<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-27 11:06:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538254" ref_strand="+" ref_description="SGN-E538254 [TUS-57-F6](-)">
      <seq>agtacaatcacgcccctccatctaatcttttagagggaaggggaactcaaagtggtgcacacgtcgatatattgggaaattttgcacttattgaagatatcattagagtagctgctgtggctactggagaagccctgggaggagatcaattatactcgggtattttcaagtggtctgaaaggattaaactgaagctttagatttcaaatgaatttcatgggtgcaatcaattggtttgaggaacgggtggtgctctactatacgtcttgcttctagtctcctggctgaaacatctgccgtatacttgaaacaataatactctgggaaacctgaagctgcaaatgtcgcaggaagcatggatgtataggtaaattttggacataacattgattttttgcctgtaattatatgatccttgatagcatagtgtagtctgtagacctaatattggagcacaagtactgcatttatatgttcaattattacacagctcacaaggagggacagagtgtatttctatcgtgggttatttgaaatttataagtaaatatttactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9040" stop="10278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9340" g_stop="9549" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9550" i_stop="9629" i_length="80">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9630" g_stop="9975" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="557" r_length="347" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="567"/>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E538254" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9340" e_stop="9549"/>
          <exon e_start="9630" e_stop="9975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACAATCACGCCCCTCCAGCTAATCTTTTAGAGGGAAGGGGAACGCAAAGTGGTGCACACGTTGATATAATGGGAAATTTTGCACTTATTGAAGATATCATTANAGTAGCTGCTGGGGCTACTGGAGAAGACCTGGGAGGAGATCAATTATACTCGGGTATTTTCAAGTGGTCTGAAAGGATTAAACTGAAGCTTTAAATTTCAAATGGTGAGATTTACGCCATTTCTTCCTTACAAGCTTTAGATTGGTGCTATATGTTTCTTAGATAGCTGCTTTTGTATCTGCAGAATTTCATGGGTGCAATCAATTGGTTTGAGGAACTGGTGGTGCTCTACTATACGTCNTGCTTCTCGTCTCCTGGCTGAAACATCTGCTGTATACTTGAAACAATAATACTCTGGGAAACCTGAAGCTGCAAATGTCGCAGGAAGCATGGATGTATAGGTAAATTTTGGACATAACATTGATTTTTTGCCTGTAATTATATGATCCTTGATAGCATAGTGTAGTCTGTAGACCTAATATTGGAGCACAAGTACTGCATTTATATGTTCAATTATTACACAGCACACAAGGAGGGACA-AGTGTATTTCTATCGTGGGTTATTTGAAATTTATAAGTAAATATTTACTC</genome_strand>
        <mrna_strand>AGTACAATCACGCCCCTCCATCTAATCTTTTAGAGGGAAGGGGAACTCAAAGTGGTGCACACGTCGATATATTGGGAAATTTTGCACTTATTGAAGATATCATTAGAGTAGCTGCTGTGGCTACTGGAGAAGCCCTGGGAGGAGATCAATTATACTCGGGTATTTTCAAGTGGTCTGAAAGGATTAAACTGAAGCTTTAGATTTCAAATG................................................................................AATTTCATGGGTGCAATCAATTGGTTTGAGGAACGGGTGGTGCTCTACTATACGTCTTGCTTCTAGTCTCCTGGCTGAAACATCTGCCGTATACTTGAAACAATAATACTCTGGGAAACCTGAAGCTGCAAATGTCGCAGGAAGCATGGATGTATAGGTAAATTTTGGACATAACATTGATTTTTTGCCTGTAATTATATGATCCTTGATAGCATAGTGTAGTCTGTAGACCTAATATTGGAGCACAAGTACTGCATTTATATGTTCAATTATTACACAGCTCACAAGGAGGGACAGAGTGTATTTCTATCGTGGGTTATTTGAAATTTATAAGTAAATATTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734705" ref_strand="+" ref_description="SGN-E734705 [LB13BE06]">
      <seq>cactgatgtggaggatttttatcatcaatgtgaccctgaaaaggaaaatctctgcctctatggatatccaagtgagcagtgggaagtcaatttgccagctgaggaggtgcctccagagcttccagagccagcactaggtataaacttcgctagagatgggatgcaagaaaaggaatggttagctctagttgctgtacatagtgatgcatggctactctctgtttccttctattttggtgccagattcggctttgatagagctgacaggaaacgtcttttcaacatgatgaatgatctgccaacaatatatgaagttgttactggagtggccaagaagagagtaaaggataaatcaacagtttcaaatcacagcagcaacaagtcaaaatcaaattctaaagcgggtaaatactcaaagcctcaagtaaaagatgaggatgatggatttgatgaggaagaagaagatgaacatggcgacactctgtgtggtgcatgtggtgagaactatgcttcagatgaattctggattttctgtgacatgtgcgagaggtggttccatggaaactgtgtgaagatcacccctgccaaggccgagcatataaagcagtacaaatgcccttcatgcagcaacaagaggatacgcccatgacatcccctatcagatatgtgctgagttccacaacttgtaattgttcatgttgagctcagctcactgccatcttacaaatatcagtaaggcatgtgtagtcagagtcctagtctcttatgtttatcagggggcttaactagtttagttccctcaagacacccttttattcaactctaaacaattggatattaaatgcctaacctttcagtatcaaatgcctactaaacgcagttcgtctgaaacatatgttgcacctgtagtttttgggggctccttgtttgatcataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="19757" stop="15319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19537" g_stop="19533" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19532" i_stop="19455" i_length="78">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19454" g_stop="19422" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="38" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19421" i_stop="18235" i_length="1187">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18234" g_stop="18006" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="267" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18005" i_stop="17625" i_length="381">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17624" g_stop="17489" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="403" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17488" i_stop="16155" i_length="1334">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16154" g_stop="15614" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="944" r_length="541" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E734705" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>944</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19537" e_stop="19533"/>
          <exon e_start="19454" e_stop="19422"/>
          <exon e_start="18234" e_stop="18006"/>
          <exon e_start="17624" e_stop="17489"/>
          <exon e_start="16154" e_stop="15614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGGTATCGACAATTTCCTGTTTTGCTGCTCTGTTTTGTAAGTTTATGCTACATTTCATCATTTTTCTCTTGCTTTTGCAGATGTGGAGGATTTTTATCATCAATGTGACCCTGGTTAGTTAGAGATCTTTACTTTCTTTTTCCAATTTACATTTCCGCCTTTGATAAAATTTTTCTCTTCCGTTGCCTGTATGTTGCTTTCTGTGTTTGTTCTCCAGTGTTTCGCTAATTTTTACCGGATTTGGTTGGTTTTCAGTTTTCTTGTTATTTGCTAGCTCTTTTTCACATTTTACCCAACTGATTACTGTTTCTGATGGCGACCCAAATGGAACCTTTTTTATTTGAGATAAAAATAATCAATCAAATTTTCGGGTTTTGGGTCAAAGGACAGAAGAATGTAGCGCCTTCTTTTTCTTTTCTTTCCAATTATAAGCAATTTAATAAAAATTAAACTACTGGATAATCTGTTTTTTTTTTTTTGCTGTATTGTCCTTTGTCCTGTTTGTATAGACATGGTTTTCTTTTTTGTTGCGTGACTTTTAACTGAGATTTTGTTTTTACTGGTAAATATCTCTTCCAATTCAAGATTTTAGAGTTGTTTAATGGGGTGTTGGTTTTCTGCTTGCGTCTAGAGCTGTTCATAATGCTTCAAGAACACTACTCTCTCTGTTATGTACTGTACCGTGTGCTTAATGTGAATTCATTCTACTTTAAATGGAGATGTTTCAGACATATGAGTTGTGGGAGAAATATCTTATTTAGATTGTTGGTTAAGCTTTCTGCCCAAACTGAAATTGCCATGTTTACCGGTTGGGTGGACTTGACCTGGAGATGAGTGAATAGTAACTGTGGTCTTATGCTCTTACTGTATGTTGTCCCTCACAATATGATTCTAGCAATCAATCCCCAGATGTTTTAAGTTTTCATAGCTTGGAGGATATTGGTCTAACTTCATATACAGGCTTCATTTTTTCGCTTTGATTGAGTTGCTATTGCAGATGTAGGATCATTTTCTGTCTGCTCCTTTTTTGCTTACTGACCAGCTTTGTTATTGATTTAAGTCTCAAATTACTAATTATCATTTCGTGAATTCTCATCCAACTTAATAAATTCTGTGACAAAAGATTGAAGCTTGTGCCTGATTTTGTCCTTAGAATACTTTTTGCATGATAAAGATATTGGTGGCGCCAATGTTGTATTCTGACTTCGCTGTGCTTAGATGCTGTTTCTTATTGAACAAGTGTTTTTCTGATTGTGATTAGTCTTTGTTTACTGTCTCTTTATATTTGGATACCTTGCAGAAAAGGAAAATCTCTGCCTCTATGGATATCCAAGTGAGCAGTGGGAAGTCAATTTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCACTAGGTATAAACTTCGCTAGAGATGGGATGCAAGAAAAGGAATGGTTAGCTCTAGTTGCTGTACATAGTGATGCATGGCTACTCTCTGTTTCCTTCTATTTTGGTGCCAGATTCGGCTTTGATAGAGCTGACAGGTAAACTTGATTCTACAGCAATATAAGAAAATTGTTTCTTGGTTATTTGTAATTTTAATAGGTCACCTTTCAAGTGATTTATTTGTTTATATTTTTTTTTCCTTTTTAATCATATCAGAATTGTGTCTTTTCTTCAAATATCTTGCTTTGAATCATAAATAGTTGCGAACAGCATACAAGTCTTTGCTGTGTCATTTTGTAAAGCATTCTGGAAGTATGCTTATAATTACACCTTGTCAGATGTCAAAGCTTGGAGGAATTGTCCCAACAGGCATATGTGTGATTTCTTTGATGGAGAAAAACAATTATTTCCTTCATTTAGAGTCCTTAGTATGGGATATTTTTTCACTTCACTGAATTCTTTTGATCTCTTTCATCTAGGAAACGTCTTTTCAACATGATGAATGATCTGCCAACAATATATGAAGTTGTTACTGGAGTGGCCAAGAAGAGAGTAAAGGATAAATCAACAGTTTCAAATCACAGCAGCAACAAGTCAAAATCAAATTCTAAAGCGGTACTGTTGAAAACCTCTCCAGTCCCCAATCCTTCTCTCTTCTCTCAAATAGATGTTTTTCTTGGATAACAGTAGCTGTGCAGTAGTGTTCAAAGGATTCCCTTTGGACAGTATTTAGCTGAAAACCTTCAGCTTTAGGACATTGCCACTGAATTCTTTCCTAAATTTATGTTTGTCAATCTAAGATATGGTCAATGAATCACTAGATGGATCCTCTCTGATTTTGAGCCATGGTTCAGATTTCAATCATCCACACCCATTTTGAATTATAAATGTGTATGATGACTCTCGACAGCAGTAAGTGGCATATTTAGTGATGTTTTGCTATTGTCATAGAAGTTTAATAACATTGAGAGGTAGAAATCAGGAAAGTGAAGCATTTGTATAATGTTCTCCTACAGTGGAAAACTAATCTTTCTGCCCTGTTATAGTATAGGAGTTCAAACGGGCCTCCTAAGTTGATATATTGTTGATTTGTCATTTTCTTGTATAATTGCTTACCTTGGTGTTCGGTGTAAAAACAGAACAGGCTTGCGTCTATGCATTTCTGGGCAGGTCACGTAATGGTTACCCCGTTTCTAGTTTGAGGAAGGCTTATTAGTCAGTTAAAAGTGATTTGAACTATAGTAATTACAATTGTGTTTATGCTTAAGTTTGATAGAAGAGGCTTTTTAGATGCCTAGGTACTAGGGTGAAGTCAATGCTGGATAGAAGAGGTATTGTGTAAGGTAAACTATGAGATTCCTATGAAGCCTTAGTGTTGTGTTATTATTATTAATCTATCATTTCTCCTATGTAACTTCATTCAATGTTTTATGTCTACCTCAACTCCTGCAGCTGCTTCATCATTGGCCTTTTTGCATAAATTGATTCTCTATCTAAAATTATTTGTGATTTTGGTGCTGCTGTTGTGCAACATTTTACACTTGATTTTTCTTTGCACTACGTTTGTACATTTTGGTTGTCTTTAGTGAATTATATCGAACGGCTTTGAAAAATAAACCTTTCTTCTCAAAAGAAATAAATAAAATGAACTTGTGCCGTCTTGCAGTTGCTTGTGCTAAGTTTACTGTCTTCTGAAGTATCCTCTTTTAAACTTGTCACTGGGTATCTTGTTGTATCATCATCTAGACTAGATGTTACTGCATCTACCTCATTGTCATTGTGTCTATTTCAATGCACTAAGCCATATTCCTCTAACTAAATTCAGTATCATATACCCTGTATCATTATGCCTCTAATGTGTTGACATCTTAGTTATAGATCCATGCTTCATTGCTTTTTTTCCATGCATGGCGCAGCAGACATCCACATTGTTTTATTTTAAATCTCAGGGTAAATACTCAAAGCCTCAAGTAAAAGATGAGGATGATGGATTTGATGAGGAAGAAGAAGATGAACATGGCGACACTCTGTGTGGTGCATGTGGTGAGAACTATGCTTCAGATGAATTCTGGATTTTCTGTGACATGTGCGAGAGGTGGTTCCATGGAAACTGTGTGAAGATCACCCCTGCCAAGGCCGAGCATATAAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGGATACGCCCATGACATCCCCTATCAGATATGTGCTGAGTTCCACAACTTGTAATTGTTCATGTTGAGCTCAGCTCACTGCCATCTTACAAATATCAGTAAGGCATGTGTAGTCAGAGTCCTAGTCTCTTATGTTTATCAGGGTGCTTAACTAGTTTAGTTCCCTCAAGACACCCTTTTATTCAACTCTAAACAATTGGATATTAGATGCATAAACTTTCAGTATCAAATGCTAACTAAACGCAGTTCGTCTGAAGCATATGTTGCAGCTGTAGTTTTTGGGTGCTCCTTGTTTGATCATAAAACGTGT</genome_strand>
        <mrna_strand>CACTG..............................................................................ATGTGGAGGATTTTTATCATCAATGTGACCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAAAATCTCTGCCTCTATGGATATCCAAGTGAGCAGTGGGAAGTCAATTTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCACTAGGTATAAACTTCGCTAGAGATGGGATGCAAGAAAAGGAATGGTTAGCTCTAGTTGCTGTACATAGTGATGCATGGCTACTCTCTGTTTCCTTCTATTTTGGTGCCAGATTCGGCTTTGATAGAGCTGACAG.............................................................................................................................................................................................................................................................................................................................................................................................GAAACGTCTTTTCAACATGATGAATGATCTGCCAACAATATATGAAGTTGTTACTGGAGTGGCCAAGAAGAGAGTAAAGGATAAATCAACAGTTTCAAATCACAGCAGCAACAAGTCAAAATCAAATTCTAAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAATACTCAAAGCCTCAAGTAAAAGATGAGGATGATGGATTTGATGAGGAAGAAGAAGATGAACATGGCGACACTCTGTGTGGTGCATGTGGTGAGAACTATGCTTCAGATGAATTCTGGATTTTCTGTGACATGTGCGAGAGGTGGTTCCATGGAAACTGTGTGAAGATCACCCCTGCCAAGGCCGAGCATATAAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGGATACGCCCATGACATCCCCTATCAGATATGTGCTGAGTTCCACAACTTGTAATTGTTCATGTTGAGCTCAGCTCACTGCCATCTTACAAATATCAGTAAGGCATGTGTAGTCAGAGTCCTAGTCTCTTATGTTTATCAGGGGGCTTAACTAGTTTAGTTCCCTCAAGACACCCTTTTATTCAACTCTAAACAATTGGATATTAAATGCCTAACCTTTCAGTATCAAATGCCTACTAAACGCAGTTCGTCTGAAACATATGTTGCACCTGTAGTTTTTGGGGGCTCCTTGTTTGATCATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221555" ref_strand="+" ref_description="SGN-E221555 [cLEL-10-N1](-)">
      <seq>ctggattttctgtgacatgtgcgagaggtggttccatggaaactgtgtgaagatcacccctgccaaggcccagcatataaagcagtacaaatgcccttcatgcagcaacaagaggattcgcccatgacatcccctatcagatatgtgctgagttccacaacttgtaattgttcatgttgagctcagctcactgccatcttacaaatatcagtaaggcatgtgtagtcagagtcctagtctcttatgtttatcagggtgcttaactagtttagttccctcaagacacccttttattcaactctaaacaattggatattagatgcataaactttcagtatcaaatgctaactaaacgcagttcgtctgaagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="16335" stop="15363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16035" g_stop="15666" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="388"/>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E221555" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16035" e_stop="15666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATTTTCTGTGACATGTGCGAGAGGTGGTTCCATGGAAACTGTGTGAAGATCACCCCTGCCAAGGCCGAGCATATAAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGGATACGCCCATGACATCCCCTATCAGATATGTGCTGAGTTCCACAACTTGTAATTGTTCATGTTGAGCTCAGCTCACTGCCATCTTACAAATATCAGTAAGGCATGTGTAGTCAGAGTCCTAGTCTCTTATGTTTATCAGGGTGCTTAACTAGTTTAGTTCCCTCAAGACACCCTTTTATTCAACTCTAAACAATTGGATATTAGATGCATAAACTTTCAGTATCAAATGCTAACTAAACGCAGTTCGTCTGAAGC</genome_strand>
        <mrna_strand>CTGGATTTTCTGTGACATGTGCGAGAGGTGGTTCCATGGAAACTGTGTGAAGATCACCCCTGCCAAGGCCCAGCATATAAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGGATTCGCCCATGACATCCCCTATCAGATATGTGCTGAGTTCCACAACTTGTAATTGTTCATGTTGAGCTCAGCTCACTGCCATCTTACAAATATCAGTAAGGCATGTGTAGTCAGAGTCCTAGTCTCTTATGTTTATCAGGGTGCTTAACTAGTTTAGTTCCCTCAAGACACCCTTTTATTCAACTCTAAACAATTGGATATTAGATGCATAAACTTTCAGTATCAAATGCTAACTAAACGCAGTTCGTCTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240391" ref_strand="+" ref_description="SGN-E240391 [cLED-25-F23]">
      <seq>gaagttgttactggagtggccaagaagagagtaaaggataaatcaacagtttcaaatcacagcagcaacaagtcaaaatcaaattctaaagcgggtaaatactcaaagcctcaagtaaaagatgaggatgatggatttgatgaggaagaagaagatgaacatggcgacactctgtgtggtgcatgtggtgagaactatgcttcagatgaattctggattttctgtgacatgtgcgagaggtggttccatggaaactgtgtgaagatcacccctgccaaggccgagcatataaagcagtacaaatgcccttcatgcagcaacaagaggatacgcccatgacatcccctatcagatatgtgctgagttccacaacttgtaattgttcatgttgagctcagctcactgccatcttacaaatatcagtaaggcatgtgtagtcagagtcctagtctcttatgtttatcanggtgcttaactagtttagttccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="17881" stop="15457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17581" g_stop="17489" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17488" i_stop="16155" i_length="1334">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16154" g_stop="15757" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="491" r_length="398" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E240391" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17581" e_stop="17489"/>
