V  I  V  E  L  K  L  S  Y  G  G  E  G  *  *  I  E  P  F  *  G  V  E  V  I  S  N  V  E  V  E  L  *  L  F  *  G  T  L  Q  T  L  I  I  S  G  V  K  *  L  L  F  F  I  Y  N  S  V  V  T  *  Y  L  C  Q  H  F  E  V  L  L  L  F  Y  S  V  T  D </first_frame>
            <second_frame>  L  L  L  R  L  L  F  I  K  S  H  L  Y  Q  P  P  L  Q  T  R  H  F  P  L  L  F  G  H  F  S  I  S  S  L  R  S  G  H  G  D  A  C  R  Y  F  R  S  S  T  K  T  *  L  V  V  V  R  S  A  I  P  V  V  V  V  A  K  C  *  T  G  S  *  R  S  Y  P  R  R  N  *  S  F  S  R  R  S  *  P  *  Q  S  Q  C  W  R   : W  S  L  Q  G  *  Q  W  K  T  R  G  T  G  V  C  *  R  S  R  A  K  D  S  W  W  F  Q  Y  :  G  I  S  S  Y  G  R  *  C  Q  H  D  P  G  V  A  E  V  S  L  W  R  E  L  R  L  D  K  R  *  T  H  C  C  N  S  S  I  I  W  N  R  R  M  Q  N  F  C  G  L  P  K  A  L  L  S  *  F  T  D  L  Y  S  C  S  Y  M  V  *  :  S  S  *  H  L  E  R  C  S  R  P  *  E  N  I  S  L  L  S  C  *  I  K  G  L  G  L  C  C  N  D  G  *  Y  K   : E  C  P  K  R  I  I  L  S  A  S  C  L  C  S  *  S  Y  W  G  G  S  D  R  G  T  M  E  G  D  L  A  P  V  Q   : G  E  G  T  F  C  F  V  *  H  G  I  S  R  I  C  K  W  V  S  R  E  G  C  *  S  N  Q  D  I  S  *  G  W  S  S  D  S  M  C  P  I  I  C  K  K  Y  G  A  I  W  S  E  S  W  L  P  K  :  C  C  L  *  G  *  K  T  S  S  G  S  E  K  S  V  A  A  T  C  Q  A  H  V  Q  *  S  T  S  S  W  C  S  C  C  F  Y  N  P  W  R  S  K  L  E  N  S  M  A  R  G  S  E   : G  H  G  *  S  Y  H  R  D  E  N  C  F  K  G  K  S  *  E  V  G  L  T  S  I  L  G  T  H  N  Q  P   : D  W  H  V  L  L  Q  W  D  D  T  G  T  S  R  P  I  D  K  R  V  S  H  L  H  D  S  *  W  S  Y  Q  :  Y  G  R  S  Y  Y  W  K  C  W  L  L  G  K  R  Y  S  *  G  Y  *  I  C  L  S  V  N  V  M  D  S  I  I  S  *  I  K  A  V  E  I  H  F  L  *  S  E  R  S  Q  H  V  V  N  L  *  *  L  S  *  N  Y  R  T  E  G  R  G  N  K  *  S  H  F  K  V  *  K  S  L  A  T  L  R  W  S  C  S  Y  F  R  V  H  C  R  H  *  S  S  L  V  S  S  S  S  C  F  S  Y  T  T  A  *  L  H  D  I  Y  A  S  I  L  K  Y  C  C  C  F  T  A  S  R   </second_frame>
            <third_frame>   Y  S  Y  V  S  Y  L  *  S  P  I  S  I  N  R  L  Y  K  H  A  I  F  L  S  Y  L  A  I  S  L  Y  P  L  S  V  P  A  M  A  M  R  A  A  I  S  G  R  Q  L  K  L  S  S  S  S  F  G  A  R  S  L  S  S  W  W  R  N  V  E  P  A  P  K  D  P  I  L  G  V  T  E  A  F  L  A  D  P  S  P  D  K  V  N  V  G  V  :  G  A  Y  R  D  D  N  G  K  P  V  V  L  E  C  V  R  E  A  E  R  R  I  A  G  G  F  N  M :   E  Y  L  P  M  G  G  S  V  N  M  I  Q  E  S  L  K  L  A  Y  G  E  N  S  D  L  I  K  D  K  R  I  A  A  I  Q  A  L  S  G  T  G  A  C  R  I  F  A  D  F  Q  K  R  F  C  P  D  S  Q  I  Y  I  P  V  P  T  W  S  N :   H  H  N  I  W  R  D  A  H  V  P  E  K  T  Y  H  Y  Y  H  A  E  S  K  G  L  D  F  A  A  M  M  D  D  I  K  :  N  A  P  K  G  S  F  F  L  L  H  A  C  A  H  N  P  T  G  V  D  P  T  E  E  Q  W  R  E  I  S  H  Q  F  K  :  V  K  G  H  F  A  L  F  D  M  A  Y  Q  G  F  A  S  G  Y  P  E  K  D  A  K  A  I  R  I  F  L  E  D  G  H  P  I  A  C  A  Q  S  Y  A  K  N  M  G  L  Y  G  Q  R  V  G  C  L  S :   V  V  C  E  D  E  K  Q  A  V  A  V  K  S  Q  L  Q  Q  L  A  R  P  M  Y  S  N  P  P  L  H  G  A  L  V  V  S  T  I  L  G  D  P  N  L  K  T  L  W  L  G  E  V  K  :  G  M  A  D  R  I  I  G  M  R  T  A  L  R  G  N  L  E  K  L  G  S  P  L  S  W  E  H  I  T  N  Q  :  I  G  M  F  C  Y  S  G  M  T  P  E  Q  V  D  R  L  T  K  E  Y  H  I  Y  M  T  R  N  G  R  I  S :   M  A  G  V  T  T  G  N  V  G  Y  L  A  N  A  I  H  E  V  T  K  S  A  *  A  L  T  S  W  I  Q  *  S  A  K  *  R  L  W  K  F  I  F  C  D  R  K  D  H  N  M  L  *  T  C  N  S  *  V  K  T  I  V  R  R  G  G  V  I  N  R  A  I  L  R  C  R  S  H  *  Q  R  *  G  G  V  V  V  I  L  G  Y  I  A  D  I  N  H  L  W  C  Q  V  A  P  V  F  H  I  Q  Q  R  S  Y  M  I  F  M  P  A  F  *  S  I  V  A  V  L  Q  R  H  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73826" stop="73563"/>
                    <exon start="73201" stop="73116"/>
                    <exon start="72010" stop="71804"/>
                    <exon start="71680" stop="71575"/>
                    <exon start="71460" stop="71356"/>
                    <exon start="71285" stop="71113"/>
                    <exon start="70550" stop="70391"/>
                    <exon start="70289" stop="70194"/>
                    <exon start="70099" stop="70005"/>
                    <exon start="69892" stop="69820"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1362</number_coding_nucleotides>
                  <number_encoded_amino_acids>454</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPISINRLYKHAIFLSYLAISLYPLSVPAMAMRAAISGRQLKLSSSSFGARSLSSWWRNVEPAPKDPILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAERRIAGGFNMEYLPMGGSVNMIQESLKLAYGENSDLIKDKRIAAIQALSGTGACRIFADFQKRFCPDSQIYIPVPTWSNHHNIWRDAHVPEKTYHYYHAESKGLDFAAMMDDIKNAPKGSFFLLHACAHNPTGVDPTEEQWREISHQFKVKGHFALFDMAYQGFASGYPEKDAKAIRIFLEDGHPIACAQSYAKNMGLYGQRVGCLSVVCEDEKQAVAVKSQLQQLARPMYSNPPLHGALVVSTILGDPNLKTLWLGEVKGMADRIIGMRTALRGNLEKLGSPLSWEHITNQIGMFCYSGMTPEQVDRLTKEYHIYMTRNGRISMAGVTTGNVGYLANAIHEVTKSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="82124" PGL_stop="78816"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82124" e_stop="81912"/>
            <exon e_start="81510" e_stop="81446"/>
            <exon e_start="81360" e_stop="80742"/>
            <exon e_start="79825" e_stop="79680"/>
            <exon e_start="79565" e_stop="79467"/>
            <exon e_start="79070" e_stop="78816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="0.991"/>
          <exon-intron don_prob="0.790" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.039" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.459" e_score="1.000"/>
          <exon-intron don_prob="0.227" acc_prob="0.408" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="82124" e_stop="81912" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="81911" i_stop="81511" i_length="401"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81510" e_stop="81446" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.790" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81445" i_stop="81361" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81360" e_stop="80742" e_length="619"/>
          </exon>
          <intron i_serial="3" don_prob="0.939" acc_prob="0.039">
            <gDNA_intron_boundary i_start="80741" i_stop="79826" i_length="916"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79825" e_stop="79680" e_length="146"/>
          </exon>
          <intron i_serial="4" don_prob="0.735" acc_prob="0.459">
            <gDNA_intron_boundary i_start="79679" i_stop="79566" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79565" e_stop="79467" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.227" acc_prob="0.408">
            <gDNA_intron_boundary i_start="79466" i_stop="79071" i_length="396"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79070" e_stop="78816" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82124" stop="81912"/>
              <exon start="81510" stop="81446"/>
              <exon start="81360" stop="80821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80831" stop="80742"/>
              <exon start="79825" stop="79680"/>
              <exon start="79565" stop="79467"/>
              <exon start="79070" stop="78816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80831" stop="80742"/>
              <exon start="79825" stop="79680"/>
              <exon start="79565" stop="79467"/>
              <exon start="79070" stop="78816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80820" stop="80742"/>
              <exon start="79825" stop="79680"/>
              <exon start="79565" stop="79467"/>
              <exon start="79070" stop="78824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGACATGCTGTTGAAACTGTGAAAAGTTATTACAACAATAACAACAACATATACCTAATGGGGTCCGGGCAGGGTAGAGTGTATGCAAACCTTACCCCTACCTCATGGAGGTAGAGAGGAGGTTTCCGGAAGACCCTCGGATCAAGACTTATTATGCGGAAGTAAATGCATTCTTTATTACAGATGCGAAACAATTAGGTGGGCCAAAACT : ACTTTAATGCGGTTGCGCTATGGGTTACTACTTGAACAGAAGTTTGCCTATTGAAGCTTGAAGTT : GGGACTGAGCAATTCAAAGATTTGGGACAAGTAAGATAGCTTCCAAAGCTTCTTCTATCAATTGCCATGAACTTAGTATGGTGAGTTTAAATTTATATTTTCTTTCTCGTTCACTTAGTTGAGCTTTCCTTGGTAGGAAAAGAAAGGACATTTATTTCTCTCAGATTTTGTTACTATATAGTAATTCTCCTTGACACCTGACATTTTGTGAATTTTCTCGGTAAGATAGCACTTTGCTATCTTGATTTGAGAAACTTATACACCTTGGAGTAAGCAAGTGTACAAGTAGAAGTTACAATTTTTTTCCATATCAGGAAAGGAATTAGCAGCTAAATACAGTTAAAAGGGTCAGGTGTAATTTCCGCCTTCTTTTGTATTGCAATTTGCATGTCCTTTCCAAGCCAATGACTGAGTTTAGTAGTATTATATCAAAGCTTTTACATCCACTTACTCTCTAAGTTGATTCTTACATGCAACTTTGTCCTTAAATTTGCAAGAATGACAGTATTTGAGATTGAAAAGATTCAATAACACCAGGAAAGCCCAAGGCTTTAAGAAAAAGTAGTGGGTTGGATCCACTTCAGTCACATTCCGTAGCAGCTTGCTGGCGTCCTTTCAG : AATGATCGTTAGAATGAGTCATTCTAAGGCCATTTTTATATCTAAATGGAAGGGATTATTGGTATTAATCATAGAGAAATTCATCCGAGGATGACTTAACTGAGATGACTCATCCTATCAGGCACAAATCAAACATGCACTTTGAG : TTCTAATAGACTCCTCTGAATCCAAGTGAAACCTAAGAGCTGTCAATGAAGCAGATTAAACAAATGAAGAGAGATGCTAGACTCCAGCCAGACCAAGAG : GAAAAATTATGCAATTCATATATATGAATTGTTGCGGAAGGTGCATCAAGTTGGCTGTGTTGAAAATGACTGGAAGATTTCTGCCCATAATATATCGATGTGAATGACCACATCATGAGATTTGACTTTTGTCATACCAAAAACAGCTGTGAAACATTTCATTTGGTATGGCAAAATGAGTATAATTGACTAACAGTATTGTTCTATGTATTACAACATGAACAGAGAAATTTGAGAGTGTATTTTTGTTATGGC</gDNA_template>
