<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-08 14:32:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="11705" stop="12585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12005" g_stop="12326" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12005" e_stop="12326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCACAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTATAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACGGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="11705" stop="12600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12005" g_stop="12310" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12005" e_stop="12310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCACAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTATAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACGGAAACAGAATTATACACTTCTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="11706" stop="12752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12006" g_stop="12452" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12006" e_stop="12452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCACAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTATAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACGGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGACTGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGAC-ACTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E351886" ref_strand="+" ref_description="SGN-E351886 [cTOS-8-D9]">
      <seq>ggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcaacgtttgagaagttgagatacaagattggaatgcgccgtctccaagatatcaagtaaagttttcatcagggggagtgaaatacgcgttgtactcttttccttaactatgggtttgtcccaagttgggttttcctggtaagggttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="16001" stop="15021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15701" g_stop="15321" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E351886" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15701" e_stop="15321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTAAAAGGAGGATACATCAAAGGAGACCAGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGAGTTTTCCTGGTAAGGTTTTTAAT</genome_strand>
        <mrna_strand>GGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCAACGTTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCAAGATATCAAGTAAAGTTTTCATCAGGGGGAGTGAAATACGCGTTGTACTCTTTTCCTTAACTATGGGTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGGTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E211563" ref_strand="+" ref_description="SGN-E211563 [cLEC-67-I7]">
      <seq>ataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccataatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatgggtgagatagaagtncaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcancgtttgagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="16518" stop="15155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16218" g_stop="15455" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E211563" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16218" e_stop="15455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGTTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGCTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAATCATTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTAAAAGGAGGATACATCAAAGGAGACCAGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAAT-GGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTG</genome_strand>
        <mrna_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCATAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGGTGAGATAGAAGTNCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCANCGTTTGAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E200850" ref_strand="+" ref_description="SGN-E200850 [cLEC-5-I1]">
      <seq>tttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgcacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatctttaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="16187" stop="15189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15887" g_stop="15489" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E200850" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15887" e_stop="15489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAATCATTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTAAAAGGAGGATACATCAAAGGAGACCAGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAC</genome_strand>
        <mrna_strand>TTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGCACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTTAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E201786" ref_strand="+" ref_description="SGN-E201786 [cLEC-11-H5]">
      <seq>tggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccacccttattgtccgaagataatgctgcatgtatagctcaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="16491" stop="15322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16191" g_stop="15621" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E201786" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16191" e_stop="15621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGTTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGCTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAATCATTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTAAA</genome_strand>
        <mrna_strand>TGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCACCCTTATTGTCCGAAGATAATGCTGCATGTATAGCTCAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="16733" stop="15506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16433" g_stop="15806" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16433" e_stop="15806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGTTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGCTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="16675" stop="15531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16383" g_stop="15831" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16383" e_stop="15831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGTTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGCTACGCAGATGCAGGGTATTTATCAGAT-CCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E205887" ref_strand="+" ref_description="SGN-E205887 [cLEC-20-D8]">
      <seq>cgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtacgccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="16773" stop="15536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16473" g_stop="15836" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E205887" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16473" e_stop="15836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGTTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGCTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGT</genome_strand>
        <mrna_strand>CGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACGCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="16733" stop="15558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16433" g_stop="15858" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16433" e_stop="15858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGTTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGCTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E331947" ref_strand="+" ref_description="SGN-E331947 [cTOD-16-G12]">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="17349" stop="16039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17049" g_stop="16339" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E331947" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17049" e_stop="16339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCAATAATCCAAACACCTGAAGGTATCAAACCAGTGGGGTACAAATGGGTTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGACATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTTAGATATCTCATAAATCTGGCAGTTCATGAAAAAGTTGAAATGCGTCTGATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTTAAAGTGCCTGAAACATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGGACTGAAACAATCAGGAAGGATGTGGTACAATCGTTTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTG</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E206250" ref_strand="+" ref_description="SGN-E206250 [cLEC-29-L2]">
      <seq>acgaatttgctacttgcatagaaatctccaattgtcagttggattcaagatgagtaatggagatgtatacctttttcatagtgctactacacatacaatattaaaagaaaagaaaagaaatacttttctaatttggttatgaaaatgacatatgtcaacacaatatcaggtagtacaaaattaattgagagctctggaagagcgaccttattacaacctggagagacaatattggacatttgtaatgcattataccgtagtaagtcacaaagaaacttattaagtttcagagtaattcgccaaaatggctatcacgttgagacgactaatgaaggaaaggatgaatgcctttacattactacaattaatgtacagaagaaaattgtgcatgaaaaattacgtgcattttcttctaggttctactatacaagtgtaagtacagttgaatcacatgtcgtagtaaacaaaaggtttactaattttaatgattctattatttggtatgaccggttgggccatcccggatttaatatgatgcacagaatcattgagaattcacgtgggcacacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="19225" stop="18059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18925" g_stop="18359" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E206250" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18925" e_stop="18359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAGTTGCTACTTGCAAAGAAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAGTGCTACAACGCATACAATATT---A-AAA-GAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGCAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTTTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCTGGATTTAATATGATGCACAAAATCATTGAGAATTCACATGGACACACCTT</genome_strand>
        <mrna_strand>ACGAATTTGCTACTTGCATAGAAATCTCCAATTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATACCTTTTTCATAGTGCTACTACACATACAATATTAAAAGAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGACATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGAGCTCTGGAAGAGCGACCTTATTACAACCTGGAGAGACAATATTGGACATTTGTAATGCATTATACCGTAGTAAGTCACAAAGAAACTTATTAAGTTTCAGAGTAATTCGCCAAAATGGCTATCACGTTGAGACGACTAATGAAGGAAAGGATGAATGCCTTTACATTACTACAATTAATGTACAGAAGAAAATTGTGCATGAAAAATTACGTGCATTTTCTTCTAGGTTCTACTATACAAGTGTAAGTACAGTTGAATCACATGTCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTCTATTATTTGGTATGACCGGTTGGGCCATCCCGGATTTAATATGATGCACAGAATCATTGAGAATTCACGTGGGCACACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E332350" ref_strand="+" ref_description="SGN-E332350 [cTOD-17-L10]">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="19107" stop="18126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18794" g_stop="18426" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E332350" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18794" e_stop="18426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGCAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTTTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E331801" ref_strand="+" ref_description="SGN-E331801 [cTOD-7-E6]">
      <seq>aaaagcttaagcaaaatcccaaatactctgcaacttttcttcaaatcacttctctttttcttcttctctctcgtgacccattagtcttctcctttatttctacttcttctggatttttccgtcacgggaatcttgaaattgcccataaataattattcactctgttgttacttttcctaaatttttgaaaaaaattgtgaatgttttgagttaatgctgaaaattgtttgatacccagttttctccgtgataaagggtgaaagaatccgtgattttttttctttttcaactttgctagttgataaaaagagtgtttttttttttcgaagatgagtcggaaaattgagaaaatggcttcaattgatgcccaattgaggctattggcaccagcgaaagtgtcagaggatgataagcttgtggagtatgatgctttgttgcttgacagatttcttgatattctgcaggatttgcatggagaggatattcgagaaacggttcaagattgttatgaactatctgctgaatatgaagggaaacatgacccacataagttggaagagcttgggagtatgcttaccagtttggatgctgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="23023" stop="25439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23323" g_stop="23815" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23816" i_stop="25038" i_length="1223">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25039" g_stop="25139" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="595" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E331801" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23323" e_stop="23815"/>
          <exon e_start="25039" e_stop="25139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTTAAGCAAAATCCCAAATACTCTGCAACTTTTCTTCAAATCACTTCTCTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTG-TTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACGGTATTTTTAGTTTGTTTTTTAAAGTTTTTTTTGTGTTTTTTCATACTTCTGGTGAAACCCTTTGTTGGGTTTCTTAATGATTTGTGGTTTTGAATGCAGTAGGGTTATTGTACATTTTGCTTAGTTTTGTTGGTACATAGTTTAATTTCCTGTTTATTAACTTCTGTTGAACCCCTTTGCTGTGTTTTTTTTTCTTCATAATTTATGGTTTGAATGCAGTATTCTAATCGTATGTTTTGCTTAATTTTGTTGGCACGTGGTTTAATGTTGTGTTTATCAGCTCCTACTGTAATTCTGTTGATGTTTATGTGGTGTGAGTAGAAAAGAGTGGTTCTTTATTCATTGTTTATGGTTTGAATGCCTTAGACTAGTTTCCATTATACCAAGTTTTGTCAGTTCGTAGTAATCTTTATTGTTGAACTCTTGTTTCTTCACGTTCTTTTGTTGTGTTTATGCGGTGAGTGGGGAAAAGGCTGGTACTTTATTAATATTGTGGTATGGATGCTCTAGGCTGATTTCCAGTATGCTTGATTTTGTAAGTTCTTGACTAGTTTATACAAACAATTTAAACCCTTTTTTTTGGGTGAATGGACTCTTTAAGATTGGTAGTGTGTTCATAATTTGTGGTTTCAATCACTAGTCAATTCTCATAATGTGTTATTTTTTTAGTCCTTAGTCTGTTTAGAGCATATATAAAGCTTTGAGTTGAGTGTAACAACCAATAAAAAGGAGGGAGTGTATTGTTGAGGGTGATGGTCTGATGGAGGTTCTTTTAATTTGACTAAGACATATAGTTATGCCATTTTGAATTAGTTAGTGATGGTGAAATCCTCCTGACTCATTAAGGAGATGTCTCTATTAGCCTTTGAATCAGGGACATTATTCTTTTTAAATATGTGCAAAGTAACTTCCCCTATCTTATGAAAAGAAGAAACAACTTATTTCTATTCACCTTGTTCCTTATCTATTATGATGAACTGATTTGGCCCTATTAAATTAGTTAAGCTTTGGTCCCTGGTACCTGGGTAGTACTCACATCTCCTTTAATGTCTTCCTCTATCAAAGAATGTTCATCTGGGATAAAAGTGAGTCAAAGTTTTACTTTCGATTATTGCATGTTGTTTCTAATCTAAATTATAGGTCCTATTATCTTAATCATTACAAAATATTAGTGATTTATGGTAAAAGTGGAAGGAACTTACTGTGGTGCTACATTGTGTTAGGTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGA</genome_strand>
        <mrna_strand>AAAAGCTTAAGCAAAATCCCAAATACTCTGCAACTTTTCTTCAAATCACTTCTCTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E740403" ref_strand="+" ref_description="SGN-E740403 [LC21BA12]">
      <seq>cgcattaattctctttttcttcttctctctcgtgacccattagtcttctcctttatttctacttcttctggatttttccgtcacgggaatcttgaaattgcccataaataattattcactctgttgttacttttcctaaatttttgaaaaaaattgtgaatgttttgagttaatgctgaaaattgtttgatacccagttttctccgtgataaagggtgaaagaatccgtgattttttttctttttcaactttgctagttgataaaaagagtgttttttttttcgaagatgagtcggaaaattgagaaaatggcttcaattgatgcccaattgaggctattggcaccagcgaaagtgtcaaaggatgataagcttgtggagtatgatgctttgttgcttgacagatttcttgatattctgcaggatttgcatggagaggatattcgaaaaacggttcaagattgttatgaactatctgctgaatatgaagggaaacatgacccacataatttggaaaagcttgggagtatgcttaccagtttggatgctggggattccattgtagtcaccaaagccttttctaacatgcttaacttgggtaaccttgctgaagaggttcaaatagcttacagacgaagaagtaagctaaaaaagcgtgatttttcggatgaggcttctgcactaactgaatcagacattgaaaagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="23067" stop="25594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23364" g_stop="23815" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23816" i_stop="25038" i_length="1223">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25039" g_stop="25294" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="708" r_length="256" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E740403" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23364" e_stop="23815"/>
          <exon e_start="25039" e_stop="25294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCACTTCTCTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACGGTATTTTTAGTTTGTTTTTTAAAGTTTTTTTTGTGTTTTTTCATACTTCTGGTGAAACCCTTTGTTGGGTTTCTTAATGATTTGTGGTTTTGAATGCAGTAGGGTTATTGTACATTTTGCTTAGTTTTGTTGGTACATAGTTTAATTTCCTGTTTATTAACTTCTGTTGAACCCCTTTGCTGTGTTTTTTTTTCTTCATAATTTATGGTTTGAATGCAGTATTCTAATCGTATGTTTTGCTTAATTTTGTTGGCACGTGGTTTAATGTTGTGTTTATCAGCTCCTACTGTAATTCTGTTGATGTTTATGTGGTGTGAGTAGAAAAGAGTGGTTCTTTATTCATTGTTTATGGTTTGAATGCCTTAGACTAGTTTCCATTATACCAAGTTTTGTCAGTTCGTAGTAATCTTTATTGTTGAACTCTTGTTTCTTCACGTTCTTTTGTTGTGTTTATGCGGTGAGTGGGGAAAAGGCTGGTACTTTATTAATATTGTGGTATGGATGCTCTAGGCTGATTTCCAGTATGCTTGATTTTGTAAGTTCTTGACTAGTTTATACAAACAATTTAAACCCTTTTTTTTGGGTGAATGGACTCTTTAAGATTGGTAGTGTGTTCATAATTTGTGGTTTCAATCACTAGTCAATTCTCATAATGTGTTATTTTTTTAGTCCTTAGTCTGTTTAGAGCATATATAAAGCTTTGAGTTGAGTGTAACAACCAATAAAAAGGAGGGAGTGTATTGTTGAGGGTGATGGTCTGATGGAGGTTCTTTTAATTTGACTAAGACATATAGTTATGCCATTTTGAATTAGTTAGTGATGGTGAAATCCTCCTGACTCATTAAGGAGATGTCTCTATTAGCCTTTGAATCAGGGACATTATTCTTTTTAAATATGTGCAAAGTAACTTCCCCTATCTTATGAAAAGAAGAAACAACTTATTTCTATTCACCTTGTTCCTTATCTATTATGATGAACTGATTTGGCCCTATTAAATTAGTTAAGCTTTGGTCCCTGGTACCTGGGTAGTACTCACATCTCCTTTAATGTCTTCCTCTATCAAAGAATGTTCATCTGGGATAAAAGTGAGTCAAAGTTTTACTTTCGATTATTGCATGTTGTTTCTAATCTAAATTATAGGTCCTATTATCTTAATCATTACAAAATATTAGTGATTTATGGTAAAAGTGGAAGGAACTTACTGTGGTGCTACATTGTGTTAGGTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAGATAGCTTACAGACGAAGAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAACTGAATCAGACATTGAAGAGACTT</genome_strand>
        <mrna_strand>CGCATTAATTCTCTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAAAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAAAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAATTTGGAAAAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAAATAGCTTACAGACGAAGAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAACTGAATCAGACATTGAAAAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E739574" ref_strand="+" ref_description="SGN-E739574 [LC18AA02]">
      <seq>aaatcacttctctttttcttcttctctctcgtgacccattagtcttctcctttatttctacttcttctggatttttccgtcacgggaatcttgaaattgcccataaataattattcactctgttgttacttttcctaaatttttgaaaaaaattgtgaatgttttgagttaatgctgaaaattgtttgatacccagttttctccgtgataaagggtgaaagaatccgtgattttttttctttttcaactttgctagttgataaaaagagtgttttttttttcgaagatgagtcggaaaattgagaaaatggcttcaattgatgcccaattgaggctattggcaccagcgaaagtgtcagaggatgataagcttgtggagtatgatgctttgttgcttgacagatttcttgatattctgcaggatttgcatggagaggatattcgagaaacggttcaagattgttatgaactatctgctgaatatgaagggaaacatgacccacataagttggaagagcttgggagtatgcttaccagtttggatgctggggattccattgtagtcaccaaagccttttctaacatgcttaacttgggtaaccttgctgaagaggttcagatagcttacagacgaagaagtaagctaaaaaagcgtgatttttcggatgaggcttctgcactaactgaatcagacattgaagagacttttaagaagctcgtcggacagctaaacaaatcaccccaagaagtttttgatgctttgaagaaccagaccgtggacttggtgctaacagcacatcctacccagtctgttcgtaggtctttgcttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="23065" stop="25720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23365" g_stop="23815" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23816" i_stop="25038" i_length="1223">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25039" g_stop="25420" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="833" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E739574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23365" e_stop="23815"/>
          <exon e_start="25039" e_stop="25420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCACTTCTCTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACGGTATTTTTAGTTTGTTTTTTAAAGTTTTTTTTGTGTTTTTTCATACTTCTGGTGAAACCCTTTGTTGGGTTTCTTAATGATTTGTGGTTTTGAATGCAGTAGGGTTATTGTACATTTTGCTTAGTTTTGTTGGTACATAGTTTAATTTCCTGTTTATTAACTTCTGTTGAACCCCTTTGCTGTGTTTTTTTTTCTTCATAATTTATGGTTTGAATGCAGTATTCTAATCGTATGTTTTGCTTAATTTTGTTGGCACGTGGTTTAATGTTGTGTTTATCAGCTCCTACTGTAATTCTGTTGATGTTTATGTGGTGTGAGTAGAAAAGAGTGGTTCTTTATTCATTGTTTATGGTTTGAATGCCTTAGACTAGTTTCCATTATACCAAGTTTTGTCAGTTCGTAGTAATCTTTATTGTTGAACTCTTGTTTCTTCACGTTCTTTTGTTGTGTTTATGCGGTGAGTGGGGAAAAGGCTGGTACTTTATTAATATTGTGGTATGGATGCTCTAGGCTGATTTCCAGTATGCTTGATTTTGTAAGTTCTTGACTAGTTTATACAAACAATTTAAACCCTTTTTTTTGGGTGAATGGACTCTTTAAGATTGGTAGTGTGTTCATAATTTGTGGTTTCAATCACTAGTCAATTCTCATAATGTGTTATTTTTTTAGTCCTTAGTCTGTTTAGAGCATATATAAAGCTTTGAGTTGAGTGTAACAACCAATAAAAAGGAGGGAGTGTATTGTTGAGGGTGATGGTCTGATGGAGGTTCTTTTAATTTGACTAAGACATATAGTTATGCCATTTTGAATTAGTTAGTGATGGTGAAATCCTCCTGACTCATTAAGGAGATGTCTCTATTAGCCTTTGAATCAGGGACATTATTCTTTTTAAATATGTGCAAAGTAACTTCCCCTATCTTATGAAAAGAAGAAACAACTTATTTCTATTCACCTTGTTCCTTATCTATTATGATGAACTGATTTGGCCCTATTAAATTAGTTAAGCTTTGGTCCCTGGTACCTGGGTAGTACTCACATCTCCTTTAATGTCTTCCTCTATCAAAGAATGTTCATCTGGGATAAAAGTGAGTCAAAGTTTTACTTTCGATTATTGCATGTTGTTTCTAATCTAAATTATAGGTCCTATTATCTTAATCATTACAAAATATTAGTGATTTATGGTAAAAGTGGAAGGAACTTACTGTGGTGCTACATTGTGTTAGGTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAGATAGCTTACAGACGAAGAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAACTGAATCAGACATTGAAGAGACTTTTAAGAAGCTCGTCGGACAGCTAAACAAATCACCCCAAGAAGTTTTTGATGCTTTGAAGAACCAGACCGTGGACTTGGTGCTAACAGCACATCCTACCCAGTCTGTTCGTAGGTCTTTGCTTCAAA</genome_strand>
        <mrna_strand>AAATCACTTCTCTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAGATAGCTTACAGACGAAGAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAACTGAATCAGACATTGAAGAGACTTTTAAGAAGCTCGTCGGACAGCTAAACAAATCACCCCAAGAAGTTTTTGATGCTTTGAAGAACCAGACCGTGGACTTGGTGCTAACAGCACATCCTACCCAGTCTGTTCGTAGGTCTTTGCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E739887" ref_strand="+" ref_description="SGN-E739887 [LC19BA02]">
      <seq>aaatcacttctctttttcttcttctctctcgtgacccattagtcttctcctttatttctacttcttctggatttttccgtcacgggaatcttgaaattgcccataaataattattcactctgttgttacttttcctaaatttttgaaaaaaattgtgaatgttttgagttaatgctgaaaattgtttgatacccagttttctccgtgataaagggtgaaagaatccgtgattttttttctttttcaactttgctagttgataaaaagagtgttttttttttcgaaaatgagtcggaaaattgaaaaaatggcttcaattgatgcccaattgaggctattggcaccagcgaaagtgtcaaaggatgataagcttgtggagtatgatgctttgttgcttgacaaatttcttgatattctgcaggatttgcatggagaggatattcgagaaacggttcaagattgttatgaactatctgctgaatatgaagggaaacatgacccacataagttggaagagcttgggagtatgcttaccagtttggatgctggggattccattgtagtcaccaaagccttttctaacatgcttaacttgggtaaccttgctgaagaggttcaaatagcttacagacaaaaaagtaagctaaaaaagcgtgatttttcggatgaggcttctgcactaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="23065" stop="25571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23365" g_stop="23815" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23816" i_stop="25038" i_length="1223">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25039" g_stop="25271" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="684" r_length="233" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E739887" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23365" e_stop="23815"/>
          <exon e_start="25039" e_stop="25271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCACTTCTCTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACGGTATTTTTAGTTTGTTTTTTAAAGTTTTTTTTGTGTTTTTTCATACTTCTGGTGAAACCCTTTGTTGGGTTTCTTAATGATTTGTGGTTTTGAATGCAGTAGGGTTATTGTACATTTTGCTTAGTTTTGTTGGTACATAGTTTAATTTCCTGTTTATTAACTTCTGTTGAACCCCTTTGCTGTGTTTTTTTTTCTTCATAATTTATGGTTTGAATGCAGTATTCTAATCGTATGTTTTGCTTAATTTTGTTGGCACGTGGTTTAATGTTGTGTTTATCAGCTCCTACTGTAATTCTGTTGATGTTTATGTGGTGTGAGTAGAAAAGAGTGGTTCTTTATTCATTGTTTATGGTTTGAATGCCTTAGACTAGTTTCCATTATACCAAGTTTTGTCAGTTCGTAGTAATCTTTATTGTTGAACTCTTGTTTCTTCACGTTCTTTTGTTGTGTTTATGCGGTGAGTGGGGAAAAGGCTGGTACTTTATTAATATTGTGGTATGGATGCTCTAGGCTGATTTCCAGTATGCTTGATTTTGTAAGTTCTTGACTAGTTTATACAAACAATTTAAACCCTTTTTTTTGGGTGAATGGACTCTTTAAGATTGGTAGTGTGTTCATAATTTGTGGTTTCAATCACTAGTCAATTCTCATAATGTGTTATTTTTTTAGTCCTTAGTCTGTTTAGAGCATATATAAAGCTTTGAGTTGAGTGTAACAACCAATAAAAAGGAGGGAGTGTATTGTTGAGGGTGATGGTCTGATGGAGGTTCTTTTAATTTGACTAAGACATATAGTTATGCCATTTTGAATTAGTTAGTGATGGTGAAATCCTCCTGACTCATTAAGGAGATGTCTCTATTAGCCTTTGAATCAGGGACATTATTCTTTTTAAATATGTGCAAAGTAACTTCCCCTATCTTATGAAAAGAAGAAACAACTTATTTCTATTCACCTTGTTCCTTATCTATTATGATGAACTGATTTGGCCCTATTAAATTAGTTAAGCTTTGGTCCCTGGTACCTGGGTAGTACTCACATCTCCTTTAATGTCTTCCTCTATCAAAGAATGTTCATCTGGGATAAAAGTGAGTCAAAGTTTTACTTTCGATTATTGCATGTTGTTTCTAATCTAAATTATAGGTCCTATTATCTTAATCATTACAAAATATTAGTGATTTATGGTAAAAGTGGAAGGAACTTACTGTGGTGCTACATTGTGTTAGGTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAGATAGCTTACAGACGAAGAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAAC</genome_strand>
        <mrna_strand>AAATCACTTCTCTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAAATGAGTCGGAAAATTGAAAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAAAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAAATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAAATAGCTTACAGACAAAAAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E740042" ref_strand="+" ref_description="SGN-E740042 [LC19DD07]">
      <seq>aaatcacttctctttttcttcttctctctcgtgacccattagtcttctcctttatttctacttcttctggatttttccgtcacgggaatcttgaaattgcccataaataattattcactctgttgttacttttcctaaatttttgaaaaaaattgtgaatgttttgagttaatgctgaaaattgtttgatacccagttttctccgtgataaagggtgaaagaatccgtgattttttttctttttcaactttgctagttgataaaaagagtgttttttttttcgaaaatgagtcggaaaattgagaaaatggcttcaattgatgcccaattgaggctattggcaccagcgaaagtgtcaaaggatgataagcttgtggagtatgatgctttgttgcttgacaaatttcttgatattctgcaggatttgcatggagaggatattcgagaaacggttcaagattgttatgaactatctgctgaatatgaagggaaacatgacccacataatttggaagagcttgggagtatgcttaccagtttggatgctggggattccattgtagtcaccaaagccttttctaacatgcttaacttgggtaaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="23065" stop="25493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23365" g_stop="23815" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23816" i_stop="25038" i_length="1223">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25039" g_stop="25193" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="606" r_length="155" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E740042" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23365" e_stop="23815"/>
          <exon e_start="25039" e_stop="25193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCACTTCTCTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACGGTATTTTTAGTTTGTTTTTTAAAGTTTTTTTTGTGTTTTTTCATACTTCTGGTGAAACCCTTTGTTGGGTTTCTTAATGATTTGTGGTTTTGAATGCAGTAGGGTTATTGTACATTTTGCTTAGTTTTGTTGGTACATAGTTTAATTTCCTGTTTATTAACTTCTGTTGAACCCCTTTGCTGTGTTTTTTTTTCTTCATAATTTATGGTTTGAATGCAGTATTCTAATCGTATGTTTTGCTTAATTTTGTTGGCACGTGGTTTAATGTTGTGTTTATCAGCTCCTACTGTAATTCTGTTGATGTTTATGTGGTGTGAGTAGAAAAGAGTGGTTCTTTATTCATTGTTTATGGTTTGAATGCCTTAGACTAGTTTCCATTATACCAAGTTTTGTCAGTTCGTAGTAATCTTTATTGTTGAACTCTTGTTTCTTCACGTTCTTTTGTTGTGTTTATGCGGTGAGTGGGGAAAAGGCTGGTACTTTATTAATATTGTGGTATGGATGCTCTAGGCTGATTTCCAGTATGCTTGATTTTGTAAGTTCTTGACTAGTTTATACAAACAATTTAAACCCTTTTTTTTGGGTGAATGGACTCTTTAAGATTGGTAGTGTGTTCATAATTTGTGGTTTCAATCACTAGTCAATTCTCATAATGTGTTATTTTTTTAGTCCTTAGTCTGTTTAGAGCATATATAAAGCTTTGAGTTGAGTGTAACAACCAATAAAAAGGAGGGAGTGTATTGTTGAGGGTGATGGTCTGATGGAGGTTCTTTTAATTTGACTAAGACATATAGTTATGCCATTTTGAATTAGTTAGTGATGGTGAAATCCTCCTGACTCATTAAGGAGATGTCTCTATTAGCCTTTGAATCAGGGACATTATTCTTTTTAAATATGTGCAAAGTAACTTCCCCTATCTTATGAAAAGAAGAAACAACTTATTTCTATTCACCTTGTTCCTTATCTATTATGATGAACTGATTTGGCCCTATTAAATTAGTTAAGCTTTGGTCCCTGGTACCTGGGTAGTACTCACATCTCCTTTAATGTCTTCCTCTATCAAAGAATGTTCATCTGGGATAAAAGTGAGTCAAAGTTTTACTTTCGATTATTGCATGTTGTTTCTAATCTAAATTATAGGTCCTATTATCTTAATCATTACAAAATATTAGTGATTTATGGTAAAAGTGGAAGGAACTTACTGTGGTGCTACATTGTGTTAGGTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGC</genome_strand>
        <mrna_strand>AAATCACTTCTCTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAAATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAAAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAAATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAATTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E739964" ref_strand="+" ref_description="SGN-E739964 [LC19CB01]">
      <seq>ctcacttctctttttcttcttctctttcgtgacccattagtcttctcctttatttctacttcttctggatttttccgtcacgggaatcttgaaattgcccataaataattattcactctgttgttacttttcctaaatttttgaaaaaaattgtgaatgttttgagttaatgctgaaaattgtttgatacccagttttctccgtgataaagggtgaaagaatccgtgattttttttctttttcaactttgctagttgataaaaagagtgttttttttttcgaaaatgagtcggaaaattgagaaaatggcttcaattgatgcccaattgaggctattggcaccagcgaaagtgtcaaaggatgataagcttgtggagtatgatgctttgttgcttgacagatttcttgatattctgcaggatttgcatggagaggatattcaagaaacggttcaagattgttatgaactatctgctgaatatgaagggaaacatgacccacataatttggaagagcttgggagtatgcttaccagtttggatgctggggattccattgtagtcaccaaagccttttctaacatgcttaacttgggtaaccttgctgaagaggttcaaatagcttacagacgaaaaagtaagctaaaaaagcgtgatttttcggatgaggcttctgcactaactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="23068" stop="25575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23367" g_stop="23815" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23816" i_stop="25038" i_length="1223">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25039" g_stop="25275" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="686" r_length="237" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E739964" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23367" e_stop="23815"/>
          <exon e_start="25039" e_stop="25275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTTCTCTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACGGTATTTTTAGTTTGTTTTTTAAAGTTTTTTTTGTGTTTTTTCATACTTCTGGTGAAACCCTTTGTTGGGTTTCTTAATGATTTGTGGTTTTGAATGCAGTAGGGTTATTGTACATTTTGCTTAGTTTTGTTGGTACATAGTTTAATTTCCTGTTTATTAACTTCTGTTGAACCCCTTTGCTGTGTTTTTTTTTCTTCATAATTTATGGTTTGAATGCAGTATTCTAATCGTATGTTTTGCTTAATTTTGTTGGCACGTGGTTTAATGTTGTGTTTATCAGCTCCTACTGTAATTCTGTTGATGTTTATGTGGTGTGAGTAGAAAAGAGTGGTTCTTTATTCATTGTTTATGGTTTGAATGCCTTAGACTAGTTTCCATTATACCAAGTTTTGTCAGTTCGTAGTAATCTTTATTGTTGAACTCTTGTTTCTTCACGTTCTTTTGTTGTGTTTATGCGGTGAGTGGGGAAAAGGCTGGTACTTTATTAATATTGTGGTATGGATGCTCTAGGCTGATTTCCAGTATGCTTGATTTTGTAAGTTCTTGACTAGTTTATACAAACAATTTAAACCCTTTTTTTTGGGTGAATGGACTCTTTAAGATTGGTAGTGTGTTCATAATTTGTGGTTTCAATCACTAGTCAATTCTCATAATGTGTTATTTTTTTAGTCCTTAGTCTGTTTAGAGCATATATAAAGCTTTGAGTTGAGTGTAACAACCAATAAAAAGGAGGGAGTGTATTGTTGAGGGTGATGGTCTGATGGAGGTTCTTTTAATTTGACTAAGACATATAGTTATGCCATTTTGAATTAGTTAGTGATGGTGAAATCCTCCTGACTCATTAAGGAGATGTCTCTATTAGCCTTTGAATCAGGGACATTATTCTTTTTAAATATGTGCAAAGTAACTTCCCCTATCTTATGAAAAGAAGAAACAACTTATTTCTATTCACCTTGTTCCTTATCTATTATGATGAACTGATTTGGCCCTATTAAATTAGTTAAGCTTTGGTCCCTGGTACCTGGGTAGTACTCACATCTCCTTTAATGTCTTCCTCTATCAAAGAATGTTCATCTGGGATAAAAGTGAGTCAAAGTTTTACTTTCGATTATTGCATGTTGTTTCTAATCTAAATTATAGGTCCTATTATCTTAATCATTACAAAATATTAGTGATTTATGGTAAAAGTGGAAGGAACTTACTGTGGTGCTACATTGTGTTAGGTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAGATAGCTTACAGACGAAGAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAACTGAA</genome_strand>
        <mrna_strand>CTCACTTCTCTTTTTCTTCTTCTCTTTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAAATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAAAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCAAGAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAATTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAAATAGCTTACAGACGAAAAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E725323" ref_strand="+" ref_description="SGN-E725323 [FC26DA09]">
      <seq>ttctctttttcttcttctctctcgtgacccattagtcttctcctttatttctacttcttctggatttttccgtcacgggaatcttgaaattgcccataaataattattcactctgttgttacttttcctaaatttttgaaaaaaaattgtgaatgttttgagttaatgctgaaaattgtttgatacccagttttctccgtgataaagggagaaagaatccgtgattttttttctttttcaactttgctagttgataaaaagagtgttttttttttcgaagaagagtcggaaaattgaaaaaatggcttcaattgatgcccaattgaggctattggcccccccgaaagtgtcaaaggatgataaccttgggaaatatgatgctttgttgcttgacaaatttcttgatattctgcgggatttgcatgaaaagaatattcaaaaaacggttcaaaattgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="23072" stop="24117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23372" g_stop="23815" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E725323" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23372" e_stop="23815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTG-AAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACG</genome_strand>
        <mrna_strand>TTCTCTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGAGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAGAAGAGTCGGAAAATTGAAAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCCCCCCCGAAAGTGTCAAAGGATGATAACCTTGGGAAATATGATGCTTTGTTGCTTGACAAATTTCTTGATATTCTGCGGGATTTGCATGAAAAGAATATTCAAAAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E736770" ref_strand="+" ref_description="SGN-E736770 [LC07AE07]">
      <seq>ctttttcttcttctctctcgtgacccattcctctaatactttatttctacttcttctggatttttccgtcacgggaatcttgaaattgcccataaataattatcccctcatgttgttacttttcctaaatttttgaaaaaaattgtgaatgttttgagttaatgctgaaaattgtttgatacccagttttctccgtgataaagggtgaaagaatccgtgattttttttctttttcaactttgctagttgataaaaagagtgttttttttttctaagatgagtcggaaaattgaaaaaatggcttcaattgatgcccaattgaggctattggcaccaccaaaagtgtcaaaggatgataagcttgtggagtatgatgctttgttgcttgacaaatttcttgatattctgcaggatttgcatggagaggatattcgaaaaacggttcaaaattgttatgaactatctgctgaatatgaagggaaccttgacccacttaatttggaagagcttgggagtatgcttaccagtttggatgctggggattccattgtactcaccaaagccttttctaacatgcttaacttgggaaaccttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="23076" stop="25494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23376" g_stop="23815" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23816" i_stop="25038" i_length="1223">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25039" g_stop="25194" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="597" r_length="156" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E736770" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23376" e_stop="23815"/>
          <exon e_start="25039" e_stop="25194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTC-TGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACGGTATTTTTAGTTTGTTTTTTAAAGTTTTTTTTGTGTTTTTTCATACTTCTGGTGAAACCCTTTGTTGGGTTTCTTAATGATTTGTGGTTTTGAATGCAGTAGGGTTATTGTACATTTTGCTTAGTTTTGTTGGTACATAGTTTAATTTCCTGTTTATTAACTTCTGTTGAACCCCTTTGCTGTGTTTTTTTTTCTTCATAATTTATGGTTTGAATGCAGTATTCTAATCGTATGTTTTGCTTAATTTTGTTGGCACGTGGTTTAATGTTGTGTTTATCAGCTCCTACTGTAATTCTGTTGATGTTTATGTGGTGTGAGTAGAAAAGAGTGGTTCTTTATTCATTGTTTATGGTTTGAATGCCTTAGACTAGTTTCCATTATACCAAGTTTTGTCAGTTCGTAGTAATCTTTATTGTTGAACTCTTGTTTCTTCACGTTCTTTTGTTGTGTTTATGCGGTGAGTGGGGAAAAGGCTGGTACTTTATTAATATTGTGGTATGGATGCTCTAGGCTGATTTCCAGTATGCTTGATTTTGTAAGTTCTTGACTAGTTTATACAAACAATTTAAACCCTTTTTTTTGGGTGAATGGACTCTTTAAGATTGGTAGTGTGTTCATAATTTGTGGTTTCAATCACTAGTCAATTCTCATAATGTGTTATTTTTTTAGTCCTTAGTCTGTTTAGAGCATATATAAAGCTTTGAGTTGAGTGTAACAACCAATAAAAAGGAGGGAGTGTATTGTTGAGGGTGATGGTCTGATGGAGGTTCTTTTAATTTGACTAAGACATATAGTTATGCCATTTTGAATTAGTTAGTGATGGTGAAATCCTCCTGACTCATTAAGGAGATGTCTCTATTAGCCTTTGAATCAGGGACATTATTCTTTTTAAATATGTGCAAAGTAACTTCCCCTATCTTATGAAAAGAAGAAACAACTTATTTCTATTCACCTTGTTCCTTATCTATTATGATGAACTGATTTGGCCCTATTAAATTAGTTAAGCTTTGGTCCCTGGTACCTGGGTAGTACTCACATCTCCTTTAATGTCTTCCTCTATCAAAGAATGTTCATCTGGGATAAAAGTGAGTCAAAGTTTTACTTTCGATTATTGCATGTTGTTTCTAATCTAAATTATAGGTCCTATTATCTTAATCATTACAAAATATTAGTGATTTATGGTAAAAGTGGAAGGAACTTACTGTGGTGCTACATTGTGTTAGGTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCT</genome_strand>
        <mrna_strand>CTTTTTCTTCTTCTCTCTCGTGACCCATTCCTCTAATACTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATCCCCTCATGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCTAAGATGAGTCGGAAAATTGAAAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCACCAAAAGTGTCAAAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAAATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAAAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAATTGTTATGAACTATCTGCTGAATATGAAGGGAACCTTGACCCACTTAATTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTACTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGAAACCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E737542" ref_strand="+" ref_description="SGN-E737542 [LC10BB02]">
      <seq>cttctctctcgtgacccattagtcttctcctttatttctacttcttctggatttttccgtcacgggaatcttgaaattgcccataaataattattcactctgttgttacttttcctaaatttttgaaaaaaattgtgaatgttttgagttaatgctgaaaattgtttgatacccagttttctccgtgataaagggtgaaagaatccgtgattttttttctttttcaactttgctagttgataaaaagagtgttttttttttcgaagatgagtcggaaaattgaaaaaatggcttcaattgatgcccaattgaggctattggcaccagcgaaagtgtcagaggatgataagcttgtggagtatgatgctttgttgcttgacagatttcttgatattctgcaggatttgcatggagaggatattcgagaaacggttcaagattgttatgaactatctgctgaatatgaagggaaacatgacccacataagttggaagagcttgggagtatgcttaccagtttggatgctggggattccattgtagtcaccaaagccttttctaacatgcttaacttgggtaaccttgctgaagaggttcaaatagcttacagacaaagaagtaagctaaaaaagcgtgatttttcggatgaggcttctgcactaactgaatcaaacattgaagagactttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="23085" stop="25597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23385" g_stop="23815" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23816" i_stop="25038" i_length="1223">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25039" g_stop="25297" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="690" r_length="259" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E737542" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23385" e_stop="23815"/>
          <exon e_start="25039" e_stop="25297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACGGTATTTTTAGTTTGTTTTTTAAAGTTTTTTTTGTGTTTTTTCATACTTCTGGTGAAACCCTTTGTTGGGTTTCTTAATGATTTGTGGTTTTGAATGCAGTAGGGTTATTGTACATTTTGCTTAGTTTTGTTGGTACATAGTTTAATTTCCTGTTTATTAACTTCTGTTGAACCCCTTTGCTGTGTTTTTTTTTCTTCATAATTTATGGTTTGAATGCAGTATTCTAATCGTATGTTTTGCTTAATTTTGTTGGCACGTGGTTTAATGTTGTGTTTATCAGCTCCTACTGTAATTCTGTTGATGTTTATGTGGTGTGAGTAGAAAAGAGTGGTTCTTTATTCATTGTTTATGGTTTGAATGCCTTAGACTAGTTTCCATTATACCAAGTTTTGTCAGTTCGTAGTAATCTTTATTGTTGAACTCTTGTTTCTTCACGTTCTTTTGTTGTGTTTATGCGGTGAGTGGGGAAAAGGCTGGTACTTTATTAATATTGTGGTATGGATGCTCTAGGCTGATTTCCAGTATGCTTGATTTTGTAAGTTCTTGACTAGTTTATACAAACAATTTAAACCCTTTTTTTTGGGTGAATGGACTCTTTAAGATTGGTAGTGTGTTCATAATTTGTGGTTTCAATCACTAGTCAATTCTCATAATGTGTTATTTTTTTAGTCCTTAGTCTGTTTAGAGCATATATAAAGCTTTGAGTTGAGTGTAACAACCAATAAAAAGGAGGGAGTGTATTGTTGAGGGTGATGGTCTGATGGAGGTTCTTTTAATTTGACTAAGACATATAGTTATGCCATTTTGAATTAGTTAGTGATGGTGAAATCCTCCTGACTCATTAAGGAGATGTCTCTATTAGCCTTTGAATCAGGGACATTATTCTTTTTAAATATGTGCAAAGTAACTTCCCCTATCTTATGAAAAGAAGAAACAACTTATTTCTATTCACCTTGTTCCTTATCTATTATGATGAACTGATTTGGCCCTATTAAATTAGTTAAGCTTTGGTCCCTGGTACCTGGGTAGTACTCACATCTCCTTTAATGTCTTCCTCTATCAAAGAATGTTCATCTGGGATAAAAGTGAGTCAAAGTTTTACTTTCGATTATTGCATGTTGTTTCTAATCTAAATTATAGGTCCTATTATCTTAATCATTACAAAATATTAGTGATTTATGGTAAAAGTGGAAGGAACTTACTGTGGTGCTACATTGTGTTAGGTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAGATAGCTTACAGACGAAGAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAACTGAATCAGACATTGAAGAGACTTTTA</genome_strand>
        <mrna_strand>CTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAAAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAAATAGCTTACAGACAAAGAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAACTGAATCAAACATTGAAGAGACTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E736428" ref_strand="+" ref_description="SGN-E736428 [LC05CH11]">
      <seq>cgctctcgtgacccattagtcttctcctttatttctacttcttctggatttttccgtcacgggaatcttgaaattgcccataaataattattcactctgttgttacttttcctaaatttttgaaaaaaattgtgaatgttttgagttaatgctgaaaattgtttgatacccagttttctccgtgataaagggtgaaagaatccgtgattttttttctttttcaactttgctagttgataaaaagagtgtttttttttttcaaaaatgagtcggaaaattgaaaaaatggcttcaattgatgcccaattgaggctattggcaccagcaaaattgtcaaaggatgataagcttgtgaagaatgatgctttgttgcttgacaaatttcttgatattctgcaggatttgcatggaaaggatattcaaaaaacggttcaaaattgttatgaactatctgctgaatatgaagggaaacttgacccccttaagttggaaaagcttgggagtatgcttaccagtttggatgctggggattccattgtagccaccaaagccttttctaacatgcttaacttgggaaaccttgctgaaaaggttcaaataccttacaaacaaaaaagtaacctaaaaaagcgtgatttttcggatgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="23088" stop="25559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23388" g_stop="23815" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23816" i_stop="25038" i_length="1223">
            <donor d_prob="0.980" d_score="0.92"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25039" g_stop="25259" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="650" r_length="221" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E736428" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23388" e_stop="23815"/>
          <exon e_start="25039" e_stop="25259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTG-TTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACGGTATTTTTAGTTTGTTTTTTAAAGTTTTTTTTGTGTTTTTTCATACTTCTGGTGAAACCCTTTGTTGGGTTTCTTAATGATTTGTGGTTTTGAATGCAGTAGGGTTATTGTACATTTTGCTTAGTTTTGTTGGTACATAGTTTAATTTCCTGTTTATTAACTTCTGTTGAACCCCTTTGCTGTGTTTTTTTTTCTTCATAATTTATGGTTTGAATGCAGTATTCTAATCGTATGTTTTGCTTAATTTTGTTGGCACGTGGTTTAATGTTGTGTTTATCAGCTCCTACTGTAATTCTGTTGATGTTTATGTGGTGTGAGTAGAAAAGAGTGGTTCTTTATTCATTGTTTATGGTTTGAATGCCTTAGACTAGTTTCCATTATACCAAGTTTTGTCAGTTCGTAGTAATCTTTATTGTTGAACTCTTGTTTCTTCACGTTCTTTTGTTGTGTTTATGCGGTGAGTGGGGAAAAGGCTGGTACTTTATTAATATTGTGGTATGGATGCTCTAGGCTGATTTCCAGTATGCTTGATTTTGTAAGTTCTTGACTAGTTTATACAAACAATTTAAACCCTTTTTTTTGGGTGAATGGACTCTTTAAGATTGGTAGTGTGTTCATAATTTGTGGTTTCAATCACTAGTCAATTCTCATAATGTGTTATTTTTTTAGTCCTTAGTCTGTTTAGAGCATATATAAAGCTTTGAGTTGAGTGTAACAACCAATAAAAAGGAGGGAGTGTATTGTTGAGGGTGATGGTCTGATGGAGGTTCTTTTAATTTGACTAAGACATATAGTTATGCCATTTTGAATTAGTTAGTGATGGTGAAATCCTCCTGACTCATTAAGGAGATGTCTCTATTAGCCTTTGAATCAGGGACATTATTCTTTTTAAATATGTGCAAAGTAACTTCCCCTATCTTATGAAAAGAAGAAACAACTTATTTCTATTCACCTTGTTCCTTATCTATTATGATGAACTGATTTGGCCCTATTAAATTAGTTAAGCTTTGGTCCCTGGTACCTGGGTAGTACTCACATCTCCTTTAATGTCTTCCTCTATCAAAGAATGTTCATCTGGGATAAAAGTGAGTCAAAGTTTTACTTTCGATTATTGCATGTTGTTTCTAATCTAAATTATAGGTCCTATTATCTTAATCATTACAAAATATTAGTGATTTATGGTAAAAGTGGAAGGAACTTACTGTGGTGCTACATTGTGTTAGGTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAGATAGCTTACAGACGAAGAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGC</genome_strand>
        <mrna_strand>CGCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTTCAAAAATGAGTCGGAAAATTGAAAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCAAAATTGTCAAAGGATGATAAGCTTGTGAAGAATGATGCTTTGTTGCTTGACAAATTTCTTGATATTCTGCAGGATTTGCATGGAAAGGATATTCAAAAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAATTGTTATGAACTATCTGCTGAATATGAAGGGAAACTTGACCCCCTTAAGTTGGAAAAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGCCACCAAAGCCTTTTCTAACATGCTTAACTTGGGAAACCTTGCTGAAAAGGTTCAAATACCTTACAAACAAAAAAGTAACCTAAAAAAGCGTGATTTTTCGGATGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E335268" ref_strand="+" ref_description="SGN-E335268 [cTOE-1-I10]">
      <seq>atttctacttcttctggatttttccgtcacgggaatcttgaaattgcccataaataattattcactctgttgttacttttcctaaatttttgaaaaaaattgtgaatgttttgagttaatgctgaaaattgtttgatacccagttttctccgtgataaagggtgaaagaatccgtgatttttttctttttcaactttgctagttgataaaaagagtgtttttttttttcgaagatgagtcggaaaattgagaaaatggcttcaattgatgcccaattgaggctattggcaccagcgaaagtgtcagaggatgataagcttgtggagtatgatgctttgttgcttgacagatttcttgatattctgcaggatttgcatggagaggatattcgagaaacggttcaagattgttatgaactatctgctgaatatgaagggaaacatgacccacataagttggaagagcttgggagtatgcttaccagtttggatgctggggattccattgtagtcaccaaagccttttctaacatgcttaacttgggtaaccttgctgaagaggttcagatagcttacagacgaagaagtaagctaaaaaagcgtgatttttcggatgaggcttctgcactaactgaatcagacattgaagagacttttaagaagctcgtcggacagctaaacaaatcaccccaagaaagtttttgatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="23118" stop="25648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23418" g_stop="23815" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23816" i_stop="25038" i_length="1223">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25039" g_stop="25348" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="709" r_length="311" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E335268" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23418" e_stop="23815"/>
          <exon e_start="25039" e_stop="25348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTG-TTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACGGTATTTTTAGTTTGTTTTTTAAAGTTTTTTTTGTGTTTTTTCATACTTCTGGTGAAACCCTTTGTTGGGTTTCTTAATGATTTGTGGTTTTGAATGCAGTAGGGTTATTGTACATTTTGCTTAGTTTTGTTGGTACATAGTTTAATTTCCTGTTTATTAACTTCTGTTGAACCCCTTTGCTGTGTTTTTTTTTCTTCATAATTTATGGTTTGAATGCAGTATTCTAATCGTATGTTTTGCTTAATTTTGTTGGCACGTGGTTTAATGTTGTGTTTATCAGCTCCTACTGTAATTCTGTTGATGTTTATGTGGTGTGAGTAGAAAAGAGTGGTTCTTTATTCATTGTTTATGGTTTGAATGCCTTAGACTAGTTTCCATTATACCAAGTTTTGTCAGTTCGTAGTAATCTTTATTGTTGAACTCTTGTTTCTTCACGTTCTTTTGTTGTGTTTATGCGGTGAGTGGGGAAAAGGCTGGTACTTTATTAATATTGTGGTATGGATGCTCTAGGCTGATTTCCAGTATGCTTGATTTTGTAAGTTCTTGACTAGTTTATACAAACAATTTAAACCCTTTTTTTTGGGTGAATGGACTCTTTAAGATTGGTAGTGTGTTCATAATTTGTGGTTTCAATCACTAGTCAATTCTCATAATGTGTTATTTTTTTAGTCCTTAGTCTGTTTAGAGCATATATAAAGCTTTGAGTTGAGTGTAACAACCAATAAAAAGGAGGGAGTGTATTGTTGAGGGTGATGGTCTGATGGAGGTTCTTTTAATTTGACTAAGACATATAGTTATGCCATTTTGAATTAGTTAGTGATGGTGAAATCCTCCTGACTCATTAAGGAGATGTCTCTATTAGCCTTTGAATCAGGGACATTATTCTTTTTAAATATGTGCAAAGTAACTTCCCCTATCTTATGAAAAGAAGAAACAACTTATTTCTATTCACCTTGTTCCTTATCTATTATGATGAACTGATTTGGCCCTATTAAATTAGTTAAGCTTTGGTCCCTGGTACCTGGGTAGTACTCACATCTCCTTTAATGTCTTCCTCTATCAAAGAATGTTCATCTGGGATAAAAGTGAGTCAAAGTTTTACTTTCGATTATTGCATGTTGTTTCTAATCTAAATTATAGGTCCTATTATCTTAATCATTACAAAATATTAGTGATTTATGGTAAAAGTGGAAGGAACTTACTGTGGTGCTACATTGTGTTAGGTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAGATAGCTTACAGACGAAGAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAACTGAATCAGACATTGAAGAGACTTTTAAGAAGCTCGTCGGACAGCTAAACAAATCACCCCAAG-AAGTTTTTGATGCTT</genome_strand>
        <mrna_strand>ATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGA-TTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAGATAGCTTACAGACGAAGAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAACTGAATCAGACATTGAAGAGACTTTTAAGAAGCTCGTCGGACAGCTAAACAAATCACCCCAAGAAAGTTTTTGATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E739413" ref_strand="+" ref_description="SGN-E739413 [LC17BD12]">
      <seq>caatagtgttttttttttcgaagatgagtcggaaaattgagaaaatggcttcaattgatgcccaattgaggctattggcaccagcgaaagtgtcagaggatgataagcttgtggagtatgatgctttgttgcttgacagatttcttgatattctgcaggatttgcatggagaggatattcgagaaacggttcaagattgttatgaactatctgctgaatatgaagggaaacatgacccacataagttggaagagcttgggagtatgcttaccagtttggatgctggggattccattgtagtcaccaaagccttttctaacatgcttaacttgggtaaccttgctgaagaggttcaaatagcttacagacgaagaagtaagctaaaaaagcgtgatttttcggatgaggcttctgcactaactgaatcagacattgaagagacttttaagaagctcgtcggacagctaaacaaatcaccccaagaagtttttgatgctttgaagaaccagaccgtggacttggtgctaacagcacatcctacccagtctgttcgtaggtctttgcttcaaaagcatgcaaggattcgtgattgtatgacgcagttgtacgccaaagatattactcctgatgataagcaggagctagacgaggctctacaaagagagatacaagcagcctttcgcacagatgaaatcaggaggactccaccaactccacaaaatgagatgagggcggggatgagttacttccatgagacaatatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="23329" stop="26946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23628" g_stop="23815" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23816" i_stop="25038" i_length="1223">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25039" g_stop="25430" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="580" r_length="392" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25431" i_stop="25714" i_length="284">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25715" g_stop="25799" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="665" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25800" i_stop="26545" i_length="746">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26546" g_stop="26646" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="766" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E739413" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23628" e_stop="23815"/>
          <exon e_start="25039" e_stop="25430"/>
          <exon e_start="25715" e_stop="25799"/>
          <exon e_start="26546" e_stop="26646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACGGTATTTTTAGTTTGTTTTTTAAAGTTTTTTTTGTGTTTTTTCATACTTCTGGTGAAACCCTTTGTTGGGTTTCTTAATGATTTGTGGTTTTGAATGCAGTAGGGTTATTGTACATTTTGCTTAGTTTTGTTGGTACATAGTTTAATTTCCTGTTTATTAACTTCTGTTGAACCCCTTTGCTGTGTTTTTTTTTCTTCATAATTTATGGTTTGAATGCAGTATTCTAATCGTATGTTTTGCTTAATTTTGTTGGCACGTGGTTTAATGTTGTGTTTATCAGCTCCTACTGTAATTCTGTTGATGTTTATGTGGTGTGAGTAGAAAAGAGTGGTTCTTTATTCATTGTTTATGGTTTGAATGCCTTAGACTAGTTTCCATTATACCAAGTTTTGTCAGTTCGTAGTAATCTTTATTGTTGAACTCTTGTTTCTTCACGTTCTTTTGTTGTGTTTATGCGGTGAGTGGGGAAAAGGCTGGTACTTTATTAATATTGTGGTATGGATGCTCTAGGCTGATTTCCAGTATGCTTGATTTTGTAAGTTCTTGACTAGTTTATACAAACAATTTAAACCCTTTTTTTTGGGTGAATGGACTCTTTAAGATTGGTAGTGTGTTCATAATTTGTGGTTTCAATCACTAGTCAATTCTCATAATGTGTTATTTTTTTAGTCCTTAGTCTGTTTAGAGCATATATAAAGCTTTGAGTTGAGTGTAACAACCAATAAAAAGGAGGGAGTGTATTGTTGAGGGTGATGGTCTGATGGAGGTTCTTTTAATTTGACTAAGACATATAGTTATGCCATTTTGAATTAGTTAGTGATGGTGAAATCCTCCTGACTCATTAAGGAGATGTCTCTATTAGCCTTTGAATCAGGGACATTATTCTTTTTAAATATGTGCAAAGTAACTTCCCCTATCTTATGAAAAGAAGAAACAACTTATTTCTATTCACCTTGTTCCTTATCTATTATGATGAACTGATTTGGCCCTATTAAATTAGTTAAGCTTTGGTCCCTGGTACCTGGGTAGTACTCACATCTCCTTTAATGTCTTCCTCTATCAAAGAATGTTCATCTGGGATAAAAGTGAGTCAAAGTTTTACTTTCGATTATTGCATGTTGTTTCTAATCTAAATTATAGGTCCTATTATCTTAATCATTACAAAATATTAGTGATTTATGGTAAAAGTGGAAGGAACTTACTGTGGTGCTACATTGTGTTAGGTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAGATAGCTTACAGACGAAGAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAACTGAATCAGACATTGAAGAGACTTTTAAGAAGCTCGTCGGACAGCTAAACAAATCACCCCAAGAAGTTTTTGATGCTTTGAAGAACCAGACCGTGGACTTGGTGCTAACAGCACATCCTACCCAGTCTGTTCGTAGGTCTTTGCTTCAAAAGCATGCAAGGTAAGTTACCATTGCTGAAGTTAACAGAAAATGTGTGCTGAAATAACAGCATATCCTATTCAATCTGTTTGTGGGGCTGTGCTGGCAAAAGCTCCATACTTTTTGTAGGTTACGTAAATATAAGTTTATTTCTGAAGGGATAAAAAGAAGATGAAAGTAAGGAGACATACTTTTTGTTCAATTTATCGATGTTTCCATCTAGAGAGCAACACTTTTTTTTTTCTTTCCATCTACTTATTCTTAACTGGACAAGATAAGTTTCTCATTTCCCACTTGCTGTCCAGGATTCGTGATTGTATGACGCAGTTGTACGCCAAAGATATTACTCCTGATGATAAGCAGGAGCTAGACGAGGCTCTACAAAGAGAGGTATGAAGTTCATAGTGCTGGTTTTTCTTGTCGTCTTCTTCTCTTTCTATCATTCCAATTCCCCCCATTTCAGTAAGGATGTAATTTTATGTTTTAAAAAAGGCTTAAATTTTATTTGGTATACGAAGTTAGTGTATAGAAATGTTGTTTAGTGAACTTGTGCTAAGCTGAAGTGGATGTGAGGAAACGCCTTCAAGACCGGTGCTTTAGTAAATCTCTGCTGGTTGTAGAGTATTCTCTTATTGTGTTCACTCCCCTGGTGCATAAATATTGATATTGGAGCATCTATCTTCCTTCTTCATGTTAGGCAAAGCTGATATATAGAGCTGATAACAAAACTCGGATAGGAAGATCGTTAGTACATGGTAAGAATATAGGTTCAATTGTTAAAGAAGCTAGACCTTTCAGGAACCATATCTTAGCTTTTAAATGGGAAGAAAGAGATTCACCTTTGTAGAGGTGTTTAAGTTGCCAGATCACCTTTACTTTTGTGCATTTAAAAGTTTAGAAGAGTTGGCAGGTATTTAATTTTTAAAAAAAGAATTAATAAGGAGAGAATGTACTAGAATCCGCTAACAGGTGTCAGAACTATTTGATTTCTATATTTTTACTACTCATGCTTGCCCTTTAACGTGATTTTGTGTGTATTAAGCATTGATAGAATGTCTCATTAGTCATCAATCCTCTGCACATAGAATATCAACAATTATAAATTCCTTGTGACTCTTCTCTTTTGTTGTATACAGATACAAGCAGCCTTTCGCACAGATGAAATCAGGAGGACTCCACCAACTCCACAAGATGAGATGAGGGCGGGGATGAGTTACTTCCATGAGACAATATGGAA</genome_strand>
        <mrna_strand>CAATAGTGTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAAATAGCTTACAGACGAAGAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAACTGAATCAGACATTGAAGAGACTTTTAAGAAGCTCGTCGGACAGCTAAACAAATCACCCCAAGAAGTTTTTGATGCTTTGAAGAACCAGACCGTGGACTTGGTGCTAACAGCACATCCTACCCAGTCTGTTCGTAGGTCTTTGCTTCAAAAGCATGCAAG............................................................................................................................................................................................................................................................................................GATTCGTGATTGTATGACGCAGTTGTACGCCAAAGATATTACTCCTGATGATAAGCAGGAGCTAGACGAGGCTCTACAAAGAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAGCAGCCTTTCGCACAGATGAAATCAGGAGGACTCCACCAACTCCACAAAATGAGATGAGGGCGGGGATGAGTTACTTCCATGAGACAATATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E738601" ref_strand="+" ref_description="SGN-E738601 [LC14BB04]">
      <seq>cctaaattcctacgccgtgttgacactgctttgaagaatattggaataaatgaacgtgttccctacaatgcccctctcattcagttctcttcttggatgggtggtgatcgagatggcaaccctagagtaaccccggaagtgacaagagatgtgtgcttattggctagaatgatggctgcaaatctgtatttctctcagattgaggatcttatgtttgagctttcaatgtggcgatgcaatgatgagctccgtgtccgtgcagaagaacttcataggacttccaaaagagatgcaaagcactacattgaattttggaagaaaattccaccgaatgagccctaccgtgttcttcttgctgatgtgagagataggttatataatacacaggaacgagctcgtcagttactagccaatgggtattctgatgttcctgaggagtcgacattcacaaatcttgaacagtttctggaacctctggagctgtgctatagatctctatgcgcttgtggtgacagaccaattgcagatggaagccttcttgattttttaaggcaagtgtccacctttggtctgtcgcttgtgagacttgatattcggcaagagtcagatagacacactgatgttctagatgttataacaaggcacgtgggtgttggctcctataaagaatggtctgaagagaagagacaggaatggctcttatctgaactaagtggcaagcgtccactttttggacctgatctccctaaaactgatgaagtcgctgatgttttggatacctttcatgtcatctccgaacttcccgccgacagtttcggtgcttatataatttcgatggccacggcaccctctgatgtgcttgctgttgagcttttgcagcgtgaatgtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="26354" stop="29033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26654" g_stop="26768" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26769" i_stop="27168" i_length="400">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27169" g_stop="27272" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="219" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27273" i_stop="27366" i_length="94">
            <donor d_prob="0.675" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27367" g_stop="27454" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="307" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27455" i_stop="27644" i_length="190">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27645" g_stop="27799" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="462" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27800" i_stop="28303" i_length="504">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28304" g_stop="28733" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="892" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E738601" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26654" e_stop="26768"/>
          <exon e_start="27169" e_stop="27272"/>
          <exon e_start="27367" e_stop="27454"/>
          <exon e_start="27645" e_stop="27799"/>
