<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 18:25:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331763" ref_strand="+" ref_description="SGN-U331763        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative, similar to SP:P18256 Threonyl-tRNA synthetase 2 (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Bacillus subtilis}; contains Pfam profiles PF00587: tRNA synthetase class II core domain (G, H, P, S and T), PF03129: Anticodon binding domain | chr2:1698463-1701268 REVERSE | Aliases: None(evalue: 8e-76, score=280) genbank/nr: putative(evalue: 5e-74, score=280)">
      <seq>aaagcagctcaaatgaagtacgttggcgctctggggaaaacaatggcgttatcactatcttcacgctctctcttcacttcctcttataaatccatttctcctctcagtagaaaccccttttcttccttcccaattcgtcagtatcgtattctttttgttcttgatccctctaacaacaacaacaacaacaaaactaaccggaacaagttgctgagacgtcgcacttctttctctacccatgcttccaccgccctacaagaagctcctgccccaaatgagaaaatggttctcccaactaacgagtcatcagatgggctacttcgaattcgccatacgtgtgctcatgttatggccatggcagtccaaaaactctacccgaatgcaaaagtgacaattgggccctggatcgataatggtttttattatgattttgatatggagcctttgactgacagtgacctgaagaggattaagaaggaaatggatcgaattatcagccgaaacttgcctcttgttagagaagaagttagccgggatgaagctcaaagaagaataatgtctatcaacgaaccttacaagatcgaaattttagagagcataaaggaggaaccaattaccatttatcatattggtgatgaatggtgggatctttgtgcgggacctcatgttgaaactacaggaaagattaacagaaaagctattgagcttgaatctgttgctggtgcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="-" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="9671" stop="5929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9371" g_stop="9036" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9035" i_stop="8453" i_length="583">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8452" g_stop="8306" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="483" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8305" i_stop="8151" i_length="155">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8150" g_stop="8003" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="631" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8002" i_stop="6327" i_length="1676">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6326" g_stop="6229" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="729" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="-" ref_id="SGN-U331763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9371" e_stop="9036"/>
          <exon e_start="8452" e_stop="8306"/>
          <exon e_start="8150" e_stop="8003"/>
          <exon e_start="6326" e_stop="6229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAGCTCAAATGAAGTACGTTGGCGCTCTGGGGAAAACAATGGCGTTATCACTATCTTCACGCTCTCTCTTCACTTCCTCTTATAAATCCATTTCTCCTCTCAGTAGAAACCCCTTTTCTTCCTTCCCAATTCGTCAGTATCGTATTCTTTTTGTTCTTGATCCCTCTAACAACAACAACAACAACAAAACTAACCGGAACAAGTTGCTGAGACGTCGCACTTCTTTCTCTACCCATGCTTCCACCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATGGTTCTCCCAACTAACGAGTCATCAGATGGGCTACTTCGAATTCGCCATACGGTAATGTTGATACTGGTTCCGTTTATGGGTATTCATGAAATTGAATTGTTTCCAGTTTTATCGTGTTTATAATTGAAAATATTAAGTGGGTCGATTACAGAAATTAGTATTGCTTAGTATATATACATTGTTGCTCAATATAGTTATCAGTAAAAAAATGCGTTTTTTATACTGTTTCCTAGATTACAGAAAGCTAATTTTCTTGTGAAGTAACTTGTTTAGTTTATAACTCATTGTATACTCCTTGTACATTTGTTGGATTTGGGAAGTTTGATTTTTTTTTAATAAGTGTGGTTTCCAACCCAGCTTGTGTGCACCTTTGACTAATTTCATAGGTAAATTTGTCTACCAAGGAAAAGAAATCATTTAATGTTGATTTGGGGAGTTTTTTTTCTTTTATTATACTCTATTAATGTTGTCGGATATGAGGTTTGTATTATCTGTTGCTTGTTTTTAGCGAGGATTGGTGTGTTTACTAGTTCATTATGTAGAATGCTGAGTTTTTATAGTTTAAATGTGACCAGTAGATTTTGGTAATATAAATTACCATTCTGAGGGTGGGTTGATGTGTTCTTTGCTGCAGTGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGGCCCTGGATCGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGTGACCTGAAGAGGATTAAGAAGGAAATGGTAAGCTAACTTGTGCTTTTTAGTGATTGTTAGAAAGTTACTCCCTCTGCCTCCCCACAAGGGTCCACTCCCCCTAAAGAACTAAAAAATAGTTTGATCTTGTCAATGAAGCTTTGATTTTTGGTTAGAGAATTGACATCTTAAATTTTCTCTAGGATCGAATTATCAGCCGAAACTTGCCTCTTGTTAGAGAAGAAGTTAGCCGGGATGAAGCTCAAAGAAGAATAATGTCTATCAACGAACCTTACAAGATCGAAATTTTAGAGAGCATAAAGGAGGAACCAATTACCATTTATCATATTGGTAAGACTTCGATTAATTGCTTCTGTTTAGTTTGAGAAACTTACTACGACGTACTTAATGTCATCCCACAAGTTTAGGAACTTGAATATAAAATATTACTTTAGCATATTGTACATGTTTTCTAACTAACACGATATGAACTTTTACTTTATGGTTGTATATGACTCATAAATGAGATTTGATCATGGGGAGTTAATTGAGAACCATAAACACTATATATTTCAGGACTTCACCCGGTGATTCGTTGAAATGAGTATCTTAAGTGCTCCGAATGATCTCAATAGAAGATTGTGGTATTCCACTTGAGCATTTTTGAGTGTATGAACCTTATCTATCTCTTGAGGATCTACTATTATACATGTTGACCTTAACTTAGTAGCTGTCTTGATGTCATTGTTATTTACAAATCATCATATGGTGGAGTGCTAGAGTAATTCTCGGAGGAAAACTTTTGGTCTTTGCTGCTAATTACATCCTTCCTGAAAGTGTTTCAAGTGGAATTTTCAGTACCCACCCTAGTAATTGTTGCAGGTTGTTCTGAATATATCGTTCTTTTGGTGAATTATATAGTTACTTCTTAATATTGCTAAAACATCAGGTTAAAAAATATTTTTATGTCAAGTATTATATTTCATTCTGTTCTGTGCTAAATTCACTTATACTTGTAACCAAGTCAAATGTTTTCACTTTAAGGGAATTTCATTTCTCGATATAGAAACTTACGTTTGTGGATGGCCAAAGGGATGTCATGGGAAGTGTTCCATGAACAGGTAAGTGAAGTTTCAGAGTTCCATCACAAAGGCTGTTAAGAAAGATATTGGCTCACTTTATGTCATAATGCACGAATTGAATCTAATGCTTAGATGGAAGGATGTAAAATATTGATATTGTAATAGTGCAATGAGTTCTGCAAGTTAGGTTGTTATTACTATTGTTAGTGCTAAAAAGAGAGGGAAACTGAATCTTGTACCTGGACGCCAGATGACTTGAACCTGGCTGGACTCATAGATAGTTGATTCGTAGTAAAATCTTACTTTTAATATTCCTGAACTTCTACCTCTTACTAAAACTTTGCCATTGAAGCCTTGTACCCCACCCTGGAAGCTTTGACAATTTTGCAGAGGTCTGCGGTGTGAGAACATGAGTCGTTAAGGTCAGAGTCAGCCAAATCAACTCTCCGGGATCTGGTCTCAATCCTTGTGGTACCAGATCAAAGTCAATAGTCCTTACCGTGCAAGAATCAAGCTTACATGCTGTTATTGGTGCTAACAATTATTGTTACTATAATACTTTTCAACTAAAAAGTGCTTCAGAAAATGTAGAATATGTGAACTTACTTAAAGAATTTACCAGCTGCTTCTCTAGAACATCATTTTTACAGCATTATTTTAGATATAGTTGACAGATTAGGATTCGATCGAGGAAGGGATTAAGACTTGTTAGAGGTGGACAAAGAAGGTTAAGTTTGGACTTCTCTAGCTAAAATTATCCATCAAAATGTAGGTTTAAGCCAATATTTGCATATCCATCCTTTATAAACCATAAAGCACCCAAGAGAGCTTCATCTCGTTGTTTGCTGAACTTGATCTGATTGTGGAAACATCCACATAAACCTATTGCTTTAACAACAAAGTACATTTTGCCTTTTCTCATGGTCAAATGCTTTCTTTTCGTAGGTGATGAATGGTGGGATCTTTGTGCGGGACCTCATGTTGAAACTACAGGAAAGATTAACAGAAAAGCTATTGAGCTTGAATCTGTTGCTGGTGCTTAC</genome_strand>
        <mrna_strand>AAAGCAGCTCAAATGAAGTACGTTGGCGCTCTGGGGAAAACAATGGCGTTATCACTATCTTCACGCTCTCTCTTCACTTCCTCTTATAAATCCATTTCTCCTCTCAGTAGAAACCCCTTTTCTTCCTTCCCAATTCGTCAGTATCGTATTCTTTTTGTTCTTGATCCCTCTAACAACAACAACAACAACAAAACTAACCGGAACAAGTTGCTGAGACGTCGCACTTCTTTCTCTACCCATGCTTCCACCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATGGTTCTCCCAACTAACGAGTCATCAGATGGGCTACTTCGAATTCGCCATACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGGCCCTGGATCGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGTGACCTGAAGAGGATTAAGAAGGAAATG...........................................................................................................................................................GATCGAATTATCAGCCGAAACTTGCCTCTTGTTAGAGAAGAAGTTAGCCGGGATGAAGCTCAAAGAAGAATAATGTCTATCAACGAACCTTACAAGATCGAAATTTTAGAGAGCATAAAGGAGGAACCAATTACCATTTATCATATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAATGGTGGGATCTTTGTGCGGGACCTCATGTTGAAACTACAGGAAAGATTAACAGAAAAGCTATTGAGCTTGAATCTGTTGCTGGTGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="-" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="15001" stop="14064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14701" g_stop="14364" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="-" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14701" e_stop="14364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATAAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAATCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGTTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTC-GATTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAA-CATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="+" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="14865" stop="15749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15165" g_stop="15449" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15165" e_stop="15449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTC-TTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGATATCTGACCATCTTCACTCTCTTTCGCGGATGGTTAGAACTAGAACAACGACTGCGCCAACACCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="-" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="16188" stop="15156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15888" g_stop="15456" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="-" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15888" e_stop="15456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTTGAGGTTTCAATTTCAAGAACTTATTGAAAAGTTCATGCTGGTCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTATTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTGAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="+" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="15223" stop="16376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15523" g_stop="16076" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15523" e_stop="16076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATAAATCAGGTGCTTGCTTATCTCAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAATACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGACCAGCATGAACTTTTCAATAAGTTCTTGAAATTGAAACCTCAAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="-" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="17701" stop="16389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17401" g_stop="16689" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17401" e_stop="16689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTGTTCTTCACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCCCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="-" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="19182" stop="18405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18882" g_stop="18706" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18882" e_stop="18706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATCGTTCACTCAGACTGACCATTG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335320" ref_strand="+" ref_description="SGN-U335320        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gggcagcggagcctcatgttttgtttaccactatgccgcatctatatgattaacatgatgatgatgatgatgactaccacgattcacgagaagaagatgaggatgaatggggtattgagatggatgttttactcgaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcttctctaggttcagagactctctttccaccaaagagtctgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="-" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="62095" stop="13043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26982" g_stop="26881" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26880" i_stop="23027" i_length="3854">
            <donor d_prob="0.000" d_score="0.57"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23026" g_stop="23010" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="119" r_length="17" r_score="0.706"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23009" i_stop="21987" i_length="1023">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21986" g_stop="21979" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="127" r_length="8" r_score="0.750"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21978" i_stop="19965" i_length="2014">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19964" g_stop="19736" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="356" r_length="229" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="-" ref_id="SGN-U335320" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26982" e_stop="26881"/>
          <exon e_start="23026" e_stop="23010"/>
          <exon e_start="21986" e_stop="21979"/>
          <exon e_start="19964" e_stop="19736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAAAAAAAAAAATTTTTTTATATTTTTTTTTTTGGAAAACAGGGTTTTTTTTTTCTAAAAAAAACATTTTTTTTTTTTGGATAAAAACCACAATTTCCCCCCTTGGATTTCAGTTTTTTTTTTTTTAATTTTAATATACCTTTTTGATTTATTTAACCCCCCTTTGTAATTTTACATTAGTTAAAAGGCAATCAAAGATGTTTCGAATTTCAGTTCACCCAAAAAAAATTTTCAAAATTTAAAAAAAAATTTTAAAGGGTTAATCCAATTTTTATTAGTTAAAACCTTTTTCTTAAATTTCGTTATTAATCTCCCCTTTTTCTAATTTTTATACGTTATTTTTTTTTATTTAGTTTTGTCCACATTGTGGTGGCAATTTTTTTTAATGAAAGTGACAAAATAACGATCAACTTATCATGATAAACCATATTTTATATTACTCACTCCGTCTACTTTACGTGATAATATTTTATCTTTACGTAAAATTTAAAAAGAATAAAAATAAAATTACGTAAATAAAATATTTATATAATTATAAATTATTTTATTACGTATAAACGATAATTTTAAAATTTAATTATTTTAATTATGAAAAGATTGAAATTTATTTTTAATTATAAAAAGTGGGTAATTGATAACCCCTTCAAATTCATATAATAATAGACTCTTAACATTATATTGCCGTTTGCCGAACATGATTTTATTAATATTGCCGATCGCTCAACGTATTCATGGAAAAGCCTTTATTTTATTCCATGTGTTTCAATTTATATATATAATATTTTTCAATTTATATATATAATATTTTTAAAATTTTGAGAGTTAGAATAACTTTTTAATATCATGATCTTCATTATTAATATATTTTGAATTGGCAATATTGTAATTTATATTATTATTTATATAGTTTTAAAATATATAGATTTTATTTTAAATATATTTAAGTTTACATTTCAAGAAAACTGTGAATTACATGAAATTTTTTTTGAGTATTAGCATGAAAATTTGCAGGATACTTATTTTCCTGTAAATTGACATACTAATTCCTAGAAAAATTTCTATGGAATTTATAGTTTTTTAATAGTATTTTATATTCGAATTTATGGTCAGAATGAAATTGATCGTAAGAATTTAAAAATACGATGTAAATCAAAGAGTATATAGGATAAAAAAGAAGTCAACATTATATTTCTTGAGGTCATGATGTTTATGGTGTTTGAACAATTTTTAAAAAAATATTATTTAGTGAAGTTTTTTATAAAAATAAAACAATAATTAGATAATCATTTTCCTCCTCCTTTTTTGGCAATTTTGTGATATTCCTAAAACCTTTTTCAGTTTCTTAAGTTGAAAAATATTTATTCTGCTTATTATTTTTTTTAAAAAAAAAATCAGTCAAATAGACTTGAAGATATGTTCGAAAATTTTGGATTTTAAAAAAATTATTGCCACCAAATTGGCTCTAGTTGCAACATAGGACAATTAAGACGATTATATTCTAAACAATTATTAAAATGTTGTTCTACATCGACCTTGTTCTACACATAAATTATTATTTTTTAAAATTTGGCTCATTTTAAAACAAATTAATTAAATAGTAAAAGACATGTAAATTTAAATAATTTTTCATTTGAAAAAATGGGTCAGAATATTACATTATTATATTATCTATTTACACTTTACATATATATTGTTCAACTACTCTCCTCAGCTAAATTGAATTATTCTCTTGTTCTATTACTAATTTCTCAAATCTAATAATTTAAAAAAAAAAATAGCACTTCCTATATGACCAAAATATCCAAATTACGTTCATTGATAGCAACATATTAAATTAGTAAATTCATGACTTTTCCAAGTTTGAAAGCAAAGATTTGTTTTGAGCACCAAGTCTAGTCATTTGTTGAAAAGTATTCAGTGTAAAAATAGAAAAAAATAGTAAAAAAATAAAATCAAACACCTTCCTAGTTACTTCCATTTGGAACCAACATGAATTGTGGTACATTGATAGAAGTGTTTTACCCTTAATCAGAAGAGGTTTTGAGTTCAAACCTGGATATGAAGAAAATTATATTAAAAGCGCTACGTCCGAATGAATCATATATTACGTGATTTAAATTTAATTAAAATTTCAATATATAGGCTCCGAACATCTAGTGAAAAACCTCAAAAAAAAAAATACTTCCGTTAGAACTCTTCATTGTATTTCTAATAATGTATACTTTGGTTTCCACATATACGCCTACGATTCTTCTTTTACCTCTTTTTTTTTTCGGTATCTCGTATTAAATGATTGAATTTTGATTCATATTGAAAAATTCAACTAGTGCGTAAAACCAACTTAACAAAAACATCTCACACTCCGGATACAAATTCAAAACCTTTTATTGAAGGAGTTAATAATTTCGTACTTAGGATTCAAAAATATATATTTTTTTTAAAAATTGTGATTTCGTATTAAAATTCAAACTCAAAATCTTTTTTGAAAAAAAAAAAAATTTTATACTTAGCACTTGAACTCAAAAGAAGTACTTGCGACTATACCAATATTTTTTTAGCGGTTACAATGCCTAAAATTCCACGTAAAGGAAGCGGTCAACTAACTCCTTCGAATTTGTCATCACCTACTTCATCTTCCTTTTTATTTTTCTCTTTCAAAAATCTATATAATCTAAGTTACTTTATCCCAAATTTTCAAACAAATAGTTCAATTTTTCTTGATTCAATCATCCCAAATCCCAAGAAAATCAATTCTTGCAACAATTTGGGACATACCCAATTTCTTGAATTTGAGTTTTTGCTGAGCAAAACAGAACAAAAAAAAACAGAGCACAAACATGGATATACTTTTAACAACTTTATTATTTTCATCAATCTTGCTTTCAACTCTATTTTCTACTAGTTATGGTCAGAATCAAAATTGCTCTGCTTTTGCATTCAGAAATAACCAAATATTTGCAACTTGTAATCCTCTGCCTCTACTAAACTCTGTTCTTCACTGGAGCTACCATCCAGATAACCATACAGTTGATCTTGCTTACAGACATGGAGGTGTACCAAATACAGATTGGGTAGCTTGGGGTTTAAATATTGATGGAACAATGATGGTTGGTTCACAATGTTTAGTTGCATTTAGAAATTCTAGTGGAGAAATTCATGCTTACACTTCCCCTGTTTCTAGTTATGCTACTCAGTTAACAGAGGGAGCTTTGAGTTTCAATGTTCCGAGAATTGAAGCTGAGTATTCCAACAATGAGTTCATTATCTTTGCGACTTTACAACTTCCTGCTGGAAGGACTAGTTTTAATCAAGCTTGGCAAAATGGTGCTGTTTCTGGTCAGGCTTTGACTGCTCATACTCAATCTGGTGATAACATGAGATCTTTTGGTAGTGTTGATTTTGCTAATGGAGAGTTAGGTGGTGGTGGTAGTTCAGTTACTTCTAGACAACGTAGAAGAAATGTGAGTAATTCGCGTACCCTTTCTTCTTCTTTTTTCGTTAGAATTTAACTTATATATACTGACAGTAGGTATCGATTAGAGTTGGTTTGGATCATTACTTTTGAATCTATTAGGGTTTGCTTTGGTACGAGGGATAAGAGATATAGGATGAGATAAAATCGCAGGTTTTTCCCAACCAAATGAGCCGTTATAATTTCATTACCTAGTTTAACAGACTCAATTTATCTTGAAAGTCCAATTGACTTAACCTTAAGTTGAACTCATCAAGTTGTTATGTGATACAACACGAAAACTACGTACAAATTTGGGTCAACTATATGAATCTTTGCTTACGATATTACTCATTTTTGTATCCACTACCCCTAAGAGCAACAAAGAATTTGACATGTTTGTAAATTTGACAGGTTCATGGAGTATTGAATGCAGTGAGTTGGGGAGTGTTAATGCCAATGGGTGCAGTATTTGCAAGGTACTTGAAGGTTTTCAAAGCAGCAAATCCAGCTTGGTTTTATATACATGTTGCTTGTCAAACTTCTGCATATATTGTTGGTGTTGCTGGATGGGGAACTGGTCTCAAACTTGGCAGTGATTCTACCGGTATCGAATTCACTACTCACAGGAACATTGGCATCACTCTCTTTTGCCTCGGAACACTTCAGGTAACGCATTAACTCTAAATCTTGAATTCACTCTTGCAAACATTTGCACACAAACAAAAGAGCTTAGTACATAACCGACCCCTCAAACTTTCCCCCTTTTTTTCATTTAGACACATGAGCTAAGGGTTTACACACATTTGATAGAGTATGTGCGACAGGTTCAACTGAACAAATTGTTTTTACTTATGTGAACGCATGAACTATAAATCTTGAATTCACTTTTGCAAACACATAAAAGAACGGATTTTTTTTGGTTTAATACATAGATGCCTCCCTCAAACTTGCTCGATGGTTTTATCATTTAGACACCTGAGCTAACGGTTATAGCCGACCTTCATTGTTACTAATTTGTATGATTACAAACATTGTAGGTATTTGCTTTGCTTCTGAGGCCAAAGCCAGACCACAAGTACAGATTATACTGGAACATCTACCACCATGCTGTTGGATACGCGGTAATAAGTCTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAATGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAATGGAACAAATGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTCTTTTTTTTTTTTAATTTTTGCAGATTGATATATATTCTTGTATACATCATATATGTTGAAAGACCACCTATTTGTGGTTTTATTTATTATTACTAGTTTTTTTTTTCATTCTATTATGTTTGAGTTTAATTTCTGTACACGAATAATATAATCTGCGAGAAGAGTAACTATTTATGATATGTTCATGTTAGAGACTAACTTTTAAATATAACCTGCGAGAAGAGTAACTATTTAAGACATGTTCAAATTAGAGACTATTATATTTGAGTTTAATTTCTGTGCACTAACAGTACAGCCTGCTAGAAGAGTAACTATTTAAGATATGTTCAAGTTAGAGACTAACTTTGAAATATAATCTGCGAGAAGAGTAACTATTTAAGACATGTTCATTAGAAACTATTATATTTGAGTTTAATTTCTGTGCACTAACAATATGTCACGACCCAAATCGGGCCGCGACTGGCACCCACACTTCCCTCCTGTGTGAGCGAACCAACCAAACCTAAATCTTAACATTTCAATATACTATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATGAAAACCAATTCAATAACTATTATTTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACTTCAAATTACTAAATCTAAGAGTTTCTAAGAAGCTAAAAATACATAAAAGTTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGAAGTAATGAAGACTGGCTAGAGTTACTGTTGAGTCGAAGATGACGGCACGCTTGCTGCACTCCACAATTAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATAAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGAGAATTATGTTCATTAGATTGAGTATATTAATCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCAGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTACGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGAAACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTTCCATTAATCTCATCACTTTAGTTCATCAAGCCTTCTTTTATACCAAGGGATCATCAATCTCAGTATCAAGGTAGATTAGGGTTTCTTTCAAGATTAAGATTCAATAGCTTCATCATGCTTACTTTATCACAATTATGAAATCATATTCATACAAGTATACAATTAAGCATATAGAAGGGTTTACAACACTACTCAATACATATCATTCGCTATTAAGAGTTTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGAATTTCCCAAAGCCTTGTGTTTTTCCTCTTCGTTCGTCTCTCTCTATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTCTTTTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGATGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGAC</genome_strand>
        <mrna_strand>GGGCAGCGGAGCCTCATGTTTTGTTTACCACTATGCCGCATCTATATGATTAACATGATGATGATGATGATGACTACCACGATTCACGAGAAGAAGATGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATGGGGTATTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTCGAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCTTCTCTAGGTTCAGAGACTCTCTTTCCACCAAAGAGTCTGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318705" ref_strand="+" ref_description="SGN-U318705        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: AT5G47530.1 | Symbol: None | auxin-responsive protein, putative, similar to auxin-induced protein AIR12 (GI:11357190) (Arabidopsis thaliana); similar to stromal cell derived factor receptor 2 (GI:20381292) (Mus musculus) | chr5:19298601-19300288 FORWARD | Aliases: MNJ7.12, MNJ7_12 (evalue: 1e-112, score=403) genbank/nr: gi|13785207|emb|CAC37355.1| putative membrane protein [Solanum tuberosum](evalue: 0, score=743)">
      <seq>ttttcttgattcaatcatcccaaatcccaagaaaatcaattcttgcaacaatttgggacatacccaatttcttgaatttgagtttttgctgagcaaaacagaacaaaaaaaaacagagcacaaacatggatatacttttaacaactttattattttcatcaatcttgctttcaactctattttctactagttatggtcagaatcaaaattgctctgcttttgcattcagaaataaccaaatatttgcaacttgtaatcctctgcctctactaaactctgttcttcactggagctaccatccagataaccatacagttgatcttgcttacagacatggaggtgtaccaaatacagattgggtagcttggggtttaaatattgatggaacaatgatggttggttcacaatgtttagttgcatttagaaattctagtggagaaattcatgcttacacttcccctgtttctagttatgctactcagttaacagagggagctttgagtttcaatgttccgagaattgaagctgagtattccaacaatgagttcattatctttgcgactttacaacttcctgctggaaggactagttttaatcaagcttggcaaaatggtgctgtttctggtcaggctttgactgctcatactcaatctggtgataacatgagatcttttggtagtgttgattttgctaatggagagttaggtggtggtggtagttcagttacttctagacaacgtagaagaaatgttcatggagtattgaatgcagtgagttggggagtgttaatgccaatgggtgcagtatttgcaaggtacttgaaggttttcaaagcagcaaatccagcttggttttatatacatgttgcttgtcaaacttctgcatatattgttggtgttgctggatggggaactggtctcaaacttggcagtgattctaccggtatcgaattcactactcacaggaacattggcatcactctcttttgcctcggaacacttcaggtatttgctttgcttctgaggccaaagccagaccacaagtacagattatactggaacatctaccaccatgctgttggatacgcggtaataagtctgagcatcgcgaatgtttacaaaggatttgatgcattgaatggacagaagaattggaagagggcttacactggtgtgatcatagccataggtgccattgctgttttattagaagcttttacttggttcattgtcattaaaaggaaaaaaacagactctaacaagcacacacaaaatggaacaaatggtactgttaatccttatggaaatgggactcatcaacaggcataacttaaaaatatcactttgaacatttttgtatgtttatatgttttttgttgtttggtcagattttgtctttttttttttttaatttttgcagattgatatatattcttgtatacatcatatatgttgaaagaccacctatttgtggttttatttattattactaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="-" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="24479" stop="21615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24179" g_stop="23431" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23430" i_stop="23027" i_length="404">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23026" g_stop="22772" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="1004" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22771" i_stop="22401" i_length="371">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22400" g_stop="21915" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1005" r_stop="1491" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1492" polyA_stop="1510"/>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="-" ref_id="SGN-U318705" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1490</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24179" e_stop="23431"/>