            <first_frame> D  D  M  L  L  K  L  *  K  V  I  T  T  I  T  T  T  Y  T  *  W  G  P  G  R  V  E  C  M  Q  T  L  P  L  P  H  G  G  R  E  E  V  S  G  R  P  S  D  Q  D  L  L  C  G  S  K  C  I  L  Y  Y  R  C  E  T  I  R  W  A  K  T  :  T  L  M  R  L  R  Y  G  L  L  L  E  Q  K  F  A  Y  *  S  L  K  L :   G  L  S  N  S  K  I  W  D  K  *  D  S  F  Q  S  F  F  Y  Q  L  P  *  T  *  Y  G  E  F  K  F  I  F  S  F  S  F  T  *  L  S  F  P  W  *  E  K  K  G  H  L  F  L  S  D  F  V  T  I  *  *  F  S  L  T  P  D  I  L  *  I  F  S  V  R  *  H  F  A  I  L  I  *  E  T  Y  T  P  W  S  K  Q  V  Y  K  *  K  L  Q  F  F  S  I  S  G  K  E  L  A  A  K  Y  S  *  K  G  Q  V  *  F  P  P  S  F  V  L  Q  F  A  C  P  F  Q  A  N  D  *  V  *  *  Y  Y  I  K  A  F  T  S  T  Y  S  L  S  *  F  L  H  A  T  L  S  L  N  L  Q  E  *  Q  Y  L  R  L  K  R  F  N  N  T  R  K  A  Q  G  F  K  K  K  *  W  V  G  S  T  S  V  T  F  R  S  S  L  L  A  S  F  Q  :  N  D  R  *  N  E  S  F  *  G  H  F  Y  I  *  M  E  G  I  I  G  I  N  H  R  E  I  H  P  R  M  T  *  L  R  *  L  I  L  S  G  T  N  Q  T  C  T  L  S :   S  N  R  L  L  *  I  Q  V  K  P  K  S  C  Q  *  S  R  L  N  K  *  R  E  M  L  D  S  S  Q  T  K  R :   K  N  Y  A  I  H  I  Y  E  L  L  R  K  V  H  Q  V  G  C  V  E  N  D  W  K  I  S  A  H  N  I  S  M  *  M  T  T  S  *  D  L  T  F  V  I  P  K  T  A  V  K  H  F  I  W  Y  G  K  M  S  I  I  D  *  Q  Y  C  S  M  Y  Y  N  M  N  R  E  I  *  E  C  I  F  V  M   </first_frame>
            <second_frame>  M  T  C  C  *  N  C  E  K  L  L  Q  Q  *  Q  Q  H  I  P  N  G  V  R  A  G  *  S  V  C  K  P  Y  P  Y  L  M  E  V  E  R  R  F  P  E  D  P  R  I  K  T  Y  Y  A  E  V  N  A  F  F  I  T  D  A  K  Q  L  G  G  P  K  L :   L  *  C  G  C  A  M  G  Y  Y  L  N  R  S  L  P  I  E  A  *  S   : W  D  *  A  I  Q  R  F  G  T  S  K  I  A  S  K  A  S  S  I  N  C  H  E  L  S  M  V  S  L  N  L  Y  F  L  S  R  S  L  S  *  A  F  L  G  R  K  R  K  D  I  Y  F  S  Q  I  L  L  L  Y  S  N  S  P  *  H  L  T  F  C  E  F  S  R  *  D  S  T  L  L  S  *  F  E  K  L  I  H  L  G  V  S  K  C  T  S  R  S  Y  N  F  F  P  Y  Q  E  R  N  *  Q  L  N  T  V  K  R  V  R  C  N  F  R  L  L  L  Y  C  N  L  H  V  L  S  K  P  M  T  E  F  S  S  I  I  S  K  L  L  H  P  L  T  L  *  V  D  S  Y  M  Q  L  C  P  *  I  C  K  N  D  S  I  *  D  *  K  D  S  I  T  P  G  K  P  K  A  L  R  K  S  S  G  L  D  P  L  Q  S  H  S  V  A  A  C  W  R  P  F  R :   M  I  V  R  M  S  H  S  K  A  I  F  I  S  K  W  K  G  L  L  V  L  I  I  E  K  F  I  R  G  *  L  N  *  D  D  S  S  Y  Q  A  Q  I  K  H  A  L  *   : V  L  I  D  S  S  E  S  K  *  N  L  R  A  V  N  E  A  D  *  T  N  E  E  R  C  *  T  P  A  R  P  R   : G  K  I  M  Q  F  I  Y  M  N  C  C  G  R  C  I  K  L  A  V  L  K  M  T  G  R  F  L  P  I  I  Y  R  C  E  *  P  H  H  E  I  *  L  L  S  Y  Q  K  Q  L  *  N  I  S  F  G  M  A  K  *  V  *  L  T  N  S  I  V  L  C  I  T  T  *  T  E  K  F  E  S  V  F  L  L  W  </second_frame>
            <third_frame>   *  H  A  V  E  T  V  K  S  Y  Y  N  N  N  N  N  I  Y  L  M  G  S  G  Q  G  R  V  Y  A  N  L  T  P  T  S  W  R  *  R  G  G  F  R  K  T  L  G  S  R  L  I  M  R  K  *  M  H  S  L  L  Q  M  R  N  N  *  V  G  Q  N   : Y  F  N  A  V  A  L  W  V  T  T  *  T  E  V  C  L  L  K  L  E  V  :  G  T  E  Q  F  K  D  L  G  Q  V  R  *  L  P  K  L  L  L  S  I  A  M  N  L  V  W  *  V  *  I  Y  I  F  F  L  V  H  L  V  E  L  S  L  V  G  K  E  R  T  F  I  S  L  R  F  C  Y  Y  I  V  I  L  L  D  T  *  H  F  V  N  F  L  G  K  I  A  L  C  Y  L  D  L  R  N  L  Y  T  L  E  *  A  S  V  Q  V  E  V  T  I  F  F  H  I  R  K  G  I  S  S  *  I  Q  L  K  G  S  G  V  I  S  A  F  F  C  I  A  I  C  M  S  F  P  S  Q  *  L  S  L  V  V  L  Y  Q  S  F  Y  I  H  L  L  S  K  L  I  L  T  C  N  F  V  L  K  F  A  R  M  T  V  F  E  I  E  K  I  Q  *  H  Q  E  S  P  R  L  *  E  K  V  V  G  W  I  H  F  S  H  I  P  *  Q  L  A  G  V  L  S   : E  *  S  L  E  *  V  I  L  R  P  F  L  Y  L  N  G  R  D  Y  W  Y  *  S  *  R  N  S  S  E  D  D  L  T  E  M  T  H  P  I  R  H  K  S  N  M  H  F  E  :  F  *  *  T  P  L  N  P  S  E  T  *  E  L  S  M  K  Q  I  K  Q  M  K  R  D  A  R  L  Q  P  D  Q  E  :  E  K  L  C  N  S  Y  I  *  I  V  A  E  G  A  S  S  W  L  C  *  K  *  L  E  D  F  C  P  *  Y  I  D  V  N  D  H  I  M  R  F  D  F  C  H  T  K  N  S  C  E  T  F  H  L  V  W  Q  N  E  Y  N  *  L  T  V  L  F  Y  V  L  Q  H  E  Q  R  N  L  R  V  Y  F  C  Y  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82064" stop="81912"/>
                    <exon start="81510" stop="81457"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WGPGRVECMQTLPLPHGGREEVSGRPSDQDLLCGSKCILYYRCETIRWAKTTLMRLRYGLLLEQKFAY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80842" stop="80742"/>
                    <exon start="79825" stop="79732"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDSITPGKPKALRKSSGLDPLQSHSVAACWRPFRMIVRMSHSKAIFISKWKGLLVLIIEKFIRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="86186" PGL_stop="88543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86186" e_stop="86255"/>
            <exon e_start="86352" e_stop="86459"/>
            <exon e_start="86553" e_stop="86595"/>
            <exon e_start="87474" e_stop="87669"/>
            <exon e_start="88020" e_stop="88543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86186" e_stop="86255" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.913">
            <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86352" e_stop="86459" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86553" e_stop="86595" e_length="43"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.883">
            <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87474" e_stop="87669" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="88020" e_stop="88543" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86186" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86202" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86203" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86207" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86207" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86207" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86208" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86210" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86211" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86212" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86212" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86212" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86213" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86213" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86213" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86213" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86213" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86225" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86225" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86234" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86235" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86236" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86238" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86238" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86251" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86254" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86254" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86353" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86366" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86371" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86372" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86383" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86563" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87512" stop="87669"/>
              <exon start="88020" stop="88043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87542" stop="87669"/>
              <exon start="88020" stop="88450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481257" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87615" stop="87669"/>
              <exon start="88020" stop="88425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87650" stop="87669"/>
              <exon start="88020" stop="88516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87650" stop="87669"/>
              <exon start="88020" stop="88511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87650" stop="87669"/>
              <exon start="88020" stop="88509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88118" stop="88397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88121" stop="88543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283271" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCTTCTTCATTAGGCTCAGTATTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATG : GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG : GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG : CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA : GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTAATTGGTTTCAATTGTGGTGATGAATGGTGTTGTTTTCAACATTTTTTTTCAAATTGTATTTGGGTGTTGGATGTTCCATCTTTGGCATGAAGTGCAATTATGCAACCCA</gDNA_template>