          <exon e_start="16154" e_stop="15757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGTTACTGGAGTGGCCAAGAAGAGAGTAAAGGATAAATCAACAGTTTCAAATCACAGCAGCAACAAGTCAAAATCAAATTCTAAAGCGGTACTGTTGAAAACCTCTCCAGTCCCCAATCCTTCTCTCTTCTCTCAAATAGATGTTTTTCTTGGATAACAGTAGCTGTGCAGTAGTGTTCAAAGGATTCCCTTTGGACAGTATTTAGCTGAAAACCTTCAGCTTTAGGACATTGCCACTGAATTCTTTCCTAAATTTATGTTTGTCAATCTAAGATATGGTCAATGAATCACTAGATGGATCCTCTCTGATTTTGAGCCATGGTTCAGATTTCAATCATCCACACCCATTTTGAATTATAAATGTGTATGATGACTCTCGACAGCAGTAAGTGGCATATTTAGTGATGTTTTGCTATTGTCATAGAAGTTTAATAACATTGAGAGGTAGAAATCAGGAAAGTGAAGCATTTGTATAATGTTCTCCTACAGTGGAAAACTAATCTTTCTGCCCTGTTATAGTATAGGAGTTCAAACGGGCCTCCTAAGTTGATATATTGTTGATTTGTCATTTTCTTGTATAATTGCTTACCTTGGTGTTCGGTGTAAAAACAGAACAGGCTTGCGTCTATGCATTTCTGGGCAGGTCACGTAATGGTTACCCCGTTTCTAGTTTGAGGAAGGCTTATTAGTCAGTTAAAAGTGATTTGAACTATAGTAATTACAATTGTGTTTATGCTTAAGTTTGATAGAAGAGGCTTTTTAGATGCCTAGGTACTAGGGTGAAGTCAATGCTGGATAGAAGAGGTATTGTGTAAGGTAAACTATGAGATTCCTATGAAGCCTTAGTGTTGTGTTATTATTATTAATCTATCATTTCTCCTATGTAACTTCATTCAATGTTTTATGTCTACCTCAACTCCTGCAGCTGCTTCATCATTGGCCTTTTTGCATAAATTGATTCTCTATCTAAAATTATTTGTGATTTTGGTGCTGCTGTTGTGCAACATTTTACACTTGATTTTTCTTTGCACTACGTTTGTACATTTTGGTTGTCTTTAGTGAATTATATCGAACGGCTTTGAAAAATAAACCTTTCTTCTCAAAAGAAATAAATAAAATGAACTTGTGCCGTCTTGCAGTTGCTTGTGCTAAGTTTACTGTCTTCTGAAGTATCCTCTTTTAAACTTGTCACTGGGTATCTTGTTGTATCATCATCTAGACTAGATGTTACTGCATCTACCTCATTGTCATTGTGTCTATTTCAATGCACTAAGCCATATTCCTCTAACTAAATTCAGTATCATATACCCTGTATCATTATGCCTCTAATGTGTTGACATCTTAGTTATAGATCCATGCTTCATTGCTTTTTTTCCATGCATGGCGCAGCAGACATCCACATTGTTTTATTTTAAATCTCAGGGTAAATACTCAAAGCCTCAAGTAAAAGATGAGGATGATGGATTTGATGAGGAAGAAGAAGATGAACATGGCGACACTCTGTGTGGTGCATGTGGTGAGAACTATGCTTCAGATGAATTCTGGATTTTCTGTGACATGTGCGAGAGGTGGTTCCATGGAAACTGTGTGAAGATCACCCCTGCCAAGGCCGAGCATATAAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGGATACGCCCATGACATCCCCTATCAGATATGTGCTGAGTTCCACAACTTGTAATTGTTCATGTTGAGCTCAGCTCACTGCCATCTTACAAATATCAGTAAGGCATGTGTAGTCAGAGTCCTAGTCTCTTATGTTTATCAGGGTGCTTAACTAGTTTAGTTCCCTC</genome_strand>
        <mrna_strand>GAAGTTGTTACTGGAGTGGCCAAGAAGAGAGTAAAGGATAAATCAACAGTTTCAAATCACAGCAGCAACAAGTCAAAATCAAATTCTAAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAATACTCAAAGCCTCAAGTAAAAGATGAGGATGATGGATTTGATGAGGAAGAAGAAGATGAACATGGCGACACTCTGTGTGGTGCATGTGGTGAGAACTATGCTTCAGATGAATTCTGGATTTTCTGTGACATGTGCGAGAGGTGGTTCCATGGAAACTGTGTGAAGATCACCCCTGCCAAGGCCGAGCATATAAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGGATACGCCCATGACATCCCCTATCAGATATGTGCTGAGTTCCACAACTTGTAATTGTTCATGTTGAGCTCAGCTCACTGCCATCTTACAAATATCAGTAAGGCATGTGTAGTCAGAGTCCTAGTCTCTTATGTTTATCANGGTGCTTAACTAGTTTAGTTCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708057" ref_strand="+" ref_description="SGN-E708057 [FA34DA01]">
      <seq>catctattgttaagatggaaggaggtgcacagtacaatcctcgcaccgtggaagaagtttttaaggattttaccggccgtcgaaccggcatgatcaaagccctcaccactgatgtggaggatttttatcatcaatgtgaccctgaaaaggaaaatctctgcctctatggatatccaagtgagcagtgggaagtcaatttgccagctgaggaggtgcctccagagcttccagagccagcactaggtataaacttcgctagagatgggatgcaagaaaaggaatggttagctctagttgctgtacatagtgatgcatggctactctctgtttccttctattttggtgccagattcggctttgatagagctgacaggaaacgtcttttcaacatgatgaatgatctgccaacaatatatgaagttgttactggagtggccaagaagagagtaaaggataaatcaacagtttcaaatcacagcagcaacaagtcaaaatcaaattctaaagcgggtaaatactcaaagcctcaagtaaaagatgaggatgatggatttgatgaggaagaagaagatgaacatggcgacactctgtgtggtgcatgtggtgagaactatgcttcagatgaattctggattttctgtgacatgtgcgagaggtggttccatggaaactgtgtgaagatcacccctgccaaggccgagcatataaagcagtacaaatgcccttcatgcagcaacaagaggatacgcccatgacatcccctatcagatatgtgctgagttccacaacttgtaattgttcatgttgagctcagctcactgccatcttacaaatatcagtaaggcatgtgtagtcagagtcctagtctctttatgttatcagggtgcttaactagtttagttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="19942" stop="15460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19643" g_stop="19533" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19532" i_stop="19455" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19454" g_stop="19422" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="144" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19421" i_stop="18235" i_length="1187">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18234" g_stop="18006" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="373" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18005" i_stop="17625" i_length="381">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17624" g_stop="17489" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="509" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17488" i_stop="16155" i_length="1334">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16154" g_stop="15760" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="904" r_length="395" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E708057" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19643" e_stop="19533"/>
          <exon e_start="19454" e_stop="19422"/>
          <exon e_start="18234" e_stop="18006"/>
          <exon e_start="17624" e_stop="17489"/>
          <exon e_start="16154" e_stop="15760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCATTGTTAAGATGGAAGGAGGTGCACAGTACAATCCTCGCACCGTGGAAGAAGTTTTTAAGGATTTTACCGGCCGTCGAACCGGCATGATCAAAGCCCTCACCACTGGTATCGACAATTTCCTGTTTTGCTGCTCTGTTTTGTAAGTTTATGCTACATTTCATCATTTTTCTCTTGCTTTTGCAGATGTGGAGGATTTTTATCATCAATGTGACCCTGGTTAGTTAGAGATCTTTACTTTCTTTTTCCAATTTACATTTCCGCCTTTGATAAAATTTTTCTCTTCCGTTGCCTGTATGTTGCTTTCTGTGTTTGTTCTCCAGTGTTTCGCTAATTTTTACCGGATTTGGTTGGTTTTCAGTTTTCTTGTTATTTGCTAGCTCTTTTTCACATTTTACCCAACTGATTACTGTTTCTGATGGCGACCCAAATGGAACCTTTTTTATTTGAGATAAAAATAATCAATCAAATTTTCGGGTTTTGGGTCAAAGGACAGAAGAATGTAGCGCCTTCTTTTTCTTTTCTTTCCAATTATAAGCAATTTAATAAAAATTAAACTACTGGATAATCTGTTTTTTTTTTTTTGCTGTATTGTCCTTTGTCCTGTTTGTATAGACATGGTTTTCTTTTTTGTTGCGTGACTTTTAACTGAGATTTTGTTTTTACTGGTAAATATCTCTTCCAATTCAAGATTTTAGAGTTGTTTAATGGGGTGTTGGTTTTCTGCTTGCGTCTAGAGCTGTTCATAATGCTTCAAGAACACTACTCTCTCTGTTATGTACTGTACCGTGTGCTTAATGTGAATTCATTCTACTTTAAATGGAGATGTTTCAGACATATGAGTTGTGGGAGAAATATCTTATTTAGATTGTTGGTTAAGCTTTCTGCCCAAACTGAAATTGCCATGTTTACCGGTTGGGTGGACTTGACCTGGAGATGAGTGAATAGTAACTGTGGTCTTATGCTCTTACTGTATGTTGTCCCTCACAATATGATTCTAGCAATCAATCCCCAGATGTTTTAAGTTTTCATAGCTTGGAGGATATTGGTCTAACTTCATATACAGGCTTCATTTTTTCGCTTTGATTGAGTTGCTATTGCAGATGTAGGATCATTTTCTGTCTGCTCCTTTTTTGCTTACTGACCAGCTTTGTTATTGATTTAAGTCTCAAATTACTAATTATCATTTCGTGAATTCTCATCCAACTTAATAAATTCTGTGACAAAAGATTGAAGCTTGTGCCTGATTTTGTCCTTAGAATACTTTTTGCATGATAAAGATATTGGTGGCGCCAATGTTGTATTCTGACTTCGCTGTGCTTAGATGCTGTTTCTTATTGAACAAGTGTTTTTCTGATTGTGATTAGTCTTTGTTTACTGTCTCTTTATATTTGGATACCTTGCAGAAAAGGAAAATCTCTGCCTCTATGGATATCCAAGTGAGCAGTGGGAAGTCAATTTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCACTAGGTATAAACTTCGCTAGAGATGGGATGCAAGAAAAGGAATGGTTAGCTCTAGTTGCTGTACATAGTGATGCATGGCTACTCTCTGTTTCCTTCTATTTTGGTGCCAGATTCGGCTTTGATAGAGCTGACAGGTAAACTTGATTCTACAGCAATATAAGAAAATTGTTTCTTGGTTATTTGTAATTTTAATAGGTCACCTTTCAAGTGATTTATTTGTTTATATTTTTTTTTCCTTTTTAATCATATCAGAATTGTGTCTTTTCTTCAAATATCTTGCTTTGAATCATAAATAGTTGCGAACAGCATACAAGTCTTTGCTGTGTCATTTTGTAAAGCATTCTGGAAGTATGCTTATAATTACACCTTGTCAGATGTCAAAGCTTGGAGGAATTGTCCCAACAGGCATATGTGTGATTTCTTTGATGGAGAAAAACAATTATTTCCTTCATTTAGAGTCCTTAGTATGGGATATTTTTTCACTTCACTGAATTCTTTTGATCTCTTTCATCTAGGAAACGTCTTTTCAACATGATGAATGATCTGCCAACAATATATGAAGTTGTTACTGGAGTGGCCAAGAAGAGAGTAAAGGATAAATCAACAGTTTCAAATCACAGCAGCAACAAGTCAAAATCAAATTCTAAAGCGGTACTGTTGAAAACCTCTCCAGTCCCCAATCCTTCTCTCTTCTCTCAAATAGATGTTTTTCTTGGATAACAGTAGCTGTGCAGTAGTGTTCAAAGGATTCCCTTTGGACAGTATTTAGCTGAAAACCTTCAGCTTTAGGACATTGCCACTGAATTCTTTCCTAAATTTATGTTTGTCAATCTAAGATATGGTCAATGAATCACTAGATGGATCCTCTCTGATTTTGAGCCATGGTTCAGATTTCAATCATCCACACCCATTTTGAATTATAAATGTGTATGATGACTCTCGACAGCAGTAAGTGGCATATTTAGTGATGTTTTGCTATTGTCATAGAAGTTTAATAACATTGAGAGGTAGAAATCAGGAAAGTGAAGCATTTGTATAATGTTCTCCTACAGTGGAAAACTAATCTTTCTGCCCTGTTATAGTATAGGAGTTCAAACGGGCCTCCTAAGTTGATATATTGTTGATTTGTCATTTTCTTGTATAATTGCTTACCTTGGTGTTCGGTGTAAAAACAGAACAGGCTTGCGTCTATGCATTTCTGGGCAGGTCACGTAATGGTTACCCCGTTTCTAGTTTGAGGAAGGCTTATTAGTCAGTTAAAAGTGATTTGAACTATAGTAATTACAATTGTGTTTATGCTTAAGTTTGATAGAAGAGGCTTTTTAGATGCCTAGGTACTAGGGTGAAGTCAATGCTGGATAGAAGAGGTATTGTGTAAGGTAAACTATGAGATTCCTATGAAGCCTTAGTGTTGTGTTATTATTATTAATCTATCATTTCTCCTATGTAACTTCATTCAATGTTTTATGTCTACCTCAACTCCTGCAGCTGCTTCATCATTGGCCTTTTTGCATAAATTGATTCTCTATCTAAAATTATTTGTGATTTTGGTGCTGCTGTTGTGCAACATTTTACACTTGATTTTTCTTTGCACTACGTTTGTACATTTTGGTTGTCTTTAGTGAATTATATCGAACGGCTTTGAAAAATAAACCTTTCTTCTCAAAAGAAATAAATAAAATGAACTTGTGCCGTCTTGCAGTTGCTTGTGCTAAGTTTACTGTCTTCTGAAGTATCCTCTTTTAAACTTGTCACTGGGTATCTTGTTGTATCATCATCTAGACTAGATGTTACTGCATCTACCTCATTGTCATTGTGTCTATTTCAATGCACTAAGCCATATTCCTCTAACTAAATTCAGTATCATATACCCTGTATCATTATGCCTCTAATGTGTTGACATCTTAGTTATAGATCCATGCTTCATTGCTTTTTTTCCATGCATGGCGCAGCAGACATCCACATTGTTTTATTTTAAATCTCAGGGTAAATACTCAAAGCCTCAAGTAAAAGATGAGGATGATGGATTTGATGAGGAAGAAGAAGATGAACATGGCGACACTCTGTGTGGTGCATGTGGTGAGAACTATGCTTCAGATGAATTCTGGATTTTCTGTGACATGTGCGAGAGGTGGTTCCATGGAAACTGTGTGAAGATCACCCCTGCCAAGGCCGAGCATATAAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGGATACGCCCATGACATCCCCTATCAGATATGTGCTGAGTTCCACAACTTGTAATTGTTCATGTTGAGCTCAGCTCACTGCCATCTTACAAATATCAGTAAGGCATGTGTAGTCAGAGTCCTAGTCTCTTATGTTTATCAGGGTGCTTAACTAGTTTAGTTCC</genome_strand>
        <mrna_strand>CATCTATTGTTAAGATGGAAGGAGGTGCACAGTACAATCCTCGCACCGTGGAAGAAGTTTTTAAGGATTTTACCGGCCGTCGAACCGGCATGATCAAAGCCCTCACCACTG..............................................................................ATGTGGAGGATTTTTATCATCAATGTGACCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAAAATCTCTGCCTCTATGGATATCCAAGTGAGCAGTGGGAAGTCAATTTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCACTAGGTATAAACTTCGCTAGAGATGGGATGCAAGAAAAGGAATGGTTAGCTCTAGTTGCTGTACATAGTGATGCATGGCTACTCTCTGTTTCCTTCTATTTTGGTGCCAGATTCGGCTTTGATAGAGCTGACAG.............................................................................................................................................................................................................................................................................................................................................................................................GAAACGTCTTTTCAACATGATGAATGATCTGCCAACAATATATGAAGTTGTTACTGGAGTGGCCAAGAAGAGAGTAAAGGATAAATCAACAGTTTCAAATCACAGCAGCAACAAGTCAAAATCAAATTCTAAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAATACTCAAAGCCTCAAGTAAAAGATGAGGATGATGGATTTGATGAGGAAGAAGAAGATGAACATGGCGACACTCTGTGTGGTGCATGTGGTGAGAACTATGCTTCAGATGAATTCTGGATTTTCTGTGACATGTGCGAGAGGTGGTTCCATGGAAACTGTGTGAAGATCACCCCTGCCAAGGCCGAGCATATAAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGGATACGCCCATGACATCCCCTATCAGATATGTGCTGAGTTCCACAACTTGTAATTGTTCATGTTGAGCTCAGCTCACTGCCATCTTACAAATATCAGTAAGGCATGTGTAGTCAGAGTCCTAGTCTCTTTATGTTATCAGGGTGCTTAACTAGTTTAGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698364" ref_strand="+" ref_description="SGN-E698364 [FA06AC11]">
      <seq>cattgttaagatggaaggaggtgcacagtaccatcctcgcaccgtggaagaagtttttaaggattttaccggccgtcgaaccggcatgatcaaagccctcaccactgatgtggaggatttttatcatcaatgtgaccctgaaaaggaaaatctctgcctctatggatatccaagtgagcagtgggaagtcaatttgccagctgaggaggtgcctccagagcttccagagccagcactaggtataaacttcgctagagatgggatgcaagaaaaggaatggttagctctagttgctgtacatagtgatgcatggctactctctgtttccttctattttggtgccagattcggctttgatagagctgacaggaaacgtcttttcaacatgatgaatgatctgccaacaatatatgaagttgttactggagtggccaagaagagagtaaaggataaatcaacagtttcaaatcacagcagcaacaagtcaaaatcaaattctaaagcgggtaaatactcaaagcctcaagtaaaagatgaggatgatggatttgatgaggaagaagaagatgaacatggcgacactctgtgtggtgcatgtggtgagaactatgcttcagatgaattctggattttctgtgacatgtgcgagaggtggttccatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="19939" stop="15697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19639" g_stop="19533" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19532" i_stop="19455" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19454" g_stop="19422" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="140" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19421" i_stop="18235" i_length="1187">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18234" g_stop="18006" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="369" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18005" i_stop="17625" i_length="381">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17624" g_stop="17489" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="505" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17488" i_stop="16155" i_length="1334">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16154" g_stop="15997" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="663" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E698364" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19639" e_stop="19533"/>
          <exon e_start="19454" e_stop="19422"/>
          <exon e_start="18234" e_stop="18006"/>
          <exon e_start="17624" e_stop="17489"/>