          <exon e_start="28304" e_stop="28733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAATTCCTACGCCGTGTTGACACTGCTTTGAAGAATATTGGAATAAATGAACGTGTTCCCTACAATGCCCCTCTCATTCAGTTCTCTTCTTGGATGGGTGGTGATCGAGATGGTATGCCCTTTCTATACAAGTAGCATTGTCTTTTTTTTTGTTTCACTCATTGAAAGTCAGATTAAGCACATATTAGAAGGAACTAACACTGATACAAGCAGAACTTATAGTTGGTTTAAGATTCTTTAGTTTATTGGAATTCTCGAAGGTCAATGAGTTCGGTTTGTTTAGTTGATGTGTTCTCAATTCATTCACAATTTTGTAGTATCTGAAACATCATAGCTAGATGGTAAAATGGTACTTTTAAAGCTTTACAATATGCATTAGGTTAGAGCAGTAGAAGCATCTTACTTATGATTCTCAAGTGACATAAGAAAATATTCTCCTTGAAGCTCAATGTAATTGCATGCCAATTTTGAATGTTTTGTGAAGGCACCAACAAATTTTGATGTGCATGCAGGCAACCCTAGAGTAACCCCGGAAGTGACAAGAGATGTGTGCTTATTGGCTAGAATGATGGCTGCAAATCTGTATTTCTCTCAGATTGAGGATCTTATGTTTGAGGTGACAAATTGGCTACTGAATGTCGTTGCCTGCAATTTGCCTCCATCCTGTACTAAATTTTTTTGTCTTGCCCACTTTATCTTGCTTATGCCAGCTTTCAATGTGGCGATGCAATGATGAGCTCCGTGTCCGTGCAGAAGAACTTCATAGGACTTCCAAAAGAGATGCAAAGCACTACATTGGTATTTACCCCCGTTCTCTGTTCTGCTACCAGATTAGTTTTCTGAAAGTGTATTGGGTTGGAGCTCACATATCATTCTCTTCGGCCTTACCTTTCTCTTTTTATGATTATTGTTGCTAATATTCTATGTTTTCTCTCCCTCCTACCCTTCAACTACTAACTGTTTCTTCTTGCTTAATCTACTAATACAGAATTTTGGAAGAAAATTCCACCGAATGAGCCCTACCGTGTTCTTCTTGCTGATGTGAGAGATAGGTTATATAATACACAGGAACGAGCTCGTCAGTTACTAGCCAATGGGTATTCTGATGTTCCTGAGGAGTCGACATTCACAAATCTTGAACAGGTGTCCTTCAGAAACTCTTTTTATTTCTGCTCACCTCTTCAATGATATAGAAATTGTTAGTTTGACTTCCAAATTTACCTATGCTGAACAGATATCTTTTTCATTTCCAATATGTGTTGGCAATGATATTTCATCTAGGATTCATATGTGATTTTTAGTTATTTTTATTTGGATGTCTTAAGTAGCTAACTGATAGTCTATTGACTAAATGTTGAAGGACAGAACGAAAATAGTTTATGTAAGATAATGAGGAAACGAACTCAAGCGAGCTTTTGGAATTCTTGTTTGACAATATTCATCTTGCTTTAACGAAGTTCTAACATACTACACAACACCAATTTTGTGGGCCAAGTTCAGTTTTTTTTTAGGATTTTATATATCACCCAAATTAACGTGGTTCTCATTTCTCAAATGTTATTTCATGGCATTCAGATTCTGCTAATATGCATGCCAATTTCTGTATGATTTGAATATGTGAAGAAGTTGGTTGTCTTTATTCTGCAGTTTCTGGAACCTCTGGAGCTGTGCTATAGATCTCTATGCGCTTGTGGTGACAGACCAATTGCAGATGGAAGCCTTCTTGATTTTTTAAGGCAAGTGTCCACCTTTGGTCTGTCGCTTGTGAGACTTGATATTCGGCAAGAGTCAGATAGACACACTGATGTTCTAGATGTTATAACAAGGCACGTGGGTGTTGGCTCCTATAAAGAATGGTCTGAAGAGAAGAGACAGGAATGGCTCTTATCTGAACTAAGTGGCAAGCGTCCACTTTTTGGACCTGATCTCCCTAAAACTGATGAAGTCGCTGATGTTTTGGATACCTTTCATGTCATCTCCGAACTTCCCGCCGACAGTTTCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTTGAGCTTTTGCAGCGTGAATGTCATG</genome_strand>
        <mrna_strand>CCTAAATTCCTACGCCGTGTTGACACTGCTTTGAAGAATATTGGAATAAATGAACGTGTTCCCTACAATGCCCCTCTCATTCAGTTCTCTTCTTGGATGGGTGGTGATCGAGATG................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCCTAGAGTAACCCCGGAAGTGACAAGAGATGTGTGCTTATTGGCTAGAATGATGGCTGCAAATCTGTATTTCTCTCAGATTGAGGATCTTATGTTTGAG..............................................................................................CTTTCAATGTGGCGATGCAATGATGAGCTCCGTGTCCGTGCAGAAGAACTTCATAGGACTTCCAAAAGAGATGCAAAGCACTACATTG..............................................................................................................................................................................................AATTTTGGAAGAAAATTCCACCGAATGAGCCCTACCGTGTTCTTCTTGCTGATGTGAGAGATAGGTTATATAATACACAGGAACGAGCTCGTCAGTTACTAGCCAATGGGTATTCTGATGTTCCTGAGGAGTCGACATTCACAAATCTTGAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGGAACCTCTGGAGCTGTGCTATAGATCTCTATGCGCTTGTGGTGACAGACCAATTGCAGATGGAAGCCTTCTTGATTTTTTAAGGCAAGTGTCCACCTTTGGTCTGTCGCTTGTGAGACTTGATATTCGGCAAGAGTCAGATAGACACACTGATGTTCTAGATGTTATAACAAGGCACGTGGGTGTTGGCTCCTATAAAGAATGGTCTGAAGAGAAGAGACAGGAATGGCTCTTATCTGAACTAAGTGGCAAGCGTCCACTTTTTGGACCTGATCTCCCTAAAACTGATGAAGTCGCTGATGTTTTGGATACCTTTCATGTCATCTCCGAACTTCCCGCCGACAGTTTCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTTGAGCTTTTGCAGCGTGAATGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E740025" ref_strand="+" ref_description="SGN-E740025 [LC19DB02]">
      <seq>cactgatgttctagatgttataacaaggcacgtgggtgttggctcctataaagaatggtctgaagagaagagacaggaatggctcttatctgaactaagtggcaagcgtccactttttggacctgatctccctaaaactgatgaagtcgctgatgttttggatacctttcatgtcatctccgaacttcccgccgacagtttcggtgcttatataatttcgatggccacggcaccctctgatgtgcttgctgttgagcttttgcagcgtgaatgtcatgtaaaaagtccattgagggttgttccgttgtttgaaaagcttgctgatctcgagtctgcacctgcttctgttgctcggttgttctccatagattggtacagaaaccgtatcaatgggaaacaagaagttatgattgggtattctgattccggtaaggatgctggccgactatctgcagcttggcaattgtacaaggctcaagaggaacttgtaaaggtggcaaaagaatttggagtaaagctaacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28156" stop="29940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28456" g_stop="29302" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="847" r_length="847" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29303" i_stop="29584" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29585" g_stop="29640" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="848" r_stop="903" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E740025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28456" e_stop="29302"/>
          <exon e_start="29585" e_stop="29640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGATGTTCTAGATGTTATAACAAGGCACGTGGGTGTTGGCTCCTATAAAGAATGGTCTGAAGAGAAGAGACAGGAATGGCTCTTATCTGAACTAAGTGGCAAGCGTCCACTTTTTGGACCTGATCTCCCTAAAACTGATGAAGTCGCTGATGTTTTGGATACCTTTCATGTCATCTCCGAACTTCCCGCCGACAGTTTCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTTGAGCTTTTGCAGCGTGAATGTCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAG</genome_strand>
        <mrna_strand>CACTGATGTTCTAGATGTTATAACAAGGCACGTGGGTGTTGGCTCCTATAAAGAATGGTCTGAAGAGAAGAGACAGGAATGGCTCTTATCTGAACTAAGTGGCAAGCGTCCACTTTTTGGACCTGATCTCCCTAAAACTGATGAAGTCGCTGATGTTTTGGATACCTTTCATGTCATCTCCGAACTTCCCGCCGACAGTTTCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTTGAGCTTTTGCAGCGTGAATGTCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E275090" ref_strand="+" ref_description="SGN-E275090 [cLEN-9-O5]">
      <seq>gacaggaatggctcttatctgaactaagtggcaagcgtgcactttttggacctgatctccctaaaactgatgaagtcgctgatgttttggatacctttcatgtcatcttcgaacttgccgccgacagttgcggtgcttatataatttcgatggccacggcaccctctgatgtgcttgctgtcgagcttttgcagcgtgaatgtcatgtaaaaagtccattgagggttgttccggtgtttgaaaagcttgctgatctcgagtctgcacctgcttctgttgctcggttgttctccatagattggtccagaagccgtatcattgggaaacaagaagttatgattgggtattctgattccggtaaggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28227" stop="29193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28527" g_stop="28893" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E275090" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28527" e_stop="28893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGGAATGGCTCTTATCTGAACTAAGTGGCAAGCGTCCACTTTTTGGACCTGATCTCCCTAAAACTGATGAAGTCGCTGATGTTTTGGATACCTTTCATGTCATCTCCGAACTTCCCGCCGACAGTTTCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTTGAGCTTTTGCAGCGTGAATGTCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGC</genome_strand>
        <mrna_strand>GACAGGAATGGCTCTTATCTGAACTAAGTGGCAAGCGTGCACTTTTTGGACCTGATCTCCCTAAAACTGATGAAGTCGCTGATGTTTTGGATACCTTTCATGTCATCTTCGAACTTGCCGCCGACAGTTGCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTCGAGCTTTTGCAGCGTGAATGTCATGTAAAAAGTCCATTGAGGGTTGTTCCGGTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTCCAGAAGCCGTATCATTGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E737646" ref_strand="+" ref_description="SGN-E737646 [LC10CG09]">
      <seq>ctcttatctgaactaagtggcaagcgtccactttttggacctgatctccctaaaactgatgaagtcgctgatgttttggatacctttcatgtcatctccgaacttcccgccgacagtttcggtgcttatataatttcgatggccacggcaccctctgatgtgcttgctgttgagcttttgcagcgtgaatgtcatgtaaaaagtccattgagggttgttccgttgtttgaaaagcttgctgatctcgagtctgcacctgcttctgttgctcggttgttctccatagattggtacagaaaccgtatcaatgggaaacaagaagttatgattgggtattctgattccggtaaggatgctggccgactatctgcagcttggcaattgtacaaggctcaagaggaacttgtaaaggtggcaaaagaatttggagtaaagctaacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28238" stop="29340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28538" g_stop="29040" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E737646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28538" e_stop="29040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTATCTGAACTAAGTGGCAAGCGTCCACTTTTTGGACCTGATCTCCCTAAAACTGATGAAGTCGCTGATGTTTTGGATACCTTTCATGTCATCTCCGAACTTCCCGCCGACAGTTTCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTTGAGCTTTTGCAGCGTGAATGTCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTT</genome_strand>
        <mrna_strand>CTCTTATCTGAACTAAGTGGCAAGCGTCCACTTTTTGGACCTGATCTCCCTAAAACTGATGAAGTCGCTGATGTTTTGGATACCTTTCATGTCATCTCCGAACTTCCCGCCGACAGTTTCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTTGAGCTTTTGCAGCGTGAATGTCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E740087" ref_strand="+" ref_description="SGN-E740087 [LC20AC01]">
      <seq>gtcatctccgaacttcccgccgacagtttcggtgcttatataatttcgatggccacggcaccctctgatgtgcttgctgttgagcttttgcagcgtgaatgtcatgtaaaaagtccattgagggttgttccgttgtttgaaaagcttgctgatctcgagtctgcacctgcttctgttgctcggttgttctccatagattggtacagaaaccgtatcaatgggaaacaagaagttatgattgggtattctgattccggtaaggatgctggccgactatctgcagcttggcaattgtacaaggctcaagaggaacttgtaaaggtggcaaaagaatttggagtaaagctaacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggttttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28328" stop="30098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28628" g_stop="29302" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29303" i_stop="29584" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29585" g_stop="29798" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="890" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E740087" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28628" e_stop="29302"/>
          <exon e_start="29585" e_stop="29798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCTCCGAACTTCCCGCCGACAGTTTCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTTGAGCTTTTGCAGCGTGAATGTCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGG-TTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGT</genome_strand>
        <mrna_strand>GTCATCTCCGAACTTCCCGCCGACAGTTTCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTTGAGCTTTTGCAGCGTGAATGTCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E263301" ref_strand="+" ref_description="SGN-E263301 [cLEG-62-A22]">
      <seq>gacagtttcggtgcttatataatttcgatggccacggcaccctctgatgtgcttgctgttgagcttttgcagcgtgaatgtcatgtaaaaagtccattgagggttgttccgttgtttgaaaagcttgctgatctcgagtctgcacctgcttctgttgctcggttgttctccatagattggtacagaaaccgtatcaatgggaaacaagaagttatgattgggtattctgattccggtaaggatgctggccgactatctgcagcttggcaattgtacaaggctcaagaggaacttgtaaaggtggcaaaagaatttggagtaaagctaacaatgttccatggccgaggtgggactgntaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaggaagccaagtgggtgggatgaatctcttcgagctattccatggatctttgcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28349" stop="29996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28649" g_stop="29302" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29303" i_stop="29584" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29585" g_stop="29696" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="766" r_length="111" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E263301" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28649" e_stop="29302"/>
          <exon e_start="29585" e_stop="29696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTTTCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTTGAGCTTTTGCAGCGTGAATGTCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTG-TAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGA</genome_strand>
        <mrna_strand>GACAGTTTCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTTGAGCTTTTGCAGCGTGAATGTCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGNTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCC-AAAGGAAGCCAAGTGGGTGGGATGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E260643" ref_strand="+" ref_description="SGN-E260643 [cLEG-54-M3]">
      <seq>gacagtttcggtgcttatataatttcgatggccacggcaccctctgatgtgcttgctgttgagcttttgcagcgtgaatgtcatgtaaaaagtccattgagggttgttccgttgtttgaaaagcttgctgatctcgagtctgcacctgcttctgttgctcggttgttctccatagattggtacagaaaccgtatcaatgggaaacaagaagttatgattgggtattctgattccggtaaggatgctggccgactatctgcagcttggcaattgtacaaggctcaagaggaacttgtaaaggtggcaaaagaatttggagtaaagctaacaatgttccatggccgaggtgggactgaggaannggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttaaaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacaaaagagtatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28349" stop="29557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28649" g_stop="29257" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E260643" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28649" e_stop="29257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTTTCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTTGAGCTTTTGCAGCGTGAATGTCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAA--GGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGG</genome_strand>
        <mrna_strand>GACAGTTTCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTTGAGCTTTTGCAGCGTGAATGTCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTG-AGGAANNGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAAAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACAAAAGAGTATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E315384" ref_strand="+" ref_description="SGN-E315384 [cTOA-22-G21]">
      <seq>tcatgtaaaaagtccattgagggttgttccgttgtttgaaaagcttgctgatctcgagtctgcacctgcttctgttgctcggttgttctccatagattggtacagaaaccgtatcaatgggaaacaagaagttatgattgggtattctgattccggtaaggatgctggccgactatctgcagcttggcaattgtacaaggctcaagaggaacttgtaaaggtggcaaaagaatttggagtaaagctaacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28429" stop="29999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28729" g_stop="29302" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29303" i_stop="29584" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29585" g_stop="29699" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="689" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E315384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28729" e_stop="29302"/>
          <exon e_start="29585" e_stop="29699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTC</genome_strand>
        <mrna_strand>TCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E285940" ref_strand="+" ref_description="SGN-E285940 [cLES-13-I18]">
      <seq>tcatgtaaaaagtccattgagggttgttccgttgtttgaaaagcttgctgatctcgagtctgcacctgcttctgttgctcggttgttctccatagattggtacagaaaccgtatcaatgggaaacaagaagttatgattgggtattctgattccggtaaggatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28429" stop="29194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28729" g_stop="28894" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E285940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28729" e_stop="28894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCT</genome_strand>
        <mrna_strand>TCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E739386" ref_strand="+" ref_description="SGN-E739386 [LC17BA02]">
      <seq>ccaatcaagaagttatgattgggtattctgattccggtaaggatgctggccgactatctgcagcttggcaattgtacaaggctcaagaggaacttgtaaaggtggcaaaagaatttggagtaaagctaacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28550" stop="30426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28848" g_stop="29302" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29303" i_stop="29584" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29585" g_stop="29971" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="842" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29972" i_stop="30059" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30060" g_stop="30126" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="909" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E739386" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28848" e_stop="29302"/>
          <exon e_start="29585" e_stop="29971"/>
          <exon e_start="30060" e_stop="30126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATT</genome_strand>
        <mrna_strand>CCAATCAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E737335" ref_strand="+" ref_description="SGN-E737335 [LC09BE02]">
      <seq>cccttaaagaagttatgattgggtattctgattccggtaagccttctggccgactatctgcagcttggcaattgtacaaggctcaagaggaacttgcaaaggtggcaaaagaatttgcgagtaaagctaacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggcgaagttattgaacagtcatttggggaggaacacctgagctttaaaactcttccgcgtttcacaccagctacacttgagcatggaatgaaccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28554" stop="29486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28854" g_stop="29186" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="340" r_length="334" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E737335" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28854" e_stop="29186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTG-GAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCC</genome_strand>
        <mrna_strand>AAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGCCTTCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGCAAAGGTGGCAAAAGAATTTGCGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGCGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGAGCTTTAAAACTCTTCCGCGTTTCACACCAGCTACACTTGAGCATGGAATGAACCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E210310" ref_strand="+" ref_description="SGN-E210310 [cLEC-35-I10]">
      <seq>tggccgactatctgcagcttggcaattgtacaaggctcaagaggaacttgtaaaggtggcaaaagaatttggagtaaagctaacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28594" stop="29999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28894" g_stop="29302" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29303" i_stop="29584" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29585" g_stop="29699" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="524" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E210310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28894" e_stop="29302"/>
          <exon e_start="29585" e_stop="29699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTC</genome_strand>
        <mrna_strand>TGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E342401" ref_strand="+" ref_description="SGN-E342401 [cTOF-8-E11]">
      <seq>tggcaaaagaatttggagtaaagctaacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaagatataagaaatctgcaaatgctcaaggatatgtacaatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28650" stop="30108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28950" g_stop="29302" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29303" i_stop="29584" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29585" g_stop="29808" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="577" r_length="224" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E342401" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28950" e_stop="29302"/>
          <exon e_start="29585" e_stop="29808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATG</genome_strand>
        <mrna_strand>TGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAAGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E709358" ref_strand="+" ref_description="SGN-E709358 [FA51CE12]">
      <seq>taacaatgttccatggccgaggtgggactgtaggaaggggagggggtcccacccaccttgctattttatcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattacaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagcggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttacagtgacacttgacttgctcgaaatggtcttcactaagggagaccctggtattgctgcattgtatgataaactttttagtatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28674" stop="30204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28974" g_stop="29302" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29303" i_stop="29584" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29585" g_stop="29904" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="650" r_length="321" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E709358" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28974" e_stop="29302"/>
          <exon e_start="29585" e_stop="29904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAAC-TTTTAGTATCCGA</genome_strand>
        <mrna_strand>TAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTACAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGCGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTACAGTGACACTTGACTTGCTCGAAATGGTCTTCACTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTTAGTATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E276002" ref_strand="+" ref_description="SGN-E276002 [cLEN-12-P6]">
      <seq>tcacaacccccagacacaattcatggctcacttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28742" stop="30200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29042" g_stop="29302" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29303" i_stop="29584" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29585" g_stop="29900" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="577" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E276002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29042" e_stop="29302"/>
          <exon e_start="29585" e_stop="29900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTAT</genome_strand>
        <mrna_strand>TCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E275429" ref_strand="+" ref_description="SGN-E275429 [cLEN-10-B4]">
      <seq>ttcgtgtgactgttcaaggtgaagttattgaacagtcatttggggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttactgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28773" stop="30232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29073" g_stop="29302" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29303" i_stop="29584" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29585" g_stop="29932" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="578" r_length="348" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E275429" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29073" e_stop="29302"/>
          <exon e_start="29585" e_stop="29932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTG</genome_strand>
        <mrna_strand>TTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTACTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E726288" ref_strand="+" ref_description="SGN-E726288 [LA11BE10]">
      <seq>gggaggaacacctgtgctttagaactcttcagcgtttcacagcagctacacttgagcatggaatgaacccccctgtggctcctaatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggtttaagctaaggctattatgtatgtataataataagtgatatttgtctttcactttttataatcctatgtctgnntcagaataataatgatgagatgtttctgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28815" stop="30757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29115" g_stop="29302" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29303" i_stop="29584" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29585" g_stop="29971" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="575" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29972" i_stop="30059" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30060" g_stop="30462" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="978" r_length="403" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E726288" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>978</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29115" e_stop="29302"/>
          <exon e_start="29585" e_stop="29971"/>
          <exon e_start="30060" e_stop="30462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATA-TTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATT</genome_strand>
        <mrna_strand>GGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTTAAGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTTGTCTTTCACTTTTTAT-AATCCTATGTCTGNNTCAGAATAATAATGATGAGATGTTTCTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E551904" ref_strand="+" ref_description="SGN-E551904 [cTSB-2-D21]">
      <seq>aatccagagtggcgtgccctcttggatgagatgtctgttgttgctacgaaagagtatcggtctttagtgttccaggatccacgatttgttgaatacttccgccttgcaaccccagaattagaatatggtcgcatgaacattggaagtcgcccagccaaaaggaagccaagtggtgggattgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctgggtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28898" stop="30597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29198" g_stop="29302" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29303" i_stop="29584" i_length="282">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29585" g_stop="29971" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="492" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29972" i_stop="30059" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30060" g_stop="30298" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="731" r_length="239" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E551904" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29198" e_stop="29302"/>
          <exon e_start="29585" e_stop="29971"/>
          <exon e_start="30060" e_stop="30298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTTGTGAGTATATTCAAGTTACTTCATAAGTTGATTTGAACTGCTTTTGAATGACTCTTAATCATAATAGAAAAAGAGGTATAAGAAAAAAAAATCCAGAAACCATAAGATTCAAAGAATTGAAGGGGACACAAACAGTAGATTTAATTAGGTGAAAGCAGTCGGTTTAATAATTAGTCAAAGTAGGTATGAATGGCAATTGCATTTCAGACATTGATGACTTATTTGCCTTCAGCCCGATGCCTATGAAACTGAACTTCCTTTTTATGTTTGTCTAAAATGCAGGCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGA</genome_strand>
        <mrna_strand>AATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT..........................................................................................................................................................................................................................................................................................GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E735397" ref_strand="+" ref_description="SGN-E735397 [LC01BF12]">
      <seq>attgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaaggatttgagtgtgtgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29357" stop="30773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29657" g_stop="29971" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29972" i_stop="30059" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30060" g_stop="30477" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="733" r_length="418" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E735397" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29657" e_stop="29971"/>
          <exon e_start="30060" e_stop="30477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTT</genome_strand>
        <mrna_strand>ATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E736075" ref_strand="+" ref_description="SGN-E736075 [LC04BA03]">
      <seq>attgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaaggatttgagtgtgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29357" stop="30773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29657" g_stop="29971" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29972" i_stop="30059" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30060" g_stop="30475" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="731" r_length="416" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E736075" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29657" e_stop="29971"/>
          <exon e_start="30060" e_stop="30475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATT</genome_strand>
        <mrna_strand>ATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E736716" ref_strand="+" ref_description="SGN-E736716 [LC06DF08]">
      <seq>attgaatctcttcgagctattccatggatctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaaggatttgagtgtgtgaaaaaaaaaaanaaaaaaaaaaaaaacccttggggggggggccgggaccccatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29357" stop="30773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29657" g_stop="29971" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29972" i_stop="30059" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30060" g_stop="30472" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="728" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="737" polyA_stop="754"/>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E736716" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29657" e_stop="29971"/>
          <exon e_start="30060" e_stop="30472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTG</genome_strand>
        <mrna_strand>ATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E740064" ref_strand="+" ref_description="SGN-E740064 [LC19DG08]">
      <seq>atctttgcatggactcagacaaggtttcatctcccagtctggcttggctttggggctgcattcaagcacgttattgagaaggatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaggtctgaccttcacattgtagttggggtcacgaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaaggatttgagtgtgtgatttttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29384" stop="30780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29684" g_stop="29971" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29972" i_stop="30059" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30060" g_stop="30479" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="707" r_length="419" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="708" polyA_stop="723"/>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E740064" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29684" e_stop="29971"/>
          <exon e_start="30060" e_stop="30479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACC-TCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTTTG</genome_strand>
        <mrna_strand>ATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTG-AGGTCTGACCTTCACATTGTAGTTGGGGTCA-CGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E736192" ref_strand="+" ref_description="SGN-E736192 [LC04CG09]">
      <seq>cgatagagagagagatataagaaatctgcaaatgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29456" stop="30755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29752" g_stop="29971" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29972" i_stop="30059" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30060" g_stop="30455" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="616" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E736192" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29752" e_stop="29971"/>
          <exon e_start="30060" e_stop="30455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTG</genome_strand>
        <mrna_strand>CGATAGAGAGAGAGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E710210" ref_strand="+" ref_description="SGN-E710210 [FA54CF09]">
      <seq>atgctcaaggatatgtacaatggatggcctttctttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctatacaaggagatcatggaatcaagcaaacccagctgctgaattagtgaagctgaatcctaccagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29483" stop="30642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29783" g_stop="29971" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29972" i_stop="30059" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30060" g_stop="30342" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="473" r_length="284" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E710210" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29783" e_stop="29971"/>
          <exon e_start="30060" e_stop="30342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAA-CCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGC</genome_strand>
        <mrna_strand>ATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTATACAAGGAGATCATGGAATCAAGCAAACCCAGCTGCTGAATTAGTGAAGCTGAATCCTACCAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E288741" ref_strand="+" ref_description="SGN-E288741 [cLES-8-N12]">
      <seq>ttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctttctccttcatgttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29517" stop="30682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29817" g_stop="29971" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29972" i_stop="30059" i_length="88">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30060" g_stop="30382" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="478" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E288741" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29817" e_stop="29971"/>
          <exon e_start="30060" e_stop="30382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAAT</genome_strand>
        <mrna_strand>TTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAT........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E288650" ref_strand="+" ref_description="SGN-E288650 [cLES-8-N11]">
      <seq>ttagagtgacacttgacttgctcgaaatggtcttcgctaagggagaccctggtattgctgcattgtatgataaacttttagtatccgaagatctgtggccgcttggagagcgattgagatccaaatacgaagaaacaaagggctatctccttcaggttgctgggcacatggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgttagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggtatcaagcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29517" stop="30543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29817" g_stop="29971" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29972" i_stop="30059" i_length="88">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30060" g_stop="30243" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="339" r_length="184" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E288650" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29817" e_stop="29971"/>
          <exon e_start="30060" e_stop="30243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAAC</genome_strand>
        <mrna_strand>TTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTATCTCCTTCAG........................................................................................GTTGCTGGGCACATGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTTAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGTATCAAGCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E221623" ref_strand="-" ref_description="SGN-E221623 [cLEL-10-I19]">
      <seq>gagatccaaatacgaagaaacaaagggctttctccttcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaaggatttgagtgtgtgatttttgattcaagagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29632" stop="30784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29932" g_stop="29971" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29972" i_stop="30059" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30060" g_stop="30483" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="464" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="481"/>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E221623" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221623" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29932" e_stop="29971"/>
          <exon e_start="30060" e_stop="30483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTTTGATTC</genome_strand>
        <mrna_strand>GAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTTTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E293843" ref_strand="+" ref_description="SGN-E293843 [cLET-37-G12]">
      <seq>tcaggttgctgggcacaaggatctattggaaggagatccatacttgaggcaaaggctcaaacttcgtgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29758" stop="30507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29968" g_stop="29971" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29972" i_stop="30059" i_length="88">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30060" g_stop="30207" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="152" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E293843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>152</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29968" e_stop="29971"/>
          <exon e_start="30060" e_stop="30207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTACAGAAATTAATACTATTATTTTACCTCATCACCACAAAGCTCACATCCTATGGAAAATCTCTTTTAATTGCGCTGCTTGTCATAGGTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGAC</genome_strand>
        <mrna_strand>TCAG........................................................................................GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E291611" ref_strand="+" ref_description="SGN-E291611 [cLET-6-B18]">
      <seq>ttgaggcaaaggctcaaacttcttgattcttacatcacgacccttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29799" stop="30757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30099" g_stop="30465" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E291611" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30099" e_stop="30465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGA</genome_strand>
        <mrna_strand>TTGAGGCAAAGGCTCAAACTTCTTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E234407" ref_strand="-" ref_description="SGN-E234407 [cLEL-8-N19]">
      <seq>cttaacgtaagccaagcatacacattgaaacgaattcgtgaccccaactacaatgtgaaggtcagacctcacctagacaaggagatcatggaatcaagcaaaccagctgctgaattagtgaagctgaatcctacgagcgagtatgcgcctggcttggaagacaccctcatcttgaccatgaaaggtattgctgctggaatgcagaacactggttaaggctaaggctattatgtatgtataataataagtgatattgtctttcaacttttataaatcctatgtctgttcaagaataataatgatgagatgtttctgaaggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29841" stop="30760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30141" g_stop="30459" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="320" polyA_stop="337"/>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E234407" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30141" e_stop="30459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGG</genome_strand>
        <mrna_strand>CTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E372627" ref_strand="-" ref_description="SGN-E372627 [TUS-31-A1]">
      <seq>gtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttactttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcaggaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcactggatggattgaacaaatcgatgatttcctcatgtaaattcttatatatactagatcgtgctctcagtttcgttgataatctcaagtttcttatcccgttgaaggtttatgaatcgttttccataaaaaaaaaaaagagtgtaaattcttctagttaattacgattatcaggagtttccattttgtgccactttctattatacaagagcaagttcgattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="33179" stop="30732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32877" g_stop="32782" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="101" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32300" g_stop="32232" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="170" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32231" i_stop="31844" i_length="388">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31843" g_stop="31660" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="354" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31659" i_stop="31329" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31328" g_stop="31049" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="634" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="657"/>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E372627" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372627" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32877" e_stop="32782"/>
          <exon e_start="32300" e_stop="32232"/>
          <exon e_start="31843" e_stop="31660"/>
          <exon e_start="31328" e_stop="31049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTTGTGCCACTTTCTATTATACAAGAGCAA</genome_strand>
        <mrna_strand>TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTTGTGCCACTTTCTATTATACAAGAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E746606" ref_strand="+" ref_description="SGN-E746606 [GI|47104144]">
      <seq>tatttattttcccttgtctataagatcaaaaaacacaaccccatcactccaaattgaacaaaaatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttactttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcaggaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcactggatggattgaacaaatcgatgatttcctcatgtaaattcttatatatactagatcgtgctctcagtttcgttgataatctcaagtttcttatcccgttgaaggtttatgaatcgttttccataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35932" stop="30819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35632" g_stop="35252" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="431" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="507" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="603" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="684" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="776" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32877" g_stop="32782" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="872" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32300" g_stop="32232" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="873" r_stop="941" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32231" i_stop="31844" i_length="388">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="31843" g_stop="31660" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="942" r_stop="1125" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="31659" i_stop="31329" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="31328" g_stop="31121" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1126" r_stop="1333" r_length="208" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E746606" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35632" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32782"/>
          <exon e_start="32300" e_stop="32232"/>
          <exon e_start="31843" e_stop="31660"/>
          <exon e_start="31328" e_stop="31121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAG</genome_strand>
        <mrna_strand>TATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E370517" ref_strand="-" ref_description="SGN-E370517 [TUS-29-K23]">
      <seq>gagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttgctttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcaggaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcactggatggattgaacaaatcgatgatttcctcatgtaaattcttatatatactagatcgtgctctcagtttcgttgataatctcaagtttcttatcccgttgaaggtttatgaatcgttttccataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="33860" stop="30825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33560" g_stop="33491" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="162" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32877" g_stop="32782" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="258" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32300" g_stop="32232" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="327" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32231" i_stop="31844" i_length="388">
            <donor d_prob="0.913" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31843" g_stop="31660" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="511" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31659" i_stop="31329" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31328" g_stop="31125" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="715" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E370517" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370517" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33560" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32782"/>
          <exon e_start="32300" e_stop="32232"/>
          <exon e_start="31843" e_stop="31660"/>
          <exon e_start="31328" e_stop="31125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAA</genome_strand>
        <mrna_strand>GAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTGCTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E282688" ref_strand="-" ref_description="SGN-E282688 [cLER-15-H19]">
      <seq>tgttgctttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcaggaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcactggatggattgaacaaatcgatgatttcctcatgtaaattcttatatatactagatcgtgctctcagtttcgttgataatctcaagtttcttatcccgttgaaggtttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="32567" stop="30847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32267" g_stop="32232" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32231" i_stop="31844" i_length="388">
            <donor d_prob="0.913" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31843" g_stop="31660" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="220" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31659" i_stop="31329" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31328" g_stop="31156" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="393" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E282688" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282688" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32267" e_stop="32232"/>
          <exon e_start="31843" e_stop="31660"/>
          <exon e_start="31328" e_stop="31156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAG</genome_strand>
        <mrna_strand>TGTTGCTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E345757" ref_strand="+" ref_description="SGN-E345757 [cTOF-18-E3]">
      <seq>tgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttactttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcangaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcactggatggattgaacaaatcgatgatttcctcatgtaaatncttatatatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="34025" stop="30908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33725" g_stop="33710" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="97" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="189" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32877" g_stop="32782" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="285" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32300" g_stop="32232" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="354" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32231" i_stop="31844" i_length="388">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31843" g_stop="31660" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="538" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31659" i_stop="31329" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31328" g_stop="31208" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="659" r_length="121" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E345757" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33725" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32782"/>
          <exon e_start="32300" e_stop="32232"/>
          <exon e_start="31843" e_stop="31660"/>
          <exon e_start="31328" e_stop="31208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACT</genome_strand>
        <mrna_strand>TGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCANGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATNCTTATATATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E272934" ref_strand="+" ref_description="SGN-E272934 [cLEM-25-L12]">
      <seq>ttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttactttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcaagaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcactggatggattgaacaaatcgatgatttcctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="33694" stop="30926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33495" g_stop="33491" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="97" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32877" g_stop="32782" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="193" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32300" g_stop="32232" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="262" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32231" i_stop="31844" i_length="388">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31843" g_stop="31660" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="446" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31659" i_stop="31329" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31328" g_stop="31227" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="548" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E272934" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33495" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32782"/>
          <exon e_start="32300" e_stop="32232"/>
          <exon e_start="31843" e_stop="31660"/>
          <exon e_start="31328" e_stop="31227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCAT</genome_strand>
        <mrna_strand>TTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCAAGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E280568" ref_strand="+" ref_description="SGN-E280568 [cLER-1-M6]">
      <seq>tgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttgctttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcaggaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="34025" stop="30959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33725" g_stop="33710" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="97" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="189" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32877" g_stop="32782" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="285" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32300" g_stop="32232" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="354" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32231" i_stop="31844" i_length="388">
            <donor d_prob="0.913" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31843" g_stop="31660" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="538" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31659" i_stop="31329" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31328" g_stop="31259" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="608" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E280568" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33725" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32782"/>
          <exon e_start="32300" e_stop="32232"/>
          <exon e_start="31843" e_stop="31660"/>
          <exon e_start="31328" e_stop="31259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACT</genome_strand>
        <mrna_strand>TGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTGCTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E269216" ref_strand="+" ref_description="SGN-E269216 [cLEI-16-D8]">
      <seq>tttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttactttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="34099" stop="31458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33799" g_stop="33710" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="171" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="263" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32877" g_stop="32782" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="359" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32300" g_stop="32232" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="428" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32231" i_stop="31844" i_length="388">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31843" g_stop="31758" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="514" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E269216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33799" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32782"/>
          <exon e_start="32300" e_stop="32232"/>
          <exon e_start="31843" e_stop="31758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTG</genome_strand>
        <mrna_strand>TTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E371678" ref_strand="+" ref_description="SGN-E371678 [TUS-29-K22]">
      <seq>tgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagacagatggacccatatcacttattaatggagctgttgggcagccaacgctattggttcctgttgcttatgatatgagcttacattggcggaacggaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="34025" stop="31932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33725" g_stop="33710" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="97" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="189" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32877" g_stop="32782" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="285" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481">
            <donor d_prob="0.955" d_score="0.94"/>
            <acceptor a_prob="0.939" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32300" g_stop="32232" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="354" r_length="69" r_score="0.797"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E371678" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33725" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32782"/>
          <exon e_start="32300" e_stop="32232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG</genome_strand>
        <mrna_strand>TGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGACAGATGGACCCATATCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTGTTGGGCAGCCAACGCTATTGGTTCCTGTTGCTTATGATATGAGCTTACATTGGCGGAACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E730552" ref_strand="+" ref_description="SGN-E730552 [LA24BH09]">