            <first_frame> S  S  S  S  L  G  S  V  F  F  N  S  L  A  A  A  A  A  I  S  S  S  N   : G  F  R  E  E  I  E  Q  P  H  E  G  H  Q  G  S  E  A  C  P  Q  Y  L  R  R  *  E  W  R  S  A  Y  K  S  S  K   : G  L  G  A  T  *  R  P  I  T  C  F  L  Q  S :   K  V  Y  C  A  V  L  W  Y  Q  A  *  *  K  N  S  L  L  R  D  C  Q  R  *  E  S  Y  A  A  A  *  E  W  T  E  S  *  G  I  *  V  V  E  K  E  L  Q  *  N  R  L  L  W  V  W  Y  S  G  A  H  *  S  W  N  *  :  V  *  P  F  N  W  Y  L  W  Y  G  F  L  C  C  L  G  A  S  W  I  P  C  C  S  S  P  Q  V  Q  V  S  C  R  D  P  A  Q  G  H  K  G  G  F  N  E  V  V  P  G  Q  I  *  R  C  Y  P  *  Q  V  L  K  H  S  V  I  S  *  E  P  A  *  Q  V  Y  A  F  C  R  L  M  S  I  S  L  L  E  G  S  F  G  E  F  L  L  V  G  V  *  G  R  M  C  *  F  P  F  C  L  S  D  E  L  K  S  F  F  F  L  C  C  N  H  S  R  T  I  N  L  A  S  Q  E  M  L  R  I  P  N  W  F  Q  L  W  *  *  M  V  L  F  S  T  F  F  F  K  L  Y  L  G  V  G  C  S  I  F  G  M  K  C  N  Y  A  T   </first_frame>
            <second_frame>  H  L  L  H  *  A  Q  Y  S  S  T  H  L  L  L  L  L  Q  F  R  P  A  M  :  A  S  E  K  K  L  S  N  P  M  R  D  I  K  V  Q  K  L  V  L  N  I  S  V  G  E  S  G  D  R  L  T  R  A  A  K  :  V  L  E  Q  L  S  G  Q  S  P  V  F  S  K   : A  R  Y  T  V  R  S  F  G  I  R  R  N  E  K  I  A  C  Y  V  T  V  R  G  E  K  A  M  Q  L  L  E  S  G  L  K  V  K  E  Y  E  L  L  R  R  N  F  S  E  T  G  C  F  G  F  G  I  Q  E  H  I  D  L  G  I  K :   Y  D  P  S  T  G  I  Y  G  M  D  F  Y  V  V  L  E  R  P  G  Y  R  V  A  R  R  R  R  C  K  S  R  V  G  I  Q  H  R  V  T  K  E  D  S  M  K  W  F  Q  V  K  Y  E  G  V  I  L  N  K  S  S  N  I  Q  *  *  V  E  N  Q  L  S  K  F  M  H  F  V  D  *  C  L  Y  H  S  *  R  E  V  L  G  N  F  Y  *  L  V  Y  E  G  G  C  V  S  S  H  F  V  Y  Q  M  N  S  N  L  F  F  F  C  V  A  I  I  V  E  P  L  I  *  H  H  K  R  C  Y  E  Y  L  I  G  F  N  C  G  D  E  W  C  C  F  Q  H  F  F  S  N  C  I  W  V  L  D  V  P  S  L  A  *  S  A  I  M  Q  P  </second_frame>
            <third_frame>   I  F  F  I  R  L  S  I  L  Q  L  T  C  C  C  C  C  N  F  V  Q  Q  W :   L  Q  R  R  N  *  A  T  P  *  G  T  S  R  F  R  S  L  S  S  I  S  P  S  V  R  V  E  I  G  L  Q  E  Q  Q  R :   S  W  S  N  L  A  A  N  H  L  F  S  P  K  :  Q  G  I  L  C  G  P  L  V  S  G  V  M  K  K  *  L  A  T  *  L  S  E  V  R  K  L  C  S  C  L  R  V  D  *  K  L  R  N  M  S  C  *  E  G  T  S  V  K  P  A  A  L  G  L  V  F  R  S  T  L  I  L  E  L   : S  M  T  L  Q  L  V  F  M  V  W  I  S  M  L  S  W  S  V  L  D  T  V  L  L  V  A  A  G  A  S  L  V  S  G  S  S  T  G  S  Q  R  R  I  Q  *  S  G  S  R  S  N  M  K  V  L  S  L  T  S  P  Q  T  F  S  D  K  L  R  T  S  L  A  S  L  C  I  L  *  T  D  V  Y  I  T  P  R  G  K  F  W  G  I  S  I  S  W  C  M  R  E  D  V  L  V  P  I  L  S  I  R  *  T  Q  I  F  F  F  F  V  L  Q  S  *  *  N  H  *  S  S  I  T  R  D  V  T  N  T  *  L  V  S  I  V  V  M  N  G  V  V  F  N  I  F  F  Q  I  V  F  G  C  W  M  F  H  L  W  H  E  V  Q  L  C  N  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86202" stop="86255"/>
                    <exon start="86352" stop="86459"/>
                    <exon start="86553" stop="86595"/>
                    <exon start="87474" stop="87669"/>
                    <exon start="88020" stop="88215"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQYSSTHLLLLLQFRPAMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSSNIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86204" e_stop="86255"/>
            <exon e_start="86352" e_stop="86453"/>
            <exon e_start="87474" e_stop="87669"/>
            <exon e_start="88020" e_stop="88543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.913" e_score="0.865"/>
          <exon-intron don_prob="0.538" acc_prob="0.883" e_score="0.922"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.964"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.865">
            <gDNA_exon_boundary e_start="86204" e_stop="86255" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.913">
            <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="86352" e_stop="86453" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.538" acc_prob="0.883">
            <gDNA_intron_boundary i_start="86454" i_stop="87473" i_length="1020"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="87474" e_stop="87669" e_length="196"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="88020" e_stop="88543" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86204" stop="86255"/>
              <exon start="86352" stop="86453"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87512" stop="87669"/>
              <exon start="88020" stop="88043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87542" stop="87669"/>
              <exon start="88020" stop="88450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481257" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87615" stop="87669"/>
              <exon start="88020" stop="88425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87650" stop="87669"/>
              <exon start="88020" stop="88516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87650" stop="87669"/>
              <exon start="88020" stop="88511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87650" stop="87669"/>
              <exon start="88020" stop="88509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88118" stop="88397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88121" stop="88543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283271" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGTATTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATG : GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCA : CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA : GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTAATTGGTTTCAATTGTGGTGATGAATGGTGTTGTTTTCAACATTTTTTTTCAAATTGTATTTGGGTGTTGGATGTTCCATCTTTGGCATGAAGTGCAATTATGCAACCCA</gDNA_template>
            <first_frame> S  V  F  F  N  S  L  A  A  A  A  A  I  S  S  S  N   : G  F  R  E  E  I  E  Q  P  H  E  G  H  Q  G  S  E  A  C  P  Q  Y  L  R  R  *  E  W  R  S  A  Y  K  S   : T  R  Y  T  V  R  S  F  G  I  R  R  N  E  K  I  A  C  Y  V  T  V  R  G  E  K  A  M  Q  L  L  E  S  G  L  K  V  K  E  Y  E  L  L  R  R  N  F  S  E  T  G  C  F  G  F  G  I  Q  E  H  I  D  L  G  I  K :   Y  D  P  S  T  G  I  Y  G  M  D  F  Y  V  V  L  E  R  P  G  Y  R  V  A  R  R  R  R  C  K  S  R  V  G  I  Q  H  R  V  T  K  E  D  S  M  K  W  F  Q  V  K  Y  E  G  V  I  L  N  K  S  S  N  I  Q  *  *  V  E  N  Q  L  S  K  F  M  H  F  V  D  *  C  L  Y  H  S  *  R  E  V  L  G  N  F  Y  *  L  V  Y  E  G  G  C  V  S  S  H  F  V  Y  Q  M  N  S  N  L  F  F  F  C  V  A  I  I  V  E  P  L  I  *  H  H  K  R  C  Y  E  Y  L  I  G  F  N  C  G  D  E  W  C  C  F  Q  H  F  F  S  N  C  I  W  V  L  D  V  P  S  L  A  *  S  A  I  M  Q  P  </first_frame>
            <second_frame>  Q  Y  S  S  T  H  L  L  L  L  L  Q  F  R  P  A  M  :  A  S  E  K  K  L  S  N  P  M  R  D  I  K  V  Q  K  L  V  L  N  I  S  V  G  E  S  G  D  R  L  T  R  A  :  Q  G  I  L  C  G  P  L  V  S  G  V  M  K  K  *  L  A  T  *  L  S  E  V  R  K  L  C  S  C  L  R  V  D  *  K  L  R  N  M  S  C  *  E  G  T  S  V  K  P  A  A  L  G  L  V  F  R  S  T  L  I  L  E  L   : S  M  T  L  Q  L  V  F  M  V  W  I  S  M  L  S  W  S  V  L  D  T  V  L  L  V  A  A  G  A  S  L  V  S  G  S  S  T  G  S  Q  R  R  I  Q  *  S  G  S  R  S  N  M  K  V  L  S  L  T  S  P  Q  T  F  S  D  K  L  R  T  S  L  A  S  L  C  I  L  *  T  D  V  Y  I  T  P  R  G  K  F  W  G  I  S  I  S  W  C  M  R  E  D  V  L  V  P  I  L  S  I  R  *  T  Q  I  F  F  F  F  V  L  Q  S  *  *  N  H  *  S  S  I  T  R  D  V  T  N  T  *  L  V  S  I  V  V  M  N  G  V  V  F  N  I  F  F  Q  I  V  F  G  C  W  M  F  H  L  W  H  E  V  Q  L  C  N  P </second_frame>
            <third_frame>   S  I  L  Q  L  T  C  C  C  C  C  N  F  V  Q  Q  W :   L  Q  R  R  N  *  A  T  P  *  G  T  S  R  F  R  S  L  S  S  I  S  P  S  V  R  V  E  I  G  L  Q  E  H :   K  V  Y  C  A  V  L  W  Y  Q  A  *  *  K  N  S  L  L  R  D  C  Q  R  *  E  S  Y  A  A  A  *  E  W  T  E  S  *  G  I  *  V  V  E  K  E  L  Q  *  N  R  L  L  W  V  W  Y  S  G  A  H  *  S  W  N  *  :  V  *  P  F  N  W  Y  L  W  Y  G  F  L  C  C  L  G  A  S  W  I  P  C  C  S  S  P  Q  V  Q  V  S  C  R  D  P  A  Q  G  H  K  G  G  F  N  E  V  V  P  G  Q  I  *  R  C  Y  P  *  Q  V  L  K  H  S  V  I  S  *  E  P  A  *  Q  V  Y  A  F  C  R  L  M  S  I  S  L  L  E  G  S  F  G  E  F  L  L  V  G  V  *  G  R  M  C  *  F  P  F  C  L  S  D  E  L  K  S  F  F  F  L  C  C  N  H  S  R  T  I  N  L  A  S  Q  E  M  L  R  I  P  N  W  F  Q  L  W  *  *  M  V  L  F  S  T  F  F  F  K  L  Y  L  G  V  G  C  S  I  F  G  M  K  C  N  Y  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86429" stop="86453"/>
                    <exon start="87474" stop="87669"/>
                    <exon start="88020" stop="88215"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EWRSAYKSTRYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSSNIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="94315" PGL_stop="92859"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94315" e_stop="93971"/>
            <exon e_start="93865" e_stop="93761"/>
            <exon e_start="93346" e_stop="92997"/>
            <exon e_start="92886" e_stop="92859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.992" e_score="0.969"/>