          <exon e_start="16154" e_stop="15997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTTAAGATGGAAGGAGGTGCACAGTACAATCCTCGCACCGTGGAAGAAGTTTTTAAGGATTTTACCGGCCGTCGAACCGGCATGATCAAAGCCCTCACCACTGGTATCGACAATTTCCTGTTTTGCTGCTCTGTTTTGTAAGTTTATGCTACATTTCATCATTTTTCTCTTGCTTTTGCAGATGTGGAGGATTTTTATCATCAATGTGACCCTGGTTAGTTAGAGATCTTTACTTTCTTTTTCCAATTTACATTTCCGCCTTTGATAAAATTTTTCTCTTCCGTTGCCTGTATGTTGCTTTCTGTGTTTGTTCTCCAGTGTTTCGCTAATTTTTACCGGATTTGGTTGGTTTTCAGTTTTCTTGTTATTTGCTAGCTCTTTTTCACATTTTACCCAACTGATTACTGTTTCTGATGGCGACCCAAATGGAACCTTTTTTATTTGAGATAAAAATAATCAATCAAATTTTCGGGTTTTGGGTCAAAGGACAGAAGAATGTAGCGCCTTCTTTTTCTTTTCTTTCCAATTATAAGCAATTTAATAAAAATTAAACTACTGGATAATCTGTTTTTTTTTTTTTGCTGTATTGTCCTTTGTCCTGTTTGTATAGACATGGTTTTCTTTTTTGTTGCGTGACTTTTAACTGAGATTTTGTTTTTACTGGTAAATATCTCTTCCAATTCAAGATTTTAGAGTTGTTTAATGGGGTGTTGGTTTTCTGCTTGCGTCTAGAGCTGTTCATAATGCTTCAAGAACACTACTCTCTCTGTTATGTACTGTACCGTGTGCTTAATGTGAATTCATTCTACTTTAAATGGAGATGTTTCAGACATATGAGTTGTGGGAGAAATATCTTATTTAGATTGTTGGTTAAGCTTTCTGCCCAAACTGAAATTGCCATGTTTACCGGTTGGGTGGACTTGACCTGGAGATGAGTGAATAGTAACTGTGGTCTTATGCTCTTACTGTATGTTGTCCCTCACAATATGATTCTAGCAATCAATCCCCAGATGTTTTAAGTTTTCATAGCTTGGAGGATATTGGTCTAACTTCATATACAGGCTTCATTTTTTCGCTTTGATTGAGTTGCTATTGCAGATGTAGGATCATTTTCTGTCTGCTCCTTTTTTGCTTACTGACCAGCTTTGTTATTGATTTAAGTCTCAAATTACTAATTATCATTTCGTGAATTCTCATCCAACTTAATAAATTCTGTGACAAAAGATTGAAGCTTGTGCCTGATTTTGTCCTTAGAATACTTTTTGCATGATAAAGATATTGGTGGCGCCAATGTTGTATTCTGACTTCGCTGTGCTTAGATGCTGTTTCTTATTGAACAAGTGTTTTTCTGATTGTGATTAGTCTTTGTTTACTGTCTCTTTATATTTGGATACCTTGCAGAAAAGGAAAATCTCTGCCTCTATGGATATCCAAGTGAGCAGTGGGAAGTCAATTTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCACTAGGTATAAACTTCGCTAGAGATGGGATGCAAGAAAAGGAATGGTTAGCTCTAGTTGCTGTACATAGTGATGCATGGCTACTCTCTGTTTCCTTCTATTTTGGTGCCAGATTCGGCTTTGATAGAGCTGACAGGTAAACTTGATTCTACAGCAATATAAGAAAATTGTTTCTTGGTTATTTGTAATTTTAATAGGTCACCTTTCAAGTGATTTATTTGTTTATATTTTTTTTTCCTTTTTAATCATATCAGAATTGTGTCTTTTCTTCAAATATCTTGCTTTGAATCATAAATAGTTGCGAACAGCATACAAGTCTTTGCTGTGTCATTTTGTAAAGCATTCTGGAAGTATGCTTATAATTACACCTTGTCAGATGTCAAAGCTTGGAGGAATTGTCCCAACAGGCATATGTGTGATTTCTTTGATGGAGAAAAACAATTATTTCCTTCATTTAGAGTCCTTAGTATGGGATATTTTTTCACTTCACTGAATTCTTTTGATCTCTTTCATCTAGGAAACGTCTTTTCAACATGATGAATGATCTGCCAACAATATATGAAGTTGTTACTGGAGTGGCCAAGAAGAGAGTAAAGGATAAATCAACAGTTTCAAATCACAGCAGCAACAAGTCAAAATCAAATTCTAAAGCGGTACTGTTGAAAACCTCTCCAGTCCCCAATCCTTCTCTCTTCTCTCAAATAGATGTTTTTCTTGGATAACAGTAGCTGTGCAGTAGTGTTCAAAGGATTCCCTTTGGACAGTATTTAGCTGAAAACCTTCAGCTTTAGGACATTGCCACTGAATTCTTTCCTAAATTTATGTTTGTCAATCTAAGATATGGTCAATGAATCACTAGATGGATCCTCTCTGATTTTGAGCCATGGTTCAGATTTCAATCATCCACACCCATTTTGAATTATAAATGTGTATGATGACTCTCGACAGCAGTAAGTGGCATATTTAGTGATGTTTTGCTATTGTCATAGAAGTTTAATAACATTGAGAGGTAGAAATCAGGAAAGTGAAGCATTTGTATAATGTTCTCCTACAGTGGAAAACTAATCTTTCTGCCCTGTTATAGTATAGGAGTTCAAACGGGCCTCCTAAGTTGATATATTGTTGATTTGTCATTTTCTTGTATAATTGCTTACCTTGGTGTTCGGTGTAAAAACAGAACAGGCTTGCGTCTATGCATTTCTGGGCAGGTCACGTAATGGTTACCCCGTTTCTAGTTTGAGGAAGGCTTATTAGTCAGTTAAAAGTGATTTGAACTATAGTAATTACAATTGTGTTTATGCTTAAGTTTGATAGAAGAGGCTTTTTAGATGCCTAGGTACTAGGGTGAAGTCAATGCTGGATAGAAGAGGTATTGTGTAAGGTAAACTATGAGATTCCTATGAAGCCTTAGTGTTGTGTTATTATTATTAATCTATCATTTCTCCTATGTAACTTCATTCAATGTTTTATGTCTACCTCAACTCCTGCAGCTGCTTCATCATTGGCCTTTTTGCATAAATTGATTCTCTATCTAAAATTATTTGTGATTTTGGTGCTGCTGTTGTGCAACATTTTACACTTGATTTTTCTTTGCACTACGTTTGTACATTTTGGTTGTCTTTAGTGAATTATATCGAACGGCTTTGAAAAATAAACCTTTCTTCTCAAAAGAAATAAATAAAATGAACTTGTGCCGTCTTGCAGTTGCTTGTGCTAAGTTTACTGTCTTCTGAAGTATCCTCTTTTAAACTTGTCACTGGGTATCTTGTTGTATCATCATCTAGACTAGATGTTACTGCATCTACCTCATTGTCATTGTGTCTATTTCAATGCACTAAGCCATATTCCTCTAACTAAATTCAGTATCATATACCCTGTATCATTATGCCTCTAATGTGTTGACATCTTAGTTATAGATCCATGCTTCATTGCTTTTTTTCCATGCATGGCGCAGCAGACATCCACATTGTTTTATTTTAAATCTCAGGGTAAATACTCAAAGCCTCAAGTAAAAGATGAGGATGATGGATTTGATGAGGAAGAAGAAGATGAACATGGCGACACTCTGTGTGGTGCATGTGGTGAGAACTATGCTTCAGATGAATTCTGGATTTTCTGTGACATGTGCGAGAGGTGGTTCCATGG</genome_strand>
        <mrna_strand>CATTGTTAAGATGGAAGGAGGTGCACAGTACCATCCTCGCACCGTGGAAGAAGTTTTTAAGGATTTTACCGGCCGTCGAACCGGCATGATCAAAGCCCTCACCACTG..............................................................................ATGTGGAGGATTTTTATCATCAATGTGACCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAAAATCTCTGCCTCTATGGATATCCAAGTGAGCAGTGGGAAGTCAATTTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCACTAGGTATAAACTTCGCTAGAGATGGGATGCAAGAAAAGGAATGGTTAGCTCTAGTTGCTGTACATAGTGATGCATGGCTACTCTCTGTTTCCTTCTATTTTGGTGCCAGATTCGGCTTTGATAGAGCTGACAG.............................................................................................................................................................................................................................................................................................................................................................................................GAAACGTCTTTTCAACATGATGAATGATCTGCCAACAATATATGAAGTTGTTACTGGAGTGGCCAAGAAGAGAGTAAAGGATAAATCAACAGTTTCAAATCACAGCAGCAACAAGTCAAAATCAAATTCTAAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAATACTCAAAGCCTCAAGTAAAAGATGAGGATGATGGATTTGATGAGGAAGAAGAAGATGAACATGGCGACACTCTGTGTGGTGCATGTGGTGAGAACTATGCTTCAGATGAATTCTGGATTTTCTGTGACATGTGCGAGAGGTGGTTCCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343171" ref_strand="+" ref_description="SGN-E343171 [cTOF-17-H1]">
      <seq>aaggaggtgcacagtacaatcctcgcaccgtggaagaagtttttaaggattttaccggccgtcgaaccggcatgatcaaagccctcaccactgatgtggaggatttttatcatcaatgtgaccctgaaaaggaaaatctctgcctctatggatatccaagtgagcagtgggaagtcaatttgccagctgaggaggtgcctccagagcttccagagccagcactaggtataaacttcgctagagatgggatgcaagaaaaggaatggttagctctagttgctgtacatagtgatgcatggctactctctgtttccttctattttggtgccagattcggctttgatagagctgacaggaaacgtcttttcaacatgatgaatgatctgccaacaatatatgaagttgttactggagtggccaagaagagagtaaaggataaatcaacagtttcaaatcacagcagcaacaagtcaaaatcaaattctaaagcgggtaaatactcaaagcctcaagtaaaagatgaggatgatggatttgatgaggaagaagaagatgaacatggcgacactctgtgtggtgcatgtggtgagaactatgcttcagatgaattctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="19925" stop="15732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19625" g_stop="19533" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19532" i_stop="19455" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19454" g_stop="19422" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="126" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19421" i_stop="18235" i_length="1187">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18234" g_stop="18006" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="355" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18005" i_stop="17625" i_length="381">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17624" g_stop="17489" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="491" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17488" i_stop="16155" i_length="1334">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16154" g_stop="16032" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="614" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E343171" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19625" e_stop="19533"/>
          <exon e_start="19454" e_stop="19422"/>
          <exon e_start="18234" e_stop="18006"/>
          <exon e_start="17624" e_stop="17489"/>
          <exon e_start="16154" e_stop="16032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGGTGCACAGTACAATCCTCGCACCGTGGAAGAAGTTTTTAAGGATTTTACCGGCCGTCGAACCGGCATGATCAAAGCCCTCACCACTGGTATCGACAATTTCCTGTTTTGCTGCTCTGTTTTGTAAGTTTATGCTACATTTCATCATTTTTCTCTTGCTTTTGCAGATGTGGAGGATTTTTATCATCAATGTGACCCTGGTTAGTTAGAGATCTTTACTTTCTTTTTCCAATTTACATTTCCGCCTTTGATAAAATTTTTCTCTTCCGTTGCCTGTATGTTGCTTTCTGTGTTTGTTCTCCAGTGTTTCGCTAATTTTTACCGGATTTGGTTGGTTTTCAGTTTTCTTGTTATTTGCTAGCTCTTTTTCACATTTTACCCAACTGATTACTGTTTCTGATGGCGACCCAAATGGAACCTTTTTTATTTGAGATAAAAATAATCAATCAAATTTTCGGGTTTTGGGTCAAAGGACAGAAGAATGTAGCGCCTTCTTTTTCTTTTCTTTCCAATTATAAGCAATTTAATAAAAATTAAACTACTGGATAATCTGTTTTTTTTTTTTTGCTGTATTGTCCTTTGTCCTGTTTGTATAGACATGGTTTTCTTTTTTGTTGCGTGACTTTTAACTGAGATTTTGTTTTTACTGGTAAATATCTCTTCCAATTCAAGATTTTAGAGTTGTTTAATGGGGTGTTGGTTTTCTGCTTGCGTCTAGAGCTGTTCATAATGCTTCAAGAACACTACTCTCTCTGTTATGTACTGTACCGTGTGCTTAATGTGAATTCATTCTACTTTAAATGGAGATGTTTCAGACATATGAGTTGTGGGAGAAATATCTTATTTAGATTGTTGGTTAAGCTTTCTGCCCAAACTGAAATTGCCATGTTTACCGGTTGGGTGGACTTGACCTGGAGATGAGTGAATAGTAACTGTGGTCTTATGCTCTTACTGTATGTTGTCCCTCACAATATGATTCTAGCAATCAATCCCCAGATGTTTTAAGTTTTCATAGCTTGGAGGATATTGGTCTAACTTCATATACAGGCTTCATTTTTTCGCTTTGATTGAGTTGCTATTGCAGATGTAGGATCATTTTCTGTCTGCTCCTTTTTTGCTTACTGACCAGCTTTGTTATTGATTTAAGTCTCAAATTACTAATTATCATTTCGTGAATTCTCATCCAACTTAATAAATTCTGTGACAAAAGATTGAAGCTTGTGCCTGATTTTGTCCTTAGAATACTTTTTGCATGATAAAGATATTGGTGGCGCCAATGTTGTATTCTGACTTCGCTGTGCTTAGATGCTGTTTCTTATTGAACAAGTGTTTTTCTGATTGTGATTAGTCTTTGTTTACTGTCTCTTTATATTTGGATACCTTGCAGAAAAGGAAAATCTCTGCCTCTATGGATATCCAAGTGAGCAGTGGGAAGTCAATTTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCACTAGGTATAAACTTCGCTAGAGATGGGATGCAAGAAAAGGAATGGTTAGCTCTAGTTGCTGTACATAGTGATGCATGGCTACTCTCTGTTTCCTTCTATTTTGGTGCCAGATTCGGCTTTGATAGAGCTGACAGGTAAACTTGATTCTACAGCAATATAAGAAAATTGTTTCTTGGTTATTTGTAATTTTAATAGGTCACCTTTCAAGTGATTTATTTGTTTATATTTTTTTTTCCTTTTTAATCATATCAGAATTGTGTCTTTTCTTCAAATATCTTGCTTTGAATCATAAATAGTTGCGAACAGCATACAAGTCTTTGCTGTGTCATTTTGTAAAGCATTCTGGAAGTATGCTTATAATTACACCTTGTCAGATGTCAAAGCTTGGAGGAATTGTCCCAACAGGCATATGTGTGATTTCTTTGATGGAGAAAAACAATTATTTCCTTCATTTAGAGTCCTTAGTATGGGATATTTTTTCACTTCACTGAATTCTTTTGATCTCTTTCATCTAGGAAACGTCTTTTCAACATGATGAATGATCTGCCAACAATATATGAAGTTGTTACTGGAGTGGCCAAGAAGAGAGTAAAGGATAAATCAACAGTTTCAAATCACAGCAGCAACAAGTCAAAATCAAATTCTAAAGCGGTACTGTTGAAAACCTCTCCAGTCCCCAATCCTTCTCTCTTCTCTCAAATAGATGTTTTTCTTGGATAACAGTAGCTGTGCAGTAGTGTTCAAAGGATTCCCTTTGGACAGTATTTAGCTGAAAACCTTCAGCTTTAGGACATTGCCACTGAATTCTTTCCTAAATTTATGTTTGTCAATCTAAGATATGGTCAATGAATCACTAGATGGATCCTCTCTGATTTTGAGCCATGGTTCAGATTTCAATCATCCACACCCATTTTGAATTATAAATGTGTATGATGACTCTCGACAGCAGTAAGTGGCATATTTAGTGATGTTTTGCTATTGTCATAGAAGTTTAATAACATTGAGAGGTAGAAATCAGGAAAGTGAAGCATTTGTATAATGTTCTCCTACAGTGGAAAACTAATCTTTCTGCCCTGTTATAGTATAGGAGTTCAAACGGGCCTCCTAAGTTGATATATTGTTGATTTGTCATTTTCTTGTATAATTGCTTACCTTGGTGTTCGGTGTAAAAACAGAACAGGCTTGCGTCTATGCATTTCTGGGCAGGTCACGTAATGGTTACCCCGTTTCTAGTTTGAGGAAGGCTTATTAGTCAGTTAAAAGTGATTTGAACTATAGTAATTACAATTGTGTTTATGCTTAAGTTTGATAGAAGAGGCTTTTTAGATGCCTAGGTACTAGGGTGAAGTCAATGCTGGATAGAAGAGGTATTGTGTAAGGTAAACTATGAGATTCCTATGAAGCCTTAGTGTTGTGTTATTATTATTAATCTATCATTTCTCCTATGTAACTTCATTCAATGTTTTATGTCTACCTCAACTCCTGCAGCTGCTTCATCATTGGCCTTTTTGCATAAATTGATTCTCTATCTAAAATTATTTGTGATTTTGGTGCTGCTGTTGTGCAACATTTTACACTTGATTTTTCTTTGCACTACGTTTGTACATTTTGGTTGTCTTTAGTGAATTATATCGAACGGCTTTGAAAAATAAACCTTTCTTCTCAAAAGAAATAAATAAAATGAACTTGTGCCGTCTTGCAGTTGCTTGTGCTAAGTTTACTGTCTTCTGAAGTATCCTCTTTTAAACTTGTCACTGGGTATCTTGTTGTATCATCATCTAGACTAGATGTTACTGCATCTACCTCATTGTCATTGTGTCTATTTCAATGCACTAAGCCATATTCCTCTAACTAAATTCAGTATCATATACCCTGTATCATTATGCCTCTAATGTGTTGACATCTTAGTTATAGATCCATGCTTCATTGCTTTTTTTCCATGCATGGCGCAGCAGACATCCACATTGTTTTATTTTAAATCTCAGGGTAAATACTCAAAGCCTCAAGTAAAAGATGAGGATGATGGATTTGATGAGGAAGAAGAAGATGAACATGGCGACACTCTGTGTGGTGCATGTGGTGAGAACTATGCTTCAGATGAATTCTGG</genome_strand>
        <mrna_strand>AAGGAGGTGCACAGTACAATCCTCGCACCGTGGAAGAAGTTTTTAAGGATTTTACCGGCCGTCGAACCGGCATGATCAAAGCCCTCACCACTG..............................................................................ATGTGGAGGATTTTTATCATCAATGTGACCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAAAATCTCTGCCTCTATGGATATCCAAGTGAGCAGTGGGAAGTCAATTTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCACTAGGTATAAACTTCGCTAGAGATGGGATGCAAGAAAAGGAATGGTTAGCTCTAGTTGCTGTACATAGTGATGCATGGCTACTCTCTGTTTCCTTCTATTTTGGTGCCAGATTCGGCTTTGATAGAGCTGACAG.............................................................................................................................................................................................................................................................................................................................................................................................GAAACGTCTTTTCAACATGATGAATGATCTGCCAACAATATATGAAGTTGTTACTGGAGTGGCCAAGAAGAGAGTAAAGGATAAATCAACAGTTTCAAATCACAGCAGCAACAAGTCAAAATCAAATTCTAAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAATACTCAAAGCCTCAAGTAAAAGATGAGGATGATGGATTTGATGAGGAAGAAGAAGATGAACATGGCGACACTCTGTGTGGTGCATGTGGTGAGAACTATGCTTCAGATGAATTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551357" ref_strand="+" ref_description="SGN-E551357 [TUS-55-C21]">
      <seq>ctccaccgcagtaagtggcatatttagtgatgttttgctattgtcatagaagtttaataacattgagaggtagaaatcaggaaagtgaagcatttgtataatgttctcctacagtggaaaactaatctttctgccctgttatagtataggagttcaaacgggcctcctaagttgatatattgttgatttgtcattttcttgtataattgcttaccttggtgttcggtgtaaaaacagaacaggcttgcgtctatgcatttctgggcaggtcacgtaatggttaccccgtttctagtttgaggaaggcttattagtcagttaaaagtgatttgaactatagtaattacaattgtgtttatgcttaagtttgatagaagaggctttttagatgcctaggtactagggtgaagtcaatgctggatagaagaggtattgtgtaaggtaaactatgagattcctatgaagccctagtgttgtgttattattattaatctatcatttctcctatgtaacttcattcaatgttttatgtctacctccactcctgcagctgcttcatcattggcctttttgcataaattgattctctatctaaaattatttgtgattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="17501" stop="16289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17201" g_stop="16589" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E551357" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17201" e_stop="16589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGACAGCAGTAAGTGGCATATTTAGTGATGTTTTGCTATTGTCATAGAAGTTTAATAACATTGAGAGGTAGAAATCAGGAAAGTGAAGCATTTGTATAATGTTCTCCTACAGTGGAAAACTAATCTTTCTGCCCTGTTATAGTATAGGAGTTCAAACGGGCCTCCTAAGTTGATATATTGTTGATTTGTCATTTTCTTGTATAATTGCTTACCTTGGTGTTCGGTGTAAAAACAGAACAGGCTTGCGTCTATGCATTTCTGGGCAGGTCACGTAATGGTTACCCCGTTTCTAGTTTGAGGAAGGCTTATTAGTCAGTTAAAAGTGATTTGAACTATAGTAATTACAATTGTGTTTATGCTTAAGTTTGATAGAAGAGGCTTTTTAGATGCCTAGGTACTAGGGTGAAGTCAATGCTGGATAGAAGAGGTATTGTGTAAGGTAAACTATGAGATTCCTATGAAGCCTTAGTGTTGTGTTATTATTATTAATCTATCATTTCTCCTATGTAACTTCATTCAATGTTTTATGTCTACCTCAACTCCTGCAGCTGCTTCATCATTGGCCTTTTTGCATAAATTGATTCTCTATCTAAAATTATTTGTGATTTTGG</genome_strand>
        <mrna_strand>CTCCACCGCAGTAAGTGGCATATTTAGTGATGTTTTGCTATTGTCATAGAAGTTTAATAACATTGAGAGGTAGAAATCAGGAAAGTGAAGCATTTGTATAATGTTCTCCTACAGTGGAAAACTAATCTTTCTGCCCTGTTATAGTATAGGAGTTCAAACGGGCCTCCTAAGTTGATATATTGTTGATTTGTCATTTTCTTGTATAATTGCTTACCTTGGTGTTCGGTGTAAAAACAGAACAGGCTTGCGTCTATGCATTTCTGGGCAGGTCACGTAATGGTTACCCCGTTTCTAGTTTGAGGAAGGCTTATTAGTCAGTTAAAAGTGATTTGAACTATAGTAATTACAATTGTGTTTATGCTTAAGTTTGATAGAAGAGGCTTTTTAGATGCCTAGGTACTAGGGTGAAGTCAATGCTGGATAGAAGAGGTATTGTGTAAGGTAAACTATGAGATTCCTATGAAGCCCTAGTGTTGTGTTATTATTATTAATCTATCATTTCTCCTATGTAACTTCATTCAATGTTTTATGTCTACCTCCACTCCTGCAGCTGCTTCATCATTGGCCTTTTTGCATAAATTGATTCTCTATCTAAAATTATTTGTGATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688877" ref_strand="+" ref_description="SGN-E688877 [t3_tus_55_C21]">