          <exon e_start="23026" e_stop="22772"/>
          <exon e_start="22400" e_stop="21915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTGATTCAATCATCCCAAATCCCAAGAAAATCAATTCTTGCAACAATTTGGGACATACCCAATTTCTTGAATTTGAGTTTTTGCTGAGCAAAACAGAACAAAAAAAAACAGAGCACAAACATGGATATACTTTTAACAACTTTATTATTTTCATCAATCTTGCTTTCAACTCTATTTTCTACTAGTTATGGTCAGAATCAAAATTGCTCTGCTTTTGCATTCAGAAATAACCAAATATTTGCAACTTGTAATCCTCTGCCTCTACTAAACTCTGTTCTTCACTGGAGCTACCATCCAGATAACCATACAGTTGATCTTGCTTACAGACATGGAGGTGTACCAAATACAGATTGGGTAGCTTGGGGTTTAAATATTGATGGAACAATGATGGTTGGTTCACAATGTTTAGTTGCATTTAGAAATTCTAGTGGAGAAATTCATGCTTACACTTCCCCTGTTTCTAGTTATGCTACTCAGTTAACAGAGGGAGCTTTGAGTTTCAATGTTCCGAGAATTGAAGCTGAGTATTCCAACAATGAGTTCATTATCTTTGCGACTTTACAACTTCCTGCTGGAAGGACTAGTTTTAATCAAGCTTGGCAAAATGGTGCTGTTTCTGGTCAGGCTTTGACTGCTCATACTCAATCTGGTGATAACATGAGATCTTTTGGTAGTGTTGATTTTGCTAATGGAGAGTTAGGTGGTGGTGGTAGTTCAGTTACTTCTAGACAACGTAGAAGAAATGTGAGTAATTCGCGTACCCTTTCTTCTTCTTTTTTCGTTAGAATTTAACTTATATATACTGACAGTAGGTATCGATTAGAGTTGGTTTGGATCATTACTTTTGAATCTATTAGGGTTTGCTTTGGTACGAGGGATAAGAGATATAGGATGAGATAAAATCGCAGGTTTTTCCCAACCAAATGAGCCGTTATAATTTCATTACCTAGTTTAACAGACTCAATTTATCTTGAAAGTCCAATTGACTTAACCTTAAGTTGAACTCATCAAGTTGTTATGTGATACAACACGAAAACTACGTACAAATTTGGGTCAACTATATGAATCTTTGCTTACGATATTACTCATTTTTGTATCCACTACCCCTAAGAGCAACAAAGAATTTGACATGTTTGTAAATTTGACAGGTTCATGGAGTATTGAATGCAGTGAGTTGGGGAGTGTTAATGCCAATGGGTGCAGTATTTGCAAGGTACTTGAAGGTTTTCAAAGCAGCAAATCCAGCTTGGTTTTATATACATGTTGCTTGTCAAACTTCTGCATATATTGTTGGTGTTGCTGGATGGGGAACTGGTCTCAAACTTGGCAGTGATTCTACCGGTATCGAATTCACTACTCACAGGAACATTGGCATCACTCTCTTTTGCCTCGGAACACTTCAGGTAACGCATTAACTCTAAATCTTGAATTCACTCTTGCAAACATTTGCACACAAACAAAAGAGCTTAGTACATAACCGACCCCTCAAACTTTCCCCCTTTTTTTCATTTAGACACATGAGCTAAGGGTTTACACACATTTGATAGAGTATGTGCGACAGGTTCAACTGAACAAATTGTTTTTACTTATGTGAACGCATGAACTATAAATCTTGAATTCACTTTTGCAAACACATAAAAGAACGGATTTTTTTTGGTTTAATACATAGATGCCTCCCTCAAACTTGCTCGATGGTTTTATCATTTAGACACCTGAGCTAACGGTTATAGCCGACCTTCATTGTTACTAATTTGTATGATTACAAACATTGTAGGTATTTGCTTTGCTTCTGAGGCCAAAGCCAGACCACAAGTACAGATTATACTGGAACATCTACCACCATGCTGTTGGATACGCGGTAATAAGTCTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAATGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAATGGAACAAATGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTC-TTTTTTTTTTTTAATTTTTGCAGATTGATATATATTCTTGTATACATCATATATGTTGAAAGACCACCTATTTGTGGTTTTATTTATTATTACTA</genome_strand>
        <mrna_strand>TTTTCTTGATTCAATCATCCCAAATCCCAAGAAAATCAATTCTTGCAACAATTTGGGACATACCCAATTTCTTGAATTTGAGTTTTTGCTGAGCAAAACAGAACAAAAAAAAACAGAGCACAAACATGGATATACTTTTAACAACTTTATTATTTTCATCAATCTTGCTTTCAACTCTATTTTCTACTAGTTATGGTCAGAATCAAAATTGCTCTGCTTTTGCATTCAGAAATAACCAAATATTTGCAACTTGTAATCCTCTGCCTCTACTAAACTCTGTTCTTCACTGGAGCTACCATCCAGATAACCATACAGTTGATCTTGCTTACAGACATGGAGGTGTACCAAATACAGATTGGGTAGCTTGGGGTTTAAATATTGATGGAACAATGATGGTTGGTTCACAATGTTTAGTTGCATTTAGAAATTCTAGTGGAGAAATTCATGCTTACACTTCCCCTGTTTCTAGTTATGCTACTCAGTTAACAGAGGGAGCTTTGAGTTTCAATGTTCCGAGAATTGAAGCTGAGTATTCCAACAATGAGTTCATTATCTTTGCGACTTTACAACTTCCTGCTGGAAGGACTAGTTTTAATCAAGCTTGGCAAAATGGTGCTGTTTCTGGTCAGGCTTTGACTGCTCATACTCAATCTGGTGATAACATGAGATCTTTTGGTAGTGTTGATTTTGCTAATGGAGAGTTAGGTGGTGGTGGTAGTTCAGTTACTTCTAGACAACGTAGAAGAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGGAGTATTGAATGCAGTGAGTTGGGGAGTGTTAATGCCAATGGGTGCAGTATTTGCAAGGTACTTGAAGGTTTTCAAAGCAGCAAATCCAGCTTGGTTTTATATACATGTTGCTTGTCAAACTTCTGCATATATTGTTGGTGTTGCTGGATGGGGAACTGGTCTCAAACTTGGCAGTGATTCTACCGGTATCGAATTCACTACTCACAGGAACATTGGCATCACTCTCTTTTGCCTCGGAACACTTCAG...................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCTTTGCTTCTGAGGCCAAAGCCAGACCACAAGTACAGATTATACTGGAACATCTACCACCATGCTGTTGGATACGCGGTAATAAGTCTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAATGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAATGGAACAAATGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTCTTTTTTTTTTTTTAATTTTTGCAGATTGATATATATTCTTGTATACATCATATATGTTGAAAGACCACCTATTTGTGGTTTTATTTATTATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330350" ref_strand="+" ref_description="SGN-U330350        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT2G04850.1 | Symbol: None | auxin-responsive protein-related, related to auxin-induced protein AIR12 GI:11357190 (Arabidopsis thaliana) | chr2:1704280-1705775 FORWARD | Aliases: F28I8.9, F28I8_9 (evalue: 1e-59, score=225) genbank/nr: At2g04850(evalue: 9e-58, score=225)">
      <seq>atgtttcttcccttctttctcattttcctctcttttttccccttcacaatgagtcttttcctctcattcatgcacaacctcaacatctactaaaacatttgaaaaatgtatgccactcccttcacaagatgcctcaattgcttggacattccatccacataatgtcacatttgatatagtcttttttggttcatttatatctccttctggttgggttggatttggtattaaccctaactcccctgaaatgacaggaactcgcgcgttaatcgcctttcctgatccaaattcaggccagcttgttcttctaccatacataattgatccatcagtcaagctccaaaaaagtccacttttatcgaaacctttagacattcatttagtagcctcttcatcaactttatatggtggcaaaatggctactatacataatggtgctacaattcaaatatatgccacattaaaacttgtgtccaataagaccaaaaatgtacattttgtttggaaccgtggcatttatgtacaaagctattcaccaacgattcatccaactaacataaatgatctttcttcaatagccacaattgatgtccgtttcagttcacgatcaacatgtcacaacaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="+" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="29837" stop="31064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30137" g_stop="30764" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="+" ref_id="SGN-U330350" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30137" e_stop="30764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTCTTCCCTTCTTTCTCATTTTCCTCTCTTTTTTCCCCTTCACAAT-AGTCTTTTCCTCTCATTCATGCACAACCTCAACATCTACTAAAACATTTGAAAAATGTATGCCACTCCCTTCACAAGATGCCTCAATTGCTTGGACATTCCATCCACATAATGTCACACTTGATATAGTCTTTTTTGGTTCATTTATATCTCCTTCTGGTTGGGTTGGATTTGGTATTAACCCTAACTCCCCTGAAATGACAGGAACTCGCGCGTTAATCGCCTTTCCTGATCCAAATTCAGGCCAGCTTGTTCTTCTACCATACATAATTGATCCATCAGTCAAGCTCCAAAAAAGTCCACTTTTATCGAAACCTTTAGACATTCATTTAGTAGCCTCTTCATCAACTTTATATGGTGGCAAAATGGCTACTATACATAATGGTGCTACAATTCAAATATATGCCACATTAAAACTTGTGTCCAATAAGACCAAAAATGTACATTTTGTTTGGAACCGTGGCATTTATGTACAAGGCTATTCACCAACGATTCATCCAACTAACATAAATGATCTTTCTTCAATAGCCACAATTGATGTCCTTTCAGGTTCACAATCAACATGTCACAACAATTTCT</genome_strand>
        <mrna_strand>ATGTTTCTTCCCTTCTTTCTCATTTTCCTCTCTTTTTTCCCCTTCACAATGAGTCTTTTCCTCTCATTCATGCACAACCTCAACATCTACTAAAACATTTGAAAAATGTATGCCACTCCCTTCACAAGATGCCTCAATTGCTTGGACATTCCATCCACATAATGTCACATTTGATATAGTCTTTTTTGGTTCATTTATATCTCCTTCTGGTTGGGTTGGATTTGGTATTAACCCTAACTCCCCTGAAATGACAGGAACTCGCGCGTTAATCGCCTTTCCTGATCCAAATTCAGGCCAGCTTGTTCTTCTACCATACATAATTGATCCATCAGTCAAGCTCCAAAAAAGTCCACTTTTATCGAAACCTTTAGACATTCATTTAGTAGCCTCTTCATCAACTTTATATGGTGGCAAAATGGCTACTATACATAATGGTGCTACAATTCAAATATATGCCACATTAAAACTTGTGTCCAATAAGACCAAAAATGTACATTTTGTTTGGAACCGTGGCATTTATGTACAAAGCTATTCACCAACGATTCATCCAACTAACATAAATGATCTTTCTTCAATAGCCACAATTGATGTCCGTTTCAGTTCACGATCAACATGTCACAACAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346199" ref_strand="+" ref_description="SGN-U346199        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G04850.1 | Symbol: None | auxin-responsive protein-related, related to auxin-induced protein AIR12 GI:11357190 (Arabidopsis thaliana) | chr2:1704280-1705775 FORWARD | Aliases: F28I8.9, F28I8_9 (evalue: 5e-70, score=261) genbank/nr: gi|67848456|gb|AAY82261.1| hypothetical protein At2g04850 [Arabidopsis thaliana] (evalue: 4e-68, score=261)">
      <seq>tttttaaaaattttaaacttgcaaaatcttttttcaaattatattttgaacaatcaaattacaaataacgacatacatgatgatacatgtgatacaataatttaatcaaccatgacttgatccactaaatttggcagaactcccaattaatccctctctcctcatcttatcttcctttgcttttctacaaaacacaacccaagaattcacttctaatgccacagcaaccccaatcaatgtagacaaacacaaacaataacccaatttaacataagaccttccttctcccatcacttcaaatccttgaaaaacattcacaactcctaataccacacaaccataaccaacaaaatgatgatatgatttccaatacttcctaaacttgtttgttgtcttaggcctaaaaaacaatgccaatgtttgtaacatgcccaaaacaaacgtcgcgatccctaaatttcgatgtaatccatacactctccctcctgaaagttgccctaatcgaatccctattgcaaatccaatagtacctaatgaaatccctgataaatgtccccctgcatgtacataaaaccatgttgccactagggactcaacatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="-" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="31740" stop="30551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31440" g_stop="30851" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="603" r_length="590" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="-" ref_id="SGN-U346199" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31440" e_stop="30851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTGCAAAATCTTAGTTCAAATTATATTTTGAACAATCAAATTACAAATAACGACATACATGATGATACATGTGATACAATAATTTAATCAACCATGACTTGATCCACTAAATTTGGCAGAACTCCCAATTAATCCCTCTCTCCTCATCTTATCTTCCTTTGCTTTTCTACAAAACACAACCCAAGAATTCACTTCTAATGCCACAGCAACCCCAATCAATGTAGACAAACACAAACAATAACCCAATTTAACATAAGACCTTCCTTCTCCCATCACTTCAAATCCTTGAAAAACATTCACAACTCCTAATACCACACAACCATAACCAACAAAATGATGATATGATTTCCAATACTTCCTAAACTTGTTTGTTGTCTTAGGCCTAAAAAACAATGCCAATGTTTGTAACATGCCCAAAACAAACGTCGCGATCCCTAAATTTCGATGTAATCCATACACTCTCCCTCCTGAAAGTTGCCCTAATCGAATCCCTATTGCAAATCCAATAGTACCTAATGAAATCCCTGATAATTGTACCCCTGCATGTACATAAAACCATGTTGCCCCTAGGGACTCAACATGCCT</genome_strand>
        <mrna_strand>TAAACTTGCAAAATCTTTTTTCAAATTATATTTTGAACAATCAAATTACAAATAACGACATACATGATGATACATGTGATACAATAATTTAATCAACCATGACTTGATCCACTAAATTTGGCAGAACTCCCAATTAATCCCTCTCTCCTCATCTTATCTTCCTTTGCTTTTCTACAAAACACAACCCAAGAATTCACTTCTAATGCCACAGCAACCCCAATCAATGTAGACAAACACAAACAATAACCCAATTTAACATAAGACCTTCCTTCTCCCATCACTTCAAATCCTTGAAAAACATTCACAACTCCTAATACCACACAACCATAACCAACAAAATGATGATATGATTTCCAATACTTCCTAAACTTGTTTGTTGTCTTAGGCCTAAAAAACAATGCCAATGTTTGTAACATGCCCAAAACAAACGTCGCGATCCCTAAATTTCGATGTAATCCATACACTCTCCCTCCTGAAAGTTGCCCTAATCGAATCCCTATTGCAAATCCAATAGTACCTAATGAAATCCCTGATAAATGTCCCCCTGCATGTACATAAAACCATGTTGCCACTAGGGACTCAACATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332130" ref_strand="+" ref_description="SGN-U332130        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr3:2492279-2495756 FORWARD | Aliases: F17A17.15(evalue: 3e-11, score=66.2) genbank/nr: gi|18398061|ref|NP_566321.1| heterogeneous nuclear ribonucleoprotein (hnRNP), putative [Arabidopsis thaliana] gi|16930693|gb|AAL32012.1| AT3g07810/F17A17_15 [Arabidopsis thaliana] gi|23297627|gb|AAN12995.1| putative RNA-binding protein [Arabidopsis thaliana](evalue: 2e-09, score=66.2)">
      <seq>cctttgcagtagctggaaatgggaacaccggggctggaaactttagcaacactggagtttggggttcatcttcaatttcccctcaaggtagaggaaatgtttctaaccaaagtggaaatcttggttatgggggtgatgatagtttatatgggttgactggaggctatggaagaaatgttacatcaagtggggctcctacctcatcatatcctgcatctaatggtagctatgatgggcctttagctgatttttacagtggtggtttgggatatagtgattccacttggcgctctgcaaattctgagcgagatggatctggttcaattggttatggactcggcaatgcaccctcagacatgccacctaaaaattctgctagttatgttggcagttatggtgttggtaaaagacagtcaaacagcgggattggtggctaggagcatattggcaagcaagggtgttacattaggtgaaactttggtgtagaatttgaatcatgaattttgcgtacttctatagctatatgaagttgaggtgttaaagaattggatatccttttgtagggctaactggagttgcttgttttgaaggtctagagatagaagtttacaagattttgtgcttaagggttttttgttttgggtttatgtctttaggagttccccctttttgttttccttgagtgaggtgtaaaatcagattgcggcatatagtcagaaatgtatcgtgcatctctggtgaggcaacgatacatacaaaaacaacatagacagaaagttttgcgtaaaatctttagagttaaatgttttttgctgtaacgttgcagattctcgtctggtaatgtgtttgttctgtagtttcccttaaatgggattttccttttttttcatttggatgtaagggaggttgttgatttagtgtgatacattttagggatacccatctagggtctcctaatgaataatttactgcatattgatgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="-" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="47493" stop="36848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47193" g_stop="46771" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46770" i_stop="37709" i_length="9062">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37708" g_stop="37149" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="983" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="984" polyA_stop="993"/>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="-" ref_id="SGN-U332130" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>983</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47193" e_stop="46771"/>
          <exon e_start="37708" e_stop="37149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGCAGTAGCTGGAAATGGGAACACCGGGGCAGGAAACTTTAGCAACACTGGAGTTTGGGGTTCATCTTCAATTTCCCCTCAAGGTAGAGGAAATGTTTCTAACCAAAGTGGAAATCTTGGTTATGGGGGTGATGATAGTTTATATGGGTTGACTGGAGGCTATGGAAGAAATGTTACATCAAGTGGGGCTCCTACCTCATCATATCCTGCATCTAATGGTAGCTATGATGGTCCTTTAGCTGATTTTTACAGTGGTGGTTTGGGATATAGTGATTCCACTTGGCGCTCGGCAAATTCTGAGCGAGATGGATCTGGTTCAATTGGTTATGGACTCGGCAATGCACCCTCAGACATGCCACCTAAAAATTCTGCTAGTTATGTTGGCAGTTATGGTGTTGGTAAAAGACAGTCAAACAGCGGTAAGCTTCTCACTATCCCTTTAAAGCCAGAGGTTGCTTCACCTCGCTAAATTTTCTTTTAATTTTCTGATGAACTTGGATAATGTTGTTGATACCATGATTTGTCATCAGAAGCAGGTGATTAACACACTTCCTTCTTTTGTCTTACGACCTTTATACATCTAGGTTTTTTCTTTTTGAAATTAAGTGCAAGAATCTTTATAGGGATTCACTCTGTAGAGAAGCATCTCTCATACTTGCATGTATGATGTTATGTCTAACTACTTTAACTTGGCATCAAGTTCTTTTTCTAGAGCATGCTTGTGCTTCAGATTTTTGTTTACTCACTTCTAAAACTGCATTATGATTAAGAAGCCGTGTAGCTCGGACTCTTCAAAAACGGATGCATGTCGGAACGTCCAAAGGTAGTGCTCTTTTGGAGGATCTGACATGGGTGCAACAACATAGTTGGAGAGTCTGAGCAACATAGATTAGAAGCACAACATTGTGAGTCAATGTACATAATTCCATTTACTTAAAAAGAAGGAGAGTCTCATGTCATTTTAAAATTATGGTGGATTAAAACAAGAAGGATCTCTGGATATTAGTTGAACCATTGATAAAAGGAAGCTTGAAAGGAGCTACAAGTTGGCCATTTGTGATTTATTTTAGGTTTAGTGCAGTTGCTTATTTCTCTGTAATGTAACCTTTTAGATTGTATTACTAAAGCCGTTTGCTTAATCGATGAAAGTGACATAGTGATATAAAGCAAGTGATGCAACTTCAAAGGAGCATACTCTTTAAAACTTTAGGTGCAAAGCGATCTATGTGAGAGACAAATGTTTCTTTTACCATTTCCAAAAGAAGATAAGGAAAAAAGAAGCAAATGTTTCTCTCAGCCCAACTTTAAAAGTTGACAAGAAGAGAAAAGTACAACAATATATATGCCTCTTGCTACCTGAGTACTAGGATCCCTCTCTATGTACACTTCAGTGTTCTCTTGATTGTCTTCTTCTATTGTTTAGGCACACTTGTTTTCTTCTTCCCTCCTCCTCCTCCTCCTCCTCCTCCAATTTTATGATTTATAGGCTTATTGTAGGATTTAAAAAAACTGACTCTTGCAATCAAAGGTAAACCTTTTTATTTTTATATTCTCCAAGTTATAATTTATAAGCTTATTATTATTTATTAGGATAAGAAAAAATGACACTTGCAATGAAAGCTAATGCTAAATATTCAGCAAAACAATTCAATATGAAAGTGAATGTAAATCTTTTATCATTAATTAACTGAAAACTGAAATTCAATGCATTGATTGAAGATTGAACTTATCAATTATTTGACAGAAGTAATTTCATGCTGGTATGTAAATTTGAGTTGGCTTGTTGGAATTAACATTTGTCCATGTTGTATATTGGATGTTATGATTATTATAATTATAATTCGATGTTATAAACATAATATTGCTATGTAAGTTACCCCTTTGTTGCAATTTGTTGTCTTACTTTCCGTTTTAGACTGTTACAAAAAAAATGCGTCTTTCCTTTTTTGGCAACTCTTTAATTTTATCTTTCCACATGACATGTTTAAGACCACAAGATTAAAAGACATTTTGGTACATTCCACATATCTTTAATTTAAAACCACAAGATTCAAATGTCTTCTTTATCTTTTTAAACTCCGTGCCAAGTCGAAACCAAACAAATAAATTTAAAAGGAGGGAGTAATATTTTTTCCGTATATATTCACCTTTCTTTGAAAAGCATGTACGTTGTTTCTTATTCGTTACTCTCATTAAAAGTCCAAGAAATCTTGTTGATTTTTTTAATTTTTTTTTGCTTTCTTACTTTCAGCTGATTCTAGCTGTTTCTGATCTTGCTTCATCCAGATTTGGTAATGACTTGCTAATGTTATGTGTTAATTCTTCATAAATATTGGGTTTCCATGATTAACAATATTTTTTTCATAATTGAACTTTTTTCATTCTCTACGGGAATTTAGGCGTGATGATGTACTCTGTCGTTATTGTTAGACTTCTATGTTCTGTTGTGCATCAAAGACACTGACCTAAAAATACAAGTGAGTTGATTGAGAATCTTGAAGTCTCAGGTTCTAATTCCGCCGGAGGCAAAAAACTATAGGTGATTTCTTTCCATATGTTCAAGCTTTAGTGGAAAAAGTGACTCGGTACCTGTGCTGGTGGGAGGTAGCAGGTATCTAGTGGAACTAGTTGAGGTGCACGCAAGTTGAACTAGATACCAGGATTATACAAAAAGAAAAGTAATCGCTCATGGTTTCAGGTGGAGTAACTTTTCCGGTGAATTGTGTTCAAATCGACGCATTACCAATCAAAATGACCATTAAACAACTGGTTGGTACTTGTATGTAGGATCAAAGACCAAAAATCATCAAAATTTTATGGATAAAGCAGATGATAGGATATCATTTCGAAATCTTGAACTTAAGATAAAGTATGATCTTCCCGATCTTAAAGGATACAAGGCAAAATTAAGAGATGGAATTTGAGAACTTTCTTTTTCTGAATAGATCATTACTATACCATATCCTTTTCATGCCTCGTATCTTTTTATAATTTATTTTTGATACAACAACAATAACATACCTAGTGTAATTCCAAAAGTGGGTCTTGGGATGGTAGGATGTATGCAAACCTTACCTCTAGCGTTGCGGGATAGAGAGACTGTTTTTGATAGATTCTTAGCTCAAAATAAATGTAATTGATGCATGAAAGTAAGAAAGAGAAAGAGACATCAAAACAACCAATGTACAAAACAAGGGGAATAATATATATCAATACACATGGGAAAAGGAAACTACGTGATGCCTAAATTCATACTACTAGAAGTACGACAACACTCGACTACCTACTCCTCGGCCTCCATACTTCCTAGGTAGGCCATGTCCTAATTCAGCTGAAGTTGTTCGGTGTCCTGTCTAATCACACGCACCCCACCCCTGCACCCCCCAGTTTTTTCGGCCTACCTCCTGCTACAAACAACCACAACCTCTCACACCTCCTAATTTGCACATCCTCACACTTTCTCTTCATATGTCCAAACCATCTCAACCTTATCTTGTCCACTATGGCGGCTGCTCCCACCTTGTCCCGTATAACTTCGTTCTTAAACATATCTCTCCTAGTATACCCACACATCCATTTGAGCATCCTCATAATCTAAACATGAACATTCTTATTAGCAAGTACTCTTAATTCTGCCCCATACAATAGTGTGGGTCTAACCATCACTTTTGAGGAGTTACCTTTAAATCTTAGCGACACATACTTTTTGTACAATACTTTAGTATCTCCATTTCACCCAACATGCACCAATACAGTGTGTGACATCATCGTCATTGCCACGTCTCCTTCAATTATGGACCCAAGATACTTAAAGCTTTCTTTCTAAGGTATGTCTAGTGCATCGATATCGCTTCCGCTTCCACCTCCACTTCGTGTGTCATGGTGCTGGCCTTGCACTCTAGGTACTCTGTCTAGTTATGCTTAATCTGGAACCTTTAAACTTTAAGGCCTTTTTCCGAACTTCCTGCCTAGCGTTAACTCCATCATGCATTTCACCAATCAATATTATGTCATATGGAATAACATACACCATGACACCTCCCTTTGAAAATGTCGTGTCAATTCGTCCATCGCTAATACAAAAAGGAACGGCTAAGGGTTGATTCCTGATGCAACCCAATCATGACTAGAAAGTGGTCCAAGTCTTTTTCCACTATCCTAACCCAGGATGGGCTCCATTGTGCATGTCTTTAATAATCCTAATGTACACCATAGATATCCCTCTAAATAATTTACATTTGATACAATAGGCTTTTTCTATGTGGTGTCTCTCTTTCATACAATCCCTTTGATAGACTTGGACGACTTTGGGGTACTCTTTAGCTTTGGTACAATTTTGAATTTCCGTAGAGGACAATTATCCTTTTCTTATGAAGGCAAATATTTTATTGATGTCGGGATAAGAAACTCCTGCATACAAGTAGTATACCAAAAAGTAAAGAACCTATACCAAAATATGGTTCTATACAGAAGTTATCCCATCATCCATACAAGTAGAACCTCACGGGTGCATATAAAAGAACTAAAAACACAGGGCTATTCCTCAGGCATGTCATTCTCGACTGCTTCAAATCCTTTCCTATTCCTCACTTTCCAAATCACCCACATAGGGGCTAGAGGGATAACATCTTCTGCCCTTGGTCTTCTGTTCTTTTTCCTGAAATCCTAACTGCACACTGCTCTCTTTACTGTGTCTGGCATCACCCCATAGTACTCTGAACCTATTCAAGACCATCCATGCGTTGTTACTTGACAAGGCAAGAGGAGGTGATTCATAATTTCTCCTGATTGTCTGCACATAAAACAGCATCAAACCTGTGTAATCCTCCTCTTCCTCAGGTTATCATCAGGATGGCTCCCTAGCTGGTAACCACTTAGAAAACACACTGTTTAGGCTCCTGTGGTATTCATATCGAAAAATGCAGAAAAGCCACCTCCTCCCTCACTAACAGTTTCTGGTAATAAGCTTTATCTGAGAACGTCCCTTCTCTCCGTGTGCCCCACCTCCAAAGTGTGCAATACTTTCTGCTTGCAAAGTAGTTCCAATAGACTTTAAATTCCCCCATTTTTCAATCCTGTAAGTTCCTAATATATCTCAGATGCCATAGAACTACCTGTATCTTTTACCTTGTGTAAGGTTTAGCATTTATACATCATGGTGGAATGAATGAATTTGGGGATCTTGTCTTGAAGTTATTTTTTGAAGTTCTGCTGCCTCAGATTCTTTGCAGTTCTTGCCATTATGGTTCTTGGACATGGATTAATTTATCTTTTGGAAATGTGATTTTTTTTCTGAATGTACGTGGAAGTACTATAGGTCATGATATTTTCCATGTCAAAATAATAAAAGAATACTTTAAGAATATTAATCAAAGATTACTTCCTTAATATCACAGTAAGCGAAAATGGCTACCATATAGAGGGAGTAGTGTGCTTATGCATTTAAAGTTTAAGCCCATGGATTCTATCTCAAAGCTGTTACTGTCTTTAAGTAGCTTGGGTTGATTGCTCCTTTTATTCCGTTGGAAAAATCTTTGAGGTACTGCATTGTTCTTTTTAAGCAAGTTATGACCTTTATATGGGTGAAGGTTGTGGGAGGTGCTTTTCTAAAGTCTTCTCTGAGTCCCACTGGGCCAAAGCCAGTAGTACTTTTATGTGTTGGTTGATTGAGCTCGATCACCGATCAATCACTCACCTTTTCAAGTTATGGCCTGCACAGAATTTTAGAATTGGTTCTTATTTATAATAACTTTGTTTTGCTTTTCCTTTTATTGAAAATTTGTTGCTCAATTTCAAATGCCCATGTACTTAATCTAGGGGTTCTAGGGGTGGGCATAAAAATCGAAAAACTGGACCAAACCGAATCAGTTCGGTTCGGATTTGGTAAATTTTATTAAGACTTTGGTATTTCAGTTTGGTCCTTGGTATTACAGTCACAGTACTTCGGCTTTTTCGAAGTTTAATAATATCCATTCAAATTTCATACTTCAATTAAAACTATATCCAATGTGCATTCAGAATTTTTTCCCAGTTGGCCCAAAATCCCGTTCTTGCACAATGTAAATTTCAACCCCAAGTCCCAAGGCCTTAACCCATTCCCAAATCTGAATGCTACTGCTCATTTTATGTTGTTGCCGTGTGCTGTTCATTTTATGAGGCTTGAGCACTTGTTGAGACTGTCCAGTGCTACTACAGACTGTTTATTGCTGCTCATTTGTGTTGATTGTTTCATTGTTTCTGGCTGCTGCAAAGTGCTAGTCTACTATTATCATTAATGCATGAGCCTTTCTTTGGTCTTTGGGCAGTGGCTGCTGGCCTGCTGCTCGTTGCTTTCTTGGCAGTGGGTACTGGACAGTGGCTGTGCTGTAACTTCAAAGAATCATTGCTGAAATTTTCAATGTTGAAAACAATTGCTATTAAATTTTTTTTATCATACTTTAGTTGTTCCATTAAAAAAATACAGAAGAACCTAATTAAAAAGATCGAACTAAACTGAATCGAACTTTAATGAAAAAGAACCAAACCGGATTAGTTTGATACAATATTCTTCTGTACACTACTGGCAAACCAAAAATCGAAGAAAATGAATGCCCACCCTTAACATATTCTATGTCAAAGACCACTACTATTGATTTAACTTGTGATCCGTTCCATCTGTATTGCCTTTCTAATTATTATCTTTTGATGTCAATATAGTGTGCATAGTTTTTATTTCCTTCCCTATAAAAAATATTTTATAATGTTTTTGTTATATAATCTTCTGAGCCTACAAGTTGCACATATTGGCATCTTTTAATGTATATATTAGGTTTTGAGTTCTTTCAAGTGTAAGTACTTGCTAAATGTTAGTCTGAAAATAAATTATTTGCTGTGTTAGAAGATTACTGATTGTTGTTATTGGATATATGCCTACCACACATCCTACTTTATACTACCTTGCTGTAAAATTACCTTTATAACTGTGAGATGATAGGCAACAAAAAAATAGTTGATCAGGTGTTTCACTTTAGATTTTGGATAGCAATCCTCAATTGATCGAATCACGTTCTCAAGAATTATGCCTTCAGAGCTCCTTTCACACTGGTAGGTAGTTAGCATTTGCTGCACAGATTGATATCTCTTCTCAGCAAGTTCCATTTCAAACAGCCTTCATGGGCTACCACCAAGAATAACAAGCAAAGCCACCTTAGTTGGGGTTTAGTTTCTCGATCATCTCTGCACTCAATTCTATTCGTACTTTGAGAGATAGTGGGGAACTTATCACATGACTTGACTGAGAATCATTTTTTGATGATTGTTGAAGGCATTTTATTGAGCATCTAGCAACAAGAAAGTGCAGTAAAAGTTTTTATAGGAAGACACTTTAACAACAACAACAACGGTAGGATGTACGCAGATTGACCCCTACCTATGTGGGGTAGAGAGGTTGTTTCACATAGACCCTCAGCTCAAGAAAAAAGTTTTACAAAACAGGTTTGAGGAAAAAAAAGCCTGAGATGAAAATGTCCAAGAAAAGAAAAACACTTGAATAAGAGAATTCCATCTTTTTGCTCATACCATAGTACCATACCAGTGAATCTGGTTGCAGCATTTTATTGAGCATTTAGCAACAAAGTGCTGTAGAAGTCTTTATAGGAAGACACTTTAACAACAACAAGGGTAGGATGTACGCAGACTTACCTCTACCTTTGTGGGGTAGAGAGGTTGTTTCACATAGACCCTCGGCTCAAGAAAAAAGTTTTACAAAACAGGTTTGAGGAAAAAAAGCCTGAGATGAAAATATCTAAGAAAAGAAAAACACTTGAATAAGAGAATTCCATCCTTTTCCTCATACCGTACCAGTGAATCTGGTTGCACATGGAGAATCTACACTTCATCCATCTTCTTCGGCAGCACAGCAATGCTGTCTACTTACCGTTCTAACCTCAAACAAATTCCATGCCATTGGCAATAAATCAGGGAATTGCTCTTTAAGAGGACATCCTGCCAAAAGAATATTCTTTTTCCTTTCCTACTTTGAAACAAGACTTTTCAGAGAATTCATCCTCGTAGATTTCTTATAAATCTCCATTTTCCAACCTCATTGGAGCCATTACCTGTCGATTAAGCACCAAGACTCTGGAGCTTAGCTTGCTTGAATTACTTCCGACAAATCTCTTCTTCTCATGTATCTCCAAAATGATTGAATTGCATGTTTTTGTTGTGAAACCTCAAAATTTTGACCCCAAGTCCTTGTGTGATATAATTCAGTCTGATTAACAAGATCTGTTCTCCTTGTTGCCTTCCCAAAGGAAGTTTCTCTTAATCTGTCTTGCCCCTTTCCCCACTGTTGCTGGGATGGGAACTAGGACATCATACATGTGGGCAGGGACTCTAGAGCACCATTAGTAAGTGTTTGCCAACTAAGGATAGGTATTGCCTTTTCCTGTTTGAAAGATTTTCTCCACTTCCTCAATGACTTTCTATACCTTTGTTAGTTAATGCGTTGCACGCAAAGGCATTACTGGAGAAGAAGTGGGGAGACACCATAAGCTGAAGCCCAATATGTCTGTCATCTGCTGCAGCCCCAATCTGTATTGACCGGTCAAGGTTGGTACAGTTTCTAATATGACCTTAAGGGCCGAATCAAACAAAAACCGATAGAGTGCTCCTATTCCTGTTTGAAAAATTTTCTCTACTTCCTCAATGACTTTTCATACCTCTGTTAATTTATACGTTGCACCCAAAGGCATTCTCGGAGAAATATTGGGGATACACCATAAGCTGAAGCCCGATATGTCTGCCATCTGCTGGTTGGTAGTCTCTTATTCTTATATATGACCTTTTGAGCCGAATGGAACAAAAATCGATAGAGTGCATGGCCTGTGGCTACTCTATCCCATCATGTTCCTGGAAAAAGGCCATTAATGTTTGTGTATACTTTTCTAATGCCGTGGGACAGAGCTATTTAAAATTGGAATGGAGTATGGCTGATTAGTTGTCCTAGGCTGGGTACGTATACTATTTTCTGTGGCTACACTACTGCTCTTTATTTGTTGCTCACTCATCTGACTAGAAAAACTAATACATGTGTCATGTTTTCTTTTCTCGAACTATACTGCATGTTCTGGAGAAAGAGAATAAGGATACTTCCCATGAACAAGAATGCTTCACGCAACATGGCTGCGAGTTCATTGAACATTCTGTATTTGCTAACCATCACCATTCCTTAAAGATCTAGGGAAGTGTTAATACACATCAGTTTAGAAGGAGCAAAATAAATTCAAAGATTTGACTTGAATATTGTTTTCTATGTTGATAGCTACTGGAGCAAATAGAAGTTCTTTTTTCTTATCATTGTTTGTTTTTCTGACCTAAAAGGTTTTCGTAATTCTTCTTGTTGTTTGCATATTTGTTTCTCCCTCTCTTTTCTTTCCTTTCGTTGTTGCATATGATGTCCAATCATGGCTCATCTTAATCTACTGATTTTGTATTGATGCAGGGATTGGTGGCTAGGAGCATATTGGCAAGCAAGGGTGTTACATTAGGTGAAACTTTGGTGTAGAATTTGAATCATGAATTTTGCGTACTTCTATAGCTATATGAAGTTGAGGTGTTAAAGAATTGGATATCCTTTTGTAGGGCTAACTGGAGTTGCTTGTTTTGAAGGTCTAGAGATAGAAGTTTACAAGATTTTGTGCTTAAGGGTTTTTTGTTTTGGGTTTATGTCTTTAGGAGTTCCCCCTTTTTGTTTTCCTTGAGTGAGGTGTAAAATCAGATTGCGGCATATAGTCAGAAATGTATCGTGCATCTCTGGTGAGGCAACGATACATACAAAAACAACATAGACAGAAAGTTTTGCGTAAAATCTTTAGAGTTAAATGTTTTTTGCTGTAACGTTGCAGATTCTCGTCTGGTAATGTGTTTGTTCTGTAGTTTCCCTTAAATGGGATTTTCCTTTTTTTTCATTTGGATGTAAGGGAGGTTGTTGATTTAGTGTGATACATTTTAGGGATACCCATCTAGGGTCTCCTAATGAATAATTTACTGCATATTGATGCT</genome_strand>