          <exon-intron don_prob="0.952" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.941" e_score="0.991"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="94315" e_stop="93971" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.992">
            <gDNA_intron_boundary i_start="93970" i_stop="93866" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93865" e_stop="93761" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93760" i_stop="93347" i_length="414"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="93346" e_stop="92997" e_length="350"/>
          </exon>
          <intron i_serial="3" don_prob="0.864" acc_prob="0.941">
            <gDNA_intron_boundary i_start="92996" i_stop="92887" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="0.500">
            <gDNA_exon_boundary e_start="92886" e_stop="92859" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94315" stop="93977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94294" stop="93971"/>
              <exon start="93865" stop="93761"/>
              <exon start="93346" stop="93035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94240" stop="93971"/>
              <exon start="93865" stop="93761"/>
              <exon start="93346" stop="93223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93816" stop="93761"/>
              <exon start="93346" stop="92997"/>
              <exon start="92886" stop="92859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277575" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAAACCTCAGTCTGAAATCCCTAAAACCCCTTTCCACTTTTCTTCTTCCAAAAAATCGAACCAGATCGATCGAGCGATGTGGAATAATCGACGTCCGCCGGAAAATGGCTCCGGTAATGAGGAAGACAACTCCGATCAGGAGAAAACTATAGCAAAGGCAGCTGGTTTCGTGGTCGTTTCGGGAATCGCGATGAGCATTCTCAAAGCACTCAATCCATTCAACCATCAAAACATCAACAGTAAAACCAGTGAAGTAAAGGCAATAGTTTTCGAGTCAGCTCCATCTCAAACTCAGCCTCAAGTGCTTCAACAATGCCAACCAGAGCCTGAGCTCATAGTCAAG : AAACCAAATTGTTGCGTGGAGAAAAGAGAGAAGAAGGAAGTTTCACCAAATGTGATAGAGATTGAGCGGGGAGACACTCTTTGGGGACTCTCTAGAAAATATGGG : GTGTCAATCGAGGAAATTAAGGACGCTAACGGGCTTGAAGGGGACACCATCTATGCTGGGAAGAAACTTGTAATACCCTAACGTGCTCAATCTTGTTGATTCTTGTTGTTGTATTGTTGGTTATCCTGTGAGGTTTGTATTGTTTTTTTCGTTGAACTATTGGGTATGTTGTATTAGGGGAGAGATTTTGTAGTTTGAAACGAACGGTATGGCTGGTACGAGAGATAGGGATGTGAGATTGGTTTGAGCTAATGTAAAATGGAAAATTTTAGCTGCTATGATGAACTTGTATCTCGTCTCGCAATATTCTATCATGTAGAAGAAATGATGATTCTCCAAATTCTCTATCG : AAGTAAGGGAAATGTTGAAAGCAACAAG</gDNA_template>
            <first_frame> F  K  P  Q  S  E  I  P  K  T  P  F  H  F  S  S  S  K  K  S  N  Q  I  D  R  A  M  W  N  N  R  R  P  P  E  N  G  S  G  N  E  E  D  N  S  D  Q  E  K  T  I  A  K  A  A  G  F  V  V  V  S  G  I  A  M  S  I  L  K  A  L  N  P  F  N  H  Q  N  I  N  S  K  T  S  E  V  K  A  I  V  F  E  S  A  P  S  Q  T  Q  P  Q  V  L  Q  Q  C  Q  P  E  P  E  L  I  V  K  :  K  P  N  C  C  V  E  K  R  E  K  K  E  V  S  P  N  V  I  E  I  E  R  G  D  T  L  W  G  L  S  R  K  Y  G  :  V  S  I  E  E  I  K  D  A  N  G  L  E  G  D  T  I  Y  A  G  K  K  L  V  I  P  *  R  A  Q  S  C  *  F  L  L  L  Y  C  W  L  S  C  E  V  C  I  V  F  F  V  E  L  L  G  M  L  Y  *  G  R  D  F  V  V  *  N  E  R  Y  G  W  Y  E  R  *  G  C  E  I  G  L  S  *  C  K  M  E  N  F  S  C  Y  D  E  L  V  S  R  L  A  I  F  Y  H  V  E  E  M  M  I  L  Q  I  L  Y  R :   S  K  G  N  V  E  S  N  K </first_frame>
            <second_frame>  S  N  L  S  L  K  S  L  K  P  L  S  T  F  L  L  P  K  N  R  T  R  S  I  E  R  C  G  I  I  D  V  R  R  K  M  A  P  V  M  R  K  T  T  P  I  R  R  K  L  *  Q  R  Q  L  V  S  W  S  F  R  E  S  R  *  A  F  S  K  H  S  I  H  S  T  I  K  T  S  T  V  K  P  V  K  *  R  Q  *  F  S  S  Q  L  H  L  K  L  S  L  K  C  F  N  N  A  N  Q  S  L  S  S  *  S  R :   N  Q  I  V  A  W  R  K  E  R  R  R  K  F  H  Q  M  *  *  R  L  S  G  E  T  L  F  G  D  S  L  E  N  M  G :   C  Q  S  R  K  L  R  T  L  T  G  L  K  G  T  P  S  M  L  G  R  N  L  *  Y  P  N  V  L  N  L  V  D  S  C  C  C  I  V  G  Y  P  V  R  F  V  L  F  F  S  L  N  Y  W  V  C  C  I  R  G  E  I  L  *  F  E  T  N  G  M  A  G  T  R  D  R  D  V  R  L  V  *  A  N  V  K  W  K  I  L  A  A  M  M  N  L  Y  L  V  S  Q  Y  S  I  M  *  K  K  *  *  F  S  K  F  S  I   : E  V  R  E  M  L  K  A  T   </second_frame>
            <third_frame>   Q  T  S  V  *  N  P  *  N  P  F  P  L  F  F  F  Q  K  I  E  P  D  R  S  S  D  V  E  *  S  T  S  A  G  K  W  L  R  *  *  G  R  Q  L  R  S  G  E  N  Y  S  K  G  S  W  F  R  G  R  F  G  N  R  D  E  H  S  Q  S  T  Q  S  I  Q  P  S  K  H  Q  Q  *  N  Q  *  S  K  G  N  S  F  R  V  S  S  I  S  N  S  A  S  S  A  S  T  M  P  T  R  A  *  A  H  S  Q   : E  T  K  L  L  R  G  E  K  R  E  E  G  S  F  T  K  C  D  R  D  *  A  G  R  H  S  L  G  T  L  *  K  I  W   : G  V  N  R  G  N  *  G  R  *  R  A  *  R  G  H  H  L  C  W  E  E  T  C  N  T  L  T  C  S  I  L  L  I  L  V  V  V  L  L  V  I  L  *  G  L  Y  C  F  F  R  *  T  I  G  Y  V  V  L  G  E  R  F  C  S  L  K  R  T  V  W  L  V  R  E  I  G  M  *  D  W  F  E  L  M  *  N  G  K  F  *  L  L  *  *  T  C  I  S  S  R  N  I  L  S  C  R  R  N  D  D  S  P  N  S  L  S  :  K  *  G  K  C  *  K  Q  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94315" stop="93971"/>
                    <exon start="93865" stop="93761"/>
                    <exon start="93346" stop="93266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKPQSEIPKTPFHFSSSKKSNQIDRAMWNNRRPPENGSGNEEDNSDQEKTIAKAAGFVVVSGIAMSILKALNPFNHQNINSKTSEVKAIVFESAPSQTQPQVLQQCQPEPELIVKKPNCCVEKREKKEVSPNVIEIERGDTLWGLSRKYGVSIEEIKDANGLEGDTIYAGKKLVIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="94874" PGL_stop="95926"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94874" e_stop="95007"/>
            <exon e_start="95401" e_stop="95926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94874" e_stop="95007" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="95008" i_stop="95400" i_length="393"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="95401" e_stop="95926" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94874" stop="95007"/>
              <exon start="95401" stop="95926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421676" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95401" stop="95922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95401" stop="95922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95401" stop="95922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95401" stop="95912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95443" stop="95907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95448" stop="95896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95459" stop="95848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95493" stop="95897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95498" stop="95895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95515" stop="95921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95524" stop="95912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218307" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95546" stop="95912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95580" stop="95891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95638" stop="95916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95643" stop="95909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGTGAACCTGAAGTGACCACTGGTGCTGCTGGTGATTTGCAGCAGATCACTGGTTTGGCAAAACAG : ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAGTTGT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  V  N  L  K  *  P  L  V  L  L  V  I  C  S  R  S  L  V  W  Q  N  R :   W  L  S  L  L  V  C  L  N  L  A  R  G  P  S  W  I  L  Q  P  K  V  V  M  *  S  *  E  *  W  P  G  T  R  C  Q  K  S  *  L  K  T  L  M  L  L  *  R  S  F  Q  T  V  H  M  R  L  H  *  A  K  S  A  A  T  V  K  Q  L  I  R  L  W  K  S  S  L  K  R  R  R  *  L  E  M  N  S  V  L  F  S  Q  N  L  L  K  F  L  L  K  T  A  S  L  L  L  F  L  P  Q  Q  L  Y  N  S  L  N  I  Y  C  N  L  Y  N  S  H  T  L  I  P  L  I  *  S  R  V  *  T  I  Y  R  L  *  E  S  *  K  T  L  L  C  I  C  V  *  S  K  F  S  H  L  I  *  N  *  S  F  L  H  C  N  A  T  S  C </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  W  *  T  *  S  D  H  W  C  C  W  *  F  A  A  D  H  W  F  G  K  T   : D  G  C  H  F  W  Y  V  *  T  W  P  V  V  P  H  G  F  F  S  P  K  W  *  C  N  H  E  N  D  G  Q  E  L  D  V  R  K  A  S  *  R  H  *  C  C  C  E  E  A  F  R  Q  C  I  *  D  C  I  E  P  N  P  Q  Q  P  *  S  N  *  *  D  C  G  S  P  P  *  K  G  D  D  D  W  R  *  I  P  C  Y  S  L  R  I  C  *  N  S  C  *  K  P  R  P  C  C  C  S  Y  P  S  S  C  I  I  A  *  T  Y  T  A  T  C  T  I  H  I  H  L  S  P  *  F  D  L  E  Y  K  Q  Y  I  D  Y  K  K  V  K  K  H  F  C  A  F  V  Y  E  A  N  F  H  I  *  Y  R  T  S  L  F  F  T  V  M  L  R  V   </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  G  E  P  E  V  T  T  G  A  A  G  D  L  Q  Q  I  T  G  L  A  K  Q  :  M  V  V  T  F  G  M  S  E  L  G  P  W  S  L  M  D  S  S  A  Q  S  G  D  V  I  M  R  M  M  A  R  N  S  M  S  E  K  L  A  E  D  I  D  V  A  V  K  K  L  S  D  S  A  Y  E  I  A  L  S  Q  I  R  S  N  R  E  A  I  D  K  I  V  E  V  L  L  E  K  E  T  M  T  G  D  E  F  R  A  I  L  S  E  F  V  E  I  P  A  E  N  R  V  P  A  A  V  P  T  P  A  A  V  *  *  L  E  H  I  L  Q  L  V  Q  F  T  Y  T  Y  P  P  N  L  I  *  S  I  N  N  I  *  T  I  R  K  L  K  N  T  F  V  H  L  C  M  K  Q  I  F  T  F  D  I  E  L  V  F  S  S  L  *  C  Y  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94876" stop="95007"/>