      <seq>ctatgatcaaaaaacacaaccccatcactccaaattgaacaaaaatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaacaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttgctttggtcatgatttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35912" stop="31943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35613" g_stop="35252" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="405" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="481" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33772" i_length="123">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33771" g_stop="33710" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="543" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="624" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="716" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32877" g_stop="32782" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="812" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32300" g_stop="32243" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="870" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E730552" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35613" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33771" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32782"/>
          <exon e_start="32300" e_stop="32243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAAT</genome_strand>
        <mrna_strand>CTATGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGA-TTT-TAT---AT--GGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA...........................................................................................................................CACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTGCTTTGGTCATGATTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E729566" ref_strand="+" ref_description="SGN-E729566 [LA21BG08]">
      <seq>ctaatctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttgctttggtcatgatttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35860" stop="31943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35560" g_stop="35252" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="359" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="435" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="531" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="612" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="704" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32877" g_stop="32782" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="800" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32300" g_stop="32243" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="858" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E729566" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35560" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32782"/>
          <exon e_start="32300" e_stop="32243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAAT</genome_strand>
        <mrna_strand>CTAATCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTGCTTTGGTCATGATTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E730307" ref_strand="+" ref_description="SGN-E730307 [LA23CH10]">
      <seq>gggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaanggagctgttgggcagcccaagctattggttcctgctgctttggtcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35867" stop="31951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35567" g_stop="35252" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="366" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="442" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="538" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="619" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="711" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32877" g_stop="32782" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="807" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32300" g_stop="32251" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="857" r_length="50" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E730307" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35567" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32782"/>
          <exon e_start="32300" e_stop="32251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGA</genome_strand>
        <mrna_strand>GGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NGGAGCTGTTGGGCAGCCCAAGCTATTGGTTCCTGCTGCTTTGGTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E709602" ref_strand="+" ref_description="SGN-E709602 [FA52CB12]">
      <seq>gctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggaccccgagcacttattaagggagctgttgggcagccaaggctattggttcctgttgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35856" stop="31958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35556" g_stop="35252" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="355" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="431" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="527" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="608" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="700" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32877" g_stop="32782" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="796" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32300" g_stop="32258" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="839" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E709602" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35556" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32782"/>
          <exon e_start="32300" e_stop="32258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTG</genome_strand>
        <mrna_strand>GCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCCGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E370518" ref_strand="+" ref_description="SGN-E370518 [TUS-29-K23]">
      <seq>tgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagacagatggacccagagcacttattaagggagctgttgggcagccaaggctattgggtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="34025" stop="31967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33725" g_stop="33710" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="97" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="189" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32877" g_stop="32782" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="285" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32300" g_stop="32267" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="319" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E370518" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33725" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32782"/>
          <exon e_start="32300" e_stop="32267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCT</genome_strand>
        <mrna_strand>TGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGACAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E728069" ref_strand="+" ref_description="SGN-E728069 [LA16CD12]">
      <seq>tgggagttctaagctactgttacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35868" stop="32485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35568" g_stop="35252" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="367" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="443" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="539" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="620" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="712" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32877" g_stop="32785" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="805" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E728069" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35568" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTAT</genome_strand>
        <mrna_strand>TGGGAGTTCTAAGCTACTGTTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E343878" ref_strand="+" ref_description="SGN-E343878 [cTOF-12-L15]">
      <seq>gagggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttggaattggtggtggttggtgtgatttcagcttatatctcttattctcctgaaatacagtaagttacactggctgggttgattggttctttgatgtacatgcgtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35867" stop="32534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35569" g_stop="35252" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="368" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="444" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="540" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="621" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="713" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32877" g_stop="32834" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="758" r_length="45" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E343878" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35569" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGT-GTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACT-GCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGC</genome_strand>
        <mrna_strand>GAGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGAATTGGTGGTGGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAAT-ACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E269605" ref_strand="+" ref_description="SGN-E269605 [cLEM-2-H5]">
      <seq>gctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35713" stop="32541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35413" g_stop="35252" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="212" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="288" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="384" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="465" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33392" g_stop="33301" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="557" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32877" g_stop="32841" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="594" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E269605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35413" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33301"/>
          <exon e_start="32877" e_stop="32841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATG</genome_strand>
        <mrna_strand>GCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E346235" ref_strand="+" ref_description="SGN-E346235 [cTOF-23-E12]">
      <seq>agctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgtttggtgtgatttcagcttatatctcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35857" stop="33021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35557" g_stop="35252" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="356" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="432" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="528" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="609" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33392" g_stop="33321" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="682" r_length="73" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E346235" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35557" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTG-TTGGTGTGATTTCAGCTTATATCTCTTAT</genome_strand>
        <mrna_strand>AGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTTGGTGTGATTTCAGCTTATATCTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E372562" ref_strand="+" ref_description="SGN-E372562 [TUS-31-E5]">
      <seq>ttttcccttgtctataagatcaaaaaacacaaccccatcactccaaattgaacaaaaatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35926" stop="33063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35626" g_stop="35252" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="425" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="501" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="597" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33491" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="678" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33392" g_stop="33363" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="708" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E372562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35626" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
          <exon e_start="33571" e_stop="33491"/>
          <exon e_start="33392" e_stop="33363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTT</genome_strand>
        <mrna_strand>TTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E339390" ref_strand="+" ref_description="SGN-E339390 [cTOF-4-M23]">
      <seq>ggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgtacgtcattgaagcttgcaattagttcattgcttgtaacttaatttataatatttctttgctcacctcgtctctaactaataagatagagaaatatggttctctaagttgtagttccgaaatttttttatcatccangacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35866" stop="33214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35566" g_stop="35252" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="365" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="441" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33514" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="733" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E339390" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35566" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTC</genome_strand>
        <mrna_strand>GGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCANGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E339371" ref_strand="+" ref_description="SGN-E339371 [cTOF-4-G9]">
      <seq>ggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgtacgtcattgaagcttgcaattagttcattgcttgtaacttaatttataatatttctttgctcacctcgtctctaactaataagatagagaaatatggttctctaagttgtagttccgaaatttttttatcatccaggacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35866" stop="33214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35566" g_stop="35252" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="365" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="441" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33514" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="733" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E339371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35566" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTC</genome_strand>
        <mrna_strand>GGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E298590" ref_strand="+" ref_description="SGN-E298590 [cLET-41-J18]">
      <seq>aatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcacgatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagcgacgtgatgttgagggaaataaaacgtcctcaagggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35870" stop="33234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35570" g_stop="35252" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="369" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="445" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="541" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33534" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="579" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E298590" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35570" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
          <exon e_start="33571" e_stop="33534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGA</genome_strand>
        <mrna_strand>AATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCACGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGC..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E325944" ref_strand="+" ref_description="SGN-E325944 [cTOC-12-B20]">
      <seq>tacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35848" stop="33245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35548" g_stop="35252" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="347" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="423" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="519" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33545" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="546" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E325944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35548" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
          <exon e_start="33571" e_stop="33545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGT</genome_strand>
        <mrna_strand>TACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E295492" ref_strand="+" ref_description="SGN-E295492 [cLET-23-I8]">
      <seq>ttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35862" stop="33398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35562" g_stop="35252" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="361" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="437" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="533" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33559" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="546" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E295492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35562" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
          <exon e_start="33571" e_stop="33559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGA</genome_strand>
        <mrna_strand>TTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E326268" ref_strand="+" ref_description="SGN-E326268 [cTOC-14-G13]">
      <seq>aattacctctacagccacacgcatatctgaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcatgatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35840" stop="33399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35540" g_stop="35252" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="339" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="415" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="511" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33562" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="521" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E326268" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35540" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
          <exon e_start="33571" e_stop="33562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGT</genome_strand>
        <mrna_strand>AATTACCTCTACAGCCACACGCATATCTGAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCATGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E268104" ref_strand="+" ref_description="SGN-E268104 [cLEI-15-G15]">
      <seq>acggctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcatgatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35845" stop="33401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35549" g_stop="35252" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="424" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="520" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33571" g_stop="33563" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="529" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E268104" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35549" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
          <exon e_start="33571" e_stop="33563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATG</genome_strand>
        <mrna_strand>ACGGCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCATGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E282503" ref_strand="+" ref_description="SGN-E282503 [cLER-18-I22]">
      <seq>tactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35854" stop="33409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35554" g_stop="35252" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="353" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="429" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="525" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E282503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35554" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT</genome_strand>
        <mrna_strand>TACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E266099" ref_strand="+" ref_description="SGN-E266099 [cLEI-6-D21]">
      <seq>ttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35862" stop="33436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35562" g_stop="35252" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="361" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="437" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33736" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="507" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E266099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35562" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAG</genome_strand>
        <mrna_strand>TTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E325845" ref_strand="+" ref_description="SGN-E325845 [cTOC-12-B12]">
      <seq>ggagttctaagctacttctacctcccaattacctctacagccacacgcatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35866" stop="33440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35566" g_stop="35252" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="365" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="441" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33740" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="507" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E325845" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35566" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGC</genome_strand>
        <mrna_strand>GGAGTTCTAAGCTACTTCTACCTCCCAATTACCTCTACAGCCACACGCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E269645" ref_strand="+" ref_description="SGN-E269645 [cLEM-2-L18]">
      <seq>aaacacaaccccatcactccaaattgaacaaaaatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35902" stop="33453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35602" g_stop="35252" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="401" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="477" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33753" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="530" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E269645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35602" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCA</genome_strand>
        <mrna_strand>AAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E271858" ref_strand="+" ref_description="SGN-E271858 [cLEM-8-J19]">
      <seq>tactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaagagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35854" stop="33462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35554" g_stop="35252" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="353" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="429" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33762" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="473" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E271858" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35554" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACG</genome_strand>
        <mrna_strand>TACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAAGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E267697" ref_strand="+" ref_description="SGN-E267697 [cLEI-12-G2]">
      <seq>aatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattctgcaaacaatgcaaccccattgtcaattccaacacagtccaagcagaaatctgagaaatgagtctagcggggtggctgctaatggggactatgctgctgaccggccgactaccactactaagcttaggaagtactggggtgaggatgtggatgctctcacctctgatgatatgatatggaataaggaatttatgggtcgcatgaagaggcatattcaggatcctcaagaaaatgcccctgctgctgctgaaaaggaagagatatcaggaatacttagcttaaacagagtcatgaatctcgacagtttggaagttgacttgaccaatgagctaactgccccttcacaacctgttctagaaccagaagtcgaaaagactcaagctggttttactgcatatgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35870" stop="33482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35570" g_stop="35252" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="370" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.041" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="446" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33805" g_stop="33782" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="470" r_length="24" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E267697" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35570" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
          <exon e_start="33805" e_stop="33782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAAT-TGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAA</genome_strand>
        <mrna_strand>AATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTGCAAACAATGCAACCCCATTGTCAATTCCAACACAGTCCAAGCAGAAATCTGAGAAATGAGTCTAGCGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCGGCCGACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATGCTCTCACCTCTGATGATATGATATGGAATAAGGAATTTATGGGTCGCATGAAGAGGCATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGAATACTTAGCTTAAACAGAGTCATGAATCTCGACAG................................................................................TTTGGAAGTTGACTTGACCAATGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAAGACTCAA.........................................................................................GCTGGTTTTACTGCATATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E280181" ref_strand="+" ref_description="SGN-E280181 [cLEL-7-M20]">
      <seq>gcacgagctacagccacacccatatctcaagattcttcaaacaatccagccccattgtcaattccaacacactccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35832" stop="33594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35538" g_stop="35252" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="338" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33895" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="414" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E280181" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35538" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAC-CTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA</genome_strand>
        <mrna_strand>GCACGAGCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAGCCCCATTGTCAATTCCAACACACTCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E281764" ref_strand="+" ref_description="SGN-E281764 [cLER-14-O9]">
      <seq>ttctaagctactgctacctcccaattacctgtacagccacacccatatctcaagattcttcaaacaatccaaccccattgttaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35862" stop="33621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35562" g_stop="35252" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="34051" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="361" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33970" g_stop="33921" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="411" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E281764" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35562" e_stop="35252"/>
          <exon e_start="34100" e_stop="34051"/>
          <exon e_start="33970" e_stop="33921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTC</genome_strand>
        <mrna_strand>TTCTAAGCTACTGCTACCTCCCAATTACCTGTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTTAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E270686" ref_strand="+" ref_description="SGN-E270686 [cLEM-6-K16]">
      <seq>aaacacaaccccatcactccaaattgaacaaaaatgggagtgtctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35902" stop="35011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35602" g_stop="35311" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E270686" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35602" e_stop="35311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGT-TCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGG</genome_strand>
        <mrna_strand>AAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTGTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E270852" ref_strand="+" ref_description="SGN-E270852 [cLEM-6-K8]">
      <seq>atatttattttcccttgtctataagatcaaaaaacacaaccccatcactccaaattgaacaaaaatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35933" stop="35039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35633" g_stop="35339" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E270852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35633" e_stop="35339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGAT</genome_strand>
        <mrna_strand>ATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E287842" ref_strand="+" ref_description="SGN-E287842 [cLES-19-C11]">
      <seq>ttttcccttgtctataagatcaaaaaacacaaccccatcactccaaattgaacaaaaatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35926" stop="35088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35626" g_stop="35388" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E287842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35626" e_stop="35388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTAC</genome_strand>
        <mrna_strand>TTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E309276" ref_strand="+" ref_description="SGN-E309276 [cLEY-22-O18]">
      <seq>caaagcaaggcagccgtttgttctcatcaagtgaatcggaatattgagcttctttttggatccaagaaatgaacttagggagactgaaaaatgtggtagctgctgcagcgattgaaggattagccgaggtaagggccaagatatttggtcatgtaattaatccaactgggcagcgatctgctcacaaggttttacgcaagaagctgatcggtgaaaaggtctcacaatggtacccacacgatatcatgaaagatgaccctcttgtgatggctcgtcaagagcaagagcgtctcagcaagcttgaaatgttgaaacgtcgtggaaaggggccacctaagaagggccagggcaaacaggctaagaaacgcaacaaatagagatgatagtctcactggtttgaaataaaggggtatctaggattactatttgcaatttgattactaacttttctcatcagccacttgctttctagtgaacatcatctgcatanctcttctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40431" stop="13527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40131" g_stop="40101" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40100" i_stop="38650" i_length="1451">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38649" g_stop="38184" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="498" r_length="467" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38183" i_stop="37486" i_length="698">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37485" g_stop="37470" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="514" r_length="16" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E309276" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40131" e_stop="40101"/>
          <exon e_start="38649" e_stop="38184"/>
          <exon e_start="37485" e_stop="37470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCAAGGCAGCCGTTTGTTCTCATCAAGGTTCGCTCCATTCTACATTCTTCATTTTCTTTTTCTTTTTTTTCTAATTTAAATTTGAATGTGTACATTTTCTGTCGTAACCTCCTTCGCAACGAGTAAATTAGTTTGTGCTTTCCATTTTTTCTAAAGTTGAAATTTAGCTTGTTGTTTACATTTCTCTGATTTTGCTTAGTTGTTGTTTACATGTTATCAATGAAATGATTTACTTCATAAAGTTCACTGTTTTTGTGGATTAGTTTCATATTTTCAATAGGTTAATTTGAATAGTTCTATGTTCTGTGCATATTTCAGCTAACTCTGTCCACCAAAGCTCAAATAAATAGGAAAAAGTGGATACTTCTTTGTAAAATAATTATTGGACTGATTTAGGCTTACAAAATAGGGGTTCAAATAAACTTGGTATGCATTAGAAGCCTGAAAATTGAAAAATCATTTACATTTCTTGAGTTAGGATGCATACCGGCATATGCATTCACTATTTGATTTCCCAGGTCAAAAGAATTAATTTCCCTTGCACATATGTTGTGCTAGTGAACAAATAAGAAGGTTGATGTCTCTTTGGAATGTTGTAATTTTTTTTTTCTTCAAAAATACGTAAAGAAAGTGATGTCTCGTAACTCTTCTTGATATATAGGCGATTTAGAAGTTTTTGGGATGATGGAATATACAATGGGAATGAGATTTTGTGATTGAGTCGGGGACTGATGGCGTTATTCAGGAAGCCTTTTCATGATTTTCCTTTTGAGAATTTAGAAGCATGTCTAAGGTTTCAAGCTGAGGTTGTGTCGAGCTTTCTGTTCTGTTTTCCTTTTTAGAGTCTTCCGGTCCATCGTTTGTTTCTATAGTTGGAGAACTTTGTATTCTGGTCATTCCCAGCATACTAATGGAAAAGCATGACCAACGATATCTTGTTGTTCCTGTAAAGCGGAGAATATGCATCTAATTCTTTGTATTTATCTGAGAGCAACTTGTGATATTTTTATCAGAGAAATAGAATGAATGTGATATAGAGGGGACTAATGTGACAATCTGTGTCGACGTTTTGAGTAGGTAATACACAATCTGTGTTGGTTACTTTGATTCTTTTTTTTCTTAAACGGAAGTTTTGTTTGAATTTTGATCATTGTTTGGACCAAATATAAATAGGATGTTATCAATCCGAAATGTGATATAAACTATAAACTGAGGGGTGCTTGAAATATGACTGGTTTTGTATGTATACTTATTTTGTAATTCTGTTGTCCATCAAAGACAAGCAAAGTTTTAATTCGTGATGAATTTATATATGTTTAGTATTTCTTTAGTTTTCGATTGATTGCATGCTGCACTTAAGGACCTTAGCCTTTTTTTGTTGCAATTTTTACTTTCAAGAACAATGAGTCTGATATATTTACAATTGTGTTAGGCTTCTCACTGAACCTTCTTTGAGACTCTGCTTCTCCTTTGTGCAGTGAATCGGAATATTGAGCTTCTTTTTGGATCCAAGAAATGAACTTAGGGAGACTGAAAAATGTGGTAGCTGCTGCAGCGATTGAAGGATTAGCCGAGGTAAGGGCCAAGATATTTGGTCATGTAATTAATCCAACTGGGCAGCGATCTGCTCACAAGGTTTTACGCAAGAAGCTGATCGGTGAAAAGGTCTCACAATGGTACCCACACGATATCATGAAAGATGACCCTCTTGTGATGGCTCGTCAAGAGCAAGAGCGTCTCAGCAAGCTTGAAATGTTGAAACGTCGTGGAAAGGGGCCACCTAAGAAGGGCCAGGGCAAACAGGCTAAGAAACGCAACAAATAGAGATGATAGTCTCACTGGTTTGAAATAAAGGGGTATCTAGGATTACTATTTGCAATTTGATTACTAACTTTTCTCATCAGCCACTTGCTTTCTAGTGAACATCATCTGCATA-CTCTTCTACAATTTTTTTCCATATAGTTTGGGCTGTTCGAGCTAGTTTGCTTGTTCCTCGACTAATTTGCAATGAGTTAAATGGGTGGGTATATTATTGGATTTGGTATAATAGAATGTGACTTCAAGTAAATAAATTTATGGGAAAAAGGACAAATTATAGATAGGATTTTAGCAAATCCGGTGGCGTTGGAAAGATTCAATTATCTATCATATAATAGGTAATGAGACACCTAATTCATTTTGTGCTAAGAGTTATTATTCCAAACTATTATAAATGGTATGCAGATATTATCCGTCATACTTTTAGAACATTGGTGCTCCTGCAGTTCAAAAATTAATATTTGCCATTTATATTAATGGACATGTACATGTCATAATCATATTCACTGACCCGATATTTGTTAGATATACGATCAGATTGGCCACATGTTCTAATTTAGTATTATGTTAGAGTAAAGGGCATATTATGCTCTAGTTTTTAGACAGTAGAGACACCAATGTTCCAAAAGTACGAGGGATGCAGGATACTAAAACCTAACCGTGCAAGAGTAAATGTGTGTGAAGTTAAATGACATGGGTAAATATATCAAAAATGAAAGTATAATAAAAAACAAATATAACCCTTTTTTCTCATAATACAAGACCAAATATGACTCCTTTCGATAGTATTATTCTACTTAAATGCCCAAATCATCAATAAATACAAAAAAAAAAAATCAA</genome_strand>
        <mrna_strand>CAAAGCAAGGCAGCCGTTTGTTCTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATCGGAATATTGAGCTTCTTTTTGGATCCAAGAAATGAACTTAGGGAGACTGAAAAATGTGGTAGCTGCTGCAGCGATTGAAGGATTAGCCGAGGTAAGGGCCAAGATATTTGGTCATGTAATTAATCCAACTGGGCAGCGATCTGCTCACAAGGTTTTACGCAAGAAGCTGATCGGTGAAAAGGTCTCACAATGGTACCCACACGATATCATGAAAGATGACCCTCTTGTGATGGCTCGTCAAGAGCAAGAGCGTCTCAGCAAGCTTGAAATGTTGAAACGTCGTGGAAAGGGGCCACCTAAGAAGGGCCAGGGCAAACAGGCTAAGAAACGCAACAAATAGAGATGATAGTCTCACTGGTTTGAAATAAAGGGGTATCTAGGATTACTATTTGCAATTTGATTACTAACTTTTCTCATCAGCCACTTGCTTTCTAGTGAACATCATCTGCATANCTCTTCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E348765" ref_strand="+" ref_description="SGN-E348765 [cTOF-29-A12]">
      <seq>aagacccgagattttattgaacaatttttctccttctttccactcaaaaactccattgaagcagccaagagcttatactacacagtaatcaatatatttggaagtggcggatccagtctctcacaaagcaaggcagccgtttgttctcatcaagtgaatcggaatattgagcttctttttggatccaagaaatgaacttagggagactgaaaaatgtggtagctgctgcagcgattgaaggattagccgaggtaagggccaagatatttggtcatgtaattaatccaactgggcagcgatctgctcacaaggttttacgcaagaagctgatcggtgaaaaggtctcacaatggtacccacacgatatcatgaaagatgaccctcttgtgatggctcgtcaagagcaagagcgtctcagcaagcttgaaatgttgaaacgtcgtggaaaggggccacctaagaagggccagggcaaacaggctaagaaacgcaacaaatagagatgatagtctcactggtttgaaaaaaggggtatctaggattactatttgcaatttgattactaacttttctcatcagccacttgctttctagtgaacatcatctgcatactcttctacaatttttttccatatagtttgggctggtcgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40554" stop="37850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40254" g_stop="40101" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40100" i_stop="38650" i_length="1451">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38649" g_stop="38150" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="653" r_length="499" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E348765" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40254" e_stop="40101"/>
          <exon e_start="38649" e_stop="38150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCCGAGATTTTATTGAACAATTTTTCTCCTTCTTTCCACTCAAAAACTCCATTGAAGCAGCCAAGAGCTTATACTACACAGTAATCAATATATTTGGAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAGGTTCGCTCCATTCTACATTCTTCATTTTCTTTTTCTTTTTTTTCTAATTTAAATTTGAATGTGTACATTTTCTGTCGTAACCTCCTTCGCAACGAGTAAATTAGTTTGTGCTTTCCATTTTTTCTAAAGTTGAAATTTAGCTTGTTGTTTACATTTCTCTGATTTTGCTTAGTTGTTGTTTACATGTTATCAATGAAATGATTTACTTCATAAAGTTCACTGTTTTTGTGGATTAGTTTCATATTTTCAATAGGTTAATTTGAATAGTTCTATGTTCTGTGCATATTTCAGCTAACTCTGTCCACCAAAGCTCAAATAAATAGGAAAAAGTGGATACTTCTTTGTAAAATAATTATTGGACTGATTTAGGCTTACAAAATAGGGGTTCAAATAAACTTGGTATGCATTAGAAGCCTGAAAATTGAAAAATCATTTACATTTCTTGAGTTAGGATGCATACCGGCATATGCATTCACTATTTGATTTCCCAGGTCAAAAGAATTAATTTCCCTTGCACATATGTTGTGCTAGTGAACAAATAAGAAGGTTGATGTCTCTTTGGAATGTTGTAATTTTTTTTTTCTTCAAAAATACGTAAAGAAAGTGATGTCTCGTAACTCTTCTTGATATATAGGCGATTTAGAAGTTTTTGGGATGATGGAATATACAATGGGAATGAGATTTTGTGATTGAGTCGGGGACTGATGGCGTTATTCAGGAAGCCTTTTCATGATTTTCCTTTTGAGAATTTAGAAGCATGTCTAAGGTTTCAAGCTGAGGTTGTGTCGAGCTTTCTGTTCTGTTTTCCTTTTTAGAGTCTTCCGGTCCATCGTTTGTTTCTATAGTTGGAGAACTTTGTATTCTGGTCATTCCCAGCATACTAATGGAAAAGCATGACCAACGATATCTTGTTGTTCCTGTAAAGCGGAGAATATGCATCTAATTCTTTGTATTTATCTGAGAGCAACTTGTGATATTTTTATCAGAGAAATAGAATGAATGTGATATAGAGGGGACTAATGTGACAATCTGTGTCGACGTTTTGAGTAGGTAATACACAATCTGTGTTGGTTACTTTGATTCTTTTTTTTCTTAAACGGAAGTTTTGTTTGAATTTTGATCATTGTTTGGACCAAATATAAATAGGATGTTATCAATCCGAAATGTGATATAAACTATAAACTGAGGGGTGCTTGAAATATGACTGGTTTTGTATGTATACTTATTTTGTAATTCTGTTGTCCATCAAAGACAAGCAAAGTTTTAATTCGTGATGAATTTATATATGTTTAGTATTTCTTTAGTTTTCGATTGATTGCATGCTGCACTTAAGGACCTTAGCCTTTTTTTGTTGCAATTTTTACTTTCAAGAACAATGAGTCTGATATATTTACAATTGTGTTAGGCTTCTCACTGAACCTTCTTTGAGACTCTGCTTCTCCTTTGTGCAGTGAATCGGAATATTGAGCTTCTTTTTGGATCCAAGAAATGAACTTAGGGAGACTGAAAAATGTGGTAGCTGCTGCAGCGATTGAAGGATTAGCCGAGGTAAGGGCCAAGATATTTGGTCATGTAATTAATCCAACTGGGCAGCGATCTGCTCACAAGGTTTTACGCAAGAAGCTGATCGGTGAAAAGGTCTCACAATGGTACCCACACGATATCATGAAAGATGACCCTCTTGTGATGGCTCGTCAAGAGCAAGAGCGTCTCAGCAAGCTTGAAATGTTGAAACGTCGTGGAAAGGGGCCACCTAAGAAGGGCCAGGGCAAACAGGCTAAGAAACGCAACAAATAGAGATGATAGTCTCACTGGTTTGAAATAAAGGGGTATCTAGGATTACTATTTGCAATTTGATTACTAACTTTTCTCATCAGCCACTTGCTTTCTAGTGAACATCATCTGCATACTCTTCTACAATTTTTTTCCATATAGTTTGGGCTGTTCGAGC</genome_strand>
        <mrna_strand>AAGACCCGAGATTTTATTGAACAATTTTTCTCCTTCTTTCCACTCAAAAACTCCATTGAAGCAGCCAAGAGCTTATACTACACAGTAATCAATATATTTGGAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATCGGAATATTGAGCTTCTTTTTGGATCCAAGAAATGAACTTAGGGAGACTGAAAAATGTGGTAGCTGCTGCAGCGATTGAAGGATTAGCCGAGGTAAGGGCCAAGATATTTGGTCATGTAATTAATCCAACTGGGCAGCGATCTGCTCACAAGGTTTTACGCAAGAAGCTGATCGGTGAAAAGGTCTCACAATGGTACCCACACGATATCATGAAAGATGACCCTCTTGTGATGGCTCGTCAAGAGCAAGAGCGTCTCAGCAAGCTTGAAATGTTGAAACGTCGTGGAAAGGGGCCACCTAAGAAGGGCCAGGGCAAACAGGCTAAGAAACGCAACAAATAGAGATGATAGTCTCACTGGTTTGAAA-AAAGGGGTATCTAGGATTACTATTTGCAATTTGATTACTAACTTTTCTCATCAGCCACTTGCTTTCTAGTGAACATCATCTGCATACTCTTCTACAATTTTTTTCCATATAGTTTGGGCTGGTCGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E323076" ref_strand="+" ref_description="SGN-E323076 [cTOB-28-G22]">
      <seq>gaagtggcggatccagtctctcacaaagcaaggcagccgtttgttctcatcaaggcgatttagaagtttttgggatgatggaatatacaatgggaatgagattttgtgattgagtcggggactgatggcgttattcaggaagccttttcatgattttccttttgagaatttagaagcatgtctaaggtttcaagctgaggttgtgtcgagctttctgttctgttttcctttttagagtcttccggtccatcgtttgtttctatagttggagaactttgtattctggtcattcccagcatactaatggaaaagcatgaccaacgatatcttgttgttcctgtaaagcggagaatatgcatctaattctttgtatttatctgagagcaacttgtgatatttttatcagagaaatagaatgaatgtgatatagaggggactaatgtgacaatctgtgtcgacgttttgagtaggtaatacacaatctgtgttggttactttgattctttttttcttaaacggaagttttgtttgaattttgatcattgtttgggacaaatataaataggatgttatcaatccgaaatgtgatataaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40454" stop="38625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40154" g_stop="40101" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40100" i_stop="39467" i_length="634">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39466" g_stop="38925" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="595" r_length="541" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E323076" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40154" e_stop="40101"/>
          <exon e_start="39466" e_stop="38925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAGGTTCGCTCCATTCTACATTCTTCATTTTCTTTTTCTTTTTTTTCTAATTTAAATTTGAATGTGTACATTTTCTGTCGTAACCTCCTTCGCAACGAGTAAATTAGTTTGTGCTTTCCATTTTTTCTAAAGTTGAAATTTAGCTTGTTGTTTACATTTCTCTGATTTTGCTTAGTTGTTGTTTACATGTTATCAATGAAATGATTTACTTCATAAAGTTCACTGTTTTTGTGGATTAGTTTCATATTTTCAATAGGTTAATTTGAATAGTTCTATGTTCTGTGCATATTTCAGCTAACTCTGTCCACCAAAGCTCAAATAAATAGGAAAAAGTGGATACTTCTTTGTAAAATAATTATTGGACTGATTTAGGCTTACAAAATAGGGGTTCAAATAAACTTGGTATGCATTAGAAGCCTGAAAATTGAAAAATCATTTACATTTCTTGAGTTAGGATGCATACCGGCATATGCATTCACTATTTGATTTCCCAGGTCAAAAGAATTAATTTCCCTTGCACATATGTTGTGCTAGTGAACAAATAAGAAGGTTGATGTCTCTTTGGAATGTTGTAATTTTTTTTTTCTTCAAAAATACGTAAAGAAAGTGATGTCTCGTAACTCTTCTTGATATATAGGCGATTTAGAAGTTTTTGGGATGATGGAATATACAATGGGAATGAGATTTTGTGATTGAGTCGGGGACTGATGGCGTTATTCAGGAAGCCTTTTCATGATTTTCCTTTTGAGAATTTAGAAGCATGTCTAAGGTTTCAAGCTGAGGTTGTGTCGAGCTTTCTGTTCTGTTTTCCTTTTTAGAGTCTTCCGGTCCATCGTTTGTTTCTATAGTTGGAGAACTTTGTATTCTGGTCATTCCCAGCATACTAATGGAAAAGCATGACCAACGATATCTTGTTGTTCCTGTAAAGCGGAGAATATGCATCTAATTCTTTGTATTTATCTGAGAGCAACTTGTGATATTTTTATCAGAGAAATAGAATGAATGTGATATAGAGGGGACTAATGTGACAATCTGTGTCGACGTTTTGAGTAGGTAATACACAATCTGTGTTGGTTACTTTGATTCTTTTTTTTCTTAAACGGAAGTTTTGTTTGAATTTTGATCATTGTTTGGACCAAATATAAATAGGATGTTATCAATCCGAAATGTGATATAAAC</genome_strand>
        <mrna_strand>GAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATTTAGAAGTTTTTGGGATGATGGAATATACAATGGGAATGAGATTTTGTGATTGAGTCGGGGACTGATGGCGTTATTCAGGAAGCCTTTTCATGATTTTCCTTTTGAGAATTTAGAAGCATGTCTAAGGTTTCAAGCTGAGGTTGTGTCGAGCTTTCTGTTCTGTTTTCCTTTTTAGAGTCTTCCGGTCCATCGTTTGTTTCTATAGTTGGAGAACTTTGTATTCTGGTCATTCCCAGCATACTAATGGAAAAGCATGACCAACGATATCTTGTTGTTCCTGTAAAGCGGAGAATATGCATCTAATTCTTTGTATTTATCTGAGAGCAACTTGTGATATTTTTATCAGAGAAATAGAATGAATGTGATATAGAGGGGACTAATGTGACAATCTGTGTCGACGTTTTGAGTAGGTAATACACAATCTGTGTTGGTTACTTTGATTC-TTTTTTTCTTAAACGGAAGTTTTGTTTGAATTTTGATCATTGTTTGGGACAAATATAAATAGGATGTTATCAATCCGAAATGTGATATAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E392793" ref_strand="+" ref_description="SGN-E392793 [TUS-36-N12]">
      <seq>cttctgttaagttacaattttcaagtcagctactttagtttttgatcaaatctggcttaatcttctcaaggttgtttcttccaattttccaggttagctacttcttcaattctccgtctaacatttttttttttgaatgttgtctgatccgtgtctatctattttgggagagctagctcagatacgagggaaacattcctatattccttactgccatctttatatgtaaaaggatatctttcttgacgtttggttatgataaatatatttctctaagttcttttgttgcaatttttgcattgaaatcaatcttctcttaggagttggaattggaagtgaccaagcatatgcgactcataccctatcgctctgctaagtagggctcttaacaaaaggaaggtaaaatcgatattggttgtcaattagaacagcaagtccaaacttttattgttttaggtatattggctccctgacagtaccacaggatgttatctggaatattaatagaaaggaaattaactattaaggccaatttttgttaatgaaaatgaaatatgcaaccatttccatttgaagtaaattttgctttttagttttacaggtgaaagccaaatgaaactgatcccagatgctgttcatgacgcgagttgctgccaatttgtaagtgttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="42300" stop="41036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42009" g_stop="41336" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E392793" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42009" e_stop="41336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTGCAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACA-TTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATAGAAAGGAAATTAACTATTAAGGCCAATTTTTGTTAATGAAAATGAAATATGCAACCATTTCCATTTGAAGTAAATTTTGCTTTTTAGTTTTACAGGTGAAAGCCAAATGAAACTGATCCCAGATGCTGTTCATGACGCGAGTTGCTGCCAAATTTGTAAGTGTTTTTTT</genome_strand>
        <mrna_strand>CTTCTGTTAAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACATTTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATAGAAAGGAAATTAACTATTAAGGCCAATTTTTGTTAATGAAAATGAAATATGCAACCATTTCCATTTGAAGTAAATTTTGCTTTTTAGTTTTACAGGTGAAAGCCAAATGAAACTGATCCCAGATGCTGTTCATGACGCGAGTTGCTGCC-AATTTGTAAGTGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E241488" ref_strand="+" ref_description="SGN-E241488 [cLED-28-D19]">
      <seq>ttctgttaagttacaattttcaagtcagctactttagtttttgatcaaatctggcttaatcttctcaaggttgtttcttccaattttccaggttagctacttcttcaattctccgtctaacatttttttttttgaatgttgtctgatccgtgtctatctattttgggagagctagctcagatacgagggaaacattcctatattccttactgccatctttatatgtaaaaggatatctttcttgacgtttggttatgataaatatatttctctaagttcttttgttgcaatttttgcattgaaatcaatcttctcttaggagttggaattggaagtgaccaagcatatgcgactcataccctatcgctctgctaagtagggctcttaacaaaaggaaggtaaaatcgatattggttgtcaattaaaacagcaagtccaaacttttattgttttaggtatattggctccctgacagtaccacaggatgttatctggaatattaatagaaaggaaattaactattaaggcccatttttgttaatgaaaatgaaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="42300" stop="41154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42008" g_stop="41454" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E241488" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42008" e_stop="41454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTGCAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACA-TTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATAGAAAGGAAATTAACTATTAAGGCCAATTTTTGTTAATGAAAATGAAATATG</genome_strand>
        <mrna_strand>TTCTGTTAAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACATTTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAAAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATAGAAAGGAAATTAACTATTAAGGCCCATTTTTGTTAATGAAAATGAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E377326" ref_strand="+" ref_description="SGN-E377326 [TUS-21-A18]">
      <seq>ttctgttaagatacaattttcaagtcagctactttactttttgatcaaatctggcttaatcttctcaaggttgtttcttccaattttccaggttagctacttcttcaattctccgtctaacatttttttttttgaatgttgtctgatccgtgtctatctattttgggagagctagctcagatacgagggaaacattcctatattccttactgccatctttatatgtaaaaggatatctttcttgacgtttggttatgataaatatatttctctaagttcttttgttgcaatttttgcattgaaatcaatcttctcttaggagttggaattggaagtgaccaagcatatgcgactcataccctatcgctctgctaagtaaggctcttaacaaaaggaaggtaaaatcgatattggttgtcaattacaacagcaagtccaaacttttattgttttaggtatattggctccctgacagtaccacaggatgttatctggaatattaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="42300" stop="41205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42008" g_stop="41505" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E377326" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42008" e_stop="41505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTGCAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACA-TTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATA</genome_strand>
        <mrna_strand>TTCTGTTAAGATACAATTTTCAAGTCAGCTACTTTACTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACATTTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAAGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTACAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E231937" ref_strand="+" ref_description="SGN-E231937 [cLED-7-L8]">
      <seq>ttctgttaagttacaattttcaagtcagctactttagtttttgatcaaatctggcttaatcttctgaaggttgtttcttccaattttccaggttagctacttcttcaattctccgtctaacatttttttttttgaatgttgtctgatccgcgtctatctattttgggagagctagctcagatacgagggaaacattcctatattccttactgccatctttatatgtaaaaggatatctttcttgacgtttggttatgataaatatatttctctaagttcttttgttgcaatttttgcattgaaatcaatcttctcttaggagttggaattggaagtgaccaagcatatgcgactcataccctatcgctctgctaagtagggctcttaacaaaaggaaggtaaaatcgatattggttgtcaattagaacagcaagtccaaacttttattgttttaggtatattggctccctgacagtaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="42300" stop="41229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42008" g_stop="41529" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E231937" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42008" e_stop="41529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTGCAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACA-TTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCAC</genome_strand>
        <mrna_strand>TTCTGTTAAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTGAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACATTTTTTTTTTTGAATGTTGTCTGATCCGCGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E261896" ref_strand="-" ref_description="SGN-E261896 [cLEG-61-J4]">
      <seq>aatcagatggagattttgtaaaggagggggagcaggaagctttgaatgtgttacgcgtgagttttctaacttttcttttcgtactgtttgctttctggtacttcgtttaacatcatctttgcgtttcactgaggtgactgcatcctggtaatgagcttgttcagaagctgtcagtgccatcatttcccctccattgttcaatttttccgctgatattggtggaaaataactaagtgaagaatcgacagagggcttttgttctgccatctttttaagaacatcttgattctcatcctagttttctctgccagaggagctgctaaatccgcttcacctgcaatgttctgataatcaaataattcttgaaagcgatcatttgtgtcctcatgcgcatgaactgtgacaaatccggccactgactcagatttggactgctgcaataagttaaaaccataagtgataaagaaaatgtgggagaggaaggtagcacaacataagcggctgcagtagagcaacagaagtgacgggaagaaagacagtggaaattgatacctcattctctgatccactgcaagaagcggtagatgatgatccagtctgtgttctactggcaggagacattggtactctggttctagcactcattccaggtataggattcatcagacaaaacgaacttttcaagcaaaaacgaggcaataatccacaaactttggtaggtagatttccatcataacaactatcatcatcactttcttcttcaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="55477" stop="58913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55777" g_stop="56073" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56074" i_stop="56152" i_length="79">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.527" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56153" g_stop="56641" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="785" r_length="489" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E261896" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261896" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55777" e_stop="56073"/>
          <exon e_start="56153" e_stop="56641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGATGGAGATTTTGGTAAAGGAGGGGGAGCAGGAAGCTTTGAATGTGTTACGCGTGAGTTTTCTAACTTTTCTTTTCGTACTGTTTGCTTTCTGGTACTTCGTTTAACATCATCTTTGCGTTTCACTGAGGTGACTGCATCCTGGTAATGAGCTTGTTCAGAAGCTGTCAGTGCCATCATTTCCCCTCCATTGTTCAATTTTTCCGCTGATATTGGTGGAAAATAACTAAGTGAAGAATCGACAGAGGGCTTTTGTTCTGCCATCTTTTTAAGAACATCTTGATTCTCATCCTGTAAGTTAAATGGTCTCTCCGCTTTAGGAGGTGATTTCATAATTGGAGATTCCACCTTATGTACAATATCTACATGCAGAGTTTTCTCTGCCAGAGGAGCTGCTAAATCCGCTTCACCTGCAATGTTCTGATAATCAAATAATTCTTGAAAGCGATCATTTGTGTCCTCATGCGCATGAACTGTGACAAATCCGGCCACTGACTCAGATTTGGACTGCTGCAATAAGTTAAAACCATAAGTGATAAAGAAAATGTGGGAGAGGAAGGTAGCACAACATAAGCGGCTGCAGTAGAGCAACAGAAGTGACGGGAAGAAAGACAGTGGAAATTGATACCTCATTCTCTGATCCACTGCAAGAAGCGGTAGATGATGATCCAGTCTGTGTTCTACTGGCAGGAGACATTGGTACTCTGGTTCTAGCACTCATTCCAGGTATAGGATTCATCAGACAAAACGAACTTTTCAAGCAAAAACGAGGCAATAATCCACAAACTTTGGTAGGTAGATTTCCATCATAACAACTATCATCATCACTTTCTTCTTCATAGTTATCATGGAATTGGGAAT</genome_strand>
        <mrna_strand>AATCAGATGGAGATTTT-GTAAAGGAGGGGGAGCAGGAAGCTTTGAATGTGTTACGCGTGAGTTTTCTAACTTTTCTTTTCGTACTGTTTGCTTTCTGGTACTTCGTTTAACATCATCTTTGCGTTTCACTGAGGTGACTGCATCCTGGTAATGAGCTTGTTCAGAAGCTGTCAGTGCCATCATTTCCCCTCCATTGTTCAATTTTTCCGCTGATATTGGTGGAAAATAACTAAGTGAAGAATCGACAGAGGGCTTTTGTTCTGCCATCTTTTTAAGAACATCTTGATTCTCATCCT...............................................................................AGTTTTCTCTGCCAGAGGAGCTGCTAAATCCGCTTCACCTGCAATGTTCTGATAATCAAATAATTCTTGAAAGCGATCATTTGTGTCCTCATGCGCATGAACTGTGACAAATCCGGCCACTGACTCAGATTTGGACTGCTGCAATAAGTTAAAACCATAAGTGATAAAGAAAATGTGGGAGAGGAAGGTAGCACAACATAAGCGGCTGCAGTAGAGCAACAGAAGTGACGGGAAGAAAGACAGTGGAAATTGATACCTCATTCTCTGATCCACTGCAAGAAGCGGTAGATGATGATCCAGTCTGTGTTCTACTGGCAGGAGACATTGGTACTCTGGTTCTAGCACTCATTCCAGGTATAGGATTCATCAGACAAAACGAACTTTTCAAGCAAAAACGAGGCAATAATCCACAAACTTTGGTAGGTAGATTTCCATCATAACAACTATCATCATCACTTTCTTCTTCAAAAAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E259428" ref_strand="+" ref_description="SGN-E259428 [cLEG-43-N22]">
      <seq>tgactcagatttggactgctgcaataagttaaaaccataagtgataaagaaaatgtgggagaggaaggtagcacaacataagcggctgcagtagagcaacagaagtgacgggaagaaagacagtggaaattgatacctcattctctgatccactgcaagaagcggtagatgatgatccagtctgtgttctactggcaggagacattggtactctggttctagcactcattccaggtataggattcatcagacaaaacgaacttttcaagcaaaaacgaggcaataatccacaaactttggtaggtagatttccatcataacaactatcatcatcactttcttcttcatagttatcatggaattgggaataacgaagtgcaaaactaggtccatagcgcagctgaggcctcttatccccatttagtactttcttgagttgtcttggttgctcctgaacagctggttgcttcctgggagcatactgaggcgtttctaaagacttttctgaagccatggccttggctgctggcagaaaccgatcaatcatgaaatctctagcttgtggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="55973" stop="57140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56273" g_stop="56840" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E259428" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56273" e_stop="56840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTCAGATTTGGACTGCTGCAATAAGTTAAAACCATAAGTGATAAAGAAAATGTGGGAGAGGAAGGTAGCACAACATAAGCGGCTGCAGTAGAGCAACAGAAGTGACGGGAAGAAAGACAGTGGAAATTGATACCTCATTCTCTGATCCACTGCAAGAAGCGGTAGATGATGATCCAGTCTGTGTTCTACTGGCAGGAGACATTGGTACTCTGGTTCTAGCACTCATTCCAGGTATAGGATTCATCAGACAAAACGAACTTTTCAAGCAAAAACGAGGCAATAATCCACAAACTTTGGTAGGTAGATTTCCATCATAACAACTATCATCATCACTTTCTTCTTCATAGTTATCATGGAATTGGGAATAACGAAGTGCAAAACTAGGTCCATAGCGCAGCTGAGGCCTCTTATCCCCATTTAGTACTTTCTTGAGTTGTCTTGGTTGCTCCTGAACAGCTGGTTGCTTCCTGGGAGCATACTGAGGCGTTTCTAAAGACTTTTCTGAAGCCATGGCCTTGGCTGCTGGCAGAAACCGATCAATCATGAAATCTCTAGCTTGTGGATC</genome_strand>
        <mrna_strand>TGACTCAGATTTGGACTGCTGCAATAAGTTAAAACCATAAGTGATAAAGAAAATGTGGGAGAGGAAGGTAGCACAACATAAGCGGCTGCAGTAGAGCAACAGAAGTGACGGGAAGAAAGACAGTGGAAATTGATACCTCATTCTCTGATCCACTGCAAGAAGCGGTAGATGATGATCCAGTCTGTGTTCTACTGGCAGGAGACATTGGTACTCTGGTTCTAGCACTCATTCCAGGTATAGGATTCATCAGACAAAACGAACTTTTCAAGCAAAAACGAGGCAATAATCCACAAACTTTGGTAGGTAGATTTCCATCATAACAACTATCATCATCACTTTCTTCTTCATAGTTATCATGGAATTGGGAATAACGAAGTGCAAAACTAGGTCCATAGCGCAGCTGAGGCCTCTTATCCCCATTTAGTACTTTCTTGAGTTGTCTTGGTTGCTCCTGAACAGCTGGTTGCTTCCTGGGAGCATACTGAGGCGTTTCTAAAGACTTTTCTGAAGCCATGGCCTTGGCTGCTGGCAGAAACCGATCAATCATGAAATCTCTAGCTTGTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E260000" ref_strand="+" ref_description="SGN-E260000 [cLEG-51-J18]">