        <mrna_strand>CCTTTGCAGTAGCTGGAAATGGGAACACCGGGGCTGGAAACTTTAGCAACACTGGAGTTTGGGGTTCATCTTCAATTTCCCCTCAAGGTAGAGGAAATGTTTCTAACCAAAGTGGAAATCTTGGTTATGGGGGTGATGATAGTTTATATGGGTTGACTGGAGGCTATGGAAGAAATGTTACATCAAGTGGGGCTCCTACCTCATCATATCCTGCATCTAATGGTAGCTATGATGGGCCTTTAGCTGATTTTTACAGTGGTGGTTTGGGATATAGTGATTCCACTTGGCGCTCTGCAAATTCTGAGCGAGATGGATCTGGTTCAATTGGTTATGGACTCGGCAATGCACCCTCAGACATGCCACCTAAAAATTCTGCTAGTTATGTTGGCAGTTATGGTGTTGGTAAAAGACAGTCAAACAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGGTGGCTAGGAGCATATTGGCAAGCAAGGGTGTTACATTAGGTGAAACTTTGGTGTAGAATTTGAATCATGAATTTTGCGTACTTCTATAGCTATATGAAGTTGAGGTGTTAAAGAATTGGATATCCTTTTGTAGGGCTAACTGGAGTTGCTTGTTTTGAAGGTCTAGAGATAGAAGTTTACAAGATTTTGTGCTTAAGGGTTTTTTGTTTTGGGTTTATGTCTTTAGGAGTTCCCCCTTTTTGTTTTCCTTGAGTGAGGTGTAAAATCAGATTGCGGCATATAGTCAGAAATGTATCGTGCATCTCTGGTGAGGCAACGATACATACAAAAACAACATAGACAGAAAGTTTTGCGTAAAATCTTTAGAGTTAAATGTTTTTTGCTGTAACGTTGCAGATTCTCGTCTGGTAATGTGTTTGTTCTGTAGTTTCCCTTAAATGGGATTTTCCTTTTTTTTCATTTGGATGTAAGGGAGGTTGTTGATTTAGTGTGATACATTTTAGGGATACCCATCTAGGGTCTCCTAATGAATAATTTACTGCATATTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330706" ref_strand="+" ref_description="SGN-U330706        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tcagctcaagaaaaaagttttacaaaacaggtttgaggaaaaaaaagcctgagatgaaaatgtccaagaaaagaaaaacacttgaataagagaattccatctttttgctcataccatagtaccataccagtgaatctggttgcagcattttattgagcatttagcaacaaagtgctgtagaagtctttataggaagacactttaacaacaacaagggtaggatgtacgcagacttacctctacctttgtggggtagagaggttgtttcacatagaccctcggctcaagaaaaaagttttacaaaacaggtttgaggaaaaaaagcctgagatgaaaatatctaagaaaagaaaaacacttgaataagagaattccatccttttcctcataccgtaccagtgaatctggttgcacatggagaatctacacttcatccatcttcttcggcagcacagcaatgctgtctacttaccgttctaacctcaaacaaattccatgccattggcaataaatcagggaattgctctttaagaggacatcctgccaaaagaatattctttttcctttcctactttgaaacaagacttttcagagaattcatcctcgtagatttcttataaatctccattttccaacctcattggagccattacctgtcgattaagcaccaagactctggagcttagcttgcttgaattactttccgacaaatctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="-" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="40046" stop="38732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39746" g_stop="39031" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="-" ref_id="SGN-U330706" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39746" e_stop="39031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTCAAGAAAAAAGTTTTACAAAACAGGTTTGAGGAAAAAAAAGCCTGAGATGAAAATGTCCAAGAAAAGAAAAACACTTGAATAAGAGAATTCCATCTTTTTGCTCATACCATAGTACCATACCAGTGAATCTGGTTGCAGCATTTTATTGAGCATTTAGCAACAAAGTGCTGTAGAAGTCTTTATAGGAAGACACTTTAACAACAACAAGGGTAGGATGTACGCAGACTTACCTCTACCTTTGTGGGGTAGAGAGGTTGTTTCACATAGACCCTCGGCTCAAGAAAAAAGTTTTACAAAACAGGTTTGAGGAAAAAAAGCCTGAGATGAAAATATCTAAGAAAAGAAAAACACTTGAATAAGAGAATTCCATCCTTTTCCTCATACCGTACCAGTGAATCTGGTTGCACATGGAGAATCTACACTTCATCCATCTTCTTCGGCAGCACAGCAATGCTGTCTACTTACCGTTCTAACCTCAAACAAATTCCATGCCATTGGCAATAAATCAGGGAATTGCTCTTTAAGAGGACATCCTGCCAAAAGAATATTCTTTTTCCTTTCCTACTTTGAAACAAGACTTTTCAGAGAATTCATCCTCGTAGATTTCTTATAAATCTCCATTTTCCAACCTCATTGGAGCCATTACCTGTCGATTAAGCACCAAGACTCTGGAGCTTAGCTTGCTTGAATTAC-TTCCGACAAATCTCTT</genome_strand>
        <mrna_strand>TCAGCTCAAGAAAAAAGTTTTACAAAACAGGTTTGAGGAAAAAAAAGCCTGAGATGAAAATGTCCAAGAAAAGAAAAACACTTGAATAAGAGAATTCCATCTTTTTGCTCATACCATAGTACCATACCAGTGAATCTGGTTGCAGCATTTTATTGAGCATTTAGCAACAAAGTGCTGTAGAAGTCTTTATAGGAAGACACTTTAACAACAACAAGGGTAGGATGTACGCAGACTTACCTCTACCTTTGTGGGGTAGAGAGGTTGTTTCACATAGACCCTCGGCTCAAGAAAAAAGTTTTACAAAACAGGTTTGAGGAAAAAAAGCCTGAGATGAAAATATCTAAGAAAAGAAAAACACTTGAATAAGAGAATTCCATCCTTTTCCTCATACCGTACCAGTGAATCTGGTTGCACATGGAGAATCTACACTTCATCCATCTTCTTCGGCAGCACAGCAATGCTGTCTACTTACCGTTCTAACCTCAAACAAATTCCATGCCATTGGCAATAAATCAGGGAATTGCTCTTTAAGAGGACATCCTGCCAAAAGAATATTCTTTTTCCTTTCCTACTTTGAAACAAGACTTTTCAGAGAATTCATCCTCGTAGATTTCTTATAAATCTCCATTTTCCAACCTCATTGGAGCCATTACCTGTCGATTAAGCACCAAGACTCTGGAGCTTAGCTTGCTTGAATTACTTTCCGACAAATCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320947" ref_strand="+" ref_description="SGN-U320947        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr3:2492279-2495756 FORWARD | Aliases: F17A17.15(evalue: 1e-34, score=143) genbank/nr: gi|30680456|ref|NP_850539.1| heterogeneous nuclear ribonucleoprotein (hnRNP), putative [Arabidopsis thaliana](evalue: 7e-33, score=143)">
      <seq>aatttctttgttttttcctttcttcttcactaccacatattctctcttcttaccaaaaaaaaaaaaaaagataaaaaagaattaatataaaatcaaaaagattaaatttttatataaaattaaaggcttagaaacaatcttttcttagctgaacaaattttgtattcaaaattgttacatatttgattggaaagattggaaagagaagagaaaagagtggggacaccaaagttggggggcagaatatagagaaggaagaacaacgcccttcgttctactattgccccctctttagatcttactgttttctcatctgggtattcttcaatcggttgattcttgatttgggaaaatgcaatctgatcttgggaagttattcattggtggaatttcatgggacacaaatgaagagcgtctgaaggagtattttagtacttatggggaggttttagaggctgtaattatgaaggataggactactggacgtgcccgtggttttggttttattgtctttgctgatcctgctgttgctgatagggtaatcaaggagaaacacaacattgatggcaggatggttgaagcaaaagaaggctgttcctagggatgaccagagcacaataagtagaagcagtcctagcattcagggttctcctggtccaggacgtacaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="-" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="49592" stop="47556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49292" g_stop="48946" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48945" i_stop="48482" i_length="464">
            <donor d_prob="0.041" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48481" g_stop="48256" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="574" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48255" i_stop="47954" i_length="302">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47953" g_stop="47856" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="673" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="-" ref_id="SGN-U320947" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49292" e_stop="48946"/>
          <exon e_start="48481" e_stop="48256"/>
          <exon e_start="47953" e_stop="47856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTTTGTTTTTTCCTTTCTTCTTCACTACCACATATTCTCTCTTCTTACCAAAAAAAAAAAAAA-GATAAAAAAGAATTAATATAAAATCAAAAAGATTAAATTTTTATATAAAATTAAAGGCTTAGAAACAATCTTTTCTTAGCTGAACAAATTTTGTATTCAAAATTGTTACATATTTGATTGGAAAGATTGGAAAGAGAAGAGAAAAGAGTGGGGACACCAAAGTTGGGGGGCAGAATATAGAGAAGGAAGAACAACGCCCTTCGTTCTACTATTGCCCCCTCTTTAGATCTTACTGTTTTCTCATCTGGGTATTCTTCAATCGGTTGATTCTTGATTTGGGTATTCATTTTTTTTTCTAATCAATTGTATTTGTTAGATGTTGTTTTGGGTTAATGAAAGCATTTTGATTGTTGGGTCGATGTTGGTTTTGCTTGTTTGTTGGGTTTTATATTTTGATTCTAAATTTTGATTGATCGTTTAAGGATCCGATGCATTTTGATTGAATCTGATAATGTTTGATTGGTTTTGGTACTTTATTCATTGTAAAGGTGTGTTCTTTAGTTTATTTTCAATCTGCATTCCATTTTATCTAGTGGGAATTGAAAGTGAATCTAGATGGGTGTGTTCTTGTTGGAAAGTTAGGTGGAGTTGTATGATTTACGTTTGATTGCATCAAGTTATGTTATTTTATGCTGTGCACATGAGAAATGGTAGTTTTTTTTTAGCTTTAAATTTGATATTATAGAATGATGATTGAGCACCTTGGAGACGAGGTTTTGAGGATTTTGATTTGTTGTTTGTAGGAAAATGCAATCTGATCTTGGGAAGTTATTCATTGGTGGAATTTCATGGGACACAAATGAAGAGCGTCTGAAGGAGTATTTTAGTACTTATGGGGAGGTTTTAGAGGCTGTAATTATGAAGGATAGGACTACTGGACGTGCCCGTGGTTTTGGTTTTATTGTCTTTGCTGATCCTGCTGTTGCTGATAGGGTAATCAAGGAGAAACACAACATTGATGGCAGGATGGTAAGCTGTTCTAGTTTGCAAATTGGTTCCTTTTGATTTGTTGAACAAGGAGCATATAAGGTTGTCGTTTGAACTTCTGATGAGATTATACTCTTGGATGACACCTAAAATCAATGGGAAATGTGGCACTGTAATGGAGAGTTAGCTTTATAAATCTATGTTTTTTTGGTACAAATGGTGTTCTACCCTGCACTAAACTGGCACATTGTTCCTATTCTTATGGCATATCACATCTGGAAGAGTGGTTATAATTAACTCTCAAATCTCTTCTTTTTACTCATCATGGTCTACTTATATTTCAGGTTGAAGC-AAAGAAGGCTGTTCCTAGGGATGACCAGAGCACAATAAGTAGAAGCAGTCCTAGCATTCAGGGTTCTCCTGGTCCAGGACGTACAAGAAA</genome_strand>
        <mrna_strand>AATTTCTTTGTTTTTTCCTTTCTTCTTCACTACCACATATTCTCTCTTCTTACCAAAAAAAAAAAAAAAGATAAAAAAGAATTAATATAAAATCAAAAAGATTAAATTTTTATATAAAATTAAAGGCTTAGAAACAATCTTTTCTTAGCTGAACAAATTTTGTATTCAAAATTGTTACATATTTGATTGGAAAGATTGGAAAGAGAAGAGAAAAGAGTGGGGACACCAAAGTTGGGGGGCAGAATATAGAGAAGGAAGAACAACGCCCTTCGTTCTACTATTGCCCCCTCTTTAGATCTTACTGTTTTCTCATCTGGGTATTCTTCAATCGGTTGATTCTTGATTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGCAATCTGATCTTGGGAAGTTATTCATTGGTGGAATTTCATGGGACACAAATGAAGAGCGTCTGAAGGAGTATTTTAGTACTTATGGGGAGGTTTTAGAGGCTGTAATTATGAAGGATAGGACTACTGGACGTGCCCGTGGTTTTGGTTTTATTGTCTTTGCTGATCCTGCTGTTGCTGATAGGGTAATCAAGGAGAAACACAACATTGATGGCAGGATG..............................................................................................................................................................................................................................................................................................................GTTGAAGCAAAAGAAGGCTGTTCCTAGGGATGACCAGAGCACAATAAGTAGAAGCAGTCCTAGCATTCAGGGTTCTCCTGGTCCAGGACGTACAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328463" ref_strand="+" ref_description="SGN-U328463        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | thymidylate kinase family protein, similar to thymidylate kinase GI:291900 | chr5:23988457-23990142 FORWARD | Aliases: F2O15.12, F2O15_12(evalue: 8e-84, score=307) genbank/nr: gi|21553651|gb|AAM62744.1| thymidylate kinase-like protein [Arabidopsis thaliana](evalue: 6e-82, score=307)">
      <seq>gaaccctacaaggcgccaaataaaaaaatggtacttttcaaaagaggcgcggaaaataggtttttaggtactcagtgatatgagcaatttcgcactcaccacaacactcagaagttttgtaccaaagacaatttcgacctttcctagaaaatttggaacttgggcagctttattttcattgaagtctagcttggatttgaagttacgttttaagccttcgagacttattcatatggagaacaaagagagcagcagctccagaggtgctttaattgttttagaagggttggatcgctgtgggaagacatcgcaatctggcagactgtacaagtatttggatgagcagggacattcagttgagtcgtggagatttcctgacagaaatacaggcgttgggcaaatgatttcttcttatcttgcaaacaaatcacagttggatgaccatgcaatccatcttctcttcagtgcaaatcgttgggaaaagagatcattaatggaggagaagctgaagagtggaacgactctcatcgttgaccgctattcttattctggggtggcattttcctctgccaagggacttgatattgaatggtgtaaggctccagaaatagggttgttagctccagatctggttgtatatctcgacatatctccagagaaagctgctgaaagaggaggttatggagatgaaagatatgagcagcttgagtttcagaaaaaggttgctggatcttatttgtctcttcgtgattcctcgtggaaggttatcgatgcaaccctttcgattgaagatgtagagaagaagctcagagaagttgtacttgactgtatgattacgtgccacaaaagggaaaccattgtctcagttatggccatgttaggtctagtgaatgtctgcatgaatgatatgtataccttctttattacacggnattggttttaatggattttgctatatttaatcttctaaacgatatccttggaaagtgtggagtggttcatgttttaaaaaaaaaaaaaaaaaaaaaaacccggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="+" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="53932" stop="58831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54232" g_stop="54339" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54340" i_stop="55000" i_length="661">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55001" g_stop="55378" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="486" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55379" i_stop="57293" i_length="1915">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57294" g_stop="57405" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="598" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57406" i_stop="57482" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57483" g_stop="57542" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="658" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57543" i_stop="57838" i_length="296">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57839" g_stop="57943" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="763" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57944" i_stop="58286" i_length="343">
            <donor d_prob="0.755" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58287" g_stop="58522" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="1002" r_length="239" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1008" polyA_stop="1031"/>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="+" ref_id="SGN-U328463" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>999</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54232" e_stop="54339"/>
          <exon e_start="55001" e_stop="55378"/>
          <exon e_start="57294" e_stop="57405"/>
          <exon e_start="57483" e_stop="57542"/>
          <exon e_start="57839" e_stop="57943"/>
          <exon e_start="58287" e_stop="58522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCCTACAAGGCGCCAAATAAAAAAATGGTACTTTTCAAAAGAGGCGCGGAAAATAGGTTTTTAGGTACTCAGTGATATGAGCAATTTCGCACTCACCACAACACTGTAAGTTTCCCTTCACTGAAATTTGTGTATCTGATTTTGTTCGATTACAAAGAAATAGTGAATCTCTTTATAGAAAATGAAAATTTGTTTGATTTATTGATAAATTTATTATTGTACTCTGTGTATTATACATATTTGCCAAGTTTATGCAGAATTTCTTAGTATCAAAACTCAAAAACTATACATAGGTTTTGATTTCTCTTGATATGGGTGTTCAGGGGCAGATCCAGGGGAGGGAGGGTGTTTAGCTGAATTCCACGATGAAAAATTATATTGTGAGTATAAGGTTAATTTTTTTTTTATTTTTAGGTAGGTATATATGTTTTGAATCCCTTGAATAGGTTGAGTTAGTGGTTTAAGGGTTCAAAATTCACTCTGGGGTTTCCAAGTTTTAATTTTTATAACCGTGATGTAAATATTTATGTGCATATTATGCTTGATAAAATGCCAATGAGAGGATGATCAATAGGATATGAGTCTTTTCTGTGAGGTGCATAAAATGAGTATATTTTTAGAGTTTAGTTTGGTGAGAATATGTTAGATGGGGATTAACTTGTAAAGTTTGTTCTATATGTCATGTAGATCTACTTTATTGAATTGTGTTCTGTGTTAAATATTTTAGTCGAAGGACTTTAAAAGTGGAGGGAACTTTGTTTTCCAGCAGAAGTTTTGTACCAAAGACAATTTCGACCTTTCCTAGAAAATTTGGAACTTGGGCAGCTTTATTTTCATTGAAGTCTAGCTTGGATTTGAAGTTACGTTTTAAGCCTTCGAGACTTATTCATATGGAGAACAAAGAGAGCAGCAGCTCCAGAGGTGCTTTAATTGTTTTAGAAGGGTTGGATCGCTGTGGGAAGACATCGCAATCTGGCAGACTGTACAAGTATTTGGATGAGCAGGGACATTCAGTTGAGTCGTGGAGATTTCCTGACAGAAATACAGGCGTTGGGCAAATGATTTCTTCTTATCTTGCAAACAAATCACAGTTGGATGACCATGCAATCCATCTTCTCTTCAGTGCAAATCGTTGGGAAAAGAGGTTTGTTCAATTCACACAGTCTTACTTGCATTGCCCATATGTAGTGTGTAATTATGATGCTCAGTGTGTCTGATCAGAATTCTGTACTTGGTCATGTCTCCTGTCAACAGGGGAAGACCCACAACCCTCGTAGGTCCATGTGGGTGCTCGAGCACCTACTGCTGTCGATCCTGACTATATATATATACATATAGATAGCTGTTACTGAATAACAAAAAAGAGATCAGTGAGCACCCTGGAAAATAAAATCTCAGTGGATGCTTTGGTTTTATGGTGGATCAAAGAGTTGTAAAATCCTACTGGGCCTATGATCAATTCTCGTCTCAACCATATTTTCCTCATCTAGCTGATGCTTATTTTTACCTTTCTTGTTTGTGTATGTGCTTTCCTATATTTTTTACTTTCCCCGACAAAGTGCTCTTTTTTCCTTTCTCTCTAAATTGCAACTTCCCAAAACTGAAGAACTTCATCTTCTCAACGGCAAAAAGGGGAACTCCTTTTGTCTTTTTTGTTGCAGCTCTTTCTTTCATGAAGGAGATTTAACCCTTTTGTTAGGTTCTACAGATTGTTTAATTTCCCTAAGTAATCCCCCCTTCTGTTTTCTTGAATGGCTTCTGATACTAAAAGCTCAATCAAATATAGTATAAAGAATAAACTCCCCGTTGTAGAAATTTTACTCACAAATTTTGTGAATAAATTAAACTAGTCAATTTATGTTCAGTCTGGGATAGTCTACTGCACAGAAATTTTACTTTGGAAATAAATTTAGAGTGAGCCATGCTGCTATTATTCATAGTTGGCCAAGAATGATTGAGTATATAGAATGATATTTTTTTTTTTAATAATGGAGTATTAACTATAATTTACATGGTAAATAATTTTTACCATCAAGTTTCAAATAGTTCTACACTTAAATTTGATGATTTTAATGATGCAGTTGAGCAACCATGATTTTGCCATCTACCATCACCTGTAAAAAATCCTTAGGCATGAGATCTGTCACTATCCTTTCCATATTTTAGGTATATGTGGAGATGAAATTGGTTAGCTTATTAATCAAATCAATCAAATGGTTAGCCAGTAGTCACATATCCTCCAAATTGATATGTTGGCTATCCATCTGAACTGATGGTTTGAATGCTGGGCCTTTTTTAAATTAAAAAATGAACGCTGGGACTTTCTTTTAGTAACTGAGGAATCCCTGATATGTTGCTTGTGAGCCGCCAACTACCCGTCTTGTAACAGAGGGCTAGTGGCACGCAGTATTTTCTCTTCCGCTACTTTCAAATTGATAAATAAGACTTTGCCTTTGTGGACCAGAAAATGAAAATAACCTTGTATAATGGATGTAAAAAGAATTAAGTGGTATAGACTTCCTACTTTTACCAGGTTGAAGAATTCTTGAACAGTTGTCTGCCTATGATTGTCATTTGCCTGGAATATATGAAGACCATTTAGCTCGTCAATCTGAATAGCAGAAAGCTTAAAAAATTGTGGTCTTCAATTTAGAGCAGTGTCTTATAAAAGAAGTTTAAAGAGCTTGTTAGGCTGTGCAAATGCTTTTTCTCCCCCCTCAGTTAATTCAACATTTGTCTTTCAGGTATCATGCTTGAAAGTTCTCACTAAAATGAATAGTCAAATGTTTATATGCATGCTTTTCTAATTTTCTATTTCCTTTGTAGTTTGTTCTCAAGCATAGGCAATGATGAAAATAGAAAAGTTTTTGGCAATAGTTGAATTCCCACTTTTAAATACCATTGTTATTTAACTGAAAAGTTTTACTTACATTTTTTCATTCGAGGTCGAATAGTATATCTGAAAATATTCAGTGAGTTGACTCATGATCATTGTAGAATTTAACATGTATTTAGCCTGGTGTACCTGCAAATTATTAATTTCTGTTGAAAAACTACAGATCATTAATGGAGGAGAAGCTGAAGAGTGGAACGACTCTCATCGTTGACCGCTATTCTTATTCTGGGGTGGCATTTTCCTCTGCCAAGGGACTTGATATTGAATGGTGTAAGGTAAAATCATGTCTTACTTCACTGATGTTGCAATTTCAAAATCTCCTAGCAAGTTTAACACTGATCTTTTACTGTAGGCTCCAGAAATAGGGTTGTTAGCTCCAGATCTGGTTGTATATCTCGACATATCTCCAGAGGTAGTTTTCTTTGTTCTTTTCACCTGTCTTAAGTTAAGAGAGATATTTCAATGCAATTTTCTAATTTGAAGCCTGTATTTGGTATATATGTCGATTTCTTGAGCAATCTACTCTGTTATTGAGGATGAGCTGTTCCTTTTTTACCTGTCTTTCCATATTATGCAGGTTTAAAACCAGTCTTACCTTGAATTTATTCTCCTATTGCTTGTCTTGTTGACTAATCCGTTTCAGCTATATTTTTGAATTTGGAAGATTATCATGACTGTTTATTAATGATTCAATTCTATGATAACTAGAAAGCTGCTGAAAGAGGAGGTTATGGAGATGAAAGATATGAGCAGCTTGAGTTTCAGAAAAAGGTTGCTGGATCTTATTTGTCTCTTCGTGATTCCTCGTGGAAGGTGACTTGTTCTCCATTTGTCGACGGAAATAGAAATGTCTGTTTAAGTAAATATAGCAACTAGTCTGATAACCTACTAGTTGTAGAATATTGTCATTTGGTTTTTGACTCAGCAGTACTTTCCGAGTTAGTTGGGATGTTTTTGATATTTAATTAGCATGTCTATGGTGACTAAACAGAAACATAATCTGACATTGACGAAACACTAGTGATCAAATTCTGATTTGATCTTTATACACAAATTCACTTTTTCCATGAACAAATAACAGGCTGATCAGTTTTTCTTATCCAAAGCCTTGGTGATAGCTTTGCCTTGTTGATGTTGTTTCCTTGATTTATTGCAGGTTATCGATGCAACCCTTTCGATTGAAGATGTAGAGAAGAAGCTCAGAGAAGTTGTACTTGACTGTATGATTACGTGCCAC-AAAGGGAAACCATTGTCTCAGTTATGGCCATGTTAGGTCTAGTGAATGTCTGCATGAATGATATGTATACCTTCTTTATTACACTGTATT-GTTTTAATGTATTTTGCTATATTTAATCTTCTAAACGATATCCTTGG-AAGTGTGGAGTGTTTCAT</genome_strand>
        <mrna_strand>GAACCCTACAAGGCGCCAAATAAAAAAATGGTACTTTTCAAAAGAGGCGCGGAAAATAGGTTTTTAGGTACTCAGTGATATGAGCAATTTCGCACTCACCACAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGTTTTGTACCAAAGACAATTTCGACCTTTCCTAGAAAATTTGGAACTTGGGCAGCTTTATTTTCATTGAAGTCTAGCTTGGATTTGAAGTTACGTTTTAAGCCTTCGAGACTTATTCATATGGAGAACAAAGAGAGCAGCAGCTCCAGAGGTGCTTTAATTGTTTTAGAAGGGTTGGATCGCTGTGGGAAGACATCGCAATCTGGCAGACTGTACAAGTATTTGGATGAGCAGGGACATTCAGTTGAGTCGTGGAGATTTCCTGACAGAAATACAGGCGTTGGGCAAATGATTTCTTCTTATCTTGCAAACAAATCACAGTTGGATGACCATGCAATCCATCTTCTCTTCAGTGCAAATCGTTGGGAAAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTAATGGAGGAGAAGCTGAAGAGTGGAACGACTCTCATCGTTGACCGCTATTCTTATTCTGGGGTGGCATTTTCCTCTGCCAAGGGACTTGATATTGAATGGTGTAAG.............................................................................GCTCCAGAAATAGGGTTGTTAGCTCCAGATCTGGTTGTATATCTCGACATATCTCCAGAG........................................................................................................................................................................................................................................................................................................AAAGCTGCTGAAAGAGGAGGTTATGGAGATGAAAGATATGAGCAGCTTGAGTTTCAGAAAAAGGTTGCTGGATCTTATTTGTCTCTTCGTGATTCCTCGTGGAAG.......................................................................................................................................................................................................................................................................................................................................................GTTATCGATGCAACCCTTTCGATTGAAGATGTAGAGAAGAAGCTCAGAGAAGTTGTACTTGACTGTATGATTACGTGCCACAAAAGGGAAACCATTGTCTCAGTTATGGCCATGTTAGGTCTAGTGAATGTCTGCATGAATGATATGTATACCTTCTTTATTACACGGNATTGGTTTTAATGGATTTTGCTATATTTAATCTTCTAAACGATATCCTTGGAAAGTGTGGAGTGGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341250" ref_strand="+" ref_description="SGN-U341250        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | phototropic-responsive NPH3 family protein, contains NPH3 family domain, Pfam:PF03000 | chr5:19533517-19535676 FORWARD | Aliases: MIF21.2, MIF21_2(evalue: 2e-16, score=83.2) genbank/nr: gi|15238900|ref|NP_199624.1| hypothetical protein [Arabidopsis thaliana] gi|8777403|dbj|BAA96993.1| contains similarity to bZIP transcription factor~gene_id:MIF21.2 [Arabidopsis thaliana](evalue: 1e-14, score=83.2)">