                    <exon start="95401" stop="95742"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSELGPWSLMDSSAQSGDVIMRMMARNSMSEKLAEDIDVAVKKLSDSAYEIALSQIRSNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVPAAVPTPAAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="95922" PGL_stop="95392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95922" e_stop="95392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="95922" e_stop="95392" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95922" stop="95392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95922" stop="95392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95921" stop="95392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGTAGCATTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGCATGAA</gDNA_template>
            <first_frame> L  V  A  L  Q  *  R  K  D  *  F  Y  I  K  C  E  N  L  L  H  T  Q  M  H  K  S  V  F  *  L  S  Y  S  L  Y  I  V  Y  T  L  D  Q  I  R  G  I  S  V  C  E  L  Y  K  L  Q  Y  M  F  K  L  L  Y  S  C  W  G  R  N  S  S  R  D  A  V  F  S  R  N  F  N  K  F  *  E  N  S  T  E  F  I  S  S  H  R  L  L  F  K  E  D  F  H  N  L  I  N  C  F  T  V  A  A  D  L  A  Q  C  N  L  I  C  T  V  *  K  L  L  H  S  N  I  N  V  F  S  *  L  F  *  H  R  V  P  G  H  H  S  H  D  Y  I  T  T  L  G  *  R  I  H  E  G  P  R  A  K  F  R  H  T  K  S  D  N  H  L  H  E </first_frame>
            <second_frame>  S  *  H  Y  S  E  E  K  T  S  S  I  S  N  V  K  I  C  F  I  H  K  C  T  K  V  F  F  N  F  L  I  V  Y  I  L  F  I  L  *  I  K  L  G  G  *  V  Y  V  N  C  T  S  C  S  I  C  S  S  Y  Y  T  A  A  G  V  G  T  A  A  G  T  R  F  S  A  G  I  S  T  N  S  E  R  I  A  R  N  S  S  P  V  I  V  S  F  S  R  R  T  S  T  I  L  S  I  A  S  R  L  L  R  I  W  L  N  A  I  S  Y  A  L  S  E  S  F  F  T  A  T  S  M  S  S  A  S  F  S  D  I  E  F  L  A  I  I  L  M  I  T  S  P  L  W  A  E  E  S  M  R  D  H  G  P  S  S  D  I  P  K  V  T  T  I  C  M   </second_frame>
            <third_frame>   R  S  I  T  V  K  K  R  L  V  L  Y  Q  M  *  K  F  A  S  Y  T  N  A  Q  K  C  F  L  T  F  L  *  S  I  Y  C  L  Y  S  R  S  N  *  G  D  K  C  M  *  I  V  Q  V  A  V  Y  V  Q  A  I  I  Q  L  L  G  *  E  Q  Q  Q  G  R  G  F  Q  Q  E  F  Q  Q  I  L  R  E  *  H  G  I  H  L  Q  S  S  S  P  F  Q  G  G  L  P  Q  S  Y  Q  L  L  H  G  C  C  G  F  G  S  M  Q  S  H  M  H  C  L  K  A  S  S  Q  Q  H  Q  C  L  Q  L  A  F  L  T  S  S  S  W  P  S  F  S  *  L  H  H  H  F  G  L  K  N  P  *  G  T  T  G  Q  V  Q  T  Y  Q  K  *  Q  P  S  A  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95783" stop="95394"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYVNCTSCSICSSYYTAAGVGTAAGTRFSAGISTNSERIARNSSPVIVSFSRRTSTILSIASRLLRIWLNAISYALSESFFTATSMSSASFSDIEFLAIILMITSPLWAEESMRDHGPSSDIPKVTTICM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="98649" PGL_stop="99346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98649" e_stop="99346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="98649" e_stop="99346" e_length="698"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98649" stop="99346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574054" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATTTTTGCATCAACTTATATCCACACAATGCATTTGATAGGACCATAAAAGAGCAGAAAAATCTTCTCAATTCACATCATTAACCATATACTGTACAGCAAGAAGACTACCAAAACCATGAACTCAATCCAACATAGTAGATGCTTATTGCTAGTCACAGCCATGCCCACTGACACCATGCTAATCTAAACTAGGTCCACATGCGACCAACTTTAAAACAAAGAACTTCAATATACTACCAATTCAAGTACCAAGCAGCCACAAAGCAGTCTTCAGTTAAAGCTTTGCCACCACAATTGGTGTAAACAAACCGAACAACGAGAACTTCATTTAGTTCCAGCATAATTCAGGTATGATCAAATCTTCCATCTGTACTGATCTCTGCCTCATTTGGTTTTACAGAAACCATGTCTAACATCTTTGGCTCGTCCCTTCCCTCTTGTTGTAGTTCTCTGATTCGGCACAAATGATAGTCGCCCTCCAGCACTTGATGATTTCTTTTCAAGAAGTCTTAAGAATGTGCATTCAATTCTATGTTTCTCCCCTTCTCAGAGATATATTACATACAGGCTAATGATAAAAGAATAGAACAATCAGAAAGGAAAGAATGATTGAACAGAATTTGAGATTCCACCGTCTTAAACCTCGAAACCGAACTCAAATGGACAATGTGCCATCTTCAGACCTGGAATATA</gDNA_template>
            <first_frame> N  I  F  A  S  T  Y  I  H  T  M  H  L  I  G  P  *  K  S  R  K  I  F  S  I  H  I  I  N  H  I  L  Y  S  K  K  T  T  K  T  M  N  S  I  Q  H  S  R  C  L  L  L  V  T  A  M  P  T  D  T  M  L  I  *  T  R  S  T  C  D  Q  L  *  N  K  E  L  Q  Y  T  T  N  S  S  T  K  Q  P  Q  S  S  L  Q  L  K  L  C  H  H  N  W  C  K  Q  T  E  Q  R  E  L  H  L  V  P  A  *  F  R  Y  D  Q  I  F  H  L  Y  *  S  L  P  H  L  V  L  Q  K  P  C  L  T  S  L  A  R  P  F  P  L  V  V  V  L  *  F  G  T  N  D  S  R  P  P  A  L  D  D  F  F  S  R  S  L  K  N  V  H  S  I  L  C  F  S  P  S  Q  R  Y  I  T  Y  R  L  M  I  K  E  *  N  N  Q  K  G  K  N  D  *  T  E  F  E  I  P  P  S  *  T  S  K  P  N  S  N  G  Q  C  A  I  F  R  P  G  I   </first_frame>
            <second_frame>  I  F  L  H  Q  L  I  S  T  Q  C  I  *  *  D  H  K  R  A  E  K  S  S  Q  F  T  S  L  T  I  Y  C  T  A  R  R  L  P  K  P  *  T  Q  S  N  I  V  D  A  Y  C  *  S  Q  P  C  P  L  T  P  C  *  S  K  L  G  P  H  A  T  N  F  K  T  K  N  F  N  I  L  P  I  Q  V  P  S  S  H  K  A  V  F  S  *  S  F  A  T  T  I  G  V  N  K  P  N  N  E  N  F  I  *  F  Q  H  N  S  G  M  I  K  S  S  I  C  T  D  L  C  L  I  W  F  Y  R  N  H  V  *  H  L  W  L  V  P  S  L  L  L  *  F  S  D  S  A  Q  M  I  V  A  L  Q  H  L  M  I  S  F  Q  E  V  L  R  M  C  I  Q  F  Y  V  S  P  L  L  R  D  I  L  H  T  G  *  *  *  K  N  R  T  I  R  K  E  R  M  I  E  Q  N  L  R  F  H  R  L  K  P  R  N  R  T  Q  M  D  N  V  P  S  S  D  L  E  Y  </second_frame>
            <third_frame>   Y  F  C  I  N  L  Y  P  H  N  A  F  D  R  T  I  K  E  Q  K  N  L  L  N  S  H  H  *  P  Y  T  V  Q  Q  E  D  Y  Q  N  H  E  L  N  P  T  *  *  M  L  I  A  S  H  S  H  A  H  *  H  H  A  N  L  N  *  V  H  M  R  P  T  L  K  Q  R  T  S  I  Y  Y  Q  F  K  Y  Q  A  A  T  K  Q  S  S  V  K  A  L  P  P  Q  L  V  *  T  N  R  T  T  R  T  S  F  S  S  S  I  I  Q  V  *  S  N  L  P  S  V  L  I  S  A  S  F  G  F  T  E  T  M  S  N  I  F  G  S  S  L  P  S  C  C  S  S  L  I  R  H  K  *  *  S  P  S  S  T  *  *  F  L  F  K  K  S  *  E  C  A  F  N  S  M  F  L  P  F  S  E  I  Y  Y  I  Q  A  N  D  K  R  I  E  Q  S  E  R  K  E  *  L  N  R  I  *  D  S  T  V  L  N  L  E  T  E  L  K  W  T  M  C  H  L  Q  T  W  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0075L20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="99711" PGL_stop="99200"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99711" e_stop="99200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99711" e_stop="99200" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99711" stop="99201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99687" stop="99200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGTCACCAAAGGTTTAGTTGCAGAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTGA</gDNA_template>
            <first_frame> G  V  T  K  G  L  V  A  E  K  V  F  T  S  L  A  E  K  G  K  L  A  D  F  V  L  C  I  G  D  D  R  S  D  E  D  M  F  E  I  I  G  D  A  L  S  R  N  I  I  S  Y  D  A  K  V  F  A  C  T  V  G  Q  K  P  S  K  A  K  Y  Y  L  D  D  T  S  E  V  V  L  M  L  D  S  L  A  D  A  T  D  T  P  V  T  S  D  D  D  E  P  A  D  S  D  *  M  *  L  P  D  V  L  F  A  S  V  T  F  S  I  E  C  I  F  Q  V  *  R  W  H  I  V  H  L  S  S  V  S  R  F  K  T  V  E  S  Q  I  L  F  N  H  S  F  L  S  D  C  S  I  L  L  S  L  A  C  M  *  Y  I  S   </first_frame>
            <second_frame>  G  S  P  K  V  *  L  Q  K  K  S  L  H  L  *  R  R  K  E  N  W  R  I  L  C  F  A  L  V  M  I  D  Q  M  K  I  C  L  K  S  L  A  M  L  C  P  E  I  L  F  H  M  M  P  R  Y  L  L  A  Q  L  D  K  N  L  A  K  Q  S  I  T  W  M  T  H  L  R  W  C  L  C  *  T  P  L  L  M  P  L  I  L  Q  *  L  L  M  T  M  N  L  R  T  P  T  E  C  S  Y  Q  M  F  C  L  L  R  L  P  S  L  L  N  V  Y  S  R  S  E  D  G  T  L  S  I  *  V  R  F  R  G  L  R  R  W  N  L  K  F  C  S  I  I  L  S  F  L  I  V  L  F  F  Y  H  *  P  V  C  N  I  S  L  </second_frame>
            <third_frame>   G  H  Q  R  F  S  C  R  K  S  L  Y  I  F  S  G  E  R  K  T  G  G  F  C  A  L  H  W  *  *  *  I  R  *  R  Y  V  *  N  H  W  R  C  F  V  Q  K  Y  Y  F  I  *  C  Q  G  I  C  L  H  S  W  T  K  T  *  Q  S  K  V  L  L  G  *  H  I  *  G  G  A  Y  A  R  L  P  C  *  C  H  *  Y  S  S  D  F  *  *  R  *  T  C  G  L  R  L  N  V  A  T  R  C  F  V  C  F  G  Y  L  L  Y  *  M  Y  I  P  G  L  K  M  A  H  C  P  F  E  F  G  F  E  V  *  D  G  G  I  S  N  S  V  Q  S  F  F  P  F  *  L  F  Y  S  F  I  I  S  L  Y  V  I  Y  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99711" stop="99397"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVTKGLVAEKVFTSLAEKGKLADFVLCIGDDRSDEDMFEIIGDALSRNIISYDAKVFACTVGQKPSKAKYYLDDTSEVVLMLDSLADATDTPVTSDDDEPADSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="104071" PGL_stop="103308"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104071" e_stop="103549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="104071" e_stop="103549" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104071" stop="103549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104071" stop="103550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104071" stop="103550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104071" stop="103550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104024" stop="103576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104013" stop="103624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103979" stop="103575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103974" stop="103577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103957" stop="103551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103938" stop="103555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103892" stop="103581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103834" stop="103556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103829" stop="103563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAATGCTACGAGT</gDNA_template>