      <seq>ctccaccgcagtaagtggcatatttagtgatgttttgctattgtcatagaagtttaataacattgagaggtagaaatcaggaaagtgaagcatttgtataatgttctcctacagtggaaaactaatctttctgccctgttatagtataggagttcaaacgggcctcctaagttgatatattgttgatttgtcattttcttgtataattgcttaccttggtgttcggtgtaaaaacagaacaggcttgcgtctatgcatttctgggcaggtcacgtaatggttaccccgtttctagtttgaggaaggcttattagtcagttaaaagtgatttgaactatagtaattacaattgtgtttatgcttaagtttgatagaagaggctttttagatgcctaggtactagggtgaagtcaatgctggatagaagaggtattgtgtaaggtaaactatgagattcctatgaagccttagtgttgtgttattattattaatctatcatttctcctatgtaacttcattcaatgttttatgtctacctccactcctgcagctgcttcatcattggcctttttgcataaattgattctctatctaaaattatttgtgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="17501" stop="16290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17201" g_stop="16590" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E688877" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17201" e_stop="16590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGACAGCAGTAAGTGGCATATTTAGTGATGTTTTGCTATTGTCATAGAAGTTTAATAACATTGAGAGGTAGAAATCAGGAAAGTGAAGCATTTGTATAATGTTCTCCTACAGTGGAAAACTAATCTTTCTGCCCTGTTATAGTATAGGAGTTCAAACGGGCCTCCTAAGTTGATATATTGTTGATTTGTCATTTTCTTGTATAATTGCTTACCTTGGTGTTCGGTGTAAAAACAGAACAGGCTTGCGTCTATGCATTTCTGGGCAGGTCACGTAATGGTTACCCCGTTTCTAGTTTGAGGAAGGCTTATTAGTCAGTTAAAAGTGATTTGAACTATAGTAATTACAATTGTGTTTATGCTTAAGTTTGATAGAAGAGGCTTTTTAGATGCCTAGGTACTAGGGTGAAGTCAATGCTGGATAGAAGAGGTATTGTGTAAGGTAAACTATGAGATTCCTATGAAGCCTTAGTGTTGTGTTATTATTATTAATCTATCATTTCTCCTATGTAACTTCATTCAATGTTTTATGTCTACCTCAACTCCTGCAGCTGCTTCATCATTGGCCTTTTTGCATAAATTGATTCTCTATCTAAAATTATTTGTGATTTTG</genome_strand>
        <mrna_strand>CTCCACCGCAGTAAGTGGCATATTTAGTGATGTTTTGCTATTGTCATAGAAGTTTAATAACATTGAGAGGTAGAAATCAGGAAAGTGAAGCATTTGTATAATGTTCTCCTACAGTGGAAAACTAATCTTTCTGCCCTGTTATAGTATAGGAGTTCAAACGGGCCTCCTAAGTTGATATATTGTTGATTTGTCATTTTCTTGTATAATTGCTTACCTTGGTGTTCGGTGTAAAAACAGAACAGGCTTGCGTCTATGCATTTCTGGGCAGGTCACGTAATGGTTACCCCGTTTCTAGTTTGAGGAAGGCTTATTAGTCAGTTAAAAGTGATTTGAACTATAGTAATTACAATTGTGTTTATGCTTAAGTTTGATAGAAGAGGCTTTTTAGATGCCTAGGTACTAGGGTGAAGTCAATGCTGGATAGAAGAGGTATTGTGTAAGGTAAACTATGAGATTCCTATGAAGCCTTAGTGTTGTGTTATTATTATTAATCTATCATTTCTCCTATGTAACTTCATTCAATGTTTTATGTCTACCTCCACTCCTGCAGCTGCTTCATCATTGGCCTTTTTGCATAAATTGATTCTCTATCTAAAATTATTTGTGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258610" ref_strand="+" ref_description="SGN-E258610 [cLEG-47-P4]">
      <seq>tcgacagcagtaagtggcatatttagtgatgttttgctattgtcatagaagtttaataacattgagaggtagaaatcaggaaagtgaagcatttgtataatgttctcctacagtggaaaactaatctttctgccctgttatagtataggagttcaaacgggcctcctaagttgatatattgttgatttgtcattttcttgtataattgcttaccttggtgttcggtgtaaaaacagaacaggcttgcgtctatgcatttctgggcaggtcacgtaatggttaccccgtttctagtttgaggaaggcttattagtcagttaaaagtgatttgaactatagtaattacaattgtggttatgcttaagtttgatagaagaagcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="17500" stop="16516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17200" g_stop="16816" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E258610" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17200" e_stop="16816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACAGCAGTAAGTGGCATATTTAGTGATGTTTTGCTATTGTCATAGAAGTTTAATAACATTGAGAGGTAGAAATCAGGAAAGTGAAGCATTTGTATAATGTTCTCCTACAGTGGAAAACTAATCTTTCTGCCCTGTTATAGTATAGGAGTTCAAACGGGCCTCCTAAGTTGATATATTGTTGATTTGTCATTTTCTTGTATAATTGCTTACCTTGGTGTTCGGTGTAAAAACAGAACAGGCTTGCGTCTATGCATTTCTGGGCAGGTCACGTAATGGTTACCCCGTTTCTAGTTTGAGGAAGGCTTATTAGTCAGTTAAAAGTGATTTGAACTATAGTAATTACAATTGTGTTTATGCTTAAGTTTGATAGAAGAGGCTTTTT</genome_strand>
        <mrna_strand>TCGACAGCAGTAAGTGGCATATTTAGTGATGTTTTGCTATTGTCATAGAAGTTTAATAACATTGAGAGGTAGAAATCAGGAAAGTGAAGCATTTGTATAATGTTCTCCTACAGTGGAAAACTAATCTTTCTGCCCTGTTATAGTATAGGAGTTCAAACGGGCCTCCTAAGTTGATATATTGTTGATTTGTCATTTTCTTGTATAATTGCTTACCTTGGTGTTCGGTGTAAAAACAGAACAGGCTTGCGTCTATGCATTTCTGGGCAGGTCACGTAATGGTTACCCCGTTTCTAGTTTGAGGAAGGCTTATTAGTCAGTTAAAAGTGATTTGAACTATAGTAATTACAATTGTGGTTATGCTTAAGTTTGATAGAAGAAGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260306" ref_strand="+" ref_description="SGN-E260306 [cLEG-53-M15]">
      <seq>tcgacagcagtaagtggcatatttagtgatgttttgctattgtcatagaagtttaataacattgagaggtagaaatcaggaaagtgaagcatttgtataatgttctcctacagtggaaaactaatctttctgccctgttatagtataggagttcaaacgggcctcctaagttgatatattgttgatttgtcattttcttgtataattgcttaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="17500" stop="16684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17200" g_stop="16984" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E260306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17200" e_stop="16984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACAGCAGTAAGTGGCATATTTAGTGATGTTTTGCTATTGTCATAGAAGTTTAATAACATTGAGAGGTAGAAATCAGGAAAGTGAAGCATTTGTATAATGTTCTCCTACAGTGGAAAACTAATCTTTCTGCCCTGTTATAGTATAGGAGTTCAAACGGGCCTCCTAAGTTGATATATTGTTGATTTGTCATTTTCTTGTATAATTGCTTACCTTG</genome_strand>
        <mrna_strand>TCGACAGCAGTAAGTGGCATATTTAGTGATGTTTTGCTATTGTCATAGAAGTTTAATAACATTGAGAGGTAGAAATCAGGAAAGTGAAGCATTTGTATAATGTTCTCCTACAGTGGAAAACTAATCTTTCTGCCCTGTTATAGTATAGGAGTTCAAACGGGCCTCCTAAGTTGATATATTGTTGATTTGTCATTTTCTTGTATAATTGCTTACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724378" ref_strand="+" ref_description="SGN-E724378 [FC23DG07]">
      <seq>gattttagagttgtttaatggggtgttggttttctgcttgcgtctagagctgttcataatgcttcaagaacactactctctctgttataaaaggaaaatctctgcctctatggatatccaagtgagcagtgggaagtcaatttgccagctgaggaggtgcctccagagcttccagagccagcactaggtataaacttcgctagagatgggatgcaagaaaaggaatggttagctctagttgctgtacatagtgatgcatggctactctctgtttccttctattttggtgccagattcggctttgatagagctgacaggaaacgtcttttcaacatgatgaatgatctgccaacaatatatgaagttgttactggagtggccaagaagagagtaaaggataaatcaacagtttcaaatcacagcagcaacaagtcaaaatcaaattctaaagcggtactgttgaaaacctctccagtccccaatccttctctcttctctcaaatagatgtttttcttggataacagtagctgtgcagtagtgttcaaaggattccctttggacagtatttagctgaaaaccttcagctttaggacattgccactgaattctttcctaaatttatgtttgtcaatctaagatatggtcaatgaatcactagatggatcctctctgattttgagccatggttcaaatttcaatcatccacacccatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="19250" stop="16926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18950" g_stop="18863" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18862" i_stop="18235" i_length="628">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18234" g_stop="18006" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="317" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18005" i_stop="17625" i_length="381">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17624" g_stop="17226" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="716" r_length="399" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E724378" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18950" e_stop="18863"/>
          <exon e_start="18234" e_stop="18006"/>
          <exon e_start="17624" e_stop="17226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTAGAGTTGTTTAATGGGGTGTTGGTTTTCTGCTTGCGTCTAGAGCTGTTCATAATGCTTCAAGAACACTACTCTCTCTGTTATGTACTGTACCGTGTGCTTAATGTGAATTCATTCTACTTTAAATGGAGATGTTTCAGACATATGAGTTGTGGGAGAAATATCTTATTTAGATTGTTGGTTAAGCTTTCTGCCCAAACTGAAATTGCCATGTTTACCGGTTGGGTGGACTTGACCTGGAGATGAGTGAATAGTAACTGTGGTCTTATGCTCTTACTGTATGTTGTCCCTCACAATATGATTCTAGCAATCAATCCCCAGATGTTTTAAGTTTTCATAGCTTGGAGGATATTGGTCTAACTTCATATACAGGCTTCATTTTTTCGCTTTGATTGAGTTGCTATTGCAGATGTAGGATCATTTTCTGTCTGCTCCTTTTTTGCTTACTGACCAGCTTTGTTATTGATTTAAGTCTCAAATTACTAATTATCATTTCGTGAATTCTCATCCAACTTAATAAATTCTGTGACAAAAGATTGAAGCTTGTGCCTGATTTTGTCCTTAGAATACTTTTTGCATGATAAAGATATTGGTGGCGCCAATGTTGTATTCTGACTTCGCTGTGCTTAGATGCTGTTTCTTATTGAACAAGTGTTTTTCTGATTGTGATTAGTCTTTGTTTACTGTCTCTTTATATTTGGATACCTTGCAGAAAAGGAAAATCTCTGCCTCTATGGATATCCAAGTGAGCAGTGGGAAGTCAATTTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCACTAGGTATAAACTTCGCTAGAGATGGGATGCAAGAAAAGGAATGGTTAGCTCTAGTTGCTGTACATAGTGATGCATGGCTACTCTCTGTTTCCTTCTATTTTGGTGCCAGATTCGGCTTTGATAGAGCTGACAGGTAAACTTGATTCTACAGCAATATAAGAAAATTGTTTCTTGGTTATTTGTAATTTTAATAGGTCACCTTTCAAGTGATTTATTTGTTTATATTTTTTTTTCCTTTTTAATCATATCAGAATTGTGTCTTTTCTTCAAATATCTTGCTTTGAATCATAAATAGTTGCGAACAGCATACAAGTCTTTGCTGTGTCATTTTGTAAAGCATTCTGGAAGTATGCTTATAATTACACCTTGTCAGATGTCAAAGCTTGGAGGAATTGTCCCAACAGGCATATGTGTGATTTCTTTGATGGAGAAAAACAATTATTTCCTTCATTTAGAGTCCTTAGTATGGGATATTTTTTCACTTCACTGAATTCTTTTGATCTCTTTCATCTAGGAAACGTCTTTTCAACATGATGAATGATCTGCCAACAATATATGAAGTTGTTACTGGAGTGGCCAAGAAGAGAGTAAAGGATAAATCAACAGTTTCAAATCACAGCAGCAACAAGTCAAAATCAAATTCTAAAGCGGTACTGTTGAAAACCTCTCCAGTCCCCAATCCTTCTCTCTTCTCTCAAATAGATGTTTTTCTTGGATAACAGTAGCTGTGCAGTAGTGTTCAAAGGATTCCCTTTGGACAGTATTTAGCTGAAAACCTTCAGCTTTAGGACATTGCCACTGAATTCTTTCCTAAATTTATGTTTGTCAATCTAAGATATGGTCAATGAATCACTAGATGGATCCTCTCTGATTTTGAGCCATGGTTCAGATTTCAATCATCCACACCCATTTT</genome_strand>
        <mrna_strand>GATTTTAGAGTTGTTTAATGGGGTGTTGGTTTTCTGCTTGCGTCTAGAGCTGTTCATAATGCTTCAAGAACACTACTCTCTCTGTTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAAAATCTCTGCCTCTATGGATATCCAAGTGAGCAGTGGGAAGTCAATTTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCACTAGGTATAAACTTCGCTAGAGATGGGATGCAAGAAAAGGAATGGTTAGCTCTAGTTGCTGTACATAGTGATGCATGGCTACTCTCTGTTTCCTTCTATTTTGGTGCCAGATTCGGCTTTGATAGAGCTGACAG.............................................................................................................................................................................................................................................................................................................................................................................................GAAACGTCTTTTCAACATGATGAATGATCTGCCAACAATATATGAAGTTGTTACTGGAGTGGCCAAGAAGAGAGTAAAGGATAAATCAACAGTTTCAAATCACAGCAGCAACAAGTCAAAATCAAATTCTAAAGCGGTACTGTTGAAAACCTCTCCAGTCCCCAATCCTTCTCTCTTCTCTCAAATAGATGTTTTTCTTGGATAACAGTAGCTGTGCAGTAGTGTTCAAAGGATTCCCTTTGGACAGTATTTAGCTGAAAACCTTCAGCTTTAGGACATTGCCACTGAATTCTTTCCTAAATTTATGTTTGTCAATCTAAGATATGGTCAATGAATCACTAGATGGATCCTCTCTGATTTTGAGCCATGGTTCAAATTTCAATCATCCACACCCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378277" ref_strand="+" ref_description="SGN-E378277 [TUS-27-J17]">
      <seq>tggatcatttagttcagaggaccgatattgacacatcaagaatagtagtctttggaaggtcacttggaggagctgttggcactgttcttaccaaaaacaatcctgacaaggtagctgggctcattttggagaatactttcacctctatcctggatatggcaggagttctcttgccattcttgaagtgggtcattggtggcagtggctcaaagggtttcaagcttcttaactttgttgttcgatctccatggaataccattgatgtcattggtgagatcaggcaaccaatcctcttcctatctggattacaagatgagatggttccaccattccacatgcagatgctgtatgcaaaggcagcggcacgtaacaggcaatgcttatttgtggaatttcctagtgggatgcacatggatacctggttggcaggtggtgatcattattggaggacaattcagaaatatttggaagaaactgtcccagagaagaaggatgatgaatcaaagaaggattccgaactgtcctctaagcaaaatgtatcttcagatttcgctgcaagctgaaatgttgagtttcaggcagttcaaatgtaactttggattcgaggattcaaatacatttcttttgatgttgcagtgatgaagagcagtttgtgatatcaagggaatggaagtgcatcctttcaaatatttattcttctgatgatattttttggtgtcctattttcagaaggtaaaaagatgtgaagggtcttgatttatactgcatctcactaacaatactagggtgtcgaaatataggtccagctgagttgttttgtatgaataaggatccaaacgtaaaatggcaactctctactagagagtgataacaggcggaagacattctttcgtgtgaatggcttactctttatttggtgtgatgctttttctccnaaggnagtataatttgtgaacttccatctatgtattcaaaactttccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="26422" stop="21017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26122" g_stop="26013" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26012" i_stop="24565" i_length="1448">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24564" g_stop="24400" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="275" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24399" i_stop="22660" i_length="1740">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22659" g_stop="22398" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="537" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22397" i_stop="21769" i_length="629">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21768" g_stop="21317" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="984" r_length="447" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E378277" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>989</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26122" e_stop="26013"/>
          <exon e_start="24564" e_stop="24400"/>
          <exon e_start="22659" e_stop="22398"/>
          <exon e_start="21768" e_stop="21317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAGGTAATGTAGCAATTTATTTTTCTTTTTGTCATGCTGTTACGTCTAATAATGTTATAAAGCCTGATTATCTCTAATTTGTTTAGTTTCCTTTTTACTCCTTAAATTTGAGTTCAACATAGGTTCCATCACGGAAAGAGAATTTATAGTACTTTGTCAAGTTTCTTTCAAACTTATATGCTCTATGGGTGCTCTTGGCTCCACCTGGTTGAAGTAAATAACTTTAGAGGCACTCTTTCGAGCTTGATAGGAATACAAGCTTTCAAGCGAAAACTAAACTAATCTGAGTTCATCACCAGCATGAGAGGGGCAACTTATAAATATGACGAAGAAAAAAAGAACTATTTCTTTTCTAGAATAAAAACAAAGCTGCGTTTCTTTCCCTTTAGAGTAAAGAGAAATCTCTTCTGCACCTAAACTATTGACCGTAAGATAAGTTACTAGCTTGTAATATTGTAGATGTCTGATTTAATTCCTTTTTTTTTTCACTTCTTCAATGGATGAGTTTAGGAGAATGTTTGCTCCCATTTTTCTCAAATAAAATAGAAGTCCATATAATCTTATGATGTTAGTCTCTTGGGTGTATAACCTCTACGATTTATCTCATGACGGTGATGTTCTTTAAGTACATTATCCTCTTTTGCGCTATTTGTTCATTATGTAACTAGAAACTTTTGATGTGCTTCTAGTATTGAGACCCCATCAGAACCCGAGTTTGTTTATCTTACTCCATTTCCACATACTTTAATCTTCATCCAATATTACATCCAGTTCATGCATACAAGAAGAGTTTGGTATCTGAAAGAATGTAATAGTAGTCGAATGTTCAACAGAATCTTTATTTGTATTACAGAAATCATTAATTCCACATGCCAAGTGAAAAAATCTCCCTTAATGCAGTTCCATGGTTTGATGTGAGTGACCCAACGATCTAGATTTGGTAATTATATTAGTATTCATCAGTTGATCCCGCGTTTCTTAGATGATCCACAAATTGATATGCCTTGATTCCCGCGTTTCTTAGATGATCTACAAATTGATATTCCTTGATTATGGTTTTCTTGTTTGATATTCAAGTTCCTTGTTTATGATTTTCCTGTTTGATGTGTGAGGTGATCAGTTTATTTTTGAGGTTTTCCCACTGCCAATTACGTATAGTTGATTAAGCATGTTCTGGGTCAAGCTGCATAGAATAGAGTCTGTCTATTTTGTTTAGGGGAATCTATATGAACCTCTTTTTTGTTTCTTTCTGTTCTGTGTCTTTATCTTTCCGGGTTTTATTCCAAACTTTTCTGTTCCAAGGTGTGTAACTTGTACATGTGTTTTGACATTCAAATCCTAGTTTTCTTTCACTATCGTAGGTTGCGGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGTTTTTTGACATTCAAATCCTAGTTTTCTTTCACTAATGTAGGTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAGGTGAGGATGCATCTTTATAACTCTCTCTGTCCCATTTGAATTGACTTGAGTTTACTTTTTCTTCAGAGTAAACTTCATTTTTTTTGTTTTATTGAGTATACTAAAGGTAGAGAAAGTTGTGAAGATGTCACTCAAGTTTGTAAAGTTTAAGTTAAGTTCTTGGAGGGATAAAAATTATGTTTCTAGCAAATAGTTCATAATTTTTAGGATGGACTAAATAGAACTGGGTAATTAAGTTGGATTGAGGTAATATATTTCATGGTTTGACTAATAGCGAAGTGTTTTAAAGTAGTAACGTGGATAAGTCATTTCTGATCCTTTTTTCTGAGTAGGCATTTGGCCATGGAAACTAAATATTTTTCACTTTATTTGGGATTTCTGAAGTTGAAGTTGAAGATGGATTTGTGTATGGTTATAGCTTTTGCAAAGAATATTTGGTTGCTAATTTTCAAAAAAAGAATATTTGGCTTCTTGAATGTTTCTTTTCCATAGAACATGAAAATAATGAAATATGATTTGTACCCCTCAATTTTTAAAAAATAGCATAACCATCAAACGTAATGAATTTACATGAAACATACAATCTGATTTCTCTATAAGAGTAATATCTCGTAATGGATAGTCATATAATATCATAAATAGGATACCACGTTTTTAAAAAGTGAATCTTTGTAGAAAAAAAGAAATACAGAAATAGTCAGCTGGCTCCATTGATTTTGTTATCTACATTAACATTGGACCAAACAGACATAAAAGCACCAACAAAGTAATGGAACAGAAACTCTCCAAGAAATGAAAACCAGATCATACACAAAGCAGCCTAATTATCTACATACCTGTTTTACCATTTCAAAGGAACACAAAGAAAAATCAAAATCCAAGAGAAGTAAAAACAAGATTTCATAAGTAAAAGCACATACATATAATCAATGTTTTAACCTCCTATGTAAGCACTCATTTCAAAAAAATGCATAAAAGAGTGATACTTAATTTAGGCATGTTGCCAAGCAATTTCTTAAGTTCTGTTCTTCTTATAATTTCTTGGAAAGTGATCACTTGGATGGCTTAATAAAAACAAACTTTTTATAAAGTTCTGCACTTGTTAAAATTCCCTGGCTAGTGGCTGATTTAAACGGTCATTTTTTATAAAAACAAAACATTTAGGGCATTTTTTTTTTTAAAAAAGAGAAATAAATGCAATGGTCAAAAGTGAGATGGAAATAAGTGAAAACAAGTTTTGAGGTGTTTTCCGAATTTCAAATATAGCTTCAAGTTGTATTTGGAATTTTCATGGTTAATTGATGATTTTCAGATGAAATTTAGAAAAGAAAAAAGTGAATAATTCTGACGTATTCATTTACTATGAAATGCACTTGAATTGCATCTCAGTTGTATATTTGTAATTTCATAGATAAGATGCGATTGATGTGATATTGAGAGATCTAGTCACTGTTCTTGCACGTTTTGATAACAGCAGGGTTTCTTATCGACCATGAATCTGTATTTTATTATAGTTGCCTGAACCATCTTAGATTTTATTTTAACTTTGTGAAATAACTGTGTCTGCTAGCCTTTTATCTATTTATTGTTAAGTTGCTAGAAGCTGGTCGAAATTATGTTCTCTTCCCCCCTTTTTCAGAAGGAAGCTGGTTGTAATTATATTTCTGGCTTTTGTTGTCCTTGTTATGTTCAAGTTAGCTCAGACGTCTGGCTTATGTTATCTGATTGTTTTGAGTGCAGATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAATGCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAAACTGTCCCAGAGAAGAAGGATGATGAATCAAAGAAGGATTCCGAACTGTCCTCTAAGCAAAATGGTTAGTTGCAGATATCAACTTCATCTGCTATTGTTCTGCTATCTTTTCTTTGTTATATGGTTTTGGGCATCTTAATTATCGTCTAAGAAAATATTTGTGAAAACACAGATGATAAATCTTCTTTGAAGGATATTGTTAGTTAGGGTTCTAGAGGCTGCAATCCTTCTATATACCTGGACAGTCGGCCCCTTTTAAACTGTCTCGAAAAAAAAATTGCTCTGTCGAAGACTGGGTCAAGTATGACTGATCCCTCTAGAAATCTGAAAGGAAGTCATGTCCTATTTTATCAGCCTAAGGAATAGTCCATTTTGTTATGTCTAAAATCTATTTTCAAAATTAACTCATAAAATAGTATTTGGAAAAGACATTTGAGAGTATGATATCCAACAGGTATCTAATAATTCATAGAACAGTAAATGCTATAAATTCTTTTGATTTAGCTCCTGTTATAGCTCCTTTCTGAGACTACAAGATTGTTAAAGTATTACCTTATCCTGCTACCTCATATATCCATTTATCTTCACTTTGTGGATCATTGTTTCTCACTGTGTTGAATTTGAAAGCTGATGAACTTCAATTCTTGTCTAGGCTAATCGTGGCTGTTTGGTTTGTGATAATATCATTTGCAGTATCTTCAGATTTCGCTGCAAGCTGAAATGTTGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGATATCAAGGGAATGGAAGTGCATCCTTTCAAATATTTATTCTTCTGATGATATTTTTTGGTGTCCTATTTTCAGAAGGTAAAAAGATGTGAAGGGTCTTGATTTATACTGCATCTCACTAACAATACTAGGGTGTCGAAATATAGGTCCAGCTGAGTTGTTTTGTATGAATAAGGATCCAAACGTAAAATGGCAACTCTCTACTAGAGAGTGATAACAGGCGGAAGACATTCTTTCGTGTGAATGGCTTACTCTTTATTTTGGTGTGATGCTTTTTCTTCCAAAGGGAGTTATAATTTGTGAACTTCCAATCTATGTATTCAAAAACTTTCCTA</genome_strand>
        <mrna_strand>TGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAATGCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAAACTGTCCCAGAGAAGAAGGATGATGAATCAAAGAAGGATTCCGAACTGTCCTCTAAGCAAAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTTCAGATTTCGCTGCAAGCTGAAATGTTGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGATATCAAGGGAATGGAAGTGCATCCTTTCAAATATTTATTCTTCTGATGATATTTTTTGGTGTCCTATTTTCAGAAGGTAAAAAGATGTGAAGGGTCTTGATTTATACTGCATCTCACTAACAATACTAGGGTGTCGAAATATAGGTCCAGCTGAGTTGTTTTGTATGAATAAGGATCCAAACGTAAAATGGCAACTCTCTACTAGAGAGTGATAACAGGCGGAAGACATTCTTTCGTGTGAATGGCTTACTCTTTA-TTTGGTGTGATGCTTTTTC-TCCNAAGGNAG-TATAATTTGTGAACTTCC-ATCTATGTATTC-AAAACTTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552070" ref_strand="+" ref_description="SGN-E552070 [cTSB-2-L6]">
      <seq>aatcacaaaggatgctcaggctgcactggatcatttagttcagaggaccgatattgacacatcaagaatagtagtctttggaaggtcacttggaggagctgttggcactgttcttaccaaaaacaatcctgacaaggtagctgggctcattttggagaatactttcacctctatcctggatatggcaggagttctcttgccattcttgaagtgggtcattggtggcagtggctcaaagggtttcaagcttcttaactttgttgttcgatctccatggaataccattgatgtcattggtgagatcaggcaaccaatcctcttcctatctggattacaagatgagatggttccaccattccacatgcagatgctgtatgcaaaggcagcggcacgtaacaggcaatgcttatttgtggaatttcctagtgggatgcacatggatacctggttggcaggtggtgatcattattggaggacaattcagaaatatttggaagaaactgtcccagagaagaaggatgatgaatcaaagaaggattccgaactgtcctctaagcaaaatgtatcttcagatttcgctgcaagctgaaatgttgagtttcaggcagttcaaatgtaactttggattcgaggattcaaatacatttcttttgatgttgcagtgatgaagagcagtttgtgatatcaagggaatggaagtgcatcctttcaaatatttattcttctgatgatattttttggtgtcctattttcagaaggtaaaaagatgtgaagggtcttgatttatactgcatctcactaacaatactagggtgtcgaaatataggtccagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="26532" stop="21197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26232" g_stop="26214" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26213" i_stop="26130" i_length="84">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26129" g_stop="26013" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="136" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26012" i_stop="24565" i_length="1448">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24564" g_stop="24400" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="301" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24399" i_stop="22660" i_length="1740">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22659" g_stop="22398" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="563" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22397" i_stop="21769" i_length="629">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21768" g_stop="21497" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="835" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E552070" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26232" e_stop="26214"/>
          <exon e_start="26129" e_stop="26013"/>
          <exon e_start="24564" e_stop="24400"/>
          <exon e_start="22659" e_stop="22398"/>
          <exon e_start="21768" e_stop="21497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACAAAGGATGCTCAGGTTTTGTTAGCTTTCTCAATTTCATAGATTTTGACCCAAACCTTATTTTTGAAATTACATAATTGTGCTTGTCTTGTTCAATAGGCTGCACTGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAGGTAATGTAGCAATTTATTTTTCTTTTTGTCATGCTGTTACGTCTAATAATGTTATAAAGCCTGATTATCTCTAATTTGTTTAGTTTCCTTTTTACTCCTTAAATTTGAGTTCAACATAGGTTCCATCACGGAAAGAGAATTTATAGTACTTTGTCAAGTTTCTTTCAAACTTATATGCTCTATGGGTGCTCTTGGCTCCACCTGGTTGAAGTAAATAACTTTAGAGGCACTCTTTCGAGCTTGATAGGAATACAAGCTTTCAAGCGAAAACTAAACTAATCTGAGTTCATCACCAGCATGAGAGGGGCAACTTATAAATATGACGAAGAAAAAAAGAACTATTTCTTTTCTAGAATAAAAACAAAGCTGCGTTTCTTTCCCTTTAGAGTAAAGAGAAATCTCTTCTGCACCTAAACTATTGACCGTAAGATAAGTTACTAGCTTGTAATATTGTAGATGTCTGATTTAATTCCTTTTTTTTTTCACTTCTTCAATGGATGAGTTTAGGAGAATGTTTGCTCCCATTTTTCTCAAATAAAATAGAAGTCCATATAATCTTATGATGTTAGTCTCTTGGGTGTATAACCTCTACGATTTATCTCATGACGGTGATGTTCTTTAAGTACATTATCCTCTTTTGCGCTATTTGTTCATTATGTAACTAGAAACTTTTGATGTGCTTCTAGTATTGAGACCCCATCAGAACCCGAGTTTGTTTATCTTACTCCATTTCCACATACTTTAATCTTCATCCAATATTACATCCAGTTCATGCATACAAGAAGAGTTTGGTATCTGAAAGAATGTAATAGTAGTCGAATGTTCAACAGAATCTTTATTTGTATTACAGAAATCATTAATTCCACATGCCAAGTGAAAAAATCTCCCTTAATGCAGTTCCATGGTTTGATGTGAGTGACCCAACGATCTAGATTTGGTAATTATATTAGTATTCATCAGTTGATCCCGCGTTTCTTAGATGATCCACAAATTGATATGCCTTGATTCCCGCGTTTCTTAGATGATCTACAAATTGATATTCCTTGATTATGGTTTTCTTGTTTGATATTCAAGTTCCTTGTTTATGATTTTCCTGTTTGATGTGTGAGGTGATCAGTTTATTTTTGAGGTTTTCCCACTGCCAATTACGTATAGTTGATTAAGCATGTTCTGGGTCAAGCTGCATAGAATAGAGTCTGTCTATTTTGTTTAGGGGAATCTATATGAACCTCTTTTTTGTTTCTTTCTGTTCTGTGTCTTTATCTTTCCGGGTTTTATTCCAAACTTTTCTGTTCCAAGGTGTGTAACTTGTACATGTGTTTTGACATTCAAATCCTAGTTTTCTTTCACTATCGTAGGTTGCGGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGTTTTTTGACATTCAAATCCTAGTTTTCTTTCACTAATGTAGGTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAGGTGAGGATGCATCTTTATAACTCTCTCTGTCCCATTTGAATTGACTTGAGTTTACTTTTTCTTCAGAGTAAACTTCATTTTTTTTGTTTTATTGAGTATACTAAAGGTAGAGAAAGTTGTGAAGATGTCACTCAAGTTTGTAAAGTTTAAGTTAAGTTCTTGGAGGGATAAAAATTATGTTTCTAGCAAATAGTTCATAATTTTTAGGATGGACTAAATAGAACTGGGTAATTAAGTTGGATTGAGGTAATATATTTCATGGTTTGACTAATAGCGAAGTGTTTTAAAGTAGTAACGTGGATAAGTCATTTCTGATCCTTTTTTCTGAGTAGGCATTTGGCCATGGAAACTAAATATTTTTCACTTTATTTGGGATTTCTGAAGTTGAAGTTGAAGATGGATTTGTGTATGGTTATAGCTTTTGCAAAGAATATTTGGTTGCTAATTTTCAAAAAAAGAATATTTGGCTTCTTGAATGTTTCTTTTCCATAGAACATGAAAATAATGAAATATGATTTGTACCCCTCAATTTTTAAAAAATAGCATAACCATCAAACGTAATGAATTTACATGAAACATACAATCTGATTTCTCTATAAGAGTAATATCTCGTAATGGATAGTCATATAATATCATAAATAGGATACCACGTTTTTAAAAAGTGAATCTTTGTAGAAAAAAAGAAATACAGAAATAGTCAGCTGGCTCCATTGATTTTGTTATCTACATTAACATTGGACCAAACAGACATAAAAGCACCAACAAAGTAATGGAACAGAAACTCTCCAAGAAATGAAAACCAGATCATACACAAAGCAGCCTAATTATCTACATACCTGTTTTACCATTTCAAAGGAACACAAAGAAAAATCAAAATCCAAGAGAAGTAAAAACAAGATTTCATAAGTAAAAGCACATACATATAATCAATGTTTTAACCTCCTATGTAAGCACTCATTTCAAAAAAATGCATAAAAGAGTGATACTTAATTTAGGCATGTTGCCAAGCAATTTCTTAAGTTCTGTTCTTCTTATAATTTCTTGGAAAGTGATCACTTGGATGGCTTAATAAAAACAAACTTTTTATAAAGTTCTGCACTTGTTAAAATTCCCTGGCTAGTGGCTGATTTAAACGGTCATTTTTTATAAAAACAAAACATTTAGGGCATTTTTTTTTTTAAAAAAGAGAAATAAATGCAATGGTCAAAAGTGAGATGGAAATAAGTGAAAACAAGTTTTGAGGTGTTTTCCGAATTTCAAATATAGCTTCAAGTTGTATTTGGAATTTTCATGGTTAATTGATGATTTTCAGATGAAATTTAGAAAAGAAAAAAGTGAATAATTCTGACGTATTCATTTACTATGAAATGCACTTGAATTGCATCTCAGTTGTATATTTGTAATTTCATAGATAAGATGCGATTGATGTGATATTGAGAGATCTAGTCACTGTTCTTGCACGTTTTGATAACAGCAGGGTTTCTTATCGACCATGAATCTGTATTTTATTATAGTTGCCTGAACCATCTTAGATTTTATTTTAACTTTGTGAAATAACTGTGTCTGCTAGCCTTTTATCTATTTATTGTTAAGTTGCTAGAAGCTGGTCGAAATTATGTTCTCTTCCCCCCTTTTTCAGAAGGAAGCTGGTTGTAATTATATTTCTGGCTTTTGTTGTCCTTGTTATGTTCAAGTTAGCTCAGACGTCTGGCTTATGTTATCTGATTGTTTTGAGTGCAGATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAATGCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAAACTGTCCCAGAGAAGAAGGATGATGAATCAAAGAAGGATTCCGAACTGTCCTCTAAGCAAAATGGTTAGTTGCAGATATCAACTTCATCTGCTATTGTTCTGCTATCTTTTCTTTGTTATATGGTTTTGGGCATCTTAATTATCGTCTAAGAAAATATTTGTGAAAACACAGATGATAAATCTTCTTTGAAGGATATTGTTAGTTAGGGTTCTAGAGGCTGCAATCCTTCTATATACCTGGACAGTCGGCCCCTTTTAAACTGTCTCGAAAAAAAAATTGCTCTGTCGAAGACTGGGTCAAGTATGACTGATCCCTCTAGAAATCTGAAAGGAAGTCATGTCCTATTTTATCAGCCTAAGGAATAGTCCATTTTGTTATGTCTAAAATCTATTTTCAAAATTAACTCATAAAATAGTATTTGGAAAAGACATTTGAGAGTATGATATCCAACAGGTATCTAATAATTCATAGAACAGTAAATGCTATAAATTCTTTTGATTTAGCTCCTGTTATAGCTCCTTTCTGAGACTACAAGATTGTTAAAGTATTACCTTATCCTGCTACCTCATATATCCATTTATCTTCACTTTGTGGATCATTGTTTCTCACTGTGTTGAATTTGAAAGCTGATGAACTTCAATTCTTGTCTAGGCTAATCGTGGCTGTTTGGTTTGTGATAATATCATTTGCAGTATCTTCAGATTTCGCTGCAAGCTGAAATGTTGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGATATCAAGGGAATGGAAGTGCATCCTTTCAAATATTTATTCTTCTGATGATATTTTTTGGTGTCCTATTTTCAGAAGGTAAAAAGATGTGAAGGGTCTTGATTTATACTGCATCTCACTAACAATACTAGGGTGTCGAAATATAGGTCCAGCTG</genome_strand>
        <mrna_strand>AATCACAAAGGATGCTCAG....................................................................................GCTGCACTGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAATGCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAAACTGTCCCAGAGAAGAAGGATGATGAATCAAAGAAGGATTCCGAACTGTCCTCTAAGCAAAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTTCAGATTTCGCTGCAAGCTGAAATGTTGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGATATCAAGGGAATGGAAGTGCATCCTTTCAAATATTTATTCTTCTGATGATATTTTTTGGTGTCCTATTTTCAGAAGGTAAAAAGATGTGAAGGGTCTTGATTTATACTGCATCTCACTAACAATACTAGGGTGTCGAAATATAGGTCCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289224" ref_strand="+" ref_description="SGN-E289224 [cLES-18-G21]">
      <seq>tgagatcaggcaaccaatcctcttgctatctggattacaagatgagatggttgcaccattccacatgcagatgctgaatgcaaaggcagcggcacgtaacacgcaatgcttatttgtggaatttgctagtgggaagcacatggatacctggttggcaggtggcgatcattattggaggacaactcagaaatatttggaggaaactgtcccagagaagaacgatgatgaatcaaataaggattccgaactgtgctctaagcaaaatgtgatgaagagcagtttgagatatcaagggaatggaagtgcactcctttcaaatatttattcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="22964" stop="21306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22664" g_stop="22398" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22397" i_stop="21670" i_length="728">
            <donor d_prob="0.979" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21669" g_stop="21606" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="331" r_length="65" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E289224" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22664" e_stop="22398"/>
          <exon e_start="21669" e_stop="21606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAATGCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAAACTGTCCCAGAGAAGAAGGATGATGAATCAAAGAAGGATTCCGAACTGTCCTCTAAGCAAAATGGTTAGTTGCAGATATCAACTTCATCTGCTATTGTTCTGCTATCTTTTCTTTGTTATATGGTTTTGGGCATCTTAATTATCGTCTAAGAAAATATTTGTGAAAACACAGATGATAAATCTTCTTTGAAGGATATTGTTAGTTAGGGTTCTAGAGGCTGCAATCCTTCTATATACCTGGACAGTCGGCCCCTTTTAAACTGTCTCGAAAAAAAAATTGCTCTGTCGAAGACTGGGTCAAGTATGACTGATCCCTCTAGAAATCTGAAAGGAAGTCATGTCCTATTTTATCAGCCTAAGGAATAGTCCATTTTGTTATGTCTAAAATCTATTTTCAAAATTAACTCATAAAATAGTATTTGGAAAAGACATTTGAGAGTATGATATCCAACAGGTATCTAATAATTCATAGAACAGTAAATGCTATAAATTCTTTTGATTTAGCTCCTGTTATAGCTCCTTTCTGAGACTACAAGATTGTTAAAGTATTACCTTATCCTGCTACCTCATATATCCATTTATCTTCACTTTGTGGATCATTGTTTCTCACTGTGTTGAATTTGAAAGCTGATGAACTTCAATTCTTGTCTAGGCTAATCGTGGCTGTTTGGTTTGTGATAATATCATTTGCAGTATCTTCAGATTTCGCTGCAAGCTGAAATGTTGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGATATCAAGGGAATGGAAGTGCA-TCCTTTCAAATATTTATTCTTCT</genome_strand>
        <mrna_strand>TG-AGATCAGGCAACCAATCCTCTTGCTATCTGGATTACAAGATGAGATGGTTGCACCATTCCACATGCAGATGCTGAATGCAAAGGCAGCGGCACGTAACACGCAATGCTTATTTGTGGAATTTGCTAGTGGGAAGCACATGGATACCTGGTTGGCAGGTGGCGATCATTATTGGAGGACAACTCAGAAATATTTGGAGGAAACTGTCCCAGAGAAGAACGATGATGAATCAAATAAGGATTCCGAACTGTGCTCTAAGCAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGAAGAGCAGTTTGAGATATCAAGGGAATGGAAGTGCACTCCTTTCAAATATTTATTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369022" ref_strand="+" ref_description="SGN-E369022 [TUS-25-H5]">