      <seq>aaaacactaagcttcttgttaaaagattcagcaatgcaaaggtccgaattctcaaggaaggaatatgaatccacgagcttcagaatccaaaaccttgaagaagaattgatgtccttgaagaaaacgcttcaactgcagcacatatctaagcaaacagaaaccatctccaagaaagttgaaccagtttctgcaaattttcaaagcttgaaaccatatggactagagggaagaacgccaagcaataagagtgttggccaagtgactagttgcattggttctgtgaatttctcttcccaaaaacgatatgctaataggttacttaagattttccggaggatatctttgtttggcagaggaaaatcaagaaaaaagcaaggtggaaatggccttaggccaaagatattgaacttttaaactacaatgacattgctgatcaaggaccacaaaatatgagagtatattatttaccaaattttgatgtaagaaagttcatgtaaatagcaagggaatcaataagaacatgtcagtggacattgatattattataatgaatcataagctgttgtactttgtagaacatatgcaatagccaaactgtttttacaatgcctgcatttgcttagatataccacagaatgacatattttgctccacaaaaggagcctcttttccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="-" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="61137" stop="59865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60837" g_stop="60165" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="683"/>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="-" ref_id="SGN-U341250" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60837" e_stop="60165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACTAAGCTTCTTGTTAAAAGATTCAGCAATGCAAAGGTCCGAATTCTCAAGGAAGGAATATGAATCCACGAGCTTCAGAATCCAAAACCTTGAAGAAGAATTGATGTCCTTGAAGAAAACGCTTCAACTGCAGCACATATCTAAGCAAACAGAAACCATCTCCAAGAAAGTTGAACCAGTTTCTGCAAATTTTCAAAGCTTGAAACCATATGGACTAGAGGGAAGAACGCCAAGCAATAAGAGTGTTGGCCAAGTGACTAGTTGCATTGGTTCTGTGAATTTCTCTTCCCAAAAACGATATGCTAATAGGTTACTTAAGATTTTCCGGAGGATATCTTTGTTTGGCAGAGGAAAATCAAGAAAAAAGCAAGGTGGAAATGGCCTTAGGCCAAAGATATTGAACTTTTAAACTACAATGACATTGCTGATCAAGGACCACAAAATATGAGAGTATATTATTTACCAAATTTTGATGTAAGAAAGTTCATGTAAATAGCAAGGGAATCAATAAGAACATGTCAGTGGACATTGATATTATTATAATGAATCATAAGCTGTTGTACTTTGTAGAACATATGCAATAGCCAAACTGTTTTTACAATGCCTGCATTTGCTTAGATATACCACAGAATGACATATTTTGCTCCACAAAAGGAGCCTCTTTTCCA</genome_strand>
        <mrna_strand>AAAACACTAAGCTTCTTGTTAAAAGATTCAGCAATGCAAAGGTCCGAATTCTCAAGGAAGGAATATGAATCCACGAGCTTCAGAATCCAAAACCTTGAAGAAGAATTGATGTCCTTGAAGAAAACGCTTCAACTGCAGCACATATCTAAGCAAACAGAAACCATCTCCAAGAAAGTTGAACCAGTTTCTGCAAATTTTCAAAGCTTGAAACCATATGGACTAGAGGGAAGAACGCCAAGCAATAAGAGTGTTGGCCAAGTGACTAGTTGCATTGGTTCTGTGAATTTCTCTTCCCAAAAACGATATGCTAATAGGTTACTTAAGATTTTCCGGAGGATATCTTTGTTTGGCAGAGGAAAATCAAGAAAAAAGCAAGGTGGAAATGGCCTTAGGCCAAAGATATTGAACTTTTAAACTACAATGACATTGCTGATCAAGGACCACAAAATATGAGAGTATATTATTTACCAAATTTTGATGTAAGAAAGTTCATGTAAATAGCAAGGGAATCAATAAGAACATGTCAGTGGACATTGATATTATTATAATGAATCATAAGCTGTTGTACTTTGTAGAACATATGCAATAGCCAAACTGTTTTTACAATGCCTGCATTTGCTTAGATATACCACAGAATGACATATTTTGCTCCACAAAAGGAGCCTCTTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341210" ref_strand="+" ref_description="SGN-U341210        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | phototropic-responsive NPH3 family protein, contains NPH3 family domain, Pfam:PF03000 | chr5:19533517-19535676 FORWARD | Aliases: MIF21.2, MIF21_2(evalue: 1e-81, score=300) genbank/nr: gi|15238900|ref|NP_199624.1| hypothetical protein [Arabidopsis thaliana] gi|8777403|dbj|BAA96993.1| contains similarity to bZIP transcription factor~gene_id:MIF21.2 [Arabidopsis thaliana](evalue: 9e-80, score=300)">
      <seq>acattaactccatctctcattaaaaacttccttacaaccacaagtcttattattggctgaatgcatgggtacttcttcaagtccaaaagactcttcaattctttatagtccactttcatctcctaatgttggtgctttgcttaaaatcaagatcatttcatggagtcaagaaactggtttacctgtcacaattcgagttcggatagctgacagaacctttaacttgcataagcaccccttgttctcgaaaagcggatacttcagaagacaactgaatgaatcaaatgaggctgaattaccaagtaacttccctggaggagcagagactttcgaaatgatggcactcttcatctatggatcctccacgttagttgaccctttcaatgttgcagcgctaagatgtgcagcagagtaccttgaaatgacagaagagtacatctctggcaatctttgtgagcgtttcgacatatatttgaaccaggttgtgctgcaaagctgggatgatactctgatagtactccaaaaatgccaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="-" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="63560" stop="61854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63260" g_stop="63099" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63098" i_stop="62632" i_length="467">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62631" g_stop="62562" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="232" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62561" i_stop="62457" i_length="105">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62456" g_stop="62154" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="535" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="-" ref_id="SGN-U341210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63260" e_stop="63099"/>
          <exon e_start="62631" e_stop="62562"/>
          <exon e_start="62456" e_stop="62154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTAACTCCATCTCTCATTAAAAACTTCCTTACAACCACAAGTCTTATTATTGGCTGAATGCATGGGTACTTCTTCAAGTCCAAAAGACTCTTCAATTCTTTATAGTCCACTTTCATCTCCTAATGTTGGTGCTTTGCTTAAAATCAAGATCATTTCATGGTAACAACTATGTTTAATTCCACATTTCAACTTTTTAGTTATGTTTTTTTTGTGTGTATTGTTTTGACTTTAACTTATCAAGAAATCCTACTTCACGAGTAAAATTCACTAATTTCCCACTAAAAACTGTTCAATAACTATTTCCGCAGATATTTTGATTGAACTTATGAGAAAAGAAAAAATTAGAAAGTTTCCCACTATTTCACTATGAATCTCTTTCCACCATGTATTTCCTAATGAGTTGGTTCGGTGGAAAATGTTATGGGAAAATCGTCTTTAATAGCACAAATTTCCCACTGATTCACGGTGGGAAAAAACTTTATTTCTAGTAGTGCATGTTTGATATGCTTTACTTATCAGAAACAGTTATCTCTACCCTTATACGATAAGGGTAATACACTCTGTCCTCCCCAGTTTGAGATTCCACTAGCTATGTTGTTTAAACTTATCAAGAAATGTTCTTTCAGGAGTCAAGAAACTGGTTTACCTGTCACAATTCGAGTTCGGATAGCTGACAGAACCTTTAACTTGCATAAGGTGAGATCTCCCAACTCAACTAGCATGGAGCTCTACAGTTGAGCACCATTTTTCAATATTATGATATTTTCAATTAGCTCACTTACTTGGTTTTTGATGTTGCAGCACCCCTTGTTCTCGAAAAGCGGATACTTCAGAAGACAACTGAATGAATCAAATGAGGCTGAATTACCAAGTAACTTCCCTGGAGGAGCAGAGACTTTCGAAATGATGGCACTCTTCATCTATGGATCCTCCACGTTAGTTGACCCTTTCAATGTTGCAGCGCTAAGATGTGCAGCAGAGTACCTTGAAATGACAGAAGAGTACATCTCTGGCAATCTTTGTGAGCGTTTCGACATATATTTGAACCAGGTTGTGCTGCAAAGCTGGGATGATACTCTGATAGTACTCCAAAAATGCCAAATG</genome_strand>
        <mrna_strand>ACATTAACTCCATCTCTCATTAAAAACTTCCTTACAACCACAAGTCTTATTATTGGCTGAATGCATGGGTACTTCTTCAAGTCCAAAAGACTCTTCAATTCTTTATAGTCCACTTTCATCTCCTAATGTTGGTGCTTTGCTTAAAATCAAGATCATTTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCAAGAAACTGGTTTACCTGTCACAATTCGAGTTCGGATAGCTGACAGAACCTTTAACTTGCATAAG.........................................................................................................CACCCCTTGTTCTCGAAAAGCGGATACTTCAGAAGACAACTGAATGAATCAAATGAGGCTGAATTACCAAGTAACTTCCCTGGAGGAGCAGAGACTTTCGAAATGATGGCACTCTTCATCTATGGATCCTCCACGTTAGTTGACCCTTTCAATGTTGCAGCGCTAAGATGTGCAGCAGAGTACCTTGAAATGACAGAAGAGTACATCTCTGGCAATCTTTGTGAGCGTTTCGACATATATTTGAACCAGGTTGTGCTGCAAAGCTGGGATGATACTCTGATAGTACTCCAAAAATGCCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346256" ref_strand="+" ref_description="SGN-U346256        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | DGCR14-related, similar to DGCR14 protein (DiGeorge syndrome critical region 14) (ES2 protein) (Swiss-Prot:Q96DF8) (Homo sapiens) | chr3:2487375-2489226 FORWARD | Aliases: MLP3.24(evalue: 8e-59, score=223) genbank/nr: gi|15231871|ref|NP_187436.1| expressed protein [Arabidopsis thaliana] gi|6466961|gb|AAF13096.1| hypothetical protein [Arabidopsis thaliana] gi|6648191|gb|AAF21189.1| hypothetical protein [Arabidopsis thaliana](evalue: 6e-57, score=223)">
      <seq>gcgccacctatcaacgccgtctccttcgccgtcattggccgagcaaaaccctaattcaaccctccacaacagtaattcttctaaagcaccaaccaataagcgccgatcgaaagtactcgatgaggacacctacgtggctgcaatagagaaaataatcgagcgtgatttcttcccagatatccccaagcttcgcgatcgtcttgattggcttgaagcgattcgtacaggcgatccggttcaaattcgtgatgctcagttgaaaattattgaacgaaggggaggtagagctgttggatcgaatactgaaggtaaattacgaacccctggttcgactttctttcggaattcgactactccgtttgaagatccttataaaactcccactcctagtgtagttaatggttataattggtctagtgttggggatactgcggaaggtggtggtggtgaagtggatgggtctttgagtttagatgagttttttaggaggtatacgagtgaggataatgagagtttttcaaagcttattgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="-" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="74478" stop="73346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74178" g_stop="73646" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="-" ref_id="SGN-U346256" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74178" e_stop="73646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCACCTATCAACGCCGTCTCCTTCGCCGTCATTGGCCGAGCAAAACCCTAATTCAACCCTCCACAACAGTAATTCTTCTAAAGCACCAACCAATAAGCGCCGATCGAAAGTACTCGATGAGGACACCTACGTGGCTGCAATAGAGAAAATAATCGAGCGTGATTTCTTCCCAGATATCCCCAAGCTTCGCGATCGTCTTGATTGGCTTGAAGCGATTCGTACAGGCGATCCGGTTCAAATTCGTGATGCTCAGTTGAAAATTATTGAACGAAGGGGAGGTAGAGCTGTTGGATCGAATACTGAAGGTAAATTACGAACCCCTGGTTCGACTTTCTTTCGGAATTCGACTACTCCGTTTGAAGATCCTTATAAAACTCCCACTCCTAGTGTAGTTAATGGTTATAATTGGTCTAGTGTTGGGGATACTGCGGAAGGTGGTGGTGGTGAGGTGGATGGGTCTTTGAGTTTAGATGAGTTTTTTAGGAGGTATACGAGTGAGGATAATGAGAGTTTTTCAAAGCTTATTGAGA</genome_strand>
        <mrna_strand>GCGCCACCTATCAACGCCGTCTCCTTCGCCGTCATTGGCCGAGCAAAACCCTAATTCAACCCTCCACAACAGTAATTCTTCTAAAGCACCAACCAATAAGCGCCGATCGAAAGTACTCGATGAGGACACCTACGTGGCTGCAATAGAGAAAATAATCGAGCGTGATTTCTTCCCAGATATCCCCAAGCTTCGCGATCGTCTTGATTGGCTTGAAGCGATTCGTACAGGCGATCCGGTTCAAATTCGTGATGCTCAGTTGAAAATTATTGAACGAAGGGGAGGTAGAGCTGTTGGATCGAATACTGAAGGTAAATTACGAACCCCTGGTTCGACTTTCTTTCGGAATTCGACTACTCCGTTTGAAGATCCTTATAAAACTCCCACTCCTAGTGTAGTTAATGGTTATAATTGGTCTAGTGTTGGGGATACTGCGGAAGGTGGTGGTGGTGAAGTGGATGGGTCTTTGAGTTTAGATGAGTTTTTTAGGAGGTATACGAGTGAGGATAATGAGAGTTTTTCAAAGCTTATTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320428" ref_strand="+" ref_description="SGN-U320428        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | WD-40 repeat family protein / St12p protein, putative, contains 4 WD-40 repeats (PF0400); similar to St12p protein GI:166878 (Arabidopsis thaliana) | chr5:20594096-20596137 FORWARD | Aliases: MFB16.9(evalue: 6e-83, score=305) genbank/nr: nucleotide(evalue: 5e-81, score=305)">
      <seq>ggactgaagcaaacaaaagcctctggtgcgcatctcaatttctcgatacgctgagatcacagttaccgaagatggctgaatttgccaattccaaaaactacggagtcccaatttacggtgccggttgggttccaccgagcgctctcagatctgccgttgaaccgtcggtcgatgatgaaaaggacgacggagacaaatcatcgtcatcggcaccgggaaactatgttgttcttgccggaggtggtggggaagggaatagcggtattcgtaatgctctcattgttgctcaattcgattttgattctaatgtgctctctgatgaacccgtggctaggttaggaactggcggtgatctgccttataggatggcagtacatccaggtggagaaggtcttatatgctcattgccaaaaagctgcagatggtttgactgggattttcagacagatgaaaatcgttcattgggtctgcgatcatctgagaaagtacttgagccattggaagatgttggacaacaactagcactaacttttaacgatgaaggttctttacttgctgtcggtggtgaggatggcaagttgagggtttttaagtggcctaggatggaaaatattcttgatcaggctaatgctcatgcttctgtgaaggatctagacttcagcccggatggaaaatttcttgcatctgttggaagcggcccttgccggatttgggatgtctcaaaatcaacctctgtagcttctttgacgaaggaaaatgatgagatttttggctattgtagattcgcaccaattaacgatgagaatcaggttctgtacatcaccacaatgcgagatcaagggggaagtatttcgaagtggagtactactacgtggaggaggataaaatcaaagcgtgttgttcgtgatcctatttgtgccttcaatatttcaaccaatggaaagcttctggcaataggaacaattgagggagatgttctgatagtgtcttccaacaattttcaagtgcaaaatgtggtaaaaaaggctcatcttggtcttgtaacaacattgaagttctcagaagattcgagggctttgctttctgcctccttggattcaagagtgagagtgacaattataaaggaagagaagaaaagtggtctgagcttgtggatcgtcatacttgttcttttgattgcaattgctgtatattatgcagcaagcaacggcattcttccattggagctaaactctatattaaaatgacgagctttatccccaaagaatttttataggtgaaacagtatctgaaacatttttgaaggccatctctggaacagtaggcttgaattcgagattcgataagttaaaagacatctgatgtttttaatgtgcttaaactgttagacaacagagagttaatatacctactttgtcctccattgtacaaaacaagttgtgtaggtttatttctttcaatttgcaaaaaaaaaaaaaaaaaaaaaactcgagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="+" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="75796" stop="83984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76095" g_stop="76420" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76421" i_stop="77326" i_length="906">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77327" g_stop="77421" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="421" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77422" i_stop="77830" i_length="409">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77831" g_stop="77978" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="569" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77979" i_stop="79606" i_length="1628">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79607" g_stop="79698" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="661" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79699" i_stop="79793" i_length="95">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79794" g_stop="79890" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="758" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79891" i_stop="80252" i_length="362">
            <donor d_prob="0.089" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80253" g_stop="80328" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="834" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80329" i_stop="80430" i_length="102">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="80431" g_stop="80551" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="835" r_stop="955" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="80552" i_stop="82663" i_length="2112">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82664" g_stop="82780" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1072" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="82781" i_stop="82867" i_length="87">
            <donor d_prob="0.345" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="82868" g_stop="82935" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1073" r_stop="1140" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="82936" i_stop="83357" i_length="422">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="83358" g_stop="83684" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1141" r_stop="1467" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1468" polyA_stop="1488"/>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="+" ref_id="SGN-U320428" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1467</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76095" e_stop="76420"/>
          <exon e_start="77327" e_stop="77421"/>
          <exon e_start="77831" e_stop="77978"/>
          <exon e_start="79607" e_stop="79698"/>
          <exon e_start="79794" e_stop="79890"/>
          <exon e_start="80253" e_stop="80328"/>
          <exon e_start="80431" e_stop="80551"/>
          <exon e_start="82664" e_stop="82780"/>
          <exon e_start="82868" e_stop="82935"/>
          <exon e_start="83358" e_stop="83684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTGAAGCAAACAAAAGCCTCTGGTGCGCATCTCAATTTCTCGATACGCTGAGATCACAGTTACCGAAGATGGCTGAATTTGCCAATTCCAAAAACTACGGAGTCCCAATTTACGGTGCCGGTTGGGTTCCACCGAGCGCTCTCAGATCTGCCGTTGAACCGTCGGTCGATGATGAAAAGGACGACGGAGACAAATCATCGTCATCGGCACCGGGAAACTATGTTGTTCTTGCCGGAGGTGGTGGGGAAGGGAATAGCGGTATTCGTAATGCTCTCATTGTTGCTCAATTCGATTTTGATTCTAATGTGCTCTCTGATGAACCCGTAAGTCAGATATTTTCATTCTCATGATTCGATGTAAAGTGCTTTTATGCAAATTGAATTGCTCTGTAGATTATTGTTTGTGCCTATGTTCATTATAGATTCGTGTTCTGTATGATCTTTAAGAAGTTGAGGTCTATGAAATATGTATTACCATCAATGGTTTTCTTGAACTCTTAAACATGCATCATTATGTAGCTTAATGAGCTATTCCTTTGTTTGTATTTGTCTTATGATACGATTTCTGTTTTGAAACATTTGAATATGTTCGGAACTATTCTATTTCTGTTTGGTTTCCACAAGAATCACAACTTTCAAGAATGTGAAGCAATTATTCTTTTGAATTTTATACTTTGGTTTGATGATCTTCTATTCGAACTAACTATCAATCATTAACTTACTATTTTCTTCATGAGTTGAAATGAATAACTTAAACTTTGTGCCAAGTCAAGCATTGTCGTACAAATTGAGTTGGAGGGTGTACATGATAAAACTATTTTGGGCATTAAAATAATCTTTTGTCTTGGGTTTATTAATGGTGAAGTCTTAATCCTGCTTGCTGAAGGATGAGAAGGGCTCGGATGGGTTGACCACAGACATCAGATTTGCTATTTTTCAGTGCAGTACGTTATCTTTGTCAGACCTGGTTGTTGTGATGCTTATATAATAACATTTTCAGACGTTCTAGCCCTAATAAAACTATTCTTTTTACAAGAGCCATTGCTAAAACTATCTAGTACATCCAAAAGCAACAAATATCAGTGAGCTTTATGAATGATCAAATAACTTTATTTCCATTGCCATGTATGCTCTTCACTTTTGTTTTCCTTGAAACATTAGAAGAGCATGGGAGATTATATTTGTCGCCTCCTTGGATCAGTTTGACTAGAACTATGTGTTTTGTTGAAGGTGGCTAGGTTAGGAACTGGCGGTGATCTGCCTTATAGGATGGCAGTACATCCAGGTGGAGAAGGTCTTATATGCTCATTGCCAAAAAGCTGCAGGTAAAGTTTGTGCAATGGGATTTACTTTGAAGGCTTAGATTACTATTCATGCTGAGTAGCTCTTCATTCTTTTCACTCCTCGGCCCTCACTTTGTGACTTGTGAGTGGTGGCACGGGCTGAGGGGAGCGTAGAATTACAAAAGCATACTGTTGCTGATAGAACATTTAGGGGCTTATACAGTTAAGGACTAAAGTGATATCACTTGACATGAGGTCTACGACTTCTTGAAATTGTTCATTTTTATGATTTCTCCTCTTATCTTGTTAGTTGCTTTAGCAAACTTAAAGAAAACTTAGAAAATAAAACAAGGCCACAGTAGACCACTTGCAGTAATTTAGCTTGGAATTTTTGCCTCTCCTTTTGGCAAGTATTGTGGGTAAGCATCTAATCAATGTGTTACCCGTGTAGATGGTTTGACTGGGATTTTCAGACAGATGAAAATCGTTCATTGGGTCTGCGATCATCTGAGAAAGTACTTGAGCCATTGGAAGATGTTGGACAACAACTAGCACTAACTTTTAACGATGAAGGTTCTTTACTTGCTGTCGGTGGTGAGGTAGATATCTTTCCCTTAAACTATTTCAGGTTGAAATGAAAGTATGGTTGTTGCTTGCCATTGAAGGAAAAATGCTCAATGTGAAGGCACTACTGTTTTGTTCATTGTATATGAAATATTTACGTAGACCAGTTTCTGTAAGCTCTGGTTATTCTCATACTTTGGTAAAAGTTGGACAAAGTGTTTTTTTAAAAACATTACCATGAAAGTCGGTCTCTGTTTATTTTGCCCTCAAAAATATTCTTGTACCTATGGGTTAGATTGTCTTTAAAGGAAAAGGAGGAGGTAGTCTGAGTACAAATTATGGCACCACTAGTTTACATCACTAATTACCAAAAGAAACACTGGTGGTACGCATGTTCTCCCTGCATTAAACTGTAAAGGTTGCAGAAAGTGGCTTGATGTGAAAAGGTAGCAGAAAGTGCTCTTTAAATCTGGGTTGTTTTACTTCCTGAAACCTTGTTCTGCCCCACAAGTTATTATTTGATGTACAGGAGAAGGGAGTAAACTCAGGATTATAGCCTGATTCTTTGGCATCACTCTGTAAGCGATAAAAGGTTTCATCAGTCTTAGTAACAAATATCTTGAATGTTTGAAATCACGTTCTGGATCCCTCATTGTGTTTACCTTACCTTTAGAACCCATTTGGCTTTCTCCTTTACAGATTTTAATTCTTCATTGTAAGAAAGATGTCAGAAGAACTTAACTCTTTCAGAAATAATGAACTGCTGAAGGCAATTAGTAGCAAAGTAAAAGAAAAACTTTAAACAAGTCTTTTTTCATTTTAAGAATTTTCTTAGTATCGGTTCATAACACACAGTTTAAGGAGTTTTCCTTTGATGCTACTAATAAATAAATACCGAAAGAATAGATTTCTATCAGGAAATATTAATTTCTATGCTAGTCTTTTCCTACCATGCTCTCATTCTAAGCTTGCTACTTCTTTTCGACTTTTTTGGAGTTAATAGAGTCTTTTGGAACTGACAGAAGTTGTTAACCATTTTGTGAGTGTGACCAAGTTTATACATTATCCTCCATGACCATCTTCTTTTTTTTTTTTTCCCCAGTAATGTTTGCTAATGTGTGGATTGACATTAAAGATCAGTTTTTTCTGGCTGTAATGTGAGCCTGCAGAACAATGATGAACCTTATGCTCGGTGGTTTAGAGCAGTCTATGGCTGCCGTATATAAATGGTAAAGAGTAGGTTAACCAGGAATCAATCACTCTTTCAGCTACGCTGTGAAATACCAAATAGTTTGGGAGAATAATGAGTAAATTTTTAAAAAATAGAATTTACAAAGCAAATATACTATTCTATTTGTTCTGTTGCTCTATATAGTGAAAAAAAGGAAAAATGTTGTAATCTCTATGCTGAACTTTCGCAACTTGGCTTGGTGGTCTAATTTTAGGGAACACTATCATGCTGAACTGTCTGTCATCCCATCCCCGAAGATTCCTTATGCTTTGTCAACTTTGATTTGGAGAATAATTATTACATCTAGTTTCAGACTAAGACATGATTGATTTATTAGATCAGCTTCTGCTGATTTCTTGCTGTCCTTGTATAAAGATTGAAATATGGAATTTCAAATAAATATCTTGATTATTGAATTTTGGTGCAGTACAGGATGGCAAGTTGAGGGTTTTTAAGTGGCCTAGGATGGAAAATATTCTTGATCAGGCTAATGCTCATGCTTCTGTGAAGGATCTAGACTTCAGGTCCATAGCATTGCTCAATTTCAATTTAAGCACTTCAAGCAATATATTTTATGGTAGACAGATTTTGACTCAAATGTTTTCGGTTGTATATGCAGCCCGGATGGAAAATTTCTTGCATCTGTTGGAAGCGGCCCTTGCCGGATTTGGGATGTCTCAAAATCAACCTCTGTAGCTTCTTTGACGAAGGAAAATGTAAGAATATCTATGAATGACTTTTAGATGCTGGAAGAGGGTCTGTGTGTTGTGTTCCACTTTTTCCCTGTGAATGAAAAGAAATGATGTCAAATTTTCGATTTAATTGTCACTTGAGTGTTAAGACTACCCAAAAAGCAGTGGAGATTCATTTTTAAATGTTTTGTTTCTCCTGTCAATTAGCTTGATATAAACTGGTTCTCTCTTACACGTGGATTCTTATTTTTAATAAGATAAAGGGTAGTTACATCATACAGGTAGATTCTTAAATATTCCCAATTCAAGGACGTTGTGTGGGCATATATCCCGATCTTTCTCTTTGTTGCTTTAGTTATCTGACAAGAAGCATCTTTTGTACTCAGGATGAGATTTTTGGCTATTGTAGATTCGCACCAATTAACGATGAGAATCAGGTTCTGTACATCACCACAATGCGAGGTTGATATGCTACACTGAAAATTTGTCTGAATTACCTTATTTTAGATAGTGCTTCACTTGGCATGTATGAAGAATTAACCCTGTATTCTTGTATTTGCAAAGATCAAGGGGGAAGTATTTCGAAGTGGAGTACTACTACGTGGAGGAGGATAAAATCAAAGCGTGTTGTTCGTGATCCTATTTGTGCCTTCAATATTTCAACCAATGGAAAGCTTCTGGCAATGTAAGACTCTTTGTTGGTTTCTATTCCATGAATATCTATAAATATCATGTCATTGCACCACTGAACTCTCCATATAGCTGAATGTTCTTAAAGTTGGAAAGATTCATATAATGTGCTAAACTTAGTGCTTCCCTTCAAAAAGTGTGAGCACTTGCCAACTAAAGCAGCTTGTTTCCTTTTTTTAAAAAAAAATAAATTGATAATTTAAGAGGAGAAAAACAACTAGTTGACTTGTTCCAAAGGAGATGGTGGAGAGGTTGACACATAGGAGTAGCATACCTGGTGATTCCAGGTTCAAAGCTTAGTGATAATATAAGTGGCTGTAGGCATGTGTTAATAGTTTGTTGTAGTGTATTTTAGTAAATACAGTTTAATTACGGGAATTCACAATAAGGTGAAAATGAACCGAACTGATTAAAAAATAGATAATTTTTAGTTTTAGCTTGGTTTGATTTTAAAATTTTAAAATTGATACATATTTGGTTAAAGAATTGGTCTTTCTTTTCGTTGTTTAATCTCTCTTGGATCAGTCAATGTGTGATATTCGTAATTCTCATTAGTAATTACCGCCATAATGAAATCAAATATTGGCTACTCAATTTTTATTTCTTCAAGAAACGTAATGGTGTTAACCCTTCGGGTGGCCCAGTGGTTTGAGCTTGGGACTTCCATGTTGGAGGTTTCAAGTTCAAAACCCCTTGCCAGAGAAAGCAAGGGGCTTGCTTTCTGGGTCGAGCTCGTCGCACCAGGCTTGCCTAGTGCGGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCAGGGTTTTACCCTGTGCACACCCAAAAAGGGTAGTGGCTGTGGATTTTCCTTGTCGTCAAAAAAGAAACGTAATGGTGTTAGATGCTCTGCACTTCTTGTTGTAATGTGAAATTAATGAACTTCGTTCATAAATAAGGTTATTATTTTCATTAGGAAAAATATTAATATAGTGCAAGCTAAAACTACAAGAGCGAGCAACACTTTTTTGGTAAATAAAGATTTTATCATGAAATGTATTTATGTAAAGATTGAGAAAAAGCACCTGAGAGTTGGACAACGTACAAACAGCCCATTCACTTTTTGCTTAAAGACTTCAAGTTATCCACTTCTGCCCCAAAAAAGTTAAAAATCCAAGTTTGTATATTTATCCACATTTACCTAAAACTAGTCTCATCCTTACTTGTGAGCAAATAAAAAAAGTAAGTGACTAGTCTTTCAGATTACTACATAGAATTAAAACAAACAATTGATGTTTCCTTGTTTTTGACATCAAAATCAGATTAGAACATGTTAGCAAAAGAGCAAAAAATGACCTGCAGTAAGAAACCCAAGATATTACCACGTGTAAAAGGCTAAAAACTGACACACAACTGGAAGTTGTCATAATTTTAGATTCAGACAGCATGTCCTACAAGTAATTTTACTGCACAAGACAAAATAGGAAAATACATGTAAAACTGTATAGAGAAGTTACAGTAACATATATCTAGCAACCAATGAGAAGAAACAGTTCATTCTACATTACACAAATATCCTTCTAAATAGGACGACCACAAGTTCCTCGCGTCCAGCTTTTATAGTAGTAGTAATAATAATATGTGGGTCCACCTGCTAACCTCAGTGAACAGGTTTACTCGACCACCTGTGCTTGTGAGTTGTAAGGGACTGCCTGGACACCAACTCGAATAAAAAATAAGTTGCTGATTGACTTCTCATGGAACGTAATACAAGATGCTTTCTCTTATATGATTAAGCCTGTATCATTGAAGACACTCTGAAAGAAACCAAATCTCAGAGTAAGATGTCAGATTGTTAGCTTGTTGTTCAAGAGACATGATGTATTGTTCTGAGGGACTATTGAGTCAATTTCAGTTTCTCCAGCTAATATATTTAACAACAACTTACATTTAGGTTGTAAATTTTTCAAGGAATTTCCCATAAGTTCATATCATACATTATGATCCGCATGAAACTACCATCATCCTATTGACATCTTATAATGCTGAGTAGTAGAAGCAATAATGATGTTCCGTAGAATATGTTCTTGGGAACTTAATGGCTGTCTGTATTTCATTTTCCTTTGCAGAGGAACAATTGAGGGAGATGTTCTGATAGTGTCTTCCAACAATTTTCAAGTGCAAAATGTGGTAAAAAAGGCTCATCTTGGTCTTGTAACAACATTGAAGTTCTCAGAAGATTCGAGGTCCTAAAATGTTTTCATGCTCCTGTTAGTACCTGTAAAAGCCTGCAGTCAACACAACCAATTCTAATTTTTTCTTTCTTTCTTCAGGGCTTTGCTTTCTGCCTCCTTGGATTCAAGAGTGAGAGTGACAATTATAAAGGAAGAGAAGAAAAGTGGTGAGTATTTAATTACCATATCAATATTAGGAACATGATGGTAGAGAGTAGCTAGTTTATGTGTGGTAATTGTTAGCAGGTAGCCAGCCGAGTCGCGAAAATGAGCCTAACGTTAGTAGTTTGTAAGCTTCTGCTGTTAATCCTGATTAGTGTAGTTTTAACTCAATCATCATGATATTACTGATGACATGAACTAGTAGGAAACAACTGCAAGAAGTTTGTCTTTGTTAGCATTTCAATTGATTTAAGTTTGGTAAGTCATTAGTACCTGAATTAATCTGGATCATTTTCTCCAACTGGCTGATATTGATTGTACTGCAGACAGATCTCCTAGTCTAGCCATCAAGTGCTATTCTTTGTGCAAATGCATAATCGACTATTGTTATGGTAATTATGTCATTAAACATATCGTTTCATTGCAGGTCTGAGCTTGTGGATCGTCATACTTGTTCTTTTGATTGCAATTGCTGTATATTATGCAGCAAGCAACGGCATTCTTCCATTGGAGCTAAACTCTATATTAAAATGACGAGCTTTATCCCCAAAGAATTTTTATAGGTGAAACAGTATCTGAAACATTTTTGAAGGCCATCTCTGGAACAGTAGGCTTGAATTCGAGATTCGATAAGTTAAAAGACATCTGATGTTTTTAATGTGCTTAAACTGTTAGACAACAGAGAGTTAATATACCTACTTTGTCCTCCATTGTACAAAACAAGTTGTGTAGGTTTATTTCTTTCAATTTGCAA</genome_strand>