      <seq>cgagtttttttttttttttttttgaagaagaaagtgatgatgatagttgttatgatggaaatctacctaccaaagtttgtggattattgcctcgtttttgcttgaaaagttcgttttgtctgatgaatcctatacctggaatgagtgctagaaccagagtaccaatgtctcctgccagtagaacacagactggatcatcatctaccgcttcttgcagtggatcagagaatgaggtatcaatttccactgtctttcttcccgtcacttctgttgctctactgcagccgcttatgttgtgctaccttcctctcccacattttctttatcacttatggttttaacttattgcagcagtccaaatctgagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="58913" stop="55973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56641" g_stop="56273" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E260000" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56641" e_stop="56273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCCAATTCCATGATAACTATGAAGAAGAAAGTGATGATGATAGTTGTTATGATGGAAATCTACCTACCAAAGTTTGTGGATTATTGCCTCGTTTTTGCTTGAAAAGTTCGTTTTGTCTGATGAATCCTATACCTGGAATGAGTGCTAGAACCAGAGTACCAATGTCTCCTGCCAGTAGAACACAGACTGGATCATCATCTACCGCTTCTTGCAGTGGATCAGAGAATGAGGTATCAATTTCCACTGTCTTTCTTCCCGTCACTTCTGTTGCTCTACTGCAGCCGCTTATGTTGTGCTACCTTCCTCTCCCACATTTTCTTTATCACTTATGGTTTTAACTTATTGCAGCAGTCCAAATCTGAGTCA</genome_strand>
        <mrna_strand>CGAGTTTTTTTTTTTTTTTTTTTGAAGAAGAAAGTGATGATGATAGTTGTTATGATGGAAATCTACCTACCAAAGTTTGTGGATTATTGCCTCGTTTTTGCTTGAAAAGTTCGTTTTGTCTGATGAATCCTATACCTGGAATGAGTGCTAGAACCAGAGTACCAATGTCTCCTGCCAGTAGAACACAGACTGGATCATCATCTACCGCTTCTTGCAGTGGATCAGAGAATGAGGTATCAATTTCCACTGTCTTTCTTCCCGTCACTTCTGTTGCTCTACTGCAGCCGCTTATGTTGTGCTACCTTCCTCTCCCACATTTTCTTTATCACTTATGGTTTTAACTTATTGCAGCAGTCCAAATCTGAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E312772" ref_strand="+" ref_description="SGN-E312772 [cTOA-8-P17]">
      <seq>tggctcatgccgttctcgagcaatactggggcaaattatgggcggtttctgaaggtgttgaaagtcaacttgttgtggggttgcctgctgatggagcatctgaatgtgtagactcatctaaacatatgtctgttatagttgcgttaaattctgcggaacagcttgtcgaccttatgcgtttttctggtcaacttattcctcgatcagctaaggctattttcatgacccacatatctgctgctggtaagagtgattctgcagaaaatgatccctgtgattcaccatcgtagcctaatagtcctctttatgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="72543" stop="73636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72843" g_stop="72918" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.868"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72919" i_stop="73100" i_length="182">
            <donor d_prob="0.941" d_score="0.80"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73101" g_stop="73336" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="313" r_length="236" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E312772" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72843" e_stop="72918"/>
          <exon e_start="73101" e_stop="73336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTCATGCCGTTCTCGAGCAATACT-GTTCAAAGTATTAGCGGATACTGTAGGTGTTGAAAGTCAACTTGTTGTGGTAAGCTTTTCTCTGAAGGAAAAACAATTGTAGTTCTCTTGTTTTTGTGAATTCCATGTTTGACCTCTAAACTCATACTGAAAAATGTTGTATTGCTACGTATGAATTCTCACTTCATTTTCTTTCTTTGCCATACTTTTCGTGAAACTTAACCTTATAATATTTCTGTGTTTCTTAATTAGGGGTTGCCTGCTGATGGAGCTTCTGAATGTGTAGACTCATCTAAACATATGTCTGTTATAGTTGTGTTAAATTCTGTGGAACTGCTTGTCGACCTTATGCGTTTTCCTGGTCAACTTATTCCTCGATCAGCAAAGGCTATTTTCATGACCCACATATCTGCTGCTGGAGAGAGTGATTCTGCAGAAAATGATTCCTGTGATTCACCATTGGAGCCTAATAGTCCTCTTTATGGGTT</genome_strand>
        <mrna_strand>TGGCTCATGCCGTTCTCGAGCAATACTGGGGCAAATTATGGGCGGTTTCTGAAGGTGTTGAAAGTCAACTTGTTGTG......................................................................................................................................................................................GGGTTGCCTGCTGATGGAGCATCTGAATGTGTAGACTCATCTAAACATATGTCTGTTATAGTTGCGTTAAATTCTGCGGAACAGCTTGTCGACCTTATGCGTTTTTCTGGTCAACTTATTCCTCGATCAGCTAAGGCTATTTTCATGACCCACATATCTGCTGCTGGTAAGAGTGATTCTGCAGAAAATGATCCCTGTGATTCACCATCGTAGCCTAATAGTCCTCTTTATGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E339525" ref_strand="+" ref_description="SGN-E339525 [cTOE-16-A2]">
      <seq>tcctggtcaacttattcctcgatcagcaaaggctattttcatgacccacatatctgctgctggagagagtgattctgcagaaaatgattcctgtgattcaccattggagcctaatagtcctctttatgggttttcagagagaattgatcctgagagttccgagaaagatgatgcccttcaatgccagaggagactagaagcatcttcaaatgccgcaggaccttcattgaggaatatgatgttgcggtctacttccattgacagaaaattgagtttctcgcacagcgaacccaatattgctactgcagcttggagaaggagccgaaggaaagttattactgaacaaaggactgctagttcaagtccggagcatccttcatttcgagcacgtgccaggtctatgcttagtggtgataccaaaacattcaaagattattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="72905" stop="75643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73205" g_stop="73360" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73361" i_stop="73585" i_length="225">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73586" g_stop="73702" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="273" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73703" i_stop="73859" i_length="157">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73860" g_stop="73949" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="363" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73950" i_stop="75268" i_length="1319">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75269" g_stop="75343" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="438" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E339525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73205" e_stop="73360"/>
          <exon e_start="73586" e_stop="73702"/>
          <exon e_start="73860" e_stop="73949"/>
          <exon e_start="75269" e_stop="75343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGGTCAACTTATTCCTCGATCAGCAAAGGCTATTTTCATGACCCACATATCTGCTGCTGGAGAGAGTGATTCTGCAGAAAATGATTCCTGTGATTCACCATTGGAGCCTAATAGTCCTCTTTATGGGTTTTCAGAGAGAATTGATCCTGAGAGGTTAGATCAAAATCTCTCTCACTTTTTAATTAATATTGTTCAGGTTTAATTGCTATAATCCTTTTCATCTTTTTCTGTTGCATTATCATTGTCGACATTTTCTGTAGCAATATCATTGTCAACATGTTGTAATCTGCAGGAATTCGTTTTTTGCGGGTGAAGATCCAGTTTCATTTCTTCTTTTCCTATCTTCATTTTTAATTGATCTTTTTATATATTCTACAGTTCCGAGAAAGATGATGCCCTTCAATGCCAGAGGAGACTAGAAGCATCTTCAAATGCCGCAGGACCTTCATTGAGGAATATGATGTTGCGGTCTACTTCCATTGACAGAAAATTGAGGTATTATTCACTCGGCTAAGAATCATGCTTTTGCATAATAACATTGACATTTCATTGTATCCTCTTTGAGCAAAGGAAATTCGGAATGTTCATCTGTTTTTTTACTCTTTCTGTTCTGTGGATCTTATTTCCTATTGGATCTATTTTTATGTATCAGTTTCTCGCACAGCGAACCCAATATTGCTACTGCAGCTTGGAGAAGGAGCCGAAGGAAAGTTATTACTGAACAAAGGACTGCTAGTTCAAGGTTACTTTTCTTTCTTTTTGAAGTCAATTCAAGGTTTACTTTTTTTTTTTTTTTGATGAAGTTAGTTCAAGGTTTACTTTTCTATGGCCATGACTCCTATTTCAAATTTTGCCTTACATATGCAATGAAGCTCTTTATCAGTTTTCCAATTTTGGATGAGATCATACCAACAAAATTCACTCTGGATCAAATCATTTTTCTGATCTTTACAGTTAACTTACTAAAATAAAATCATTTGAAGTCCTCTGATTACAGTTTTCCCCTGCGTATGTGTATAGTTGACATGCAAATAGGTGTTCCGTTTTGATCTGGTGACCTTAGTTTTTAAATTCTGATTAGAACTTAATGAACTAAGAAAATGTCCTTGCACAAGCATGTGTATAATCAGAATAATGTGCAGGGCAAGCAATATTTAGCTTAATAAAGTCTATTTATAATGCTGGGTAGCTTTAACTGCAGAGTTCGATGTGCCTTTGAAACATGGCATTTAAAATCTTTGTGTTACGAGATCTTGTATGTAATGTGTGTTTTTGTTGGCGAATTTTCAAGTGTCTCAAAATTACTTGGTTTGCATTACACAGTACTGAATTTCATTAGTTTAAAATCTGAACTTCATATTGTGATGCAATAGTTGGCTTTTTTCAAAATGATCCTGAAAATGGAGAACATGTATATGTTCATTATCACTGTTAGTCTGTTACTAGTTACTAGAAAGTGATATGAAATTTACTAGCTTCCTGGATATCTAAAAGTAGCTTGTTGAGAAATTGAACATCATGCTTTGTTTGGACTATTACATTAAATAGTCAGAAACAACTTTTAAGCATTTGTTCTTTTCTATGATTTATATTTATAGGGAACAAATTATTTTGTTTTTGATAGGTAACAAAGGGAACAAACATGGCATAAGGTGTCATTCACCACTTGCACAAATTTGTGCGGTTGTTTACTTGTTTCTGAACAGTTAGTTAGCTTGGTTTTTTTTTTCTTTTTGAGCTGGTTCTAGTGTGACTAGTAGGATATTTGAATTGTTTTAATTTTAATCATTGGTCTTCTTCTAATTTATTTATTTACTCTTGTTACTGCTCCACTTTGTGTTTAATTTGTAACACCACTTTGAATAAGCTATATTGAACTGACAGTTTTAGAAGGCTTGATGATTTCACTACTTTTTGTCGTTGTTTCAAACATGTCTTATGATCCAAAAATGAATCTGGCATCTCACATGTACTTGTATACCATTTATTTATTTTACTGTTCATTTTACTGTAATGGATGGTTTCGTCTAATTATGTTCTTCTCTCACTTCAAATCTCTAGTCCGGAGCATCCTTCATTTCGAGCACGTGCCAGGTCTATGCTTAGTGGTGATACCAAAACATTCAAAGATTATTC</genome_strand>
        <mrna_strand>TCCTGGTCAACTTATTCCTCGATCAGCAAAGGCTATTTTCATGACCCACATATCTGCTGCTGGAGAGAGTGATTCTGCAGAAAATGATTCCTGTGATTCACCATTGGAGCCTAATAGTCCTCTTTATGGGTTTTCAGAGAGAATTGATCCTGAGAG.................................................................................................................................................................................................................................TTCCGAGAAAGATGATGCCCTTCAATGCCAGAGGAGACTAGAAGCATCTTCAAATGCCGCAGGACCTTCATTGAGGAATATGATGTTGCGGTCTACTTCCATTGACAGAAAATTGAG.............................................................................................................................................................TTTCTCGCACAGCGAACCCAATATTGCTACTGCAGCTTGGAGAAGGAGCCGAAGGAAAGTTATTACTGAACAAAGGACTGCTAGTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGAGCATCCTTCATTTCGAGCACGTGCCAGGTCTATGCTTAGTGGTGATACCAAAACATTCAAAGATTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E747418" ref_strand="+" ref_description="SGN-E747418 [GI|47104544]">
      <seq>ggaggaacaagctatttctgcaaatcctctttgctgctgaaactttgcatcttcatcttcaacctctcgatcgttttcaactgaaaattagtccttaaggcaatgggtgatagtcagtattctttctcacttacaactttcagtccatctggaaagctggttcagattgagcatgcattgactgctgttggatctggccaaacatcattgggaattaaagcttctaatggtgttgtaattgctaccgagaagaaattaccatctatcttagttgatgaagcatctgtgcagaaaattcagactttgacatcaaatattggagttgtgtacagtggcatgggtcctgattctcgagttttggttcggaaaagtaggaagtcagctgagcaatattaccgactctataaagaaccaatccctgtcactcaactggtgagggaaactgctgctgtcatgcaggaattcacccaatcaggtggtgtaagaccatttggtgtttcactcttggttgcgggttttgatgacaagggtccacaactatatcaggttgatccatctggttcgtacttctcttggaaggcttcagcaatgggaaagaatgtctctaatgccaagacatttctcgagaagagatacacggaggaaatggagctcgatgatgctgtacacactgctatcctgacattgaaggagggatttgaaggacagatctccagcaaaaacattgagattggaattattggaacagacaaagtattcagaattctcactccaactgaaatagatgattacctacaggaagtagaatagattttcctttcagccaaaaaggaattggaagtagttgttggacaggaagcgcagctaggggcatagcacaagctcaactatgggaggttcttgctggtttgggtataatttgatgtttaatcaaaaactaaacttggttgtatgtattttggtcatgctatggtgttatttatgctctgatctgaaaagcttaatatgggcttttctcagtttcttaaattcacatattgttcaagtattaccttaaaacacacatcaaaaagagaaaaattacattcatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="103995" stop="97621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103695" g_stop="103624" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103623" i_stop="103115" i_length="509">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103114" g_stop="103044" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="143" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103043" i_stop="102949" i_length="95">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102948" g_stop="102872" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="220" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102871" i_stop="102413" i_length="459">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102412" g_stop="102348" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="285" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102347" i_stop="101664" i_length="684">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101663" g_stop="101617" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="332" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101616" i_stop="101272" i_length="345">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101271" g_stop="101196" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="408" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101195" i_stop="100858" i_length="338">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100857" g_stop="100790" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="476" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100789" i_stop="100093" i_length="697">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100092" g_stop="100023" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="546" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100022" i_stop="99789" i_length="234">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="99788" g_stop="99703" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="632" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="99702" i_stop="98830" i_length="873">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="98829" g_stop="98767" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="695" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="98766" i_stop="98403" i_length="364">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="98402" g_stop="98337" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="761" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="98336" i_stop="98253" i_length="84">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.730" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="98252" g_stop="97921" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="1093" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1094" polyA_stop="1106"/>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E747418" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1093</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103695" e_stop="103624"/>
          <exon e_start="103114" e_stop="103044"/>
          <exon e_start="102948" e_stop="102872"/>
          <exon e_start="102412" e_stop="102348"/>
          <exon e_start="101663" e_stop="101617"/>
          <exon e_start="101271" e_stop="101196"/>
          <exon e_start="100857" e_stop="100790"/>
          <exon e_start="100092" e_stop="100023"/>
          <exon e_start="99788" e_stop="99703"/>
          <exon e_start="98829" e_stop="98767"/>
          <exon e_start="98402" e_stop="98337"/>
          <exon e_start="98252" e_stop="97921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAACAAGCTATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATCGTATGTAAAATTTGATCTCTTATGCAATCGTAGATATAAATTGTCACAATGTTTTTTATTTTTCGCTTTAATTTACTTAGGTTTTATGCTTTTTTCCTTACTATTAAAATTATTCCTGTGTTATTTGATGCTTTTTTGGTTACTTTTTTATGTATTGAATAAAGAGATTGTGCACATTTTCTGATTAAATACGTGAATATTTCAATTTTTTGTTATACGAATCAGATATGAGAGAGATTAATCCGGGAGCAGCATACTTCGTTAGATCCCTGCAGCATTGTTAAAATTTAGCGATGAATATTAGTTTTAATGAAGTAGAAAAGAAGTGGAATATTTATTGGTGTTCAGTGAAGTTCTGGATATCGATTTTCGGTCTATTTACCTTTTGGTGAATTAGTTAATCATGGTTTAAAATAGTGAATTTGCAGTTTCAGTAATGATGTTAGTTAAGCTAGTGATTCTACTGTCTGACTTATACTGTTTTTGCTCGGAACGTTATCATTTTACAGGTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAGGTATAGGTTTATGAGATAGAACTTGTATGTATTGGATCAATTATATAGTTTCTACTCAATTTTGATGTCTGATATTGTAATATGCCGTGGCATAGTCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAGGTAACTCAAGGTCTAATTTAAATGCAAAGTTATTGATATGGCAATAGCGTTAACATATGTCTGCGATTATGTTCTATTCAGCATGTTCACTTGCTTTGTATTATAAAAAAGGTTATCGTAGAGAATGCCGAACAAGTTAACTCTGAAATATTTGAAACCGAATCTTGTAACATCGTTTTACTTCTAGTTGTTGATTTAAATGCTTTTGGCTCTGTAACATAGATGACTTGCATCCCCATACTGGGATTTTTAATTTAGTGAAGACTGAAGAATGTAGTTGTGACTTTATAAGCCAATAATACTATAATAGGATACACATGTCCTTCAGGTATTGTGGTGTGATTCTACTTCTCATTTAAGAGTTCCTTCTGGAGAAGTTTCAAGCTTTTGTTTTCCTAGCTCGATTAATAGTTGTGAAGTTCTTGTAGTGATTTTATATATCCAACTGTTTGATTGCAGCTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCTGTAAGTATATCCCGTAAAGTTTATCCTCTGTTGTCTATTTATGATAATGAATGTTCCTTGTATATTATAGTTGCCAGACTGACTGTTGATAGCTAATCAAATATAGTAGTGCTCTTATTTTTCTCTCTAAAGTTGATTCTAGTGATTTATTTTTATACTCTTAACTTTTTGTTGATAAAAATTTCCAATGACTGTGTTGGTGTGAGTAGTAGTTTGCAGTTTAGTAATAAGTTAGGCATAAGAGAAGATATCTTCTTTTTAGTTCAATCTATGAGTACCTGGTCTGATATCCAATTGAGCTTCATCAAGATTGAAACAAATGATGATTTTTTATTAAGTTTAGATAATTAGTCTGTTTGAATTTGCGTATGCATTGAAAATATATAAATTTTAGTAATGTTTACTTTACTGCTCTGTAGAGTTATATTCTAAATTATATTCACAAAAGCAGTTAGCCAGTTACCAGGTTACAACATACCAACAAGTGCATTCATGTTTGTAGTCTTTGGTGTTAAATTCGTATATTCTGTGGTTCGGTGATATTTATTTCTACCTATCACGTCTTGGAACTGCATGGGCATTCCAAGTGCCTTTTTGTTTTTGCTTTACATTCCTTAACCTTTGCCATGTTGCGTCTTCCTTTTAGTTTACCCTTCTACACCTGATTCTTTGAATGTATAACAGGTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAGGTACAATCTGTTATATGATAGAGCACAAAAAATTTCCTATGCCCATGGTGCTTTGTCCATAGTTGAATTGACAAATCGATTGGCGATTTGCCTTGCTTAGCTAGTTGCTATTCATTAGAACTTGAAACTAACAACTTGTTATACGTGGAAGGATGGTACCTATGAAAGCTGATATGGTTCTACTTCTGTTCCAAATTATCTTACAATATCCGTAAAGCATCAATATATGCCTTGCAAATGGTCTTAGTTCTCTGATATATCCTTCCACGGGGTGTTTTTATATGTTCTTGTGGTTACTGCATTACCTCTGGTGATCTCTCTAATACCAAAATTTACTCCTTGCAGTGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAAGTATGAATTAGCTTTCATCAAATCTCAATTCTATGATTCAAGTGCAGTATTTCCTTAATGATTCAAGTGTAATGTTACCACTCTGCCGGGTGATATTTGTACAATTGATATAACTGTCCTACTATTTTGCAATTTAAGATGCTTCTTCTTTGTATTGATGCTAACATATAAAGTTGCTGTCTAATCTTGCTCTTGCTATACGGAGGCAGAGGTTTTCTATTGGAGCTCCCTTTTCCTCTAACCTGCATTGTTTGTTTCACACTAGTGCTTTAATGTGATGTTGCTTTAGCATACTTTATTCCTTCTACATTTGCCTGATTTATCTATGTGGTGCATAGGAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGGGTAAGCACTCTTTTATTCCATACTTCCACTTCACTTGGAGGATCCTATAATATGTGCTGATCATATTTTAAATATCGAGAAACATGGTCAATAAGCATTCGTATTGTCAATCCCAACTTGTTTGGACCTGAGGTCTAGTTTTTGTTGTTGGATACCAATAGTTATCACTGACTAAACAATTCTATTTGTTACTCATTATTCATTAACAATATTTTAAGATTAATAACGTTCCTCTCTTTGCATTGTTATTTCTTACCTAGGTTTAGTAGGTGGATTTTTGAGTTTGGGTTAATTTCTAAAGGAATCGTTGTTGGATTACTGGGGCTGCACAAGCCTCCTTTATATAGGATGGAAGCAATGTGCACTACAGTTGTTGTAGTCATTTCTAATTTTTAGCTACTCTCCGGAAGCATTTCTGGAAGTGGAGGTTAAACTTGGCCTCTAAACTTTTTGGTTCTCTTGGATGTGCTCTCTTTTCATGTTAGAATATGAATTAATTGTTCTGTTGACGAAGATCAACACTTATGATTCATCAGACTATCAACTGTAGGGCAGGCAAAGCCATATCTTTCTTGAAACTAATCCAGATGCTCATCTGTATCTATGTGTGATTTTCTTTTGGATGTTCAAGAAAGAGGTCATTTTTAGTCTTCTTGGGCAATCCCTTACTTTTGTTTTTCTGTTTTCTCCGGTACAGTGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAGGTATGTTGTCTATCAGTGCTGGTGATCTCTCTGGTCACTTTCTGTTCTTGAGGTGTCTAATTTGGTGATCTATACTTCATGAGGTGAATTTACATAATTTGTATTGATTTTCTTCATGGTGTTTCACTTGTGGGAGCTTTTATTCTTTGTAAATTTTGTTTAATGAGCTGCAGCCTGCAGGTTCCTTTGTTGCTTGAACTCTTTTCATGTTCAGCTGTTTTTTTCTCATTTTAGGTTGATCCATCTGGTTCGTACTTCTCTTGGAAGGCTTCAGCAATGGGAAAGAATGTCTCTAATGCCAAGACATTTCTCGAGAAGAGGTGAATCCTTATTCATTTAAAAAAAGTTGATCGTTTATTCATAAAAATATTTAACCTCCTTTTTCTTCTTTTTAAATGCTATATTTTTACATTTACTGGTCTACAATCGAAGTTACTGTCTGATTTTATGTAACAATTACCAGTTTTAGAAAACTCATCTTAACCAGCTACCTCATGAGTTTGTAGCCCTAATAGTTTTGGTTAAACAAGAACAATAATCTCTCCTCAATAACCCACAGCTGTCTAATTCTTCATCCATTGATGGACTGTCTTGATCTTTTACTGTGCACCATCTTTATATCAACCTGCTACTGCTTCTTGCACTTCCTCTACTTTTACCAAAAGTTGCAAAAAGTAGTTGGAACAGCTTTTATGCAAGGGAGACATTGTTCACTTTGTGAGTGTGTCAATGATTTGCATCTGTTCTATTCTATTACTCTGGATGTGCTAAGGGTTATTACGCGAACCGAGTTGTAATTTATTAGCCTCATGGCATCAGAAGATGGGAGGGGGTGAAAAGGGAGGAAATCTATAAAGGTATGGGTTTTATTGCATTTCTACAAATGTGCTAGGAAGAGAATTGTTGGTAATGTACAATTGATTTGCTTGAAACAAGTAGCCAGCAGAGGGCTTCTGCCCATACTGCTTTGTGACATCAGTTGGTGCTGGCGATTGGAGTTGTAGGTCAAACTTTGACATACCTTTGAAGGATGTTAACCATTTTTCTGTCCCACAATGTCAAATGTTGTCTGCATGTTGGAACATTGTCTCATTGGCCAACTACCAAGCCTATTAATTTGGGGTGCTTTTCAACCCGTTTGATTACTGGTGAAGTATTATTAAAGTAAAACATAACGTTCCTGTTCCACTCAGATACACGGAGGAAATGGAGCTCGATGATGCTGTACACACTGCTATCCTGACATTGAAGGAGGGGTAAGATTAATTTATTCCTATATGCAGGAGCTGTCTGTTCTATATGAAAATATCCCCTTTGATGGGACGTGTTTTTTCAACCCTCTAGATGATTTTGGTGTCCTCTATATTCACATAATGTTTGTTGGCACCACAAAAAAAAAAGGATTTAAATCTTGTTCGTCATGTTAAATATATAGTATCAGAAATATCATGCACTTGAACTTGTCCAAAATTGCGAGACCATTCCTATTGCTTGCTTGTTGTGCAGTAATGGTTCTCAATGCAAAGTTTCTTTATCGACGTTCTGCCCCCCTCCCCTCTCCCTGAACAATAATAGTAAAAGAATCCTCTAAAATAACTCTTATTTGGTGTGTTAATCCAGATTTGAAGGACAGATCTCCAGCAAAAACATTGAGATTGGAATTATTGGAACAGACAAAGTATTCAGGCAAGTGTCTTCTTGTCTTTACAGTTTTTAACATGAGTTCACTCTGTTAGCCGGTTACTAAAACGGTCGTTCATCTCATTGCAGAATTCTCACTCCAACTGAAATAGATGATTACCTACAGGAAGTAGAATAGATTTTCCTTTCAGCCAAAAAGGAATTGGAAGTAGTTGTTGGACAGGAAGCGCAGCTAGGGGCATAGCACAAGCTCAACTATGGGAGGTTCTTGCTGGTTTGGGTATAATTTGATGTTTAATCAAAAACTAAACTTGGTTGTATGTATTTTGGTCATGCTATGGTGTTATTTATGCTCTGATCTGAAAAGCTTAATATGGGCTTTTCTCAGTTTCTTAAATTCACATATTGTTCAAGTATTACCTTAAAACACACATCAAAAAGAGAAAAATTACATTCATGAA</genome_strand>
        <mrna_strand>GGAGGAACAAGCTATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAG...............................................................................................TCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAG.........................................................................................................................................................................................................................................................................................................................................................TGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAA..................................................................................................................................................................................................................................................................................................................................................GAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAG..........................................................................................................................................................................................................................................GTTGATCCATCTGGTTCGTACTTCTCTTGGAAGGCTTCAGCAATGGGAAAGAATGTCTCTAATGCCAAGACATTTCTCGAGAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACGGAGGAAATGGAGCTCGATGATGCTGTACACACTGCTATCCTGACATTGAAGGAGGG............................................................................................................................................................................................................................................................................................................................................................................ATTTGAAGGACAGATCTCCAGCAAAAACATTGAGATTGGAATTATTGGAACAGACAAAGTATTCAG....................................................................................AATTCTCACTCCAACTGAAATAGATGATTACCTACAGGAAGTAGAATAGATTTTCCTTTCAGCCAAAAAGGAATTGGAAGTAGTTGTTGGACAGGAAGCGCAGCTAGGGGCATAGCACAAGCTCAACTATGGGAGGTTCTTGCTGGTTTGGGTATAATTTGATGTTTAATCAAAAACTAAACTTGGTTGTATGTATTTTGGTCATGCTATGGTGTTATTTATGCTCTGATCTGAAAAGCTTAATATGGGCTTTTCTCAGTTTCTTAAATTCACATATTGTTCAAGTATTACCTTAAAACACACATCAAAAAGAGAAAAATTACATTCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E373682" ref_strand="-" ref_description="SGN-E373682 [TUS-33-G2]">
      <seq>ctggtgagggaaactgctgctgtcatgcaggaattcacccaatcaggtggtgtaagaccatttggtgtttcactcttggttgcgggttttgatgacaagggtccacaactatatcaggttgatccatctggttcgtacttctcttggaaggcttcagcaatgggaaagaatgtctctaatgccaagacatttctcgagaagagatacacggaggaaatggagctcgatgatgctgtacacactgctatcctgacattgaaggagggatttgaaggacagatctccagcaaaaacattgagattggaattattggaacagacaaagtattcagaattctcactccaactgaaatagatgattacctacaggaagtagaatagattttcctttcagccaaaaaggaattggaagtagttgttggacaggaagcgcagctaggggcatagcacaagctcaactatgggaggttcttgctggtttgggtataatttgatgtttaatcaaaaactaaacttggttgtatgtattttggtcatgctatggtgttatttatgctctgatctgaaaagcttaatatgggcttttctcagtttcttaaattcacatattgttcaagtattaccttaaaacacacatcaaaaagagaaaaattacattcatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="101136" stop="97621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100836" g_stop="100790" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100789" i_stop="100093" i_length="697">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100092" g_stop="100023" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="117" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100022" i_stop="99789" i_length="234">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99788" g_stop="99703" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="203" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99702" i_stop="98830" i_length="873">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98829" g_stop="98767" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="266" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98766" i_stop="98403" i_length="364">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98402" g_stop="98337" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="332" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98336" i_stop="98253" i_length="84">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.730" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98252" g_stop="97921" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="664" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E373682" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373682" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100836" e_stop="100790"/>
          <exon e_start="100092" e_stop="100023"/>
          <exon e_start="99788" e_stop="99703"/>
          <exon e_start="98829" e_stop="98767"/>
          <exon e_start="98402" e_stop="98337"/>
          <exon e_start="98252" e_stop="97921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGGGTAAGCACTCTTTTATTCCATACTTCCACTTCACTTGGAGGATCCTATAATATGTGCTGATCATATTTTAAATATCGAGAAACATGGTCAATAAGCATTCGTATTGTCAATCCCAACTTGTTTGGACCTGAGGTCTAGTTTTTGTTGTTGGATACCAATAGTTATCACTGACTAAACAATTCTATTTGTTACTCATTATTCATTAACAATATTTTAAGATTAATAACGTTCCTCTCTTTGCATTGTTATTTCTTACCTAGGTTTAGTAGGTGGATTTTTGAGTTTGGGTTAATTTCTAAAGGAATCGTTGTTGGATTACTGGGGCTGCACAAGCCTCCTTTATATAGGATGGAAGCAATGTGCACTACAGTTGTTGTAGTCATTTCTAATTTTTAGCTACTCTCCGGAAGCATTTCTGGAAGTGGAGGTTAAACTTGGCCTCTAAACTTTTTGGTTCTCTTGGATGTGCTCTCTTTTCATGTTAGAATATGAATTAATTGTTCTGTTGACGAAGATCAACACTTATGATTCATCAGACTATCAACTGTAGGGCAGGCAAAGCCATATCTTTCTTGAAACTAATCCAGATGCTCATCTGTATCTATGTGTGATTTTCTTTTGGATGTTCAAGAAAGAGGTCATTTTTAGTCTTCTTGGGCAATCCCTTACTTTTGTTTTTCTGTTTTCTCCGGTACAGTGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAGGTATGTTGTCTATCAGTGCTGGTGATCTCTCTGGTCACTTTCTGTTCTTGAGGTGTCTAATTTGGTGATCTATACTTCATGAGGTGAATTTACATAATTTGTATTGATTTTCTTCATGGTGTTTCACTTGTGGGAGCTTTTATTCTTTGTAAATTTTGTTTAATGAGCTGCAGCCTGCAGGTTCCTTTGTTGCTTGAACTCTTTTCATGTTCAGCTGTTTTTTTCTCATTTTAGGTTGATCCATCTGGTTCGTACTTCTCTTGGAAGGCTTCAGCAATGGGAAAGAATGTCTCTAATGCCAAGACATTTCTCGAGAAGAGGTGAATCCTTATTCATTTAAAAAAAGTTGATCGTTTATTCATAAAAATATTTAACCTCCTTTTTCTTCTTTTTAAATGCTATATTTTTACATTTACTGGTCTACAATCGAAGTTACTGTCTGATTTTATGTAACAATTACCAGTTTTAGAAAACTCATCTTAACCAGCTACCTCATGAGTTTGTAGCCCTAATAGTTTTGGTTAAACAAGAACAATAATCTCTCCTCAATAACCCACAGCTGTCTAATTCTTCATCCATTGATGGACTGTCTTGATCTTTTACTGTGCACCATCTTTATATCAACCTGCTACTGCTTCTTGCACTTCCTCTACTTTTACCAAAAGTTGCAAAAAGTAGTTGGAACAGCTTTTATGCAAGGGAGACATTGTTCACTTTGTGAGTGTGTCAATGATTTGCATCTGTTCTATTCTATTACTCTGGATGTGCTAAGGGTTATTACGCGAACCGAGTTGTAATTTATTAGCCTCATGGCATCAGAAGATGGGAGGGGGTGAAAAGGGAGGAAATCTATAAAGGTATGGGTTTTATTGCATTTCTACAAATGTGCTAGGAAGAGAATTGTTGGTAATGTACAATTGATTTGCTTGAAACAAGTAGCCAGCAGAGGGCTTCTGCCCATACTGCTTTGTGACATCAGTTGGTGCTGGCGATTGGAGTTGTAGGTCAAACTTTGACATACCTTTGAAGGATGTTAACCATTTTTCTGTCCCACAATGTCAAATGTTGTCTGCATGTTGGAACATTGTCTCATTGGCCAACTACCAAGCCTATTAATTTGGGGTGCTTTTCAACCCGTTTGATTACTGGTGAAGTATTATTAAAGTAAAACATAACGTTCCTGTTCCACTCAGATACACGGAGGAAATGGAGCTCGATGATGCTGTACACACTGCTATCCTGACATTGAAGGAGGGGTAAGATTAATTTATTCCTATATGCAGGAGCTGTCTGTTCTATATGAAAATATCCCCTTTGATGGGACGTGTTTTTTCAACCCTCTAGATGATTTTGGTGTCCTCTATATTCACATAATGTTTGTTGGCACCACAAAAAAAAAAGGATTTAAATCTTGTTCGTCATGTTAAATATATAGTATCAGAAATATCATGCACTTGAACTTGTCCAAAATTGCGAGACCATTCCTATTGCTTGCTTGTTGTGCAGTAATGGTTCTCAATGCAAAGTTTCTTTATCGACGTTCTGCCCCCCTCCCCTCTCCCTGAACAATAATAGTAAAAGAATCCTCTAAAATAACTCTTATTTGGTGTGTTAATCCAGATTTGAAGGACAGATCTCCAGCAAAAACATTGAGATTGGAATTATTGGAACAGACAAAGTATTCAGGCAAGTGTCTTCTTGTCTTTACAGTTTTTAACATGAGTTCACTCTGTTAGCCGGTTACTAAAACGGTCGTTCATCTCATTGCAGAATTCTCACTCCAACTGAAATAGATGATTACCTACAGGAAGTAGAATAGATTTTCCTTTCAGCCAAAAAGGAATTGGAAGTAGTTGTTGGACAGGAAGCGCAGCTAGGGGCATAGCACAAGCTCAACTATGGGAGGTTCTTGCTGGTTTGGGTATAATTTGATGTTTAATCAAAAACTAAACTTGGTTGTATGTATTTTGGTCATGCTATGGTGTTATTTATGCTCTGATCTGAAAAGCTTAATATGGGCTTTTCTCAGTTTCTTAAATTCACATATTGTTCAAGTATTACCTTAAAACACACATCAAAAAGAGAAAAATTACATTCATGAA</genome_strand>
        <mrna_strand>CTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAG..........................................................................................................................................................................................................................................GTTGATCCATCTGGTTCGTACTTCTCTTGGAAGGCTTCAGCAATGGGAAAGAATGTCTCTAATGCCAAGACATTTCTCGAGAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACGGAGGAAATGGAGCTCGATGATGCTGTACACACTGCTATCCTGACATTGAAGGAGGG............................................................................................................................................................................................................................................................................................................................................................................ATTTGAAGGACAGATCTCCAGCAAAAACATTGAGATTGGAATTATTGGAACAGACAAAGTATTCAG....................................................................................AATTCTCACTCCAACTGAAATAGATGATTACCTACAGGAAGTAGAATAGATTTTCCTTTCAGCCAAAAAGGAATTGGAAGTAGTTGTTGGACAGGAAGCGCAGCTAGGGGCATAGCACAAGCTCAACTATGGGAGGTTCTTGCTGGTTTGGGTATAATTTGATGTTTAATCAAAAACTAAACTTGGTTGTATGTATTTTGGTCATGCTATGGTGTTATTTATGCTCTGATCTGAAAAGCTTAATATGGGCTTTTCTCAGTTTCTTAAATTCACATATTGTTCAAGTATTACCTTAAAACACACATCAAAAAGAGAAAAATTACATTCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E275817" ref_strand="+" ref_description="SGN-E275817 [cLEN-18-J1]">
      <seq>gatttgaaggacagatctccagcaaaaacattgagattggaattattggaacagacaaagtattcagaattctcactccaactgaaatagatgattacctacaggaagtagaatagattttcctttcagccaaaaaggaattggaagtagttgttggacaggaagcgcagctaggggcatagcacaagctcaactatgggaggttcttgctggtttgggtataatttgatgtttaatcaaaaactaaacttggttgtatgtattttggtcatgctatggtgttatttatgctctgatctgaaaagcttaatatgggcttttctcagtttcttaaattcacatattgttcaagtatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="98703" stop="97663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98403" g_stop="98337" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98336" i_stop="98253" i_length="84">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.730" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98252" g_stop="97963" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="357" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E275817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98403" e_stop="98337"/>
          <exon e_start="98252" e_stop="97963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAAGGACAGATCTCCAGCAAAAACATTGAGATTGGAATTATTGGAACAGACAAAGTATTCAGGCAAGTGTCTTCTTGTCTTTACAGTTTTTAACATGAGTTCACTCTGTTAGCCGGTTACTAAAACGGTCGTTCATCTCATTGCAGAATTCTCACTCCAACTGAAATAGATGATTACCTACAGGAAGTAGAATAGATTTTCCTTTCAGCCAAAAAGGAATTGGAAGTAGTTGTTGGACAGGAAGCGCAGCTAGGGGCATAGCACAAGCTCAACTATGGGAGGTTCTTGCTGGTTTGGGTATAATTTGATGTTTAATCAAAAACTAAACTTGGTTGTATGTATTTTGGTCATGCTATGGTGTTATTTATGCTCTGATCTGAAAAGCTTAATATGGGCTTTTCTCAGTTTCTTAAATTCACATATTGTTCAAGTATTA</genome_strand>
        <mrna_strand>GATTTGAAGGACAGATCTCCAGCAAAAACATTGAGATTGGAATTATTGGAACAGACAAAGTATTCAG....................................................................................AATTCTCACTCCAACTGAAATAGATGATTACCTACAGGAAGTAGAATAGATTTTCCTTTCAGCCAAAAAGGAATTGGAAGTAGTTGTTGGACAGGAAGCGCAGCTAGGGGCATAGCACAAGCTCAACTATGGGAGGTTCTTGCTGGTTTGGGTATAATTTGATGTTTAATCAAAAACTAAACTTGGTTGTATGTATTTTGGTCATGCTATGGTGTTATTTATGCTCTGATCTGAAAAGCTTAATATGGGCTTTTCTCAGTTTCTTAAATTCACATATTGTTCAAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E373683" ref_strand="+" ref_description="SGN-E373683 [TUS-33-G2]">
      <seq>gaggaacaagctatttctgcaaatcctctttgctgctgaaactttgcatcttcatcttcaacctctcgatcgttttcaactgaaaattagtccttaaggcaatgggtgatagtcagtattctttctcacttacaactttcagtccatctggaaagctggttcagattgagcatgcattgactgctgttggatctggccaaacatcattgggaattaaagcttctaatggtgttgtaattgctaccgagaagaaattaccatctatcttagttgatgaagcatctgtgcagaaaattcagactttgacatcaaatattggagttgtgtacagtggcatgggtcctgattctcgagttttggttcggaaaagtaggaagtcagctgagcaatattaccgactctataaagaaccaatccctgtcactcaactggtgagggaaactgctgctgtcatgcaggaattcacccaatcaggtggtgtaagaccatttggtgtttcactcttggttgcgggttttgatgacaagggtccacaactatatcaggttgatccatctggttcgtacttctcttggaaggcttcagcaatgggaaagaatgtctctaatgccaagacatttctcgagaagagatacacggaggaaatggagctcgatgatgctgtacacactgctatcctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="103994" stop="98478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103694" g_stop="103624" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103623" i_stop="103115" i_length="509">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103114" g_stop="103044" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="142" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103043" i_stop="102949" i_length="95">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102948" g_stop="102872" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="219" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102871" i_stop="102413" i_length="459">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102412" g_stop="102348" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="284" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102347" i_stop="101664" i_length="684">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101663" g_stop="101617" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="331" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101616" i_stop="101272" i_length="345">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101271" g_stop="101196" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="407" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101195" i_stop="100858" i_length="338">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100857" g_stop="100790" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="475" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100789" i_stop="100093" i_length="697">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100092" g_stop="100023" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="545" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100022" i_stop="99789" i_length="234">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="99788" g_stop="99703" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="631" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="99702" i_stop="98830" i_length="873">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="98829" g_stop="98778" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="683" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E373683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103694" e_stop="103624"/>
          <exon e_start="103114" e_stop="103044"/>
          <exon e_start="102948" e_stop="102872"/>
          <exon e_start="102412" e_stop="102348"/>
          <exon e_start="101663" e_stop="101617"/>
          <exon e_start="101271" e_stop="101196"/>
          <exon e_start="100857" e_stop="100790"/>
          <exon e_start="100092" e_stop="100023"/>
          <exon e_start="99788" e_stop="99703"/>
          <exon e_start="98829" e_stop="98778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAACAAGCTATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATCGTATGTAAAATTTGATCTCTTATGCAATCGTAGATATAAATTGTCACAATGTTTTTTATTTTTCGCTTTAATTTACTTAGGTTTTATGCTTTTTTCCTTACTATTAAAATTATTCCTGTGTTATTTGATGCTTTTTTGGTTACTTTTTTATGTATTGAATAAAGAGATTGTGCACATTTTCTGATTAAATACGTGAATATTTCAATTTTTTGTTATACGAATCAGATATGAGAGAGATTAATCCGGGAGCAGCATACTTCGTTAGATCCCTGCAGCATTGTTAAAATTTAGCGATGAATATTAGTTTTAATGAAGTAGAAAAGAAGTGGAATATTTATTGGTGTTCAGTGAAGTTCTGGATATCGATTTTCGGTCTATTTACCTTTTGGTGAATTAGTTAATCATGGTTTAAAATAGTGAATTTGCAGTTTCAGTAATGATGTTAGTTAAGCTAGTGATTCTACTGTCTGACTTATACTGTTTTTGCTCGGAACGTTATCATTTTACAGGTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAGGTATAGGTTTATGAGATAGAACTTGTATGTATTGGATCAATTATATAGTTTCTACTCAATTTTGATGTCTGATATTGTAATATGCCGTGGCATAGTCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAGGTAACTCAAGGTCTAATTTAAATGCAAAGTTATTGATATGGCAATAGCGTTAACATATGTCTGCGATTATGTTCTATTCAGCATGTTCACTTGCTTTGTATTATAAAAAAGGTTATCGTAGAGAATGCCGAACAAGTTAACTCTGAAATATTTGAAACCGAATCTTGTAACATCGTTTTACTTCTAGTTGTTGATTTAAATGCTTTTGGCTCTGTAACATAGATGACTTGCATCCCCATACTGGGATTTTTAATTTAGTGAAGACTGAAGAATGTAGTTGTGACTTTATAAGCCAATAATACTATAATAGGATACACATGTCCTTCAGGTATTGTGGTGTGATTCTACTTCTCATTTAAGAGTTCCTTCTGGAGAAGTTTCAAGCTTTTGTTTTCCTAGCTCGATTAATAGTTGTGAAGTTCTTGTAGTGATTTTATATATCCAACTGTTTGATTGCAGCTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCTGTAAGTATATCCCGTAAAGTTTATCCTCTGTTGTCTATTTATGATAATGAATGTTCCTTGTATATTATAGTTGCCAGACTGACTGTTGATAGCTAATCAAATATAGTAGTGCTCTTATTTTTCTCTCTAAAGTTGATTCTAGTGATTTATTTTTATACTCTTAACTTTTTGTTGATAAAAATTTCCAATGACTGTGTTGGTGTGAGTAGTAGTTTGCAGTTTAGTAATAAGTTAGGCATAAGAGAAGATATCTTCTTTTTAGTTCAATCTATGAGTACCTGGTCTGATATCCAATTGAGCTTCATCAAGATTGAAACAAATGATGATTTTTTATTAAGTTTAGATAATTAGTCTGTTTGAATTTGCGTATGCATTGAAAATATATAAATTTTAGTAATGTTTACTTTACTGCTCTGTAGAGTTATATTCTAAATTATATTCACAAAAGCAGTTAGCCAGTTACCAGGTTACAACATACCAACAAGTGCATTCATGTTTGTAGTCTTTGGTGTTAAATTCGTATATTCTGTGGTTCGGTGATATTTATTTCTACCTATCACGTCTTGGAACTGCATGGGCATTCCAAGTGCCTTTTTGTTTTTGCTTTACATTCCTTAACCTTTGCCATGTTGCGTCTTCCTTTTAGTTTACCCTTCTACACCTGATTCTTTGAATGTATAACAGGTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAGGTACAATCTGTTATATGATAGAGCACAAAAAATTTCCTATGCCCATGGTGCTTTGTCCATAGTTGAATTGACAAATCGATTGGCGATTTGCCTTGCTTAGCTAGTTGCTATTCATTAGAACTTGAAACTAACAACTTGTTATACGTGGAAGGATGGTACCTATGAAAGCTGATATGGTTCTACTTCTGTTCCAAATTATCTTACAATATCCGTAAAGCATCAATATATGCCTTGCAAATGGTCTTAGTTCTCTGATATATCCTTCCACGGGGTGTTTTTATATGTTCTTGTGGTTACTGCATTACCTCTGGTGATCTCTCTAATACCAAAATTTACTCCTTGCAGTGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAAGTATGAATTAGCTTTCATCAAATCTCAATTCTATGATTCAAGTGCAGTATTTCCTTAATGATTCAAGTGTAATGTTACCACTCTGCCGGGTGATATTTGTACAATTGATATAACTGTCCTACTATTTTGCAATTTAAGATGCTTCTTCTTTGTATTGATGCTAACATATAAAGTTGCTGTCTAATCTTGCTCTTGCTATACGGAGGCAGAGGTTTTCTATTGGAGCTCCCTTTTCCTCTAACCTGCATTGTTTGTTTCACACTAGTGCTTTAATGTGATGTTGCTTTAGCATACTTTATTCCTTCTACATTTGCCTGATTTATCTATGTGGTGCATAGGAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGGGTAAGCACTCTTTTATTCCATACTTCCACTTCACTTGGAGGATCCTATAATATGTGCTGATCATATTTTAAATATCGAGAAACATGGTCAATAAGCATTCGTATTGTCAATCCCAACTTGTTTGGACCTGAGGTCTAGTTTTTGTTGTTGGATACCAATAGTTATCACTGACTAAACAATTCTATTTGTTACTCATTATTCATTAACAATATTTTAAGATTAATAACGTTCCTCTCTTTGCATTGTTATTTCTTACCTAGGTTTAGTAGGTGGATTTTTGAGTTTGGGTTAATTTCTAAAGGAATCGTTGTTGGATTACTGGGGCTGCACAAGCCTCCTTTATATAGGATGGAAGCAATGTGCACTACAGTTGTTGTAGTCATTTCTAATTTTTAGCTACTCTCCGGAAGCATTTCTGGAAGTGGAGGTTAAACTTGGCCTCTAAACTTTTTGGTTCTCTTGGATGTGCTCTCTTTTCATGTTAGAATATGAATTAATTGTTCTGTTGACGAAGATCAACACTTATGATTCATCAGACTATCAACTGTAGGGCAGGCAAAGCCATATCTTTCTTGAAACTAATCCAGATGCTCATCTGTATCTATGTGTGATTTTCTTTTGGATGTTCAAGAAAGAGGTCATTTTTAGTCTTCTTGGGCAATCCCTTACTTTTGTTTTTCTGTTTTCTCCGGTACAGTGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAGGTATGTTGTCTATCAGTGCTGGTGATCTCTCTGGTCACTTTCTGTTCTTGAGGTGTCTAATTTGGTGATCTATACTTCATGAGGTGAATTTACATAATTTGTATTGATTTTCTTCATGGTGTTTCACTTGTGGGAGCTTTTATTCTTTGTAAATTTTGTTTAATGAGCTGCAGCCTGCAGGTTCCTTTGTTGCTTGAACTCTTTTCATGTTCAGCTGTTTTTTTCTCATTTTAGGTTGATCCATCTGGTTCGTACTTCTCTTGGAAGGCTTCAGCAATGGGAAAGAATGTCTCTAATGCCAAGACATTTCTCGAGAAGAGGTGAATCCTTATTCATTTAAAAAAAGTTGATCGTTTATTCATAAAAATATTTAACCTCCTTTTTCTTCTTTTTAAATGCTATATTTTTACATTTACTGGTCTACAATCGAAGTTACTGTCTGATTTTATGTAACAATTACCAGTTTTAGAAAACTCATCTTAACCAGCTACCTCATGAGTTTGTAGCCCTAATAGTTTTGGTTAAACAAGAACAATAATCTCTCCTCAATAACCCACAGCTGTCTAATTCTTCATCCATTGATGGACTGTCTTGATCTTTTACTGTGCACCATCTTTATATCAACCTGCTACTGCTTCTTGCACTTCCTCTACTTTTACCAAAAGTTGCAAAAAGTAGTTGGAACAGCTTTTATGCAAGGGAGACATTGTTCACTTTGTGAGTGTGTCAATGATTTGCATCTGTTCTATTCTATTACTCTGGATGTGCTAAGGGTTATTACGCGAACCGAGTTGTAATTTATTAGCCTCATGGCATCAGAAGATGGGAGGGGGTGAAAAGGGAGGAAATCTATAAAGGTATGGGTTTTATTGCATTTCTACAAATGTGCTAGGAAGAGAATTGTTGGTAATGTACAATTGATTTGCTTGAAACAAGTAGCCAGCAGAGGGCTTCTGCCCATACTGCTTTGTGACATCAGTTGGTGCTGGCGATTGGAGTTGTAGGTCAAACTTTGACATACCTTTGAAGGATGTTAACCATTTTTCTGTCCCACAATGTCAAATGTTGTCTGCATGTTGGAACATTGTCTCATTGGCCAACTACCAAGCCTATTAATTTGGGGTGCTTTTCAACCCGTTTGATTACTGGTGAAGTATTATTAAAGTAAAACATAACGTTCCTGTTCCACTCAGATACACGGAGGAAATGGAGCTCGATGATGCTGTACACACTGCTATCCTGACA</genome_strand>
        <mrna_strand>GAGGAACAAGCTATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAG...............................................................................................TCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAG.........................................................................................................................................................................................................................................................................................................................................................TGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAA..................................................................................................................................................................................................................................................................................................................................................GAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAG..........................................................................................................................................................................................................................................GTTGATCCATCTGGTTCGTACTTCTCTTGGAAGGCTTCAGCAATGGGAAAGAATGTCTCTAATGCCAAGACATTTCTCGAGAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACGGAGGAAATGGAGCTCGATGATGCTGTACACACTGCTATCCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E266004" ref_strand="+" ref_description="SGN-E266004 [cLEI-6-D22]">
      <seq>ctgtgcaaaaaattcaaactttgacatcaaatattggagttgagtacagtggcatggcttctgattttagagttatggttcggaaaagtaagaagccagctgagcaatattaccgactctataaagaaccaatccctgtcactcaactggtgagggaaactgctgctgtcatgcaagaattcacccaatcaggtggtgtaagaccatttggtgtttcactcttggttgcgggttttgatgacaagggctcacaactatatcaggttgatccatttggttcgtactactcttggaaggcttcatcaatgggaaagaatgtctctaatgccaagacatttttcgagaagagatacacggtggaaatggagctcgatgatgctgtacacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="101963" stop="98490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101663" g_stop="101617" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="49" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101616" i_stop="101272" i_length="345">
            <donor d_prob="0.587" d_score="0.94"/>
            <acceptor a_prob="0.966" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101271" g_stop="101196" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="125" r_length="76" r_score="0.908"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101195" i_stop="100858" i_length="338">
            <donor d_prob="0.911" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100857" g_stop="100790" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="193" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100789" i_stop="100093" i_length="697">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100092" g_stop="100023" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="263" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100022" i_stop="99789" i_length="234">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99788" g_stop="99703" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="349" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99702" i_stop="98830" i_length="873">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98829" g_stop="98790" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="389" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E266004" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101663" e_stop="101617"/>
          <exon e_start="101271" e_stop="101196"/>
          <exon e_start="100857" e_stop="100790"/>
          <exon e_start="100092" e_stop="100023"/>
          <exon e_start="99788" e_stop="99703"/>
          <exon e_start="98829" e_stop="98790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAGGTACAATCTGTTATATGATAGAGCACAAAAAATTTCCTATGCCCATGGTGCTTTGTCCATAGTTGAATTGACAAATCGATTGGCGATTTGCCTTGCTTAGCTAGTTGCTATTCATTAGAACTTGAAACTAACAACTTGTTATACGTGGAAGGATGGTACCTATGAAAGCTGATATGGTTCTACTTCTGTTCCAAATTATCTTACAATATCCGTAAAGCATCAATATATGCCTTGCAAATGGTCTTAGTTCTCTGATATATCCTTCCACGGGGTGTTTTTATATGTTCTTGTGGTTACTGCATTACCTCTGGTGATCTCTCTAATACCAAAATTTACTCCTTGCAGTGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAAGTATGAATTAGCTTTCATCAAATCTCAATTCTATGATTCAAGTGCAGTATTTCCTTAATGATTCAAGTGTAATGTTACCACTCTGCCGGGTGATATTTGTACAATTGATATAACTGTCCTACTATTTTGCAATTTAAGATGCTTCTTCTTTGTATTGATGCTAACATATAAAGTTGCTGTCTAATCTTGCTCTTGCTATACGGAGGCAGAGGTTTTCTATTGGAGCTCCCTTTTCCTCTAACCTGCATTGTTTGTTTCACACTAGTGCTTTAATGTGATGTTGCTTTAGCATACTTTATTCCTTCTACATTTGCCTGATTTATCTATGTGGTGCATAGGAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGGGTAAGCACTCTTTTATTCCATACTTCCACTTCACTTGGAGGATCCTATAATATGTGCTGATCATATTTTAAATATCGAGAAACATGGTCAATAAGCATTCGTATTGTCAATCCCAACTTGTTTGGACCTGAGGTCTAGTTTTTGTTGTTGGATACCAATAGTTATCACTGACTAAACAATTCTATTTGTTACTCATTATTCATTAACAATATTTTAAGATTAATAACGTTCCTCTCTTTGCATTGTTATTTCTTACCTAGGTTTAGTAGGTGGATTTTTGAGTTTGGGTTAATTTCTAAAGGAATCGTTGTTGGATTACTGGGGCTGCACAAGCCTCCTTTATATAGGATGGAAGCAATGTGCACTACAGTTGTTGTAGTCATTTCTAATTTTTAGCTACTCTCCGGAAGCATTTCTGGAAGTGGAGGTTAAACTTGGCCTCTAAACTTTTTGGTTCTCTTGGATGTGCTCTCTTTTCATGTTAGAATATGAATTAATTGTTCTGTTGACGAAGATCAACACTTATGATTCATCAGACTATCAACTGTAGGGCAGGCAAAGCCATATCTTTCTTGAAACTAATCCAGATGCTCATCTGTATCTATGTGTGATTTTCTTTTGGATGTTCAAGAAAGAGGTCATTTTTAGTCTTCTTGGGCAATCCCTTACTTTTGTTTTTCTGTTTTCTCCGGTACAGTGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAGGTATGTTGTCTATCAGTGCTGGTGATCTCTCTGGTCACTTTCTGTTCTTGAGGTGTCTAATTTGGTGATCTATACTTCATGAGGTGAATTTACATAATTTGTATTGATTTTCTTCATGGTGTTTCACTTGTGGGAGCTTTTATTCTTTGTAAATTTTGTTTAATGAGCTGCAGCCTGCAGGTTCCTTTGTTGCTTGAACTCTTTTCATGTTCAGCTGTTTTTTTCTCATTTTAGGTTGATCCATCTGGTTCGTACTTCTCTTGGAAGGCTTCAGCAATGGGAAAGAATGTCTCTAATGCCAAGACATTTCTCGAGAAGAGGTGAATCCTTATTCATTTAAAAAAAGTTGATCGTTTATTCATAAAAATATTTAACCTCCTTTTTCTTCTTTTTAAATGCTATATTTTTACATTTACTGGTCTACAATCGAAGTTACTGTCTGATTTTATGTAACAATTACCAGTTTTAGAAAACTCATCTTAACCAGCTACCTCATGAGTTTGTAGCCCTAATAGTTTTGGTTAAACAAGAACAATAATCTCTCCTCAATAACCCACAGCTGTCTAATTCTTCATCCATTGATGGACTGTCTTGATCTTTTACTGTGCACCATCTTTATATCAACCTGCTACTGCTTCTTGCACTTCCTCTACTTTTACCAAAAGTTGCAAAAAGTAGTTGGAACAGCTTTTATGCAAGGGAGACATTGTTCACTTTGTGAGTGTGTCAATGATTTGCATCTGTTCTATTCTATTACTCTGGATGTGCTAAGGGTTATTACGCGAACCGAGTTGTAATTTATTAGCCTCATGGCATCAGAAGATGGGAGGGGGTGAAAAGGGAGGAAATCTATAAAGGTATGGGTTTTATTGCATTTCTACAAATGTGCTAGGAAGAGAATTGTTGGTAATGTACAATTGATTTGCTTGAAACAAGTAGCCAGCAGAGGGCTTCTGCCCATACTGCTTTGTGACATCAGTTGGTGCTGGCGATTGGAGTTGTAGGTCAAACTTTGACATACCTTTGAAGGATGTTAACCATTTTTCTGTCCCACAATGTCAAATGTTGTCTGCATGTTGGAACATTGTCTCATTGGCCAACTACCAAGCCTATTAATTTGGGGTGCTTTTCAACCCGTTTGATTACTGGTGAAGTATTATTAAAGTAAAACATAACGTTCCTGTTCCACTCAGATACACGGAGGAAATGGAGCTCGATGATGCTGTACACACT</genome_strand>
        <mrna_strand>GTGCAAAAAATTCAAACTTTGACATCAAATATTGGAGTTGAGTACAG.........................................................................................................................................................................................................................................................................................................................................................TGGCATGGCTTCTGATTTTAGAGTTATGGTTCGGAAAAGTAAGAAGCCAGCTGAGCAATATTACCGACTCTATAAA..................................................................................................................................................................................................................................................................................................................................................GAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAAGAATTCACCCAATCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGCTCACAACTATATCAG..........................................................................................................................................................................................................................................GTTGATCCATTTGGTTCGTACTACTCTTGGAAGGCTTCATCAATGGGAAAGAATGTCTCTAATGCCAAGACATTTTTCGAGAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACGGTGGAAATGGAGCTCGATGATGCTGTACACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E275189" ref_strand="+" ref_description="SGN-E275189 [cLEN-9-N8]">
      <seq>atttctgcaaatcctctttgctgctgaaactttgcatcttcatcttcaacctctcgatcgttttcaactgaaaattagtccttaaggcaatgggtgatagtcagtattctttctcacttacaactttcagtccatctggaaagctggttcagattgagcatgcattgactgctgttggatctggccaaacatcattgggaattaaagcttctaatggtgttgtaattgctaccgagaagaaattaccatctatcttagttgatgaagcatctgtgcagaaaattcagactttgacatcaaatattggagttgtgtacagtggcatgggtcctgattctcgagttttggttcggaaaagtaggaagtcagctgagcaatattaccgactctataaagaaccaatccctgtcactcaactggtgagggaaactgctgctgtcatgcaggaattcacccaatcaggtggtgtaagaccatttggtgtttcactcttggttgcgggttttgatgacaagggtccacaactatatcaggttgatccatctggttcgtacttctcttggaaggcttcagcaatgggaaagaatgtctctaatgccaagacatttctcgagaagagatacacggaggaaatggagctcgatgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="103982" stop="98499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103682" g_stop="103624" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103623" i_stop="103115" i_length="509">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103114" g_stop="103044" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="130" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103043" i_stop="102949" i_length="95">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102948" g_stop="102872" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="207" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102871" i_stop="102413" i_length="459">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102412" g_stop="102348" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="272" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102347" i_stop="101664" i_length="684">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101663" g_stop="101617" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="319" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101616" i_stop="101272" i_length="345">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101271" g_stop="101196" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="395" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101195" i_stop="100858" i_length="338">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100857" g_stop="100790" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="463" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100789" i_stop="100093" i_length="697">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100092" g_stop="100023" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="533" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100022" i_stop="99789" i_length="234">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="99788" g_stop="99703" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="619" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="99702" i_stop="98830" i_length="873">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="98829" g_stop="98799" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="650" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E275189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103682" e_stop="103624"/>
          <exon e_start="103114" e_stop="103044"/>
          <exon e_start="102948" e_stop="102872"/>
          <exon e_start="102412" e_stop="102348"/>
          <exon e_start="101663" e_stop="101617"/>
          <exon e_start="101271" e_stop="101196"/>
          <exon e_start="100857" e_stop="100790"/>
          <exon e_start="100092" e_stop="100023"/>
          <exon e_start="99788" e_stop="99703"/>
          <exon e_start="98829" e_stop="98799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATCGTATGTAAAATTTGATCTCTTATGCAATCGTAGATATAAATTGTCACAATGTTTTTTATTTTTCGCTTTAATTTACTTAGGTTTTATGCTTTTTTCCTTACTATTAAAATTATTCCTGTGTTATTTGATGCTTTTTTGGTTACTTTTTTATGTATTGAATAAAGAGATTGTGCACATTTTCTGATTAAATACGTGAATATTTCAATTTTTTGTTATACGAATCAGATATGAGAGAGATTAATCCGGGAGCAGCATACTTCGTTAGATCCCTGCAGCATTGTTAAAATTTAGCGATGAATATTAGTTTTAATGAAGTAGAAAAGAAGTGGAATATTTATTGGTGTTCAGTGAAGTTCTGGATATCGATTTTCGGTCTATTTACCTTTTGGTGAATTAGTTAATCATGGTTTAAAATAGTGAATTTGCAGTTTCAGTAATGATGTTAGTTAAGCTAGTGATTCTACTGTCTGACTTATACTGTTTTTGCTCGGAACGTTATCATTTTACAGGTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAGGTATAGGTTTATGAGATAGAACTTGTATGTATTGGATCAATTATATAGTTTCTACTCAATTTTGATGTCTGATATTGTAATATGCCGTGGCATAGTCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAGGTAACTCAAGGTCTAATTTAAATGCAAAGTTATTGATATGGCAATAGCGTTAACATATGTCTGCGATTATGTTCTATTCAGCATGTTCACTTGCTTTGTATTATAAAAAAGGTTATCGTAGAGAATGCCGAACAAGTTAACTCTGAAATATTTGAAACCGAATCTTGTAACATCGTTTTACTTCTAGTTGTTGATTTAAATGCTTTTGGCTCTGTAACATAGATGACTTGCATCCCCATACTGGGATTTTTAATTTAGTGAAGACTGAAGAATGTAGTTGTGACTTTATAAGCCAATAATACTATAATAGGATACACATGTCCTTCAGGTATTGTGGTGTGATTCTACTTCTCATTTAAGAGTTCCTTCTGGAGAAGTTTCAAGCTTTTGTTTTCCTAGCTCGATTAATAGTTGTGAAGTTCTTGTAGTGATTTTATATATCCAACTGTTTGATTGCAGCTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCTGTAAGTATATCCCGTAAAGTTTATCCTCTGTTGTCTATTTATGATAATGAATGTTCCTTGTATATTATAGTTGCCAGACTGACTGTTGATAGCTAATCAAATATAGTAGTGCTCTTATTTTTCTCTCTAAAGTTGATTCTAGTGATTTATTTTTATACTCTTAACTTTTTGTTGATAAAAATTTCCAATGACTGTGTTGGTGTGAGTAGTAGTTTGCAGTTTAGTAATAAGTTAGGCATAAGAGAAGATATCTTCTTTTTAGTTCAATCTATGAGTACCTGGTCTGATATCCAATTGAGCTTCATCAAGATTGAAACAAATGATGATTTTTTATTAAGTTTAGATAATTAGTCTGTTTGAATTTGCGTATGCATTGAAAATATATAAATTTTAGTAATGTTTACTTTACTGCTCTGTAGAGTTATATTCTAAATTATATTCACAAAAGCAGTTAGCCAGTTACCAGGTTACAACATACCAACAAGTGCATTCATGTTTGTAGTCTTTGGTGTTAAATTCGTATATTCTGTGGTTCGGTGATATTTATTTCTACCTATCACGTCTTGGAACTGCATGGGCATTCCAAGTGCCTTTTTGTTTTTGCTTTACATTCCTTAACCTTTGCCATGTTGCGTCTTCCTTTTAGTTTACCCTTCTACACCTGATTCTTTGAATGTATAACAGGTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAGGTACAATCTGTTATATGATAGAGCACAAAAAATTTCCTATGCCCATGGTGCTTTGTCCATAGTTGAATTGACAAATCGATTGGCGATTTGCCTTGCTTAGCTAGTTGCTATTCATTAGAACTTGAAACTAACAACTTGTTATACGTGGAAGGATGGTACCTATGAAAGCTGATATGGTTCTACTTCTGTTCCAAATTATCTTACAATATCCGTAAAGCATCAATATATGCCTTGCAAATGGTCTTAGTTCTCTGATATATCCTTCCACGGGGTGTTTTTATATGTTCTTGTGGTTACTGCATTACCTCTGGTGATCTCTCTAATACCAAAATTTACTCCTTGCAGTGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAAGTATGAATTAGCTTTCATCAAATCTCAATTCTATGATTCAAGTGCAGTATTTCCTTAATGATTCAAGTGTAATGTTACCACTCTGCCGGGTGATATTTGTACAATTGATATAACTGTCCTACTATTTTGCAATTTAAGATGCTTCTTCTTTGTATTGATGCTAACATATAAAGTTGCTGTCTAATCTTGCTCTTGCTATACGGAGGCAGAGGTTTTCTATTGGAGCTCCCTTTTCCTCTAACCTGCATTGTTTGTTTCACACTAGTGCTTTAATGTGATGTTGCTTTAGCATACTTTATTCCTTCTACATTTGCCTGATTTATCTATGTGGTGCATAGGAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGGGTAAGCACTCTTTTATTCCATACTTCCACTTCACTTGGAGGATCCTATAATATGTGCTGATCATATTTTAAATATCGAGAAACATGGTCAATAAGCATTCGTATTGTCAATCCCAACTTGTTTGGACCTGAGGTCTAGTTTTTGTTGTTGGATACCAATAGTTATCACTGACTAAACAATTCTATTTGTTACTCATTATTCATTAACAATATTTTAAGATTAATAACGTTCCTCTCTTTGCATTGTTATTTCTTACCTAGGTTTAGTAGGTGGATTTTTGAGTTTGGGTTAATTTCTAAAGGAATCGTTGTTGGATTACTGGGGCTGCACAAGCCTCCTTTATATAGGATGGAAGCAATGTGCACTACAGTTGTTGTAGTCATTTCTAATTTTTAGCTACTCTCCGGAAGCATTTCTGGAAGTGGAGGTTAAACTTGGCCTCTAAACTTTTTGGTTCTCTTGGATGTGCTCTCTTTTCATGTTAGAATATGAATTAATTGTTCTGTTGACGAAGATCAACACTTATGATTCATCAGACTATCAACTGTAGGGCAGGCAAAGCCATATCTTTCTTGAAACTAATCCAGATGCTCATCTGTATCTATGTGTGATTTTCTTTTGGATGTTCAAGAAAGAGGTCATTTTTAGTCTTCTTGGGCAATCCCTTACTTTTGTTTTTCTGTTTTCTCCGGTACAGTGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAGGTATGTTGTCTATCAGTGCTGGTGATCTCTCTGGTCACTTTCTGTTCTTGAGGTGTCTAATTTGGTGATCTATACTTCATGAGGTGAATTTACATAATTTGTATTGATTTTCTTCATGGTGTTTCACTTGTGGGAGCTTTTATTCTTTGTAAATTTTGTTTAATGAGCTGCAGCCTGCAGGTTCCTTTGTTGCTTGAACTCTTTTCATGTTCAGCTGTTTTTTTCTCATTTTAGGTTGATCCATCTGGTTCGTACTTCTCTTGGAAGGCTTCAGCAATGGGAAAGAATGTCTCTAATGCCAAGACATTTCTCGAGAAGAGGTGAATCCTTATTCATTTAAAAAAAGTTGATCGTTTATTCATAAAAATATTTAACCTCCTTTTTCTTCTTTTTAAATGCTATATTTTTACATTTACTGGTCTACAATCGAAGTTACTGTCTGATTTTATGTAACAATTACCAGTTTTAGAAAACTCATCTTAACCAGCTACCTCATGAGTTTGTAGCCCTAATAGTTTTGGTTAAACAAGAACAATAATCTCTCCTCAATAACCCACAGCTGTCTAATTCTTCATCCATTGATGGACTGTCTTGATCTTTTACTGTGCACCATCTTTATATCAACCTGCTACTGCTTCTTGCACTTCCTCTACTTTTACCAAAAGTTGCAAAAAGTAGTTGGAACAGCTTTTATGCAAGGGAGACATTGTTCACTTTGTGAGTGTGTCAATGATTTGCATCTGTTCTATTCTATTACTCTGGATGTGCTAAGGGTTATTACGCGAACCGAGTTGTAATTTATTAGCCTCATGGCATCAGAAGATGGGAGGGGGTGAAAAGGGAGGAAATCTATAAAGGTATGGGTTTTATTGCATTTCTACAAATGTGCTAGGAAGAGAATTGTTGGTAATGTACAATTGATTTGCTTGAAACAAGTAGCCAGCAGAGGGCTTCTGCCCATACTGCTTTGTGACATCAGTTGGTGCTGGCGATTGGAGTTGTAGGTCAAACTTTGACATACCTTTGAAGGATGTTAACCATTTTTCTGTCCCACAATGTCAAATGTTGTCTGCATGTTGGAACATTGTCTCATTGGCCAACTACCAAGCCTATTAATTTGGGGTGCTTTTCAACCCGTTTGATTACTGGTGAAGTATTATTAAAGTAAAACATAACGTTCCTGTTCCACTCAGATACACGGAGGAAATGGAGCTCGATGATGCT</genome_strand>