      <seq>ctaagaaaatatttgtgaaaacacagatgataaatcttctttgaaggatattgttagttagggttctagaggctgcaatccttctatatacctggacagtcggccccttttaaactgtctcgaaaaaaaaattgctctgtcgaagactgggtcaagtatgactgatccctctagaaatctgaaaggaagtcatgtcctattttatcagcctaaggaatagtccattttgttatgtctaaaatctattttcaaaattaactcataaaatagtatttggaaaagacatttgagagtatgatatccaacaggtatctaataattcatagaacagtaaatgctataaattcttttgatttagctcctgttatagctcctttctgagactacaagattgttaaagtattaccttatcctgctacctcatatatccatttatcttcactttgtggatcattgtttctcactgtgttgaatttgaaagctgatgaacttcaattcttgtctaggctaatcgtggctgtttggtttgtgataatatcatttgcagtatcttcagatttcgctgcaagctgaaatgttgagtttcaggcagttcaaatgtaactttggattcgaggattcaaatacatttcttttgatgttgcagtgatgaagagcagtttgtgatatcaagggaatggaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="22615" stop="21331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22315" g_stop="21631" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E369022" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22315" e_stop="21631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGAAAATATTTGTGAAAACACAGATGATAAATCTTCTTTGAAGGATATTGTTAGTTAGGGTTCTAGAGGCTGCAATCCTTCTATATACCTGGACAGTCGGCCCCTTTTAAACTGTCTCGAAAAAAAAATTGCTCTGTCGAAGACTGGGTCAAGTATGACTGATCCCTCTAGAAATCTGAAAGGAAGTCATGTCCTATTTTATCAGCCTAAGGAATAGTCCATTTTGTTATGTCTAAAATCTATTTTCAAAATTAACTCATAAAATAGTATTTGGAAAAGACATTTGAGAGTATGATATCCAACAGGTATCTAATAATTCATAGAACAGTAAATGCTATAAATTCTTTTGATTTAGCTCCTGTTATAGCTCCTTTCTGAGACTACAAGATTGTTAAAGTATTACCTTATCCTGCTACCTCATATATCCATTTATCTTCACTTTGTGGATCATTGTTTCTCACTGTGTTGAATTTGAAAGCTGATGAACTTCAATTCTTGTCTAGGCTAATCGTGGCTGTTTGGTTTGTGATAATATCATTTGCAGTATCTTCAGATTTCGCTGCAAGCTGAAATGTTGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGATATCAAGGGAATGGAAGTG</genome_strand>
        <mrna_strand>CTAAGAAAATATTTGTGAAAACACAGATGATAAATCTTCTTTGAAGGATATTGTTAGTTAGGGTTCTAGAGGCTGCAATCCTTCTATATACCTGGACAGTCGGCCCCTTTTAAACTGTCTCGAAAAAAAAATTGCTCTGTCGAAGACTGGGTCAAGTATGACTGATCCCTCTAGAAATCTGAAAGGAAGTCATGTCCTATTTTATCAGCCTAAGGAATAGTCCATTTTGTTATGTCTAAAATCTATTTTCAAAATTAACTCATAAAATAGTATTTGGAAAAGACATTTGAGAGTATGATATCCAACAGGTATCTAATAATTCATAGAACAGTAAATGCTATAAATTCTTTTGATTTAGCTCCTGTTATAGCTCCTTTCTGAGACTACAAGATTGTTAAAGTATTACCTTATCCTGCTACCTCATATATCCATTTATCTTCACTTTGTGGATCATTGTTTCTCACTGTGTTGAATTTGAAAGCTGATGAACTTCAATTCTTGTCTAGGCTAATCGTGGCTGTTTGGTTTGTGATAATATCATTTGCAGTATCTTCAGATTTCGCTGCAAGCTGAAATGTTGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGATATCAAGGGAATGGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370854" ref_strand="+" ref_description="SGN-E370854 [TUS-27-J17]">
      <seq>tggatcatttagttcagaggaccgatattgacacatcaagaatagtagtctttggaaggtcacttggaggagctgttggcactgttcttaccaaaaacaatcctgacaaggtagctgggctcattttggagaatactttcacctctatcctggatatggcaggagttctcttgccattcttgaagtgggtcattggtggcagtggctcaaagggtttcaagcttcttaactttgttgttcgatctccatggaataccattgatgtcattggtgagatcaggcaaccaatcctcttcctatctggattacaagatgagatggttccaccattccacatgcagatgctgtatgcaaaggcagcggcacgtaacaggcaatgcttatttgtggaatttcctagtgggatgcacatggatacctggttggcaggtggtgatcattattggaggacaattcagaaatatttggaagaaactgtcccagagaagaaggatgatgaatcaaagaaggattccgaactgtcctctaagcaaaatgtatcttcagatttcgctgcaagctgaaatgttgagtttcaggcagttcaaatgtaactttggattcgaggattcaaatacatttcttttgatgttgcagtgatgaagagcagtttgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="26422" stop="21350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26122" g_stop="26013" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26012" i_stop="24565" i_length="1448">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24564" g_stop="24400" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="275" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24399" i_stop="22660" i_length="1740">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22659" g_stop="22398" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="537" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22397" i_stop="21769" i_length="629">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21768" g_stop="21650" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="656" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E370854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26122" e_stop="26013"/>
          <exon e_start="24564" e_stop="24400"/>
          <exon e_start="22659" e_stop="22398"/>
          <exon e_start="21768" e_stop="21650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAGGTAATGTAGCAATTTATTTTTCTTTTTGTCATGCTGTTACGTCTAATAATGTTATAAAGCCTGATTATCTCTAATTTGTTTAGTTTCCTTTTTACTCCTTAAATTTGAGTTCAACATAGGTTCCATCACGGAAAGAGAATTTATAGTACTTTGTCAAGTTTCTTTCAAACTTATATGCTCTATGGGTGCTCTTGGCTCCACCTGGTTGAAGTAAATAACTTTAGAGGCACTCTTTCGAGCTTGATAGGAATACAAGCTTTCAAGCGAAAACTAAACTAATCTGAGTTCATCACCAGCATGAGAGGGGCAACTTATAAATATGACGAAGAAAAAAAGAACTATTTCTTTTCTAGAATAAAAACAAAGCTGCGTTTCTTTCCCTTTAGAGTAAAGAGAAATCTCTTCTGCACCTAAACTATTGACCGTAAGATAAGTTACTAGCTTGTAATATTGTAGATGTCTGATTTAATTCCTTTTTTTTTTCACTTCTTCAATGGATGAGTTTAGGAGAATGTTTGCTCCCATTTTTCTCAAATAAAATAGAAGTCCATATAATCTTATGATGTTAGTCTCTTGGGTGTATAACCTCTACGATTTATCTCATGACGGTGATGTTCTTTAAGTACATTATCCTCTTTTGCGCTATTTGTTCATTATGTAACTAGAAACTTTTGATGTGCTTCTAGTATTGAGACCCCATCAGAACCCGAGTTTGTTTATCTTACTCCATTTCCACATACTTTAATCTTCATCCAATATTACATCCAGTTCATGCATACAAGAAGAGTTTGGTATCTGAAAGAATGTAATAGTAGTCGAATGTTCAACAGAATCTTTATTTGTATTACAGAAATCATTAATTCCACATGCCAAGTGAAAAAATCTCCCTTAATGCAGTTCCATGGTTTGATGTGAGTGACCCAACGATCTAGATTTGGTAATTATATTAGTATTCATCAGTTGATCCCGCGTTTCTTAGATGATCCACAAATTGATATGCCTTGATTCCCGCGTTTCTTAGATGATCTACAAATTGATATTCCTTGATTATGGTTTTCTTGTTTGATATTCAAGTTCCTTGTTTATGATTTTCCTGTTTGATGTGTGAGGTGATCAGTTTATTTTTGAGGTTTTCCCACTGCCAATTACGTATAGTTGATTAAGCATGTTCTGGGTCAAGCTGCATAGAATAGAGTCTGTCTATTTTGTTTAGGGGAATCTATATGAACCTCTTTTTTGTTTCTTTCTGTTCTGTGTCTTTATCTTTCCGGGTTTTATTCCAAACTTTTCTGTTCCAAGGTGTGTAACTTGTACATGTGTTTTGACATTCAAATCCTAGTTTTCTTTCACTATCGTAGGTTGCGGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGTTTTTTGACATTCAAATCCTAGTTTTCTTTCACTAATGTAGGTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAGGTGAGGATGCATCTTTATAACTCTCTCTGTCCCATTTGAATTGACTTGAGTTTACTTTTTCTTCAGAGTAAACTTCATTTTTTTTGTTTTATTGAGTATACTAAAGGTAGAGAAAGTTGTGAAGATGTCACTCAAGTTTGTAAAGTTTAAGTTAAGTTCTTGGAGGGATAAAAATTATGTTTCTAGCAAATAGTTCATAATTTTTAGGATGGACTAAATAGAACTGGGTAATTAAGTTGGATTGAGGTAATATATTTCATGGTTTGACTAATAGCGAAGTGTTTTAAAGTAGTAACGTGGATAAGTCATTTCTGATCCTTTTTTCTGAGTAGGCATTTGGCCATGGAAACTAAATATTTTTCACTTTATTTGGGATTTCTGAAGTTGAAGTTGAAGATGGATTTGTGTATGGTTATAGCTTTTGCAAAGAATATTTGGTTGCTAATTTTCAAAAAAAGAATATTTGGCTTCTTGAATGTTTCTTTTCCATAGAACATGAAAATAATGAAATATGATTTGTACCCCTCAATTTTTAAAAAATAGCATAACCATCAAACGTAATGAATTTACATGAAACATACAATCTGATTTCTCTATAAGAGTAATATCTCGTAATGGATAGTCATATAATATCATAAATAGGATACCACGTTTTTAAAAAGTGAATCTTTGTAGAAAAAAAGAAATACAGAAATAGTCAGCTGGCTCCATTGATTTTGTTATCTACATTAACATTGGACCAAACAGACATAAAAGCACCAACAAAGTAATGGAACAGAAACTCTCCAAGAAATGAAAACCAGATCATACACAAAGCAGCCTAATTATCTACATACCTGTTTTACCATTTCAAAGGAACACAAAGAAAAATCAAAATCCAAGAGAAGTAAAAACAAGATTTCATAAGTAAAAGCACATACATATAATCAATGTTTTAACCTCCTATGTAAGCACTCATTTCAAAAAAATGCATAAAAGAGTGATACTTAATTTAGGCATGTTGCCAAGCAATTTCTTAAGTTCTGTTCTTCTTATAATTTCTTGGAAAGTGATCACTTGGATGGCTTAATAAAAACAAACTTTTTATAAAGTTCTGCACTTGTTAAAATTCCCTGGCTAGTGGCTGATTTAAACGGTCATTTTTTATAAAAACAAAACATTTAGGGCATTTTTTTTTTTAAAAAAGAGAAATAAATGCAATGGTCAAAAGTGAGATGGAAATAAGTGAAAACAAGTTTTGAGGTGTTTTCCGAATTTCAAATATAGCTTCAAGTTGTATTTGGAATTTTCATGGTTAATTGATGATTTTCAGATGAAATTTAGAAAAGAAAAAAGTGAATAATTCTGACGTATTCATTTACTATGAAATGCACTTGAATTGCATCTCAGTTGTATATTTGTAATTTCATAGATAAGATGCGATTGATGTGATATTGAGAGATCTAGTCACTGTTCTTGCACGTTTTGATAACAGCAGGGTTTCTTATCGACCATGAATCTGTATTTTATTATAGTTGCCTGAACCATCTTAGATTTTATTTTAACTTTGTGAAATAACTGTGTCTGCTAGCCTTTTATCTATTTATTGTTAAGTTGCTAGAAGCTGGTCGAAATTATGTTCTCTTCCCCCCTTTTTCAGAAGGAAGCTGGTTGTAATTATATTTCTGGCTTTTGTTGTCCTTGTTATGTTCAAGTTAGCTCAGACGTCTGGCTTATGTTATCTGATTGTTTTGAGTGCAGATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAATGCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAAACTGTCCCAGAGAAGAAGGATGATGAATCAAAGAAGGATTCCGAACTGTCCTCTAAGCAAAATGGTTAGTTGCAGATATCAACTTCATCTGCTATTGTTCTGCTATCTTTTCTTTGTTATATGGTTTTGGGCATCTTAATTATCGTCTAAGAAAATATTTGTGAAAACACAGATGATAAATCTTCTTTGAAGGATATTGTTAGTTAGGGTTCTAGAGGCTGCAATCCTTCTATATACCTGGACAGTCGGCCCCTTTTAAACTGTCTCGAAAAAAAAATTGCTCTGTCGAAGACTGGGTCAAGTATGACTGATCCCTCTAGAAATCTGAAAGGAAGTCATGTCCTATTTTATCAGCCTAAGGAATAGTCCATTTTGTTATGTCTAAAATCTATTTTCAAAATTAACTCATAAAATAGTATTTGGAAAAGACATTTGAGAGTATGATATCCAACAGGTATCTAATAATTCATAGAACAGTAAATGCTATAAATTCTTTTGATTTAGCTCCTGTTATAGCTCCTTTCTGAGACTACAAGATTGTTAAAGTATTACCTTATCCTGCTACCTCATATATCCATTTATCTTCACTTTGTGGATCATTGTTTCTCACTGTGTTGAATTTGAAAGCTGATGAACTTCAATTCTTGTCTAGGCTAATCGTGGCTGTTTGGTTTGTGATAATATCATTTGCAGTATCTTCAGATTTCGCTGCAAGCTGAAATGTTGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGA</genome_strand>
        <mrna_strand>TGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAATGCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAAACTGTCCCAGAGAAGAAGGATGATGAATCAAAGAAGGATTCCGAACTGTCCTCTAAGCAAAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTTCAGATTTCGCTGCAAGCTGAAATGTTGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248833" ref_strand="+" ref_description="SGN-E248833 [cLEF-49-G21]">
      <seq>ctaagaaaatatttgtgaaaacacagatgataaatcttctttgaaggatattgttagttagggttctagaggctgcaatccttctatatacctggacagtcggccccttttaaactgtctcgaaaaaaaaattgctctgtcgaagactgggtcaagtatgactgatccctctagaaatctgaaaggaagtcatgttctattttatcagcctaaggaatagtccattttgttatgtctaaaatctattttcaaaattaactcataaaatagtatttggaaaagacatttgatagtatgatatccaacaggtctctaataattcatagaacagtaaatgctataaattcttttgatttaactcctgttatagctcctttctgagactacaagattgctaaagtattaccttatcctgctacctcatatatccatttatcttcactttgtggatcattgtttctcactgtgttgaatttgaaagctgatgaacttcaattcttgtctaagctaatcctggctgtttggtttgtgataatatcatttgcagtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="22615" stop="21465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22315" g_stop="21765" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E248833" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22315" e_stop="21765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGAAAATATTTGTGAAAACACAGATGATAAATCTTCTTTGAAGGATATTGTTAGTTAGGGTTCTAGAGGCTGCAATCCTTCTATATACCTGGACAGTCGGCCCCTTTTAAACTGTCTCGAAAAAAAAATTGCTCTGTCGAAGACTGGGTCAAGTATGACTGATCCCTCTAGAAATCTGAAAGGAAGTCATGTCCTATTTTATCAGCCTAAGGAATAGTCCATTTTGTTATGTCTAAAATCTATTTTCAAAATTAACTCATAAAATAGTATTTGGAAAAGACATTTGAGAGTATGATATCCAACAGGTATCTAATAATTCATAGAACAGTAAATGCTATAAATTCTTTTGATTTAGCTCCTGTTATAGCTCCTTTCTGAGACTACAAGATTGTTAAAGTATTACCTTATCCTGCTACCTCATATATCCATTTATCTTCACTTTGTGGATCATTGTTTCTCACTGTGTTGAATTTGAAAGCTGATGAACTTCAATTCTTGTCTAGGCTAATCGTGGCTGTTTGGTTTGTGATAATATCATTTGCAGTATC</genome_strand>
        <mrna_strand>CTAAGAAAATATTTGTGAAAACACAGATGATAAATCTTCTTTGAAGGATATTGTTAGTTAGGGTTCTAGAGGCTGCAATCCTTCTATATACCTGGACAGTCGGCCCCTTTTAAACTGTCTCGAAAAAAAAATTGCTCTGTCGAAGACTGGGTCAAGTATGACTGATCCCTCTAGAAATCTGAAAGGAAGTCATGTTCTATTTTATCAGCCTAAGGAATAGTCCATTTTGTTATGTCTAAAATCTATTTTCAAAATTAACTCATAAAATAGTATTTGGAAAAGACATTTGATAGTATGATATCCAACAGGTCTCTAATAATTCATAGAACAGTAAATGCTATAAATTCTTTTGATTTAACTCCTGTTATAGCTCCTTTCTGAGACTACAAGATTGCTAAAGTATTACCTTATCCTGCTACCTCATATATCCATTTATCTTCACTTTGTGGATCATTGTTTCTCACTGTGTTGAATTTGAAAGCTGATGAACTTCAATTCTTGTCTAAGCTAATCCTGGCTGTTTGGTTTGTGATAATATCATTTGCAGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705377" ref_strand="+" ref_description="SGN-E705377 [FA26DH03]">
      <seq>cgctctctaaggcatatccaattactcccgctcgacttcgactcctttacgaagatgtttggctcagatcttcagacggtgttcgtcttcatgcttggttcatcaaactcttccctgactgcagaggtcctactatcatcttttttcaagagaatgcaggaaatattgcacatcgtcttgaaatggttcgcataatgttacaacgtttgcaatgcaatgtttttatgctttcttatcgaggttacggagccagtgatggatacccttctcaacatggaatcacaaaggatgctcaggctgcactggatcatttagttcacaggaccgatattgacacatcaagaatagtagtctttggaaggtcacttggaggagctgttggcactgttcttaccaaaaacaatcctgacaaggtagctgggctcattttggagaatactttcacctctatcctggatatggcaggagttctcttgccattcttgaagtgggtcattggtggcagtggctcaaagggtttcaagcttcttaactttgttgttcgatctccatggaataccattgatgtcattggtgagatcaggcaaccaatcctcttcctatctggattacaagatgagatggttccaccattccacatgcagatgctgtatgcaaaggcagcggcacgtaacaggcaatgcttatttgtggaatttcctagtgggatgcacatggatacctggttggcacgtggtgatcattattggaggacaattcagaaatatttggaagaaactgtcccagagaagaacgatgatgaatcaaagaaggattccgaactgtcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="27891" stop="22109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27593" g_stop="27468" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27467" i_stop="26616" i_length="852">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26615" g_stop="26580" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="162" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26579" i_stop="26446" i_length="134">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26445" g_stop="26367" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="241" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26366" i_stop="26269" i_length="98">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26268" g_stop="26214" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="296" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26213" i_stop="26130" i_length="84">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26129" g_stop="26013" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="413" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26012" i_stop="24565" i_length="1448">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24564" g_stop="24400" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="578" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24399" i_stop="22660" i_length="1740">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22659" g_stop="22409" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="829" r_length="251" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E705377" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27593" e_stop="27468"/>
          <exon e_start="26615" e_stop="26580"/>
          <exon e_start="26445" e_stop="26367"/>
          <exon e_start="26268" e_stop="26214"/>
          <exon e_start="26129" e_stop="26013"/>
          <exon e_start="24564" e_stop="24400"/>