        <mrna_strand>GGACTGAAGCAAACAAAAGCCTCTGGTGCGCATCTCAATTTCTCGATACGCTGAGATCACAGTTACCGAAGATGGCTGAATTTGCCAATTCCAAAAACTACGGAGTCCCAATTTACGGTGCCGGTTGGGTTCCACCGAGCGCTCTCAGATCTGCCGTTGAACCGTCGGTCGATGATGAAAAGGACGACGGAGACAAATCATCGTCATCGGCACCGGGAAACTATGTTGTTCTTGCCGGAGGTGGTGGGGAAGGGAATAGCGGTATTCGTAATGCTCTCATTGTTGCTCAATTCGATTTTGATTCTAATGTGCTCTCTGATGAACCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTAGGTTAGGAACTGGCGGTGATCTGCCTTATAGGATGGCAGTACATCCAGGTGGAGAAGGTCTTATATGCTCATTGCCAAAAAGCTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTTGACTGGGATTTTCAGACAGATGAAAATCGTTCATTGGGTCTGCGATCATCTGAGAAAGTACTTGAGCCATTGGAAGATGTTGGACAACAACTAGCACTAACTTTTAACGATGAAGGTTCTTTACTTGCTGTCGGTGGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCAAGTTGAGGGTTTTTAAGTGGCCTAGGATGGAAAATATTCTTGATCAGGCTAATGCTCATGCTTCTGTGAAGGATCTAGACTTCAG...............................................................................................CCCGGATGGAAAATTTCTTGCATCTGTTGGAAGCGGCCCTTGCCGGATTTGGGATGTCTCAAAATCAACCTCTGTAGCTTCTTTGACGAAGGAAAAT..........................................................................................................................................................................................................................................................................................................................................................................GATGAGATTTTTGGCTATTGTAGATTCGCACCAATTAACGATGAGAATCAGGTTCTGTACATCACCACAATGCGAG......................................................................................................ATCAAGGGGGAAGTATTTCGAAGTGGAGTACTACTACGTGGAGGAGGATAAAATCAAAGCGTGTTGTTCGTGATCCTATTTGTGCCTTCAATATTTCAACCAATGGAAAGCTTCTGGCAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAACAATTGAGGGAGATGTTCTGATAGTGTCTTCCAACAATTTTCAAGTGCAAAATGTGGTAAAAAAGGCTCATCTTGGTCTTGTAACAACATTGAAGTTCTCAGAAGATTCGAG.......................................................................................GGCTTTGCTTTCTGCCTCCTTGGATTCAAGAGTGAGAGTGACAATTATAAAGGAAGAGAAGAAAAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAGCTTGTGGATCGTCATACTTGTTCTTTTGATTGCAATTGCTGTATATTATGCAGCAAGCAACGGCATTCTTCCATTGGAGCTAAACTCTATATTAAAATGACGAGCTTTATCCCCAAAGAATTTTTATAGGTGAAACAGTATCTGAAACATTTTTGAAGGCCATCTCTGGAACAGTAGGCTTGAATTCGAGATTCGATAAGTTAAAAGACATCTGATGTTTTTAATGTGCTTAAACTGTTAGACAACAGAGAGTTAATATACCTACTTTGTCCTCCATTGTACAAAACAAGTTGTGTAGGTTTATTTCTTTCAATTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U337113" ref_strand="+" ref_description="SGN-U337113        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | St12p protein (ST12p) / SEC12p protein, putative, 99.8% identical to St12p protein (GI:166878) {Arabidopsis thaliana} | chr2:211969-214464 REVERSE | Aliases: F2I9.9, F2I9_9(evalue: 2e-20, score=85.9) genbank/nr: St12p(evalue: 2e-18, score=85.9)">
      <seq>tcaatttctttatacgctgatttcacagttaccgaagatggctgaatttgggagtcttttaactacggagggccaatttacggtgccggttgggttccaccgagcgctctcagatctgccgttgaacctgcggtcgatgatgaaaaggacgacggagacaaatcatcgtcatcggcaccgggaaactatgttgttcttgcctgaggtggtggggaagggaatagcggtattcgtaatgctctcattgttgctcaattctattttgattctaatgtgctctctgatgaacccgtggcttggttatgaactggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="+" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="75829" stop="76722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76129" g_stop="76420" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="+" ref_id="SGN-U337113" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76129" e_stop="76420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTCTCGATACGCTGAGATCACAGTTACCGAAGATGGCTGAATTTGCCAATTCCAAAAACTACGGAGTCCCAATTTACGGTGCCGGTTGGGTTCCACCGAGCGCTCTCAGATCTGCCGTTGAACCGTCGGTCGATGATGAAAAGGACGACGGAGACAAATCATCGTCATCGGCACCGGGAAACTATGTTGTTCTTGCCGGAGGTGGTGGGGAAGGGAATAGCGGTATTCGTAATGCTCTCATTGTTGCTCAATTCGATTTTGATTCTAATGTGCTCTCTGATGAACCC</genome_strand>
        <mrna_strand>TCAATTTCTTTATACGCTGATTTCACAGTTACCGAAGATGGCTGAATTTG-GGAGTCTTTTAACTACGGAGGGCCAATTTACGGTGCCGGTTGGGTTCCACCGAGCGCTCTCAGATCTGCCGTTGAACCTGCGGTCGATGATGAAAAGGACGACGGAGACAAATCATCGTCATCGGCACCGGGAAACTATGTTGTTCTTGCCTGAGGTGGTGGGGAAGGGAATAGCGGTATTCGTAATGCTCTCATTGTTGCTCAATTCTATTTTGATTCTAATGTGCTCTCTGATGAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VjyNUw/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341200" ref_strand="+" ref_description="SGN-U341200        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>caaaagagcaaaaaatgacctgcagtaagaaacccaagatattaccacgtgtaaaaggctaaaaactgacacacaactggaagttgtcataattttagattcagacagcatgtcctacaagtaattttactgcacaagacaaaataggaaaatacatgtaaaactgtatagagaagttacagtaacatatatctagcaaccaatgagaagaaacagttcattctacattacacaaatatccttctaaataggacgaccacaagttcctcgcgtccagcttttatagtagtagtaataataatatgtgggtccacctgctaacctcagtgaacaggtttactcgaccacctgtgcttgtgagttgtaagggactgcctggacaccaactcgaataaaaaataagttgctgattgacttctcatggaacgtaatacaagatgctttctcttatatgattaagcctgtatcattgaagacactctgaaagaaaccaaatctcagagtaagatgtcagattgttagcttgttgttcaagagacatgatgtattgttctgagggactattgagtcaatttcagtttctccagctaatatatttaacaacaacttacatttaggttgtaaatttttcaaggaatttcccataagttcatatcatacattatgatccgcatgaaactaccatcatcctattgacatcttataatgctgagtagtagaagcaataatgatggttccgtagaatatgttccttgggaacttaatggctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-imH7X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0093E04.1" temp_strand="+" temp_description="C07SLm0093E04.1  AC212653.1 htgs_phase:1 submitted_to_sgn_as:gi|158262146|gb|AC212653.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0093E04, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="81572" stop="82940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81872" g_stop="82640" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0093E04.1" gen_strand="+" ref_id="SGN-U341200" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0093E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81872" e_stop="82640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGAGCAAAAAATGACCTGCAGTAAGAAACCCAAGATATTACCACGTGTAAAAGGCTAAAAACTGACACACAACTGGAAGTTGTCATAATTTTAGATTCAGACAGCATGTCCTACAAGTAATTTTACTGCACAAGACAAAATAGGAAAATACATGTAAAACTGTATAGAGAAGTTACAGTAACATATATCTAGCAACCAATGAGAAGAAACAGTTCATTCTACATTACACAAATATCCTTCTAAATAGGACGACCACAAGTTCCTCGCGTCCAGCTTTTATAGTAGTAGTAATAATAATATGTGGGTCCACCTGCTAACCTCAGTGAACAGGTTTACTCGACCACCTGTGCTTGTGAGTTGTAAGGGACTGCCTGGACACCAACTCGAATAAAAAATAAGTTGCTGATTGACTTCTCATGGAACGTAATACAAGATGCTTTCTCTTATATGATTAAGCCTGTATCATTGAAGACACTCTGAAAGAAACCAAATCTCAGAGTAAGATGTCAGATTGTTAGCTTGTTGTTCAAGAGACATGATGTATTGTTCTGAGGGACTATTGAGTCAATTTCAGTTTCTCCAGCTAATATATTTAACAACAACTTACATTTAGGTTGTAAATTTTTCAAGGAATTTCCCATAAGTTCATATCATACATTATGATCCGCATGAAACTACCATCATCCTATTGACATCTTATAATGCTGAGTAGTAGAAGCAATAATGAT-GTTCCGTAGAATATGTT-CTTGGGAACTTAATGGCTGT</genome_strand>
        <mrna_strand>CAAAAGAGCAAAAAATGACCTGCAGTAAGAAACCCAAGATATTACCACGTGTAAAAGGCTAAAAACTGACACACAACTGGAAGTTGTCATAATTTTAGATTCAGACAGCATGTCCTACAAGTAATTTTACTGCACAAGACAAAATAGGAAAATACATGTAAAACTGTATAGAGAAGTTACAGTAACATATATCTAGCAACCAATGAGAAGAAACAGTTCATTCTACATTACACAAATATCCTTCTAAATAGGACGACCACAAGTTCCTCGCGTCCAGCTTTTATAGTAGTAGTAATAATAATATGTGGGTCCACCTGCTAACCTCAGTGAACAGGTTTACTCGACCACCTGTGCTTGTGAGTTGTAAGGGACTGCCTGGACACCAACTCGAATAAAAAATAAGTTGCTGATTGACTTCTCATGGAACGTAATACAAGATGCTTTCTCTTATATGATTAAGCCTGTATCATTGAAGACACTCTGAAAGAAACCAAATCTCAGAGTAAGATGTCAGATTGTTAGCTTGTTGTTCAAGAGACATGATGTATTGTTCTGAGGGACTATTGAGTCAATTTCAGTTTCTCCAGCTAATATATTTAACAACAACTTACATTTAGGTTGTAAATTTTTCAAGGAATTTCCCATAAGTTCATATCATACATTATGATCCGCATGAAACTACCATCATCCTATTGACATCTTATAATGCTGAGTAGTAGAAGCAATAATGATGGTTCCGTAGAATATGTTCCTTGGGAACTTAATGGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9371" PGL_stop="6229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9371" e_stop="9036"/>
            <exon e_start="8452" e_stop="8306"/>
            <exon e_start="8150" e_stop="8003"/>
            <exon e_start="6326" e_stop="6229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9371" e_stop="9036" e_length="336"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.977">
            <gDNA_intron_boundary i_start="9035" i_stop="8453" i_length="583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8452" e_stop="8306" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.883">
            <gDNA_intron_boundary i_start="8305" i_stop="8151" i_length="155"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8150" e_stop="8003" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8002" i_stop="6327" i_length="1676"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6326" e_stop="6229" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9371" stop="9036"/>
              <exon start="8452" stop="8306"/>
              <exon start="8150" stop="8003"/>
              <exon start="6326" stop="6229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCAGCTCAAATGAAGTACGTTGGCGCTCTGGGGAAAACAATGGCGTTATCACTATCTTCACGCTCTCTCTTCACTTCCTCTTATAAATCCATTTCTCCTCTCAGTAGAAACCCCTTTTCTTCCTTCCCAATTCGTCAGTATCGTATTCTTTTTGTTCTTGATCCCTCTAACAACAACAACAACAACAAAACTAACCGGAACAAGTTGCTGAGACGTCGCACTTCTTTCTCTACCCATGCTTCCACCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATGGTTCTCCCAACTAACGAGTCATCAGATGGGCTACTTCGAATTCGCCATACG : TGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGGCCCTGGATCGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGTGACCTGAAGAGGATTAAGAAGGAAATG : GATCGAATTATCAGCCGAAACTTGCCTCTTGTTAGAGAAGAAGTTAGCCGGGATGAAGCTCAAAGAAGAATAATGTCTATCAACGAACCTTACAAGATCGAAATTTTAGAGAGCATAAAGGAGGAACCAATTACCATTTATCATATTG : GTGATGAATGGTGGGATCTTTGTGCGGGACCTCATGTTGAAACTACAGGAAAGATTAACAGAAAAGCTATTGAGCTTGAATCTGTTGCTGGTGCTTAC</gDNA_template>
            <first_frame> K  A  A  Q  M  K  Y  V  G  A  L  G  K  T  M  A  L  S  L  S  S  R  S  L  F  T  S  S  Y  K  S  I  S  P  L  S  R  N  P  F  S  S  F  P  I  R  Q  Y  R  I  L  F  V  L  D  P  S  N  N  N  N  N  N  K  T  N  R  N  K  L  L  R  R  R  T  S  F  S  T  H  A  S  T  A  L  Q  E  A  P  A  P  N  E  K  M  V  L  P  T  N  E  S  S  D  G  L  L  R  I  R  H  T  :  C  A  H  V  M  A  M  A  V  Q  K  L  Y  P  N  A  K  V  T  I  G  P  W  I  D  N  G  F  Y  Y  D  F  D  M  E  P  L  T  D  S  D  L  K  R  I  K  K  E  M  :  D  R  I  I  S  R  N  L  P  L  V  R  E  E  V  S  R  D  E  A  Q  R  R  I  M  S  I  N  E  P  Y  K  I  E  I  L  E  S  I  K  E  E  P  I  T  I  Y  H  I   : G  D  E  W  W  D  L  C  A  G  P  H  V  E  T  T  G  K  I  N  R  K  A  I  E  L  E  S  V  A  G  A  Y </first_frame>
            <second_frame>  K  Q  L  K  *  S  T  L  A  L  W  G  K  Q  W  R  Y  H  Y  L  H  A  L  S  S  L  P  L  I  N  P  F  L  L  S  V  E  T  P  F  L  P  S  Q  F  V  S  I  V  F  F  L  F  L  I  P  L  T  T  T  T  T  T  K  L  T  G  T  S  C  *  D  V  A  L  L  S  L  P  M  L  P  P  P  Y  K  K  L  L  P  Q  M  R  K  W  F  S  Q  L  T  S  H  Q  M  G  Y  F  E  F  A  I  R :   V  L  M  L  W  P  W  Q  S  K  N  S  T  R  M  Q  K  *  Q  L  G  P  G  S  I  M  V  F  I  M  I  L  I  W  S  L  *  L  T  V  T  *  R  G  L  R  R  K  W :   I  E  L  S  A  E  T  C  L  L  L  E  K  K  L  A  G  M  K  L  K  E  E  *  C  L  S  T  N  L  T  R  S  K  F  *  R  A  *  R  R  N  Q  L  P  F  I  I  L  :  V  M  N  G  G  I  F  V  R  D  L  M  L  K  L  Q  E  R  L  T  E  K  L  L  S  L  N  L  L  L  V  L   </second_frame>
            <third_frame>   S  S  S  N  E  V  R  W  R  S  G  E  N  N  G  V  I  T  I  F  T  L  S  L  H  F  L  L  *  I  H  F  S  S  Q  *  K  P  L  F  F  L  P  N  S  S  V  S  Y  S  F  C  S  *  S  L  *  Q  Q  Q  Q  Q  Q  N  *  P  E  Q  V  A  E  T  S  H  F  F  L  Y  P  C  F  H  R  P  T  R  S  S  C  P  K  *  E  N  G  S  P  N  *  R  V  I  R  W  A  T  S  N  S  P  Y   : V  C  S  C  Y  G  H  G  S  P  K  T  L  P  E  C  K  S  D  N  W  A  L  D  R  *  W  F  L  L  *  F  *  Y  G  A  F  D  *  Q  *  P  E  E  D  *  E  G  N   : G  S  N  Y  Q  P  K  L  A  S  C  *  R  R  S  *  P  G  *  S  S  K  K  N  N  V  Y  Q  R  T  L  Q  D  R  N  F  R  E  H  K  G  G  T  N  Y  H  L  S  Y  W :   *  *  M  V  G  S  L  C  G  T  S  C  *  N  Y  R  K  D  *  Q  K  S  Y  *  A  *  I  C  C  W  C  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9371" stop="9036"/>
                    <exon start="8452" stop="8306"/>
                    <exon start="8150" stop="8003"/>
                    <exon start="6326" stop="6229"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAAQMKYVGALGKTMALSLSSRSLFTSSYKSISPLSRNPFSSFPIRQYRILFVLDPSNNNNNNKTNRNKLLRRRTSFSTHASTALQEAPAPNEKMVLPTNESSDGLLRIRHTCAHVMAMAVQKLYPNAKVTIGPWIDNGFYYDFDMEPLTDSDLKRIKKEMDRIISRNLPLVREEVSRDEAQRRIMSINEPYKIEILESIKEEPITIYHIGDEWWDLCAGPHVETTGKINRKAIELESVAGAY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14701" PGL_stop="14364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14701" e_stop="14364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="14701" e_stop="14364" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14701" stop="14364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATAAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAATCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGTTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGATTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  M  S  *  S  I  T  V  K  F  T  H  K  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  *  S  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  V  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F  V  T  P  D   </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  C  H  N  Q  L  P  S  S  S  H  I  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  N  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  F  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  D  S  *  H  P  I  </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  V  I  I  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  I  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  I  R  D  T  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0093E04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="15165" PGL_stop="15449"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15165" e_stop="15449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="15165" e_stop="15449" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15165" stop="15449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGATATCTGACCATCTTCACTCTCTTTCGCGGATGGTTAGAACTAGAACAACGACTGCGCCAACACCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  *  Y  L  T  I  F  T  L  F  R  G  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  Q  P  L  G  L  * </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  D  I  *  P  S  S  L  S  F  A  D  G  *  N  *  N  N  D  C  A  N  T  N  I  G  K  T  R  S  V  *  A  S  H  W  G  C   </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  I  S  D  H  L  H  S  L  S  R  M  V  R  T  R  T  T  T  A  P  T  P  T  S  A  R  Q  E  A  S  E  P  A  T  G  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0093E04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="15888" PGL_stop="15456"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15888" e_stop="15456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="15888" e_stop="15456" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15888" stop="15456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTTGAAGACTTGAGGTTTCAATTTCAAGAACTTATTGAAAAGTTCATGCTGGTCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTATTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTGAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTC</gDNA_template>
            <first_frame> P  L  K  T  *  G  F  N  F  K  N  L  L  K  S  S  C  W  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  I  G  A  E  N  T  G  G  V  *  P  *  S  D  N  P  L  R  *  A  S  T  *  F  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  T  L  </first_frame>
            <second_frame>  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  G  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  F  D  L  D  Q  I  T  H  *  D  K  Q  A  P  D  L  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  A  Q  F  P  L  P  H  P  L  L  L  L  L  Q  S  V  E  E  S  P  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </second_frame>
            <third_frame>   L  E  D  L  R  F  Q  F  Q  E  L  I  E  K  F  M  L  V  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  Y  W  C  R  K  H  W  R  C  L  T  L  I  R  *  P  T  E  I  S  K  H  L  I  Y  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  L  S  F  P  F  L  T  L  S  Y  Y  F  F  S  R  W  R  S  H  R  P  S  I  R  W  A  R  C  S  S  S  S  S  R  G  R  P  P  T  T  S  T  T  A  S  C  R  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15679" stop="15458"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTEISKHLIYHLWGRLGWQFLILHLLSFPFLTLSYYFFSRWRSHRPSIRWARCSSSSSRGRPPTTSTTASCRYS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15654" stop="15457"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIISGVGWGGNSSFCTCSVSPSSPSLTTSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAATL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="15523" PGL_stop="16076"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15523" e_stop="16076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="15523" e_stop="16076" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15523" stop="16076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATAAATCAGGTGCTTGCTTATCTCAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAATACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGACCAGCATGAACTTTTCAATAAGTTCTTGAAATTGAAACCTCAAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  A  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  K  S  G  A  C  L  S  Q  W  V  I  *  S  R  S  N  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  P  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  I  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  N  K  F  L  K  L  K  P  Q  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  S  K  C  R  M  R  N  C  H  P  N  L  P  Q  R  *  *  I  R  C  L  L  I  S  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  Q  Y  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  T  S  M  N  F  S  I  S  S  *  N  *  N  L  K  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15524" stop="16075"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVVREGEEGETEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPIPPVSEVQHAATMAPRMDASLDIGTFPRLTTGPIMTNDQHELFNKFLKLKPQVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="17401" PGL_stop="16689"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17401" e_stop="16689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="17401" e_stop="16689" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17401" stop="16689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTGTTCTTCACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCCCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  Y  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  P  C  P  Y  F  Q  L  M  I  T  R  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  G  I  L  V  L  Y  G  Y  L  V  Q  L  S  V  V  Y  A  H  P  K  T  P  I  L  V  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  L  V  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  M  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  L  F  F  T  S  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  P  N  N  S  *  S  W  A  F  N  S  L  N  S  A  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  L  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  S  V  F  S  I  D  D  N  Q  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  W  D  T  C  S  L  W  L  P  C  S  T  V  G  S  L  C  T  S  E  N  S  H  P  C  S  S  Q  A  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  P  T  T  L  E  V  G  L  L  T  L  L  T  P  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17236" stop="16898"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYVINKYDHKEIQIWLKNPVHQTHERSRGIRKTKRHYYKFVMPIPGSKSSLWHIPCPYFQLMITRSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="18882" PGL_stop="18706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18882" e_stop="18706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="18882" e_stop="18706" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18882" stop="18706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATCGTTCACTCAGACTGACCATTG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  H  S  D  *  P  L </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  T  H  E  A  Y  P  P  I  L  E  S  F  T  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  Y  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0093E04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="26982" PGL_stop="19736"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26982" e_stop="26881"/>