            <first_frame> M  V  V  T  F  G  M  S  E  L  G  P  W  S  L  M  D  S  S  A  Q  S  G  D  V  I  M  R  M  M  A  R  N  S  M  S  E  K  L  A  E  D  I  D  V  A  V  K  K  L  S  D  S  A  Y  E  I  A  L  S  Q  I  R  S  N  R  E  A  I  D  K  I  V  E  V  L  L  E  K  E  T  M  T  G  D  E  F  R  A  I  L  S  E  F  V  E  I  P  A  E  N  R  V  P  A  A  V  P  T  P  A  A  V  *  *  L  E  H  I  L  Q  L  V  Q  F  T  Y  T  Y  P  P  N  L  I  *  S  I  N  N  I  *  T  I  R  K  L  K  N  T  F  V  H  L  C  M  K  Q  I  F  T  F  D  I  E  L  V  F  S  S  L  *  C  Y  E  </first_frame>
            <second_frame>  W  L  S  L  L  V  C  L  N  L  A  R  G  P  S  W  I  L  Q  P  K  V  V  M  *  S  *  E  *  W  P  G  T  R  C  Q  K  S  *  L  K  T  L  M  L  L  *  R  S  F  Q  T  V  H  M  R  L  H  *  A  K  S  A  A  T  V  K  Q  L  I  R  L  W  K  S  S  L  K  R  R  R  *  L  E  M  N  S  V  L  F  S  Q  N  L  L  K  F  L  L  K  T  A  S  L  L  L  F  L  P  Q  Q  L  Y  N  S  L  N  I  Y  C  N  L  Y  N  S  H  T  L  I  P  L  I  *  S  R  V  *  T  I  Y  R  L  *  E  S  *  K  T  L  L  C  I  C  V  *  S  K  F  S  H  L  I  *  N  *  S  F  L  H  C  N  A  T  S </second_frame>
            <third_frame>   G  C  H  F  W  Y  V  *  T  W  P  V  V  P  H  G  F  F  S  P  K  W  *  C  N  H  E  N  D  G  Q  E  L  D  V  R  K  A  S  *  R  H  *  C  C  C  E  E  A  F  R  Q  C  I  *  D  C  I  E  P  N  P  Q  Q  P  *  S  N  *  *  D  C  G  S  P  P  *  K  G  D  D  D  W  R  *  I  P  C  Y  S  L  R  I  C  *  N  S  C  *  K  P  R  P  C  C  C  S  Y  P  S  S  C  I  I  A  *  T  Y  T  A  T  C  T  I  H  I  H  L  S  P  *  F  D  L  E  Y  K  Q  Y  I  D  Y  K  K  V  K  K  H  F  C  A  F  V  Y  E  A  N  F  H  I  *  Y  R  T  S  L  F  F  T  V  M  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104071" stop="103730"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVVTFGMSELGPWSLMDSSAQSGDVIMRMMARNSMSEKLAEDIDVAVKKLSDSAYEIALSQIRSNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVPAAVPTPAAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="104024" e_stop="103558"/>
            <exon e_start="103321" e_stop="103308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.592" e_score="0.982"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="104024" e_stop="103558" e_length="467"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.592">
            <gDNA_intron_boundary i_start="103557" i_stop="103322" i_length="236"/>
          </intron>
          <exon e_serial="2" e_score="0.571">
            <gDNA_exon_boundary e_start="103321" e_stop="103308" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104024" stop="103576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104013" stop="103624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103979" stop="103575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103974" stop="103577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103948" stop="103558"/>
              <exon start="103321" stop="103308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218307" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103926" stop="103558"/>
              <exon start="103321" stop="103308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103892" stop="103581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103829" stop="103563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAAT : AGAGAGAAATCAAT</gDNA_template>
            <first_frame> G  F  F  S  P  K  W  *  C  N  H  E  N  D  G  Q  E  L  D  V  R  K  A  S  *  R  H  *  C  C  C  E  E  A  F  R  Q  C  I  *  D  C  I  E  P  N  P  Q  Q  P  *  S  N  *  *  D  C  G  S  P  P  *  K  G  D  D  D  W  R  *  I  P  C  Y  S  L  R  I  C  *  N  S  C  *  K  P  R  P  C  C  C  S  Y  P  S  S  C  I  I  A  *  T  Y  T  A  T  C  T  I  H  I  H  L  S  P  *  F  D  L  E  Y  K  Q  Y  I  D  Y  K  K  V  K  K  H  F  C  A  F  V  Y  E  A  N  F  H  I  *  Y  R  T  S  L  F  F  T  V  I :   E  R  N  Q  </first_frame>
            <second_frame>  D  S  S  A  Q  S  G  D  V  I  M  R  M  M  A  R  N  S  M  S  E  K  L  A  E  D  I  D  V  A  V  K  K  L  S  D  S  A  Y  E  I  A  L  S  Q  I  R  S  N  R  E  A  I  D  K  I  V  E  V  L  L  E  K  E  T  M  T  G  D  E  F  R  A  I  L  S  E  F  V  E  I  P  A  E  N  R  V  P  A  A  V  P  T  P  A  A  V  *  *  L  E  H  I  L  Q  L  V  Q  F  T  Y  T  Y  P  P  N  L  I  *  S  I  N  N  I  *  T  I  R  K  L  K  N  T  F  V  H  L  C  M  K  Q  I  F  T  F  D  I  E  L  V  F  S  S  L  *   : *  R  E  I  N </second_frame>
            <third_frame>   I  L  Q  P  K  V  V  M  *  S  *  E  *  W  P  G  T  R  C  Q  K  S  *  L  K  T  L  M  L  L  *  R  S  F  Q  T  V  H  M  R  L  H  *  A  K  S  A  A  T  V  K  Q  L  I  R  L  W  K  S  S  L  K  R  R  R  *  L  E  M  N  S  V  L  F  S  Q  N  L  L  K  F  L  L  K  T  A  S  L  L  L  F  L  P  Q  Q  L  Y  N  S  L  N  I  Y  C  N  L  Y  N  S  H  T  L  I  P  L  I  *  S  R  V  *  T  I  Y  R  L  *  E  S  *  K  T  L  L  C  I  C  V  *  S  K  F  S  H  L  I  *  N  *  S  F  L  H  C  N  :  R  E  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104023" stop="103730"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSSAQSGDVIMRMMARNSMSEKLAEDIDVAVKKLSDSAYEIALSQIRSNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVPAAVPTPAAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="104029" e_stop="103560"/>
            <exon e_start="103321" e_stop="103309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.592" e_score="0.991"/>
          <exon-only e_score="0.615"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="104029" e_stop="103560" e_length="470"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.592">
            <gDNA_intron_boundary i_start="103559" i_stop="103322" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="0.615">
            <gDNA_exon_boundary e_start="103321" e_stop="103309" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104029" stop="103560"/>
              <exon start="103321" stop="103309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104024" stop="103576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104013" stop="103624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103979" stop="103575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103974" stop="103577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103892" stop="103581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103829" stop="103563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTA : AGAGAGAAATCAA</gDNA_template>
            <first_frame> L  M  D  S  S  A  Q  S  G  D  V  I  M  R  M  M  A  R  N  S  M  S  E  K  L  A  E  D  I  D  V  A  V  K  K  L  S  D  S  A  Y  E  I  A  L  S  Q  I  R  S  N  R  E  A  I  D  K  I  V  E  V  L  L  E  K  E  T  M  T  G  D  E  F  R  A  I  L  S  E  F  V  E  I  P  A  E  N  R  V  P  A  A  V  P  T  P  A  A  V  *  *  L  E  H  I  L  Q  L  V  Q  F  T  Y  T  Y  P  P  N  L  I  *  S  I  N  N  I  *  T  I  R  K  L  K  N  T  F  V  H  L  C  M  K  Q  I  F  T  F  D  I  E  L  V  F  S  S  L  * :   E  R  N  Q </first_frame>
            <second_frame>  S  W  I  L  Q  P  K  V  V  M  *  S  *  E  *  W  P  G  T  R  C  Q  K  S  *  L  K  T  L  M  L  L  *  R  S  F  Q  T  V  H  M  R  L  H  *  A  K  S  A  A  T  V  K  Q  L  I  R  L  W  K  S  S  L  K  R  R  R  *  L  E  M  N  S  V  L  F  S  Q  N  L  L  K  F  L  L  K  T  A  S  L  L  L  F  L  P  Q  Q  L  Y  N  S  L  N  I  Y  C  N  L  Y  N  S  H  T  L  I  P  L  I  *  S  R  V  *  T  I  Y  R  L  *  E  S  *  K  T  L  L  C  I  C  V  *  S  K  F  S  H  L  I  *  N  *  S  F  L  H  C   : K  R  E  I   </second_frame>
            <third_frame>   H  G  F  F  S  P  K  W  *  C  N  H  E  N  D  G  Q  E  L  D  V  R  K  A  S  *  R  H  *  C  C  C  E  E  A  F  R  Q  C  I  *  D  C  I  E  P  N  P  Q  Q  P  *  S  N  *  *  D  C  G  S  P  P  *  K  G  D  D  D  W  R  *  I  P  C  Y  S  L  R  I  C  *  N  S  C  *  K  P  R  P  C  C  C  S  Y  P  S  S  C  I  I  A  *  T  Y  T  A  T  C  T  I  H  I  H  L  S  P  *  F  D  L  E  Y  K  Q  Y  I  D  Y  K  K  V  K  K  H  F  C  A  F  V  Y  E  A  N  F  H  I  *  Y  R  T  S  L  F  F  T  V  :  R  E  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104029" stop="103730"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMDSSAQSGDVIMRMMARNSMSEKLAEDIDVAVKKLSDSAYEIALSQIRSNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVPAAVPTPAAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="103550" PGL_stop="104080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103550" e_stop="104080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="103550" e_stop="104080" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103550" stop="104080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103550" stop="104080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103551" stop="104080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGTAGCATTACAGTGAAGAAAAGACTAGTTCTATATCAAATGTGAAAATTTGCTTCATACACAAATGCACAAAAGTGTTTTTTAACTTTCTTATAGTCTATATATTGTTTATACTCTAGATCAAATTAGGGGGATAAGTGTATGTGAATTGTACAAGTTGCAGTATATGTTCAAGCTATTATACAGCTGCTGGGGTAGGAACAGCAGCAGGGACGCGGTTTTCAGCAGGAATTTCAACAAATTCTGAGAGAATAGCACGGAATTCATCTCCAGTCATCGTCTCCTTTTCAAGGAGGACTTCCACAATCTTATCAATTGCTTCACGGTTGCTGCGGATTTGGCTCAATGCAATCTCATATGCACTGTCTGAAAGCTTCTTCACAGCAACATCAATGTCTTCAGCTAGCTTTTCTGACATCGAGTTCCTGGCCATCATTCTCATGATTACATCACCACTTTGGGCTGAAGAATCCATGAGGGACCACGGGCCAAGTTCAGACATACCAAAAGTGACAACCATCTGCATGAA</gDNA_template>