        <mrna_strand>ATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAG...............................................................................................TCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAG.........................................................................................................................................................................................................................................................................................................................................................TGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAA..................................................................................................................................................................................................................................................................................................................................................GAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAG..........................................................................................................................................................................................................................................GTTGATCCATCTGGTTCGTACTTCTCTTGGAAGGCTTCAGCAATGGGAAAGAATGTCTCTAATGCCAAGACATTTCTCGAGAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACGGAGGAAATGGAGCTCGATGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E288246" ref_strand="+" ref_description="SGN-E288246 [cLES-16-I15]">
      <seq>cctctcgatcgttttcaactgaaaattagtccttaaggcaatgggtgatagtcagtattctttctcacttacaactttcagtccatctggaaagctggttcagattgagcatgcattgactgctgttggatctggccaaacatcattgggaattaaagcttctaatggtgttgtaattgctaccgagaagaaattaccatctatcttagttgatgaagcatctgtgcagaaaattcagactttgacatcaaatattggagttgtgtacagtggcatgggtcctgattctcgagttttggttcggaaaagtaggaagtcagctgagcaatattaccgactctataaagaaccaatccctgtcactcaactggtgagggaaactgctgctgtcatgcaggaattcacccaatcaggtggtgtaagaccatttggtgtttcactcttggttgcgggttttgatgacaagggtccacaactatatcaggttgatccatctggttcgtacttctcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="103414" stop="99458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103114" g_stop="103044" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="81" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103043" i_stop="102949" i_length="95">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102948" g_stop="102872" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="158" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102871" i_stop="102413" i_length="459">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102412" g_stop="102348" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="223" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102347" i_stop="101664" i_length="684">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101663" g_stop="101617" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="270" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101616" i_stop="101272" i_length="345">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101271" g_stop="101196" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="346" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101195" i_stop="100858" i_length="338">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100857" g_stop="100790" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="414" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100789" i_stop="100093" i_length="697">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100092" g_stop="100023" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="484" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100022" i_stop="99789" i_length="234">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99788" g_stop="99758" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="515" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E288246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103114" e_stop="103044"/>
          <exon e_start="102948" e_stop="102872"/>
          <exon e_start="102412" e_stop="102348"/>
          <exon e_start="101663" e_stop="101617"/>
          <exon e_start="101271" e_stop="101196"/>
          <exon e_start="100857" e_stop="100790"/>
          <exon e_start="100092" e_stop="100023"/>
          <exon e_start="99788" e_stop="99758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAGGTATAGGTTTATGAGATAGAACTTGTATGTATTGGATCAATTATATAGTTTCTACTCAATTTTGATGTCTGATATTGTAATATGCCGTGGCATAGTCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAGGTAACTCAAGGTCTAATTTAAATGCAAAGTTATTGATATGGCAATAGCGTTAACATATGTCTGCGATTATGTTCTATTCAGCATGTTCACTTGCTTTGTATTATAAAAAAGGTTATCGTAGAGAATGCCGAACAAGTTAACTCTGAAATATTTGAAACCGAATCTTGTAACATCGTTTTACTTCTAGTTGTTGATTTAAATGCTTTTGGCTCTGTAACATAGATGACTTGCATCCCCATACTGGGATTTTTAATTTAGTGAAGACTGAAGAATGTAGTTGTGACTTTATAAGCCAATAATACTATAATAGGATACACATGTCCTTCAGGTATTGTGGTGTGATTCTACTTCTCATTTAAGAGTTCCTTCTGGAGAAGTTTCAAGCTTTTGTTTTCCTAGCTCGATTAATAGTTGTGAAGTTCTTGTAGTGATTTTATATATCCAACTGTTTGATTGCAGCTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCTGTAAGTATATCCCGTAAAGTTTATCCTCTGTTGTCTATTTATGATAATGAATGTTCCTTGTATATTATAGTTGCCAGACTGACTGTTGATAGCTAATCAAATATAGTAGTGCTCTTATTTTTCTCTCTAAAGTTGATTCTAGTGATTTATTTTTATACTCTTAACTTTTTGTTGATAAAAATTTCCAATGACTGTGTTGGTGTGAGTAGTAGTTTGCAGTTTAGTAATAAGTTAGGCATAAGAGAAGATATCTTCTTTTTAGTTCAATCTATGAGTACCTGGTCTGATATCCAATTGAGCTTCATCAAGATTGAAACAAATGATGATTTTTTATTAAGTTTAGATAATTAGTCTGTTTGAATTTGCGTATGCATTGAAAATATATAAATTTTAGTAATGTTTACTTTACTGCTCTGTAGAGTTATATTCTAAATTATATTCACAAAAGCAGTTAGCCAGTTACCAGGTTACAACATACCAACAAGTGCATTCATGTTTGTAGTCTTTGGTGTTAAATTCGTATATTCTGTGGTTCGGTGATATTTATTTCTACCTATCACGTCTTGGAACTGCATGGGCATTCCAAGTGCCTTTTTGTTTTTGCTTTACATTCCTTAACCTTTGCCATGTTGCGTCTTCCTTTTAGTTTACCCTTCTACACCTGATTCTTTGAATGTATAACAGGTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAGGTACAATCTGTTATATGATAGAGCACAAAAAATTTCCTATGCCCATGGTGCTTTGTCCATAGTTGAATTGACAAATCGATTGGCGATTTGCCTTGCTTAGCTAGTTGCTATTCATTAGAACTTGAAACTAACAACTTGTTATACGTGGAAGGATGGTACCTATGAAAGCTGATATGGTTCTACTTCTGTTCCAAATTATCTTACAATATCCGTAAAGCATCAATATATGCCTTGCAAATGGTCTTAGTTCTCTGATATATCCTTCCACGGGGTGTTTTTATATGTTCTTGTGGTTACTGCATTACCTCTGGTGATCTCTCTAATACCAAAATTTACTCCTTGCAGTGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAAGTATGAATTAGCTTTCATCAAATCTCAATTCTATGATTCAAGTGCAGTATTTCCTTAATGATTCAAGTGTAATGTTACCACTCTGCCGGGTGATATTTGTACAATTGATATAACTGTCCTACTATTTTGCAATTTAAGATGCTTCTTCTTTGTATTGATGCTAACATATAAAGTTGCTGTCTAATCTTGCTCTTGCTATACGGAGGCAGAGGTTTTCTATTGGAGCTCCCTTTTCCTCTAACCTGCATTGTTTGTTTCACACTAGTGCTTTAATGTGATGTTGCTTTAGCATACTTTATTCCTTCTACATTTGCCTGATTTATCTATGTGGTGCATAGGAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGGGTAAGCACTCTTTTATTCCATACTTCCACTTCACTTGGAGGATCCTATAATATGTGCTGATCATATTTTAAATATCGAGAAACATGGTCAATAAGCATTCGTATTGTCAATCCCAACTTGTTTGGACCTGAGGTCTAGTTTTTGTTGTTGGATACCAATAGTTATCACTGACTAAACAATTCTATTTGTTACTCATTATTCATTAACAATATTTTAAGATTAATAACGTTCCTCTCTTTGCATTGTTATTTCTTACCTAGGTTTAGTAGGTGGATTTTTGAGTTTGGGTTAATTTCTAAAGGAATCGTTGTTGGATTACTGGGGCTGCACAAGCCTCCTTTATATAGGATGGAAGCAATGTGCACTACAGTTGTTGTAGTCATTTCTAATTTTTAGCTACTCTCCGGAAGCATTTCTGGAAGTGGAGGTTAAACTTGGCCTCTAAACTTTTTGGTTCTCTTGGATGTGCTCTCTTTTCATGTTAGAATATGAATTAATTGTTCTGTTGACGAAGATCAACACTTATGATTCATCAGACTATCAACTGTAGGGCAGGCAAAGCCATATCTTTCTTGAAACTAATCCAGATGCTCATCTGTATCTATGTGTGATTTTCTTTTGGATGTTCAAGAAAGAGGTCATTTTTAGTCTTCTTGGGCAATCCCTTACTTTTGTTTTTCTGTTTTCTCCGGTACAGTGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAGGTATGTTGTCTATCAGTGCTGGTGATCTCTCTGGTCACTTTCTGTTCTTGAGGTGTCTAATTTGGTGATCTATACTTCATGAGGTGAATTTACATAATTTGTATTGATTTTCTTCATGGTGTTTCACTTGTGGGAGCTTTTATTCTTTGTAAATTTTGTTTAATGAGCTGCAGCCTGCAGGTTCCTTTGTTGCTTGAACTCTTTTCATGTTCAGCTGTTTTTTTCTCATTTTAGGTTGATCCATCTGGTTCGTACTTCTCTTGGA</genome_strand>
        <mrna_strand>GTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAG...............................................................................................TCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAG.........................................................................................................................................................................................................................................................................................................................................................TGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAA..................................................................................................................................................................................................................................................................................................................................................GAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAG..........................................................................................................................................................................................................................................GTTGATCCATCTGGTTCGTACTTCTCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E300606" ref_strand="+" ref_description="SGN-E300606 [cLET-45-O24]">
      <seq>gaggaacaagctatttctgcaaatcctctttgctgctgaaactttgcatcttcatcttcaacctctcgatcgttttcaactgaaaattagtccttaaggcaatgggtgatagtcagtattctttctcacttacaactttcagtccatctggaaagctggttcagattgagcatgcattgactgctgttggatctggccaaacatcattgggaattaaagcttctaatggtgttgtaattgctaccgagaagaaattaccatctatcttagttgatgaagcatctgtgcagaaaattcagactttgacatcaaatattggagttgtgtacagtggcatgggtcctgattctcgagttttggttcggaaaagtaagaagtcagctgagcaatattaccgactctataaagaaccaatccctgtcactcaactggtgagggaaactgctgctgtcatgcatgaattcacccaatcaggtggtgtaagaccatttggtgtttcactcttggttgcgggttttgatgacaagggtccacaactatatcacgttgatccatctggttcgtacttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="103994" stop="99463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103694" g_stop="103624" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103623" i_stop="103115" i_length="509">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103114" g_stop="103044" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="142" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103043" i_stop="102949" i_length="95">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102948" g_stop="102872" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="219" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102871" i_stop="102413" i_length="459">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102412" g_stop="102348" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="284" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102347" i_stop="101664" i_length="684">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101663" g_stop="101617" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="331" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101616" i_stop="101272" i_length="345">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101271" g_stop="101196" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="407" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101195" i_stop="100858" i_length="338">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100857" g_stop="100790" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="475" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100789" i_stop="100093" i_length="697">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100092" g_stop="100023" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="545" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100022" i_stop="99789" i_length="234">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="99788" g_stop="99763" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="571" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E300606" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103694" e_stop="103624"/>
          <exon e_start="103114" e_stop="103044"/>
          <exon e_start="102948" e_stop="102872"/>
          <exon e_start="102412" e_stop="102348"/>
          <exon e_start="101663" e_stop="101617"/>
          <exon e_start="101271" e_stop="101196"/>
          <exon e_start="100857" e_stop="100790"/>
          <exon e_start="100092" e_stop="100023"/>
          <exon e_start="99788" e_stop="99763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAACAAGCTATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATCGTATGTAAAATTTGATCTCTTATGCAATCGTAGATATAAATTGTCACAATGTTTTTTATTTTTCGCTTTAATTTACTTAGGTTTTATGCTTTTTTCCTTACTATTAAAATTATTCCTGTGTTATTTGATGCTTTTTTGGTTACTTTTTTATGTATTGAATAAAGAGATTGTGCACATTTTCTGATTAAATACGTGAATATTTCAATTTTTTGTTATACGAATCAGATATGAGAGAGATTAATCCGGGAGCAGCATACTTCGTTAGATCCCTGCAGCATTGTTAAAATTTAGCGATGAATATTAGTTTTAATGAAGTAGAAAAGAAGTGGAATATTTATTGGTGTTCAGTGAAGTTCTGGATATCGATTTTCGGTCTATTTACCTTTTGGTGAATTAGTTAATCATGGTTTAAAATAGTGAATTTGCAGTTTCAGTAATGATGTTAGTTAAGCTAGTGATTCTACTGTCTGACTTATACTGTTTTTGCTCGGAACGTTATCATTTTACAGGTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAGGTATAGGTTTATGAGATAGAACTTGTATGTATTGGATCAATTATATAGTTTCTACTCAATTTTGATGTCTGATATTGTAATATGCCGTGGCATAGTCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAGGTAACTCAAGGTCTAATTTAAATGCAAAGTTATTGATATGGCAATAGCGTTAACATATGTCTGCGATTATGTTCTATTCAGCATGTTCACTTGCTTTGTATTATAAAAAAGGTTATCGTAGAGAATGCCGAACAAGTTAACTCTGAAATATTTGAAACCGAATCTTGTAACATCGTTTTACTTCTAGTTGTTGATTTAAATGCTTTTGGCTCTGTAACATAGATGACTTGCATCCCCATACTGGGATTTTTAATTTAGTGAAGACTGAAGAATGTAGTTGTGACTTTATAAGCCAATAATACTATAATAGGATACACATGTCCTTCAGGTATTGTGGTGTGATTCTACTTCTCATTTAAGAGTTCCTTCTGGAGAAGTTTCAAGCTTTTGTTTTCCTAGCTCGATTAATAGTTGTGAAGTTCTTGTAGTGATTTTATATATCCAACTGTTTGATTGCAGCTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCTGTAAGTATATCCCGTAAAGTTTATCCTCTGTTGTCTATTTATGATAATGAATGTTCCTTGTATATTATAGTTGCCAGACTGACTGTTGATAGCTAATCAAATATAGTAGTGCTCTTATTTTTCTCTCTAAAGTTGATTCTAGTGATTTATTTTTATACTCTTAACTTTTTGTTGATAAAAATTTCCAATGACTGTGTTGGTGTGAGTAGTAGTTTGCAGTTTAGTAATAAGTTAGGCATAAGAGAAGATATCTTCTTTTTAGTTCAATCTATGAGTACCTGGTCTGATATCCAATTGAGCTTCATCAAGATTGAAACAAATGATGATTTTTTATTAAGTTTAGATAATTAGTCTGTTTGAATTTGCGTATGCATTGAAAATATATAAATTTTAGTAATGTTTACTTTACTGCTCTGTAGAGTTATATTCTAAATTATATTCACAAAAGCAGTTAGCCAGTTACCAGGTTACAACATACCAACAAGTGCATTCATGTTTGTAGTCTTTGGTGTTAAATTCGTATATTCTGTGGTTCGGTGATATTTATTTCTACCTATCACGTCTTGGAACTGCATGGGCATTCCAAGTGCCTTTTTGTTTTTGCTTTACATTCCTTAACCTTTGCCATGTTGCGTCTTCCTTTTAGTTTACCCTTCTACACCTGATTCTTTGAATGTATAACAGGTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAGGTACAATCTGTTATATGATAGAGCACAAAAAATTTCCTATGCCCATGGTGCTTTGTCCATAGTTGAATTGACAAATCGATTGGCGATTTGCCTTGCTTAGCTAGTTGCTATTCATTAGAACTTGAAACTAACAACTTGTTATACGTGGAAGGATGGTACCTATGAAAGCTGATATGGTTCTACTTCTGTTCCAAATTATCTTACAATATCCGTAAAGCATCAATATATGCCTTGCAAATGGTCTTAGTTCTCTGATATATCCTTCCACGGGGTGTTTTTATATGTTCTTGTGGTTACTGCATTACCTCTGGTGATCTCTCTAATACCAAAATTTACTCCTTGCAGTGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAAGTATGAATTAGCTTTCATCAAATCTCAATTCTATGATTCAAGTGCAGTATTTCCTTAATGATTCAAGTGTAATGTTACCACTCTGCCGGGTGATATTTGTACAATTGATATAACTGTCCTACTATTTTGCAATTTAAGATGCTTCTTCTTTGTATTGATGCTAACATATAAAGTTGCTGTCTAATCTTGCTCTTGCTATACGGAGGCAGAGGTTTTCTATTGGAGCTCCCTTTTCCTCTAACCTGCATTGTTTGTTTCACACTAGTGCTTTAATGTGATGTTGCTTTAGCATACTTTATTCCTTCTACATTTGCCTGATTTATCTATGTGGTGCATAGGAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGGGTAAGCACTCTTTTATTCCATACTTCCACTTCACTTGGAGGATCCTATAATATGTGCTGATCATATTTTAAATATCGAGAAACATGGTCAATAAGCATTCGTATTGTCAATCCCAACTTGTTTGGACCTGAGGTCTAGTTTTTGTTGTTGGATACCAATAGTTATCACTGACTAAACAATTCTATTTGTTACTCATTATTCATTAACAATATTTTAAGATTAATAACGTTCCTCTCTTTGCATTGTTATTTCTTACCTAGGTTTAGTAGGTGGATTTTTGAGTTTGGGTTAATTTCTAAAGGAATCGTTGTTGGATTACTGGGGCTGCACAAGCCTCCTTTATATAGGATGGAAGCAATGTGCACTACAGTTGTTGTAGTCATTTCTAATTTTTAGCTACTCTCCGGAAGCATTTCTGGAAGTGGAGGTTAAACTTGGCCTCTAAACTTTTTGGTTCTCTTGGATGTGCTCTCTTTTCATGTTAGAATATGAATTAATTGTTCTGTTGACGAAGATCAACACTTATGATTCATCAGACTATCAACTGTAGGGCAGGCAAAGCCATATCTTTCTTGAAACTAATCCAGATGCTCATCTGTATCTATGTGTGATTTTCTTTTGGATGTTCAAGAAAGAGGTCATTTTTAGTCTTCTTGGGCAATCCCTTACTTTTGTTTTTCTGTTTTCTCCGGTACAGTGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAGGTATGTTGTCTATCAGTGCTGGTGATCTCTCTGGTCACTTTCTGTTCTTGAGGTGTCTAATTTGGTGATCTATACTTCATGAGGTGAATTTACATAATTTGTATTGATTTTCTTCATGGTGTTTCACTTGTGGGAGCTTTTATTCTTTGTAAATTTTGTTTAATGAGCTGCAGCCTGCAGGTTCCTTTGTTGCTTGAACTCTTTTCATGTTCAGCTGTTTTTTTCTCATTTTAGGTTGATCCATCTGGTTCGTACTTCTC</genome_strand>
        <mrna_strand>GAGGAACAAGCTATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAG...............................................................................................TCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAG.........................................................................................................................................................................................................................................................................................................................................................TGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAAGAAGTCAGCTGAGCAATATTACCGACTCTATAAA..................................................................................................................................................................................................................................................................................................................................................GAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCATGAATTCACCCAATCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAC..........................................................................................................................................................................................................................................GTTGATCCATCTGGTTCGTACTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E305831" ref_strand="+" ref_description="SGN-E305831 [cLEX-14-P5]">
      <seq>gaggaacaagctatttctgcaaatcctctttgctgctgaaactttgcatcttcatcttcaacctctcgatcgttttcaactgaaaattagtccttaaggcaatgggtgatagtcagtattctttctcacttacaactttcagtccatctggaaagctggttcatattgagcatgcattgactgctgttggatctggccaaacatcattgggaattaaagcttctaatggtgttgtaattgctaccgagaagaaattaccatctatcttagttgatgaagcatctgtgcagaaaattcacactttgacatcaaatattggagttgtgtacagtggcatgggtcctgattctcgagttttggttcggaaaagtaggaagtcagctgagcaatattaccgactctataaagaaccaatccctgtcactcaactggtgagggaaactgctgctgtcatgcaggaattcacccaatcaggtggtgtaagaccatttggtgtttcactcttggttgcgggttttgatgacaagggtccacaactatatcaggttgatccatctggttcgtacttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="103994" stop="99463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103694" g_stop="103624" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103623" i_stop="103115" i_length="509">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103114" g_stop="103044" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="142" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103043" i_stop="102949" i_length="95">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102948" g_stop="102872" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="219" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102871" i_stop="102413" i_length="459">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102412" g_stop="102348" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="284" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102347" i_stop="101664" i_length="684">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101663" g_stop="101617" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="331" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101616" i_stop="101272" i_length="345">
            <donor d_prob="0.587" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101271" g_stop="101196" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="407" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101195" i_stop="100858" i_length="338">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100857" g_stop="100790" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="475" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100789" i_stop="100093" i_length="697">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100092" g_stop="100023" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="545" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100022" i_stop="99789" i_length="234">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="99788" g_stop="99763" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="571" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E305831" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103694" e_stop="103624"/>
          <exon e_start="103114" e_stop="103044"/>
          <exon e_start="102948" e_stop="102872"/>
          <exon e_start="102412" e_stop="102348"/>
          <exon e_start="101663" e_stop="101617"/>
          <exon e_start="101271" e_stop="101196"/>
          <exon e_start="100857" e_stop="100790"/>
          <exon e_start="100092" e_stop="100023"/>
          <exon e_start="99788" e_stop="99763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAACAAGCTATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATCGTATGTAAAATTTGATCTCTTATGCAATCGTAGATATAAATTGTCACAATGTTTTTTATTTTTCGCTTTAATTTACTTAGGTTTTATGCTTTTTTCCTTACTATTAAAATTATTCCTGTGTTATTTGATGCTTTTTTGGTTACTTTTTTATGTATTGAATAAAGAGATTGTGCACATTTTCTGATTAAATACGTGAATATTTCAATTTTTTGTTATACGAATCAGATATGAGAGAGATTAATCCGGGAGCAGCATACTTCGTTAGATCCCTGCAGCATTGTTAAAATTTAGCGATGAATATTAGTTTTAATGAAGTAGAAAAGAAGTGGAATATTTATTGGTGTTCAGTGAAGTTCTGGATATCGATTTTCGGTCTATTTACCTTTTGGTGAATTAGTTAATCATGGTTTAAAATAGTGAATTTGCAGTTTCAGTAATGATGTTAGTTAAGCTAGTGATTCTACTGTCTGACTTATACTGTTTTTGCTCGGAACGTTATCATTTTACAGGTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAGGTATAGGTTTATGAGATAGAACTTGTATGTATTGGATCAATTATATAGTTTCTACTCAATTTTGATGTCTGATATTGTAATATGCCGTGGCATAGTCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAGGTAACTCAAGGTCTAATTTAAATGCAAAGTTATTGATATGGCAATAGCGTTAACATATGTCTGCGATTATGTTCTATTCAGCATGTTCACTTGCTTTGTATTATAAAAAAGGTTATCGTAGAGAATGCCGAACAAGTTAACTCTGAAATATTTGAAACCGAATCTTGTAACATCGTTTTACTTCTAGTTGTTGATTTAAATGCTTTTGGCTCTGTAACATAGATGACTTGCATCCCCATACTGGGATTTTTAATTTAGTGAAGACTGAAGAATGTAGTTGTGACTTTATAAGCCAATAATACTATAATAGGATACACATGTCCTTCAGGTATTGTGGTGTGATTCTACTTCTCATTTAAGAGTTCCTTCTGGAGAAGTTTCAAGCTTTTGTTTTCCTAGCTCGATTAATAGTTGTGAAGTTCTTGTAGTGATTTTATATATCCAACTGTTTGATTGCAGCTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCTGTAAGTATATCCCGTAAAGTTTATCCTCTGTTGTCTATTTATGATAATGAATGTTCCTTGTATATTATAGTTGCCAGACTGACTGTTGATAGCTAATCAAATATAGTAGTGCTCTTATTTTTCTCTCTAAAGTTGATTCTAGTGATTTATTTTTATACTCTTAACTTTTTGTTGATAAAAATTTCCAATGACTGTGTTGGTGTGAGTAGTAGTTTGCAGTTTAGTAATAAGTTAGGCATAAGAGAAGATATCTTCTTTTTAGTTCAATCTATGAGTACCTGGTCTGATATCCAATTGAGCTTCATCAAGATTGAAACAAATGATGATTTTTTATTAAGTTTAGATAATTAGTCTGTTTGAATTTGCGTATGCATTGAAAATATATAAATTTTAGTAATGTTTACTTTACTGCTCTGTAGAGTTATATTCTAAATTATATTCACAAAAGCAGTTAGCCAGTTACCAGGTTACAACATACCAACAAGTGCATTCATGTTTGTAGTCTTTGGTGTTAAATTCGTATATTCTGTGGTTCGGTGATATTTATTTCTACCTATCACGTCTTGGAACTGCATGGGCATTCCAAGTGCCTTTTTGTTTTTGCTTTACATTCCTTAACCTTTGCCATGTTGCGTCTTCCTTTTAGTTTACCCTTCTACACCTGATTCTTTGAATGTATAACAGGTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAGGTACAATCTGTTATATGATAGAGCACAAAAAATTTCCTATGCCCATGGTGCTTTGTCCATAGTTGAATTGACAAATCGATTGGCGATTTGCCTTGCTTAGCTAGTTGCTATTCATTAGAACTTGAAACTAACAACTTGTTATACGTGGAAGGATGGTACCTATGAAAGCTGATATGGTTCTACTTCTGTTCCAAATTATCTTACAATATCCGTAAAGCATCAATATATGCCTTGCAAATGGTCTTAGTTCTCTGATATATCCTTCCACGGGGTGTTTTTATATGTTCTTGTGGTTACTGCATTACCTCTGGTGATCTCTCTAATACCAAAATTTACTCCTTGCAGTGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAAGTATGAATTAGCTTTCATCAAATCTCAATTCTATGATTCAAGTGCAGTATTTCCTTAATGATTCAAGTGTAATGTTACCACTCTGCCGGGTGATATTTGTACAATTGATATAACTGTCCTACTATTTTGCAATTTAAGATGCTTCTTCTTTGTATTGATGCTAACATATAAAGTTGCTGTCTAATCTTGCTCTTGCTATACGGAGGCAGAGGTTTTCTATTGGAGCTCCCTTTTCCTCTAACCTGCATTGTTTGTTTCACACTAGTGCTTTAATGTGATGTTGCTTTAGCATACTTTATTCCTTCTACATTTGCCTGATTTATCTATGTGGTGCATAGGAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGGGTAAGCACTCTTTTATTCCATACTTCCACTTCACTTGGAGGATCCTATAATATGTGCTGATCATATTTTAAATATCGAGAAACATGGTCAATAAGCATTCGTATTGTCAATCCCAACTTGTTTGGACCTGAGGTCTAGTTTTTGTTGTTGGATACCAATAGTTATCACTGACTAAACAATTCTATTTGTTACTCATTATTCATTAACAATATTTTAAGATTAATAACGTTCCTCTCTTTGCATTGTTATTTCTTACCTAGGTTTAGTAGGTGGATTTTTGAGTTTGGGTTAATTTCTAAAGGAATCGTTGTTGGATTACTGGGGCTGCACAAGCCTCCTTTATATAGGATGGAAGCAATGTGCACTACAGTTGTTGTAGTCATTTCTAATTTTTAGCTACTCTCCGGAAGCATTTCTGGAAGTGGAGGTTAAACTTGGCCTCTAAACTTTTTGGTTCTCTTGGATGTGCTCTCTTTTCATGTTAGAATATGAATTAATTGTTCTGTTGACGAAGATCAACACTTATGATTCATCAGACTATCAACTGTAGGGCAGGCAAAGCCATATCTTTCTTGAAACTAATCCAGATGCTCATCTGTATCTATGTGTGATTTTCTTTTGGATGTTCAAGAAAGAGGTCATTTTTAGTCTTCTTGGGCAATCCCTTACTTTTGTTTTTCTGTTTTCTCCGGTACAGTGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAGGTATGTTGTCTATCAGTGCTGGTGATCTCTCTGGTCACTTTCTGTTCTTGAGGTGTCTAATTTGGTGATCTATACTTCATGAGGTGAATTTACATAATTTGTATTGATTTTCTTCATGGTGTTTCACTTGTGGGAGCTTTTATTCTTTGTAAATTTTGTTTAATGAGCTGCAGCCTGCAGGTTCCTTTGTTGCTTGAACTCTTTTCATGTTCAGCTGTTTTTTTCTCATTTTAGGTTGATCCATCTGGTTCGTACTTCTC</genome_strand>
        <mrna_strand>GAGGAACAAGCTATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAG...............................................................................................TCCATCTGGAAAGCTGGTTCATATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGAAAATTCACACTTTGACATCAAATATTGGAGTTGTGTACAG.........................................................................................................................................................................................................................................................................................................................................................TGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAA..................................................................................................................................................................................................................................................................................................................................................GAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAG..........................................................................................................................................................................................................................................GTTGATCCATCTGGTTCGTACTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E275503" ref_strand="+" ref_description="SGN-E275503 [cLEN-10-A2]">
      <seq>tatttctgcaaatcctctttgctgctgaaactttgcatcttcatcttcaacctctcgatcgttttcaactgaaaattactccttaaggcaatgggtgatagtcagtattctttctcacttacaactttcagcccatctggaaagctggttcagattgagcatgcattgactgctgttggatctggccaaacatcattgggaattaaagcttctaatggagttgtaattgctaccgagaagaaattaccatctatcttaggtgatgaagcatctgtgcacaaaattcagactttgacatcaaatattggagttgtgtacagtggcatgggtcctgattctcgagttttggttcggaaaagtaggaagtcagctgagcaatattaccgactctataaagaaccaatccctgtcactcaactggtgagggaaactgctgctgtcatgcaggaattcacccaatcaggtggtgtaagaccatttggtgtttgactcttgggtgccggttttgatgacaagggtccacaactatatcaggttgatccatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="103983" stop="99716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103683" g_stop="103624" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103623" i_stop="103115" i_length="509">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103114" g_stop="103044" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="131" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103043" i_stop="102949" i_length="95">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102948" g_stop="102872" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="208" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102871" i_stop="102413" i_length="459">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102412" g_stop="102348" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="273" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102347" i_stop="101664" i_length="684">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101663" g_stop="101617" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="320" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101616" i_stop="101272" i_length="345">
            <donor d_prob="0.587" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101271" g_stop="101196" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="396" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101195" i_stop="100858" i_length="338">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100857" g_stop="100790" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="464" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100789" i_stop="100093" i_length="697">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100092" g_stop="100023" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="534" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100022" i_stop="99789" i_length="234">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="99788" g_stop="99776" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="547" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E275503" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103683" e_stop="103624"/>
          <exon e_start="103114" e_stop="103044"/>
          <exon e_start="102948" e_stop="102872"/>
          <exon e_start="102412" e_stop="102348"/>
          <exon e_start="101663" e_stop="101617"/>
          <exon e_start="101271" e_stop="101196"/>
          <exon e_start="100857" e_stop="100790"/>
          <exon e_start="100092" e_stop="100023"/>
          <exon e_start="99788" e_stop="99776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATCGTATGTAAAATTTGATCTCTTATGCAATCGTAGATATAAATTGTCACAATGTTTTTTATTTTTCGCTTTAATTTACTTAGGTTTTATGCTTTTTTCCTTACTATTAAAATTATTCCTGTGTTATTTGATGCTTTTTTGGTTACTTTTTTATGTATTGAATAAAGAGATTGTGCACATTTTCTGATTAAATACGTGAATATTTCAATTTTTTGTTATACGAATCAGATATGAGAGAGATTAATCCGGGAGCAGCATACTTCGTTAGATCCCTGCAGCATTGTTAAAATTTAGCGATGAATATTAGTTTTAATGAAGTAGAAAAGAAGTGGAATATTTATTGGTGTTCAGTGAAGTTCTGGATATCGATTTTCGGTCTATTTACCTTTTGGTGAATTAGTTAATCATGGTTTAAAATAGTGAATTTGCAGTTTCAGTAATGATGTTAGTTAAGCTAGTGATTCTACTGTCTGACTTATACTGTTTTTGCTCGGAACGTTATCATTTTACAGGTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAGGTATAGGTTTATGAGATAGAACTTGTATGTATTGGATCAATTATATAGTTTCTACTCAATTTTGATGTCTGATATTGTAATATGCCGTGGCATAGTCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAGGTAACTCAAGGTCTAATTTAAATGCAAAGTTATTGATATGGCAATAGCGTTAACATATGTCTGCGATTATGTTCTATTCAGCATGTTCACTTGCTTTGTATTATAAAAAAGGTTATCGTAGAGAATGCCGAACAAGTTAACTCTGAAATATTTGAAACCGAATCTTGTAACATCGTTTTACTTCTAGTTGTTGATTTAAATGCTTTTGGCTCTGTAACATAGATGACTTGCATCCCCATACTGGGATTTTTAATTTAGTGAAGACTGAAGAATGTAGTTGTGACTTTATAAGCCAATAATACTATAATAGGATACACATGTCCTTCAGGTATTGTGGTGTGATTCTACTTCTCATTTAAGAGTTCCTTCTGGAGAAGTTTCAAGCTTTTGTTTTCCTAGCTCGATTAATAGTTGTGAAGTTCTTGTAGTGATTTTATATATCCAACTGTTTGATTGCAGCTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCTGTAAGTATATCCCGTAAAGTTTATCCTCTGTTGTCTATTTATGATAATGAATGTTCCTTGTATATTATAGTTGCCAGACTGACTGTTGATAGCTAATCAAATATAGTAGTGCTCTTATTTTTCTCTCTAAAGTTGATTCTAGTGATTTATTTTTATACTCTTAACTTTTTGTTGATAAAAATTTCCAATGACTGTGTTGGTGTGAGTAGTAGTTTGCAGTTTAGTAATAAGTTAGGCATAAGAGAAGATATCTTCTTTTTAGTTCAATCTATGAGTACCTGGTCTGATATCCAATTGAGCTTCATCAAGATTGAAACAAATGATGATTTTTTATTAAGTTTAGATAATTAGTCTGTTTGAATTTGCGTATGCATTGAAAATATATAAATTTTAGTAATGTTTACTTTACTGCTCTGTAGAGTTATATTCTAAATTATATTCACAAAAGCAGTTAGCCAGTTACCAGGTTACAACATACCAACAAGTGCATTCATGTTTGTAGTCTTTGGTGTTAAATTCGTATATTCTGTGGTTCGGTGATATTTATTTCTACCTATCACGTCTTGGAACTGCATGGGCATTCCAAGTGCCTTTTTGTTTTTGCTTTACATTCCTTAACCTTTGCCATGTTGCGTCTTCCTTTTAGTTTACCCTTCTACACCTGATTCTTTGAATGTATAACAGGTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAGGTACAATCTGTTATATGATAGAGCACAAAAAATTTCCTATGCCCATGGTGCTTTGTCCATAGTTGAATTGACAAATCGATTGGCGATTTGCCTTGCTTAGCTAGTTGCTATTCATTAGAACTTGAAACTAACAACTTGTTATACGTGGAAGGATGGTACCTATGAAAGCTGATATGGTTCTACTTCTGTTCCAAATTATCTTACAATATCCGTAAAGCATCAATATATGCCTTGCAAATGGTCTTAGTTCTCTGATATATCCTTCCACGGGGTGTTTTTATATGTTCTTGTGGTTACTGCATTACCTCTGGTGATCTCTCTAATACCAAAATTTACTCCTTGCAGTGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAAGTATGAATTAGCTTTCATCAAATCTCAATTCTATGATTCAAGTGCAGTATTTCCTTAATGATTCAAGTGTAATGTTACCACTCTGCCGGGTGATATTTGTACAATTGATATAACTGTCCTACTATTTTGCAATTTAAGATGCTTCTTCTTTGTATTGATGCTAACATATAAAGTTGCTGTCTAATCTTGCTCTTGCTATACGGAGGCAGAGGTTTTCTATTGGAGCTCCCTTTTCCTCTAACCTGCATTGTTTGTTTCACACTAGTGCTTTAATGTGATGTTGCTTTAGCATACTTTATTCCTTCTACATTTGCCTGATTTATCTATGTGGTGCATAGGAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGGGTAAGCACTCTTTTATTCCATACTTCCACTTCACTTGGAGGATCCTATAATATGTGCTGATCATATTTTAAATATCGAGAAACATGGTCAATAAGCATTCGTATTGTCAATCCCAACTTGTTTGGACCTGAGGTCTAGTTTTTGTTGTTGGATACCAATAGTTATCACTGACTAAACAATTCTATTTGTTACTCATTATTCATTAACAATATTTTAAGATTAATAACGTTCCTCTCTTTGCATTGTTATTTCTTACCTAGGTTTAGTAGGTGGATTTTTGAGTTTGGGTTAATTTCTAAAGGAATCGTTGTTGGATTACTGGGGCTGCACAAGCCTCCTTTATATAGGATGGAAGCAATGTGCACTACAGTTGTTGTAGTCATTTCTAATTTTTAGCTACTCTCCGGAAGCATTTCTGGAAGTGGAGGTTAAACTTGGCCTCTAAACTTTTTGGTTCTCTTGGATGTGCTCTCTTTTCATGTTAGAATATGAATTAATTGTTCTGTTGACGAAGATCAACACTTATGATTCATCAGACTATCAACTGTAGGGCAGGCAAAGCCATATCTTTCTTGAAACTAATCCAGATGCTCATCTGTATCTATGTGTGATTTTCTTTTGGATGTTCAAGAAAGAGGTCATTTTTAGTCTTCTTGGGCAATCCCTTACTTTTGTTTTTCTGTTTTCTCCGGTACAGTGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAGGTATGTTGTCTATCAGTGCTGGTGATCTCTCTGGTCACTTTCTGTTCTTGAGGTGTCTAATTTGGTGATCTATACTTCATGAGGTGAATTTACATAATTTGTATTGATTTTCTTCATGGTGTTTCACTTGTGGGAGCTTTTATTCTTTGTAAATTTTGTTTAATGAGCTGCAGCCTGCAGGTTCCTTTGTTGCTTGAACTCTTTTCATGTTCAGCTGTTTTTTTCTCATTTTAGGTTGATCCATCTG</genome_strand>
        <mrna_strand>TATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCAACTGAAAATTACTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAG...............................................................................................CCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATGGAGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGGTGATGAAGCATCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAG.........................................................................................................................................................................................................................................................................................................................................................TGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAA..................................................................................................................................................................................................................................................................................................................................................GAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTAAGACCATTTGGTGTTTGACTCTTGGGTGCCGGTTTTGATGACAAGGGTCCACAACTATATCAG..........................................................................................................................................................................................................................................GTTGATCCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E305693" ref_strand="+" ref_description="SGN-E305693 [cLEX-14-P6]">
      <seq>gaggaacaagctatttctgcaaatcctctttgctgctgaaactttgcatcttcatcttcaacctctcgatcgttttcaactgaaaattagtccttaaggcaatgggtgatagtcagtattctttctcacttacaactttcagtccatctggaaagctggttcagattgagcatgcattgactgctgttggatctggccaaacatcattgggaattaaagcttctaatggtgttgtaattgctaccgagaagaaattaccatctatcttagttgatgaagcatctgtgcagaaaattcagactttgacatcaaatattggagttgtgtacagtggcatgggtcctgattctcgagttttggttcggaaaagtaggaagtcagctgagcaatattaccgactctataaagaaccaatccctgtcactcaactggtgagggaaactgctgctgtcatgcaggaattcacccaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="103994" stop="100493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103694" g_stop="103624" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103623" i_stop="103115" i_length="509">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103114" g_stop="103044" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="142" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103043" i_stop="102949" i_length="95">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102948" g_stop="102872" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="219" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102871" i_stop="102413" i_length="459">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102412" g_stop="102348" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="284" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102347" i_stop="101664" i_length="684">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101663" g_stop="101617" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="331" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101616" i_stop="101272" i_length="345">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101271" g_stop="101196" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="407" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101195" i_stop="100858" i_length="338">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100857" g_stop="100793" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="472" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E305693" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103694" e_stop="103624"/>
          <exon e_start="103114" e_stop="103044"/>
          <exon e_start="102948" e_stop="102872"/>
          <exon e_start="102412" e_stop="102348"/>
          <exon e_start="101663" e_stop="101617"/>
          <exon e_start="101271" e_stop="101196"/>
          <exon e_start="100857" e_stop="100793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAACAAGCTATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATCGTATGTAAAATTTGATCTCTTATGCAATCGTAGATATAAATTGTCACAATGTTTTTTATTTTTCGCTTTAATTTACTTAGGTTTTATGCTTTTTTCCTTACTATTAAAATTATTCCTGTGTTATTTGATGCTTTTTTGGTTACTTTTTTATGTATTGAATAAAGAGATTGTGCACATTTTCTGATTAAATACGTGAATATTTCAATTTTTTGTTATACGAATCAGATATGAGAGAGATTAATCCGGGAGCAGCATACTTCGTTAGATCCCTGCAGCATTGTTAAAATTTAGCGATGAATATTAGTTTTAATGAAGTAGAAAAGAAGTGGAATATTTATTGGTGTTCAGTGAAGTTCTGGATATCGATTTTCGGTCTATTTACCTTTTGGTGAATTAGTTAATCATGGTTTAAAATAGTGAATTTGCAGTTTCAGTAATGATGTTAGTTAAGCTAGTGATTCTACTGTCTGACTTATACTGTTTTTGCTCGGAACGTTATCATTTTACAGGTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAGGTATAGGTTTATGAGATAGAACTTGTATGTATTGGATCAATTATATAGTTTCTACTCAATTTTGATGTCTGATATTGTAATATGCCGTGGCATAGTCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAGGTAACTCAAGGTCTAATTTAAATGCAAAGTTATTGATATGGCAATAGCGTTAACATATGTCTGCGATTATGTTCTATTCAGCATGTTCACTTGCTTTGTATTATAAAAAAGGTTATCGTAGAGAATGCCGAACAAGTTAACTCTGAAATATTTGAAACCGAATCTTGTAACATCGTTTTACTTCTAGTTGTTGATTTAAATGCTTTTGGCTCTGTAACATAGATGACTTGCATCCCCATACTGGGATTTTTAATTTAGTGAAGACTGAAGAATGTAGTTGTGACTTTATAAGCCAATAATACTATAATAGGATACACATGTCCTTCAGGTATTGTGGTGTGATTCTACTTCTCATTTAAGAGTTCCTTCTGGAGAAGTTTCAAGCTTTTGTTTTCCTAGCTCGATTAATAGTTGTGAAGTTCTTGTAGTGATTTTATATATCCAACTGTTTGATTGCAGCTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCTGTAAGTATATCCCGTAAAGTTTATCCTCTGTTGTCTATTTATGATAATGAATGTTCCTTGTATATTATAGTTGCCAGACTGACTGTTGATAGCTAATCAAATATAGTAGTGCTCTTATTTTTCTCTCTAAAGTTGATTCTAGTGATTTATTTTTATACTCTTAACTTTTTGTTGATAAAAATTTCCAATGACTGTGTTGGTGTGAGTAGTAGTTTGCAGTTTAGTAATAAGTTAGGCATAAGAGAAGATATCTTCTTTTTAGTTCAATCTATGAGTACCTGGTCTGATATCCAATTGAGCTTCATCAAGATTGAAACAAATGATGATTTTTTATTAAGTTTAGATAATTAGTCTGTTTGAATTTGCGTATGCATTGAAAATATATAAATTTTAGTAATGTTTACTTTACTGCTCTGTAGAGTTATATTCTAAATTATATTCACAAAAGCAGTTAGCCAGTTACCAGGTTACAACATACCAACAAGTGCATTCATGTTTGTAGTCTTTGGTGTTAAATTCGTATATTCTGTGGTTCGGTGATATTTATTTCTACCTATCACGTCTTGGAACTGCATGGGCATTCCAAGTGCCTTTTTGTTTTTGCTTTACATTCCTTAACCTTTGCCATGTTGCGTCTTCCTTTTAGTTTACCCTTCTACACCTGATTCTTTGAATGTATAACAGGTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAGGTACAATCTGTTATATGATAGAGCACAAAAAATTTCCTATGCCCATGGTGCTTTGTCCATAGTTGAATTGACAAATCGATTGGCGATTTGCCTTGCTTAGCTAGTTGCTATTCATTAGAACTTGAAACTAACAACTTGTTATACGTGGAAGGATGGTACCTATGAAAGCTGATATGGTTCTACTTCTGTTCCAAATTATCTTACAATATCCGTAAAGCATCAATATATGCCTTGCAAATGGTCTTAGTTCTCTGATATATCCTTCCACGGGGTGTTTTTATATGTTCTTGTGGTTACTGCATTACCTCTGGTGATCTCTCTAATACCAAAATTTACTCCTTGCAGTGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAAGTATGAATTAGCTTTCATCAAATCTCAATTCTATGATTCAAGTGCAGTATTTCCTTAATGATTCAAGTGTAATGTTACCACTCTGCCGGGTGATATTTGTACAATTGATATAACTGTCCTACTATTTTGCAATTTAAGATGCTTCTTCTTTGTATTGATGCTAACATATAAAGTTGCTGTCTAATCTTGCTCTTGCTATACGGAGGCAGAGGTTTTCTATTGGAGCTCCCTTTTCCTCTAACCTGCATTGTTTGTTTCACACTAGTGCTTTAATGTGATGTTGCTTTAGCATACTTTATTCCTTCTACATTTGCCTGATTTATCTATGTGGTGCATAGGAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATC</genome_strand>
        <mrna_strand>GAGGAACAAGCTATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAG...............................................................................................TCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAG.........................................................................................................................................................................................................................................................................................................................................................TGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAA..................................................................................................................................................................................................................................................................................................................................................GAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E723463" ref_strand="+" ref_description="SGN-E723463 [FC20CC09]">
      <seq>aaatcctctttgctgctgaaactttgcatcttcatcttcaacctctcgatcgttttcaactgaaaattagtccttaaggcaatgggtgatagtcagtattctttctcacttacaactttcagtccatctggaaagctggttcaaattgagcatgcattgactgctgttggatctggccaaacatcattgggaattaaagcttctaatggtgttgtaattgctaccgagaagaaattaccatctatcttagttgatgaagcatctgtgcaaaaaattcaaactttgacatcaaatattggagttgtgtacagtgttatgggccctgattctcgagttttggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="103974" stop="100940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103674" g_stop="103624" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103623" i_stop="103115" i_length="509">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103114" g_stop="103044" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="122" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103043" i_stop="102949" i_length="95">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102948" g_stop="102872" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="199" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102871" i_stop="102413" i_length="459">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102412" g_stop="102348" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="264" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102347" i_stop="101664" i_length="684">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101663" g_stop="101617" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="311" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101616" i_stop="101272" i_length="345">
            <donor d_prob="0.587" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101271" g_stop="101240" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="343" r_length="32" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E723463" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103674" e_stop="103624"/>
          <exon e_start="103114" e_stop="103044"/>
          <exon e_start="102948" e_stop="102872"/>
          <exon e_start="102412" e_stop="102348"/>
          <exon e_start="101663" e_stop="101617"/>
          <exon e_start="101271" e_stop="101240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATCGTATGTAAAATTTGATCTCTTATGCAATCGTAGATATAAATTGTCACAATGTTTTTTATTTTTCGCTTTAATTTACTTAGGTTTTATGCTTTTTTCCTTACTATTAAAATTATTCCTGTGTTATTTGATGCTTTTTTGGTTACTTTTTTATGTATTGAATAAAGAGATTGTGCACATTTTCTGATTAAATACGTGAATATTTCAATTTTTTGTTATACGAATCAGATATGAGAGAGATTAATCCGGGAGCAGCATACTTCGTTAGATCCCTGCAGCATTGTTAAAATTTAGCGATGAATATTAGTTTTAATGAAGTAGAAAAGAAGTGGAATATTTATTGGTGTTCAGTGAAGTTCTGGATATCGATTTTCGGTCTATTTACCTTTTGGTGAATTAGTTAATCATGGTTTAAAATAGTGAATTTGCAGTTTCAGTAATGATGTTAGTTAAGCTAGTGATTCTACTGTCTGACTTATACTGTTTTTGCTCGGAACGTTATCATTTTACAGGTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAGGTATAGGTTTATGAGATAGAACTTGTATGTATTGGATCAATTATATAGTTTCTACTCAATTTTGATGTCTGATATTGTAATATGCCGTGGCATAGTCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAGGTAACTCAAGGTCTAATTTAAATGCAAAGTTATTGATATGGCAATAGCGTTAACATATGTCTGCGATTATGTTCTATTCAGCATGTTCACTTGCTTTGTATTATAAAAAAGGTTATCGTAGAGAATGCCGAACAAGTTAACTCTGAAATATTTGAAACCGAATCTTGTAACATCGTTTTACTTCTAGTTGTTGATTTAAATGCTTTTGGCTCTGTAACATAGATGACTTGCATCCCCATACTGGGATTTTTAATTTAGTGAAGACTGAAGAATGTAGTTGTGACTTTATAAGCCAATAATACTATAATAGGATACACATGTCCTTCAGGTATTGTGGTGTGATTCTACTTCTCATTTAAGAGTTCCTTCTGGAGAAGTTTCAAGCTTTTGTTTTCCTAGCTCGATTAATAGTTGTGAAGTTCTTGTAGTGATTTTATATATCCAACTGTTTGATTGCAGCTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCTGTAAGTATATCCCGTAAAGTTTATCCTCTGTTGTCTATTTATGATAATGAATGTTCCTTGTATATTATAGTTGCCAGACTGACTGTTGATAGCTAATCAAATATAGTAGTGCTCTTATTTTTCTCTCTAAAGTTGATTCTAGTGATTTATTTTTATACTCTTAACTTTTTGTTGATAAAAATTTCCAATGACTGTGTTGGTGTGAGTAGTAGTTTGCAGTTTAGTAATAAGTTAGGCATAAGAGAAGATATCTTCTTTTTAGTTCAATCTATGAGTACCTGGTCTGATATCCAATTGAGCTTCATCAAGATTGAAACAAATGATGATTTTTTATTAAGTTTAGATAATTAGTCTGTTTGAATTTGCGTATGCATTGAAAATATATAAATTTTAGTAATGTTTACTTTACTGCTCTGTAGAGTTATATTCTAAATTATATTCACAAAAGCAGTTAGCCAGTTACCAGGTTACAACATACCAACAAGTGCATTCATGTTTGTAGTCTTTGGTGTTAAATTCGTATATTCTGTGGTTCGGTGATATTTATTTCTACCTATCACGTCTTGGAACTGCATGGGCATTCCAAGTGCCTTTTTGTTTTTGCTTTACATTCCTTAACCTTTGCCATGTTGCGTCTTCCTTTTAGTTTACCCTTCTACACCTGATTCTTTGAATGTATAACAGGTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAGGTACAATCTGTTATATGATAGAGCACAAAAAATTTCCTATGCCCATGGTGCTTTGTCCATAGTTGAATTGACAAATCGATTGGCGATTTGCCTTGCTTAGCTAGTTGCTATTCATTAGAACTTGAAACTAACAACTTGTTATACGTGGAAGGATGGTACCTATGAAAGCTGATATGGTTCTACTTCTGTTCCAAATTATCTTACAATATCCGTAAAGCATCAATATATGCCTTGCAAATGGTCTTAGTTCTCTGATATATCCTTCCACGGGGTGTTTTTATATGTTCTTGTGGTTACTGCATTACCTCTGGTGATCTCTCTAATACCAAAATTTACTCCTTGCAGTGGCATGGGTCCTGATTCTCGAGTTTTGGTTC</genome_strand>
        <mrna_strand>AAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAG...............................................................................................TCCATCTGGAAAGCTGGTTCAAATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAAAAATTCAAACTTTGACATCAAATATTGGAGTTGTGTACAG.........................................................................................................................................................................................................................................................................................................................................................TGTTATGGGCCCTGATTCTCGAGTTTTGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E717293" ref_strand="+" ref_description="SGN-E717293 [FB19DB05]">
      <seq>ctggatgctctcatcgggcggctcagagccgcctatgaggagaacggtggctcccccgagacaaaccctttcgcgagcggcgcgattagggtgtatctaagggaagtgaaagagtgtcaagcaaaagcaagaggaattccgtacaagaagaaaaagaagaaggctagtgagagcaaaggagatgatgattgcacttcttctcacccattttcttgatccaaaaaatgaaaagtgatgaattgtgtcttcatgagaaggttattgctgaacacttaagggatttgctatatatatagctctggaagaattatgtttcatatttattaagtcatcatttgttgtttttttttatatatataagtgccttgatttcctttttttctgctaattaattaattagcagtcatgttcaatcagaggcattttcttcaaattattactgcttagtaatttaaatattctactgttctttcccattatatatttctcagttgtttgtgaatcctaaactagttctattgtaagatgattattataaactctttttgtacaattaagtgatcattaatttgaatccaaaaaaaaaaaaaaaaaaaaaacctcgaaattatttttcccccccccgggaatttttataaaaaaaaaaaaaaaatgtcggggaaaccttaggtgaagaacctttggaggggggaattgaagggaaaccttcccctttcgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="112550" stop="13527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112250" g_stop="112024" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112023" i_stop="108157" i_length="3867">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108156" g_stop="107798" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="587" r_length="360" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107797" i_stop="107654" i_length="144">
            <donor d_prob="0.718" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107653" g_stop="107642" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="599" r_length="12" r_score="0.750"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107641" i_stop="107566" i_length="76">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107565" g_stop="107515" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="649" r_length="50" r_score="0.529"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107514" i_stop="106295" i_length="1220">
            <donor d_prob="0.900" d_score="0.52"/>
            <acceptor a_prob="0.983" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106294" g_stop="106245" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="697" r_length="48" r_score="0.540"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106244" i_stop="106005" i_length="240">
            <donor d_prob="0.049" d_score="0.54"/>
            <acceptor a_prob="0.397" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106004" g_stop="105981" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="720" r_length="23" r_score="0.542"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E717293" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112250" e_stop="112024"/>
          <exon e_start="108156" e_stop="107798"/>
          <exon e_start="107653" e_stop="107642"/>
          <exon e_start="107565" e_stop="107515"/>
          <exon e_start="106294" e_stop="106245"/>