            <exon e_start="23026" e_stop="23010"/>
            <exon e_start="21986" e_stop="21979"/>
            <exon e_start="19964" e_stop="19736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="0.571"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="0.706"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="26982" e_stop="26881" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="26880" i_stop="23027" i_length="3854"/>
          </intron>
          <exon e_serial="2" e_score="0.706">
            <gDNA_exon_boundary e_start="23026" e_stop="23010" e_length="17"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="23009" i_stop="21987" i_length="1023"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="21986" e_stop="21979" e_length="8"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21978" i_stop="19965" i_length="2014"/>
          </intron>
          <exon e_serial="4" e_score="0.956">
            <gDNA_exon_boundary e_start="19964" e_stop="19736" e_length="229"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26982" stop="26881"/>
              <exon start="23026" stop="23010"/>
              <exon start="21986" stop="21979"/>
              <exon start="19964" stop="19736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335320" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAAAAAAAAAA : GTTCATGGAGTATTGAA : ATTGATAT : TTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGATGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGAC</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  K  K  K  K  :  V  H  G  V  L  K :   L  I   : F  Y  S  R  L  P  L  L  T  P  K  *  L  D  L  L  T  *  T  H  *  L  Y  N  *  S  R  N  S  P  K  R  P  L  K  R  V  K  K  S  D  P  D  W  D  Y  A  T  C  D  G  P  S  C  L  R  W  S  V  L  Q  V  V  A  R  F  R  D  S  I  S  T  K  E  S  V   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  R  K  K  K  K :   F  M  E  Y  *   : N  *  Y  :  F  T  Q  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  K  P  T  N  F  I  I  K  V  G  I  V  Q  N  V  P  *  N  V  *  R  N  P  T  Q  T  G  I  T  Q  P  V  T  V  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  E  K  K  K   : S  S  W  S  I  E  :  I  D  I :   L  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  *  E  *  S  K  T  S  L  K  T  C  K  E  I  R  P  R  L  G  L  R  N  L  *  R  S  V  V  P  A  M  V  R  P  A  G  R  R  K  V  Q  R  L  N  F  H  Q  R  V  C  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26980" stop="26881"/>
                    <exon start="23026" stop="23010"/>
                    <exon start="21986" stop="21979"/>
                    <exon start="19964" stop="19895"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFFFFFLEKKKSSWSIEIDILLKVTSFNPQVIRLININPLTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24179" e_stop="23431"/>
            <exon e_start="23026" e_stop="22772"/>
            <exon e_start="22400" e_stop="21915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24179" e_stop="23431" e_length="749"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.988">
            <gDNA_intron_boundary i_start="23430" i_stop="23027" i_length="404"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23026" e_stop="22772" e_length="255"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22771" i_stop="22401" i_length="371"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="22400" e_stop="21915" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24179" stop="23431"/>
              <exon start="23026" stop="22772"/>
              <exon start="22400" stop="21915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTTGATTCAATCATCCCAAATCCCAAGAAAATCAATTCTTGCAACAATTTGGGACATACCCAATTTCTTGAATTTGAGTTTTTGCTGAGCAAAACAGAACAAAAAAAAACAGAGCACAAACATGGATATACTTTTAACAACTTTATTATTTTCATCAATCTTGCTTTCAACTCTATTTTCTACTAGTTATGGTCAGAATCAAAATTGCTCTGCTTTTGCATTCAGAAATAACCAAATATTTGCAACTTGTAATCCTCTGCCTCTACTAAACTCTGTTCTTCACTGGAGCTACCATCCAGATAACCATACAGTTGATCTTGCTTACAGACATGGAGGTGTACCAAATACAGATTGGGTAGCTTGGGGTTTAAATATTGATGGAACAATGATGGTTGGTTCACAATGTTTAGTTGCATTTAGAAATTCTAGTGGAGAAATTCATGCTTACACTTCCCCTGTTTCTAGTTATGCTACTCAGTTAACAGAGGGAGCTTTGAGTTTCAATGTTCCGAGAATTGAAGCTGAGTATTCCAACAATGAGTTCATTATCTTTGCGACTTTACAACTTCCTGCTGGAAGGACTAGTTTTAATCAAGCTTGGCAAAATGGTGCTGTTTCTGGTCAGGCTTTGACTGCTCATACTCAATCTGGTGATAACATGAGATCTTTTGGTAGTGTTGATTTTGCTAATGGAGAGTTAGGTGGTGGTGGTAGTTCAGTTACTTCTAGACAACGTAGAAGAAAT : GTTCATGGAGTATTGAATGCAGTGAGTTGGGGAGTGTTAATGCCAATGGGTGCAGTATTTGCAAGGTACTTGAAGGTTTTCAAAGCAGCAAATCCAGCTTGGTTTTATATACATGTTGCTTGTCAAACTTCTGCATATATTGTTGGTGTTGCTGGATGGGGAACTGGTCTCAAACTTGGCAGTGATTCTACCGGTATCGAATTCACTACTCACAGGAACATTGGCATCACTCTCTTTTGCCTCGGAACACTTCAG : GTATTTGCTTTGCTTCTGAGGCCAAAGCCAGACCACAAGTACAGATTATACTGGAACATCTACCACCATGCTGTTGGATACGCGGTAATAAGTCTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAATGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAATGGAACAAATGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTCTTTTTTTTTTTTAATTTTTGCAGATTGATATATATTCTTGTATACATCATATATGTTGAAAGACCACCTATTTGTGGTTTTATTTATTATTACTA</gDNA_template>
            <first_frame> F  S  *  F  N  H  P  K  S  Q  E  N  Q  F  L  Q  Q  F  G  T  Y  P  I  S  *  I  *  V  F  A  E  Q  N  R  T  K  K  N  R  A  Q  T  W  I  Y  F  *  Q  L  Y  Y  F  H  Q  S  C  F  Q  L  Y  F  L  L  V  M  V  R  I  K  I  A  L  L  L  H  S  E  I  T  K  Y  L  Q  L  V  I  L  C  L  Y  *  T  L  F  F  T  G  A  T  I  Q  I  T  I  Q  L  I  L  L  T  D  M  E  V  Y  Q  I  Q  I  G  *  L  G  V  *  I  L  M  E  Q  *  W  L  V  H  N  V  *  L  H  L  E  I  L  V  E  K  F  M  L  T  L  P  L  F  L  V  M  L  L  S  *  Q  R  E  L  *  V  S  M  F  R  E  L  K  L  S  I  P  T  M  S  S  L  S  L  R  L  Y  N  F  L  L  E  G  L  V  L  I  K  L  G  K  M  V  L  F  L  V  R  L  *  L  L  I  L  N  L  V  I  T  *  D  L  L  V  V  L  I  L  L  M  E  S  *  V  V  V  V  V  Q  L  L  L  D  N  V  E  E  M :   F  M  E  Y  *  M  Q  *  V  G  E  C  *  C  Q  W  V  Q  Y  L  Q  G  T  *  R  F  S  K  Q  Q  I  Q  L  G  F  I  Y  M  L  L  V  K  L  L  H  I  L  L  V  L  L  D  G  E  L  V  S  N  L  A  V  I  L  P  V  S  N  S  L  L  T  G  T  L  A  S  L  S  F  A  S  E  H  F  R :   Y  L  L  C  F  *  G  Q  S  Q  T  T  S  T  D  Y  T  G  T  S  T  T  M  L  L  D  T  R  *  *  V  *  A  S  R  M  F  T  K  D  L  M  H  *  M  D  R  R  I  G  R  G  L  T  L  V  *  S  *  P  *  V  P  L  L  F  Y  *  K  L  L  L  G  S  L  S  L  K  G  K  K  Q  T  L  T  S  T  H  K  M  E  Q  M  V  L  L  I  L  M  E  M  G  L  I  N  R  H  N  L  K  I  S  L  *  T  F  L  Y  V  Y  M  F  F  V  V  W  S  D  F  V  F  F  F  F  N  F  C  R  L  I  Y  I  L  V  Y  I  I  Y  V  E  R  P  P  I  C  G  F  I  Y  Y  Y   </first_frame>
            <second_frame>  F  L  D  S  I  I  P  N  P  K  K  I  N  S  C  N  N  L  G  H  T  Q  F  L  E  F  E  F  L  L  S  K  T  E  Q  K  K  T  E  H  K  H  G  Y  T  F  N  N  F  I  I  F  I  N  L  A  F  N  S  I  F  Y  *  L  W  S  E  S  K  L  L  C  F  C  I  Q  K  *  P  N  I  C  N  L  *  S  S  A  S  T  K  L  C  S  S  L  E  L  P  S  R  *  P  Y  S  *  S  C  L  Q  T  W  R  C  T  K  Y  R  L  G  S  L  G  F  K  Y  *  W  N  N  D  G  W  F  T  M  F  S  C  I  *  K  F  *  W  R  N  S  C  L  H  F  P  C  F  *  L  C  Y  S  V  N  R  G  S  F  E  F  Q  C  S  E  N  *  S  *  V  F  Q  Q  *  V  H  Y  L  C  D  F  T  T  S  C  W  K  D  *  F  *  S  S  L  A  K  W  C  C  F  W  S  G  F  D  C  S  Y  S  I  W  *  *  H  E  I  F  W  *  C  *  F  C  *  W  R  V  R  W  W  W  *  F  S  Y  F  *  T  T  *  K  K   : C  S  W  S  I  E  C  S  E  L  G  S  V  N  A  N  G  C  S  I  C  K  V  L  E  G  F  Q  S  S  K  S  S  L  V  L  Y  T  C  C  L  S  N  F  C  I  Y  C  W  C  C  W  M  G  N  W  S  Q  T  W  Q  *  F  Y  R  Y  R  I  H  Y  S  Q  E  H  W  H  H  S  L  L  P  R  N  T  S   : G  I  C  F  A  S  E  A  K  A  R  P  Q  V  Q  I  I  L  E  H  L  P  P  C  C  W  I  R  G  N  K  S  E  H  R  E  C  L  Q  R  I  *  C  I  E  W  T  E  E  L  E  E  G  L  H  W  C  D  H  S  H  R  C  H  C  C  F  I  R  S  F  Y  L  V  H  C  H  *  K  E  K  N  R  L  *  Q  A  H  T  K  W  N  K  W  Y  C  *  S  L  W  K  W  D  S  S  T  G  I  T  *  K  Y  H  F  E  H  F  C  M  F  I  C  F  L  L  F  G  Q  I  L  S  F  F  F  L  I  F  A  D  *  Y  I  F  L  Y  T  S  Y  M  L  K  D  H  L  F  V  V  L  F  I  I  T  </second_frame>
            <third_frame>   F  L  I  Q  S  S  Q  I  P  R  K  S  I  L  A  T  I  W  D  I  P  N  F  L  N  L  S  F  C  *  A  K  Q  N  K  K  K  Q  S  T  N  M  D  I  L  L  T  T  L  L  F  S  S  I  L  L  S  T  L  F  S  T  S  Y  G  Q  N  Q  N  C  S  A  F  A  F  R  N  N  Q  I  F  A  T  C  N  P  L  P  L  L  N  S  V  L  H  W  S  Y  H  P  D  N  H  T  V  D  L  A  Y  R  H  G  G  V  P  N  T  D  W  V  A  W  G  L  N  I  D  G  T  M  M  V  G  S  Q  C  L  V  A  F  R  N  S  S  G  E  I  H  A  Y  T  S  P  V  S  S  Y  A  T  Q  L  T  E  G  A  L  S  F  N  V  P  R  I  E  A  E  Y  S  N  N  E  F  I  I  F  A  T  L  Q  L  P  A  G  R  T  S  F  N  Q  A  W  Q  N  G  A  V  S  G  Q  A  L  T  A  H  T  Q  S  G  D  N  M  R  S  F  G  S  V  D  F  A  N  G  E  L  G  G  G  G  S  S  V  T  S  R  Q  R  R  R  N  :  V  H  G  V  L  N  A  V  S  W  G  V  L  M  P  M  G  A  V  F  A  R  Y  L  K  V  F  K  A  A  N  P  A  W  F  Y  I  H  V  A  C  Q  T  S  A  Y  I  V  G  V  A  G  W  G  T  G  L  K  L  G  S  D  S  T  G  I  E  F  T  T  H  R  N  I  G  I  T  L  F  C  L  G  T  L  Q  :  V  F  A  L  L  L  R  P  K  P  D  H  K  Y  R  L  Y  W  N  I  Y  H  H  A  V  G  Y  A  V  I  S  L  S  I  A  N  V  Y  K  G  F  D  A  L  N  G  Q  K  N  W  K  R  A  Y  T  G  V  I  I  A  I  G  A  I  A  V  L  L  E  A  F  T  W  F  I  V  I  K  R  K  K  T  D  S  N  K  H  T  Q  N  G  T  N  G  T  V  N  P  Y  G  N  G  T  H  Q  Q  A  *  L  K  N  I  T  L  N  I  F  V  C  L  Y  V  F  C  C  L  V  R  F  C  L  F  F  F  *  F  L  Q  I  D  I  Y  S  C  I  H  H  I  C  *  K  T  T  Y  L  W  F  Y  L  L  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24087" stop="23431"/>
                    <exon start="23026" stop="22772"/>
                    <exon start="22400" stop="22077"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKQNKKKQSTNMDILLTTLLFSSILLSTLFSTSYGQNQNCSAFAFRNNQIFATCNPLPLLNSVLHWSYHPDNHTVDLAYRHGGVPNTDWVAWGLNIDGTMMVGSQCLVAFRNSSGEIHAYTSPVSSYATQLTEGALSFNVPRIEAEYSNNEFIIFATLQLPAGRTSFNQAWQNGAVSGQALTAHTQSGDNMRSFGSVDFANGELGGGGSSVTSRQRRRNVHGVLNAVSWGVLMPMGAVFARYLKVFKAANPAWFYIHVACQTSAYIVGVAGWGTGLKLGSDSTGIEFTTHRNIGITLFCLGTLQVFALLLRPKPDHKYRLYWNIYHHAVGYAVISLSIANVYKGFDALNGQKNWKRAYTGVIIAIGAIAVLLEAFTWFIVIKRKKTDSNKHTQNGTNGTVNPYGNGTHQQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="30137" PGL_stop="30764"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30137" e_stop="30764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="30137" e_stop="30764" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30137" stop="30764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTTCTTCCCTTCTTTCTCATTTTCCTCTCTTTTTTCCCCTTCACAATAGTCTTTTCCTCTCATTCATGCACAACCTCAACATCTACTAAAACATTTGAAAAATGTATGCCACTCCCTTCACAAGATGCCTCAATTGCTTGGACATTCCATCCACATAATGTCACACTTGATATAGTCTTTTTTGGTTCATTTATATCTCCTTCTGGTTGGGTTGGATTTGGTATTAACCCTAACTCCCCTGAAATGACAGGAACTCGCGCGTTAATCGCCTTTCCTGATCCAAATTCAGGCCAGCTTGTTCTTCTACCATACATAATTGATCCATCAGTCAAGCTCCAAAAAAGTCCACTTTTATCGAAACCTTTAGACATTCATTTAGTAGCCTCTTCATCAACTTTATATGGTGGCAAAATGGCTACTATACATAATGGTGCTACAATTCAAATATATGCCACATTAAAACTTGTGTCCAATAAGACCAAAAATGTACATTTTGTTTGGAACCGTGGCATTTATGTACAAGGCTATTCACCAACGATTCATCCAACTAACATAAATGATCTTTCTTCAATAGCCACAATTGATGTCCTTTCAGGTTCACAATCAACATGTCACAACAATTTCT</gDNA_template>
            <first_frame> M  F  L  P  F  F  L  I  F  L  S  F  F  P  F  T  I  V  F  S  S  H  S  C  T  T  S  T  S  T  K  T  F  E  K  C  M  P  L  P  S  Q  D  A  S  I  A  W  T  F  H  P  H  N  V  T  L  D  I  V  F  F  G  S  F  I  S  P  S  G  W  V  G  F  G  I  N  P  N  S  P  E  M  T  G  T  R  A  L  I  A  F  P  D  P  N  S  G  Q  L  V  L  L  P  Y  I  I  D  P  S  V  K  L  Q  K  S  P  L  L  S  K  P  L  D  I  H  L  V  A  S  S  S  T  L  Y  G  G  K  M  A  T  I  H  N  G  A  T  I  Q  I  Y  A  T  L  K  L  V  S  N  K  T  K  N  V  H  F  V  W  N  R  G  I  Y  V  Q  G  Y  S  P  T  I  H  P  T  N  I  N  D  L  S  S  I  A  T  I  D  V  L  S  G  S  Q  S  T  C  H  N  N  F  </first_frame>
            <second_frame>  C  F  F  P  S  F  S  F  S  S  L  F  S  P  S  Q  *  S  F  P  L  I  H  A  Q  P  Q  H  L  L  K  H  L  K  N  V  C  H  S  L  H  K  M  P  Q  L  L  G  H  S  I  H  I  M  S  H  L  I  *  S  F  L  V  H  L  Y  L  L  L  V  G  L  D  L  V  L  T  L  T  P  L  K  *  Q  E  L  A  R  *  S  P  F  L  I  Q  I  Q  A  S  L  F  F  Y  H  T  *  L  I  H  Q  S  S  S  K  K  V  H  F  Y  R  N  L  *  T  F  I  *  *  P  L  H  Q  L  Y  M  V  A  K  W  L  L  Y  I  M  V  L  Q  F  K  Y  M  P  H  *  N  L  C  P  I  R  P  K  M  Y  I  L  F  G  T  V  A  F  M  Y  K  A  I  H  Q  R  F  I  Q  L  T  *  M  I  F  L  Q  *  P  Q  L  M  S  F  Q  V  H  N  Q  H  V  T  T  I  S </second_frame>
            <third_frame>   V  S  S  L  L  S  H  F  P  L  F  F  P  L  H  N  S  L  F  L  S  F  M  H  N  L  N  I  Y  *  N  I  *  K  M  Y  A  T  P  F  T  R  C  L  N  C  L  D  I  P  S  T  *  C  H  T  *  Y  S  L  F  W  F  I  Y  I  S  F  W  L  G  W  I  W  Y  *  P  *  L  P  *  N  D  R  N  S  R  V  N  R  L  S  *  S  K  F  R  P  A  C  S  S  T  I  H  N  *  S  I  S  Q  A  P  K  K  S  T  F  I  E  T  F  R  H  S  F  S  S  L  F  I  N  F  I  W  W  Q  N  G  Y  Y  T  *  W  C  Y  N  S  N  I  C  H  I  K  T  C  V  Q  *  D  Q  K  C  T  F  C  L  E  P  W  H  L  C  T  R  L  F  T  N  D  S  S  N  *  H  K  *  S  F  F  N  S  H  N  *  C  P  F  R  F  T  I  N  M  S  Q  Q  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30137" stop="30763"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MFLPFFLIFLSFFPFTIVFSSHSCTTSTSTKTFEKCMPLPSQDASIAWTFHPHNVTLDIVFFGSFISPSGWVGFGINPNSPEMTGTRALIAFPDPNSGQLVLLPYIIDPSVKLQKSPLLSKPLDIHLVASSSTLYGGKMATIHNGATIQIYATLKLVSNKTKNVHFVWNRGIYVQGYSPTIHPTNINDLSSIATIDVLSGSQSTCHNNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="31440" PGL_stop="30851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31440" e_stop="30851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="31440" e_stop="30851" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31440" stop="30851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAACTTGCAAAATCTTAGTTCAAATTATATTTTGAACAATCAAATTACAAATAACGACATACATGATGATACATGTGATACAATAATTTAATCAACCATGACTTGATCCACTAAATTTGGCAGAACTCCCAATTAATCCCTCTCTCCTCATCTTATCTTCCTTTGCTTTTCTACAAAACACAACCCAAGAATTCACTTCTAATGCCACAGCAACCCCAATCAATGTAGACAAACACAAACAATAACCCAATTTAACATAAGACCTTCCTTCTCCCATCACTTCAAATCCTTGAAAAACATTCACAACTCCTAATACCACACAACCATAACCAACAAAATGATGATATGATTTCCAATACTTCCTAAACTTGTTTGTTGTCTTAGGCCTAAAAAACAATGCCAATGTTTGTAACATGCCCAAAACAAACGTCGCGATCCCTAAATTTCGATGTAATCCATACACTCTCCCTCCTGAAAGTTGCCCTAATCGAATCCCTATTGCAAATCCAATAGTACCTAATGAAATCCCTGATAATTGTACCCCTGCATGTACATAAAACCATGTTGCCCCTAGGGACTCAACATGCCT</gDNA_template>
            <first_frame> *  T  C  K  I  L  V  Q  I  I  F  *  T  I  K  L  Q  I  T  T  Y  M  M  I  H  V  I  Q  *  F  N  Q  P  *  L  D  P  L  N  L  A  E  L  P  I  N  P  S  L  L  I  L  S  S  F  A  F  L  Q  N  T  T  Q  E  F  T  S  N  A  T  A  T  P  I  N  V  D  K  H  K  Q  *  P  N  L  T  *  D  L  P  S  P  I  T  S  N  P  *  K  T  F  T  T  P  N  T  T  Q  P  *  P  T  K  *  *  Y  D  F  Q  Y  F  L  N  L  F  V  V  L  G  L  K  N  N  A  N  V  C  N  M  P  K  T  N  V  A  I  P  K  F  R  C  N  P  Y  T  L  P  P  E  S  C  P  N  R  I  P  I  A  N  P  I  V  P  N  E  I  P  D  N  C  T  P  A  C  T  *  N  H  V  A  P  R  D  S  T  C   </first_frame>
            <second_frame>  K  L  A  K  S  *  F  K  L  Y  F  E  Q  S  N  Y  K  *  R  H  T  *  *  Y  M  *  Y  N  N  L  I  N  H  D  L  I  H  *  I  W  Q  N  S  Q  L  I  P  L  S  S  S  Y  L  P  L  L  F  Y  K  T  Q  P  K  N  S  L  L  M  P  Q  Q  P  Q  S  M  *  T  N  T  N  N  N  P  I  *  H  K  T  F  L  L  P  S  L  Q  I  L  E  K  H  S  Q  L  L  I  P  H  N  H  N  Q  Q  N  D  D  M  I  S  N  T  S  *  T  C  L  L  S  *  A  *  K  T  M  P  M  F  V  T  C  P  K  Q  T  S  R  S  L  N  F  D  V  I  H  T  L  S  L  L  K  V  A  L  I  E  S  L  L  Q  I  Q  *  Y  L  M  K  S  L  I  I  V  P  L  H  V  H  K  T  M  L  P  L  G  T  Q  H  A  </second_frame>
            <third_frame>   N  L  Q  N  L  S  S  N  Y  I  L  N  N  Q  I  T  N  N  D  I  H  D  D  T  C  D  T  I  I  *  S  T  M  T  *  S  T  K  F  G  R  T  P  N  *  S  L  S  P  H  L  I  F  L  C  F  S  T  K  H  N  P  R  I  H  F  *  C  H  S  N  P  N  Q  C  R  Q  T  Q  T  I  T  Q  F  N  I  R  P  S  F  S  H  H  F  K  S  L  K  N  I  H  N  S  *  Y  H  T  T  I  T  N  K  M  M  I  *  F  P  I  L  P  K  L  V  C  C  L  R  P  K  K  Q  C  Q  C  L  *  H  A  Q  N  K  R  R  D  P  *  I  S  M  *  S  I  H  S  P  S  *  K  L  P  *  S  N  P  Y  C  K  S  N  S  T  *  *  N  P  *  *  L  Y  P  C  M  Y  I  K  P  C  C  P  *  G  L  N  M  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31095" stop="30883"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDFQYFLNLFVVLGLKNNANVCNMPKTNVAIPKFRCNPYTLPPESCPNRIPIANPIVPNEIPDNCTPACT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="47193" PGL_stop="37149"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47193" e_stop="46771"/>
            <exon e_start="37708" e_stop="37149"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.747" acc_prob="1.000" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="47193" e_stop="46771" e_length="423"/>
          </exon>
          <intron i_serial="1" don_prob="0.747" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46770" i_stop="37709" i_length="9062"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37708" e_stop="37149" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47193" stop="46771"/>
              <exon start="37708" stop="37149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTGCAGTAGCTGGAAATGGGAACACCGGGGCAGGAAACTTTAGCAACACTGGAGTTTGGGGTTCATCTTCAATTTCCCCTCAAGGTAGAGGAAATGTTTCTAACCAAAGTGGAAATCTTGGTTATGGGGGTGATGATAGTTTATATGGGTTGACTGGAGGCTATGGAAGAAATGTTACATCAAGTGGGGCTCCTACCTCATCATATCCTGCATCTAATGGTAGCTATGATGGTCCTTTAGCTGATTTTTACAGTGGTGGTTTGGGATATAGTGATTCCACTTGGCGCTCGGCAAATTCTGAGCGAGATGGATCTGGTTCAATTGGTTATGGACTCGGCAATGCACCCTCAGACATGCCACCTAAAAATTCTGCTAGTTATGTTGGCAGTTATGGTGTTGGTAAAAGACAGTCAAACAGCG : GGATTGGTGGCTAGGAGCATATTGGCAAGCAAGGGTGTTACATTAGGTGAAACTTTGGTGTAGAATTTGAATCATGAATTTTGCGTACTTCTATAGCTATATGAAGTTGAGGTGTTAAAGAATTGGATATCCTTTTGTAGGGCTAACTGGAGTTGCTTGTTTTGAAGGTCTAGAGATAGAAGTTTACAAGATTTTGTGCTTAAGGGTTTTTTGTTTTGGGTTTATGTCTTTAGGAGTTCCCCCTTTTTGTTTTCCTTGAGTGAGGTGTAAAATCAGATTGCGGCATATAGTCAGAAATGTATCGTGCATCTCTGGTGAGGCAACGATACATACAAAAACAACATAGACAGAAAGTTTTGCGTAAAATCTTTAGAGTTAAATGTTTTTTGCTGTAACGTTGCAGATTCTCGTCTGGTAATGTGTTTGTTCTGTAGTTTCCCTTAAATGGGATTTTCCTTTTTTTTCATTTGGATGTAAGGGAGGTTGTTGATTTAGTGTGATACATTTTAGGGATACCCATCTAGGGTCTCCTAATGAATAATTTACTGCATATTGATGCT</gDNA_template>
            <first_frame> P  L  Q  *  L  E  M  G  T  P  G  Q  E  T  L  A  T  L  E  F  G  V  H  L  Q  F  P  L  K  V  E  E  M  F  L  T  K  V  E  I  L  V  M  G  V  M  I  V  Y  M  G  *  L  E  A  M  E  E  M  L  H  Q  V  G  L  L  P  H  H  I  L  H  L  M  V  A  M  M  V  L  *  L  I  F  T  V  V  V  W  D  I  V  I  P  L  G  A  R  Q  I  L  S  E  M  D  L  V  Q  L  V  M  D  S  A  M  H  P  Q  T  C  H  L  K  I  L  L  V  M  L  A  V  M  V  L  V  K  D  S  Q  T  A  :  G  L  V  A  R  S  I  L  A  S  K  G  V  T  L  G  E  T  L  V  *  N  L  N  H  E  F  C  V  L  L  *  L  Y  E  V  E  V  L  K  N  W  I  S  F  C  R  A  N  W  S  C  L  F  *  R  S  R  D  R  S  L  Q  D  F  V  L  K  G  F  L  F  W  V  Y  V  F  R  S  S  P  F  L  F  S  L  S  E  V  *  N  Q  I  A  A  Y  S  Q  K  C  I  V  H  L  W  *  G  N  D  T  Y  K  N  N  I  D  R  K  F  C  V  K  S  L  E  L  N  V  F  C  C  N  V  A  D  S  R  L  V  M  C  L  F  C  S  F  P  *  M  G  F  S  F  F  F  I  W  M  *  G  R  L  L  I  *  C  D  T  F  *  G  Y  P  S  R  V  S  *  *  I  I  Y  C  I  L  M   </first_frame>
            <second_frame>  L  C  S  S  W  K  W  E  H  R  G  R  K  L  *  Q  H  W  S  L  G  F  I  F  N  F  P  S  R  *  R  K  C  F  *  P  K  W  K  S  W  L  W  G  *  *  *  F  I  W  V  D  W  R  L  W  K  K  C  Y  I  K  W  G  S  Y  L  I  I  S  C  I  *  W  *  L  *  W  S  F  S  *  F  L  Q  W  W  F  G  I  *  *  F  H  L  A  L  G  K  F  *  A  R  W  I  W  F  N  W  L  W  T  R  Q  C  T  L  R  H  A  T  *  K  F  C  *  L  C  W  Q  L  W  C  W  *  K  T  V  K  Q  R :   D  W  W  L  G  A  Y  W  Q  A  R  V  L  H  *  V  K  L  W  C  R  I  *  I  M  N  F  A  Y  F  Y  S  Y  M  K  L  R  C  *  R  I  G  Y  P  F  V  G  L  T  G  V  A  C  F  E  G  L  E  I  E  V  Y  K  I  L  C  L  R  V  F  C  F  G  F  M  S  L  G  V  P  P  F  C  F  P  *  V  R  C  K  I  R  L  R  H  I  V  R  N  V  S  C  I  S  G  E  A  T  I  H  T  K  T  T  *  T  E  S  F  A  *  N  L  *  S  *  M  F  F  A  V  T  L  Q  I  L  V  W  *  C  V  C  S  V  V  S  L  K  W  D  F  P  F  F  S  F  G  C  K  G  G  C  *  F  S  V  I  H  F  R  D  T  H  L  G  S  P  N  E  *  F  T  A  Y  *  C  </second_frame>