          <exon e_start="22659" e_stop="22409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCACTAAGGCATATCCAATTACTCCCGCTCGACTTCGACTCCTTTACGAAGATGTTTGGCTCAGATCTTCAGACGGTGTTCGTCTTCATGCTTGGTTCATCAAACTCTTCCCTGACTGCAGAGGTCTCTCTTAAACTGCCTTTTCTTATGTTTTATCTACTCTAATTACACCAGATGGCCGTAATTTGTTTTCGATTTGTCATTTTCATCCATATTTTTTCAAGTTACTAGTGAACTTGTGGATGATTTTTGACCTAATTTCACTTGTACAACCTTTTTAGTTTATGTTTTACCTGAATTGTGCGAAAGAATGGATTAATGTTTATAGAAATAAGAGTTACTTTTTGAACGGAATAAGATTGGTTGATGCGGTTTTCTGATTTGTTCCTCAAATTTACTTGATAAATGATTCTTTGAGTAATTTATTTGTGCAAATGAGCTATGTTGTTCATGGAAAATGATTAATTCCTGGATCCCAAGAGTTTAGAATTAGTTGGTACCTATGTCTGCCAATAGTTTCGACAAAATCTAGTGGGGGCAAACTGTTAGAATGCTGCTACAGATAGATGCACATCAACATCTATCAGCGGAGATTAAAAATCCTGATTGTAAATTAGTGTATATGATAGTGGTTATTATGTTGCCAAGGCAAGAAGTATGGATGTGGTGGCAGGGTTGCTAGTTAACCATCTATCAGAGCAAGAATTGAAGTCAAATGCAATATCGGCATTCACCTTTGAACTCCAAGTCAGTATCTCATTTGAAGTTTTAAACTAATATATTTTCAGTACAGTTAGCAACCTAACCACCTAGCTGGAGCATGCACAGCTATGATGTTTCCGCATTGTTTTCTACTGATGTAGGAAGTGGTGCTTACAAGGATTTTAAACTAATTTGGATGTGTTGTCCACATATGATTAGTTTTTGTTTGCTGGTTAGCGTAATTTATGCTGAGATACTATTTTGGTTCTGCAGGTCCTACTATCATCTTTTTTCAAGAGAATGCAGGAAGTATCCTTTTGTTATAATGTCTTCTTGAATGATTGCAGACCTTCCTTTTCTTAATCTTCTTCTTGCACTCGTGTTGTAAAAGTCAACTTTATCTCTTTTGGTTATCCTGGTTATCCTTTACTAATTAATTGCAGATATTGCACATCGTCTTGAAATGGTTCGCATAATGTTACAACGTTTGCAATGCAATGTTTTTATGCTTTCTTATCGAGGGTATAAATCATTTCCCCTTATTTGTTAGTTTCCTGTCTGTGTTGTCTTTGATTAAACTAGTGTCTTTTTCTTTTTCTAATAATTTTGTTGTAACAAAGTTACGGAGCCAGTGATGGATACCCTTCTCAACATGGAATCACAAAGGATGCTCAGGTTTTGTTAGCTTTCTCAATTTCATAGATTTTGACCCAAACCTTATTTTTGAAATTACATAATTGTGCTTGTCTTGTTCAATAGGCTGCACTGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAGGTAATGTAGCAATTTATTTTTCTTTTTGTCATGCTGTTACGTCTAATAATGTTATAAAGCCTGATTATCTCTAATTTGTTTAGTTTCCTTTTTACTCCTTAAATTTGAGTTCAACATAGGTTCCATCACGGAAAGAGAATTTATAGTACTTTGTCAAGTTTCTTTCAAACTTATATGCTCTATGGGTGCTCTTGGCTCCACCTGGTTGAAGTAAATAACTTTAGAGGCACTCTTTCGAGCTTGATAGGAATACAAGCTTTCAAGCGAAAACTAAACTAATCTGAGTTCATCACCAGCATGAGAGGGGCAACTTATAAATATGACGAAGAAAAAAAGAACTATTTCTTTTCTAGAATAAAAACAAAGCTGCGTTTCTTTCCCTTTAGAGTAAAGAGAAATCTCTTCTGCACCTAAACTATTGACCGTAAGATAAGTTACTAGCTTGTAATATTGTAGATGTCTGATTTAATTCCTTTTTTTTTTCACTTCTTCAATGGATGAGTTTAGGAGAATGTTTGCTCCCATTTTTCTCAAATAAAATAGAAGTCCATATAATCTTATGATGTTAGTCTCTTGGGTGTATAACCTCTACGATTTATCTCATGACGGTGATGTTCTTTAAGTACATTATCCTCTTTTGCGCTATTTGTTCATTATGTAACTAGAAACTTTTGATGTGCTTCTAGTATTGAGACCCCATCAGAACCCGAGTTTGTTTATCTTACTCCATTTCCACATACTTTAATCTTCATCCAATATTACATCCAGTTCATGCATACAAGAAGAGTTTGGTATCTGAAAGAATGTAATAGTAGTCGAATGTTCAACAGAATCTTTATTTGTATTACAGAAATCATTAATTCCACATGCCAAGTGAAAAAATCTCCCTTAATGCAGTTCCATGGTTTGATGTGAGTGACCCAACGATCTAGATTTGGTAATTATATTAGTATTCATCAGTTGATCCCGCGTTTCTTAGATGATCCACAAATTGATATGCCTTGATTCCCGCGTTTCTTAGATGATCTACAAATTGATATTCCTTGATTATGGTTTTCTTGTTTGATATTCAAGTTCCTTGTTTATGATTTTCCTGTTTGATGTGTGAGGTGATCAGTTTATTTTTGAGGTTTTCCCACTGCCAATTACGTATAGTTGATTAAGCATGTTCTGGGTCAAGCTGCATAGAATAGAGTCTGTCTATTTTGTTTAGGGGAATCTATATGAACCTCTTTTTTGTTTCTTTCTGTTCTGTGTCTTTATCTTTCCGGGTTTTATTCCAAACTTTTCTGTTCCAAGGTGTGTAACTTGTACATGTGTTTTGACATTCAAATCCTAGTTTTCTTTCACTATCGTAGGTTGCGGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGTTTTTTGACATTCAAATCCTAGTTTTCTTTCACTAATGTAGGTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAGGTGAGGATGCATCTTTATAACTCTCTCTGTCCCATTTGAATTGACTTGAGTTTACTTTTTCTTCAGAGTAAACTTCATTTTTTTTGTTTTATTGAGTATACTAAAGGTAGAGAAAGTTGTGAAGATGTCACTCAAGTTTGTAAAGTTTAAGTTAAGTTCTTGGAGGGATAAAAATTATGTTTCTAGCAAATAGTTCATAATTTTTAGGATGGACTAAATAGAACTGGGTAATTAAGTTGGATTGAGGTAATATATTTCATGGTTTGACTAATAGCGAAGTGTTTTAAAGTAGTAACGTGGATAAGTCATTTCTGATCCTTTTTTCTGAGTAGGCATTTGGCCATGGAAACTAAATATTTTTCACTTTATTTGGGATTTCTGAAGTTGAAGTTGAAGATGGATTTGTGTATGGTTATAGCTTTTGCAAAGAATATTTGGTTGCTAATTTTCAAAAAAAGAATATTTGGCTTCTTGAATGTTTCTTTTCCATAGAACATGAAAATAATGAAATATGATTTGTACCCCTCAATTTTTAAAAAATAGCATAACCATCAAACGTAATGAATTTACATGAAACATACAATCTGATTTCTCTATAAGAGTAATATCTCGTAATGGATAGTCATATAATATCATAAATAGGATACCACGTTTTTAAAAAGTGAATCTTTGTAGAAAAAAAGAAATACAGAAATAGTCAGCTGGCTCCATTGATTTTGTTATCTACATTAACATTGGACCAAACAGACATAAAAGCACCAACAAAGTAATGGAACAGAAACTCTCCAAGAAATGAAAACCAGATCATACACAAAGCAGCCTAATTATCTACATACCTGTTTTACCATTTCAAAGGAACACAAAGAAAAATCAAAATCCAAGAGAAGTAAAAACAAGATTTCATAAGTAAAAGCACATACATATAATCAATGTTTTAACCTCCTATGTAAGCACTCATTTCAAAAAAATGCATAAAAGAGTGATACTTAATTTAGGCATGTTGCCAAGCAATTTCTTAAGTTCTGTTCTTCTTATAATTTCTTGGAAAGTGATCACTTGGATGGCTTAATAAAAACAAACTTTTTATAAAGTTCTGCACTTGTTAAAATTCCCTGGCTAGTGGCTGATTTAAACGGTCATTTTTTATAAAAACAAAACATTTAGGGCATTTTTTTTTTTAAAAAAGAGAAATAAATGCAATGGTCAAAAGTGAGATGGAAATAAGTGAAAACAAGTTTTGAGGTGTTTTCCGAATTTCAAATATAGCTTCAAGTTGTATTTGGAATTTTCATGGTTAATTGATGATTTTCAGATGAAATTTAGAAAAGAAAAAAGTGAATAATTCTGACGTATTCATTTACTATGAAATGCACTTGAATTGCATCTCAGTTGTATATTTGTAATTTCATAGATAAGATGCGATTGATGTGATATTGAGAGATCTAGTCACTGTTCTTGCACGTTTTGATAACAGCAGGGTTTCTTATCGACCATGAATCTGTATTTTATTATAGTTGCCTGAACCATCTTAGATTTTATTTTAACTTTGTGAAATAACTGTGTCTGCTAGCCTTTTATCTATTTATTGTTAAGTTGCTAGAAGCTGGTCGAAATTATGTTCTCTTCCCCCCTTTTTCAGAAGGAAGCTGGTTGTAATTATATTTCTGGCTTTTGTTGTCCTTGTTATGTTCAAGTTAGCTCAGACGTCTGGCTTATGTTATCTGATTGTTTTGAGTGCAGATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAATGCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAAACTGTCCCAGAGAAGAAGGATGATGAATCAAAGAAGGATTCCGAACTGTCCTC</genome_strand>
        <mrna_strand>CGCTCTCTAAGGCATATCCAATTACTCCCGCTCGACTTCGACTCCTTTACGAAGATGTTTGGCTCAGATCTTCAGACGGTGTTCGTCTTCATGCTTGGTTCATCAAACTCTTCCCTGACTGCAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTACTATCATCTTTTTTCAAGAGAATGCAGGAA......................................................................................................................................ATATTGCACATCGTCTTGAAATGGTTCGCATAATGTTACAACGTTTGCAATGCAATGTTTTTATGCTTTCTTATCGAGG..................................................................................................TTACGGAGCCAGTGATGGATACCCTTCTCAACATGGAATCACAAAGGATGCTCAG....................................................................................GCTGCACTGGATCATTTAGTTCACAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAATGCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCACGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAAACTGTCCCAGAGAAGAACGATGATGAATCAAAGAAGGATTCCGAACTGTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271216" ref_strand="+" ref_description="SGN-E271216 [cLEM-5-C24]">
      <seq>tggatcatttagttcagaggaccgatattgacacatcaagaatagtagtctttggaaggtcacttggaggagctgttggcactgttcttaccaaaaacaatcctgacaaggtagctgggctcattttggagaatactttcacctctatcctggatatggcaggagttctcttgccattcttgaagtgggtcattggtggcagtggctcaaagggtttcaagcttcttaactttgttgttcgatctccatggaataccattgatgtcattggtgagatcaggcaaccaatcctcttcctatctggattacaagatgagatggttccaccattccacatgcagatgctgtatgcaaaggcagcggcacgtaacaggcaatgcttatttgtggaatttcctagtgggatgcacatggatacctggttggcaggtggtgatcattattggaggacaattcagaaatatttggaagaaactgttccagagaagaaggatgatgaatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="26422" stop="22129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26122" g_stop="26013" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26012" i_stop="24565" i_length="1448">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24564" g_stop="24400" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="275" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24399" i_stop="22660" i_length="1740">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22659" g_stop="22429" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="506" r_length="231" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E271216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26122" e_stop="26013"/>
          <exon e_start="24564" e_stop="24400"/>
          <exon e_start="22659" e_stop="22429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAGGTAATGTAGCAATTTATTTTTCTTTTTGTCATGCTGTTACGTCTAATAATGTTATAAAGCCTGATTATCTCTAATTTGTTTAGTTTCCTTTTTACTCCTTAAATTTGAGTTCAACATAGGTTCCATCACGGAAAGAGAATTTATAGTACTTTGTCAAGTTTCTTTCAAACTTATATGCTCTATGGGTGCTCTTGGCTCCACCTGGTTGAAGTAAATAACTTTAGAGGCACTCTTTCGAGCTTGATAGGAATACAAGCTTTCAAGCGAAAACTAAACTAATCTGAGTTCATCACCAGCATGAGAGGGGCAACTTATAAATATGACGAAGAAAAAAAGAACTATTTCTTTTCTAGAATAAAAACAAAGCTGCGTTTCTTTCCCTTTAGAGTAAAGAGAAATCTCTTCTGCACCTAAACTATTGACCGTAAGATAAGTTACTAGCTTGTAATATTGTAGATGTCTGATTTAATTCCTTTTTTTTTTCACTTCTTCAATGGATGAGTTTAGGAGAATGTTTGCTCCCATTTTTCTCAAATAAAATAGAAGTCCATATAATCTTATGATGTTAGTCTCTTGGGTGTATAACCTCTACGATTTATCTCATGACGGTGATGTTCTTTAAGTACATTATCCTCTTTTGCGCTATTTGTTCATTATGTAACTAGAAACTTTTGATGTGCTTCTAGTATTGAGACCCCATCAGAACCCGAGTTTGTTTATCTTACTCCATTTCCACATACTTTAATCTTCATCCAATATTACATCCAGTTCATGCATACAAGAAGAGTTTGGTATCTGAAAGAATGTAATAGTAGTCGAATGTTCAACAGAATCTTTATTTGTATTACAGAAATCATTAATTCCACATGCCAAGTGAAAAAATCTCCCTTAATGCAGTTCCATGGTTTGATGTGAGTGACCCAACGATCTAGATTTGGTAATTATATTAGTATTCATCAGTTGATCCCGCGTTTCTTAGATGATCCACAAATTGATATGCCTTGATTCCCGCGTTTCTTAGATGATCTACAAATTGATATTCCTTGATTATGGTTTTCTTGTTTGATATTCAAGTTCCTTGTTTATGATTTTCCTGTTTGATGTGTGAGGTGATCAGTTTATTTTTGAGGTTTTCCCACTGCCAATTACGTATAGTTGATTAAGCATGTTCTGGGTCAAGCTGCATAGAATAGAGTCTGTCTATTTTGTTTAGGGGAATCTATATGAACCTCTTTTTTGTTTCTTTCTGTTCTGTGTCTTTATCTTTCCGGGTTTTATTCCAAACTTTTCTGTTCCAAGGTGTGTAACTTGTACATGTGTTTTGACATTCAAATCCTAGTTTTCTTTCACTATCGTAGGTTGCGGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGTTTTTTGACATTCAAATCCTAGTTTTCTTTCACTAATGTAGGTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAGGTGAGGATGCATCTTTATAACTCTCTCTGTCCCATTTGAATTGACTTGAGTTTACTTTTTCTTCAGAGTAAACTTCATTTTTTTTGTTTTATTGAGTATACTAAAGGTAGAGAAAGTTGTGAAGATGTCACTCAAGTTTGTAAAGTTTAAGTTAAGTTCTTGGAGGGATAAAAATTATGTTTCTAGCAAATAGTTCATAATTTTTAGGATGGACTAAATAGAACTGGGTAATTAAGTTGGATTGAGGTAATATATTTCATGGTTTGACTAATAGCGAAGTGTTTTAAAGTAGTAACGTGGATAAGTCATTTCTGATCCTTTTTTCTGAGTAGGCATTTGGCCATGGAAACTAAATATTTTTCACTTTATTTGGGATTTCTGAAGTTGAAGTTGAAGATGGATTTGTGTATGGTTATAGCTTTTGCAAAGAATATTTGGTTGCTAATTTTCAAAAAAAGAATATTTGGCTTCTTGAATGTTTCTTTTCCATAGAACATGAAAATAATGAAATATGATTTGTACCCCTCAATTTTTAAAAAATAGCATAACCATCAAACGTAATGAATTTACATGAAACATACAATCTGATTTCTCTATAAGAGTAATATCTCGTAATGGATAGTCATATAATATCATAAATAGGATACCACGTTTTTAAAAAGTGAATCTTTGTAGAAAAAAAGAAATACAGAAATAGTCAGCTGGCTCCATTGATTTTGTTATCTACATTAACATTGGACCAAACAGACATAAAAGCACCAACAAAGTAATGGAACAGAAACTCTCCAAGAAATGAAAACCAGATCATACACAAAGCAGCCTAATTATCTACATACCTGTTTTACCATTTCAAAGGAACACAAAGAAAAATCAAAATCCAAGAGAAGTAAAAACAAGATTTCATAAGTAAAAGCACATACATATAATCAATGTTTTAACCTCCTATGTAAGCACTCATTTCAAAAAAATGCATAAAAGAGTGATACTTAATTTAGGCATGTTGCCAAGCAATTTCTTAAGTTCTGTTCTTCTTATAATTTCTTGGAAAGTGATCACTTGGATGGCTTAATAAAAACAAACTTTTTATAAAGTTCTGCACTTGTTAAAATTCCCTGGCTAGTGGCTGATTTAAACGGTCATTTTTTATAAAAACAAAACATTTAGGGCATTTTTTTTTTTAAAAAAGAGAAATAAATGCAATGGTCAAAAGTGAGATGGAAATAAGTGAAAACAAGTTTTGAGGTGTTTTCCGAATTTCAAATATAGCTTCAAGTTGTATTTGGAATTTTCATGGTTAATTGATGATTTTCAGATGAAATTTAGAAAAGAAAAAAGTGAATAATTCTGACGTATTCATTTACTATGAAATGCACTTGAATTGCATCTCAGTTGTATATTTGTAATTTCATAGATAAGATGCGATTGATGTGATATTGAGAGATCTAGTCACTGTTCTTGCACGTTTTGATAACAGCAGGGTTTCTTATCGACCATGAATCTGTATTTTATTATAGTTGCCTGAACCATCTTAGATTTTATTTTAACTTTGTGAAATAACTGTGTCTGCTAGCCTTTTATCTATTTATTGTTAAGTTGCTAGAAGCTGGTCGAAATTATGTTCTCTTCCCCCCTTTTTCAGAAGGAAGCTGGTTGTAATTATATTTCTGGCTTTTGTTGTCCTTGTTATGTTCAAGTTAGCTCAGACGTCTGGCTTATGTTATCTGATTGTTTTGAGTGCAGATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAATGCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAAACTGTCCCAGAGAAGAAGGATGATGAATCAAAG</genome_strand>
        <mrna_strand>TGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAATGCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAAACTGTTCCAGAGAAGAAGGATGATGAATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270951" ref_strand="+" ref_description="SGN-E270951 [cLEM-22-A3]">
      <seq>atgtttttatgctttcttatcgaggttacggagccagtgatggatggccttctcaacatggaatcacaaaggatgctcaagctgcactggatcatttagttcagaggaccgatattgaccacatcaagaatagtagtctttggaaggtcacttggaggaactgttggcactgttcttaccaaaaacaatcctgacaaggtagctgggctcattttggagaatactttcacctctatcctggatatggcaggagttctcttgccattcttgaagtgggtcattggtggcagtggctcaaagggtttcaagcttcttaactttgttgttcgatctccatggaataccattgatgtcattggtgagatcaggcaaccaatcctcttcctatctggattacaagatgagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="26691" stop="22315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26391" g_stop="26367" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26366" i_stop="26269" i_length="98">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26268" g_stop="26214" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="80" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26213" i_stop="26130" i_length="84">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26129" g_stop="26013" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="198" r_length="118" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26012" i_stop="24565" i_length="1448">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24564" g_stop="24400" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="363" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24399" i_stop="22660" i_length="1740">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22659" g_stop="22615" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="408" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E270951" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26391" e_stop="26367"/>
          <exon e_start="26268" e_stop="26214"/>
          <exon e_start="26129" e_stop="26013"/>
          <exon e_start="24564" e_stop="24400"/>