          <exon e_start="106004" e_stop="105981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATGCTCTCATCGGGCGGCTCAGAGCCGCCTATGAGGAGAACGGTGGCTCCCCCGAGACAAACCCTTTCGCGAGCGGCGCGATTAGGGTGTATCTAAGGGAAGTGAAAGAGTGTCAAGCAAAAGCAAGAGGAATTCCGTACAAGAAGAAAAAGAAGAAGGCTAGTGAGAGCAAAGGAGATGATGATTGCACTTCTTCTCACCCATTTTCTTGATCCAAAAAATGGTAAATTTTCTAACTTTTCTTTAATATTTGATTGCTTAGTTAATATACGTGAAAGGGGTTTTTATTTTTTATTTATTAAAACCATATTATAAAATATATGCAAAATTATATGATTAGGCTAATAATACTATCCCTAGAGACCAAATATAATGGGATAAAGAGGCATCTTTACATATAGATCCAAACTTGAAAAATATAGCAATACAAAGCTAGTTGAATATTCTATAGATTAATAAGAACTAGTATATGATATATGAAACAATATCATAATTTTATCTATATATAATCCAATAAAGTTGAACTTTAATTATATGTTGAACACTAGATTTCTGTGATCTAATTGGGAAATTAAAAATTTTAAAGTTTGGGGTTGATTTCTTATATGTTCACTCGATTAATAGTTAGTTCTTATCTCAGAAAGTCAATTTTCTTCAATGACACAGACTTAACGAAAAATAACTATTAGTTGAATACTAATCATATGAGAAATCAATTTGTTTTAACTTCCGCACCATGATGATAAGAGAAAGAAGCAAATTGCGTTAATCTTAAATATTAGCTACTGAATTTTGATCGATCATCGACCGGGGAATTAAAGTAGAAAATATTTAGCTAATTAATATTTTTCACCTCAAACCCTAGAAGTGATGGATAATTATGCAAAAAATTCATCATTTTTCTAACCTAAAAGTCTTTGATTAAAGCCACAATGTTAAAAGTACTATATACTTGCACCTCAAAGTCTTCGTAGAACTAGTCAATTTATTGTAATTCATGATATCACATATTCGAATCGTACAACAATCTCTTATAGAAATGTACTTGGAGAAGGCTTACAAACAATAGACTCTTATTGGTCCGACCCTTCCCTGAATCCCACACATAGAAAAATACATTATACCTTCATGAAAACTAATAAGTCTTCATTCAAGAATTTGGGAGCTATTCATGGTATATAATATGTCATCCTTACATTTTTTTTGTTTATATTCTTTTGGGATTCTGGAGATTTTGTGCACCCCACATATAGTCATTTGAGGTAACATAGGCTTTTTACATTTTTAATATAACAAGCATCTTAGAATTGACATTTTTTAATAGTTAAATTTATGTCCTATTCCACCTGAATCAATCAATCTATAGTAATTTACTCCACCATGCAATGCTCCCTCTCTTTATTTTTTTTAATAATTTATGAAAAAAGTGCGTTTTATAATGGATTTTTAAATCAACAAAATCATAATTGCAAATCTTTCTTATGTACGAGAAATCATAATATATAGTATTGATATTTCTTCAATTTCACGGTAACATTAATATATTACATTTCCTATTAGTGCGCATAGATAGATATAGGAAACAAATCTAGTAGTATTCATCTGAATCCATAACTTTAAGTCTAAATCTAAATTTATTCATATAACATAAACTAAAATTATTGAACTATGAATTGCAAGGGTGTCTAAGACCTATTGAAATCGTTGAAAGATTAAATTAAATAACGTAATCGCGATTCCACTTCTATAGATATAAATCACCTTATTATTGCAAGGGTAATATTGATATTTGAATGTTCAATATTGTTGTTTATTCGTCCTTTGTGTCTTTACAAGATTGCTCACTGTCTGTATTAGATCTTTGTGGGGGCATCACACTTATTCTTTATTTGTCAGAATGCTCTCTCTCTATATTTTTTTTTTTCATAAAAACAAATAATTATGTACTATAGTCTGTATGACATATTCCTATTTCCTCCATTATCGAAGTTGTTGGTTTCTAGCTGCATTTTTTGTCTTCTATTTGCTTCATTTATATGTTCATATCATTCAACTAATATATAATTTTCAAAAAAACATATTTTTTATCTAGTTGATTATAGTAACAATGTTGATTTTATGTGTTTGCTTCTAGTTTTAAAGATATGAATGACTATTTGTTACAAATGTGTGTATTATGTTAGCGTCCACTATTTTAAGCTCGTAGCTTCCTAGCTTTTCTTCTAGACTATAGCAAGTATAAAATGGTCAAGCAAATGAAAACTTATAGTATAAAATGAAGATGAATTTACTTCTATCATGTCAAGTAGGCTTTAATTAATTAACATATATAAATGGCAATATATTGGTAGAATTCTCAAGTTATTAGGTAAAGATGATTGAAAAGGTAACATTATTTGATACTTACTAAAATTATCTAATGGTAAGAAACCTAACAATTCACCCTTATAGAGCTTCTAACCCCCTGCAATGCCTCTGTCAGATAAGCAGGACTGACAAATTTTTAGGTTGACAAGCTTCTGAAGATGAGGTGCATATAAAATAAGAGAGGAAGAAAAGGAAAGGAAAGAACTTATTATATAAGATATAGTTTAAAATCATATGGTACAAATATTTTTTTAGGACTTGATATGATACATCCCTAAAATAAGTGCATAGGTCCAAATTATTTCACTTGGAATCTAAAATTCTGAATTTGATCCTTTTTGATATAACCAATCTCTTAGCATTCCCTTGCTAGCTTCTTTTCCCTAAATCTCTCGAGCAATAATACATGTCATGAATTTGGATCATAACAAATTTGGTATCAAAACGTGTTCTCCCTTAATGCAATGGTGGAACAAACTTTTGCCAGGACCTTGTTATGGTTCCCGGTTATGAATTTATTTATGGGATGCTGCAAGATAAAATTTGAAGTTTTCTTTTTTCTACCTCTGGTGCTGGTTCGTTAAGAGAGAACCTACGATCTCTTAAGTTTGAAGTACTCACAAAACTTGACTAATTTTCTGCCTATCATTTCACTAAATACAAATTACATTAGATACAACCTGGTGGATTAACCACCCATCTGAAAACAAGAAAGTAACTTCCTACTACAACGGAAATGAGAAAGTGGAGAAATAACCTCTTTACTGCTATACAAGAATAGGAAAAATAAGTAACTAAAAAATTGTAGTATTCTATTGCAAACAAAAATAAAAATAAAAAACTTAATTTCCTTAAATCTTGTATGTGTAAAACATTGTTAGACTACAAGGGGTGCTAACAGACCCTGAGTCTCTAAGTAGAGGTGTATGTGACACGTTGACGGAGGGCGATCAAGTGGGACTGAAAGATTTTTAGGTTGACAAATTAGTAACTATTAGGTGTACATGACAACTTAAGTAAATACTACTTTGATACATGAGAGAAGGAAATTACAAAATTTTATAAGACATAATATAAATTTATATGATACAAACTTTTAAGGCTCGATATAGCATAGTCCAAAAGACATGTCTTTAGACTTGAGTCATGGCACCCTAGGTCTAGTATTGCGATTCTTTTTCATCCCTTTGCTTCAACTTGTGCTTTTTTTTTTACAAAGAGTTTTAGATATACACGCCAAAGAAATTAATACGACATCTATCGATAAGTTAAATCTACTTAAAATGTGAAATTTTTAATTTAAAAAATACGACTAATTATCTATTCTAACAAGTGATCTCATGGTGTAAAAATTTTTTATATTGATGATCATGAATTTAAAGTATACTTTTTATACTTTTGAAATATATATCTTTAACTCCATTTCTGATGGGAGTTTAAGTTATATGTACATATCCTATAGAAGATCCGATTGTTTAAACATTTTCTACCATTATGATATATAAGTATAACCTATAATAATAATAATAATAATTATATTAGGGACATATTCGATATTTTCTTACAAGTGAGGTATAAAAGATAGGAGATACACAAAACTGTTTCCAATAGACCCTAGCTAGATTTAAAAGATGTATAGTTTTCTGATTAAATTCACTAGAAATTCAAATTTAATTATGATTACATTTAGTATATTATTATTTTTCTTGTTTTATTTTTGCAGAAAAGTGATGAATTGTGTCTTCATGAGAAGGTTATTGCTGAACACTTAAGGGATTTGCTATATATATAGCTCTGGAAGAATTATGTTTCATATTTATTAAGTCATCATTTGTTG-TTTTTTTTATATATATAAGTGCCTTGATTTCCTTTTTTTCTGCTAATTAATTAATTAGCAGTCATGTTCAATCAGAGGCATTTTCTTCAAATTATTACTGCTTAGTAATTTAAATATTCTACTGTTCTTTCCCATTATATATTTCTCAGTTGTTTGTGAATCCTAAACTAGTTCTATTGTAAGATGATTATTATAAACTCTTTTTGTACAATTAAGTGATCATTAATTTGAATCCAAACCCTACTGTACGTATATTACGTTGTTTATGCTTCTTTTTCGCCGTCTCAATTTATCTGATGCACTTTGACTAAACACAAAATGAGTATTCGTGTGATTATATTTAAATTATCTCATGAAAATGAAAGTTTAAAGTTAAATCATTTTTACATATAAAATCAAAAGTATCATTCTCGCCATCTCAATTTATCTGATACACTTTGACTAAACACAAAGTGAATATTTGTATGATTATTATCTCATGAAAACGAAAATTTTAAAGCTAAATTATTTCTATATATAAAATAAAAAATATCATTCTTTTTTTGAAACAGACTAAATAAAAGTGTAATACATATACATTTAGAAACATTCATCTGCAAATGGTCTTAGTTCTCAGATAAAAAATTAATGGAAAAAATCTGTAGAATAGCAAATAATTAACACATATTAGCTAGTATAGCTACATAGAGAAAAGTACAATTCACGGCTACAGTTTCTTTAATTTTTGTTATTCGTCTGATTTATATAATTTGTCATACATTGAGAAGTTGTATAATTTATTTTCTGATTATATAAATTTATAATTTTGTATGTGCTAATTACCCTAACTATTTGTATACGATTTATGAAAAAATCATAATAAATTACCTTGTTGTATATTGGCAAACAAAATATACAAATAAAGTTCTAAAAAATTCTTAAATATATAAATACAAAATTTGTGTATATATACTTACCCTATTTGCATGCATAAATATACAAACTGTACACCATCCATAACAAACAAAACTATAGTTATAGAGCCTTATTGTATCTATTATATTTGTTGTTTCTAAAATTTTCTCAAATTTCGTAGGGAGGCCTTCATCGTTAATGTTGAATTGTTGATGTTTTCATTGTTACAACATTACAACTGAAGTCATATTTATCCCTTCCACTAAGATTTTAAATTATTATGAATGTGGAAAAAAGATTTATTGGATATCCAATAAGTTAATTAGTTGAAAAGATTGAGAAATAACATATATAAAATTTATGCGATTAAATTTGAAGACAAATAAAATTGGAAAAATTATATGGATGGTGTCTTTTAATAAATAATTACAAATTTAGCTATACTTTTTATTTAATATCATTTATAACAATACCATGTTAAATCTGTAATATGTATTAAAAGTGAATTAAGTATGCAATATTTATGTATTATAACTATTTTTAAAAGTATATTATGCTTTTTTGGTAAGAAGTTTACACATTATAGTACAAGTGTATTAAAATGTATTATCCATCAATTAAACTTGTATTATATGTGAAGAATAAATTGTACTTTGTAATATGAATTAAAAATGATCAAGTGAAAAAAAAATATTATTACTATAAATGATAAATATTTTTTATTTATAGTATATTTACGTAAGTTTCCCAAAAACAATTATACTATCACTATATGAGGAGAGTATTTTTGGGTTAATTAGCTTTAACCCAATAACTTATATTAGAATAAATAGTTTGAATAATCATATGAATAGGAATACGGGGGCCACTTGCACCTTAACAAATCTAAAGAAGAGATTATTGAGTGTTTCGATAAAATTTATCTCAAAGCTATATATACTTAATGACGTTGAATCATATTTGAGATAAAATGAACAAATTCTAACCCCAAAATCCTATATAGGTCAATTAGTGGTATAATTATAGGTATAATTTATGTGTTTCATAAATATTACTAGTTCATTTGTGATGGATTTGTTGATTGAAAGGTGCATATTATTTCTCAATTTCATTATGTTTGTGCGAATATCAAATATTATAACAGGTGAAAACTATTCACTTATCCGTA</genome_strand>
        <mrna_strand>CTGGATGCTCTCATCGGGCGGCTCAGAGCCGCCTATGAGGAGAACGGTGGCTCCCCCGAGACAAACCCTTTCGCGAGCGGCGCGATTAGGGTGTATCTAAGGGAAGTGAAAGAGTGTCAAGCAAAAGCAAGAGGAATTCCGTACAAGAAGAAAAAGAAGAAGGCTAGTGAGAGCAAAGGAGATGATGATTGCACTTCTTCTCACCCATTTTCTTGATCCAAAAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGATGAATTGTGTCTTCATGAGAAGGTTATTGCTGAACACTTAAGGGATTTGCTATATATATAGCTCTGGAAGAATTATGTTTCATATTTATTAAGTCATCATTTGTTGTTTTTTTTTATATATATAAGTGCCTTGATTTCCTTTTTTTCTGCTAATTAATTAATTAGCAGTCATGTTCAATCAGAGGCATTTTCTTCAAATTATTACTGCTTAGTAATTTAAATATTCTACTGTTCTTTCCCATTATATATTTCTCAGTTGTTTGTGAATCCTAAACTAGTTCTATTGTAAGATGATTATTATAAACTCTTTTTGTACAATTAAGTGATCATTAATTTGAATCCAAAAAAAAAA................................................................................................................................................AAAAAAAAAAAA............................................................................CCTCGAAATTATTTTTCCCCCCCCCGGGAATTTTTATA-AAAAAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTCGGGGAAACCT-TAGGTGAA-GAACCTTTGGAGGGGGGAATTGA................................................................................................................................................................................................................................................AGGGAAAC-CTTCCCCTTTCGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E746964" ref_strand="+" ref_description="SGN-E746964 [GI|47104318]">
      <seq>gtgatttttatctcacaatacattttcttctattcctttaacctttgtataatctttccaatagttgccacaatttttggctacaaaaatcgatcaatcacaatccatttcaagaattccacttgaaaaaggaaaaaaaaaataatatgtcaaattttgatagaggcaaagaattggttgagggatcatcacctgcaacgcctagtcgatatgagtctcaaaaacgtcgtgactggaatacgtttggtcagtacctaaggaatcaaagaccacccgtttccatttcccaatgcaatagcaaccacgtgttggagttccttaggtacctagaccaatttgggaagactaaggttcatttgcaaggttgtatcttttatggtcaacccgagcccccggctccctgtacttgtccgttaagacaagcctgggggagcctggatgctctcatcgggcggctcagagccgcctatgaggagaacggtggctcccccgagacaaaccctttcgcgagcggcgcgattagggtgtatctaagggaagtgaaagagtgtcaagcaaaagcaagaggaattccgtacaagaagaaaaagaagaaggctagtgagagcaaaggagatgatgattgcacttcttctcacccattttcttgatccaaaaaatgaaaagtgatgaattgtgtcttcatgagaaggttattgctgaacacttaagggatttgctatatatatagctctggaagaattatgtttcatatttattaagtcatcatttgttgttttttttatatatataagtgccttgatttcctttttttctgctaattaattaattagcagtcatgttcaatcagaggcattttcttcaaattattactgcttagtaatttaaatattctactgttctttcccattatatatttctcagttgtttgtgaatcctaaactagttctattgtaagatgattattataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="112984" stop="107546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112684" g_stop="112024" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112023" i_stop="108157" i_length="3867">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108156" g_stop="107842" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="976" r_length="315" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E746964" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>976</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112684" e_stop="112024"/>
          <exon e_start="108156" e_stop="107842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTTTTATCTCACAATACATTTTCTTCTATTCCTTTAACCTTTGTATAATCTTTCCAATAGTTGCCACAATTTTTGGCTACAAAAATCGATCAATCACAATCCATTTCAAGAATTCCACTTGAAAAAGGAAAAAAAAAATAATATGTCAAATTTTGATAGAGGCAAAGAATTGGTTGAGGGATCATCACCTGCAACGCCTAGTCGATATGAGTCTCAAAAACGTCGTGACTGGAATACGTTTGGTCAGTACCTAAGGAATCAAAGACCACCCGTTTCCATTTCCCAATGCAATAGCAACCACGTGTTGGAGTTCCTTAGGTACCTAGACCAATTTGGGAAGACTAAGGTTCATTTGCAAGGTTGTATCTTTTATGGTCAACCCGAGCCCCCGGCTCCCTGTACTTGTCCGTTAAGACAAGCCTGGGGGAGCCTGGATGCTCTCATCGGGCGGCTCAGAGCCGCCTATGAGGAGAACGGTGGCTCCCCCGAGACAAACCCTTTCGCGAGCGGCGCGATTAGGGTGTATCTAAGGGAAGTGAAAGAGTGTCAAGCAAAAGCAAGAGGAATTCCGTACAAGAAGAAAAAGAAGAAGGCTAGTGAGAGCAAAGGAGATGATGATTGCACTTCTTCTCACCCATTTTCTTGATCCAAAAAATGGTAAATTTTCTAACTTTTCTTTAATATTTGATTGCTTAGTTAATATACGTGAAAGGGGTTTTTATTTTTTATTTATTAAAACCATATTATAAAATATATGCAAAATTATATGATTAGGCTAATAATACTATCCCTAGAGACCAAATATAATGGGATAAAGAGGCATCTTTACATATAGATCCAAACTTGAAAAATATAGCAATACAAAGCTAGTTGAATATTCTATAGATTAATAAGAACTAGTATATGATATATGAAACAATATCATAATTTTATCTATATATAATCCAATAAAGTTGAACTTTAATTATATGTTGAACACTAGATTTCTGTGATCTAATTGGGAAATTAAAAATTTTAAAGTTTGGGGTTGATTTCTTATATGTTCACTCGATTAATAGTTAGTTCTTATCTCAGAAAGTCAATTTTCTTCAATGACACAGACTTAACGAAAAATAACTATTAGTTGAATACTAATCATATGAGAAATCAATTTGTTTTAACTTCCGCACCATGATGATAAGAGAAAGAAGCAAATTGCGTTAATCTTAAATATTAGCTACTGAATTTTGATCGATCATCGACCGGGGAATTAAAGTAGAAAATATTTAGCTAATTAATATTTTTCACCTCAAACCCTAGAAGTGATGGATAATTATGCAAAAAATTCATCATTTTTCTAACCTAAAAGTCTTTGATTAAAGCCACAATGTTAAAAGTACTATATACTTGCACCTCAAAGTCTTCGTAGAACTAGTCAATTTATTGTAATTCATGATATCACATATTCGAATCGTACAACAATCTCTTATAGAAATGTACTTGGAGAAGGCTTACAAACAATAGACTCTTATTGGTCCGACCCTTCCCTGAATCCCACACATAGAAAAATACATTATACCTTCATGAAAACTAATAAGTCTTCATTCAAGAATTTGGGAGCTATTCATGGTATATAATATGTCATCCTTACATTTTTTTTGTTTATATTCTTTTGGGATTCTGGAGATTTTGTGCACCCCACATATAGTCATTTGAGGTAACATAGGCTTTTTACATTTTTAATATAACAAGCATCTTAGAATTGACATTTTTTAATAGTTAAATTTATGTCCTATTCCACCTGAATCAATCAATCTATAGTAATTTACTCCACCATGCAATGCTCCCTCTCTTTATTTTTTTTAATAATTTATGAAAAAAGTGCGTTTTATAATGGATTTTTAAATCAACAAAATCATAATTGCAAATCTTTCTTATGTACGAGAAATCATAATATATAGTATTGATATTTCTTCAATTTCACGGTAACATTAATATATTACATTTCCTATTAGTGCGCATAGATAGATATAGGAAACAAATCTAGTAGTATTCATCTGAATCCATAACTTTAAGTCTAAATCTAAATTTATTCATATAACATAAACTAAAATTATTGAACTATGAATTGCAAGGGTGTCTAAGACCTATTGAAATCGTTGAAAGATTAAATTAAATAACGTAATCGCGATTCCACTTCTATAGATATAAATCACCTTATTATTGCAAGGGTAATATTGATATTTGAATGTTCAATATTGTTGTTTATTCGTCCTTTGTGTCTTTACAAGATTGCTCACTGTCTGTATTAGATCTTTGTGGGGGCATCACACTTATTCTTTATTTGTCAGAATGCTCTCTCTCTATATTTTTTTTTTTCATAAAAACAAATAATTATGTACTATAGTCTGTATGACATATTCCTATTTCCTCCATTATCGAAGTTGTTGGTTTCTAGCTGCATTTTTTGTCTTCTATTTGCTTCATTTATATGTTCATATCATTCAACTAATATATAATTTTCAAAAAAACATATTTTTTATCTAGTTGATTATAGTAACAATGTTGATTTTATGTGTTTGCTTCTAGTTTTAAAGATATGAATGACTATTTGTTACAAATGTGTGTATTATGTTAGCGTCCACTATTTTAAGCTCGTAGCTTCCTAGCTTTTCTTCTAGACTATAGCAAGTATAAAATGGTCAAGCAAATGAAAACTTATAGTATAAAATGAAGATGAATTTACTTCTATCATGTCAAGTAGGCTTTAATTAATTAACATATATAAATGGCAATATATTGGTAGAATTCTCAAGTTATTAGGTAAAGATGATTGAAAAGGTAACATTATTTGATACTTACTAAAATTATCTAATGGTAAGAAACCTAACAATTCACCCTTATAGAGCTTCTAACCCCCTGCAATGCCTCTGTCAGATAAGCAGGACTGACAAATTTTTAGGTTGACAAGCTTCTGAAGATGAGGTGCATATAAAATAAGAGAGGAAGAAAAGGAAAGGAAAGAACTTATTATATAAGATATAGTTTAAAATCATATGGTACAAATATTTTTTTAGGACTTGATATGATACATCCCTAAAATAAGTGCATAGGTCCAAATTATTTCACTTGGAATCTAAAATTCTGAATTTGATCCTTTTTGATATAACCAATCTCTTAGCATTCCCTTGCTAGCTTCTTTTCCCTAAATCTCTCGAGCAATAATACATGTCATGAATTTGGATCATAACAAATTTGGTATCAAAACGTGTTCTCCCTTAATGCAATGGTGGAACAAACTTTTGCCAGGACCTTGTTATGGTTCCCGGTTATGAATTTATTTATGGGATGCTGCAAGATAAAATTTGAAGTTTTCTTTTTTCTACCTCTGGTGCTGGTTCGTTAAGAGAGAACCTACGATCTCTTAAGTTTGAAGTACTCACAAAACTTGACTAATTTTCTGCCTATCATTTCACTAAATACAAATTACATTAGATACAACCTGGTGGATTAACCACCCATCTGAAAACAAGAAAGTAACTTCCTACTACAACGGAAATGAGAAAGTGGAGAAATAACCTCTTTACTGCTATACAAGAATAGGAAAAATAAGTAACTAAAAAATTGTAGTATTCTATTGCAAACAAAAATAAAAATAAAAAACTTAATTTCCTTAAATCTTGTATGTGTAAAACATTGTTAGACTACAAGGGGTGCTAACAGACCCTGAGTCTCTAAGTAGAGGTGTATGTGACACGTTGACGGAGGGCGATCAAGTGGGACTGAAAGATTTTTAGGTTGACAAATTAGTAACTATTAGGTGTACATGACAACTTAAGTAAATACTACTTTGATACATGAGAGAAGGAAATTACAAAATTTTATAAGACATAATATAAATTTATATGATACAAACTTTTAAGGCTCGATATAGCATAGTCCAAAAGACATGTCTTTAGACTTGAGTCATGGCACCCTAGGTCTAGTATTGCGATTCTTTTTCATCCCTTTGCTTCAACTTGTGCTTTTTTTTTTACAAAGAGTTTTAGATATACACGCCAAAGAAATTAATACGACATCTATCGATAAGTTAAATCTACTTAAAATGTGAAATTTTTAATTTAAAAAATACGACTAATTATCTATTCTAACAAGTGATCTCATGGTGTAAAAATTTTTTATATTGATGATCATGAATTTAAAGTATACTTTTTATACTTTTGAAATATATATCTTTAACTCCATTTCTGATGGGAGTTTAAGTTATATGTACATATCCTATAGAAGATCCGATTGTTTAAACATTTTCTACCATTATGATATATAAGTATAACCTATAATAATAATAATAATAATTATATTAGGGACATATTCGATATTTTCTTACAAGTGAGGTATAAAAGATAGGAGATACACAAAACTGTTTCCAATAGACCCTAGCTAGATTTAAAAGATGTATAGTTTTCTGATTAAATTCACTAGAAATTCAAATTTAATTATGATTACATTTAGTATATTATTATTTTTCTTGTTTTATTTTTGCAGAAAAGTGATGAATTGTGTCTTCATGAGAAGGTTATTGCTGAACACTTAAGGGATTTGCTATATATATAGCTCTGGAAGAATTATGTTTCATATTTATTAAGTCATCATTTGTTGTTTTTTTTATATATATAAGTGCCTTGATTTCCTTTTTTTCTGCTAATTAATTAATTAGCAGTCATGTTCAATCAGAGGCATTTTCTTCAAATTATTACTGCTTAGTAATTTAAATATTCTACTGTTCTTTCCCATTATATATTTCTCAGTTGTTTGTGAATCCTAAACTAGTTCTATTGTAAGATGATTATTATAAACTCT</genome_strand>
        <mrna_strand>GTGATTTTTATCTCACAATACATTTTCTTCTATTCCTTTAACCTTTGTATAATCTTTCCAATAGTTGCCACAATTTTTGGCTACAAAAATCGATCAATCACAATCCATTTCAAGAATTCCACTTGAAAAAGGAAAAAAAAAATAATATGTCAAATTTTGATAGAGGCAAAGAATTGGTTGAGGGATCATCACCTGCAACGCCTAGTCGATATGAGTCTCAAAAACGTCGTGACTGGAATACGTTTGGTCAGTACCTAAGGAATCAAAGACCACCCGTTTCCATTTCCCAATGCAATAGCAACCACGTGTTGGAGTTCCTTAGGTACCTAGACCAATTTGGGAAGACTAAGGTTCATTTGCAAGGTTGTATCTTTTATGGTCAACCCGAGCCCCCGGCTCCCTGTACTTGTCCGTTAAGACAAGCCTGGGGGAGCCTGGATGCTCTCATCGGGCGGCTCAGAGCCGCCTATGAGGAGAACGGTGGCTCCCCCGAGACAAACCCTTTCGCGAGCGGCGCGATTAGGGTGTATCTAAGGGAAGTGAAAGAGTGTCAAGCAAAAGCAAGAGGAATTCCGTACAAGAAGAAAAAGAAGAAGGCTAGTGAGAGCAAAGGAGATGATGATTGCACTTCTTCTCACCCATTTTCTTGATCCAAAAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGATGAATTGTGTCTTCATGAGAAGGTTATTGCTGAACACTTAAGGGATTTGCTATATATATAGCTCTGGAAGAATTATGTTTCATATTTATTAAGTCATCATTTGTTGTTTTTTTTATATATATAAGTGCCTTGATTTCCTTTTTTTCTGCTAATTAATTAATTAGCAGTCATGTTCAATCAGAGGCATTTTCTTCAAATTATTACTGCTTAGTAATTTAAATATTCTACTGTTCTTTCCCATTATATATTTCTCAGTTGTTTGTGAATCCTAAACTAGTTCTATTGTAAGATGATTATTATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E541741" ref_strand="+" ref_description="SGN-E541741 [TUS-62-L1]">
      <seq>gtgatttttatctcacaatacattttcttctattcctttaacctttgtataatctttccaatagttgccacaatttttggctacaaaaatcgatcaatcacaatccatttcaagaattccacttgaaaaaggaaaaaaaaaataatatgtcaaattttgatagaggcaaagaattggttgagggatcatcacctgcaacgcctagtcgatatgagtctcaaaaacgtcgtgactggaatacgtttggtcagtacctaaggaatcaaagaccacccgtttccatttcccaatgcaatagcaaccacgtgttggagttccttaggtacctagaccaatttgggaagactaaggttcatttgcaaggttgtatcttttatggtcaacccgagcccccggctccctgtacttgtccgttaagacaagcctgggggagcctggatgctctcatcgggcggctcagagccgcctatgaggagaacggtggctcccccgagacaaaccctttcgcgagcggcgcgattagggtgtatctaagggaagtgaaagagtgtcaagcaaaagcaagaggaattccgtacaagaagaaaaagaagaaggctagtgagagcaaaggagatgatgattgcacttcttctcacccattttcttgatccaaaaaatgaaaagtgatgaattgtgtcttcatgagaaggttattgctgaacacttaagggatttgctatatatatagctctggaagaattatgtttcatatttattaagtcatcatttgttgtttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="112984" stop="107735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112684" g_stop="112024" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112023" i_stop="108157" i_length="3867">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108156" g_stop="108035" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="783" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E541741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112684" e_stop="112024"/>
          <exon e_start="108156" e_stop="108035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTTTTATCTCACAATACATTTTCTTCTATTCCTTTAACCTTTGTATAATCTTTCCAATAGTTGCCACAATTTTTGGCTACAAAAATCGATCAATCACAATCCATTTCAAGAATTCCACTTGAAAAAGGAAAAAAAAAATAATATGTCAAATTTTGATAGAGGCAAAGAATTGGTTGAGGGATCATCACCTGCAACGCCTAGTCGATATGAGTCTCAAAAACGTCGTGACTGGAATACGTTTGGTCAGTACCTAAGGAATCAAAGACCACCCGTTTCCATTTCCCAATGCAATAGCAACCACGTGTTGGAGTTCCTTAGGTACCTAGACCAATTTGGGAAGACTAAGGTTCATTTGCAAGGTTGTATCTTTTATGGTCAACCCGAGCCCCCGGCTCCCTGTACTTGTCCGTTAAGACAAGCCTGGGGGAGCCTGGATGCTCTCATCGGGCGGCTCAGAGCCGCCTATGAGGAGAACGGTGGCTCCCCCGAGACAAACCCTTTCGCGAGCGGCGCGATTAGGGTGTATCTAAGGGAAGTGAAAGAGTGTCAAGCAAAAGCAAGAGGAATTCCGTACAAGAAGAAAAAGAAGAAGGCTAGTGAGAGCAAAGGAGATGATGATTGCACTTCTTCTCACCCATTTTCTTGATCCAAAAAATGGTAAATTTTCTAACTTTTCTTTAATATTTGATTGCTTAGTTAATATACGTGAAAGGGGTTTTTATTTTTTATTTATTAAAACCATATTATAAAATATATGCAAAATTATATGATTAGGCTAATAATACTATCCCTAGAGACCAAATATAATGGGATAAAGAGGCATCTTTACATATAGATCCAAACTTGAAAAATATAGCAATACAAAGCTAGTTGAATATTCTATAGATTAATAAGAACTAGTATATGATATATGAAACAATATCATAATTTTATCTATATATAATCCAATAAAGTTGAACTTTAATTATATGTTGAACACTAGATTTCTGTGATCTAATTGGGAAATTAAAAATTTTAAAGTTTGGGGTTGATTTCTTATATGTTCACTCGATTAATAGTTAGTTCTTATCTCAGAAAGTCAATTTTCTTCAATGACACAGACTTAACGAAAAATAACTATTAGTTGAATACTAATCATATGAGAAATCAATTTGTTTTAACTTCCGCACCATGATGATAAGAGAAAGAAGCAAATTGCGTTAATCTTAAATATTAGCTACTGAATTTTGATCGATCATCGACCGGGGAATTAAAGTAGAAAATATTTAGCTAATTAATATTTTTCACCTCAAACCCTAGAAGTGATGGATAATTATGCAAAAAATTCATCATTTTTCTAACCTAAAAGTCTTTGATTAAAGCCACAATGTTAAAAGTACTATATACTTGCACCTCAAAGTCTTCGTAGAACTAGTCAATTTATTGTAATTCATGATATCACATATTCGAATCGTACAACAATCTCTTATAGAAATGTACTTGGAGAAGGCTTACAAACAATAGACTCTTATTGGTCCGACCCTTCCCTGAATCCCACACATAGAAAAATACATTATACCTTCATGAAAACTAATAAGTCTTCATTCAAGAATTTGGGAGCTATTCATGGTATATAATATGTCATCCTTACATTTTTTTTGTTTATATTCTTTTGGGATTCTGGAGATTTTGTGCACCCCACATATAGTCATTTGAGGTAACATAGGCTTTTTACATTTTTAATATAACAAGCATCTTAGAATTGACATTTTTTAATAGTTAAATTTATGTCCTATTCCACCTGAATCAATCAATCTATAGTAATTTACTCCACCATGCAATGCTCCCTCTCTTTATTTTTTTTAATAATTTATGAAAAAAGTGCGTTTTATAATGGATTTTTAAATCAACAAAATCATAATTGCAAATCTTTCTTATGTACGAGAAATCATAATATATAGTATTGATATTTCTTCAATTTCACGGTAACATTAATATATTACATTTCCTATTAGTGCGCATAGATAGATATAGGAAACAAATCTAGTAGTATTCATCTGAATCCATAACTTTAAGTCTAAATCTAAATTTATTCATATAACATAAACTAAAATTATTGAACTATGAATTGCAAGGGTGTCTAAGACCTATTGAAATCGTTGAAAGATTAAATTAAATAACGTAATCGCGATTCCACTTCTATAGATATAAATCACCTTATTATTGCAAGGGTAATATTGATATTTGAATGTTCAATATTGTTGTTTATTCGTCCTTTGTGTCTTTACAAGATTGCTCACTGTCTGTATTAGATCTTTGTGGGGGCATCACACTTATTCTTTATTTGTCAGAATGCTCTCTCTCTATATTTTTTTTTTTCATAAAAACAAATAATTATGTACTATAGTCTGTATGACATATTCCTATTTCCTCCATTATCGAAGTTGTTGGTTTCTAGCTGCATTTTTTGTCTTCTATTTGCTTCATTTATATGTTCATATCATTCAACTAATATATAATTTTCAAAAAAACATATTTTTTATCTAGTTGATTATAGTAACAATGTTGATTTTATGTGTTTGCTTCTAGTTTTAAAGATATGAATGACTATTTGTTACAAATGTGTGTATTATGTTAGCGTCCACTATTTTAAGCTCGTAGCTTCCTAGCTTTTCTTCTAGACTATAGCAAGTATAAAATGGTCAAGCAAATGAAAACTTATAGTATAAAATGAAGATGAATTTACTTCTATCATGTCAAGTAGGCTTTAATTAATTAACATATATAAATGGCAATATATTGGTAGAATTCTCAAGTTATTAGGTAAAGATGATTGAAAAGGTAACATTATTTGATACTTACTAAAATTATCTAATGGTAAGAAACCTAACAATTCACCCTTATAGAGCTTCTAACCCCCTGCAATGCCTCTGTCAGATAAGCAGGACTGACAAATTTTTAGGTTGACAAGCTTCTGAAGATGAGGTGCATATAAAATAAGAGAGGAAGAAAAGGAAAGGAAAGAACTTATTATATAAGATATAGTTTAAAATCATATGGTACAAATATTTTTTTAGGACTTGATATGATACATCCCTAAAATAAGTGCATAGGTCCAAATTATTTCACTTGGAATCTAAAATTCTGAATTTGATCCTTTTTGATATAACCAATCTCTTAGCATTCCCTTGCTAGCTTCTTTTCCCTAAATCTCTCGAGCAATAATACATGTCATGAATTTGGATCATAACAAATTTGGTATCAAAACGTGTTCTCCCTTAATGCAATGGTGGAACAAACTTTTGCCAGGACCTTGTTATGGTTCCCGGTTATGAATTTATTTATGGGATGCTGCAAGATAAAATTTGAAGTTTTCTTTTTTCTACCTCTGGTGCTGGTTCGTTAAGAGAGAACCTACGATCTCTTAAGTTTGAAGTACTCACAAAACTTGACTAATTTTCTGCCTATCATTTCACTAAATACAAATTACATTAGATACAACCTGGTGGATTAACCACCCATCTGAAAACAAGAAAGTAACTTCCTACTACAACGGAAATGAGAAAGTGGAGAAATAACCTCTTTACTGCTATACAAGAATAGGAAAAATAAGTAACTAAAAAATTGTAGTATTCTATTGCAAACAAAAATAAAAATAAAAAACTTAATTTCCTTAAATCTTGTATGTGTAAAACATTGTTAGACTACAAGGGGTGCTAACAGACCCTGAGTCTCTAAGTAGAGGTGTATGTGACACGTTGACGGAGGGCGATCAAGTGGGACTGAAAGATTTTTAGGTTGACAAATTAGTAACTATTAGGTGTACATGACAACTTAAGTAAATACTACTTTGATACATGAGAGAAGGAAATTACAAAATTTTATAAGACATAATATAAATTTATATGATACAAACTTTTAAGGCTCGATATAGCATAGTCCAAAAGACATGTCTTTAGACTTGAGTCATGGCACCCTAGGTCTAGTATTGCGATTCTTTTTCATCCCTTTGCTTCAACTTGTGCTTTTTTTTTTACAAAGAGTTTTAGATATACACGCCAAAGAAATTAATACGACATCTATCGATAAGTTAAATCTACTTAAAATGTGAAATTTTTAATTTAAAAAATACGACTAATTATCTATTCTAACAAGTGATCTCATGGTGTAAAAATTTTTTATATTGATGATCATGAATTTAAAGTATACTTTTTATACTTTTGAAATATATATCTTTAACTCCATTTCTGATGGGAGTTTAAGTTATATGTACATATCCTATAGAAGATCCGATTGTTTAAACATTTTCTACCATTATGATATATAAGTATAACCTATAATAATAATAATAATAATTATATTAGGGACATATTCGATATTTTCTTACAAGTGAGGTATAAAAGATAGGAGATACACAAAACTGTTTCCAATAGACCCTAGCTAGATTTAAAAGATGTATAGTTTTCTGATTAAATTCACTAGAAATTCAAATTTAATTATGATTACATTTAGTATATTATTATTTTTCTTGTTTTATTTTTGCAGAAAAGTGATGAATTGTGTCTTCATGAGAAGGTTATTGCTGAACACTTAAGGGATTTGCTATATATATAGCTCTGGAAGAATTATGTTTCATATTTATTAAGTCATCATTTGTTGTTTTTTTT</genome_strand>
        <mrna_strand>GTGATTTTTATCTCACAATACATTTTCTTCTATTCCTTTAACCTTTGTATAATCTTTCCAATAGTTGCCACAATTTTTGGCTACAAAAATCGATCAATCACAATCCATTTCAAGAATTCCACTTGAAAAAGGAAAAAAAAAATAATATGTCAAATTTTGATAGAGGCAAAGAATTGGTTGAGGGATCATCACCTGCAACGCCTAGTCGATATGAGTCTCAAAAACGTCGTGACTGGAATACGTTTGGTCAGTACCTAAGGAATCAAAGACCACCCGTTTCCATTTCCCAATGCAATAGCAACCACGTGTTGGAGTTCCTTAGGTACCTAGACCAATTTGGGAAGACTAAGGTTCATTTGCAAGGTTGTATCTTTTATGGTCAACCCGAGCCCCCGGCTCCCTGTACTTGTCCGTTAAGACAAGCCTGGGGGAGCCTGGATGCTCTCATCGGGCGGCTCAGAGCCGCCTATGAGGAGAACGGTGGCTCCCCCGAGACAAACCCTTTCGCGAGCGGCGCGATTAGGGTGTATCTAAGGGAAGTGAAAGAGTGTCAAGCAAAAGCAAGAGGAATTCCGTACAAGAAGAAAAAGAAGAAGGCTAGTGAGAGCAAAGGAGATGATGATTGCACTTCTTCTCACCCATTTTCTTGATCCAAAAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGATGAATTGTGTCTTCATGAGAAGGTTATTGCTGAACACTTAAGGGATTTGCTATATATATAGCTCTGGAAGAATTATGTTTCATATTTATTAAGTCATCATTTGTTGTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E302973" ref_strand="+" ref_description="SGN-E302973 [cLEW-26-A11]">
      <seq>tttcaagaattccacttgaaaaaggaaaaaaaaaataatatgtcaaattttgatagaggcaaagaattggttgagggatcatcacctgcaacgcctagtcgatatgagtctcaaaaacgtcgtgactggaatacgtttggtcagtacctaaggaatcaaagaccacccgtttccatttcccaatgcaatagcaaccacgtgttggagttccttaggtacctagaccaatttgggaagactaaggttcatttgcaaggttgtatcttttatggtcaacccgagcccccggctccctgtacttgtccgttaagacaagcctgggggagcctggatgctctcatcgggcggctcagagccgcctatgaggagaacggtggctcccccgagacaaaccctttcgcgagcggcgcgattagggtgtatctaagggaagtgaaagagtgtcaagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="112877" stop="111826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112577" g_stop="112126" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E302973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112577" e_stop="112126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAGAATTCCACTTGAAAAAGGAAAAAAAAAATAATATGTCAAATTTTGATAGAGGCAAAGAATTGGTTGAGGGATCATCACCTGCAACGCCTAGTCGATATGAGTCTCAAAAACGTCGTGACTGGAATACGTTTGGTCAGTACCTAAGGAATCAAAGACCACCCGTTTCCATTTCCCAATGCAATAGCAACCACGTGTTGGAGTTCCTTAGGTACCTAGACCAATTTGGGAAGACTAAGGTTCATTTGCAAGGTTGTATCTTTTATGGTCAACCCGAGCCCCCGGCTCCCTGTACTTGTCCGTTAAGACAAGCCTGGGGGAGCCTGGATGCTCTCATCGGGCGGCTCAGAGCCGCCTATGAGGAGAACGGTGGCTCCCCCGAGACAAACCCTTTCGCGAGCGGCGCGATTAGGGTGTATCTAAGGGAAGTGAAAGAGTGTCAAGCAAA</genome_strand>
        <mrna_strand>TTTCAAGAATTCCACTTGAAAAAGGAAAAAAAAAATAATATGTCAAATTTTGATAGAGGCAAAGAATTGGTTGAGGGATCATCACCTGCAACGCCTAGTCGATATGAGTCTCAAAAACGTCGTGACTGGAATACGTTTGGTCAGTACCTAAGGAATCAAAGACCACCCGTTTCCATTTCCCAATGCAATAGCAACCACGTGTTGGAGTTCCTTAGGTACCTAGACCAATTTGGGAAGACTAAGGTTCATTTGCAAGGTTGTATCTTTTATGGTCAACCCGAGCCCCCGGCTCCCTGTACTTGTCCGTTAAGACAAGCCTGGGGGAGCCTGGATGCTCTCATCGGGCGGCTCAGAGCCGCCTATGAGGAGAACGGTGGCTCCCCCGAGACAAACCCTTTCGCGAGCGGCGCGATTAGGGTGTATCTAAGGGAAGTGAAAGAGTGTCAAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E299736" ref_strand="+" ref_description="SGN-E299736 [cLEW-1-F22]">
      <seq>tgatttttatctcacaatacattttcttctattcctttaacctttgtataatctttccaatagttgccacaatttttggctacaaaaatcgatcaatcacaatccatttcaagaattccacttgaaaaaggaaaaaaaaaataatatgtcaaattttgatagaggcaaagaattggttgagggatcatcacctgcaacgcctagtcgatatgagtctcaaaaacgtcgtgactggaatacgtttggtcagtacctaaggaatcaaagaccacccgtttccatttcccaatgcaatagcaaccacgtgttggagttccttaggtacctagaccaatttgggaagactaaggttcatttgcaaggttgtatcttttatggtcaacccgagcccccggctccctgtacttgtccgttaagacaagcctgggggagcctggatgctctcatcgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="-" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="112983" stop="111932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112683" g_stop="112232" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="-" ref_id="SGN-E299736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112683" e_stop="112232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTTATCTCACAATACATTTTCTTCTATTCCTTTAACCTTTGTATAATCTTTCCAATAGTTGCCACAATTTTTGGCTACAAAAATCGATCAATCACAATCCATTTCAAGAATTCCACTTGAAAAAGGAAAAAAAAAATAATATGTCAAATTTTGATAGAGGCAAAGAATTGGTTGAGGGATCATCACCTGCAACGCCTAGTCGATATGAGTCTCAAAAACGTCGTGACTGGAATACGTTTGGTCAGTACCTAAGGAATCAAAGACCACCCGTTTCCATTTCCCAATGCAATAGCAACCACGTGTTGGAGTTCCTTAGGTACCTAGACCAATTTGGGAAGACTAAGGTTCATTTGCAAGGTTGTATCTTTTATGGTCAACCCGAGCCCCCGGCTCCCTGTACTTGTCCGTTAAGACAAGCCTGGGGGAGCCTGGATGCTCTCATCGGGC</genome_strand>
        <mrna_strand>TGATTTTTATCTCACAATACATTTTCTTCTATTCCTTTAACCTTTGTATAATCTTTCCAATAGTTGCCACAATTTTTGGCTACAAAAATCGATCAATCACAATCCATTTCAAGAATTCCACTTGAAAAAGGAAAAAAAAAATAATATGTCAAATTTTGATAGAGGCAAAGAATTGGTTGAGGGATCATCACCTGCAACGCCTAGTCGATATGAGTCTCAAAAACGTCGTGACTGGAATACGTTTGGTCAGTACCTAAGGAATCAAAGACCACCCGTTTCCATTTCCCAATGCAATAGCAACCACGTGTTGGAGTTCCTTAGGTACCTAGACCAATTTGGGAAGACTAAGGTTCATTTGCAAGGTTGTATCTTTTATGGTCAACCCGAGCCCCCGGCTCCCTGTACTTGTCCGTTAAGACAAGCCTGGGGGAGCCTGGATGCTCTCATCGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E258597" ref_strand="+" ref_description="SGN-E258597 [cLEG-47-L4]">
      <seq>gcttgtaaagcatcactttcacccaacggaccggtttcagaagacgctctcgagaaagttcggtccctattggataaaatcaagccttctgatgtgggtcttgagcaagaagcacaacttgtacggagttggaatagtactctgcacgagcgcaatggggaactacagccaccgccaccaatcaaatacctgcacttacatgaatgtgacagcttctctatggggatattttgcatgccgccttcctctatcatacctctacacaatcaccctgggatgacagtcttaagtaagctggtatatggttcctttcacgtgaaagcctatgattggatcaatattccaggtcctttggttccattggaaggtgcaagaccggcaaagctcgttaaagactgtgacatgactgctccgtgtgggacaactgctctgtatcctacttctggaggcaacatccattgtttcaaagctataactccttgtgctatttttgacatcctttctccgccttactcttctgaggatggacggcattgcacttatttccggaggtctccagtagcggatctgccaggtgaactcgaggtggatggagtgacattctccgacgtgacttggttgggagagtttcaacttcccgatgactttatgatccgtagagggcaatacaaaggccgtgtcatcaaaacatgacatgtttcattnntttggnntctgtccaacttttatgatgcattcanggtaaatgagtaacgtgtctaccgccggtctgagaataatgatgatgatttttatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="118024" stop="120317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118325" g_stop="118470" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="219" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118471" i_stop="118658" i_length="188">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118659" g_stop="118806" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="367" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118807" i_stop="119515" i_length="709">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.478" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119516" g_stop="119722" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="574" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119723" i_stop="119802" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119803" g_stop="120026" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="799" r_length="225" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E258597" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118325" e_stop="118470"/>
          <exon e_start="118659" e_stop="118806"/>
          <exon e_start="119516" e_stop="119722"/>
          <exon e_start="119803" e_stop="120026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCTGTAAGTGTGTCATTGTGCTTTCACCCTTTTTCTTTTTCCTTTTTTTTTCTGAAGGAGGTTTAGGGTGGGGGTTGTAGAGAGTGCTGATATTTGGAGAATATGGATGATTAATATCAATTTGTAGGGGTTCCAGTTGTAGAGAAATGATGCATGATTGAATCTTTTATCTTGTTTGGTGTTATTCGCAGATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAGGTGCGTAGTCTTTAATTGGATGTCTAGAATGTACTTGGTGGATATGCAATCATTCCGTTGCAGAACATAGAGTTTTCGGACTAGATGTTTTTGATGTGCTTGTTTTCTGCTATATTATTTCTAATTGGGTGGCAAGCCCTTTCTCATCTCTGGTTCTGTTGGCATGGTTTTCCGGCCTTTTCTTTTTATCATATTTGTTTTGTAGTTTGTTTCATGATATGCCTATTTTGGCCTTACAAACTCCTCTTTTCGAATTCAACCATAAAACTTACTGACTGAGAGCTAGGTATAAAGATTACAACTAAGTTTGAGGGTTTAATTGCATCATCTGCATAATTTGTGCTTGCTTGTACTAATAACCACTTTGTTGAGTTCTGTAAACTTGCAAAGTCGAGGGATCAGTTCCCATCTTGTGCAGAATTTTGTATCCCATGCACATAATTATATTACTTGTAAATAGTTGATTGCAACTGCGTGACCAAAGATTCTGAATAGAGAAATGCTAGTTTTTACGAGTTTATTTTCTCTTTCTTTATTGGTTCTAGTTTATCTAAGGTATTATTTTTTGGGATTAATGTTCATCATACAGGATTCTACTGCTACTTCTTCTCGACCTCTTGAATTCATATACAGTTACATATATACATACAATATACACACATCGCAGTTTGCTATCTTCAGCTGCTCGCTCCTAATGTTGCTTGCTCAGGTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACATCCTTTCTCCGCCTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGCGGATCTGCCAGGTAGTTGCACTGTGAGAAATTTTGCACAAATATGAATTGTATTGAAAATCTGAAGTACTTTGACATGTTTTTTTTTTAAGGTGAACTCGAGGTGGATGGAGTGACATTCTCCGACGTGACTTGGTTGGGAGAGTTTCAACTTCCCGATGACTTTATGATCCGTAGAGGGCAATACAAAGGCCGTGTCATCAAAACATGACATGTTTCATTTTTTTGG-TTCTGTCCAACTTTTATGATGCATTCAGGTAAAATGAGTAACGTGTCTACCGCCGGTCTGAGAATAATGATGATGATTTTTATATTG</genome_strand>
        <mrna_strand>ATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCT............................................................................................................................................................................................ATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACATCCTTTCTCCGCCTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGCGGATCTGCCAG................................................................................GTGAACTCGAGGTGGATGGAGTGACATTCTCCGACGTGACTTGGTTGGGAGAGTTTCAACTTCCCGATGACTTTATGATCCGTAGAGGGCAATACAAAGGCCGTGTCATCAAAACATGACATGTTTCATTNNTTTGGNNTCTGTCCAACTTTTATGATGCATTCANGGTAAATGAGTAACGTGTCTACCGCCGGTCTGAGAATAATGATGATGATTTTTATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E368886" ref_strand="-" ref_description="SGN-E368886 [TUS-26-K7]">
      <seq>gtaagctggtatatggttcctttcacgtgaaagcctatgattggatcaatattccaggtcctttggttccattggaaggtgcaagaccggcaaagctcgttanagactgtgacatgactgctccgtgtgggacaactgctctgtatcctacttctggaggcaacatccattgtttcaaagctataactccttgtgctatttttgacatcctttctccgccttactcttctgaggatggacggcattgcacttatttccggaggtctccagtagcggatctgccaggtgaactcgaggtggatggagtgacattctccgacgtgacttggttgggagagtttcaacttcccgatgactttatgatccgtagagggcaatacaaaggccgtgtcatcaaaacatgacatgtttcatttttttggttctgtccaacttttatgatgcattcaggtaaaatgagtaacgtgtctaccgccggtctgagaataatgatgatgatttttatattggtgagaaaataggggcatttgagatgtatatatcattatataccattacattaatttactgacctcaccttaaaatagttaacggttggttagacagagtataaatgaagttttgatccattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="118429" stop="120317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118729" g_stop="118806" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118807" i_stop="119515" i_length="709">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.478" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119516" g_stop="119722" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="285" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119723" i_stop="119802" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119803" g_stop="120157" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="640" r_length="355" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E368886" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368886" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="118729" e_stop="118806"/>
          <exon e_start="119516" e_stop="119722"/>
          <exon e_start="119803" e_stop="120157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAGGTGCGTAGTCTTTAATTGGATGTCTAGAATGTACTTGGTGGATATGCAATCATTCCGTTGCAGAACATAGAGTTTTCGGACTAGATGTTTTTGATGTGCTTGTTTTCTGCTATATTATTTCTAATTGGGTGGCAAGCCCTTTCTCATCTCTGGTTCTGTTGGCATGGTTTTCCGGCCTTTTCTTTTTATCATATTTGTTTTGTAGTTTGTTTCATGATATGCCTATTTTGGCCTTACAAACTCCTCTTTTCGAATTCAACCATAAAACTTACTGACTGAGAGCTAGGTATAAAGATTACAACTAAGTTTGAGGGTTTAATTGCATCATCTGCATAATTTGTGCTTGCTTGTACTAATAACCACTTTGTTGAGTTCTGTAAACTTGCAAAGTCGAGGGATCAGTTCCCATCTTGTGCAGAATTTTGTATCCCATGCACATAATTATATTACTTGTAAATAGTTGATTGCAACTGCGTGACCAAAGATTCTGAATAGAGAAATGCTAGTTTTTACGAGTTTATTTTCTCTTTCTTTATTGGTTCTAGTTTATCTAAGGTATTATTTTTTGGGATTAATGTTCATCATACAGGATTCTACTGCTACTTCTTCTCGACCTCTTGAATTCATATACAGTTACATATATACATACAATATACACACATCGCAGTTTGCTATCTTCAGCTGCTCGCTCCTAATGTTGCTTGCTCAGGTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACATCCTTTCTCCGCCTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGCGGATCTGCCAGGTAGTTGCACTGTGAGAAATTTTGCACAAATATGAATTGTATTGAAAATCTGAAGTACTTTGACATGTTTTTTTTTTAAGGTGAACTCGAGGTGGATGGAGTGACATTCTCCGACGTGACTTGGTTGGGAGAGTTTCAACTTCCCGATGACTTTATGATCCGTAGAGGGCAATACAAAGGCCGTGTCATCAAAACATGACATGTTTCATTTTTTTGGTTCTGTCCAACTTTTATGATGCATTCAGGTAAAATGAGTAACGTGTCTACCGCCGGTCTGAGAATAATGATGATGATTTTTATATTGGTGAGAAAATAGGGGCATTTGAGATGTATATATCATTATATACCATTACATTAATTTACTGACCTCACCTTAAAATAGTTAACGGTTGGTTAGACAGAGTATAAATGAAGTTTTGATCCATTAAAAAAGCA</genome_strand>
        <mrna_strand>GTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGACCGGCAAAGCTCGTTANAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACATCCTTTCTCCGCCTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGCGGATCTGCCAG................................................................................GTGAACTCGAGGTGGATGGAGTGACATTCTCCGACGTGACTTGGTTGGGAGAGTTTCAACTTCCCGATGACTTTATGATCCGTAGAGGGCAATACAAAGGCCGTGTCATCAAAACATGACATGTTTCATTTTTTTGGTTCTGTCCAACTTTTATGATGCATTCAGGTAAAATGAGTAACGTGTCTACCGCCGGTCTGAGAATAATGATGATGATTTTTATATTGGTGAGAAAATAGGGGCATTTGAGATGTATATATCATTATATACCATTACATTAATTTACTGACCTCACCTTAAAATAGTTAACGGTTGGTTAGACAGAGTATAAATGAAGTTTTGATCCATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-25Bouw/sgn_ests_tomato" ref_id="SGN-E286133" ref_strand="+" ref_description="SGN-E286133 [cLES-13-N21]">
      <seq>tctggaggcaacatccattgtttcaaagctataactccttgtgctatttttgacatcctttctccgccttactcttctgaggatggacggcattgcacttatttccggaggtctccagtagcggatctgccaggtgaactcgaggtggatggagtgacattctccgacgtgacttggttgggagagtttcaacttcccgatgactttatgatccgtagagggcaatacaaaggccgtgtcatcaaaacatgacatgtttcatttttttggttctgtccaacttttatgatgcattcaggtaaaatgagtaacgtgtctaccgccggtctgagaataatgatgatgatttttatattggtgagaaaataggggcatttgagatgtatatatcattatataccattacattaatttactgacctcaccttaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0096B05-rQjG0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0096B05.1" temp_strand="+" temp_description="C07SLm0096B05.1  AC216702.1 htgs_phase:1 submitted_to_sgn_as:gi|165933946|gb|AC216702.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0096B05, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="119290" stop="120317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119590" g_stop="119722" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119723" i_stop="119802" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119803" g_stop="120102" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="433" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0096B05.1" gen_strand="+" ref_id="SGN-E286133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0096B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119590" e_stop="119722"/>
          <exon e_start="119803" e_stop="120102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACATCCTTTCTCCGCCTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGCGGATCTGCCAGGTAGTTGCACTGTGAGAAATTTTGCACAAATATGAATTGTATTGAAAATCTGAAGTACTTTGACATGTTTTTTTTTTAAGGTGAACTCGAGGTGGATGGAGTGACATTCTCCGACGTGACTTGGTTGGGAGAGTTTCAACTTCCCGATGACTTTATGATCCGTAGAGGGCAATACAAAGGCCGTGTCATCAAAACATGACATGTTTCATTTTTTTGGTTCTGTCCAACTTTTATGATGCATTCAGGTAAAATGAGTAACGTGTCTACCGCCGGTCTGAGAATAATGATGATGATTTTTATATTGGTGAGAAAATAGGGGCATTTGAGATGTATATATCATTATATACCATTACATTAATTTACTGACCTCACCTTAAAAT</genome_strand>
        <mrna_strand>TCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACATCCTTTCTCCGCCTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGCGGATCTGCCAG................................................................................GTGAACTCGAGGTGGATGGAGTGACATTCTCCGACGTGACTTGGTTGGGAGAGTTTCAACTTCCCGATGACTTTATGATCCGTAGAGGGCAATACAAAGGCCGTGTCATCAAAACATGACATGTTTCATTTTTTTGGTTCTGTCCAACTTTTATGATGCATTCAGGTAAAATGAGTAACGTGTCTACCGCCGGTCTGAGAATAATGATGATGATTTTTATATTGGTGAGAAAATAGGGGCATTTGAGATGTATATATCATTATATACCATTACATTAATTTACTGACCTCACCTTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>125</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12005" PGL_stop="12452"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12005" e_stop="12452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="12005" e_stop="12452" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12005" stop="12326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12005" stop="12310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12006" stop="12452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCACAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTATAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACGGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGACTGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACACTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  Y  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  G  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  D  W  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  T  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  I  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  T  G  E  W  R  A  R  F  L  G  E  R  H  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  Q  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  R  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  L  E  S  G  E  R  D  F  W  E  R  D  T  G  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12192" stop="12452"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFINCIIKCITRRYTFLHVYIQFSLALYKTETELYTSVYKAREASETGEWRARFLGERHWQILANVCYGAQLNQTLAIPFNLGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17049" PGL_stop="15321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17049" e_stop="15321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="17049" e_stop="15321" e_length="1729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17049" stop="16339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16473" stop="15836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16433" stop="15806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16433" stop="15858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16383" stop="15831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16218" stop="15455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16191" stop="15621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15887" stop="15489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15701" stop="15321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCAATAATCCAAACACCTGAAGGTATCAAACCAGTGGGGTACAAATGGGTTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGACATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTTAGATATCTCATAAATCTGGCAGTTCATGAAAAAGTTGAAATGCGTCTGATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTTAAAGTGCCTGAAACATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGGACTGAAACAATCAGGAAGGATGTGGTACAATCGTTTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGTTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGCTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAATCATTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTAAAAGGAGGATACATCAAAGGAGACCAGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGAGTTTTCCTGGTAAGGTTTTTAAT</gDNA_template>
            <first_frame> K  *  C  N  K  M  K  I  L  S  Q  N  L  F  T  N  V  D  R  E  M  I  G  Q  N  G  R  M  Q  F  K  L  N  W  L  H  *  K  N  V  K  F  L  D  Q  *  S  K  H  L  K  V  S  N  Q  W  G  T  N  G  F  L  Y  E  K  E  M  R  K  V  K  S  *  D  I  R  P  D  S  L  L  K  V  F  L  K  D  L  T  L  I  I  W  R  H  I  L  Q  W  *  M  Q  S  P  L  D  I  S  *  I  W  Q  F  M  K  K  L  K  C  V  *  W  T  L  S  Q  P  I  Y  M  A  H  W  T  T  T  F  S  *  K  F  L  K  H  L  K  C  L  K  H  T  K  I  Q  E  K  L  V  Q  *  S  F  R  N  L  C  M  D  *  N  N  Q  E  G  C  G  T  I  V  *  V  N  I  C  *  R  K  G  T  K  M  T  R  F  V  P  A  F  S  L  N  G  W  G  L  N  L  *  *  *  L  C  M  L  M  I  *  T  S  L  E  L  V  K  S  F  *  K  L  L  S  V  *  K  E  N  L  K  *  K  I  S  A  R  Q  N  F  V  L  V  Y  R  L  R  I  C  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  R  Y  *  S  V  F  T  W  I  T  H  I  H  *  V  L  Q  W  W  *  D  L  L  T  S  I  Q  I  H  F  D  L  K  R  M  M  K  S  F  L  V  M  K  L  L  I  L  V  R  S  G  H  *  C  T  L  L  T  I  L  D  Q  I  S  V  L  Q  *  V  Y  W  Q  D  S  V  P  P  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  D  I  F  E  G  P  W  T  W  V  Y  S  I  P  M  N  P  N  Q  N  *  L  A  T  Q  M  Q  G  I  Y  Q  I  R  I  K  L  D  H  K  Q  A  I  C  L  H  V  E  T  R  Q  Y  L  G  D  Q  *  S  N  H  W  *  P  L  L  Q  I  M  Q  K  *  *  P  S  M  K  Q  V  E  S  A  S  G  *  D  Q  *  P  I  I  F  R  K  C  V  V  F  L  *  K  R  I  Y  Q  P  Q  C  T  K  I  M  L  H  V  *  L  N  *  K  E  D  T  S  K  E  T  R  Q  S  I  S  H  Q  S  S  F  S  R  M  I  F  N  K  M  V  R  *  K  F  N  K  F  V  Q  V  I  I  L  L  I  Y  S  L  R  H  C  Q  H  Q  H  L  R  S  *  D  T  R  L  E  C  A  V  S  E  I  S  S  K  V  F  I  R  G  S  E  I  R  V  V  L  F  S  L  T  M  V  L  S  Q  V  E  F  S  W  *  G  F  *  </first_frame>
            <second_frame>  N  N  A  T  R  *  R  F  *  A  K  I  C  S  R  M  *  T  E  K  *  L  A  K  M  E  G  C  N  S  S  *  I  G  F  T  R  K  T  *  S  F  W  T  N  N  P  N  T  *  R  Y  Q  T  S  G  V  Q  M  G  F  C  T  K  K  K  *  E  R  *  S  H  E  I  *  G  P  T  R  C  S  R  F  F  S  K  T  *  H  *  L  Y  G  D  I  F  S  S  G  R  C  N  H  L  *  I  S  H  K  S  G  S  S  *  K  S  *  N  A  S  D  G  R  C  H  S  L  S  I  W  L  I  G  P  Q  H  F  H  E  N  S  *  S  I  *  S  A  *  N  I  Q  R  F  K  R  N  L  F  N  K  A  S  E  I  S  V  W  T  E  T  I  R  K  D  V  V  Q  S  F  E  *  I  F  V  K  E  R  V  Q  K  *  P  D  L  S  L  H  F  H  *  T  V  G  V  *  I  C  N  N  S  C  V  C  *  *  F  E  H  H  W  N  S  *  R  A  F  R  S  C  *  V  S  E  K  R  I  *  N  E  R  S  R  Q  D  K  I  L  S  W  S  T  D  *  E  F  V  K  W  N  T  C  S  S  I  N  V  H  R  K  D  T  K  A  F  L  H  G  *  L  T  S  I  E  Y  S  N  G  G  K  I  S  *  H  Q  Y  R  S  I  S  T  S  R  E  *  *  R  V  S  W  *  *  N  S  L  S  *  C  D  R  G  T  N  V  P  C  *  Q  Y  S  T  R  Y  L  F  C  S  K  S  T  G  K  I  Q  F  L  P  N  K  K  T  L  E  W  C  *  T  H  T  S  I  S  S  R  D  H  G  H  G  F  I  L  F  Q  *  I  Q  I  R  T  D  W  L  R  R  C  R  V  F  I  R  S  A  *  S  S  I  T  N  R  L  F  V  Y  M  W  R  H  G  N  I  L  A  I  N  E  A  I  I  G  S  H  F  F  K  S  C  R  N  N  S  H  P  *  S  K  S  R  V  R  L  V  E  I  N  D  P  S  Y  S  E  N  V  W  F  F  F  E  K  E  Y  T  N  H  N  V  R  R  *  C  C  M  Y  S  S  I  K  R  R  I  H  Q  R  R  P  D  K  A  Y  L  T  K  V  L  F  H  A  *  S  S  T  K  W  *  D  R  S  S  T  N  S  F  K  *  *  S  C  *  F  I  H  *  G  I  A  N  I  N  I  *  E  V  E  I  Q  D  W  N  A  P  S  P  R  Y  Q  V  K  F  S  S  G  G  A  K  Y  A  L  Y  S  F  P  *  L  W  F  C  P  K  L  S  F  P  G  K  V  F  N </second_frame>
            <third_frame>   I  M  Q  Q  D  E  D  F  E  P  K  S  V  H  E  C  R  Q  R  N  D  W  P  K  W  K  D  A  I  Q  A  E  L  A  S  L  E  K  R  E  V  F  G  P  I  I  Q  T  P  E  G  I  K  P  V  G  Y  K  W  V  F  V  R  K  R  N  E  K  G  E  V  M  R  Y  K  A  R  L  V  A  Q  G  F  S  Q  R  P  D  I  D  Y  M  E  T  Y  S  P  V  V  D  A  I  T  F  R  Y  L  I  N  L  A  V  H  E  K  V  E  M  R  L  M  D  V  V  T  A  Y  L  Y  G  S  L  D  H  N  I  F  M  K  I  P  E  A  F  K  V  P  E  T  Y  K  D  S  R  E  T  C  S  I  K  L  Q  K  S  L  Y  G  L  K  Q  S  G  R  M  W  Y  N  R  L  S  E  Y  L  L  K  K  G  Y  K  N  D  P  I  C  P  C  I  F  I  K  R  L  G  S  E  F  V  I  I  A  V  Y  V  D  D  L  N  I  I  G  T  R  K  E  L  L  E  A  V  E  C  L  K  R  E  F  E  M  K  D  L  G  K  T  K  F  C  L  G  L  Q  I  E  N  L  S  N  G  I  L  V  H  Q  S  T  Y  T  E  K  I  L  K  R  F  Y  M  D  N  S  H  P  L  S  T  P  M  V  V  R  S  L  D  I  N  T  D  P  F  R  P  Q  E  N  D  E  E  F  L  G  D  E  T  P  Y  L  S  A  I  G  A  L  M  Y  L  A  N  N  T  R  P  D  I  C  F  A  V  S  L  L  A  R  F  S  S  S  P  T  K  R  H  W  N  G  V  K  H  I  L  R  Y  L  R  G  T  M  D  M  G  L  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  G  Y  L  S  D  P  H  K  A  R  S  Q  T  G  Y  L  F  T  C  G  D  T  A  I  S  W  R  S  M  K  Q  S  L  V  A  T  S  S  N  H  A  E  I  I  A  I  H  E  A  S  R  E  C  V  W  L  R  S  M  T  H  H  I  Q  K  M  C  G  F  S  L  K  K  N  I  P  T  T  M  Y  E  D  N  A  A  C  I  A  Q  L  K  G  G  Y  I  K  G  D  Q  T  K  H  I  S  P  K  F  F  F  T  H  D  L  Q  Q  N  G  E  I  E  V  Q  Q  I  R  S  S  D  N  L  A  D  L  F  T  K  A  L  P  T  S  T  F  E  K  L  R  Y  K  I  G  M  R  R  L  R  D  I  K  *  S  F  H  Q  G  E  R  N  T  R  C  T  L  F  L  N  Y  G  F  V  P  S  *  V  F  L  V  R  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17047" stop="15413"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1632</number_coding_nucleotides>
                  <number_encoded_amino_acids>544</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMQQDEDFEPKSVHECRQRNDWPKWKDAIQAELASLEKREVFGPIIQTPEGIKPVGYKWVFVRKRNEKGEVMRYKARLVAQGFSQRPDIDYMETYSPVVDAITFRYLINLAVHEKVEMRLMDVVTAYLYGSLDHNIFMKIPEAFKVPETYKDSRETCSIKLQKSLYGLKQSGRMWYNRLSEYLLKKGYKNDPICPCIFIKRLGSEFVIIAVYVDDLNIIGTRKELLEAVECLKREFEMKDLGKTKFCLGLQIENLSNGILVHQSTYTEKILKRFYMDNSHPLSTPMVVRSLDINTDPFRPQENDEEFLGDETPYLSAIGALMYLANNTRPDICFAVSLLARFSSSPTKRHWNGVKHILRYLRGTMDMGLFYSNESKSELIGYADAGYLSDPHKARSQTGYLFTCGDTAISWRSMKQSLVATSSNHAEIIAIHEASRECVWLRSMTHHIQKMCGFSLKKNIPTTMYEDNAACIAQLKGGYIKGDQTKHISPKFFFTHDLQQNGEIEVQQIRSSDNLADLFTKALPTSTFEKLRYKIGMRRLRDIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18925" PGL_stop="18359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18925" e_stop="18359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="18925" e_stop="18359" e_length="567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18925" stop="18359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18794" stop="18426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAAGTTGCTACTTGCAAAGAAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGCAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTTTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCTGGATTTAATATGATGCACAAAATCATTGAGAATTCACATGGACACACCTT</gDNA_template>
            <first_frame> T  K  L  L  L  A  K  K  S  P  V  V  S  W  I  Q  D  E  *  W  R  C  M  P  S  *  *  C  Y  N  A  Y  N  I  K  R  K  E  I  L  F  *  F  G  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  Q  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  G  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  *  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  L  L  Y  K  Y  K  Y  S  *  I  T  C  R  S  K  Q  K  V  Y  *  F  *  *  F  Y  H  L  A  *  P  V  G  P  S  W  I  *  Y  D  A  Q  N  H  *  E  F  T  W  T  H  L </first_frame>
            <second_frame>  R  S  C  Y  L  Q  R  N  P  Q  L  S  V  G  F  K  M  S  N  G  D  V  C  L  L  D  S  A  T  T  H  T  I  L  K  E  K  K  Y  F  S  N  L  V  M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  L  P  A  F  S  S  G  F  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  N  K  R  F  T  N  F  N  D  F  I  I  W  H  D  R  L  G  H  P  G  F  N  M  M  H  K  I  I  E  N  S  H  G  H  T   </second_frame>
            <third_frame>   E  V  A  T  C  K  E  I  P  S  C  Q  L  D  S  R  *  V  M  E  M  Y  A  F  L  I  V  L  Q  R  I  Q  Y  *  K  K  R  N  T  F  L  I  W  L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  A  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  L  R  R  K  L  C  M  K  N  Y  L  H  F  L  L  G  F  T  I  Q  V  *  V  Q  L  N  H  M  P  *  *  T  K  G  L  L  I  L  M  I  L  S  F  G  M  T  G  W  A  I  L  D  L  I  *  C  T  K  S  L  R  I  H  M  D  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18924" stop="18361"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSCYLQRNPQLSVGFKMSNGDVCLLDSATTHTILKEKKYFSNLVMKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETANEGKVEYLYITTINVEKKIVHEKLPAFSSGFYYTSISTVESHAVVNKRFTNFNDFIIWHDRLGHPGFNMMHKIIENSHGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="23323" PGL_stop="26646"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23323" e_stop="23815"/>
            <exon e_start="25039" e_stop="25430"/>
            <exon e_start="25715" e_stop="25799"/>
            <exon e_start="26546" e_stop="26646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.952" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="23323" e_stop="23815" e_length="493"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.952">
            <gDNA_intron_boundary i_start="23816" i_stop="25038" i_length="1223"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25039" e_stop="25430" e_length="392"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.902">
            <gDNA_intron_boundary i_start="25431" i_stop="25714" i_length="284"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25715" e_stop="25799" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25800" i_stop="26545" i_length="746"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="26546" e_stop="26646" e_length="101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23323" stop="23815"/>
              <exon start="25039" stop="25139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23364" stop="23815"/>
              <exon start="25039" stop="25294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23365" stop="23815"/>
              <exon start="25039" stop="25420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23365" stop="23815"/>
              <exon start="25039" stop="25271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23365" stop="23815"/>
              <exon start="25039" stop="25193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23367" stop="23815"/>
              <exon start="25039" stop="25275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23372" stop="23815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23376" stop="23815"/>
              <exon start="25039" stop="25194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23385" stop="23815"/>
              <exon start="25039" stop="25297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23388" stop="23815"/>
              <exon start="25039" stop="25259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23418" stop="23815"/>
              <exon start="25039" stop="25348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23628" stop="23815"/>
              <exon start="25039" stop="25430"/>
              <exon start="25715" stop="25799"/>
              <exon start="26546" stop="26646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739413" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGCTTAAGCAAAATCCCAAATACTCTGCAACTTTTCTTCAAATCACTTCTCTTTTTCTTCTTCTCTCTCGTGACCCATTAGTCTTCTCCTTTATTTCTACTTCTTCTGGATTTTTCCGTCACGGGAATCTTGAAATTGCCCATAAATAATTATTCACTCTGTTGTTACTTTTCCTAAATTTTTGAAAAAAATTGTGAATGTTTTGAGTTAATGCTGAAAATTGTTTGATACCCAGTTTTCTCCGTGATAAAGGGTGAAAGAATCCGTGATTTTTTTTCTTTTTCAACTTTGCTAGTTGATAAAAAGAGTGTTTTTTTTTTCGAAGATGAGTCGGAAAATTGAGAAAATGGCTTCAATTGATGCCCAATTGAGGCTATTGGCACCAGCGAAAGTGTCAGAGGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGACAGATTTCTTGATATTCTGCAGGATTTGCATGGAGAGGATATTCGAGAAACG : GTTCAAGATTGTTATGAACTATCTGCTGAATATGAAGGGAAACATGACCCACATAAGTTGGAAGAGCTTGGGAGTATGCTTACCAGTTTGGATGCTGGGGATTCCATTGTAGTCACCAAAGCCTTTTCTAACATGCTTAACTTGGGTAACCTTGCTGAAGAGGTTCAGATAGCTTACAGACGAAGAAGTAAGCTAAAAAAGCGTGATTTTTCGGATGAGGCTTCTGCACTAACTGAATCAGACATTGAAGAGACTTTTAAGAAGCTCGTCGGACAGCTAAACAAATCACCCCAAGAAGTTTTTGATGCTTTGAAGAACCAGACCGTGGACTTGGTGCTAACAGCACATCCTACCCAGTCTGTTCGTAGGTCTTTGCTTCAAAAGCATGCAAG : GATTCGTGATTGTATGACGCAGTTGTACGCCAAAGATATTACTCCTGATGATAAGCAGGAGCTAGACGAGGCTCTACAAAGAGAG : ATACAAGCAGCCTTTCGCACAGATGAAATCAGGAGGACTCCACCAACTCCACAAGATGAGATGAGGGCGGGGATGAGTTACTTCCATGAGACAATATGGAA</gDNA_template>
            <first_frame> K  S  L  S  K  I  P  N  T  L  Q  L  F  F  K  S  L  L  F  F  F  F  S  L  V  T  H  *  S  S  P  L  F  L  L  L  L  D  F  S  V  T  G  I  L  K  L  P  I  N  N  Y  S  L  C  C  Y  F  S  *  I  F  E  K  N  C  E  C  F  E  L  M  L  K  I  V  *  Y  P  V  F  S  V  I  K  G  E  R  I  R  D  F  F  S  F  S  T  L  L  V  D  K  K  S  V  F  F  F  E  D  E  S  E  N  *  E  N  G  F  N  *  C  P  I  E  A  I  G  T  S  E  S  V  R  G  *  *  A  C  G  V  *  C  F  V  A  *  Q  I  S  *  Y  S  A  G  F  A  W  R  G  Y  S  R  N   : G  S  R  L  L  *  T  I  C  *  I  *  R  E  T  *  P  T  *  V  G  R  A  W  E  Y  A  Y  Q  F  G  C  W  G  F  H  C  S  H  Q  S  L  F  *  H  A  *  L  G  *  P  C  *  R  G  S  D  S  L  Q  T  K  K  *  A  K  K  A  *  F  F  G  *  G  F  C  T  N  *  I  R  H  *  R  D  F  *  E  A  R  R  T  A  K  Q  I  T  P  R  S  F  *  C  F  E  E  P  D  R  G  L  G  A  N  S  T  S  Y  P  V  C  S  *  V  F  A  S  K  A  C  K  :  D  S  *  L  Y  D  A  V  V  R  Q  R  Y  Y  S  *  *  *  A  G  A  R  R  G  S  T  K  R   : D  T  S  S  L  S  H  R  *  N  Q  E  D  S  T  N  S  T  R  *  D  E  G  G  D  E  L  L  P  *  D  N  M  E </first_frame>