            <third_frame>   F  A  V  A  G  N  G  N  T  G  A  G  N  F  S  N  T  G  V  W  G  S  S  S  I  S  P  Q  G  R  G  N  V  S  N  Q  S  G  N  L  G  Y  G  G  D  D  S  L  Y  G  L  T  G  G  Y  G  R  N  V  T  S  S  G  A  P  T  S  S  Y  P  A  S  N  G  S  Y  D  G  P  L  A  D  F  Y  S  G  G  L  G  Y  S  D  S  T  W  R  S  A  N  S  E  R  D  G  S  G  S  I  G  Y  G  L  G  N  A  P  S  D  M  P  P  K  N  S  A  S  Y  V  G  S  Y  G  V  G  K  R  Q  S  N  S   : G  I  G  G  *  E  H  I  G  K  Q  G  C  Y  I  R  *  N  F  G  V  E  F  E  S  *  I  L  R  T  S  I  A  I  *  S  *  G  V  K  E  L  D  I  L  L  *  G  *  L  E  L  L  V  L  K  V  *  R  *  K  F  T  R  F  C  A  *  G  F  F  V  L  G  L  C  L  *  E  F  P  L  F  V  F  L  E  *  G  V  K  S  D  C  G  I  *  S  E  M  Y  R  A  S  L  V  R  Q  R  Y  I  Q  K  Q  H  R  Q  K  V  L  R  K  I  F  R  V  K  C  F  L  L  *  R  C  R  F  S  S  G  N  V  F  V  L  *  F  P  L  N  G  I  F  L  F  F  H  L  D  V  R  E  V  V  D  L  V  *  Y  I  L  G  I  P  I  *  G  L  L  M  N  N  L  L  H  I  D  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47191" stop="46771"/>
                    <exon start="37708" stop="37695"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAVAGNGNTGAGNFSNTGVWGSSSISPQGRGNVSNQSGNLGYGGDDSLYGLTGGYGRNVTSSGAPTSSYPASNGSYDGPLADFYSGGLGYSDSTWRSANSERDGSGSIGYGLGNAPSDMPPKNSASYVGSYGVGKRQSNSGIGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39746" e_stop="39031"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="39746" e_stop="39031" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39746" stop="39031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330706" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCTCAAGAAAAAAGTTTTACAAAACAGGTTTGAGGAAAAAAAAGCCTGAGATGAAAATGTCCAAGAAAAGAAAAACACTTGAATAAGAGAATTCCATCTTTTTGCTCATACCATAGTACCATACCAGTGAATCTGGTTGCAGCATTTTATTGAGCATTTAGCAACAAAGTGCTGTAGAAGTCTTTATAGGAAGACACTTTAACAACAACAAGGGTAGGATGTACGCAGACTTACCTCTACCTTTGTGGGGTAGAGAGGTTGTTTCACATAGACCCTCGGCTCAAGAAAAAAGTTTTACAAAACAGGTTTGAGGAAAAAAAGCCTGAGATGAAAATATCTAAGAAAAGAAAAACACTTGAATAAGAGAATTCCATCCTTTTCCTCATACCGTACCAGTGAATCTGGTTGCACATGGAGAATCTACACTTCATCCATCTTCTTCGGCAGCACAGCAATGCTGTCTACTTACCGTTCTAACCTCAAACAAATTCCATGCCATTGGCAATAAATCAGGGAATTGCTCTTTAAGAGGACATCCTGCCAAAAGAATATTCTTTTTCCTTTCCTACTTTGAAACAAGACTTTTCAGAGAATTCATCCTCGTAGATTTCTTATAAATCTCCATTTTCCAACCTCATTGGAGCCATTACCTGTCGATTAAGCACCAAGACTCTGGAGCTTAGCTTGCTTGAATTACTTCCGACAAATCTCTT</gDNA_template>
            <first_frame> S  A  Q  E  K  S  F  T  K  Q  V  *  G  K  K  S  L  R  *  K  C  P  R  K  E  K  H  L  N  K  R  I  P  S  F  C  S  Y  H  S  T  I  P  V  N  L  V  A  A  F  Y  *  A  F  S  N  K  V  L  *  K  S  L  *  E  D  T  L  T  T  T  R  V  G  C  T  Q  T  Y  L  Y  L  C  G  V  E  R  L  F  H  I  D  P  R  L  K  K  K  V  L  Q  N  R  F  E  E  K  K  P  E  M  K  I  S  K  K  R  K  T  L  E  *  E  N  S  I  L  F  L  I  P  Y  Q  *  I  W  L  H  M  E  N  L  H  F  I  H  L  L  R  Q  H  S  N  A  V  Y  L  P  F  *  P  Q  T  N  S  M  P  L  A  I  N  Q  G  I  A  L  *  E  D  I  L  P  K  E  Y  S  F  S  F  P  T  L  K  Q  D  F  S  E  N  S  S  S  *  I  S  Y  K  S  P  F  S  N  L  I  G  A  I  T  C  R  L  S  T  K  T  L  E  L  S  L  L  E  L  L  P  T  N  L   </first_frame>
            <second_frame>  Q  L  K  K  K  V  L  Q  N  R  F  E  E  K  K  A  *  D  E  N  V  Q  E  K  K  N  T  *  I  R  E  F  H  L  F  A  H  T  I  V  P  Y  Q  *  I  W  L  Q  H  F  I  E  H  L  A  T  K  C  C  R  S  L  Y  R  K  T  L  *  Q  Q  Q  G  *  D  V  R  R  L  T  S  T  F  V  G  *  R  G  C  F  T  *  T  L  G  S  R  K  K  F  Y  K  T  G  L  R  K  K  S  L  R  *  K  Y  L  R  K  E  K  H  L  N  K  R  I  P  S  F  S  S  Y  R  T  S  E  S  G  C  T  W  R  I  Y  T  S  S  I  F  F  G  S  T  A  M  L  S  T  Y  R  S  N  L  K  Q  I  P  C  H  W  Q  *  I  R  E  L  L  F  K  R  T  S  C  Q  K  N  I  L  F  P  F  L  L  *  N  K  T  F  Q  R  I  H  P  R  R  F  L  I  N  L  H  F  P  T  S  L  E  P  L  P  V  D  *  A  P  R  L  W  S  L  A  C  L  N  Y  F  R  Q  I  S  </second_frame>
            <third_frame>   S  S  R  K  K  F  Y  K  T  G  L  R  K  K  K  P  E  M  K  M  S  K  K  R  K  T  L  E  *  E  N  S  I  F  L  L  I  P  *  Y  H  T  S  E  S  G  C  S  I  L  L  S  I  *  Q  Q  S  A  V  E  V  F  I  G  R  H  F  N  N  N  K  G  R  M  Y  A  D  L  P  L  P  L  W  G  R  E  V  V  S  H  R  P  S  A  Q  E  K  S  F  T  K  Q  V  *  G  K  K  A  *  D  E  N  I  *  E  K  K  N  T  *  I  R  E  F  H  P  F  P  H  T  V  P  V  N  L  V  A  H  G  E  S  T  L  H  P  S  S  S  A  A  Q  Q  C  C  L  L  T  V  L  T  S  N  K  F  H  A  I  G  N  K  S  G  N  C  S  L  R  G  H  P  A  K  R  I  F  F  F  L  S  Y  F  E  T  R  L  F  R  E  F  I  L  V  D  F  L  *  I  S  I  F  Q  P  H  W  S  H  Y  L  S  I  K  H  Q  D  S  G  A  *  L  A  *  I  T  S  D  K  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39384" stop="39127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IREFHPFPHTVPVNLVAHGESTLHPSSSAAQQCCLLTVLTSNKFHAIGNKSGNCSLRGHPAKRIFFFLSYFETRLFREFILVDFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="49292" PGL_stop="47856"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49292" e_stop="48946"/>
            <exon e_start="48481" e_stop="48256"/>
            <exon e_start="47953" e_stop="47856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.041" acc_prob="0.968" e_score="0.994"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="49292" e_stop="48946" e_length="347"/>
          </exon>
          <intron i_serial="1" don_prob="0.041" acc_prob="0.968">
            <gDNA_intron_boundary i_start="48945" i_stop="48482" i_length="464"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48481" e_stop="48256" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48255" i_stop="47954" i_length="302"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="47953" e_stop="47856" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49292" stop="48946"/>
              <exon start="48481" stop="48256"/>
              <exon start="47953" stop="47856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320947" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTCTTTGTTTTTTCCTTTCTTCTTCACTACCACATATTCTCTCTTCTTACCAAAAAAAAAAAAAAGATAAAAAAGAATTAATATAAAATCAAAAAGATTAAATTTTTATATAAAATTAAAGGCTTAGAAACAATCTTTTCTTAGCTGAACAAATTTTGTATTCAAAATTGTTACATATTTGATTGGAAAGATTGGAAAGAGAAGAGAAAAGAGTGGGGACACCAAAGTTGGGGGGCAGAATATAGAGAAGGAAGAACAACGCCCTTCGTTCTACTATTGCCCCCTCTTTAGATCTTACTGTTTTCTCATCTGGGTATTCTTCAATCGGTTGATTCTTGATTTGG : GAAAATGCAATCTGATCTTGGGAAGTTATTCATTGGTGGAATTTCATGGGACACAAATGAAGAGCGTCTGAAGGAGTATTTTAGTACTTATGGGGAGGTTTTAGAGGCTGTAATTATGAAGGATAGGACTACTGGACGTGCCCGTGGTTTTGGTTTTATTGTCTTTGCTGATCCTGCTGTTGCTGATAGGGTAATCAAGGAGAAACACAACATTGATGGCAGGATG : GTTGAAGCAAAGAAGGCTGTTCCTAGGGATGACCAGAGCACAATAAGTAGAAGCAGTCCTAGCATTCAGGGTTCTCCTGGTCCAGGACGTACAAGAAA</gDNA_template>
            <first_frame> N  F  F  V  F  S  F  L  L  H  Y  H  I  F  S  L  L  T  K  K  K  K  K  I  K  K  N  *  Y  K  I  K  K  I  K  F  L  Y  K  I  K  G  L  E  T  I  F  S  *  L  N  K  F  C  I  Q  N  C  Y  I  F  D  W  K  D  W  K  E  K  R  K  E  W  G  H  Q  S  W  G  A  E  Y  R  E  G  R  T  T  P  F  V  L  L  L  P  P  L  *  I  L  L  F  S  H  L  G  I  L  Q  S  V  D  S  *  F  G :   K  M  Q  S  D  L  G  K  L  F  I  G  G  I  S  W  D  T  N  E  E  R  L  K  E  Y  F  S  T  Y  G  E  V  L  E  A  V  I  M  K  D  R  T  T  G  R  A  R  G  F  G  F  I  V  F  A  D  P  A  V  A  D  R  V  I  K  E  K  H  N  I  D  G  R  M  :  V  E  A  K  K  A  V  P  R  D  D  Q  S  T  I  S  R  S  S  P  S  I  Q  G  S  P  G  P  G  R  T  R   </first_frame>
            <second_frame>  I  S  L  F  F  P  F  F  F  T  T  T  Y  S  L  F  L  P  K  K  K  K  R  *  K  R  I  N  I  K  S  K  R  L  N  F  Y  I  K  L  K  A  *  K  Q  S  F  L  S  *  T  N  F  V  F  K  I  V  T  Y  L  I  G  K  I  G  K  R  R  E  K  S  G  D  T  K  V  G  G  Q  N  I  E  K  E  E  Q  R  P  S  F  Y  Y  C  P  L  F  R  S  Y  C  F  L  I  W  V  F  F  N  R  L  I  L  D  L   : G  K  C  N  L  I  L  G  S  Y  S  L  V  E  F  H  G  T  Q  M  K  S  V  *  R  S  I  L  V  L  M  G  R  F  *  R  L  *  L  *  R  I  G  L  L  D  V  P  V  V  L  V  L  L  S  L  L  I  L  L  L  L  I  G  *  S  R  R  N  T  T  L  M  A  G  W :   L  K  Q  R  R  L  F  L  G  M  T  R  A  Q  *  V  E  A  V  L  A  F  R  V  L  L  V  Q  D  V  Q  E  </second_frame>
            <third_frame>   F  L  C  F  F  L  S  S  S  L  P  H  I  L  S  S  Y  Q  K  K  K  K  D  K  K  E  L  I  *  N  Q  K  D  *  I  F  I  *  N  *  R  L  R  N  N  L  F  L  A  E  Q  I  L  Y  S  K  L  L  H  I  *  L  E  R  L  E  R  E  E  K  R  V  G  T  P  K  L  G  G  R  I  *  R  R  K  N  N  A  L  R  S  T  I  A  P  S  L  D  L  T  V  F  S  S  G  Y  S  S  I  G  *  F  L  I  W  :  E  N  A  I  *  S  W  E  V  I  H  W  W  N  F  M  G  H  K  *  R  A  S  E  G  V  F  *  Y  L  W  G  G  F  R  G  C  N  Y  E  G  *  D  Y  W  T  C  P  W  F  W  F  Y  C  L  C  *  S  C  C  C  *  *  G  N  Q  G  E  T  Q  H  *  W  Q  D   : G  *  S  K  E  G  C  S  *  G  *  P  E  H  N  K  *  K  Q  S  *  H  S  G  F  S  W  S  R  T  Y  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48950" stop="48946"/>
                    <exon start="48481" stop="48256"/>
                    <exon start="47953" stop="47858"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGKMQSDLGKLFIGGISWDTNEERLKEYFSTYGEVLEAVIMKDRTTGRARGFGFIVFADPAVADRVIKEKHNIDGRMVEAKKAVPRDDQSTISRSSPSIQGSPGPGRTR</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49141" stop="48946"/>
                    <exon start="48481" stop="48411"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNFVFKIVTYLIGKIGKRREKSGDTKVGGQNIEKEEQRPSFYYCPLFRSYCFLIWVFFNRLILDLGKCNLILGSYSLVEFHGTQMKSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="54232" PGL_stop="58522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54232" e_stop="54339"/>
            <exon e_start="55001" e_stop="55378"/>
            <exon e_start="57294" e_stop="57405"/>
            <exon e_start="57483" e_stop="57542"/>
            <exon e_start="57839" e_stop="57943"/>
            <exon e_start="58287" e_stop="58522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.755" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54232" e_stop="54339" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54340" i_stop="55000" i_length="661"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55001" e_stop="55378" e_length="378"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="55379" i_stop="57293" i_length="1915"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57294" e_stop="57405" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="57406" i_stop="57482" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57483" e_stop="57542" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="57543" i_stop="57838" i_length="296"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57839" e_stop="57943" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.755" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57944" i_stop="58286" i_length="343"/>
          </intron>
          <exon e_serial="6" e_score="0.958">
            <gDNA_exon_boundary e_start="58287" e_stop="58522" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54232" stop="54339"/>
              <exon start="55001" stop="55378"/>
              <exon start="57294" stop="57405"/>
              <exon start="57483" stop="57542"/>
              <exon start="57839" stop="57943"/>
              <exon start="58287" stop="58522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACCCTACAAGGCGCCAAATAAAAAAATGGTACTTTTCAAAAGAGGCGCGGAAAATAGGTTTTTAGGTACTCAGTGATATGAGCAATTTCGCACTCACCACAACACT : CAGAAGTTTTGTACCAAAGACAATTTCGACCTTTCCTAGAAAATTTGGAACTTGGGCAGCTTTATTTTCATTGAAGTCTAGCTTGGATTTGAAGTTACGTTTTAAGCCTTCGAGACTTATTCATATGGAGAACAAAGAGAGCAGCAGCTCCAGAGGTGCTTTAATTGTTTTAGAAGGGTTGGATCGCTGTGGGAAGACATCGCAATCTGGCAGACTGTACAAGTATTTGGATGAGCAGGGACATTCAGTTGAGTCGTGGAGATTTCCTGACAGAAATACAGGCGTTGGGCAAATGATTTCTTCTTATCTTGCAAACAAATCACAGTTGGATGACCATGCAATCCATCTTCTCTTCAGTGCAAATCGTTGGGAAAAGAG : ATCATTAATGGAGGAGAAGCTGAAGAGTGGAACGACTCTCATCGTTGACCGCTATTCTTATTCTGGGGTGGCATTTTCCTCTGCCAAGGGACTTGATATTGAATGGTGTAAG : GCTCCAGAAATAGGGTTGTTAGCTCCAGATCTGGTTGTATATCTCGACATATCTCCAGAG : AAAGCTGCTGAAAGAGGAGGTTATGGAGATGAAAGATATGAGCAGCTTGAGTTTCAGAAAAAGGTTGCTGGATCTTATTTGTCTCTTCGTGATTCCTCGTGGAAG : GTTATCGATGCAACCCTTTCGATTGAAGATGTAGAGAAGAAGCTCAGAGAAGTTGTACTTGACTGTATGATTACGTGCCACAAAGGGAAACCATTGTCTCAGTTATGGCCATGTTAGGTCTAGTGAATGTCTGCATGAATGATATGTATACCTTCTTTATTACACTGTATTGTTTTAATGTATTTTGCTATATTTAATCTTCTAAACGATATCCTTGGAAGTGTGGAGTGTTTCAT</gDNA_template>
            <first_frame> E  P  Y  K  A  P  N  K  K  M  V  L  F  K  R  G  A  E  N  R  F  L  G  T  Q  *  Y  E  Q  F  R  T  H  H  N  T  :  Q  K  F  C  T  K  D  N  F  D  L  S  *  K  I  W  N  L  G  S  F  I  F  I  E  V  *  L  G  F  E  V  T  F  *  A  F  E  T  Y  S  Y  G  E  Q  R  E  Q  Q  L  Q  R  C  F  N  C  F  R  R  V  G  S  L  W  E  D  I  A  I  W  Q  T  V  Q  V  F  G  *  A  G  T  F  S  *  V  V  E  I  S  *  Q  K  Y  R  R  W  A  N  D  F  F  L  S  C  K  Q  I  T  V  G  *  P  C  N  P  S  S  L  Q  C  K  S  L  G  K  E  :  I  I  N  G  G  E  A  E  E  W  N  D  S  H  R  *  P  L  F  L  F  W  G  G  I  F  L  C  Q  G  T  *  Y  *  M  V  *   : G  S  R  N  R  V  V  S  S  R  S  G  C  I  S  R  H  I  S  R   : E  S  C  *  K  R  R  L  W  R  *  K  I  *  A  A  *  V  S  E  K  G  C  W  I  L  F  V  S  S  *  F  L  V  E   : G  Y  R  C  N  P  F  D  *  R  C  R  E  E  A  Q  R  S  C  T  *  L  Y  D  Y  V  P  Q  R  E  T  I  V  S  V  M  A  M  L  G  L  V  N  V  C  M  N  D  M  Y  T  F  F  I  T  L  Y  C  F  N  V  F  C  Y  I  *  S  S  K  R  Y  P  W  K  C  G  V  F  H </first_frame>
            <second_frame>  N  P  T  R  R  Q  I  K  K  W  Y  F  S  K  E  A  R  K  I  G  F  *  V  L  S  D  M  S  N  F  A  L  T  T  T  L :   R  S  F  V  P  K  T  I  S  T  F  P  R  K  F  G  T  W  A  A  L  F  S  L  K  S  S  L  D  L  K  L  R  F  K  P  S  R  L  I  H  M  E  N  K  E  S  S  S  S  R  G  A  L  I  V  L  E  G  L  D  R  C  G  K  T  S  Q  S  G  R  L  Y  K  Y  L  D  E  Q  G  H  S  V  E  S  W  R  F  P  D  R  N  T  G  V  G  Q  M  I  S  S  Y  L  A  N  K  S  Q  L  D  D  H  A  I  H  L  L  F  S  A  N  R  W  E  K  R :   S  L  M  E  E  K  L  K  S  G  T  T  L  I  V  D  R  Y  S  Y  S  G  V  A  F  S  S  A  K  G  L  D  I  E  W  C  K  :  A  P  E  I  G  L  L  A  P  D  L  V  V  Y  L  D  I  S  P  E  :  K  A  A  E  R  G  G  Y  G  D  E  R  Y  E  Q  L  E  F  Q  K  K  V  A  G  S  Y  L  S  L  R  D  S  S  W  K  :  V  I  D  A  T  L  S  I  E  D  V  E  K  K  L  R  E  V  V  L  D  C  M  I  T  C  H  K  G  K  P  L  S  Q  L  W  P  C  *  V  *  *  M  S  A  *  M  I  C  I  P  S  L  L  H  C  I  V  L  M  Y  F  A  I  F  N  L  L  N  D  I  L  G  S  V  E  C  F   </second_frame>
            <third_frame>   T  L  Q  G  A  K  *  K  N  G  T  F  Q  K  R  R  G  K  *  V  F  R  Y  S  V  I  *  A  I  S  H  S  P  Q  H   : S  E  V  L  Y  Q  R  Q  F  R  P  F  L  E  N  L  E  L  G  Q  L  Y  F  H  *  S  L  A  W  I  *  S  Y  V  L  S  L  R  D  L  F  I  W  R  T  K  R  A  A  A  P  E  V  L  *  L  F  *  K  G  W  I  A  V  G  R  H  R  N  L  A  D  C  T  S  I  W  M  S  R  D  I  Q  L  S  R  G  D  F  L  T  E  I  Q  A  L  G  K  *  F  L  L  I  L  Q  T  N  H  S  W  M  T  M  Q  S  I  F  S  S  V  Q  I  V  G  K  R   : D  H  *  W  R  R  S  *  R  V  E  R  L  S  S  L  T  A  I  L  I  L  G  W  H  F  P  L  P  R  D  L  I  L  N  G  V  R :   L  Q  K  *  G  C  *  L  Q  I  W  L  Y  I  S  T  Y  L  Q  R :   K  L  L  K  E  E  V  M  E  M  K  D  M  S  S  L  S  F  R  K  R  L  L  D  L  I  C  L  F  V  I  P  R  G  R :   L  S  M  Q  P  F  R  L  K  M  *  R  R  S  S  E  K  L  Y  L  T  V  *  L  R  A  T  K  G  N  H  C  L  S  Y  G  H  V  R  S  S  E  C  L  H  E  *  Y  V  Y  L  L  Y  Y  T  V  L  F  *  C  I  L  L  Y  L  I  F  *  T  I  S  L  E  V  W  S  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54299" stop="54339"/>
                    <exon start="55001" stop="55378"/>
                    <exon start="57294" stop="57405"/>
                    <exon start="57483" stop="57542"/>
                    <exon start="57839" stop="57943"/>
                    <exon start="58287" stop="58403"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLSDMSNFALTTTLRSFVPKTISTFPRKFGTWAALFSLKSSLDLKLRFKPSRLIHMENKESSSSRGALIVLEGLDRCGKTSQSGRLYKYLDEQGHSVESWRFPDRNTGVGQMISSYLANKSQLDDHAIHLLFSANRWEKRSLMEEKLKSGTTLIVDRYSYSGVAFSSAKGLDIEWCKAPEIGLLAPDLVVYLDISPEKAAERGGYGDERYEQLEFQKKVAGSYLSLRDSSWKVIDATLSIEDVEKKLREVVLDCMITCHKGKPLSQLWPC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="60837" PGL_stop="60165"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60837" e_stop="60165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60837" e_stop="60165" e_length="673"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60837" stop="60165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACACTAAGCTTCTTGTTAAAAGATTCAGCAATGCAAAGGTCCGAATTCTCAAGGAAGGAATATGAATCCACGAGCTTCAGAATCCAAAACCTTGAAGAAGAATTGATGTCCTTGAAGAAAACGCTTCAACTGCAGCACATATCTAAGCAAACAGAAACCATCTCCAAGAAAGTTGAACCAGTTTCTGCAAATTTTCAAAGCTTGAAACCATATGGACTAGAGGGAAGAACGCCAAGCAATAAGAGTGTTGGCCAAGTGACTAGTTGCATTGGTTCTGTGAATTTCTCTTCCCAAAAACGATATGCTAATAGGTTACTTAAGATTTTCCGGAGGATATCTTTGTTTGGCAGAGGAAAATCAAGAAAAAAGCAAGGTGGAAATGGCCTTAGGCCAAAGATATTGAACTTTTAAACTACAATGACATTGCTGATCAAGGACCACAAAATATGAGAGTATATTATTTACCAAATTTTGATGTAAGAAAGTTCATGTAAATAGCAAGGGAATCAATAAGAACATGTCAGTGGACATTGATATTATTATAATGAATCATAAGCTGTTGTACTTTGTAGAACATATGCAATAGCCAAACTGTTTTTACAATGCCTGCATTTGCTTAGATATACCACAGAATGACATATTTTGCTCCACAAAAGGAGCCTCTTTTCCA</gDNA_template>
            <first_frame> K  T  L  S  F  L  L  K  D  S  A  M  Q  R  S  E  F  S  R  K  E  Y  E  S  T  S  F  R  I  Q  N  L  E  E  E  L  M  S  L  K  K  T  L  Q  L  Q  H  I  S  K  Q  T  E  T  I  S  K  K  V  E  P  V  S  A  N  F  Q  S  L  K  P  Y  G  L  E  G  R  T  P  S  N  K  S  V  G  Q  V  T  S  C  I  G  S  V  N  F  S  S  Q  K  R  Y  A  N  R  L  L  K  I  F  R  R  I  S  L  F  G  R  G  K  S  R  K  K  Q  G  G  N  G  L  R  P  K  I  L  N  F  *  T  T  M  T  L  L  I  K  D  H  K  I  *  E  Y  I  I  Y  Q  I  L  M  *  E  S  S  C  K  *  Q  G  N  Q  *  E  H  V  S  G  H  *  Y  Y  Y  N  E  S  *  A  V  V  L  C  R  T  Y  A  I  A  K  L  F  L  Q  C  L  H  L  L  R  Y  T  T  E  *  H  I  L  L  H  K  R  S  L  F  S  </first_frame>
            <second_frame>  K  H  *  A  S  C  *  K  I  Q  Q  C  K  G  P  N  S  Q  G  R  N  M  N  P  R  A  S  E  S  K  T  L  K  K  N  *  C  P  *  R  K  R  F  N  C  S  T  Y  L  S  K  Q  K  P  S  P  R  K  L  N  Q  F  L  Q  I  F  K  A  *  N  H  M  D  *  R  E  E  R  Q  A  I  R  V  L  A  K  *  L  V  A  L  V  L  *  I  S  L  P  K  N  D  M  L  I  G  Y  L  R  F  S  G  G  Y  L  C  L  A  E  E  N  Q  E  K  S  K  V  E  M  A  L  G  Q  R  Y  *  T  F  K  L  Q  *  H  C  *  S  R  T  T  K  Y  E  S  I  L  F  T  K  F  *  C  K  K  V  H  V  N  S  K  G  I  N  K  N  M  S  V  D  I  D  I  I  I  M  N  H  K  L  L  Y  F  V  E  H  M  Q  *  P  N  C  F  Y  N  A  C  I  C  L  D  I  P  Q  N  D  I  F  C  S  T  K  G  A  S  F  P </second_frame>
            <third_frame>   N  T  K  L  L  V  K  R  F  S  N  A  K  V  R  I  L  K  E  G  I  *  I  H  E  L  Q  N  P  K  P  *  R  R  I  D  V  L  E  E  N  A  S  T  A  A  H  I  *  A  N  R  N  H  L  Q  E  S  *  T  S  F  C  K  F  S  K  L  E  T  I  W  T  R  G  K  N  A  K  Q  *  E  C  W  P  S  D  *  L  H  W  F  C  E  F  L  F  P  K  T  I  C  *  *  V  T  *  D  F  P  E  D  I  F  V  W  Q  R  K  I  K  K  K  A  R  W  K  W  P  *  A  K  D  I  E  L  L  N  Y  N  D  I  A  D  Q  G  P  Q  N  M  R  V  Y  Y  L  P  N  F  D  V  R  K  F  M  *  I  A  R  E  S  I  R  T  C  Q  W  T  L  I  L  L  *  *  I  I  S  C  C  T  L  *  N  I  C  N  S  Q  T  V  F  T  M  P  A  F  A  *  I  Y  H  R  M  T  Y  F  A  P  Q  K  E  P  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60837" stop="60424"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTLSFLLKDSAMQRSEFSRKEYESTSFRIQNLEEELMSLKKTLQLQHISKQTETISKKVEPVSANFQSLKPYGLEGRTPSNKSVGQVTSCIGSVNFSSQKRYANRLLKIFRRISLFGRGKSRKKQGGNGLRPKILNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="63260" PGL_stop="62154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63260" e_stop="63099"/>
            <exon e_start="62631" e_stop="62562"/>
            <exon e_start="62456" e_stop="62154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63260" e_stop="63099" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.866">
            <gDNA_intron_boundary i_start="63098" i_stop="62632" i_length="467"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62631" e_stop="62562" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62561" i_stop="62457" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62456" e_stop="62154" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63260" stop="63099"/>