            <first_frame> L  V  A  L  Q  *  R  K  D  *  F  Y  I  K  C  E  N  L  L  H  T  Q  M  H  K  S  V  F  *  L  S  Y  S  L  Y  I  V  Y  T  L  D  Q  I  R  G  I  S  V  C  E  L  Y  K  L  Q  Y  M  F  K  L  L  Y  S  C  W  G  R  N  S  S  R  D  A  V  F  S  R  N  F  N  K  F  *  E  N  S  T  E  F  I  S  S  H  R  L  L  F  K  E  D  F  H  N  L  I  N  C  F  T  V  A  A  D  L  A  Q  C  N  L  I  C  T  V  *  K  L  L  H  S  N  I  N  V  F  S  *  L  F  *  H  R  V  P  G  H  H  S  H  D  Y  I  T  T  L  G  *  R  I  H  E  G  P  R  A  K  F  R  H  T  K  S  D  N  H  L  H  E </first_frame>
            <second_frame>  S  *  H  Y  S  E  E  K  T  S  S  I  S  N  V  K  I  C  F  I  H  K  C  T  K  V  F  F  N  F  L  I  V  Y  I  L  F  I  L  *  I  K  L  G  G  *  V  Y  V  N  C  T  S  C  S  I  C  S  S  Y  Y  T  A  A  G  V  G  T  A  A  G  T  R  F  S  A  G  I  S  T  N  S  E  R  I  A  R  N  S  S  P  V  I  V  S  F  S  R  R  T  S  T  I  L  S  I  A  S  R  L  L  R  I  W  L  N  A  I  S  Y  A  L  S  E  S  F  F  T  A  T  S  M  S  S  A  S  F  S  D  I  E  F  L  A  I  I  L  M  I  T  S  P  L  W  A  E  E  S  M  R  D  H  G  P  S  S  D  I  P  K  V  T  T  I  C  M   </second_frame>
            <third_frame>   R  S  I  T  V  K  K  R  L  V  L  Y  Q  M  *  K  F  A  S  Y  T  N  A  Q  K  C  F  L  T  F  L  *  S  I  Y  C  L  Y  S  R  S  N  *  G  D  K  C  M  *  I  V  Q  V  A  V  Y  V  Q  A  I  I  Q  L  L  G  *  E  Q  Q  Q  G  R  G  F  Q  Q  E  F  Q  Q  I  L  R  E  *  H  G  I  H  L  Q  S  S  S  P  F  Q  G  G  L  P  Q  S  Y  Q  L  L  H  G  C  C  G  F  G  S  M  Q  S  H  M  H  C  L  K  A  S  S  Q  Q  H  Q  C  L  Q  L  A  F  L  T  S  S  S  W  P  S  F  S  *  L  H  H  H  F  G  L  K  N  P  *  G  T  T  G  Q  V  Q  T  Y  Q  K  *  Q  P  S  A  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103689" stop="104078"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYVNCTSCSICSSYYTAAGVGTAAGTRFSAGISTNSERIARNSSPVIVSFSRRTSTILSIASRLLRIWLNAISYALSESFFTATSMSSASFSDIEFLAIILMITSPLWAEESMRDHGPSSDIPKVTTICM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="106411" PGL_stop="111492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106411" e_stop="106501"/>
            <exon e_start="107062" e_stop="107425"/>
            <exon e_start="109942" e_stop="110087"/>
            <exon e_start="110276" e_stop="110423"/>
            <exon e_start="111133" e_stop="111339"/>
            <exon e_start="111420" e_stop="111492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="0.978"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.478" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="106411" e_stop="106501" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="106502" i_stop="107061" i_length="560"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="107062" e_stop="107425" e_length="364"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107426" i_stop="109941" i_length="2516"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109942" e_stop="110087" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="110088" i_stop="110275" i_length="188"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110276" e_stop="110423" e_length="148"/>
          </exon>
          <intron i_serial="4" don_prob="0.885" acc_prob="0.478">
            <gDNA_intron_boundary i_start="110424" i_stop="111132" i_length="709"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111133" e_stop="111339" e_length="207"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111340" i_stop="111419" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="111420" e_stop="111492" e_length="73"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106411" stop="106501"/>
              <exon start="107062" stop="107425"/>
              <exon start="109942" stop="110087"/>
              <exon start="110276" stop="110423"/>
              <exon start="111133" stop="111253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106461" stop="106501"/>
              <exon start="107062" stop="107425"/>
              <exon start="109942" stop="110087"/>
              <exon start="110276" stop="110413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106482" stop="106501"/>
              <exon start="107062" stop="107425"/>
              <exon start="109942" stop="110012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107139" stop="107425"/>
              <exon start="109942" stop="110087"/>
              <exon start="110276" stop="110423"/>
              <exon start="111133" stop="111262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107279" stop="107425"/>
              <exon start="109942" stop="110087"/>
              <exon start="110276" stop="110423"/>
              <exon start="111133" stop="111339"/>
              <exon start="111420" stop="111438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107353" stop="107425"/>
              <exon start="109942" stop="110087"/>
              <exon start="110276" stop="110423"/>
              <exon start="111133" stop="111339"/>
              <exon start="111420" stop="111492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107353" stop="107425"/>
              <exon start="109942" stop="110087"/>
              <exon start="110276" stop="110423"/>
              <exon start="111133" stop="111339"/>
              <exon start="111420" stop="111448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107353" stop="107425"/>
              <exon start="109942" stop="110087"/>
              <exon start="110276" stop="110283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107353" stop="107425"/>
              <exon start="109942" stop="110087"/>
              <exon start="110276" stop="110281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACGCAATCCTTGTTCGTCTTCTTCCTTCTATAACAGTCTCTCTCTCTCTGTTCTTTCCGCTTTACCGTTCTCTCTGCTTTTGCTAAAAG : GTGGCATTGATAATAGAATGTAAAACTGGATCAGTTAAGCACTACATGGATGTGTGATCATTGGTTTGATTTGCATTGTAGATCCAGCTTGTGGCAAACTGTGTTCTGGAAGGGTCTGCTGCTTGTGAAAGGCTGTTCTTGAAGGGTCTTCGAGCAATAGAGGACCCTTCAGGCTGGATTCTTGGTTTATTCGAAGCGGTTAGTCACAGTAAGATAAGTTTTGTTGTATAAGCGGTGGGTAAAGCGGTTGTCGGTTTGCTGAACATGCCAGCTGTACAGAAGCTTTATAACGCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGG : ATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCT : ATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAG : GTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACATCCTTTCTCCGCCTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGCGGATCTGCCAG : GTGAACTCGAGGTGGATGGAGTGACATTCTCCGACGTGACTTGGTTGGGAGAGTTTCAACTTCCCGATGACTT</gDNA_template>
            <first_frame> K  R  N  P  C  S  S  S  S  F  Y  N  S  L  S  L  S  V  L  S  A  L  P  F  S  L  L  L  L  K   : G  G  I  D  N  R  M  *  N  W  I  S  *  A  L  H  G  C  V  I  I  G  L  I  C  I  V  D  P  A  C  G  K  L  C  S  G  R  V  C  C  L  *  K  A  V  L  E  G  S  S  S  N  R  G  P  F  R  L  D  S  W  F  I  R  S  G  *  S  Q  *  D  K  F  C  C  I  S  G  G  *  S  G  C  R  F  A  E  H  A  S  C  T  E  A  L  *  R  L  *  S  I  T  F  T  Q  R  T  G  F  R  R  R  S  R  E  S  S  V  P  I  G :   *  N  Q  A  F  *  C  G  S  *  A  R  S  T  T  C  T  E  L  E  *  Y  S  A  R  A  Q  W  G  T  T  A  T  A  T  N  Q  I  P  A  L  T  *  M  *  Q  L  L   : Y  G  D  I  L  H  A  A  F  L  Y  H  T  S  T  Q  S  P  W  D  D  S  L  K  *  A  G  I  W  F  L  S  R  E  S  L  *  L  D  Q  Y  S  R  S  F  G  S  I  G  R :   C  K  T  G  K  A  R  *  R  L  *  H  D  C  S  V  W  D  N  C  S  V  S  Y  F  W  R  Q  H  P  L  F  Q  S  Y  N  S  L  C  Y  F  *  H  P  F  S  A  L  L  F  *  G  W  T  A  L  H  L  F  P  E  V  S  S  S  G  S  A  R :   *  T  R  G  G  W  S  D  I  L  R  R  D  L  V  G  R  V  S  T  S  R  *  L </first_frame>
            <second_frame>  N  A  I  L  V  R  L  L  P  S  I  T  V  S  L  S  L  F  F  P  L  Y  R  S  L  C  F  C  *  K  :  V  A  L  I  I  E  C  K  T  G  S  V  K  H  Y  M  D  V  *  S  L  V  *  F  A  L  *  I  Q  L  V  A  N  C  V  L  E  G  S  A  A  C  E  R  L  F  L  K  G  L  R  A  I  E  D  P  S  G  W  I  L  G  L  F  E  A  V  S  H  S  K  I  S  F  V  V  *  A  V  G  K  A  V  V  G  L  L  N  M  P  A  V  Q  K  L  Y  N  A  C  K  A  S  L  S  P  N  G  P  V  S  E  D  A  L  E  K  V  R  S  L  L   : D  K  I  K  P  S  D  V  G  L  E  Q  E  A  Q  L  V  R  S  W  N  S  T  L  H  E  R  N  G  E  L  Q  P  P  P  P  I  K  Y  L  H  L  H  E  C  D  S  F  S  :  M  G  I  F  C  M  P  P  S  S  I  I  P  L  H  N  H  P  G  M  T  V  L  S  K  L  V  Y  G  S  F  H  V  K  A  Y  D  W  I  N  I  P  G  P  L  V  P  L  E   : G  A  R  P  A  K  L  V  K  D  C  D  M  T  A  P  C  G  T  T  A  L  Y  P  T  S  G  G  N  I  H  C  F  K  A  I  T  P  C  A  I  F  D  I  L  S  P  P  Y  S  S  E  D  G  R  H  C  T  Y  F  R  R  S  P  V  A  D  L  P   : G  E  L  E  V  D  G  V  T  F  S  D  V  T  W  L  G  E  F  Q  L  P  D  D   </second_frame>