            <second_frame>  K  A  *  A  K  S  Q  I  L  C  N  F  S  S  N  H  F  S  F  S  S  S  L  S  *  P  I  S  L  L  L  Y  F  Y  F  F  W  I  F  P  S  R  E  S  *  N  C  P  *  I  I  I  H  S  V  V  T  F  P  K  F  L  K  K  I  V  N  V  L  S  *  C  *  K  L  F  D  T  Q  F  S  P  *  *  R  V  K  E  S  V  I  F  F  L  F  Q  L  C  *  L  I  K  R  V  F  F  F  S  K  M  S  R  K  I  E  K  M  A  S  I  D  A  Q  L  R  L  L  A  P  A  K  V  S  E  D  D  K  L  V  E  Y  D  A  L  L  L  D  R  F  L  D  I  L  Q  D  L  H  G  E  D  I  R  E  T  :  V  Q  D  C  Y  E  L  S  A  E  Y  E  G  K  H  D  P  H  K  L  E  E  L  G  S  M  L  T  S  L  D  A  G  D  S  I  V  V  T  K  A  F  S  N  M  L  N  L  G  N  L  A  E  E  V  Q  I  A  Y  R  R  R  S  K  L  K  K  R  D  F  S  D  E  A  S  A  L  T  E  S  D  I  E  E  T  F  K  K  L  V  G  Q  L  N  K  S  P  Q  E  V  F  D  A  L  K  N  Q  T  V  D  L  V  L  T  A  H  P  T  Q  S  V  R  R  S  L  L  Q  K  H  A  R :   I  R  D  C  M  T  Q  L  Y  A  K  D  I  T  P  D  D  K  Q  E  L  D  E  A  L  Q  R  E  :  I  Q  A  A  F  R  T  D  E  I  R  R  T  P  P  T  P  Q  D  E  M  R  A  G  M  S  Y  F  H  E  T  I  W   </second_frame>
            <third_frame>   K  L  K  Q  N  P  K  Y  S  A  T  F  L  Q  I  T  S  L  F  L  L  L  S  R  D  P  L  V  F  S  F  I  S  T  S  S  G  F  F  R  H  G  N  L  E  I  A  H  K  *  L  F  T  L  L  L  L  F  L  N  F  *  K  K  L  *  M  F  *  V  N  A  E  N  C  L  I  P  S  F  L  R  D  K  G  *  K  N  P  *  F  F  F  F  F  N  F  A  S  *  *  K  E  C  F  F  F  R  R  *  V  G  K  L  R  K  W  L  Q  L  M  P  N  *  G  Y  W  H  Q  R  K  C  Q  R  M  I  S  L  W  S  M  M  L  C  C  L  T  D  F  L  I  F  C  R  I  C  M  E  R  I  F  E  K  R :   F  K  I  V  M  N  Y  L  L  N  M  K  G  N  M  T  H  I  S  W  K  S  L  G  V  C  L  P  V  W  M  L  G  I  P  L  *  S  P  K  P  F  L  T  C  L  T  W  V  T  L  L  K  R  F  R  *  L  T  D  E  E  V  S  *  K  S  V  I  F  R  M  R  L  L  H  *  L  N  Q  T  L  K  R  L  L  R  S  S  S  D  S  *  T  N  H  P  K  K  F  L  M  L  *  R  T  R  P  W  T  W  C  *  Q  H  I  L  P  S  L  F  V  G  L  C  F  K  S  M  Q   : G  F  V  I  V  *  R  S  C  T  P  K  I  L  L  L  M  I  S  R  S  *  T  R  L  Y  K  E  R :   Y  K  Q  P  F  A  Q  M  K  S  G  G  L  H  Q  L  H  K  M  R  *  G  R  G  *  V  T  S  M  R  Q  Y  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23621" stop="23815"/>
                    <exon start="25039" stop="25430"/>
                    <exon start="25715" stop="25799"/>
                    <exon start="26546" stop="26644"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKRVFFFSKMSRKIEKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQDCYELSAEYEGKHDPHKLEELGSMLTSLDAGDSIVVTKAFSNMLNLGNLAEEVQIAYRRRSKLKKRDFSDEASALTESDIEETFKKLVGQLNKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRDCMTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="26654" PGL_stop="30483"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26654" e_stop="26768"/>
            <exon e_start="27169" e_stop="27272"/>
            <exon e_start="27367" e_stop="27454"/>
            <exon e_start="27645" e_stop="27799"/>
            <exon e_start="28304" e_stop="29302"/>
            <exon e_start="29585" e_stop="29971"/>
            <exon e_start="30060" e_stop="30483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.878" e_score="0.991"/>
          <exon-intron don_prob="0.675" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="26654" e_stop="26768" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.878">
            <gDNA_intron_boundary i_start="26769" i_stop="27168" i_length="400"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27169" e_stop="27272" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.675" acc_prob="0.983">
            <gDNA_intron_boundary i_start="27273" i_stop="27366" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27367" e_stop="27454" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.961">
            <gDNA_intron_boundary i_start="27455" i_stop="27644" i_length="190"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27645" e_stop="27799" e_length="155"/>
          </exon>
          <intron i_serial="4" don_prob="0.948" acc_prob="0.987">
            <gDNA_intron_boundary i_start="27800" i_stop="28303" i_length="504"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28304" e_stop="29302" e_length="999"/>
          </exon>
          <intron i_serial="5" don_prob="0.891" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29303" i_stop="29584" i_length="282"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29585" e_stop="29971" e_length="387"/>
          </exon>
          <intron i_serial="6" don_prob="0.957" acc_prob="0.987">
            <gDNA_intron_boundary i_start="29972" i_stop="30059" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30060" e_stop="30483" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26654" stop="26768"/>
              <exon start="27169" stop="27272"/>
              <exon start="27367" stop="27454"/>
              <exon start="27645" stop="27799"/>
              <exon start="28304" stop="28733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28456" stop="29302"/>
              <exon start="29585" stop="29640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28527" stop="28893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28538" stop="29040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28628" stop="29302"/>
              <exon start="29585" stop="29798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28649" stop="29302"/>
              <exon start="29585" stop="29696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28649" stop="29257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28729" stop="29302"/>
              <exon start="29585" stop="29699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28729" stop="28894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28848" stop="29302"/>
              <exon start="29585" stop="29971"/>
              <exon start="30060" stop="30126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28854" stop="29186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28894" stop="29302"/>
              <exon start="29585" stop="29699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28950" stop="29302"/>
              <exon start="29585" stop="29808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28974" stop="29302"/>
              <exon start="29585" stop="29904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29042" stop="29302"/>
              <exon start="29585" stop="29900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29073" stop="29302"/>
              <exon start="29585" stop="29932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29115" stop="29302"/>
              <exon start="29585" stop="29971"/>
              <exon start="30060" stop="30462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29198" stop="29302"/>
              <exon start="29585" stop="29971"/>
              <exon start="30060" stop="30298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29657" stop="29971"/>
              <exon start="30060" stop="30477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29657" stop="29971"/>
              <exon start="30060" stop="30475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29657" stop="29971"/>
              <exon start="30060" stop="30472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29684" stop="29971"/>
              <exon start="30060" stop="30479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29752" stop="29971"/>
              <exon start="30060" stop="30455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29783" stop="29971"/>
              <exon start="30060" stop="30342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29817" stop="29971"/>
              <exon start="30060" stop="30382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29817" stop="29971"/>
              <exon start="30060" stop="30243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29932" stop="29971"/>
              <exon start="30060" stop="30483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29968" stop="29971"/>
              <exon start="30060" stop="30207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30099" stop="30465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30141" stop="30459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234407" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGAAATTCCTACGCCGTGTTGACACTGCTTTGAAGAATATTGGAATAAATGAACGTGTTCCCTACAATGCCCCTCTCATTCAGTTCTCTTCTTGGATGGGTGGTGATCGAGATG : GCAACCCTAGAGTAACCCCGGAAGTGACAAGAGATGTGTGCTTATTGGCTAGAATGATGGCTGCAAATCTGTATTTCTCTCAGATTGAGGATCTTATGTTTGAG : CTTTCAATGTGGCGATGCAATGATGAGCTCCGTGTCCGTGCAGAAGAACTTCATAGGACTTCCAAAAGAGATGCAAAGCACTACATTG : AATTTTGGAAGAAAATTCCACCGAATGAGCCCTACCGTGTTCTTCTTGCTGATGTGAGAGATAGGTTATATAATACACAGGAACGAGCTCGTCAGTTACTAGCCAATGGGTATTCTGATGTTCCTGAGGAGTCGACATTCACAAATCTTGAACAG : TTTCTGGAACCTCTGGAGCTGTGCTATAGATCTCTATGCGCTTGTGGTGACAGACCAATTGCAGATGGAAGCCTTCTTGATTTTTTAAGGCAAGTGTCCACCTTTGGTCTGTCGCTTGTGAGACTTGATATTCGGCAAGAGTCAGATAGACACACTGATGTTCTAGATGTTATAACAAGGCACGTGGGTGTTGGCTCCTATAAAGAATGGTCTGAAGAGAAGAGACAGGAATGGCTCTTATCTGAACTAAGTGGCAAGCGTCCACTTTTTGGACCTGATCTCCCTAAAACTGATGAAGTCGCTGATGTTTTGGATACCTTTCATGTCATCTCCGAACTTCCCGCCGACAGTTTCGGTGCTTATATAATTTCGATGGCCACGGCACCCTCTGATGTGCTTGCTGTTGAGCTTTTGCAGCGTGAATGTCATGTAAAAAGTCCATTGAGGGTTGTTCCGTTGTTTGAAAAGCTTGCTGATCTCGAGTCTGCACCTGCTTCTGTTGCTCGGTTGTTCTCCATAGATTGGTACAGAAACCGTATCAATGGGAAACAAGAAGTTATGATTGGGTATTCTGATTCCGGTAAGGATGCTGGCCGACTATCTGCAGCTTGGCAATTGTACAAGGCTCAAGAGGAACTTGTAAAGGTGGCAAAAGAATTTGGAGTAAAGCTAACAATGTTCCATGGCCGAGGTGGGACTGTAGGAAGGGGAGGGGGTCCCACCCACCTTGCTATTTTATCACAACCCCCAGACACAATTCATGGCTCACTTCGTGTGACTGTTCAAGGTGAAGTTATTGAACAGTCATTTGGGGAGGAACACCTGTGCTTTAGAACTCTTCAGCGTTTCACAGCAGCTACACTTGAGCATGGAATGAACCCCCCTGTGGCTCCTAATCCAGAGTGGCGTGCCCTCTTGGATGAGATGTCTGTTGTTGCTACGAAAGAGTATCGGTCTTTAGTGTTCCAGGATCCACGATTTGTTGAATACTTCCGCCTT : GCAACCCCAGAATTAGAATATGGTCGCATGAACATTGGAAGTCGCCCAGCCAAAAGGAAGCCAAGTGGTGGGATTGAATCTCTTCGAGCTATTCCATGGATCTTTGCATGGACTCAGACAAGGTTTCATCTCCCAGTCTGGCTTGGCTTTGGGGCTGCATTCAAGCACGTTATTGAGAAGGATATAAGAAATCTGCAAATGCTCAAGGATATGTACAATGGATGGCCTTTCTTTAGAGTGACACTTGACTTGCTCGAAATGGTCTTCGCTAAGGGAGACCCTGGTATTGCTGCATTGTATGATAAACTTTTAGTATCCGAAGATCTGTGGCCGCTTGGAGAGCGATTGAGATCCAAATACGAAGAAACAAAGGGCTTTCTCCTTCAG : GTTGCTGGGCACAAGGATCTATTGGAAGGAGATCCATACTTGAGGCAAAGGCTCAAACTTCGTGATTCTTACATCACGACCCTTAACGTAAGCCAAGCATACACATTGAAACGAATTCGTGACCCCAACTACAATGTGAAGGTCAGACCTCACCTAGACAAGGAGATCATGGAATCAAGCAAACCAGCTGCTGAATTAGTGAAGCTGAATCCTACGAGCGAGTATGCGCCTGGCTTGGAAGACACCCTCATCTTGACCATGAAAGGTATTGCTGCTGGAATGCAGAACACTGGTTAAGGCTAAGGCTATTATGTATGTATAATAATAAGTGATATTGTCTTTCAACTTTTATAAATCCTATGTCTGTTCAAGAATAATAATGATGAGATGTTTCTGAAGGATTTGAGTGTGTGATTTTTGATTC</gDNA_template>
            <first_frame> P  K  F  L  R  R  V  D  T  A  L  K  N  I  G  I  N  E  R  V  P  Y  N  A  P  L  I  Q  F  S  S  W  M  G  G  D  R  D   : G  N  P  R  V  T  P  E  V  T  R  D  V  C  L  L  A  R  M  M  A  A  N  L  Y  F  S  Q  I  E  D  L  M  F  E  :  L  S  M  W  R  C  N  D  E  L  R  V  R  A  E  E  L  H  R  T  S  K  R  D  A  K  H  Y  I   : E  F  W  K  K  I  P  P  N  E  P  Y  R  V  L  L  A  D  V  R  D  R  L  Y  N  T  Q  E  R  A  R  Q  L  L  A  N  G  Y  S  D  V  P  E  E  S  T  F  T  N  L  E  Q  :  F  L  E  P  L  E  L  C  Y  R  S  L  C  A  C  G  D  R  P  I  A  D  G  S  L  L  D  F  L  R  Q  V  S  T  F  G  L  S  L  V  R  L  D  I  R  Q  E  S  D  R  H  T  D  V  L  D  V  I  T  R  H  V  G  V  G  S  Y  K  E  W  S  E  E  K  R  Q  E  W  L  L  S  E  L  S  G  K  R  P  L  F  G  P  D  L  P  K  T  D  E  V  A  D  V  L  D  T  F  H  V  I  S  E  L  P  A  D  S  F  G  A  Y  I  I  S  M  A  T  A  P  S  D  V  L  A  V  E  L  L  Q  R  E  C  H  V  K  S  P  L  R  V  V  P  L  F  E  K  L  A  D  L  E  S  A  P  A  S  V  A  R  L  F  S  I  D  W  Y  R  N  R  I  N  G  K  Q  E  V  M  I  G  Y  S  D  S  G  K  D  A  G  R  L  S  A  A  W  Q  L  Y  K  A  Q  E  E  L  V  K  V  A  K  E  F  G  V  K  L  T  M  F  H  G  R  G  G  T  V  G  R  G  G  G  P  T  H  L  A  I  L  S  Q  P  P  D  T  I  H  G  S  L  R  V  T  V  Q  G  E  V  I  E  Q  S  F  G  E  E  H  L  C  F  R  T  L  Q  R  F  T  A  A  T  L  E  H  G  M  N  P  P  V  A  P  N  P  E  W  R  A  L  L  D  E  M  S  V  V  A  T  K  E  Y  R  S  L  V  F  Q  D  P  R  F  V  E  Y  F  R  L  :  A  T  P  E  L  E  Y  G  R  M  N  I  G  S  R  P  A  K  R  K  P  S  G  G  I  E  S  L  R  A  I  P  W  I  F  A  W  T  Q  T  R  F  H  L  P  V  W  L  G  F  G  A  A  F  K  H  V  I  E  K  D  I  R  N  L  Q  M  L  K  D  M  Y  N  G  W  P  F  F  R  V  T  L  D  L  L  E  M  V  F  A  K  G  D  P  G  I  A  A  L  Y  D  K  L  L  V  S  E  D  L  W  P  L  G  E  R  L  R  S  K  Y  E  E  T  K  G  F  L  L  Q  :  V  A  G  H  K  D  L  L  E  G  D  P  Y  L  R  Q  R  L  K  L  R  D  S  Y  I  T  T  L  N  V  S  Q  A  Y  T  L  K  R  I  R  D  P  N  Y  N  V  K  V  R  P  H  L  D  K  E  I  M  E  S  S  K  P  A  A  E  L  V  K  L  N  P  T  S  E  Y  A  P  G  L  E  D  T  L  I  L  T  M  K  G  I  A  A  G  M  Q  N  T  G  *  G  *  G  Y  Y  V  C  I  I  I  S  D  I  V  F  Q  L  L  *  I  L  C  L  F  K  N  N  N  D  E  M  F  L  K  D  L  S  V  *  F  L  I  </first_frame>
            <second_frame>  R  N  S  Y  A  V  L  T  L  L  *  R  I  L  E  *  M  N  V  F  P  T  M  P  L  S  F  S  S  L  L  G  W  V  V  I  E  M  :  A  T  L  E  *  P  R  K  *  Q  E  M  C  A  Y  W  L  E  *  W  L  Q  I  C  I  S  L  R  L  R  I  L  C  L  S :   F  Q  C  G  D  A  M  M  S  S  V  S  V  Q  K  N  F  I  G  L  P  K  E  M  Q  S  T  T  L  :  N  F  G  R  K  F  H  R  M  S  P  T  V  F  F  L  L  M  *  E  I  G  Y  I  I  H  R  N  E  L  V  S  Y  *  P  M  G  I  L  M  F  L  R  S  R  H  S  Q  I  L  N  S :   F  W  N  L  W  S  C  A  I  D  L  Y  A  L  V  V  T  D  Q  L  Q  M  E  A  F  L  I  F  *  G  K  C  P  P  L  V  C  R  L  *  D  L  I  F  G  K  S  Q  I  D  T  L  M  F  *  M  L  *  Q  G  T  W  V  L  A  P  I  K  N  G  L  K  R  R  D  R  N  G  S  Y  L  N  *  V  A  S  V  H  F  L  D  L  I  S  L  K  L  M  K  S  L  M  F  W  I  P  F  M  S  S  P  N  F  P  P  T  V  S  V  L  I  *  F  R  W  P  R  H  P  L  M  C  L  L  L  S  F  C  S  V  N  V  M  *  K  V  H  *  G  L  F  R  C  L  K  S  L  L  I  S  S  L  H  L  L  L  L  L  G  C  S  P  *  I  G  T  E  T  V  S  M  G  N  K  K  L  *  L  G  I  L  I  P  V  R  M  L  A  D  Y  L  Q  L  G  N  C  T  R  L  K  R  N  L  *  R  W  Q  K  N  L  E  *  S  *  Q  C  S  M  A  E  V  G  L  *  E  G  E  G  V  P  P  T  L  L  F  Y  H  N  P  Q  T  Q  F  M  A  H  F  V  *  L  F  K  V  K  L  L  N  S  H  L  G  R  N  T  C  A  L  E  L  F  S  V  S  Q  Q  L  H  L  S  M  E  *  T  P  L  W  L  L  I  Q  S  G  V  P  S  W  M  R  C  L  L  L  L  R  K  S  I  G  L  *  C  S  R  I  H  D  L  L  N  T  S  A  L :   Q  P  Q  N  *  N  M  V  A  *  T  L  E  V  A  Q  P  K  G  S  Q  V  V  G  L  N  L  F  E  L  F  H  G  S  L  H  G  L  R  Q  G  F  I  S  Q  S  G  L  A  L  G  L  H  S  S  T  L  L  R  R  I  *  E  I  C  K  C  S  R  I  C  T  M  D  G  L  S  L  E  *  H  L  T  C  S  K  W  S  S  L  R  E  T  L  V  L  L  H  C  M  I  N  F  *  Y  P  K  I  C  G  R  L  E  S  D  *  D  P  N  T  K  K  Q  R  A  F  S  F  R :   L  L  G  T  R  I  Y  W  K  E  I  H  T  *  G  K  G  S  N  F  V  I  L  T  S  R  P  L  T  *  A  K  H  T  H  *  N  E  F  V  T  P  T  T  M  *  R  S  D  L  T  *  T  R  R  S  W  N  Q  A  N  Q  L  L  N  *  *  S  *  I  L  R  A  S  M  R  L  A  W  K  T  P  S  S  *  P  *  K  V  L  L  L  E  C  R  T  L  V  K  A  K  A  I  M  Y  V  *  *  *  V  I  L  S  F  N  F  Y  K  S  Y  V  C  S  R  I  I  M  M  R  C  F  *  R  I  *  V  C  D  F  *  F </second_frame>
            <third_frame>   E  I  P  T  P  C  *  H  C  F  E  E  Y  W  N  K  *  T  C  S  L  Q  C  P  S  H  S  V  L  F  L  D  G  W  *  S  R  W :   Q  P  *  S  N  P  G  S  D  K  R  C  V  L  I  G  *  N  D  G  C  K  S  V  F  L  S  D  *  G  S  Y  V  *   : A  F  N  V  A  M  Q  *  *  A  P  C  P  C  R  R  T  S  *  D  F  Q  K  R  C  K  A  L  H  * :   I  L  E  E  N  S  T  E  *  A  L  P  C  S  S  C  *  C  E  R  *  V  I  *  Y  T  G  T  S  S  S  V  T  S  Q  W  V  F  *  C  S  *  G  V  D  I  H  K  S  *  T   : V  S  G  T  S  G  A  V  L  *  I  S  M  R  L  W  *  Q  T  N  C  R  W  K  P  S  *  F  F  K  A  S  V  H  L  W  S  V  A  C  E  T  *  Y  S  A  R  V  R  *  T  H  *  C  S  R  C  Y  N  K  A  R  G  C  W  L  L  *  R  M  V  *  R  E  E  T  G  M  A  L  I  *  T  K  W  Q  A  S  T  F  W  T  *  S  P  *  N  *  *  S  R  *  C  F  G  Y  L  S  C  H  L  R  T  S  R  R  Q  F  R  C  L  Y  N  F  D  G  H  G  T  L  *  C  A  C  C  *  A  F  A  A  *  M  S  C  K  K  S  I  E  G  C  S  V  V  *  K  A  C  *  S  R  V  C  T  C  F  C  C  S  V  V  L  H  R  L  V  Q  K  P  Y  Q  W  E  T  R  S  Y  D  W  V  F  *  F  R  *  G  C  W  P  T  I  C  S  L  A  I  V  Q  G  S  R  G  T  C  K  G  G  K  R  I  W  S  K  A  N  N  V  P  W  P  R  W  D  C  R  K  G  R  G  S  H  P  P  C  Y  F  I  T  T  P  R  H  N  S  W  L  T  S  C  D  C  S  R  *  S  Y  *  T  V  I  W  G  G  T  P  V  L  *  N  S  S  A  F  H  S  S  Y  T  *  A  W  N  E  P  P  C  G  S  *  S  R  V  A  C  P  L  G  *  D  V  C  C  C  Y  E  R  V  S  V  F  S  V  P  G  S  T  I  C  *  I  L  P  P   : C  N  P  R  I  R  I  W  S  H  E  H  W  K  S  P  S  Q  K  E  A  K  W  W  D  *  I  S  S  S  Y  S  M  D  L  C  M  D  S  D  K  V  S  S  P  S  L  A  W  L  W  G  C  I  Q  A  R  Y  *  E  G  Y  K  K  S  A  N  A  Q  G  Y  V  Q  W  M  A  F  L  *  S  D  T  *  L  A  R  N  G  L  R  *  G  R  P  W  Y  C  C  I  V  *  *  T  F  S  I  R  R  S  V  A  A  W  R  A  I  E  I  Q  I  R  R  N  K  G  L  S  P  S   : G  C  W  A  Q  G  S  I  G  R  R  S  I  L  E  A  K  A  Q  T  S  *  F  L  H  H  D  P  *  R  K  P  S  I  H  I  E  T  N  S  *  P  Q  L  Q  C  E  G  Q  T  S  P  R  Q  G  D  H  G  I  K  Q  T  S  C  *  I  S  E  A  E  S  Y  E  R  V  C  A  W  L  G  R  H  P  H  L  D  H  E  R  Y  C  C  W  N  A  E  H  W  L  R  L  R  L  L  C  M  Y  N  N  K  *  Y  C  L  S  T  F  I  N  P  M  S  V  Q  E  *  *  *  *  D  V  S  E  G  F  E  C  V  I  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26654" stop="26768"/>
                    <exon start="27169" stop="27272"/>
                    <exon start="27367" stop="27454"/>
                    <exon start="27645" stop="27799"/>
                    <exon start="28304" stop="29302"/>
                    <exon start="29585" stop="29971"/>
                    <exon start="30060" stop="30356"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2142</number_coding_nucleotides>
                  <number_encoded_amino_acids>714</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRVRAEELHRTSKRDAKHYIEFWKKIPPNEPYRVLLADVRDRLYNTQERARQLLANGYSDVPEESTFTNLEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDVITRHVGVGSYKEWSEEKRQEWLLSELSGKRPLFGPDLPKTDEVADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECHVKSPLRVVPLFEKLADLESAPASVARLFSIDWYRNRINGKQEVMIGYSDSGKDAGRLSAAWQLYKAQEELVKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMNPPVAPNPEWRALLDEMSVVATKEYRSLVFQDPRFVEYFRLATPELEYGRMNIGSRPAKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIEKDIRNLQMLKDMYNGWPFFRVTLDLLEMVFAKGDPGIAALYDKLLVSEDLWPLGERLRSKYEETKGFLLQVAGHKDLLEGDPYLRQRLKLRDSYITTLNVSQAYTLKRIRDPNYNVKVRPHLDKEIMESSKPAAELVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35633" PGL_stop="31049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35633" e_stop="35252"/>
            <exon e_start="34100" e_stop="34051"/>
            <exon e_start="33970" e_stop="33895"/>
            <exon e_start="33805" e_stop="33710"/>
            <exon e_start="33571" e_stop="33491"/>
            <exon e_start="33392" e_stop="33301"/>
            <exon e_start="32877" e_stop="32782"/>
            <exon e_start="32300" e_stop="32232"/>
            <exon e_start="31843" e_stop="31660"/>
            <exon e_start="31328" e_stop="31049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.041" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35633" e_stop="35252" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34100" e_stop="34051" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.041">
            <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33970" e_stop="33895" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.994">
            <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33805" e_stop="33710" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33571" e_stop="33491" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33392" e_stop="33301" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32877" e_stop="32782" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.955" acc_prob="0.939">
            <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="32300" e_stop="32232" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.913" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32231" i_stop="31844" i_length="388"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31843" e_stop="31660" e_length="184"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.987">
            <gDNA_intron_boundary i_start="31659" i_stop="31329" i_length="331"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="31328" e_stop="31049" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35633" stop="35339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35632" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35626" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35626" stop="35388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35602" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35602" stop="35311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35570" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
              <exon start="33571" stop="33534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35570" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35569" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35568" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35567" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35566" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35562" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
              <exon start="33571" stop="33559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35562" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35562" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35560" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35557" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35556" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35554" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35554" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35549" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
              <exon start="33571" stop="33563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35548" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
              <exon start="33571" stop="33545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35540" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
              <exon start="33571" stop="33562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35538" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35413" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33799" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33725" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33725" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33725" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33725" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33560" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33495" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372627" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32267" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282688" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG : GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG : TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA : GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT : GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG : TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG : TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA : GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG : GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG : AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTTGTGCCACTTTCTATTATACAAGAGCAA</gDNA_template>
            <first_frame> I  F  I  F  P  C  L  *  D  Q  K  T  Q  P  H  H  S  K  L  N  K  N  G  S  S  K  L  L  L  P  P  N  Y  L  Y  S  H  T  H  I  S  R  F  F  K  Q  S  N  P  I  V  N  S  N  T  I  Q  A  E  I  C  E  I  V  *  W  G  G  C  *  W  G  L  C  C  *  P  A  H  Y  H  Y  *  A  *  E  V  L  G  *  G  C  G  S  S  H  L  *  *  F  Y  M  E  *  G  I  Y  G  S  H  E  E  V  Y  S  G  S  S  R  K  C  P  C  C  C  C  K   : G  R  D  I  R  I  S  *  L  K  Q  S  H  E  S  *  Q  :  F  G  S  *  L  D  Q  G  A  N  C  P  F  T  T  C  S  R  T  R  S  R  K  Y  S   : S  W  F  Y  C  I  S  K  M  A  A  S  T  N  T  T  R  A  G  E  M  G  Q  S  C  Q  G  C  N  W  G  Q   : *  R  D  V  E  G  N  K  T  S  S  R  G  S  K  G  Y  G  C  S  V  K  G  T  V  S  *   : V  K  E  *  I  A  A  P  H  S  W  D  W  W  C  W  C  D  F  S  L  Y  L  L  F  S  *  N  N  S  K  :  L  H  C  W  V  D  W  F  F  D  V  H  A  Y  A  W  K  Q  C  G  F  Y  A  V  R  W  T  Q  S  T  Y  *  :  G  S  C  W  A  A  K  A  I  G  S  C  Y  F  G  H  D  F  *  S  V  E  W  :  D  P  S  P  R  V  W  I  H  A  P  R  V  D  T  H  A  S  R  I  F  H  L  Q  D  C  N  F  C  P  S  N  R  G  R  C  I  D  H  W  K  *  V  T  S  L  A  L  V  F  M  I  F  H  Q  P  L  M  K  I  V   : E  E  K  K  V  Q  E  D  V  G  F  E  K  *  A  T  T  S  I  L  N  L  S  L  D  G  L  N  K  S  M  I  S  S  C  K  F  L  Y  I  L  D  R  A  L  S  F  V  D  N  L  K  F  L  I  P  L  K  V  Y  E  S  F  S  I  K  K  K  K  S  V  N  S  S  S  *  L  R  L  S  G  V  S  I  L  C  H  F  L  L  Y  K  S   </first_frame>
            <second_frame>  Y  L  F  S  L  V  Y  K  I  K  K  H  N  P  I  T  P  N  *  T  K  M  G  V  L  S  Y  C  Y  L  P  I  T  S  T  A  T  P  I  S  Q  D  S  S  N  N  P  T  P  L  S  I  P  T  Q  S  K  Q  K  S  V  K  L  S  S  G  V  A  A  N  G  D  Y  A  A  D  P  P  T  T  T  T  K  L  R  K  Y  W  G  E  D  V  D  P  L  T  S  D  D  F  I  W  N  K  E  F  M  G  R  M  K  K  Y  I  Q  D  P  Q  E  N  A  P  A  A  A  V  K  :  E  E  I  S  G  F  L  S  L  N  R  V  M  N  L  D  S :   L  E  V  D  L  T  K  E  L  T  A  P  S  Q  P  V  L  E  P  E  V  E  N  T  Q  :  A  G  F  T  A  S  Q  K  W  R  P  A  P  T  R  R  E  Q  E  K  W  G  K  A  A  K  A  A  T  G  G  S  :  D  V  M  L  R  E  I  K  R  P  Q  G  D  P  K  V  M  A  A  Q  S  R  E  Q  Y  L  K  :  L  K  N  K  L  Q  L  L  T  V  G  I  G  G  V  G  V  I  S  A  Y  I  S  Y  S  P  E  I  T  V  S :   Y  T  A  G  L  I  G  S  L  M  Y  M  R  M  L  G  N  S  V  D  S  M  Q  S  D  G  P  R  A  L  I  K :   G  A  V  G  Q  P  R  L  L  V  P  V  T  L  V  M  I  F  N  R  W  N  G :   I  L  V  P  E  Y  G  F  M  H  L  E  L  I  P  M  L  V  G  F  F  T  Y  K  I  A  T  F  V  Q  A  I  E  E  G  V  S  I  I  G  N  K  S  Q  A  *  L  *  F  L  *  F  S  I  N  L  *  *  K  *  *  :  R  R  K  K  F  R  K  T  L  D  S  K  N  E  L  Q  H  L  Y  S  I  Y  H  W  M  D  *  T  N  R  *  F  P  H  V  N  S  Y  I  Y  *  I  V  L  S  V  S  L  I  I  S  S  F  L  S  R  *  R  F  M  N  R  F  P  *  K  K  K  R  V  *  I  L  L  V  N  Y  D  Y  Q  E  F  P  F  C  A  T  F  Y  Y  T  R  A  </second_frame>
            <third_frame>   I  Y  F  P  L  S  I  R  S  K  N  T  T  P  S  L  Q  I  E  Q  K  W  E  F  *  A  T  A  T  S  Q  L  P  L  Q  P  H  P  Y  L  K  I  L  Q  T  I  Q  P  H  C  Q  F  Q  H  N  P  S  R  N  L  *  N  C  L  V  G  W  L  L  M  G  T  M  L  L  T  R  P  L  P  L  L  S  L  G  S  T  G  V  R  M  W  I  L  S  P  L  M  I  L  Y  G  I  R  N  L  W  V  A  *  R  S  I  F  R  I  L  K  K  M  P  L  L  L  L  *  R :   K  R  Y  Q  D  F  L  A  *  T  E  S  *  I  L  T   : V  W  K  L  T  *  P  R  S  *  L  P  L  H  N  L  F  *  N  Q  K  S  K  I  L  K :   L  V  L  L  H  L  K  N  G  G  Q  H  Q  H  D  A  S  R  R  N  G  A  K  L  P  R  L  Q  L  G  A  V :   T  *  C  *  G  K  *  N  V  L  K  G  I  Q  R  L  W  L  L  S  Q  G  N  S  I  L  S :   *  R  I  N  C  S  S  S  Q  L  G  L  V  V  L  V  *  F  Q  L  I  S  L  I  L  L  K  *  Q  *   : V  T  L  L  G  *  L  V  L  *  C  T  C  V  C  L  E  T  V  W  I  L  C  S  Q  M  D  P  E  H  L  L   : R  E  L  L  G  S  Q  G  Y  W  F  L  L  L  W  S  *  F  L  I  G  G  M   : G  S  *  S  Q  S  M  D  S  C  T  S  S  *  Y  P  C  *  S  D  F  S  L  T  R  L  Q  L  L  S  K  Q  S  R  K  V  Y  R  S  L  E  I  S  H  K  L  S  S  S  F  Y  D  F  P  S  T  S  N  E  N  S  R :   G  E  K  S  S  G  R  R  W  I  R  K  M  S  Y  N  I  Y  T  Q  F  I  T  G  W  I  E  Q  I  D  D  F  L  M  *  I  L  I  Y  T  R  S  C  S  Q  F  R  *  *  S  Q  V  S  Y  P  V  E  G  L  *  I  V  F  H  K  K  K  K  E  C  K  F  F  *  L  I  T  I  I  R  S  F  H  F  V  P  L  S  I  I  Q  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35575" stop="35252"/>
                    <exon start="34100" stop="34051"/>
                    <exon start="33970" stop="33895"/>
                    <exon start="33805" stop="33710"/>
                    <exon start="33571" stop="33491"/>
                    <exon start="33392" stop="33301"/>
                    <exon start="32877" stop="32782"/>
                    <exon start="32300" stop="32232"/>
                    <exon start="31843" stop="31705"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKMGVLSYCYLPITSTATPISQDSSNNPTPLSIPTQSKQKSVKLSSGVAANGDYAADPPTTTTKLRKYWGEDVDPLTSDDFIWNKEFMGRMKKYIQDPQENAPAAAVKEEISGFLSLNRVMNLDSLEVDLTKELTAPSQPVLEPEVENTQAGFTASQKWRPAPTRREQEKWGKAAKAATGGSDVMLREIKRPQGDPKVMAAQSREQYLKLKNKLQLLTVGIGGVGVISAYISYSPEITVSYTAGLIGSLMYMRMLGNSVDSMQSDGPRALIKGAVGQPRLLVPVTLVMIFNRWNGILVPEYGFMHLELIPMLVGFFTYKIATFVQAIEEGVSIIGNKSQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35633" e_stop="35252"/>
            <exon e_start="34100" e_stop="34051"/>
            <exon e_start="33970" e_stop="33895"/>
            <exon e_start="33805" e_stop="33491"/>
            <exon e_start="33392" e_stop="33301"/>
            <exon e_start="32877" e_stop="32782"/>
            <exon e_start="32300" e_stop="32232"/>
            <exon e_start="31843" e_stop="31660"/>
            <exon e_start="31328" e_stop="31049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.041" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="0.997"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35633" e_stop="35252" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34100" e_stop="34051" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.041">
            <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33970" e_stop="33895" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.994">
            <gDNA_intron_boundary i_start="33894" i_stop="33806" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="33805" e_stop="33491" e_length="315"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33392" e_stop="33301" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32877" e_stop="32782" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.939">
            <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32300" e_stop="32232" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.913" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32231" i_stop="31844" i_length="388"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31843" e_stop="31660" e_length="184"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.987">
            <gDNA_intron_boundary i_start="31659" i_stop="31329" i_length="331"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31328" e_stop="31049" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35633" stop="35339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35626" stop="35388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35602" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35602" stop="35311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35570" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35566" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35566" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35566" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35562" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35562" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35554" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35554" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33805" stop="33762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35538" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33560" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33495" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372627" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32267" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282688" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG : GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG : TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA : GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG : TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG : TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA : GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG : GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG : AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTTGTGCCACTTTCTATTATACAAGAGCAA</gDNA_template>
            <first_frame> I  F  I  F  P  C  L  *  D  Q  K  T  Q  P  H  H  S  K  L  N  K  N  G  S  S  K  L  L  L  P  P  N  Y  L  Y  S  H  T  H  I  S  R  F  F  K  Q  S  N  P  I  V  N  S  N  T  I  Q  A  E  I  C  E  I  V  *  W  G  G  C  *  W  G  L  C  C  *  P  A  H  Y  H  Y  *  A  *  E  V  L  G  *  G  C  G  S  S  H  L  *  *  F  Y  M  E  *  G  I  Y  G  S  H  E  E  V  Y  S  G  S  S  R  K  C  P  C  C  C  C  K   : G  R  D  I  R  I  S  *  L  K  Q  S  H  E  S  *  Q  :  F  G  S  *  L  D  Q  G  A  N  C  P  F  T  T  C  S  R  T  R  S  R  K  Y  S   : S  W  F  Y  C  I  S  K  M  A  A  S  T  N  T  T  R  A  G  E  M  G  Q  S  C  Q  G  C  N  W  G  Q  C  T  S  L  K  L  A  I  S  S  L  L  V  T  *  F  I  I  F  L  C  S  P  R  L  *  L  I  R  *  R  N  M  V  L  *  V  V  V  P  K  F  F  Y  H  P  G  R  D  V  E  G  N  K  T  S  S  R  G  S  K  G  Y  G  C  S  V  K  G  T  V  S  *   : V  K  E  *  I  A  A  P  H  S  W  D  W  W  C  W  C  D  F  S  L  Y  L  L  F  S  *  N  N  S  K  :  L  H  C  W  V  D  W  F  F  D  V  H  A  Y  A  W  K  Q  C  G  F  Y  A  V  R  W  T  Q  S  T  Y  *  :  G  S  C  W  A  A  K  A  I  G  S  C  Y  F  G  H  D  F  *  S  V  E  W  :  D  P  S  P  R  V  W  I  H  A  P  R  V  D  T  H  A  S  R  I  F  H  L  Q  D  C  N  F  C  P  S  N  R  G  R  C  I  D  H  W  K  *  V  T  S  L  A  L  V  F  M  I  F  H  Q  P  L  M  K  I  V   : E  E  K  K  V  Q  E  D  V  G  F  E  K  *  A  T  T  S  I  L  N  L  S  L  D  G  L  N  K  S  M  I  S  S  C  K  F  L  Y  I  L  D  R  A  L  S  F  V  D  N  L  K  F  L  I  P  L  K  V  Y  E  S  F  S  I  K  K  K  K  S  V  N  S  S  S  *  L  R  L  S  G  V  S  I  L  C  H  F  L  L  Y  K  S   </first_frame>
            <second_frame>  Y  L  F  S  L  V  Y  K  I  K  K  H  N  P  I  T  P  N  *  T  K  M  G  V  L  S  Y  C  Y  L  P  I  T  S  T  A  T  P  I  S  Q  D  S  S  N  N  P  T  P  L  S  I  P  T  Q  S  K  Q  K  S  V  K  L  S  S  G  V  A  A  N  G  D  Y  A  A  D  P  P  T  T  T  T  K  L  R  K  Y  W  G  E  D  V  D  P  L  T  S  D  D  F  I  W  N  K  E  F  M  G  R  M  K  K  Y  I  Q  D  P  Q  E  N  A  P  A  A  A  V  K  :  E  E  I  S  G  F  L  S  L  N  R  V  M  N  L  D  S :   L  E  V  D  L  T  K  E  L  T  A  P  S  Q  P  V  L  E  P  E  V  E  N  T  Q  :  A  G  F  T  A  S  Q  K  W  R  P  A  P  T  R  R  E  Q  E  K  W  G  K  A  A  K  A  A  T  G  G  S  V  R  H  *  S  L  Q  L  V  H  C  L  *  L  N  L  *  Y  F  F  A  H  L  V  S  N  *  *  D  R  E  I  W  F  S  K  L  *  F  R  N  F  F  I  I  Q  D  V  M  L  R  E  I  K  R  P  Q  G  D  P  K  V  M  A  A  Q  S  R  E  Q  Y  L  K  :  L  K  N  K  L  Q  L  L  T  V  G  I  G  G  V  G  V  I  S  A  Y  I  S  Y  S  P  E  I  T  V  S :   Y  T  A  G  L  I  G  S  L  M  Y  M  R  M  L  G  N  S  V  D  S  M  Q  S  D  G  P  R  A  L  I  K :   G  A  V  G  Q  P  R  L  L  V  P  V  T  L  V  M  I  F  N  R  W  N  G :   I  L  V  P  E  Y  G  F  M  H  L  E  L  I  P  M  L  V  G  F  F  T  Y  K  I  A  T  F  V  Q  A  I  E  E  G  V  S  I  I  G  N  K  S  Q  A  *  L  *  F  L  *  F  S  I  N  L  *  *  K  *  *  :  R  R  K  K  F  R  K  T  L  D  S  K  N  E  L  Q  H  L  Y  S  I  Y  H  W  M  D  *  T  N  R  *  F  P  H  V  N  S  Y  I  Y  *  I  V  L  S  V  S  L  I  I  S  S  F  L  S  R  *  R  F  M  N  R  F  P  *  K  K  K  R  V  *  I  L  L  V  N  Y  D  Y  Q  E  F  P  F  C  A  T  F  Y  Y  T  R  A  </second_frame>
            <third_frame>   I  Y  F  P  L  S  I  R  S  K  N  T  T  P  S  L  Q  I  E  Q  K  W  E  F  *  A  T  A  T  S  Q  L  P  L  Q  P  H  P  Y  L  K  I  L  Q  T  I  Q  P  H  C  Q  F  Q  H  N  P  S  R  N  L  *  N  C  L  V  G  W  L  L  M  G  T  M  L  L  T  R  P  L  P  L  L  S  L  G  S  T  G  V  R  M  W  I  L  S  P  L  M  I  L  Y  G  I  R  N  L  W  V  A  *  R  S  I  F  R  I  L  K  K  M  P  L  L  L  L  *  R :   K  R  Y  Q  D  F  L  A  *  T  E  S  *  I  L  T   : V  W  K  L  T  *  P  R  S  *  L  P  L  H  N  L  F  *  N  Q  K  S  K  I  L  K :   L  V  L  L  H  L  K  N  G  G  Q  H  Q  H  D  A  S  R  R  N  G  A  K  L  P  R  L  Q  L  G  A  V  Y  V  I  E  A  C  N  *  F  I  A  C  N  L  I  Y  N  I  S  L  L  T  S  S  L  T  N  K  I  E  K  Y  G  S  L  S  C  S  S  E  I  F  L  S  S  R  T  *  C  *  G  K  *  N  V  L  K  G  I  Q  R  L  W  L  L  S  Q  G  N  S  I  L  S :   *  R  I  N  C  S  S  S  Q  L  G  L  V  V  L  V  *  F  Q  L  I  S  L  I  L  L  K  *  Q  *   : V  T  L  L  G  *  L  V  L  *  C  T  C  V  C  L  E  T  V  W  I  L  C  S  Q  M  D  P  E  H  L  L   : R  E  L  L  G  S  Q  G  Y  W  F  L  L  L  W  S  *  F  L  I  G  G  M   : G  S  *  S  Q  S  M  D  S  C  T  S  S  *  Y  P  C  *  S  D  F  S  L  T  R  L  Q  L  L  S  K  Q  S  R  K  V  Y  R  S  L  E  I  S  H  K  L  S  S  S  F  Y  D  F  P  S  T  S  N  E  N  S  R :   G  E  K  S  S  G  R  R  W  I  R  K  M  S  Y  N  I  Y  T  Q  F  I  T  G  W  I  E  Q  I  D  D  F  L  M  *  I  L  I  Y  T  R  S  C  S  Q  F  R  *  *  S  Q  V  S  Y  P  V  E  G  L  *  I  V  F  H  K  K  K  K  E  C  K  F  F  *  L  I  T  I  I  R  S  F  H  F  V  P  L  S  I  I  Q  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35575" stop="35252"/>
                    <exon start="34100" stop="34051"/>
                    <exon start="33970" stop="33895"/>
                    <exon start="33805" stop="33698"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKMGVLSYCYLPITSTATPISQDSSNNPTPLSIPTQSKQKSVKLSSGVAANGDYAADPPTTTTKLRKYWGEDVDPLTSDDFIWNKEFMGRMKKYIQDPQENAPAAAVKEEISGFLSLNRVMNLDSLEVDLTKELTAPSQPVLEPEVENTQAGFTASQKWRPAPTRREQEKWGKAAKAATGGSVRH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33595" stop="33491"/>
                    <exon start="33392" stop="33301"/>
                    <exon start="32877" stop="32782"/>
                    <exon start="32300" stop="32232"/>
                    <exon start="31843" stop="31705"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRNFFIIQDVMLREIKRPQGDPKVMAAQSREQYLKLKNKLQLLTVGIGGVGVISAYISYSPEITVSYTAGLIGSLMYMRMLGNSVDSMQSDGPRALIKGAVGQPRLLVPVTLVMIFNRWNGILVPEYGFMHLELIPMLVGFFTYKIATFVQAIEEGVSIIGNKSQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="35633" e_stop="35252"/>
            <exon e_start="34100" e_stop="34051"/>
            <exon e_start="33970" e_stop="33895"/>
            <exon e_start="33771" e_stop="33710"/>
            <exon e_start="33571" e_stop="33491"/>
            <exon e_start="33392" e_stop="33301"/>
            <exon e_start="32877" e_stop="32782"/>
            <exon e_start="32300" e_stop="32232"/>
            <exon e_start="31843" e_stop="31660"/>
            <exon e_start="31328" e_stop="31049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.975"/>
          <exon-intron don_prob="0.997" acc_prob="0.041" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="35633" e_stop="35252" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="35251" i_stop="34101" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34100" e_stop="34051" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.041">
            <gDNA_intron_boundary i_start="34050" i_stop="33971" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33970" e_stop="33895" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33894" i_stop="33772" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33771" e_stop="33710" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="33709" i_stop="33572" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33571" e_stop="33491" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="33490" i_stop="33393" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33392" e_stop="33301" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33300" i_stop="32878" i_length="423"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32877" e_stop="32782" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.955" acc_prob="0.939">
            <gDNA_intron_boundary i_start="32781" i_stop="32301" i_length="481"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="32300" e_stop="32232" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.913" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32231" i_stop="31844" i_length="388"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31843" e_stop="31660" e_length="184"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.987">
            <gDNA_intron_boundary i_start="31659" i_stop="31329" i_length="331"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="31328" e_stop="31049" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35633" stop="35339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35626" stop="35388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35613" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
              <exon start="33771" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35602" stop="35311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35562" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35538" stop="35252"/>
              <exon start="34100" stop="34051"/>
              <exon start="33970" stop="33895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33725" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33725" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33725" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33725" stop="33710"/>
              <exon start="33571" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33560" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33495" stop="33491"/>
              <exon start="33392" stop="33301"/>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32877" stop="32782"/>
              <exon start="32300" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372627" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32267" stop="32232"/>
              <exon start="31843" stop="31660"/>
              <exon start="31328" stop="31156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282688" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG : GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG : TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA : CACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT : GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG : TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG : TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA : GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG : GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG : AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTTGTGCCACTTTCTATTATACAAGAGCAA</gDNA_template>
            <first_frame> I  F  I  F  P  C  L  *  D  Q  K  T  Q  P  H  H  S  K  L  N  K  N  G  S  S  K  L  L  L  P  P  N  Y  L  Y  S  H  T  H  I  S  R  F  F  K  Q  S  N  P  I  V  N  S  N  T  I  Q  A  E  I  C  E  I  V  *  W  G  G  C  *  W  G  L  C  C  *  P  A  H  Y  H  Y  *  A  *  E  V  L  G  *  G  C  G  S  S  H  L  *  *  F  Y  M  E  *  G  I  Y  G  S  H  E  E  V  Y  S  G  S  S  R  K  C  P  C  C  C  C  K   : G  R  D  I  R  I  S  *  L  K  Q  S  H  E  S  *  Q  :  F  G  S  *  L  D  Q  G  A  N  C  P  F  T  T  C  S  R  T  R  S  R  K  Y  S   : T  P  T  R  R  E  Q  E  K  W  G  K  A  A  K  A  A  T  G  G  S  :  D  V  M  L  R  E  I  K  R  P  Q  G  D  P  K  V  M  A  A  Q  S  R  E  Q  Y  L  K  :  L  K  N  K  L  Q  L  L  T  V  G  I  G  G  V  G  V  I  S  A  Y  I  S  Y  S  P  E  I  T  V  S :   Y  T  A  G  L  I  G  S  L  M  Y  M  R  M  L  G  N  S  V  D  S  M  Q  S  D  G  P  R  A  L  I  K :   G  A  V  G  Q  P  R  L  L  V  P  V  T  L  V  M  I  F  N  R  W  N  G :   I  L  V  P  E  Y  G  F  M  H  L  E  L  I  P  M  L  V  G  F  F  T  Y  K  I  A  T  F  V  Q  A  I  E  E  G  V  S  I  I  G  N  K  S  Q  A  *  L  *  F  L  *  F  S  I  N  L  *  *  K  *  *  :  R  R  K  K  F  R  K  T  L  D  S  K  N  E  L  Q  H  L  Y  S  I  Y  H  W  M  D  *  T  N  R  *  F  P  H  V  N  S  Y  I  Y  *  I  V  L  S  V  S  L  I  I  S  S  F  L  S  R  *  R  F  M  N  R  F  P  *  K  K  K  R  V  *  I  L  L  V  N  Y  D  Y  Q  E  F  P  F  C  A  T  F  Y  Y  T  R  A  </first_frame>
            <second_frame>  Y  L  F  S  L  V  Y  K  I  K  K  H  N  P  I  T  P  N  *  T  K  M  G  V  L  S  Y  C  Y  L  P  I  T  S  T  A  T  P  I  S  Q  D  S  S  N  N  P  T  P  L  S  I  P  T  Q  S  K  Q  K  S  V  K  L  S  S  G  V  A  A  N  G  D  Y  A  A  D  P  P  T  T  T  T  K  L  R  K  Y  W  G  E  D  V  D  P  L  T  S  D  D  F  I  W  N  K  E  F  M  G  R  M  K  K  Y  I  Q  D  P  Q  E  N  A  P  A  A  A  V  K  :  E  E  I  S  G  F  L  S  L  N  R  V  M  N  L  D  S :   L  E  V  D  L  T  K  E  L  T  A  P  S  Q  P  V  L  E  P  E  V  E  N  T  Q  :  H  Q  H  D  A  S  R  R  N  G  A  K  L  P  R  L  Q  L  G  A  V :   T  *  C  *  G  K  *  N  V  L  K  G  I  Q  R  L  W  L  L  S  Q  G  N  S  I  L  S :   *  R  I  N  C  S  S  S  Q  L  G  L  V  V  L  V  *  F  Q  L  I  S  L  I  L  L  K  *  Q  *   : V  T  L  L  G  *  L  V  L  *  C  T  C  V  C  L  E  T  V  W  I  L  C  S  Q  M  D  P  E  H  L  L   : R  E  L  L  G  S  Q  G  Y  W  F  L  L  L  W  S  *  F  L  I  G  G  M   : G  S  *  S  Q  S  M  D  S  C  T  S  S  *  Y  P  C  *  S  D  F  S  L  T  R  L  Q  L  L  S  K  Q  S  R  K  V  Y  R  S  L  E  I  S  H  K  L  S  S  S  F  Y  D  F  P  S  T  S  N  E  N  S  R :   G  E  K  S  S  G  R  R  W  I  R  K  M  S  Y  N  I  Y  T  Q  F  I  T  G  W  I  E  Q  I  D  D  F  L  M  *  I  L  I  Y  T  R  S  C  S  Q  F  R  *  *  S  Q  V  S  Y  P  V  E  G  L  *  I  V  F  H  K  K  K  K  E  C  K  F  F  *  L  I  T  I  I  R  S  F  H  F  V  P  L  S  I  I  Q  E  Q </second_frame>
            <third_frame>   I  Y  F  P  L  S  I  R  S  K  N  T  T  P  S  L  Q  I  E  Q  K  W  E  F  *  A  T  A  T  S  Q  L  P  L  Q  P  H  P  Y  L  K  I  L  Q  T  I  Q  P  H  C  Q  F  Q  H  N  P  S  R  N  L  *  N  C  L  V  G  W  L  L  M  G  T  M  L  L  T  R  P  L  P  L  L  S  L  G  S  T  G  V  R  M  W  I  L  S  P  L  M  I  L  Y  G  I  R  N  L  W  V  A  *  R  S  I  F  R  I  L  K  K  M  P  L  L  L  L  *  R :   K  R  Y  Q  D  F  L  A  *  T  E  S  *  I  L  T   : V  W  K  L  T  *  P  R  S  *  L  P  L  H  N  L  F  *  N  Q  K  S  K  I  L  N :   T  N  T  T  R  A  G  E  M  G  Q  S  C  Q  G  C  N  W  G  Q   : *  R  D  V  E  G  N  K  T  S  S  R  G  S  K  G  Y  G  C  S  V  K  G  T  V  S  *   : V  K  E  *  I  A  A  P  H  S  W  D  W  W  C  W  C  D  F  S  L  Y  L  L  F  S  *  N  N  S  K  :  L  H  C  W  V  D  W  F  F  D  V  H  A  Y  A  W  K  Q  C  G  F  Y  A  V  R  W  T  Q  S  T  Y  *  :  G  S  C  W  A  A  K  A  I  G  S  C  Y  F  G  H  D  F  *  S  V  E  W  :  D  P  S  P  R  V  W  I  H  A  P  R  V  D  T  H  A  S  R  I  F  H  L  Q  D  C  N  F  C  P  S  N  R  G  R  C  I  D  H  W  K  *  V  T  S  L  A  L  V  F  M  I  F  H  Q  P  L  M  K  I  V   : E  E  K  K  V  Q  E  D  V  G  F  E  K  *  A  T  T  S  I  L  N  L  S  L  D  G  L  N  K  S  M  I  S  S  C  K  F  L  Y  I  L  D  R  A  L  S  F  V  D  N  L  K  F  L  I  P  L  K  V  Y  E  S  F  S  I  K  K  K  K  S  V  N  S  S  S  *  L  R  L  S  G  V  S  I  L  C  H  F  L  L  Y  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33958" stop="33895"/>
                    <exon start="33771" stop="33710"/>
                    <exon start="33571" stop="33491"/>
                    <exon start="33392" stop="33301"/>
                    <exon start="32877" stop="32782"/>
                    <exon start="32300" stop="32232"/>
                    <exon start="31843" stop="31705"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDQGANCPFTTCSRTRSRKYSTPTRREQEKWGKAAKAATGGSDVMLREIKRPQGDPKVMAAQSREQYLKLKNKLQLLTVGIGGVGVISAYISYSPEITVSYTAGLIGSLMYMRMLGNSVDSMQSDGPRALIKGAVGQPRLLVPVTLVMIFNRWNGILVPEYGFMHLELIPMLVGFFTYKIATFVQAIEEGVSIIGNKSQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35575" stop="35252"/>
                    <exon start="34100" stop="34051"/>
                    <exon start="33970" stop="33895"/>
                    <exon start="33771" stop="33710"/>
                    <exon start="33571" stop="33565"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKMGVLSYCYLPITSTATPISQDSSNNPTPLSIPTQSKQKSVKLSSGVAANGDYAADPPTTTTKLRKYWGEDVDPLTSDDFIWNKEFMGRMKKYIQDPQENAPAAAVKEEISGFLSLNRVMNLDSLEVDLTKELTAPSQPVLEPEVENTQHQHDASRRNGAKLPRLQLGAVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="40254" PGL_stop="37470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40254" e_stop="40101"/>
            <exon e_start="38649" e_stop="38150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.935" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40254" e_stop="40101" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.935">
            <gDNA_intron_boundary i_start="40100" i_stop="38650" i_length="1451"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="38649" e_stop="38150" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40254" stop="40101"/>
              <exon start="38649" stop="38150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGACCCGAGATTTTATTGAACAATTTTTCTCCTTCTTTCCACTCAAAAACTCCATTGAAGCAGCCAAGAGCTTATACTACACAGTAATCAATATATTTGGAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAG : TGAATCGGAATATTGAGCTTCTTTTTGGATCCAAGAAATGAACTTAGGGAGACTGAAAAATGTGGTAGCTGCTGCAGCGATTGAAGGATTAGCCGAGGTAAGGGCCAAGATATTTGGTCATGTAATTAATCCAACTGGGCAGCGATCTGCTCACAAGGTTTTACGCAAGAAGCTGATCGGTGAAAAGGTCTCACAATGGTACCCACACGATATCATGAAAGATGACCCTCTTGTGATGGCTCGTCAAGAGCAAGAGCGTCTCAGCAAGCTTGAAATGTTGAAACGTCGTGGAAAGGGGCCACCTAAGAAGGGCCAGGGCAAACAGGCTAAGAAACGCAACAAATAGAGATGATAGTCTCACTGGTTTGAAATAAAGGGGTATCTAGGATTACTATTTGCAATTTGATTACTAACTTTTCTCATCAGCCACTTGCTTTCTAGTGAACATCATCTGCATACTCTTCTACAATTTTTTTCCATATAGTTTGGGCTGTTCGAGC</gDNA_template>
            <first_frame> K  T  R  D  F  I  E  Q  F  F  S  F  F  P  L  K  N  S  I  E  A  A  K  S  L  Y  Y  T  V  I  N  I  F  G  S  G  G  S  S  L  S  Q  S  K  A  A  V  C  S  H  Q   : V  N  R  N  I  E  L  L  F  G  S  K  K  *  T  *  G  D  *  K  M  W  *  L  L  Q  R  L  K  D  *  P  R  *  G  P  R  Y  L  V  M  *  L  I  Q  L  G  S  D  L  L  T  R  F  Y  A  R  S  *  S  V  K  R  S  H  N  G  T  H  T  I  S  *  K  M  T  L  L  *  W  L  V  K  S  K  S  V  S  A  S  L  K  C  *  N  V  V  E  R  G  H  L  R  R  A  R  A  N  R  L  R  N  A  T  N  R  D  D  S  L  T  G  L  K  *  R  G  I  *  D  Y  Y  L  Q  F  D  Y  *  L  F  S  S  A  T  C  F  L  V  N  I  I  C  I  L  F  Y  N  F  F  P  Y  S  L  G  C  S  S </first_frame>
            <second_frame>  R  P  E  I  L  L  N  N  F  S  P  S  F  H  S  K  T  P  L  K  Q  P  R  A  Y  T  T  Q  *  S  I  Y  L  E  V  A  D  P  V  S  H  K  A  R  Q  P  F  V  L  I  K  :  *  I  G  I  L  S  F  F  L  D  P  R  N  E  L  R  E  T  E  K  C  G  S  C  C  S  D  *  R  I  S  R  G  K  G  Q  D  I  W  S  C  N  *  S  N  W  A  A  I  C  S  Q  G  F  T  Q  E  A  D  R  *  K  G  L  T  M  V  P  T  R  Y  H  E  R  *  P  S  C  D  G  S  S  R  A  R  A  S  Q  Q  A  *  N  V  E  T  S  W  K  G  A  T  *  E  G  P  G  Q  T  G  *  E  T  Q  Q  I  E  M  I  V  S  L  V  *  N  K  G  V  S  R  I  T  I  C  N  L  I  T  N  F  S  H  Q  P  L  A  F  *  *  T  S  S  A  Y  S  S  T  I  F  F  H  I  V  W  A  V  R   </second_frame>
            <third_frame>   D  P  R  F  Y  *  T  I  F  L  L  L  S  T  Q  K  L  H  *  S  S  Q  E  L  I  L  H  S  N  Q  Y  I  W  K  W  R  I  Q  S  L  T  K  Q  G  S  R  L  F  S  S  S :   E  S  E  Y  *  A  S  F  W  I  Q  E  M  N  L  G  R  L  K  N  V  V  A  A  A  A  I  E  G  L  A  E  V  R  A  K  I  F  G  H  V  I  N  P  T  G  Q  R  S  A  H  K  V  L  R  K  K  L  I  G  E  K  V  S  Q  W  Y  P  H  D  I  M  K  D  D  P  L  V  M  A  R  Q  E  Q  E  R  L  S  K  L  E  M  L  K  R  R  G  K  G  P  P  K  K  G  Q  G  K  Q  A  K  K  R  N  K  *  R  *  *  S  H  W  F  E  I  K  G  Y  L  G  L  L  F  A  I  *  L  L  T  F  L  I  S  H  L  L  S  S  E  H  H  L  H  T  L  L  Q  F  F  S  I  *  F  G  L  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38633" stop="38304"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASFWIQEMNLGRLKNVVAAAAIEGLAEVRAKIFGHVINPTGQRSAHKVLRKKLIGEKVSQWYPHDIMKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGKQAKKRNK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40254" stop="40101"/>