              <exon start="62631" stop="62562"/>
              <exon start="62456" stop="62154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341210" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATTAACTCCATCTCTCATTAAAAACTTCCTTACAACCACAAGTCTTATTATTGGCTGAATGCATGGGTACTTCTTCAAGTCCAAAAGACTCTTCAATTCTTTATAGTCCACTTTCATCTCCTAATGTTGGTGCTTTGCTTAAAATCAAGATCATTTCATG : GAGTCAAGAAACTGGTTTACCTGTCACAATTCGAGTTCGGATAGCTGACAGAACCTTTAACTTGCATAAG : CACCCCTTGTTCTCGAAAAGCGGATACTTCAGAAGACAACTGAATGAATCAAATGAGGCTGAATTACCAAGTAACTTCCCTGGAGGAGCAGAGACTTTCGAAATGATGGCACTCTTCATCTATGGATCCTCCACGTTAGTTGACCCTTTCAATGTTGCAGCGCTAAGATGTGCAGCAGAGTACCTTGAAATGACAGAAGAGTACATCTCTGGCAATCTTTGTGAGCGTTTCGACATATATTTGAACCAGGTTGTGCTGCAAAGCTGGGATGATACTCTGATAGTACTCCAAAAATGCCAAATG</gDNA_template>
            <first_frame> T  L  T  P  S  L  I  K  N  F  L  T  T  T  S  L  I  I  G  *  M  H  G  Y  F  F  K  S  K  R  L  F  N  S  L  *  S  T  F  I  S  *  C  W  C  F  A  *  N  Q  D  H  F  M  :  E  S  R  N  W  F  T  C  H  N  S  S  S  D  S  *  Q  N  L  *  L  A  *   : A  P  L  V  L  E  K  R  I  L  Q  K  T  T  E  *  I  K  *  G  *  I  T  K  *  L  P  W  R  S  R  D  F  R  N  D  G  T  L  H  L  W  I  L  H  V  S  *  P  F  Q  C  C  S  A  K  M  C  S  R  V  P  *  N  D  R  R  V  H  L  W  Q  S  L  *  A  F  R  H  I  F  E  P  G  C  A  A  K  L  G  *  Y  S  D  S  T  P  K  M  P  N  </first_frame>
            <second_frame>  H  *  L  H  L  S  L  K  T  S  L  Q  P  Q  V  L  L  L  A  E  C  M  G  T  S  S  S  P  K  D  S  S  I  L  Y  S  P  L  S  S  P  N  V  G  A  L  L  K  I  K  I  I  S  W :   S  Q  E  T  G  L  P  V  T  I  R  V  R  I  A  D  R  T  F  N  L  H  K  :  H  P  L  F  S  K  S  G  Y  F  R  R  Q  L  N  E  S  N  E  A  E  L  P  S  N  F  P  G  G  A  E  T  F  E  M  M  A  L  F  I  Y  G  S  S  T  L  V  D  P  F  N  V  A  A  L  R  C  A  A  E  Y  L  E  M  T  E  E  Y  I  S  G  N  L  C  E  R  F  D  I  Y  L  N  Q  V  V  L  Q  S  W  D  D  T  L  I  V  L  Q  K  C  Q  M </second_frame>
            <third_frame>   I  N  S  I  S  H  *  K  L  P  Y  N  H  K  S  Y  Y  W  L  N  A  W  V  L  L  Q  V  Q  K  T  L  Q  F  F  I  V  H  F  H  L  L  M  L  V  L  C  L  K  S  R  S  F  H   : G  V  K  K  L  V  Y  L  S  Q  F  E  F  G  *  L  T  E  P  L  T  C  I  S :   T  P  C  S  R  K  A  D  T  S  E  D  N  *  M  N  Q  M  R  L  N  Y  Q  V  T  S  L  E  E  Q  R  L  S  K  *  W  H  S  S  S  M  D  P  P  R  *  L  T  L  S  M  L  Q  R  *  D  V  Q  Q  S  T  L  K  *  Q  K  S  T  S  L  A  I  F  V  S  V  S  T  Y  I  *  T  R  L  C  C  K  A  G  M  I  L  *  *  Y  S  K  N  A  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63253" stop="63099"/>
                    <exon start="62631" stop="62562"/>
                    <exon start="62456" stop="62154"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHLSLKTSLQPQVLLLAECMGTSSSPKDSSILYSPLSSPNVGALLKIKIISWSQETGLPVTIRVRIADRTFNLHKHPLFSKSGYFRRQLNESNEAELPSNFPGGAETFEMMALFIYGSSTLVDPFNVAALRCAAEYLEMTEEYISGNLCERFDIYLNQVVLQSWDDTLIVLQKCQM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="74178" PGL_stop="73646"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74178" e_stop="73646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="74178" e_stop="73646" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74178" stop="73646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346256" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGCCACCTATCAACGCCGTCTCCTTCGCCGTCATTGGCCGAGCAAAACCCTAATTCAACCCTCCACAACAGTAATTCTTCTAAAGCACCAACCAATAAGCGCCGATCGAAAGTACTCGATGAGGACACCTACGTGGCTGCAATAGAGAAAATAATCGAGCGTGATTTCTTCCCAGATATCCCCAAGCTTCGCGATCGTCTTGATTGGCTTGAAGCGATTCGTACAGGCGATCCGGTTCAAATTCGTGATGCTCAGTTGAAAATTATTGAACGAAGGGGAGGTAGAGCTGTTGGATCGAATACTGAAGGTAAATTACGAACCCCTGGTTCGACTTTCTTTCGGAATTCGACTACTCCGTTTGAAGATCCTTATAAAACTCCCACTCCTAGTGTAGTTAATGGTTATAATTGGTCTAGTGTTGGGGATACTGCGGAAGGTGGTGGTGGTGAGGTGGATGGGTCTTTGAGTTTAGATGAGTTTTTTAGGAGGTATACGAGTGAGGATAATGAGAGTTTTTCAAAGCTTATTGAGA</gDNA_template>
            <first_frame> A  P  P  I  N  A  V  S  F  A  V  I  G  R  A  K  P  *  F  N  P  P  Q  Q  *  F  F  *  S  T  N  Q  *  A  P  I  E  S  T  R  *  G  H  L  R  G  C  N  R  E  N  N  R  A  *  F  L  P  R  Y  P  Q  A  S  R  S  S  *  L  A  *  S  D  S  Y  R  R  S  G  S  N  S  *  C  S  V  E  N  Y  *  T  K  G  R  *  S  C  W  I  E  Y  *  R  *  I  T  N  P  W  F  D  F  L  S  E  F  D  Y  S  V  *  R  S  L  *  N  S  H  S  *  C  S  *  W  L  *  L  V  *  C  W  G  Y  C  G  R  W  W  W  *  G  G  W  V  F  E  F  R  *  V  F  *  E  V  Y  E  *  G  *  *  E  F  F  K  A  Y  *   </first_frame>
            <second_frame>  R  H  L  S  T  P  S  P  S  P  S  L  A  E  Q  N  P  N  S  T  L  H  N  S  N  S  S  K  A  P  T  N  K  R  R  S  K  V  L  D  E  D  T  Y  V  A  A  I  E  K  I  I  E  R  D  F  F  P  D  I  P  K  L  R  D  R  L  D  W  L  E  A  I  R  T  G  D  P  V  Q  I  R  D  A  Q  L  K  I  I  E  R  R  G  G  R  A  V  G  S  N  T  E  G  K  L  R  T  P  G  S  T  F  F  R  N  S  T  T  P  F  E  D  P  Y  K  T  P  T  P  S  V  V  N  G  Y  N  W  S  S  V  G  D  T  A  E  G  G  G  G  E  V  D  G  S  L  S  L  D  E  F  F  R  R  Y  T  S  E  D  N  E  S  F  S  K  L  I  E  </second_frame>
            <third_frame>   A  T  Y  Q  R  R  L  L  R  R  H  W  P  S  K  T  L  I  Q  P  S  T  T  V  I  L  L  K  H  Q  P  I  S  A  D  R  K  Y  S  M  R  T  P  T  W  L  Q  *  R  K  *  S  S  V  I  S  S  Q  I  S  P  S  F  A  I  V  L  I  G  L  K  R  F  V  Q  A  I  R  F  K  F  V  M  L  S  *  K  L  L  N  E  G  E  V  E  L  L  D  R  I  L  K  V  N  Y  E  P  L  V  R  L  S  F  G  I  R  L  L  R  L  K  I  L  I  K  L  P  L  L  V  *  L  M  V  I  I  G  L  V  L  G  I  L  R  K  V  V  V  V  R  W  M  G  L  *  V  *  M  S  F  L  G  G  I  R  V  R  I  M  R  V  F  Q  S  L  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74177" stop="73647"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHLSTPSPSPSLAEQNPNSTLHNSNSSKAPTNKRRSKVLDEDTYVAAIEKIIERDFFPDIPKLRDRLDWLEAIRTGDPVQIRDAQLKIIERRGGRAVGSNTEGKLRTPGSTFFRNSTTPFEDPYKTPTPSVVNGYNWSSVGDTAEGGGGEVDGSLSLDEFFRRYTSEDNESFSKLIE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="76095" PGL_stop="83684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76095" e_stop="76420"/>
            <exon e_start="77327" e_stop="77421"/>
            <exon e_start="77831" e_stop="77978"/>
            <exon e_start="79607" e_stop="79698"/>
            <exon e_start="79794" e_stop="79890"/>
            <exon e_start="80253" e_stop="80328"/>
            <exon e_start="80431" e_stop="80551"/>
            <exon e_start="82664" e_stop="82780"/>
            <exon e_start="82868" e_stop="82935"/>
            <exon e_start="83358" e_stop="83684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.714" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.089" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.345" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="76095" e_stop="76420" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76421" i_stop="77326" i_length="906"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77327" e_stop="77421" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.714" acc_prob="0.865">
            <gDNA_intron_boundary i_start="77422" i_stop="77830" i_length="409"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77831" e_stop="77978" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77979" i_stop="79606" i_length="1628"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79607" e_stop="79698" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79699" i_stop="79793" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79794" e_stop="79890" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.089" acc_prob="0.952">
            <gDNA_intron_boundary i_start="79891" i_stop="80252" i_length="362"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80253" e_stop="80328" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.921" acc_prob="0.849">
            <gDNA_intron_boundary i_start="80329" i_stop="80430" i_length="102"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="80431" e_stop="80551" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80552" i_stop="82663" i_length="2112"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82664" e_stop="82780" e_length="117"/>
          </exon>
          <intron i_serial="8" don_prob="0.345" acc_prob="0.986">
            <gDNA_intron_boundary i_start="82781" i_stop="82867" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="82868" e_stop="82935" e_length="68"/>
          </exon>
          <intron i_serial="9" don_prob="0.954" acc_prob="0.978">
            <gDNA_intron_boundary i_start="82936" i_stop="83357" i_length="422"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="83358" e_stop="83684" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76095" stop="76420"/>
              <exon start="77327" stop="77421"/>
              <exon start="77831" stop="77978"/>
              <exon start="79607" stop="79698"/>
              <exon start="79794" stop="79890"/>
              <exon start="80253" stop="80328"/>
              <exon start="80431" stop="80551"/>
              <exon start="82664" stop="82780"/>
              <exon start="82868" stop="82935"/>
              <exon start="83358" stop="83684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76129" stop="76420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337113" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACTGAAGCAAACAAAAGCCTCTGGTGCGCATCTCAATTTCTCGATACGCTGAGATCACAGTTACCGAAGATGGCTGAATTTGCCAATTCCAAAAACTACGGAGTCCCAATTTACGGTGCCGGTTGGGTTCCACCGAGCGCTCTCAGATCTGCCGTTGAACCGTCGGTCGATGATGAAAAGGACGACGGAGACAAATCATCGTCATCGGCACCGGGAAACTATGTTGTTCTTGCCGGAGGTGGTGGGGAAGGGAATAGCGGTATTCGTAATGCTCTCATTGTTGCTCAATTCGATTTTGATTCTAATGTGCTCTCTGATGAACCC : GTGGCTAGGTTAGGAACTGGCGGTGATCTGCCTTATAGGATGGCAGTACATCCAGGTGGAGAAGGTCTTATATGCTCATTGCCAAAAAGCTGCAG : ATGGTTTGACTGGGATTTTCAGACAGATGAAAATCGTTCATTGGGTCTGCGATCATCTGAGAAAGTACTTGAGCCATTGGAAGATGTTGGACAACAACTAGCACTAACTTTTAACGATGAAGGTTCTTTACTTGCTGTCGGTGGTGAG : GATGGCAAGTTGAGGGTTTTTAAGTGGCCTAGGATGGAAAATATTCTTGATCAGGCTAATGCTCATGCTTCTGTGAAGGATCTAGACTTCAG : CCCGGATGGAAAATTTCTTGCATCTGTTGGAAGCGGCCCTTGCCGGATTTGGGATGTCTCAAAATCAACCTCTGTAGCTTCTTTGACGAAGGAAAAT : GATGAGATTTTTGGCTATTGTAGATTCGCACCAATTAACGATGAGAATCAGGTTCTGTACATCACCACAATGCGAG : ATCAAGGGGGAAGTATTTCGAAGTGGAGTACTACTACGTGGAGGAGGATAAAATCAAAGCGTGTTGTTCGTGATCCTATTTGTGCCTTCAATATTTCAACCAATGGAAAGCTTCTGGCAAT : AGGAACAATTGAGGGAGATGTTCTGATAGTGTCTTCCAACAATTTTCAAGTGCAAAATGTGGTAAAAAAGGCTCATCTTGGTCTTGTAACAACATTGAAGTTCTCAGAAGATTCGAG : GGCTTTGCTTTCTGCCTCCTTGGATTCAAGAGTGAGAGTGACAATTATAAAGGAAGAGAAGAAAAGTG : GTCTGAGCTTGTGGATCGTCATACTTGTTCTTTTGATTGCAATTGCTGTATATTATGCAGCAAGCAACGGCATTCTTCCATTGGAGCTAAACTCTATATTAAAATGACGAGCTTTATCCCCAAAGAATTTTTATAGGTGAAACAGTATCTGAAACATTTTTGAAGGCCATCTCTGGAACAGTAGGCTTGAATTCGAGATTCGATAAGTTAAAAGACATCTGATGTTTTTAATGTGCTTAAACTGTTAGACAACAGAGAGTTAATATACCTACTTTGTCCTCCATTGTACAAAACAAGTTGTGTAGGTTTATTTCTTTCAATTTGCAA</gDNA_template>
            <first_frame> *  L  K  Q  T  K  A  S  G  A  H  L  N  F  S  I  R  *  D  H  S  Y  R  R  W  L  N  L  P  I  P  K  T  T  E  S  Q  F  T  V  P  V  G  F  H  R  A  L  S  D  L  P  L  N  R  R  S  M  M  K  R  T  T  E  T  N  H  R  H  R  H  R  E  T  M  L  F  L  P  E  V  V  G  K  G  I  A  V  F  V  M  L  S  L  L  L  N  S  I  L  I  L  M  C  S  L  M  N  P :   W  L  G  *  E  L  A  V  I  C  L  I  G  W  Q  Y  I  Q  V  E  K  V  L  Y  A  H  C  Q  K  A  A   : D  G  L  T  G  I  F  R  Q  M  K  I  V  H  W  V  C  D  H  L  R  K  Y  L  S  H  W  K  M  L  D  N  N  *  H  *  L  L  T  M  K  V  L  Y  L  L  S  V  V  R :   M  A  S  *  G  F  L  S  G  L  G  W  K  I  F  L  I  R  L  M  L  M  L  L  *  R  I  *  T  S   : A  R  M  E  N  F  L  H  L  L  E  A  A  L  A  G  F  G  M  S  Q  N  Q  P  L  *  L  L  *  R  R  K  M :   M  R  F  L  A  I  V  D  S  H  Q  L  T  M  R  I  R  F  C  T  S  P  Q  C  E  :  I  K  G  E  V  F  R  S  G  V  L  L  R  G  G  G  *  N  Q  S  V  L  F  V  I  L  F  V  P  S  I  F  Q  P  M  E  S  F  W  Q   : *  E  Q  L  R  E  M  F  *  *  C  L  P  T  I  F  K  C  K  M  W  *  K  R  L  I  L  V  L  *  Q  H  *  S  S  Q  K  I  R   : G  L  C  F  L  P  P  W  I  Q  E  *  E  *  Q  L  *  R  K  R  R  K  V  :  V  *  A  C  G  S  S  Y  L  F  F  *  L  Q  L  L  Y  I  M  Q  Q  A  T  A  F  F  H  W  S  *  T  L  Y  *  N  D  E  L  Y  P  Q  R  I  F  I  G  E  T  V  S  E  T  F  L  K  A  I  S  G  T  V  G  L  N  S  R  F  D  K  L  K  D  I  *  C  F  *  C  A  *  T  V  R  Q  Q  R  V  N  I  P  T  L  S  S  I  V  Q  N  K  L  C  R  F  I  S  F  N  L  Q </first_frame>
            <second_frame>  D  *  S  K  Q  K  P  L  V  R  I  S  I  S  R  Y  A  E  I  T  V  T  E  D  G  *  I  C  Q  F  Q  K  L  R  S  P  N  L  R  C  R  L  G  S  T  E  R  S  Q  I  C  R  *  T  V  G  R  *  *  K  G  R  R  R  Q  I  I  V  I  G  T  G  K  L  C  C  S  C  R  R  W  W  G  R  E  *  R  Y  S  *  C  S  H  C  C  S  I  R  F  *  F  *  C  A  L  *  *  T   : R  G  *  V  R  N  W  R  *  S  A  L  *  D  G  S  T  S  R  W  R  R  S  Y  M  L  I  A  K  K  L  Q  :  M  V  *  L  G  F  S  D  R  *  K  S  F  I  G  S  A  I  I  *  E  S  T  *  A  I  G  R  C  W  T  T  T  S  T  N  F  *  R  *  R  F  F  T  C  C  R  W  *   : G  W  Q  V  E  G  F  *  V  A  *  D  G  K  Y  S  *  S  G  *  C  S  C  F  C  E  G  S  R  L  Q  :  P  G  W  K  I  S  C  I  C  W  K  R  P  L  P  D  L  G  C  L  K  I  N  L  C  S  F  F  D  E  G  K   : *  *  D  F  W  L  L  *  I  R  T  N  *  R  *  E  S  G  S  V  H  H  H  N  A  R :   S  R  G  K  Y  F  E  V  E  Y  Y  Y  V  E  E  D  K  I  K  A  C  C  S  *  S  Y  L  C  L  Q  Y  F  N  Q  W  K  A  S  G  N  :  R  N  N  *  G  R  C  S  D  S  V  F  Q  Q  F  S  S  A  K  C  G  K  K  G  S  S  W  S  C  N  N  I  E  V  L  R  R  F  E  :  G  F  A  F  C  L  L  G  F  K  S  E  S  D  N  Y  K  G  R  E  E  K  W :   S  E  L  V  D  R  H  T  C  S  F  D  C  N  C  C  I  L  C  S  K  Q  R  H  S  S  I  G  A  K  L  Y  I  K  M  T  S  F  I  P  K  E  F  L  *  V  K  Q  Y  L  K  H  F  *  R  P  S  L  E  Q  *  A  *  I  R  D  S  I  S  *  K  T  S  D  V  F  N  V  L  K  L  L  D  N  R  E  L  I  Y  L  L  C  P  P  L  Y  K  T  S  C  V  G  L  F  L  S  I  C   </second_frame>
            <third_frame>   T  E  A  N  K  S  L  W  C  A  S  Q  F  L  D  T  L  R  S  Q  L  P  K  M  A  E  F  A  N  S  K  N  Y  G  V  P  I  Y  G  A  G  W  V  P  P  S  A  L  R  S  A  V  E  P  S  V  D  D  E  K  D  D  G  D  K  S  S  S  S  A  P  G  N  Y  V  V  L  A  G  G  G  G  E  G  N  S  G  I  R  N  A  L  I  V  A  Q  F  D  F  D  S  N  V  L  S  D  E  P  :  V  A  R  L  G  T  G  G  D  L  P  Y  R  M  A  V  H  P  G  G  E  G  L  I  C  S  L  P  K  S  C  R :   W  F  D  W  D  F  Q  T  D  E  N  R  S  L  G  L  R  S  S  E  K  V  L  E  P  L  E  D  V  G  Q  Q  L  A  L  T  F  N  D  E  G  S  L  L  A  V  G  G  E  :  D  G  K  L  R  V  F  K  W  P  R  M  E  N  I  L  D  Q  A  N  A  H  A  S  V  K  D  L  D  F  S :   P  D  G  K  F  L  A  S  V  G  S  G  P  C  R  I  W  D  V  S  K  S  T  S  V  A  S  L  T  K  E  N  :  D  E  I  F  G  Y  C  R  F  A  P  I  N  D  E  N  Q  V  L  Y  I  T  T  M  R   : D  Q  G  G  S  I  S  K  W  S  T  T  T  W  R  R  I  K  S  K  R  V  V  R  D  P  I  C  A  F  N  I  S  T  N  G  K  L  L  A  I :   G  T  I  E  G  D  V  L  I  V  S  S  N  N  F  Q  V  Q  N  V  V  K  K  A  H  L  G  L  V  T  T  L  K  F  S  E  D  S  R :   A  L  L  S  A  S  L  D  S  R  V  R  V  T  I  I  K  E  E  K  K  S   : G  L  S  L  W  I  V  I  L  V  L  L  I  A  I  A  V  Y  Y  A  A  S  N  G  I  L  P  L  E  L  N  S  I  L  K  *  R  A  L  S  P  K  N  F  Y  R  *  N  S  I  *  N  I  F  E  G  H  L  W  N  S  R  L  E  F  E  I  R  *  V  K  R  H  L  M  F  L  M  C  L  N  C  *  T  T  E  S  *  Y  T  Y  F  V  L  H  C  T  K  Q  V  V  *  V  Y  F  F  Q  F  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0093E04.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76097" stop="76420"/>
                    <exon start="77327" stop="77421"/>
                    <exon start="77831" stop="77978"/>
                    <exon start="79607" stop="79698"/>
                    <exon start="79794" stop="79890"/>
                    <exon start="80253" stop="80328"/>
                    <exon start="80431" stop="80551"/>
                    <exon start="82664" stop="82780"/>
                    <exon start="82868" stop="82935"/>
                    <exon start="83358" stop="83464"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEANKSLWCASQFLDTLRSQLPKMAEFANSKNYGVPIYGAGWVPPSALRSAVEPSVDDEKDDGDKSSSSAPGNYVVLAGGGGEGNSGIRNALIVAQFDFDSNVLSDEPVARLGTGGDLPYRMAVHPGGEGLICSLPKSCRWFDWDFQTDENRSLGLRSSEKVLEPLEDVGQQLALTFNDEGSLLAVGGEDGKLRVFKWPRMENILDQANAHASVKDLDFSPDGKFLASVGSGPCRIWDVSKSTSVASLTKENDEIFGYCRFAPINDENQVLYITTMRDQGGSISKWSTTTWRRIKSKRVVRDPICAFNISTNGKLLAIGTIEGDVLIVSSNNFQVQNVVKKAHLGLVTTLKFSEDSRALLSASLDSRVRVTIIKEEKKSGLSLWIVILVLLIAIAVYYAASNGILPLELNSILK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81872" e_stop="82640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="81872" e_stop="82640" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81872" stop="82640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341200" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAGAGCAAAAAATGACCTGCAGTAAGAAACCCAAGATATTACCACGTGTAAAAGGCTAAAAACTGACACACAACTGGAAGTTGTCATAATTTTAGATTCAGACAGCATGTCCTACAAGTAATTTTACTGCACAAGACAAAATAGGAAAATACATGTAAAACTGTATAGAGAAGTTACAGTAACATATATCTAGCAACCAATGAGAAGAAACAGTTCATTCTACATTACACAAATATCCTTCTAAATAGGACGACCACAAGTTCCTCGCGTCCAGCTTTTATAGTAGTAGTAATAATAATATGTGGGTCCACCTGCTAACCTCAGTGAACAGGTTTACTCGACCACCTGTGCTTGTGAGTTGTAAGGGACTGCCTGGACACCAACTCGAATAAAAAATAAGTTGCTGATTGACTTCTCATGGAACGTAATACAAGATGCTTTCTCTTATATGATTAAGCCTGTATCATTGAAGACACTCTGAAAGAAACCAAATCTCAGAGTAAGATGTCAGATTGTTAGCTTGTTGTTCAAGAGACATGATGTATTGTTCTGAGGGACTATTGAGTCAATTTCAGTTTCTCCAGCTAATATATTTAACAACAACTTACATTTAGGTTGTAAATTTTTCAAGGAATTTCCCATAAGTTCATATCATACATTATGATCCGCATGAAACTACCATCATCCTATTGACATCTTATAATGCTGAGTAGTAGAAGCAATAATGATGTTCCGTAGAATATGTTCTTGGGAACTTAATGGCTGT</gDNA_template>
            <first_frame> Q  K  S  K  K  *  P  A  V  R  N  P  R  Y  Y  H  V  *  K  A  K  N  *  H  T  T  G  S  C  H  N  F  R  F  R  Q  H  V  L  Q  V  I  L  L  H  K  T  K  *  E  N  T  C  K  T  V  *  R  S  Y  S  N  I  Y  L  A  T  N  E  K  K  Q  F  I  L  H  Y  T  N  I  L  L  N  R  T  T  T  S  S  S  R  P  A  F  I  V  V  V  I  I  I  C  G  S  T  C  *  P  Q  *  T  G  L  L  D  H  L  C  L  *  V  V  R  D  C  L  D  T  N  S  N  K  K  *  V  A  D  *  L  L  M  E  R  N  T  R  C  F  L  L  Y  D  *  A  C  I  I  E  D  T  L  K  E  T  K  S  Q  S  K  M  S  D  C  *  L  V  V  Q  E  T  *  C  I  V  L  R  D  Y  *  V  N  F  S  F  S  S  *  Y  I  *  Q  Q  L  T  F  R  L  *  I  F  Q  G  I  S  H  K  F  I  S  Y  I  M  I  R  M  K  L  P  S  S  Y  *  H  L  I  M  L  S  S  R  S  N  N  D  V  P  *  N  M  F  L  G  T  *  W  L  </first_frame>
            <second_frame>  K  R  A  K  N  D  L  Q  *  E  T  Q  D  I  T  T  C  K  R  L  K  T  D  T  Q  L  E  V  V  I  I  L  D  S  D  S  M  S  Y  K  *  F  Y  C  T  R  Q  N  R  K  I  H  V  K  L  Y  R  E  V  T  V  T  Y  I  *  Q  P  M  R  R  N  S  S  F  Y  I  T  Q  I  S  F  *  I  G  R  P  Q  V  P  R  V  Q  L  L  *  *  *  *  *  *  Y  V  G  P  P  A  N  L  S  E  Q  V  Y  S  T  T  C  A  C  E  L  *  G  T  A  W  T  P  T  R  I  K  N  K  L  L  I  D  F  S  W  N  V  I  Q  D  A  F  S  Y  M  I  K  P  V  S  L  K  T  L  *  K  K  P  N  L  R  V  R  C  Q  I  V  S  L  L  F  K  R  H  D  V  L  F  *  G  T  I  E  S  I  S  V  S  P  A  N  I  F  N  N  N  L  H  L  G  C  K  F  F  K  E  F  P  I  S  S  Y  H  T  L  *  S  A  *  N  Y  H  H  P  I  D  I  L  *  C  *  V  V  E  A  I  M  M  F  R  R  I  C  S  W  E  L  N  G  C </second_frame>
            <third_frame>   K  E  Q  K  M  T  C  S  K  K  P  K  I  L  P  R  V  K  G  *  K  L  T  H  N  W  K  L  S  *  F  *  I  Q  T  A  C  P  T  S  N  F  T  A  Q  D  K  I  G  K  Y  M  *  N  C  I  E  K  L  Q  *  H  I  S  S  N  Q  *  E  E  T  V  H  S  T  L  H  K  Y  P  S  K  *  D  D  H  K  F  L  A  S  S  F  Y  S  S  S  N  N  N  M  W  V  H  L  L  T  S  V  N  R  F  T  R  P  P  V  L  V  S  C  K  G  L  P  G  H  Q  L  E  *  K  I  S  C  *  L  T  S  H  G  T  *  Y  K  M  L  S  L  I  *  L  S  L  Y  H  *  R  H  S  E  R  N  Q  I  S  E  *  D  V  R  L  L  A  C  C  S  R  D  M  M  Y  C  S  E  G  L  L  S  Q  F  Q  F  L  Q  L  I  Y  L  T  T  T  Y  I  *  V  V  N  F  S  R  N  F  P  *  V  H  I  I  H  Y  D  P  H  E  T  T  I  I  L  L  T  S  Y  N  A  E  *  *  K  Q  *  *  C  S  V  E  Y  V  L  G  N  L  M  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0093E04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 53 chains have been computed
$ 
$ memory statistics:
$ 124632 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 5934 bytes was the average size of a spliced alignment
$ 25472 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1498 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 74 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 18:26:25
-->