            <third_frame>   T  Q  S  L  F  V  F  F  L  L  *  Q  S  L  S  L  C  S  F  R  F  T  V  L  S  A  F  A  K  R :   W  H  *  *  *  N  V  K  L  D  Q  L  S  T  T  W  M  C  D  H  W  F  D  L  H  C  R  S  S  L  W  Q  T  V  F  W  K  G  L  L  L  V  K  G  C  S  *  R  V  F  E  Q  *  R  T  L  Q  A  G  F  L  V  Y  S  K  R  L  V  T  V  R  *  V  L  L  Y  K  R  W  V  K  R  L  S  V  C  *  T  C  Q  L  Y  R  S  F  I  T  L  V  K  H  H  F  H  P  T  D  R  F  Q  K  T  L  S  R  K  F  G  P  Y  W  :  I  K  S  S  L  L  M  W  V  L  S  K  K  H  N  L  Y  G  V  G  I  V  L  C  T  S  A  M  G  N  Y  S  H  R  H  Q  S  N  T  C  T  Y  M  N  V  T  A  S  L :   W  G  Y  F  A  C  R  L  P  L  S  Y  L  Y  T  I  T  L  G  *  Q  S  *  V  S  W  Y  M  V  P  F  T  *  K  P  M  I  G  S  I  F  Q  V  L  W  F  H  W  K  :  V  Q  D  R  Q  S  S  L  K  T  V  T  *  L  L  R  V  G  Q  L  L  C  I  L  L  L  E  A  T  S  I  V  S  K  L  *  L  L  V  L  F  L  T  S  F  L  R  L  T  L  L  R  M  D  G  I  A  L  I  S  G  G  L  Q  *  R  I  C  Q  :  V  N  S  R  W  M  E  *  H  S  P  T  *  L  G  W  E  S  F  N  F  P  M  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107293" stop="107425"/>
                    <exon start="109942" stop="110087"/>
                    <exon start="110276" stop="110423"/>
                    <exon start="111133" stop="111339"/>
                    <exon start="111420" stop="111490"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVGKAVVGLLNMPAVQKLYNACKASLSPNGPVSEDALEKVRSLLDKIKPSDVGLEQEAQLVRSWNSTLHERNGELQPPPPIKYLHLHECDSFSMGIFCMPPSSIIPLHNHPGMTVLSKLVYGSFHVKAYDWINIPGPLVPLEGARPAKLVKDCDMTAPCGTTALYPTSGGNIHCFKAITPCAIFDILSPPYSSEDGRHCTYFRRSPVADLPGELEVDGVTFSDVTWLGEFQLPDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="106468" e_stop="106501"/>
            <exon e_start="107143" e_stop="107425"/>
            <exon e_start="109942" e_stop="110087"/>
            <exon e_start="110276" e_stop="110423"/>
            <exon e_start="111133" e_stop="111339"/>
            <exon e_start="111420" e_stop="111492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.478" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106468" e_stop="106501" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="106502" i_stop="107142" i_length="641"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107143" e_stop="107425" e_length="283"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107426" i_stop="109941" i_length="2516"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109942" e_stop="110087" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="110088" i_stop="110275" i_length="188"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110276" e_stop="110423" e_length="148"/>
          </exon>
          <intron i_serial="4" don_prob="0.885" acc_prob="0.478">
            <gDNA_intron_boundary i_start="110424" i_stop="111132" i_length="709"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111133" e_stop="111339" e_length="207"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111340" i_stop="111419" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="111420" e_stop="111492" e_length="73"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106468" stop="106501"/>
              <exon start="107143" stop="107425"/>
              <exon start="109942" stop="110087"/>
              <exon start="110276" stop="110294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107279" stop="107425"/>
              <exon start="109942" stop="110087"/>
              <exon start="110276" stop="110423"/>
              <exon start="111133" stop="111339"/>
              <exon start="111420" stop="111438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107353" stop="107425"/>
              <exon start="109942" stop="110087"/>
              <exon start="110276" stop="110423"/>
              <exon start="111133" stop="111339"/>
              <exon start="111420" stop="111492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107353" stop="107425"/>
              <exon start="109942" stop="110087"/>
              <exon start="110276" stop="110423"/>
              <exon start="111133" stop="111339"/>
              <exon start="111420" stop="111448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107353" stop="107425"/>
              <exon start="109942" stop="110087"/>
              <exon start="110276" stop="110283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107353" stop="107425"/>
              <exon start="109942" stop="110087"/>
              <exon start="110276" stop="110281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCGCTTTACCGTTCTCTCTGCTTTTGCTAAAAG : ATCCAGCTTGTGGCAAACTGTGTTCTGGAAGGGTCTGCTGCTTGTGAAAGGCTGTTCTTGAAGGGTCTTCGAGCAATAGAGGACCCTTCAGGCTGGATTCTTGGTTTATTCGAAGCGGTTAGTCACAGTAAGATAAGTTTTGTTGTATAAGCGGTGGGTAAAGCGGTTGTCGGTTTGCTGAACATGCCAGCTGTACAGAAGCTTTATAACGCTTGTAAAGCATCACTTTCACCCAACGGACCGGTTTCAGAAGACGCTCTCGAGAAAGTTCGGTCCCTATTGG : ATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCT : ATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAG : GTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACATCCTTTCTCCGCCTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGCGGATCTGCCAG : GTGAACTCGAGGTGGATGGAGTGACATTCTCCGACGTGACTTGGTTGGGAGAGTTTCAACTTCCCGATGACTT</gDNA_template>
            <first_frame> S  A  L  P  F  S  L  L  L  L  K   : D  P  A  C  G  K  L  C  S  G  R  V  C  C  L  *  K  A  V  L  E  G  S  S  S  N  R  G  P  F  R  L  D  S  W  F  I  R  S  G  *  S  Q  *  D  K  F  C  C  I  S  G  G  *  S  G  C  R  F  A  E  H  A  S  C  T  E  A  L  *  R  L  *  S  I  T  F  T  Q  R  T  G  F  R  R  R  S  R  E  S  S  V  P  I  G :   *  N  Q  A  F  *  C  G  S  *  A  R  S  T  T  C  T  E  L  E  *  Y  S  A  R  A  Q  W  G  T  T  A  T  A  T  N  Q  I  P  A  L  T  *  M  *  Q  L  L   : Y  G  D  I  L  H  A  A  F  L  Y  H  T  S  T  Q  S  P  W  D  D  S  L  K  *  A  G  I  W  F  L  S  R  E  S  L  *  L  D  Q  Y  S  R  S  F  G  S  I  G  R :   C  K  T  G  K  A  R  *  R  L  *  H  D  C  S  V  W  D  N  C  S  V  S  Y  F  W  R  Q  H  P  L  F  Q  S  Y  N  S  L  C  Y  F  *  H  P  F  S  A  L  L  F  *  G  W  T  A  L  H  L  F  P  E  V  S  S  S  G  S  A  R :   *  T  R  G  G  W  S  D  I  L  R  R  D  L  V  G  R  V  S  T  S  R  *  L </first_frame>
            <second_frame>  P  L  Y  R  S  L  C  F  C  *  K  :  I  Q  L  V  A  N  C  V  L  E  G  S  A  A  C  E  R  L  F  L  K  G  L  R  A  I  E  D  P  S  G  W  I  L  G  L  F  E  A  V  S  H  S  K  I  S  F  V  V  *  A  V  G  K  A  V  V  G  L  L  N  M  P  A  V  Q  K  L  Y  N  A  C  K  A  S  L  S  P  N  G  P  V  S  E  D  A  L  E  K  V  R  S  L  L   : D  K  I  K  P  S  D  V  G  L  E  Q  E  A  Q  L  V  R  S  W  N  S  T  L  H  E  R  N  G  E  L  Q  P  P  P  P  I  K  Y  L  H  L  H  E  C  D  S  F  S  :  M  G  I  F  C  M  P  P  S  S  I  I  P  L  H  N  H  P  G  M  T  V  L  S  K  L  V  Y  G  S  F  H  V  K  A  Y  D  W  I  N  I  P  G  P  L  V  P  L  E   : G  A  R  P  A  K  L  V  K  D  C  D  M  T  A  P  C  G  T  T  A  L  Y  P  T  S  G  G  N  I  H  C  F  K  A  I  T  P  C  A  I  F  D  I  L  S  P  P  Y  S  S  E  D  G  R  H  C  T  Y  F  R  R  S  P  V  A  D  L  P   : G  E  L  E  V  D  G  V  T  F  S  D  V  T  W  L  G  E  F  Q  L  P  D  D   </second_frame>
            <third_frame>   R  F  T  V  L  S  A  F  A  K  R :   S  S  L  W  Q  T  V  F  W  K  G  L  L  L  V  K  G  C  S  *  R  V  F  E  Q  *  R  T  L  Q  A  G  F  L  V  Y  S  K  R  L  V  T  V  R  *  V  L  L  Y  K  R  W  V  K  R  L  S  V  C  *  T  C  Q  L  Y  R  S  F  I  T  L  V  K  H  H  F  H  P  T  D  R  F  Q  K  T  L  S  R  K  F  G  P  Y  W  :  I  K  S  S  L  L  M  W  V  L  S  K  K  H  N  L  Y  G  V  G  I  V  L  C  T  S  A  M  G  N  Y  S  H  R  H  Q  S  N  T  C  T  Y  M  N  V  T  A  S  L :   W  G  Y  F  A  C  R  L  P  L  S  Y  L  Y  T  I  T  L  G  *  Q  S  *  V  S  W  Y  M  V  P  F  T  *  K  P  M  I  G  S  I  F  Q  V  L  W  F  H  W  K  :  V  Q  D  R  Q  S  S  L  K  T  V  T  *  L  L  R  V  G  Q  L  L  C  I  L  L  L  E  A  T  S  I  V  S  K  L  *  L  L  V  L  F  L  T  S  F  L  R  L  T  L  L  R  M  D  G  I  A  L  I  S  G  G  L  Q  *  R  I  C  Q  :  V  N  S  R  W  M  E  *  H  S  P  T  *  L  G  W  E  S  F  N  F  P  M  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107293" stop="107425"/>
                    <exon start="109942" stop="110087"/>
                    <exon start="110276" stop="110423"/>
                    <exon start="111133" stop="111339"/>
                    <exon start="111420" stop="111490"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVGKAVVGLLNMPAVQKLYNACKASLSPNGPVSEDALEKVRSLLDKIKPSDVGLEQEAQLVRSWNSTLHERNGELQPPPPIKYLHLHECDSFSMGIFCMPPSSIIPLHNHPGMTVLSKLVYGSFHVKAYDWINIPGPLVPLEGARPAKLVKDCDMTAPCGTTALYPTSGGNIHCFKAITPCAIFDILSPPYSSEDGRHCTYFRRSPVADLPGELEVDGVTFSDVTWLGEFQLPDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 502 chains have been computed
$ 
$ memory statistics:
$ 1335944 bytes spliced alignments in total
$ 225 spliced alignments have been stored
$ 5937 bytes was the average size of a spliced alignment
$ 34384 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1719 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 580 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-22 20:09:47
-->