                    <exon start="38649" stop="38609"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTRDFIEQFFSFFPLKNSIEAAKSLYYTVINIFGSGGSSLSQSKAAVCSHQVNRNIELLFGSKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40131" e_stop="40101"/>
            <exon e_start="38649" e_stop="38184"/>
            <exon e_start="37485" e_stop="37470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40131" e_stop="40101" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.935">
            <gDNA_intron_boundary i_start="40100" i_stop="38650" i_length="1451"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="38649" e_stop="38184" e_length="466"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38183" i_stop="37486" i_length="698"/>
          </intron>
          <exon e_serial="3" e_score="0.875">
            <gDNA_exon_boundary e_start="37485" e_stop="37470" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40131" stop="40101"/>
              <exon start="38649" stop="38184"/>
              <exon start="37485" stop="37470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309276" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGCAAGGCAGCCGTTTGTTCTCATCAAG : TGAATCGGAATATTGAGCTTCTTTTTGGATCCAAGAAATGAACTTAGGGAGACTGAAAAATGTGGTAGCTGCTGCAGCGATTGAAGGATTAGCCGAGGTAAGGGCCAAGATATTTGGTCATGTAATTAATCCAACTGGGCAGCGATCTGCTCACAAGGTTTTACGCAAGAAGCTGATCGGTGAAAAGGTCTCACAATGGTACCCACACGATATCATGAAAGATGACCCTCTTGTGATGGCTCGTCAAGAGCAAGAGCGTCTCAGCAAGCTTGAAATGTTGAAACGTCGTGGAAAGGGGCCACCTAAGAAGGGCCAGGGCAAACAGGCTAAGAAACGCAACAAATAGAGATGATAGTCTCACTGGTTTGAAATAAAGGGGTATCTAGGATTACTATTTGCAATTTGATTACTAACTTTTCTCATCAGCCACTTGCTTTCTAGTGAACATCATCTGCATACTCTTCTA : AAAAAAAAAAAATCAA</gDNA_template>
            <first_frame> Q  S  K  A  A  V  C  S  H  Q   : V  N  R  N  I  E  L  L  F  G  S  K  K  *  T  *  G  D  *  K  M  W  *  L  L  Q  R  L  K  D  *  P  R  *  G  P  R  Y  L  V  M  *  L  I  Q  L  G  S  D  L  L  T  R  F  Y  A  R  S  *  S  V  K  R  S  H  N  G  T  H  T  I  S  *  K  M  T  L  L  *  W  L  V  K  S  K  S  V  S  A  S  L  K  C  *  N  V  V  E  R  G  H  L  R  R  A  R  A  N  R  L  R  N  A  T  N  R  D  D  S  L  T  G  L  K  *  R  G  I  *  D  Y  Y  L  Q  F  D  Y  *  L  F  S  S  A  T  C  F  L  V  N  I  I  C  I  L  F  * :   K  K  K  N  Q </first_frame>
            <second_frame>  K  A  R  Q  P  F  V  L  I  K  :  *  I  G  I  L  S  F  F  L  D  P  R  N  E  L  R  E  T  E  K  C  G  S  C  C  S  D  *  R  I  S  R  G  K  G  Q  D  I  W  S  C  N  *  S  N  W  A  A  I  C  S  Q  G  F  T  Q  E  A  D  R  *  K  G  L  T  M  V  P  T  R  Y  H  E  R  *  P  S  C  D  G  S  S  R  A  R  A  S  Q  Q  A  *  N  V  E  T  S  W  K  G  A  T  *  E  G  P  G  Q  T  G  *  E  T  Q  Q  I  E  M  I  V  S  L  V  *  N  K  G  V  S  R  I  T  I  C  N  L  I  T  N  F  S  H  Q  P  L  A  F  *  *  T  S  S  A  Y  S  S   : K  K  K  K  I   </second_frame>
            <third_frame>   K  Q  G  S  R  L  F  S  S  S :   E  S  E  Y  *  A  S  F  W  I  Q  E  M  N  L  G  R  L  K  N  V  V  A  A  A  A  I  E  G  L  A  E  V  R  A  K  I  F  G  H  V  I  N  P  T  G  Q  R  S  A  H  K  V  L  R  K  K  L  I  G  E  K  V  S  Q  W  Y  P  H  D  I  M  K  D  D  P  L  V  M  A  R  Q  E  Q  E  R  L  S  K  L  E  M  L  K  R  R  G  K  G  P  P  K  K  G  Q  G  K  Q  A  K  K  R  N  K  *  R  *  *  S  H  W  F  E  I  K  G  Y  L  G  L  L  F  A  I  *  L  L  T  F  L  I  S  H  L  L  S  S  E  H  H  L  H  T  L  L  :  K  K  K  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38633" stop="38304"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASFWIQEMNLGRLKNVVAAAAIEGLAEVRAKIFGHVINPTGQRSAHKVLRKKLIGEKVSQWYPHDIMKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGKQAKKRNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40154" e_stop="40101"/>
            <exon e_start="39466" e_stop="38925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40154" e_stop="40101" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.854">
            <gDNA_intron_boundary i_start="40100" i_stop="39467" i_length="634"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="39466" e_stop="38925" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40154" stop="40101"/>
              <exon start="39466" stop="38925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAG : GCGATTTAGAAGTTTTTGGGATGATGGAATATACAATGGGAATGAGATTTTGTGATTGAGTCGGGGACTGATGGCGTTATTCAGGAAGCCTTTTCATGATTTTCCTTTTGAGAATTTAGAAGCATGTCTAAGGTTTCAAGCTGAGGTTGTGTCGAGCTTTCTGTTCTGTTTTCCTTTTTAGAGTCTTCCGGTCCATCGTTTGTTTCTATAGTTGGAGAACTTTGTATTCTGGTCATTCCCAGCATACTAATGGAAAAGCATGACCAACGATATCTTGTTGTTCCTGTAAAGCGGAGAATATGCATCTAATTCTTTGTATTTATCTGAGAGCAACTTGTGATATTTTTATCAGAGAAATAGAATGAATGTGATATAGAGGGGACTAATGTGACAATCTGTGTCGACGTTTTGAGTAGGTAATACACAATCTGTGTTGGTTACTTTGATTCTTTTTTTTCTTAAACGGAAGTTTTGTTTGAATTTTGATCATTGTTTGGACCAAATATAAATAGGATGTTATCAATCCGAAATGTGATATAAAC</gDNA_template>
            <first_frame> E  V  A  D  P  V  S  H  K  A  R  Q  P  F  V  L  I  K  :  A  I  *  K  F  L  G  *  W  N  I  Q  W  E  *  D  F  V  I  E  S  G  T  D  G  V  I  Q  E  A  F  S  *  F  S  F  *  E  F  R  S  M  S  K  V  S  S  *  G  C  V  E  L  S  V  L  F  S  F  L  E  S  S  G  P  S  F  V  S  I  V  G  E  L  C  I  L  V  I  P  S  I  L  M  E  K  H  D  Q  R  Y  L  V  V  P  V  K  R  R  I  C  I  *  F  F  V  F  I  *  E  Q  L  V  I  F  L  S  E  K  *  N  E  C  D  I  E  G  T  N  V  T  I  C  V  D  V  L  S  R  *  Y  T  I  C  V  G  Y  F  D  S  F  F  S  *  T  E  V  L  F  E  F  *  S  L  F  G  P  N  I  N  R  M  L  S  I  R  N  V  I  *   </first_frame>
            <second_frame>  K  W  R  I  Q  S  L  T  K  Q  G  S  R  L  F  S  S  R :   R  F  R  S  F  W  D  D  G  I  Y  N  G  N  E  I  L  *  L  S  R  G  L  M  A  L  F  R  K  P  F  H  D  F  P  F  E  N  L  E  A  C  L  R  F  Q  A  E  V  V  S  S  F  L  F  C  F  P  F  *  S  L  P  V  H  R  L  F  L  *  L  E  N  F  V  F  W  S  F  P  A  Y  *  W  K  S  M  T  N  D  I  L  L  F  L  *  S  G  E  Y  A  S  N  S  L  Y  L  S  E  S  N  L  *  Y  F  Y  Q  R  N  R  M  N  V  I  *  R  G  L  M  *  Q  S  V  S  T  F  *  V  G  N  T  Q  S  V  L  V  T  L  I  L  F  F  L  K  R  K  F  C  L  N  F  D  H  C  L  D  Q  I  *  I  G  C  Y  Q  S  E  M  *  Y  K  </second_frame>
            <third_frame>   S  G  G  S  S  L  S  Q  S  K  A  A  V  C  S  H  Q   : G  D  L  E  V  F  G  M  M  E  Y  T  M  G  M  R  F  C  D  *  V  G  D  *  W  R  Y  S  G  S  L  F  M  I  F  L  L  R  I  *  K  H  V  *  G  F  K  L  R  L  C  R  A  F  C  S  V  F  L  F  R  V  F  R  S  I  V  C  F  Y  S  W  R  T  L  Y  S  G  H  S  Q  H  T  N  G  K  A  *  P  T  I  S  C  C  S  C  K  A  E  N  M  H  L  I  L  C  I  Y  L  R  A  T  C  D  I  F  I  R  E  I  E  *  M  *  Y  R  G  D  *  C  D  N  L  C  R  R  F  E  *  V  I  H  N  L  C  W  L  L  *  F  F  F  F  L  N  G  S  F  V  *  I  L  I  I  V  W  T  K  Y  K  *  D  V  I  N  P  K  C  D  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0096B05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="42009" PGL_stop="41336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42009" e_stop="41336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="42009" e_stop="41336" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42009" stop="41336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42008" stop="41454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42008" stop="41505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42008" stop="41529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAATTGCAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACATTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATAGAAAGGAAATTAACTATTAAGGCCAATTTTTGTTAATGAAAATGAAATATGCAACCATTTCCATTTGAAGTAAATTTTGCTTTTTAGTTTTACAGGTGAAAGCCAAATGAAACTGATCCCAGATGCTGTTCATGACGCGAGTTGCTGCCAAATTTGTAAGTGTTTTTTT</gDNA_template>
            <first_frame> F  N  C  S  Y  N  F  Q  V  S  Y  F  S  F  *  S  N  L  A  *  S  S  Q  G  C  F  F  Q  F  S  R  L  A  T  S  S  I  L  R  L  T  F  F  F  *  M  L  S  D  P  C  L  S  I  L  G  E  L  A  Q  I  R  G  K  H  S  Y  I  P  Y  C  H  L  Y  M  *  K  D  I  F  L  D  V  W  L  *  *  I  Y  F  S  K  F  F  C  C  N  F  C  I  E  I  N  L  L  L  G  V  G  I  G  S  D  Q  A  Y  A  T  H  T  L  S  L  C  *  V  G  L  L  T  K  G  R  *  N  R  Y  W  L  S  I  R  T  A  S  P  N  F  Y  C  F  R  Y  I  G  S  L  T  V  P  Q  D  V  I  W  N  I  N  R  K  E  I  N  Y  *  G  Q  F  L  L  M  K  M  K  Y  A  T  I  S  I  *  S  K  F  C  F  L  V  L  Q  V  K  A  K  *  N  *  S  Q  M  L  F  M  T  R  V  A  A  K  F  V  S  V  F   </first_frame>
            <second_frame>  L  I  A  V  T  I  F  K  S  A  T  L  V  F  D  Q  I  W  L  N  L  L  K  V  V  S  S  N  F  P  G  *  L  L  L  Q  F  S  V  *  H  F  F  F  E  C  C  L  I  R  V  Y  L  F  W  E  S  *  L  R  Y  E  G  N  I  P  I  F  L  T  A  I  F  I  C  K  R  I  S  F  L  T  F  G  Y  D  K  Y  I  S  L  S  S  F  V  A  I  F  A  L  K  S  I  F  S  *  E  L  E  L  E  V  T  K  H  M  R  L  I  P  Y  R  S  A  K  *  G  S  *  Q  K  E  G  K  I  D  I  G  C  Q  L  E  Q  Q  V  Q  T  F  I  V  L  G  I  L  A  P  *  Q  Y  H  R  M  L  S  G  I  L  I  E  R  K  L  T  I  K  A  N  F  C  *  *  K  *  N  M  Q  P  F  P  F  E  V  N  F  A  F  *  F  Y  R  *  K  P  N  E  T  D  P  R  C  C  S  *  R  E  L  L  P  N  L  *  V  F  F  </second_frame>
            <third_frame>   *  L  Q  L  Q  F  S  S  Q  L  L  *  F  L  I  K  S  G  L  I  F  S  R  L  F  L  P  I  F  Q  V  S  Y  F  F  N  S  P  S  N  I  F  F  L  N  V  V  *  S  V  S  I  Y  F  G  R  A  S  S  D  T  R  E  T  F  L  Y  S  L  L  P  S  L  Y  V  K  G  Y  L  S  *  R  L  V  M  I  N  I  F  L  *  V  L  L  L  Q  F  L  H  *  N  Q  S  S  L  R  S  W  N  W  K  *  P  S  I  C  D  S  Y  P  I  A  L  L  S  R  A  L  N  K  R  K  V  K  S  I  L  V  V  N  *  N  S  K  S  K  L  L  L  F  *  V  Y  W  L  P  D  S  T  T  G  C  Y  L  E  Y  *  *  K  G  N  *  L  L  R  P  I  F  V  N  E  N  E  I  C  N  H  F  H  L  K  *  I  L  L  F  S  F  T  G  E  S  Q  M  K  L  I  P  D  A  V  H  D  A  S  C  C  Q  I  C  K  C  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0096B05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="55777" PGL_stop="56840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55777" e_stop="56073"/>
            <exon e_start="56153" e_stop="56840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.878" acc_prob="0.527" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="55777" e_stop="56073" e_length="297"/>
          </exon>
          <intron i_serial="1" don_prob="0.878" acc_prob="0.527">
            <gDNA_intron_boundary i_start="56074" i_stop="56152" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56153" e_stop="56840" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55777" stop="56073"/>
              <exon start="56153" stop="56641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261896" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56273" stop="56840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCAGATGGAGATTTTGGTAAAGGAGGGGGAGCAGGAAGCTTTGAATGTGTTACGCGTGAGTTTTCTAACTTTTCTTTTCGTACTGTTTGCTTTCTGGTACTTCGTTTAACATCATCTTTGCGTTTCACTGAGGTGACTGCATCCTGGTAATGAGCTTGTTCAGAAGCTGTCAGTGCCATCATTTCCCCTCCATTGTTCAATTTTTCCGCTGATATTGGTGGAAAATAACTAAGTGAAGAATCGACAGAGGGCTTTTGTTCTGCCATCTTTTTAAGAACATCTTGATTCTCATCCT : AGTTTTCTCTGCCAGAGGAGCTGCTAAATCCGCTTCACCTGCAATGTTCTGATAATCAAATAATTCTTGAAAGCGATCATTTGTGTCCTCATGCGCATGAACTGTGACAAATCCGGCCACTGACTCAGATTTGGACTGCTGCAATAAGTTAAAACCATAAGTGATAAAGAAAATGTGGGAGAGGAAGGTAGCACAACATAAGCGGCTGCAGTAGAGCAACAGAAGTGACGGGAAGAAAGACAGTGGAAATTGATACCTCATTCTCTGATCCACTGCAAGAAGCGGTAGATGATGATCCAGTCTGTGTTCTACTGGCAGGAGACATTGGTACTCTGGTTCTAGCACTCATTCCAGGTATAGGATTCATCAGACAAAACGAACTTTTCAAGCAAAAACGAGGCAATAATCCACAAACTTTGGTAGGTAGATTTCCATCATAACAACTATCATCATCACTTTCTTCTTCATAGTTATCATGGAATTGGGAATAACGAAGTGCAAAACTAGGTCCATAGCGCAGCTGAGGCCTCTTATCCCCATTTAGTACTTTCTTGAGTTGTCTTGGTTGCTCCTGAACAGCTGGTTGCTTCCTGGGAGCATACTGAGGCGTTTCTAAAGACTTTTCTGAAGCCATGGCCTTGGCTGCTGGCAGAAACCGATCAATCATGAAATCTCTAGCTTGTGGATC</gDNA_template>
            <first_frame> N  Q  M  E  I  L  V  K  E  G  E  Q  E  A  L  N  V  L  R  V  S  F  L  T  F  L  F  V  L  F  A  F  W  Y  F  V  *  H  H  L  C  V  S  L  R  *  L  H  P  G  N  E  L  V  Q  K  L  S  V  P  S  F  P  L  H  C  S  I  F  P  L  I  L  V  E  N  N  *  V  K  N  R  Q  R  A  F  V  L  P  S  F  *  E  H  L  D  S  H  P  :  S  F  L  C  Q  R  S  C  *  I  R  F  T  C  N  V  L  I  I  K  *  F  L  K  A  I  I  C  V  L  M  R  M  N  C  D  K  S  G  H  *  L  R  F  G  L  L  Q  *  V  K  T  I  S  D  K  E  N  V  G  E  E  G  S  T  T  *  A  A  A  V  E  Q  Q  K  *  R  E  E  R  Q  W  K  L  I  P  H  S  L  I  H  C  K  K  R  *  M  M  I  Q  S  V  F  Y  W  Q  E  T  L  V  L  W  F  *  H  S  F  Q  V  *  D  S  S  D  K  T  N  F  S  S  K  N  E  A  I  I  H  K  L  W  *  V  D  F  H  H  N  N  Y  H  H  H  F  L  L  H  S  Y  H  G  I  G  N  N  E  V  Q  N  *  V  H  S  A  A  E  A  S  Y  P  H  L  V  L  S  *  V  V  L  V  A  P  E  Q  L  V  A  S  W  E  H  T  E  A  F  L  K  T  F  L  K  P  W  P  W  L  L  A  E  T  D  Q  S  *  N  L  *  L  V  D  </first_frame>
            <second_frame>  I  R  W  R  F  W  *  R  R  G  S  R  K  L  *  M  C  Y  A  *  V  F  *  L  F  F  S  Y  C  L  L  S  G  T  S  F  N  I  I  F  A  F  H  *  G  D  C  I  L  V  M  S  L  F  R  S  C  Q  C  H  H  F  P  S  I  V  Q  F  F  R  *  Y  W  W  K  I  T  K  *  R  I  D  R  G  L  L  F  C  H  L  F  K  N  I  L  I  L  I  L :   V  F  S  A  R  G  A  A  K  S  A  S  P  A  M  F  *  *  S  N  N  S  *  K  R  S  F  V  S  S  C  A  *  T  V  T  N  P  A  T  D  S  D  L  D  C  C  N  K  L  K  P  *  V  I  K  K  M  W  E  R  K  V  A  Q  H  K  R  L  Q  *  S  N  R  S  D  G  K  K  D  S  G  N  *  Y  L  I  L  *  S  T  A  R  S  G  R  *  *  S  S  L  C  S  T  G  R  R  H  W  Y  S  G  S  S  T  H  S  R  Y  R  I  H  Q  T  K  R  T  F  Q  A  K  T  R  Q  *  S  T  N  F  G  R  *  I  S  I  I  T  T  I  I  I  T  F  F  F  I  V  I  M  E  L  G  I  T  K  C  K  T  R  S  I  A  Q  L  R  P  L  I  P  I  *  Y  F  L  E  L  S  W  L  L  L  N  S  W  L  L  P  G  S  I  L  R  R  F  *  R  L  F  *  S  H  G  L  G  C  W  Q  K  P  I  N  H  E  I  S  S  L  W  I </second_frame>
            <third_frame>   S  D  G  D  F  G  K  G  G  G  A  G  S  F  E  C  V  T  R  E  F  S  N  F  S  F  R  T  V  C  F  L  V  L  R  L  T  S  S  L  R  F  T  E  V  T  A  S  W  *  *  A  C  S  E  A  V  S  A  I  I  S  P  P  L  F  N  F  S  A  D  I  G  G  K  *  L  S  E  E  S  T  E  G  F  C  S  A  I  F  L  R  T  S  *  F  S  S   : *  F  S  L  P  E  E  L  L  N  P  L  H  L  Q  C  S  D  N  Q  I  I  L  E  S  D  H  L  C  P  H  A  H  E  L  *  Q  I  R  P  L  T  Q  I  W  T  A  A  I  S  *  N  H  K  *  *  R  K  C  G  R  G  R  *  H  N  I  S  G  C  S  R  A  T  E  V  T  G  R  K  T  V  E  I  D  T  S  F  S  D  P  L  Q  E  A  V  D  D  D  P  V  C  V  L  L  A  G  D  I  G  T  L  V  L  A  L  I  P  G  I  G  F  I  R  Q  N  E  L  F  K  Q  K  R  G  N  N  P  Q  T  L  V  G  R  F  P  S  *  Q  L  S  S  S  L  S  S  S  *  L  S  W  N  W  E  *  R  S  A  K  L  G  P  *  R  S  *  G  L  L  S  P  F  S  T  F  L  S  C  L  G  C  S  *  T  A  G  C  F  L  G  A  Y  *  G  V  S  K  D  F  S  E  A  M  A  L  A  A  G  R  N  R  S  I  M  K  S  L  A  C  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56344" stop="56592"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNISGCSRATEVTGRKTVEIDTSFSDPLQEAVDDDPVCVLLAGDIGTLVLALIPGIGFIRQNELFKQKRGNNPQTLVGRFPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="56641" PGL_stop="56273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56641" e_stop="56273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="56641" e_stop="56273" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56641" stop="56273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260000" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCCCAATTCCATGATAACTATGAAGAAGAAAGTGATGATGATAGTTGTTATGATGGAAATCTACCTACCAAAGTTTGTGGATTATTGCCTCGTTTTTGCTTGAAAAGTTCGTTTTGTCTGATGAATCCTATACCTGGAATGAGTGCTAGAACCAGAGTACCAATGTCTCCTGCCAGTAGAACACAGACTGGATCATCATCTACCGCTTCTTGCAGTGGATCAGAGAATGAGGTATCAATTTCCACTGTCTTTCTTCCCGTCACTTCTGTTGCTCTACTGCAGCCGCTTATGTTGTGCTACCTTCCTCTCCCACATTTTCTTTATCACTTATGGTTTTAACTTATTGCAGCAGTCCAAATCTGAGTCA</gDNA_template>
            <first_frame> I  P  N  S  M  I  T  M  K  K  K  V  M  M  I  V  V  M  M  E  I  Y  L  P  K  F  V  D  Y  C  L  V  F  A  *  K  V  R  F  V  *  *  I  L  Y  L  E  *  V  L  E  P  E  Y  Q  C  L  L  P  V  E  H  R  L  D  H  H  L  P  L  L  A  V  D  Q  R  M  R  Y  Q  F  P  L  S  F  F  P  S  L  L  L  L  Y  C  S  R  L  C  C  A  T  F  L  S  H  I  F  F  I  T  Y  G  F  N  L  L  Q  Q  S  K  S  E  S </first_frame>
            <second_frame>  F  P  I  P  *  *  L  *  R  R  K  *  *  *  *  L  L  *  W  K  S  T  Y  Q  S  L  W  I  I  A  S  F  L  L  E  K  F  V  L  S  D  E  S  Y  T  W  N  E  C  *  N  Q  S  T  N  V  S  C  Q  *  N  T  D  W  I  I  I  Y  R  F  L  Q  W  I  R  E  *  G  I  N  F  H  C  L  S  S  R  H  F  C  C  S  T  A  A  A  Y  V  V  L  P  S  S  P  T  F  S  L  S  L  M  V  L  T  Y  C  S  S  P  N  L  S   </second_frame>
            <third_frame>   S  Q  F  H  D  N  Y  E  E  E  S  D  D  D  S  C  Y  D  G  N  L  P  T  K  V  C  G  L  L  P  R  F  C  L  K  S  S  F  C  L  M  N  P  I  P  G  M  S  A  R  T  R  V  P  M  S  P  A  S  R  T  Q  T  G  S  S  S  T  A  S  C  S  G  S  E  N  E  V  S  I  S  T  V  F  L  P  V  T  S  V  A  L  L  Q  P  L  M  L  C  Y  L  P  L  P  H  F  L  Y  H  L  W  F  *  L  I  A  A  V  Q  I  *  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56639" stop="56301"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQFHDNYEEESDDDSCYDGNLPTKVCGLLPRFCLKSSFCLMNPIPGMSARTRVPMSPASRTQTGSSSTASCSGSENEVSISTVFLPVTSVALLQPLMLCYLPLPHFLYHLWF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="72843" PGL_stop="75343"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72843" e_stop="72918"/>
            <exon e_start="73101" e_stop="73360"/>
            <exon e_start="73586" e_stop="73702"/>
            <exon e_start="73860" e_stop="73949"/>
            <exon e_start="75269" e_stop="75343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.997" e_score="0.868"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.953"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.747" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.868">
            <gDNA_exon_boundary e_start="72843" e_stop="72918" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.997">
            <gDNA_intron_boundary i_start="72919" i_stop="73100" i_length="182"/>
          </intron>
          <exon e_serial="2" e_score="0.953">
            <gDNA_exon_boundary e_start="73101" e_stop="73360" e_length="260"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73361" i_stop="73585" i_length="225"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73586" e_stop="73702" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73703" i_stop="73859" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73860" e_stop="73949" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.747">
            <gDNA_intron_boundary i_start="73950" i_stop="75268" i_length="1319"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75269" e_stop="75343" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72843" stop="72918"/>
              <exon start="73101" stop="73336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73205" stop="73360"/>
              <exon start="73586" stop="73702"/>
              <exon start="73860" stop="73949"/>
              <exon start="75269" stop="75343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCTCATGCCGTTCTCGAGCAATACTGTTCAAAGTATTAGCGGATACTGTAGGTGTTGAAAGTCAACTTGTTGTG : GGGTTGCCTGCTGATGGAGCTTCTGAATGTGTAGACTCATCTAAACATATGTCTGTTATAGTTGTGTTAAATTCTGTGGAACTGCTTGTCGACCTTATGCGTTTTCCTGGTCAACTTATTCCTCGATCAGCAAAGGCTATTTTCATGACCCACATATCTGCTGCTGGAGAGAGTGATTCTGCAGAAAATGATTCCTGTGATTCACCATTGGAGCCTAATAGTCCTCTTTATGGGTTTTCAGAGAGAATTGATCCTGAGAG : TTCCGAGAAAGATGATGCCCTTCAATGCCAGAGGAGACTAGAAGCATCTTCAAATGCCGCAGGACCTTCATTGAGGAATATGATGTTGCGGTCTACTTCCATTGACAGAAAATTGAG : TTTCTCGCACAGCGAACCCAATATTGCTACTGCAGCTTGGAGAAGGAGCCGAAGGAAAGTTATTACTGAACAAAGGACTGCTAGTTCAAG : TCCGGAGCATCCTTCATTTCGAGCACGTGCCAGGTCTATGCTTAGTGGTGATACCAAAACATTCAAAGATTATTC</gDNA_template>
            <first_frame> W  L  M  P  F  S  S  N  T  V  Q  S  I  S  G  Y  C  R  C  *  K  S  T  C  C   : G  V  A  C  *  W  S  F  *  M  C  R  L  I  *  T  Y  V  C  Y  S  C  V  K  F  C  G  T  A  C  R  P  Y  A  F  S  W  S  T  Y  S  S  I  S  K  G  Y  F  H  D  P  H  I  C  C  W  R  E  *  F  C  R  K  *  F  L  *  F  T  I  G  A  *  *  S  S  L  W  V  F  R  E  N  *  S  *  E  :  F  R  E  R  *  C  P  S  M  P  E  E  T  R  S  I  F  K  C  R  R  T  F  I  E  E  Y  D  V  A  V  Y  F  H  *  Q  K  I  E  :  F  L  A  Q  R  T  Q  Y  C  Y  C  S  L  E  K  E  P  K  E  S  Y  Y  *  T  K  D  C  *  F  K  :  S  G  A  S  F  I  S  S  T  C  Q  V  Y  A  *  W  *  Y  Q  N  I  Q  R  L  F </first_frame>
            <second_frame>  G  S  C  R  S  R  A  I  L  F  K  V  L  A  D  T  V  G  V  E  S  Q  L  V  V  :  G  L  P  A  D  G  A  S  E  C  V  D  S  S  K  H  M  S  V  I  V  V  L  N  S  V  E  L  L  V  D  L  M  R  F  P  G  Q  L  I  P  R  S  A  K  A  I  F  M  T  H  I  S  A  A  G  E  S  D  S  A  E  N  D  S  C  D  S  P  L  E  P  N  S  P  L  Y  G  F  S  E  R  I  D  P  E  S :   S  E  K  D  D  A  L  Q  C  Q  R  R  L  E  A  S  S  N  A  A  G  P  S  L  R  N  M  M  L  R  S  T  S  I  D  R  K  L  S :   F  S  H  S  E  P  N  I  A  T  A  A  W  R  R  S  R  R  K  V  I  T  E  Q  R  T  A  S  S  S :   P  E  H  P  S  F  R  A  R  A  R  S  M  L  S  G  D  T  K  T  F  K  D  Y   </second_frame>
            <third_frame>   A  H  A  V  L  E  Q  Y  C  S  K  Y  *  R  I  L  *  V  L  K  V  N  L  L  W :   G  C  L  L  M  E  L  L  N  V  *  T  H  L  N  I  C  L  L  *  L  C  *  I  L  W  N  C  L  S  T  L  C  V  F  L  V  N  L  F  L  D  Q  Q  R  L  F  S  *  P  T  Y  L  L  L  E  R  V  I  L  Q  K  M  I  P  V  I  H  H  W  S  L  I  V  L  F  M  G  F  Q  R  E  L  I  L  R   : V  P  R  K  M  M  P  F  N  A  R  G  D  *  K  H  L  Q  M  P  Q  D  L  H  *  G  I  *  C  C  G  L  L  P  L  T  E  N  *   : V  S  R  T  A  N  P  I  L  L  L  Q  L  G  E  G  A  E  G  K  L  L  L  N  K  G  L  L  V  Q   : V  R  S  I  L  H  F  E  H  V  P  G  L  C  L  V  V  I  P  K  H  S  K  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72844" stop="72918"/>
                    <exon start="73101" stop="73360"/>
                    <exon start="73586" stop="73702"/>
                    <exon start="73860" stop="73949"/>
                    <exon start="75269" stop="75341"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSCRSRAILFKVLADTVGVESQLVVGLPADGASECVDSSKHMSVIVVLNSVELLVDLMRFPGQLIPRSAKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERIDPESSEKDDALQCQRRLEASSNAAGPSLRNMMLRSTSIDRKLSFSHSEPNIATAAWRRSRRKVITEQRTASSSPEHPSFRARARSMLSGDTKTFKDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="103695" PGL_stop="97921"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103695" e_stop="103624"/>
            <exon e_start="103114" e_stop="103044"/>
            <exon e_start="102948" e_stop="102872"/>
            <exon e_start="102412" e_stop="102348"/>
            <exon e_start="101663" e_stop="101617"/>
            <exon e_start="101271" e_stop="101196"/>
            <exon e_start="100857" e_stop="100790"/>
            <exon e_start="100092" e_stop="100023"/>
            <exon e_start="99788" e_stop="99703"/>
            <exon e_start="98829" e_stop="98767"/>
            <exon e_start="98402" e_stop="98337"/>
            <exon e_start="98252" e_stop="97921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.587" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.730" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103695" e_stop="103624" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.980">
            <gDNA_intron_boundary i_start="103623" i_stop="103115" i_length="509"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103114" e_stop="103044" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.758" acc_prob="0.820">
            <gDNA_intron_boundary i_start="103043" i_stop="102949" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102948" e_stop="102872" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102871" i_stop="102413" i_length="459"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102412" e_stop="102348" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.951">
            <gDNA_intron_boundary i_start="102347" i_stop="101664" i_length="684"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101663" e_stop="101617" e_length="47"/>
          </exon>
          <intron i_serial="5" don_prob="0.587" acc_prob="0.966">
            <gDNA_intron_boundary i_start="101616" i_stop="101272" i_length="345"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101271" e_stop="101196" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.911" acc_prob="0.999">
            <gDNA_intron_boundary i_start="101195" i_stop="100858" i_length="338"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="100857" e_stop="100790" e_length="68"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="100789" i_stop="100093" i_length="697"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="100092" e_stop="100023" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="100022" i_stop="99789" i_length="234"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="99788" e_stop="99703" e_length="86"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="99702" i_stop="98830" i_length="873"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="98829" e_stop="98767" e_length="63"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="98766" i_stop="98403" i_length="364"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="98402" e_stop="98337" e_length="66"/>
          </exon>
          <intron i_serial="11" don_prob="0.990" acc_prob="0.730">
            <gDNA_intron_boundary i_start="98336" i_stop="98253" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="98252" e_stop="97921" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103695" stop="103624"/>
              <exon start="103114" stop="103044"/>
              <exon start="102948" stop="102872"/>
              <exon start="102412" stop="102348"/>
              <exon start="101663" stop="101617"/>
              <exon start="101271" stop="101196"/>
              <exon start="100857" stop="100790"/>
              <exon start="100092" stop="100023"/>
              <exon start="99788" stop="99703"/>
              <exon start="98829" stop="98767"/>
              <exon start="98402" stop="98337"/>
              <exon start="98252" stop="97921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103694" stop="103624"/>
              <exon start="103114" stop="103044"/>
              <exon start="102948" stop="102872"/>
              <exon start="102412" stop="102348"/>
              <exon start="101663" stop="101617"/>
              <exon start="101271" stop="101196"/>
              <exon start="100857" stop="100790"/>
              <exon start="100092" stop="100023"/>
              <exon start="99788" stop="99703"/>
              <exon start="98829" stop="98778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103694" stop="103624"/>
              <exon start="103114" stop="103044"/>
              <exon start="102948" stop="102872"/>
              <exon start="102412" stop="102348"/>
              <exon start="101663" stop="101617"/>
              <exon start="101271" stop="101196"/>
              <exon start="100857" stop="100790"/>
              <exon start="100092" stop="100023"/>
              <exon start="99788" stop="99763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103694" stop="103624"/>
              <exon start="103114" stop="103044"/>
              <exon start="102948" stop="102872"/>
              <exon start="102412" stop="102348"/>
              <exon start="101663" stop="101617"/>
              <exon start="101271" stop="101196"/>
              <exon start="100857" stop="100790"/>
              <exon start="100092" stop="100023"/>
              <exon start="99788" stop="99763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103694" stop="103624"/>
              <exon start="103114" stop="103044"/>
              <exon start="102948" stop="102872"/>
              <exon start="102412" stop="102348"/>
              <exon start="101663" stop="101617"/>
              <exon start="101271" stop="101196"/>
              <exon start="100857" stop="100793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103683" stop="103624"/>
              <exon start="103114" stop="103044"/>
              <exon start="102948" stop="102872"/>
              <exon start="102412" stop="102348"/>
              <exon start="101663" stop="101617"/>
              <exon start="101271" stop="101196"/>
              <exon start="100857" stop="100790"/>
              <exon start="100092" stop="100023"/>
              <exon start="99788" stop="99776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103682" stop="103624"/>
              <exon start="103114" stop="103044"/>
              <exon start="102948" stop="102872"/>
              <exon start="102412" stop="102348"/>
              <exon start="101663" stop="101617"/>
              <exon start="101271" stop="101196"/>
              <exon start="100857" stop="100790"/>
              <exon start="100092" stop="100023"/>
              <exon start="99788" stop="99703"/>
              <exon start="98829" stop="98799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103674" stop="103624"/>
              <exon start="103114" stop="103044"/>
              <exon start="102948" stop="102872"/>
              <exon start="102412" stop="102348"/>
              <exon start="101663" stop="101617"/>
              <exon start="101271" stop="101240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103114" stop="103044"/>
              <exon start="102948" stop="102872"/>
              <exon start="102412" stop="102348"/>
              <exon start="101663" stop="101617"/>
              <exon start="101271" stop="101196"/>
              <exon start="100857" stop="100790"/>
              <exon start="100092" stop="100023"/>
              <exon start="99788" stop="99758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101663" stop="101617"/>
              <exon start="101271" stop="101196"/>
              <exon start="100857" stop="100790"/>
              <exon start="100092" stop="100023"/>
              <exon start="99788" stop="99703"/>
              <exon start="98829" stop="98790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100836" stop="100790"/>
              <exon start="100092" stop="100023"/>
              <exon start="99788" stop="99703"/>
              <exon start="98829" stop="98767"/>
              <exon start="98402" stop="98337"/>
              <exon start="98252" stop="97921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373682" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGGAACAAGCTATTTCTGCAAATCCTCTTTGCTGCTGAAACTTTGCATCTTCATCTTCAACCTCTCGATC : GTTTTCAACTGAAAATTAGTCCTTAAGGCAATGGGTGATAGTCAGTATTCTTTCTCACTTACAACTTTCAG : TCCATCTGGAAAGCTGGTTCAGATTGAGCATGCATTGACTGCTGTTGGATCTGGCCAAACATCATTGGGAATTAAAG : CTTCTAATGGTGTTGTAATTGCTACCGAGAAGAAATTACCATCTATCTTAGTTGATGAAGCATCT : GTGCAGAAAATTCAGACTTTGACATCAAATATTGGAGTTGTGTACAG : TGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGGAAAAGTAGGAAGTCAGCTGAGCAATATTACCGACTCTATAAA : GAACCAATCCCTGTCACTCAACTGGTGAGGGAAACTGCTGCTGTCATGCAGGAATTCACCCAATCAGG : TGGTGTAAGACCATTTGGTGTTTCACTCTTGGTTGCGGGTTTTGATGACAAGGGTCCACAACTATATCAG : GTTGATCCATCTGGTTCGTACTTCTCTTGGAAGGCTTCAGCAATGGGAAAGAATGTCTCTAATGCCAAGACATTTCTCGAGAAGAG : ATACACGGAGGAAATGGAGCTCGATGATGCTGTACACACTGCTATCCTGACATTGAAGGAGGG : ATTTGAAGGACAGATCTCCAGCAAAAACATTGAGATTGGAATTATTGGAACAGACAAAGTATTCAG : AATTCTCACTCCAACTGAAATAGATGATTACCTACAGGAAGTAGAATAGATTTTCCTTTCAGCCAAAAAGGAATTGGAAGTAGTTGTTGGACAGGAAGCGCAGCTAGGGGCATAGCACAAGCTCAACTATGGGAGGTTCTTGCTGGTTTGGGTATAATTTGATGTTTAATCAAAAACTAAACTTGGTTGTATGTATTTTGGTCATGCTATGGTGTTATTTATGCTCTGATCTGAAAAGCTTAATATGGGCTTTTCTCAGTTTCTTAAATTCACATATTGTTCAAGTATTACCTTAAAACACACATCAAAAAGAGAAAAATTACATTCATGAA</gDNA_template>
            <first_frame> G  G  T  S  Y  F  C  K  S  S  L  L  L  K  L  C  I  F  I  F  N  L  S  I  :  V  F  N  *  K  L  V  L  K  A  M  G  D  S  Q  Y  S  F  S  L  T  T  F  S :   P  S  G  K  L  V  Q  I  E  H  A  L  T  A  V  G  S  G  Q  T  S  L  G  I  K   : A  S  N  G  V  V  I  A  T  E  K  K  L  P  S  I  L  V  D  E  A  S  :  V  Q  K  I  Q  T  L  T  S  N  I  G  V  V  Y  S :   G  M  G  P  D  S  R  V  L  V  R  K  S  R  K  S  A  E  Q  Y  Y  R  L  Y  K  :  E  P  I  P  V  T  Q  L  V  R  E  T  A  A  V  M  Q  E  F  T  Q  S  G :   G  V  R  P  F  G  V  S  L  L  V  A  G  F  D  D  K  G  P  Q  L  Y  Q  :  V  D  P  S  G  S  Y  F  S  W  K  A  S  A  M  G  K  N  V  S  N  A  K  T  F  L  E  K  R :   Y  T  E  E  M  E  L  D  D  A  V  H  T  A  I  L  T  L  K  E  G :   F  E  G  Q  I  S  S  K  N  I  E  I  G  I  I  G  T  D  K  V  F  R :   I  L  T  P  T  E  I  D  D  Y  L  Q  E  V  E  *  I  F  L  S  A  K  K  E  L  E  V  V  V  G  Q  E  A  Q  L  G  A  *  H  K  L  N  Y  G  R  F  L  L  V  W  V  *  F  D  V  *  S  K  T  K  L  G  C  M  Y  F  G  H  A  M  V  L  F  M  L  *  S  E  K  L  N  M  G  F  S  Q  F  L  K  F  T  Y  C  S  S  I  T  L  K  H  T  S  K  R  E  K  L  H  S  *  </first_frame>
            <second_frame>  E  E  Q  A  I  S  A  N  P  L  C  C  *  N  F  A  S  S  S  S  T  S  R  S :   F  S  T  E  N  *  S  L  R  Q  W  V  I  V  S  I  L  S  H  L  Q  L  S   : V  H  L  E  S  W  F  R  L  S  M  H  *  L  L  L  D  L  A  K  H  H  W  E  L  K  :  L  L  M  V  L  *  L  L  P  R  R  N  Y  H  L  S  *  L  M  K  H  L :   C  R  K  F  R  L  *  H  Q  I  L  E  L  C  T   : V  A  W  V  L  I  L  E  F  W  F  G  K  V  G  S  Q  L  S  N  I  T  D  S  I  K :   N  Q  S  L  S  L  N  W  *  G  K  L  L  L  S  C  R  N  S  P  N  Q   : V  V  *  D  H  L  V  F  H  S  W  L  R  V  L  M  T  R  V  H  N  Y  I  R :   L  I  H  L  V  R  T  S  L  G  R  L  Q  Q  W  E  R  M  S  L  M  P  R  H  F  S  R  R   : D  T  R  R  K  W  S  S  M  M  L  Y  T  L  L  S  *  H  *  R  R   : D  L  K  D  R  S  P  A  K  T  L  R  L  E  L  L  E  Q  T  K  Y  S   : E  F  S  L  Q  L  K  *  M  I  T  Y  R  K  *  N  R  F  S  F  Q  P  K  R  N  W  K  *  L  L  D  R  K  R  S  *  G  H  S  T  S  S  T  M  G  G  S  C  W  F  G  Y  N  L  M  F  N  Q  K  L  N  L  V  V  C  I  L  V  M  L  W  C  Y  L  C  S  D  L  K  S  L  I  W  A  F  L  S  F  L  N  S  H  I  V  Q  V  L  P  *  N  T  H  Q  K  E  K  N  Y  I  H  E </second_frame>
            <third_frame>   R  N  K  L  F  L  Q  I  L  F  A  A  E  T  L  H  L  H  L  Q  P  L  D   : R  F  Q  L  K  I  S  P  *  G  N  G  *  *  S  V  F  F  L  T  Y  N  F  Q  :  S  I  W  K  A  G  S  D  *  A  C  I  D  C  C  W  I  W  P  N  I  I  G  N  *  S :   F  *  W  C  C  N  C  Y  R  E  E  I  T  I  Y  L  S  *  *  S  I   : C  A  E  N  S  D  F  D  I  K  Y  W  S  C  V  Q  :  W  H  G  S  *  F  S  S  F  G  S  E  K  *  E  V  S  *  A  I  L  P  T  L  *   : R  T  N  P  C  H  S  T  G  E  G  N  C  C  C  H  A  G  I  H  P  I  R  :  W  C  K  T  I  W  C  F  T  L  G  C  G  F  *  *  Q  G  S  T  T  I  S   : G  *  S  I  W  F  V  L  L  L  E  G  F  S  N  G  K  E  C  L  *  C  Q  D  I  S  R  E  E  :  I  H  G  G  N  G  A  R  *  C  C  T  H  C  Y  P  D  I  E  G  G  :  I  *  R  T  D  L  Q  Q  K  H  *  D  W  N  Y  W  N  R  Q  S  I  Q  :  N  S  H  S  N  *  N  R  *  L  P  T  G  S  R  I  D  F  P  F  S  Q  K  G  I  G  S  S  C  W  T  G  S  A  A  R  G  I  A  Q  A  Q  L  W  E  V  L  A  G  L  G  I  I  *  C  L  I  K  N  *  T  W  L  Y  V  F  W  S  C  Y  G  V  I  Y  A  L  I  *  K  A  *  Y  G  L  F  S  V  S  *  I  H  I  L  F  K  Y  Y  L  K  T  H  I  K  K  R  K  I  T  F  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103102" stop="103044"/>
                    <exon start="102948" stop="102872"/>
                    <exon start="102412" stop="102348"/>
                    <exon start="101663" stop="101617"/>
                    <exon start="101271" stop="101196"/>
                    <exon start="100857" stop="100790"/>
                    <exon start="100092" stop="100023"/>
                    <exon start="99788" stop="99703"/>
                    <exon start="98829" stop="98767"/>
                    <exon start="98402" stop="98337"/>
                    <exon start="98252" stop="98204"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLVLKAMGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQTLTSNIGVVYSGMGPDSRVLVRKSRKSAEQYYRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGFDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEEMELDDAVHTAILTLKEGFEGQISSKNIEIGIIGTDKVFRILTPTEIDDYLQEVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98403" e_stop="98337"/>
            <exon e_start="98252" e_stop="97963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.730" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98403" e_stop="98337" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.730">
            <gDNA_intron_boundary i_start="98336" i_stop="98253" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98252" e_stop="97963" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98403" stop="98337"/>
              <exon start="98252" stop="97963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTGAAGGACAGATCTCCAGCAAAAACATTGAGATTGGAATTATTGGAACAGACAAAGTATTCAG : AATTCTCACTCCAACTGAAATAGATGATTACCTACAGGAAGTAGAATAGATTTTCCTTTCAGCCAAAAAGGAATTGGAAGTAGTTGTTGGACAGGAAGCGCAGCTAGGGGCATAGCACAAGCTCAACTATGGGAGGTTCTTGCTGGTTTGGGTATAATTTGATGTTTAATCAAAAACTAAACTTGGTTGTATGTATTTTGGTCATGCTATGGTGTTATTTATGCTCTGATCTGAAAAGCTTAATATGGGCTTTTCTCAGTTTCTTAAATTCACATATTGTTCAAGTATTA</gDNA_template>
            <first_frame> D  L  K  D  R  S  P  A  K  T  L  R  L  E  L  L  E  Q  T  K  Y  S   : E  F  S  L  Q  L  K  *  M  I  T  Y  R  K  *  N  R  F  S  F  Q  P  K  R  N  W  K  *  L  L  D  R  K  R  S  *  G  H  S  T  S  S  T  M  G  G  S  C  W  F  G  Y  N  L  M  F  N  Q  K  L  N  L  V  V  C  I  L  V  M  L  W  C  Y  L  C  S  D  L  K  S  L  I  W  A  F  L  S  F  L  N  S  H  I  V  Q  V  L </first_frame>
            <second_frame>  I  *  R  T  D  L  Q  Q  K  H  *  D  W  N  Y  W  N  R  Q  S  I  Q  :  N  S  H  S  N  *  N  R  *  L  P  T  G  S  R  I  D  F  P  F  S  Q  K  G  I  G  S  S  C  W  T  G  S  A  A  R  G  I  A  Q  A  Q  L  W  E  V  L  A  G  L  G  I  I  *  C  L  I  K  N  *  T  W  L  Y  V  F  W  S  C  Y  G  V  I  Y  A  L  I  *  K  A  *  Y  G  L  F  S  V  S  *  I  H  I  L  F  K  Y   </second_frame>
            <third_frame>   F  E  G  Q  I  S  S  K  N  I  E  I  G  I  I  G  T  D  K  V  F  R :   I  L  T  P  T  E  I  D  D  Y  L  Q  E  V  E  *  I  F  L  S  A  K  K  E  L  E  V  V  V  G  Q  E  A  Q  L  G  A  *  H  K  L  N  Y  G  R  F  L  L  V  W  V  *  F  D  V  *  S  K  T  K  L  G  C  M  Y  F  G  H  A  M  V  L  F  M  L  *  S  E  K  L  N  M  G  F  S  Q  F  L  K  F  T  Y  C  S  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0096B05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="112684" PGL_stop="105981"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112684" e_stop="112024"/>
            <exon e_start="108156" e_stop="107798"/>
            <exon e_start="107653" e_stop="107642"/>
            <exon e_start="107565" e_stop="107515"/>
            <exon e_start="106294" e_stop="106245"/>
            <exon e_start="106004" e_stop="105981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.718" acc_prob="0.000" e_score="0.978"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.750"/>
          <exon-intron don_prob="0.900" acc_prob="0.983" e_score="0.529"/>
          <exon-intron don_prob="0.049" acc_prob="0.397" e_score="0.540"/>
          <exon-only e_score="0.542"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112684" e_stop="112024" e_length="661"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112023" i_stop="108157" i_length="3867"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="108156" e_stop="107798" e_length="359"/>
          </exon>
          <intron i_serial="2" don_prob="0.718" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107797" i_stop="107654" i_length="144"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="107653" e_stop="107642" e_length="12"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107641" i_stop="107566" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="0.529">
            <gDNA_exon_boundary e_start="107565" e_stop="107515" e_length="51"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.983">
            <gDNA_intron_boundary i_start="107514" i_stop="106295" i_length="1220"/>
          </intron>
          <exon e_serial="5" e_score="0.540">
            <gDNA_exon_boundary e_start="106294" e_stop="106245" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.049" acc_prob="0.397">
            <gDNA_intron_boundary i_start="106244" i_stop="106005" i_length="240"/>
          </intron>
          <exon e_serial="6" e_score="0.542">
            <gDNA_exon_boundary e_start="106004" e_stop="105981" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112684" stop="112024"/>
              <exon start="108156" stop="107842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112684" stop="112024"/>
              <exon start="108156" stop="108035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112683" stop="112232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112577" stop="112126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112250" stop="112024"/>
              <exon start="108156" stop="107798"/>
              <exon start="107653" stop="107642"/>
              <exon start="107565" stop="107515"/>
              <exon start="106294" stop="106245"/>
              <exon start="106004" stop="105981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717293" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGATTTTTATCTCACAATACATTTTCTTCTATTCCTTTAACCTTTGTATAATCTTTCCAATAGTTGCCACAATTTTTGGCTACAAAAATCGATCAATCACAATCCATTTCAAGAATTCCACTTGAAAAAGGAAAAAAAAAATAATATGTCAAATTTTGATAGAGGCAAAGAATTGGTTGAGGGATCATCACCTGCAACGCCTAGTCGATATGAGTCTCAAAAACGTCGTGACTGGAATACGTTTGGTCAGTACCTAAGGAATCAAAGACCACCCGTTTCCATTTCCCAATGCAATAGCAACCACGTGTTGGAGTTCCTTAGGTACCTAGACCAATTTGGGAAGACTAAGGTTCATTTGCAAGGTTGTATCTTTTATGGTCAACCCGAGCCCCCGGCTCCCTGTACTTGTCCGTTAAGACAAGCCTGGGGGAGCCTGGATGCTCTCATCGGGCGGCTCAGAGCCGCCTATGAGGAGAACGGTGGCTCCCCCGAGACAAACCCTTTCGCGAGCGGCGCGATTAGGGTGTATCTAAGGGAAGTGAAAGAGTGTCAAGCAAAAGCAAGAGGAATTCCGTACAAGAAGAAAAAGAAGAAGGCTAGTGAGAGCAAAGGAGATGATGATTGCACTTCTTCTCACCCATTTTCTTGATCCAAAAAATG : AAAAGTGATGAATTGTGTCTTCATGAGAAGGTTATTGCTGAACACTTAAGGGATTTGCTATATATATAGCTCTGGAAGAATTATGTTTCATATTTATTAAGTCATCATTTGTTGTTTTTTTTATATATATAAGTGCCTTGATTTCCTTTTTTTCTGCTAATTAATTAATTAGCAGTCATGTTCAATCAGAGGCATTTTCTTCAAATTATTACTGCTTAGTAATTTAAATATTCTACTGTTCTTTCCCATTATATATTTCTCAGTTGTTTGTGAATCCTAAACTAGTTCTATTGTAAGATGATTATTATAAACTCTTTTTGTACAATTAAGTGATCATTAATTTGAATCCAAACCCTACT : ATAAAATCAAAA : CATGAAAACGAAAATTTTAAAGCTAAATTATTTCTATATATAAAATAAAAA : GAATACGGGGGCCACTTGCACCTTAACAAATCTAAAGAAGAGATTATTGA : GTGAAAACTATTCACTTATCCGTA</gDNA_template>
            <first_frame> V  I  F  I  S  Q  Y  I  F  F  Y  S  F  N  L  C  I  I  F  P  I  V  A  T  I  F  G  Y  K  N  R  S  I  T  I  H  F  K  N  S  T  *  K  R  K  K  K  I  I  C  Q  I  L  I  E  A  K  N  W  L  R  D  H  H  L  Q  R  L  V  D  M  S  L  K  N  V  V  T  G  I  R  L  V  S  T  *  G  I  K  D  H  P  F  P  F  P  N  A  I  A  T  T  C  W  S  S  L  G  T  *  T  N  L  G  R  L  R  F  I  C  K  V  V  S  F  M  V  N  P  S  P  R  L  P  V  L  V  R  *  D  K  P  G  G  A  W  M  L  S  S  G  G  S  E  P  P  M  R  R  T  V  A  P  P  R  Q  T  L  S  R  A  A  R  L  G  C  I  *  G  K  *  K  S  V  K  Q  K  Q  E  E  F  R  T  R  R  K  R  R  R  L  V  R  A  K  E  M  M  I  A  L  L  L  T  H  F  L  D  P  K  N   : E  K  *  *  I  V  S  S  *  E  G  Y  C  *  T  L  K  G  F  A  I  Y  I  A  L  E  E  L  C  F  I  F  I  K  S  S  F  V  V  F  F  I  Y  I  S  A  L  I  S  F  F  S  A  N  *  L  I  S  S  H  V  Q  S  E  A  F  S  S  N  Y  Y  C  L  V  I  *  I  F  Y  C  S  F  P  L  Y  I  S  Q  L  F  V  N  P  K  L  V  L  L  *  D  D  Y  Y  K  L  F  L  Y  N  *  V  I  I  N  L  N  P  N  P  T  :  I  K  S  K  :  H  E  N  E  N  F  K  A  K  L  F  L  Y  I  K  *  K  :  E  Y  G  G  H  L  H  L  N  K  S  K  E  E  I  I  E :   *  K  L  F  T  Y  P   </first_frame>
            <second_frame>  *  F  L  S  H  N  T  F  S  S  I  P  L  T  F  V  *  S  F  Q  *  L  P  Q  F  L  A  T  K  I  D  Q  S  Q  S  I  S  R  I  P  L  E  K  G  K  K  K  *  Y  V  K  F  *  *  R  Q  R  I  G  *  G  I  I  T  C  N  A  *  S  I  *  V  S  K  T  S  *  L  E  Y  V  W  S  V  P  K  E  S  K  T  T  R  F  H  F  P  M  Q  *  Q  P  R  V  G  V  P  *  V  P  R  P  I  W  E  D  *  G  S  F  A  R  L  Y  L  L  W  S  T  R  A  P  G  S  L  Y  L  S  V  K  T  S  L  G  E  P  G  C  S  H  R  A  A  Q  S  R  L  *  G  E  R  W  L  P  R  D  K  P  F  R  E  R  R  D  *  G  V  S  K  G  S  E  R  V  S  S  K  S  K  R  N  S  V  Q  E  E  K  E  E  G  *  *  E  Q  R  R  *  *  L  H  F  F  S  P  I  F  L  I  Q  K  M  :  K  S  D  E  L  C  L  H  E  K  V  I  A  E  H  L  R  D  L  L  Y  I  *  L  W  K  N  Y  V  S  Y  L  L  S  H  H  L  L  F  F  L  Y  I  *  V  P  *  F  P  F  F  L  L  I  N  *  L  A  V  M  F  N  Q  R  H  F  L  Q  I  I  T  A  *  *  F  K  Y  S  T  V  L  S  H  Y  I  F  L  S  C  L  *  I  L  N  *  F  Y  C  K  M  I  I  I  N  S  F  C  T  I  K  *  S  L  I  *  I  Q  T  L  L :   *  N  Q  N :   M  K  T  K  I  L  K  L  N  Y  F  Y  I  *  N  K  K :   N  T  G  A  T  C  T  L  T  N  L  K  K  R  L  L   : S  E  N  Y  S  L  I  R  </second_frame>
            <third_frame>   D  F  Y  L  T  I  H  F  L  L  F  L  *  P  L  Y  N  L  S  N  S  C  H  N  F  W  L  Q  K  S  I  N  H  N  P  F  Q  E  F  H  L  K  K  E  K  K  N  N  M  S  N  F  D  R  G  K  E  L  V  E  G  S  S  P  A  T  P  S  R  Y  E  S  Q  K  R  R  D  W  N  T  F  G  Q  Y  L  R  N  Q  R  P  P  V  S  I  S  Q  C  N  S  N  H  V  L  E  F  L  R  Y  L  D  Q  F  G  K  T  K  V  H  L  Q  G  C  I  F  Y  G  Q  P  E  P  P  A  P  C  T  C  P  L  R  Q  A  W  G  S  L  D  A  L  I  G  R  L  R  A  A  Y  E  E  N  G  G  S  P  E  T  N  P  F  A  S  G  A  I  R  V  Y  L  R  E  V  K  E  C  Q  A  K  A  R  G  I  P  Y  K  K  K  K  K  K  A  S  E  S  K  G  D  D  D  C  T  S  S  H  P  F  S  *  S  K  K  * :   K  V  M  N  C  V  F  M  R  R  L  L  L  N  T  *  G  I  C  Y  I  Y  S  S  G  R  I  M  F  H  I  Y  *  V  I  I  C  C  F  F  Y  I  Y  K  C  L  D  F  L  F  F  C  *  L  I  N  *  Q  S  C  S  I  R  G  I  F  F  K  L  L  L  L  S  N  L  N  I  L  L  F  F  P  I  I  Y  F  S  V  V  C  E  S  *  T  S  S  I  V  R  *  L  L  *  T  L  F  V  Q  L  S  D  H  *  F  E  S  K  P  Y   : Y  K  I  K   : T  *  K  R  K  F  *  S  *  I  I  S  I  Y  K  I  K   : R  I  R  G  P  L  A  P  *  Q  I  *  R  R  D  Y  *  :  V  K  T  I  H  L  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112643" stop="112035"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLYNLSNSCHNFWLQKSINHNPFQEFHLKKEKKNNMSNFDRGKELVEGSSPATPSRYESQKRRDWNTFGQYLRNQRPPVSISQCNSNHVLEFLRYLDQFGKTKVHLQGCIFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVKECQAKARGIPYKKKKKKASESKGDDDCTSSHPFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="118325" PGL_stop="120157"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118325" e_stop="118470"/>
            <exon e_start="118659" e_stop="118806"/>
            <exon e_start="119516" e_stop="119722"/>
            <exon e_start="119803" e_stop="120157"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.478" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118325" e_stop="118470" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="118471" i_stop="118658" i_length="188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118659" e_stop="118806" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.885" acc_prob="0.478">
            <gDNA_intron_boundary i_start="118807" i_stop="119515" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119516" e_stop="119722" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="119723" i_stop="119802" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="119803" e_stop="120157" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118325" stop="118470"/>
              <exon start="118659" stop="118806"/>
              <exon start="119516" stop="119722"/>
              <exon start="119803" stop="120026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118729" stop="118806"/>
              <exon start="119516" stop="119722"/>
              <exon start="119803" stop="120157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368886" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119590" stop="119722"/>
              <exon start="119803" stop="120102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAAAATCAAGCCTTCTGATGTGGGTCTTGAGCAAGAAGCACAACTTGTACGGAGTTGGAATAGTACTCTGCACGAGCGCAATGGGGAACTACAGCCACCGCCACCAATCAAATACCTGCACTTACATGAATGTGACAGCTTCTCT : ATGGGGATATTTTGCATGCCGCCTTCCTCTATCATACCTCTACACAATCACCCTGGGATGACAGTCTTAAGTAAGCTGGTATATGGTTCCTTTCACGTGAAAGCCTATGATTGGATCAATATTCCAGGTCCTTTGGTTCCATTGGAAG : GTGCAAGACCGGCAAAGCTCGTTAAAGACTGTGACATGACTGCTCCGTGTGGGACAACTGCTCTGTATCCTACTTCTGGAGGCAACATCCATTGTTTCAAAGCTATAACTCCTTGTGCTATTTTTGACATCCTTTCTCCGCCTTACTCTTCTGAGGATGGACGGCATTGCACTTATTTCCGGAGGTCTCCAGTAGCGGATCTGCCAG : GTGAACTCGAGGTGGATGGAGTGACATTCTCCGACGTGACTTGGTTGGGAGAGTTTCAACTTCCCGATGACTTTATGATCCGTAGAGGGCAATACAAAGGCCGTGTCATCAAAACATGACATGTTTCATTTTTTTGGTTCTGTCCAACTTTTATGATGCATTCAGGTAAAATGAGTAACGTGTCTACCGCCGGTCTGAGAATAATGATGATGATTTTTATATTGGTGAGAAAATAGGGGCATTTGAGATGTATATATCATTATATACCATTACATTAATTTACTGACCTCACCTTAAAATAGTTAACGGTTGGTTAGACAGAGTATAAATGAAGTTTTGATCCATTAAAAAAGCA</gDNA_template>
            <first_frame> I  K  S  S  L  L  M  W  V  L  S  K  K  H  N  L  Y  G  V  G  I  V  L  C  T  S  A  M  G  N  Y  S  H  R  H  Q  S  N  T  C  T  Y  M  N  V  T  A  S  L :   W  G  Y  F  A  C  R  L  P  L  S  Y  L  Y  T  I  T  L  G  *  Q  S  *  V  S  W  Y  M  V  P  F  T  *  K  P  M  I  G  S  I  F  Q  V  L  W  F  H  W  K  :  V  Q  D  R  Q  S  S  L  K  T  V  T  *  L  L  R  V  G  Q  L  L  C  I  L  L  L  E  A  T  S  I  V  S  K  L  *  L  L  V  L  F  L  T  S  F  L  R  L  T  L  L  R  M  D  G  I  A  L  I  S  G  G  L  Q  *  R  I  C  Q  :  V  N  S  R  W  M  E  *  H  S  P  T  *  L  G  W  E  S  F  N  F  P  M  T  L  *  S  V  E  G  N  T  K  A  V  S  S  K  H  D  M  F  H  F  F  G  S  V  Q  L  L  *  C  I  Q  V  K  *  V  T  C  L  P  P  V  *  E  *  *  *  *  F  L  Y  W  *  E  N  R  G  I  *  D  V  Y  I  I  I  Y  H  Y  I  N  L  L  T  S  P  *  N  S  *  R  L  V  R  Q  S  I  N  E  V  L  I  H  *  K  S  </first_frame>
            <second_frame>  *  N  Q  A  F  *  C  G  S  *  A  R  S  T  T  C  T  E  L  E  *  Y  S  A  R  A  Q  W  G  T  T  A  T  A  T  N  Q  I  P  A  L  T  *  M  *  Q  L  L   : Y  G  D  I  L  H  A  A  F  L  Y  H  T  S  T  Q  S  P  W  D  D  S  L  K  *  A  G  I  W  F  L  S  R  E  S  L  *  L  D  Q  Y  S  R  S  F  G  S  I  G  R :   C  K  T  G  K  A  R  *  R  L  *  H  D  C  S  V  W  D  N  C  S  V  S  Y  F  W  R  Q  H  P  L  F  Q  S  Y  N  S  L  C  Y  F  *  H  P  F  S  A  L  L  F  *  G  W  T  A  L  H  L  F  P  E  V  S  S  S  G  S  A  R :   *  T  R  G  G  W  S  D  I  L  R  R  D  L  V  G  R  V  S  T  S  R  *  L  Y  D  P  *  R  A  I  Q  R  P  C  H  Q  N  M  T  C  F  I  F  L  V  L  S  N  F  Y  D  A  F  R  *  N  E  *  R  V  Y  R  R  S  E  N  N  D  D  D  F  Y  I  G  E  K  I  G  A  F  E  M  Y  I  S  L  Y  T  I  T  L  I  Y  *  P  H  L  K  I  V  N  G  W  L  D  R  V  *  M  K  F  *  S  I  K  K  A </second_frame>
            <third_frame>   K  I  K  P  S  D  V  G  L  E  Q  E  A  Q  L  V  R  S  W  N  S  T  L  H  E  R  N  G  E  L  Q  P  P  P  P  I  K  Y  L  H  L  H  E  C  D  S  F  S  :  M  G  I  F  C  M  P  P  S  S  I  I  P  L  H  N  H  P  G  M  T  V  L  S  K  L  V  Y  G  S  F  H  V  K  A  Y  D  W  I  N  I  P  G  P  L  V  P  L  E   : G  A  R  P  A  K  L  V  K  D  C  D  M  T  A  P  C  G  T  T  A  L  Y  P  T  S  G  G  N  I  H  C  F  K  A  I  T  P  C  A  I  F  D  I  L  S  P  P  Y  S  S  E  D  G  R  H  C  T  Y  F  R  R  S  P  V  A  D  L  P   : G  E  L  E  V  D  G  V  T  F  S  D  V  T  W  L  G  E  F  Q  L  P  D  D  F  M  I  R  R  G  Q  Y  K  G  R  V  I  K  T  *  H  V  S  F  F  W  F  C  P  T  F  M  M  H  S  G  K  M  S  N  V  S  T  A  G  L  R  I  M  M  M  I  F  I  L  V  R  K  *  G  H  L  R  C  I  Y  H  Y  I  P  L  H  *  F  T  D  L  T  L  K  *  L  T  V  G  *  T  E  Y  K  *  S  F  D  P  L  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0096B05.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118327" stop="118470"/>
                    <exon start="118659" stop="118806"/>
                    <exon start="119516" stop="119722"/>
                    <exon start="119803" stop="119921"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIKPSDVGLEQEAQLVRSWNSTLHERNGELQPPPPIKYLHLHECDSFSMGIFCMPPSSIIPLHNHPGMTVLSKLVYGSFHVKAYDWINIPGPLVPLEGARPAKLVKDCDMTAPCGTTALYPTSGGNIHCFKAITPCAIFDILSPPYSSEDGRHCTYFRRSPVADLPGELEVDGVTFSDVTWLGEFQLPDDFMIRRGQYKGRVIKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 206 chains have been computed
$ 
$ memory statistics:
$ 509656 bytes spliced alignments in total
$ 125 spliced alignments have been stored
$ 4077 bytes was the average size of a spliced alignment
$ 24392 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1742 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 249 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-08 14:37:30
-->