          <exon e_start="22659" e_stop="22615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTTTATGCTTTCTTATCGAGGGTATAAATCATTTCCCCTTATTTGTTAGTTTCCTGTCTGTGTTGTCTTTGATTAAACTAGTGTCTTTTTCTTTTTCTAATAATTTTGTTGTAACAAAGTTACGGAGCCAGTGATGGATACCCTTCTCAACATGGAATCACAAAGGATGCTCAGGTTTTGTTAGCTTTCTCAATTTCATAGATTTTGACCCAAACCTTATTTTTGAAATTACATAATTGTGCTTGTCTTGTTCAATAGGCTGCACTGGATCATTTAGTTCAGAGGACCGATATTGA-CACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAGGTAATGTAGCAATTTATTTTTCTTTTTGTCATGCTGTTACGTCTAATAATGTTATAAAGCCTGATTATCTCTAATTTGTTTAGTTTCCTTTTTACTCCTTAAATTTGAGTTCAACATAGGTTCCATCACGGAAAGAGAATTTATAGTACTTTGTCAAGTTTCTTTCAAACTTATATGCTCTATGGGTGCTCTTGGCTCCACCTGGTTGAAGTAAATAACTTTAGAGGCACTCTTTCGAGCTTGATAGGAATACAAGCTTTCAAGCGAAAACTAAACTAATCTGAGTTCATCACCAGCATGAGAGGGGCAACTTATAAATATGACGAAGAAAAAAAGAACTATTTCTTTTCTAGAATAAAAACAAAGCTGCGTTTCTTTCCCTTTAGAGTAAAGAGAAATCTCTTCTGCACCTAAACTATTGACCGTAAGATAAGTTACTAGCTTGTAATATTGTAGATGTCTGATTTAATTCCTTTTTTTTTTCACTTCTTCAATGGATGAGTTTAGGAGAATGTTTGCTCCCATTTTTCTCAAATAAAATAGAAGTCCATATAATCTTATGATGTTAGTCTCTTGGGTGTATAACCTCTACGATTTATCTCATGACGGTGATGTTCTTTAAGTACATTATCCTCTTTTGCGCTATTTGTTCATTATGTAACTAGAAACTTTTGATGTGCTTCTAGTATTGAGACCCCATCAGAACCCGAGTTTGTTTATCTTACTCCATTTCCACATACTTTAATCTTCATCCAATATTACATCCAGTTCATGCATACAAGAAGAGTTTGGTATCTGAAAGAATGTAATAGTAGTCGAATGTTCAACAGAATCTTTATTTGTATTACAGAAATCATTAATTCCACATGCCAAGTGAAAAAATCTCCCTTAATGCAGTTCCATGGTTTGATGTGAGTGACCCAACGATCTAGATTTGGTAATTATATTAGTATTCATCAGTTGATCCCGCGTTTCTTAGATGATCCACAAATTGATATGCCTTGATTCCCGCGTTTCTTAGATGATCTACAAATTGATATTCCTTGATTATGGTTTTCTTGTTTGATATTCAAGTTCCTTGTTTATGATTTTCCTGTTTGATGTGTGAGGTGATCAGTTTATTTTTGAGGTTTTCCCACTGCCAATTACGTATAGTTGATTAAGCATGTTCTGGGTCAAGCTGCATAGAATAGAGTCTGTCTATTTTGTTTAGGGGAATCTATATGAACCTCTTTTTTGTTTCTTTCTGTTCTGTGTCTTTATCTTTCCGGGTTTTATTCCAAACTTTTCTGTTCCAAGGTGTGTAACTTGTACATGTGTTTTGACATTCAAATCCTAGTTTTCTTTCACTATCGTAGGTTGCGGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGTTTTTTGACATTCAAATCCTAGTTTTCTTTCACTAATGTAGGTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAGGTGAGGATGCATCTTTATAACTCTCTCTGTCCCATTTGAATTGACTTGAGTTTACTTTTTCTTCAGAGTAAACTTCATTTTTTTTGTTTTATTGAGTATACTAAAGGTAGAGAAAGTTGTGAAGATGTCACTCAAGTTTGTAAAGTTTAAGTTAAGTTCTTGGAGGGATAAAAATTATGTTTCTAGCAAATAGTTCATAATTTTTAGGATGGACTAAATAGAACTGGGTAATTAAGTTGGATTGAGGTAATATATTTCATGGTTTGACTAATAGCGAAGTGTTTTAAAGTAGTAACGTGGATAAGTCATTTCTGATCCTTTTTTCTGAGTAGGCATTTGGCCATGGAAACTAAATATTTTTCACTTTATTTGGGATTTCTGAAGTTGAAGTTGAAGATGGATTTGTGTATGGTTATAGCTTTTGCAAAGAATATTTGGTTGCTAATTTTCAAAAAAAGAATATTTGGCTTCTTGAATGTTTCTTTTCCATAGAACATGAAAATAATGAAATATGATTTGTACCCCTCAATTTTTAAAAAATAGCATAACCATCAAACGTAATGAATTTACATGAAACATACAATCTGATTTCTCTATAAGAGTAATATCTCGTAATGGATAGTCATATAATATCATAAATAGGATACCACGTTTTTAAAAAGTGAATCTTTGTAGAAAAAAAGAAATACAGAAATAGTCAGCTGGCTCCATTGATTTTGTTATCTACATTAACATTGGACCAAACAGACATAAAAGCACCAACAAAGTAATGGAACAGAAACTCTCCAAGAAATGAAAACCAGATCATACACAAAGCAGCCTAATTATCTACATACCTGTTTTACCATTTCAAAGGAACACAAAGAAAAATCAAAATCCAAGAGAAGTAAAAACAAGATTTCATAAGTAAAAGCACATACATATAATCAATGTTTTAACCTCCTATGTAAGCACTCATTTCAAAAAAATGCATAAAAGAGTGATACTTAATTTAGGCATGTTGCCAAGCAATTTCTTAAGTTCTGTTCTTCTTATAATTTCTTGGAAAGTGATCACTTGGATGGCTTAATAAAAACAAACTTTTTATAAAGTTCTGCACTTGTTAAAATTCCCTGGCTAGTGGCTGATTTAAACGGTCATTTTTTATAAAAACAAAACATTTAGGGCATTTTTTTTTTTAAAAAAGAGAAATAAATGCAATGGTCAAAAGTGAGATGGAAATAAGTGAAAACAAGTTTTGAGGTGTTTTCCGAATTTCAAATATAGCTTCAAGTTGTATTTGGAATTTTCATGGTTAATTGATGATTTTCAGATGAAATTTAGAAAAGAAAAAAGTGAATAATTCTGACGTATTCATTTACTATGAAATGCACTTGAATTGCATCTCAGTTGTATATTTGTAATTTCATAGATAAGATGCGATTGATGTGATATTGAGAGATCTAGTCACTGTTCTTGCACGTTTTGATAACAGCAGGGTTTCTTATCGACCATGAATCTGTATTTTATTATAGTTGCCTGAACCATCTTAGATTTTATTTTAACTTTGTGAAATAACTGTGTCTGCTAGCCTTTTATCTATTTATTGTTAAGTTGCTAGAAGCTGGTCGAAATTATGTTCTCTTCCCCCCTTTTTCAGAAGGAAGCTGGTTGTAATTATATTTCTGGCTTTTGTTGTCCTTGTTATGTTCAAGTTAGCTCAGACGTCTGGCTTATGTTATCTGATTGTTTTGAGTGCAGATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATG</genome_strand>
        <mrna_strand>ATGTTTTTATGCTTTCTTATCGAGG..................................................................................................TTACGGAGCCAGTGATGGATGGCCTTCTCAACATGGAATCACAAAGGATGCTCAA....................................................................................GCTGCACTGGATCATTTAGTTCAGAGGACCGATATTGACCACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAACTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348972" ref_strand="+" ref_description="SGN-E348972 [cTOF-29-B9]">
      <seq>acaagaatttcactcattttcctcctccaattgctactgtcaattcaaaaaagcttagcttgagggaacagaaatggtgtcgtacatgagcttgttgctgtacggagtgggaggaatagtggtcgccgggatggcaatactggtcgcctttcaggaaaaacttgtatatgttcccgtcttacctggactcactaaggcatatccaattactcccgctcgacttcgactcctttacgaagatgtttggctcagatcttcagacggtgttcgtcttcatgcttggttcatcaaactcttccctgactgcagaggtcctactatcatcttttttcaagagaatgcaggaaatattgcacatcgtcttgaaatggttcgcataatgttacaacgtttgcaatgcaatgtttttatgctttcttatcgaggttacggagccagtgatggatacccttctcaacatggaatcacaaaggatgctcaggctgcactggatcatttagttcagaggaccgatattgacacatcaagaatagtagtctttggaaggtcacttggaggaagctgttggcactgttcttaccaaaaacaatcctgacaaggtagctgggctcattttggagaatactttcacctctatcctggatatggcaggagttctcttgccattcttgaagtgggtcattggtggcagtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="28078" stop="24169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27778" g_stop="27468" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27467" i_stop="26616" i_length="852">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26615" g_stop="26580" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="347" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26579" i_stop="26446" i_length="134">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26445" g_stop="26367" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="426" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26366" i_stop="26269" i_length="98">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26268" g_stop="26214" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="481" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26213" i_stop="26130" i_length="84">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26129" g_stop="26013" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="599" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26012" i_stop="24565" i_length="1448">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24564" g_stop="24469" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="695" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E348972" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27778" e_stop="27468"/>
          <exon e_start="26615" e_stop="26580"/>
          <exon e_start="26445" e_stop="26367"/>
          <exon e_start="26268" e_stop="26214"/>
          <exon e_start="26129" e_stop="26013"/>
          <exon e_start="24564" e_stop="24469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAATTTCACTCATTTTCCTCCTCCAATTGCTACTGTCAATTCAAAAAAGCTTAGCTTGAGGGAACAGAAATGGTGTCGTACATGAGCTTGTTGCTGTACGGAGTGGGAGGAATAGTGGTCGCCGGGATGGCAATACTGGTCGCCTTTCAGGAAAAACTTGTATATGTTCCCGTCTTACCTGGACTCACTAAGGCATATCCAATTACTCCCGCTCGACTTCGACTCCTTTACGAAGATGTTTGGCTCAGATCTTCAGACGGTGTTCGTCTTCATGCTTGGTTCATCAAACTCTTCCCTGACTGCAGAGGTCTCTCTTAAACTGCCTTTTCTTATGTTTTATCTACTCTAATTACACCAGATGGCCGTAATTTGTTTTCGATTTGTCATTTTCATCCATATTTTTTCAAGTTACTAGTGAACTTGTGGATGATTTTTGACCTAATTTCACTTGTACAACCTTTTTAGTTTATGTTTTACCTGAATTGTGCGAAAGAATGGATTAATGTTTATAGAAATAAGAGTTACTTTTTGAACGGAATAAGATTGGTTGATGCGGTTTTCTGATTTGTTCCTCAAATTTACTTGATAAATGATTCTTTGAGTAATTTATTTGTGCAAATGAGCTATGTTGTTCATGGAAAATGATTAATTCCTGGATCCCAAGAGTTTAGAATTAGTTGGTACCTATGTCTGCCAATAGTTTCGACAAAATCTAGTGGGGGCAAACTGTTAGAATGCTGCTACAGATAGATGCACATCAACATCTATCAGCGGAGATTAAAAATCCTGATTGTAAATTAGTGTATATGATAGTGGTTATTATGTTGCCAAGGCAAGAAGTATGGATGTGGTGGCAGGGTTGCTAGTTAACCATCTATCAGAGCAAGAATTGAAGTCAAATGCAATATCGGCATTCACCTTTGAACTCCAAGTCAGTATCTCATTTGAAGTTTTAAACTAATATATTTTCAGTACAGTTAGCAACCTAACCACCTAGCTGGAGCATGCACAGCTATGATGTTTCCGCATTGTTTTCTACTGATGTAGGAAGTGGTGCTTACAAGGATTTTAAACTAATTTGGATGTGTTGTCCACATATGATTAGTTTTTGTTTGCTGGTTAGCGTAATTTATGCTGAGATACTATTTTGGTTCTGCAGGTCCTACTATCATCTTTTTTCAAGAGAATGCAGGAAGTATCCTTTTGTTATAATGTCTTCTTGAATGATTGCAGACCTTCCTTTTCTTAATCTTCTTCTTGCACTCGTGTTGTAAAAGTCAACTTTATCTCTTTTGGTTATCCTGGTTATCCTTTACTAATTAATTGCAGATATTGCACATCGTCTTGAAATGGTTCGCATAATGTTACAACGTTTGCAATGCAATGTTTTTATGCTTTCTTATCGAGGGTATAAATCATTTCCCCTTATTTGTTAGTTTCCTGTCTGTGTTGTCTTTGATTAAACTAGTGTCTTTTTCTTTTTCTAATAATTTTGTTGTAACAAAGTTACGGAGCCAGTGATGGATACCCTTCTCAACATGGAATCACAAAGGATGCTCAGGTTTTGTTAGCTTTCTCAATTTCATAGATTTTGACCCAAACCTTATTTTTGAAATTACATAATTGTGCTTGTCTTGTTCAATAGGCTGCACTGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGG-AGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAGGTAATGTAGCAATTTATTTTTCTTTTTGTCATGCTGTTACGTCTAATAATGTTATAAAGCCTGATTATCTCTAATTTGTTTAGTTTCCTTTTTACTCCTTAAATTTGAGTTCAACATAGGTTCCATCACGGAAAGAGAATTTATAGTACTTTGTCAAGTTTCTTTCAAACTTATATGCTCTATGGGTGCTCTTGGCTCCACCTGGTTGAAGTAAATAACTTTAGAGGCACTCTTTCGAGCTTGATAGGAATACAAGCTTTCAAGCGAAAACTAAACTAATCTGAGTTCATCACCAGCATGAGAGGGGCAACTTATAAATATGACGAAGAAAAAAAGAACTATTTCTTTTCTAGAATAAAAACAAAGCTGCGTTTCTTTCCCTTTAGAGTAAAGAGAAATCTCTTCTGCACCTAAACTATTGACCGTAAGATAAGTTACTAGCTTGTAATATTGTAGATGTCTGATTTAATTCCTTTTTTTTTTCACTTCTTCAATGGATGAGTTTAGGAGAATGTTTGCTCCCATTTTTCTCAAATAAAATAGAAGTCCATATAATCTTATGATGTTAGTCTCTTGGGTGTATAACCTCTACGATTTATCTCATGACGGTGATGTTCTTTAAGTACATTATCCTCTTTTGCGCTATTTGTTCATTATGTAACTAGAAACTTTTGATGTGCTTCTAGTATTGAGACCCCATCAGAACCCGAGTTTGTTTATCTTACTCCATTTCCACATACTTTAATCTTCATCCAATATTACATCCAGTTCATGCATACAAGAAGAGTTTGGTATCTGAAAGAATGTAATAGTAGTCGAATGTTCAACAGAATCTTTATTTGTATTACAGAAATCATTAATTCCACATGCCAAGTGAAAAAATCTCCCTTAATGCAGTTCCATGGTTTGATGTGAGTGACCCAACGATCTAGATTTGGTAATTATATTAGTATTCATCAGTTGATCCCGCGTTTCTTAGATGATCCACAAATTGATATGCCTTGATTCCCGCGTTTCTTAGATGATCTACAAATTGATATTCCTTGATTATGGTTTTCTTGTTTGATATTCAAGTTCCTTGTTTATGATTTTCCTGTTTGATGTGTGAGGTGATCAGTTTATTTTTGAGGTTTTCCCACTGCCAATTACGTATAGTTGATTAAGCATGTTCTGGGTCAAGCTGCATAGAATAGAGTCTGTCTATTTTGTTTAGGGGAATCTATATGAACCTCTTTTTTGTTTCTTTCTGTTCTGTGTCTTTATCTTTCCGGGTTTTATTCCAAACTTTTCTGTTCCAAGGTGTGTAACTTGTACATGTGTTTTGACATTCAAATCCTAGTTTTCTTTCACTATCGTAGGTTGCGGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGTTTTTTGACATTCAAATCCTAGTTTTCTTTCACTAATGTAGGTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGC</genome_strand>
        <mrna_strand>ACAAGAATTTCACTCATTTTCCTCCTCCAATTGCTACTGTCAATTCAAAAAAGCTTAGCTTGAGGGAACAGAAATGGTGTCGTACATGAGCTTGTTGCTGTACGGAGTGGGAGGAATAGTGGTCGCCGGGATGGCAATACTGGTCGCCTTTCAGGAAAAACTTGTATATGTTCCCGTCTTACCTGGACTCACTAAGGCATATCCAATTACTCCCGCTCGACTTCGACTCCTTTACGAAGATGTTTGGCTCAGATCTTCAGACGGTGTTCGTCTTCATGCTTGGTTCATCAAACTCTTCCCTGACTGCAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTACTATCATCTTTTTTCAAGAGAATGCAGGAA......................................................................................................................................ATATTGCACATCGTCTTGAAATGGTTCGCATAATGTTACAACGTTTGCAATGCAATGTTTTTATGCTTTCTTATCGAGG..................................................................................................TTACGGAGCCAGTGATGGATACCCTTCTCAACATGGAATCACAAAGGATGCTCAG....................................................................................GCTGCACTGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252846" ref_strand="+" ref_description="SGN-E252846 [cLEG-16-G16]">
      <seq>agtgtagacatgaggagttaacaaccattacacaagaatttcactcattttcctcctccaattgctactgtcaattcaaaaaagcttagcttgagggaacagaaatggtgtcgtacatgagcttgttgctgtacggagtgggaggaatagtggtcgccgggatggcaatactggtcgcctttcaggaaaaacttgtatatgttcccgtcttacctggactcactaaggcatatccaattactcccgctcgacttcgactcctttacgaagatgtttggctcagatcttcagacggtgttcgtcttcatgcttggttcatcaaactcttccctgactgcagaggtcctactatcatcttttttcaagagaatgcaggaaatattgcacatcgtcttgaaatggttcgcataatgttacaacgtttgcaatgcaatgtttttatgctttcttatcgaggttacggagccagtgatggatacccttctcaacatggaatcacaaaggatgctcangctgcactggatcatttagttcagaggaccgatattgacacatcaagaatagtagtctttggaaggtcacttggaggagctgttggcactgttcttaccaaaaacaatcctgacaaggtagctgggctcattttggagaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="28109" stop="24239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27809" g_stop="27468" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27467" i_stop="26616" i_length="852">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26615" g_stop="26580" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="378" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26579" i_stop="26446" i_length="134">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26445" g_stop="26367" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="457" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26366" i_stop="26269" i_length="98">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26268" g_stop="26214" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="512" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26213" i_stop="26130" i_length="84">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26129" g_stop="26013" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="629" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26012" i_stop="24565" i_length="1448">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24564" g_stop="24539" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="655" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E252846" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27809" e_stop="27468"/>
          <exon e_start="26615" e_stop="26580"/>
          <exon e_start="26445" e_stop="26367"/>
          <exon e_start="26268" e_stop="26214"/>
          <exon e_start="26129" e_stop="26013"/>
          <exon e_start="24564" e_stop="24539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTAGACATGAGGAGTTAACAACCATTACACAAGAATTTCACTCATTTTCCTCCTCCAATTGCTACTGTCAATTCAAAAAAGCTTAGCTTGAGGGAACAGAAATGGTGTCGTACATGAGCTTGTTGCTGTACGGAGTGGGAGGAATAGTGGTCGCCGGGATGGCAATACTGGTCGCCTTTCAGGAAAAACTTGTATATGTTCCCGTCTTACCTGGACTCACTAAGGCATATCCAATTACTCCCGCTCGACTTCGACTCCTTTACGAAGATGTTTGGCTCAGATCTTCAGACGGTGTTCGTCTTCATGCTTGGTTCATCAAACTCTTCCCTGACTGCAGAGGTCTCTCTTAAACTGCCTTTTCTTATGTTTTATCTACTCTAATTACACCAGATGGCCGTAATTTGTTTTCGATTTGTCATTTTCATCCATATTTTTTCAAGTTACTAGTGAACTTGTGGATGATTTTTGACCTAATTTCACTTGTACAACCTTTTTAGTTTATGTTTTACCTGAATTGTGCGAAAGAATGGATTAATGTTTATAGAAATAAGAGTTACTTTTTGAACGGAATAAGATTGGTTGATGCGGTTTTCTGATTTGTTCCTCAAATTTACTTGATAAATGATTCTTTGAGTAATTTATTTGTGCAAATGAGCTATGTTGTTCATGGAAAATGATTAATTCCTGGATCCCAAGAGTTTAGAATTAGTTGGTACCTATGTCTGCCAATAGTTTCGACAAAATCTAGTGGGGGCAAACTGTTAGAATGCTGCTACAGATAGATGCACATCAACATCTATCAGCGGAGATTAAAAATCCTGATTGTAAATTAGTGTATATGATAGTGGTTATTATGTTGCCAAGGCAAGAAGTATGGATGTGGTGGCAGGGTTGCTAGTTAACCATCTATCAGAGCAAGAATTGAAGTCAAATGCAATATCGGCATTCACCTTTGAACTCCAAGTCAGTATCTCATTTGAAGTTTTAAACTAATATATTTTCAGTACAGTTAGCAACCTAACCACCTAGCTGGAGCATGCACAGCTATGATGTTTCCGCATTGTTTTCTACTGATGTAGGAAGTGGTGCTTACAAGGATTTTAAACTAATTTGGATGTGTTGTCCACATATGATTAGTTTTTGTTTGCTGGTTAGCGTAATTTATGCTGAGATACTATTTTGGTTCTGCAGGTCCTACTATCATCTTTTTTCAAGAGAATGCAGGAAGTATCCTTTTGTTATAATGTCTTCTTGAATGATTGCAGACCTTCCTTTTCTTAATCTTCTTCTTGCACTCGTGTTGTAAAAGTCAACTTTATCTCTTTTGGTTATCCTGGTTATCCTTTACTAATTAATTGCAGATATTGCACATCGTCTTGAAATGGTTCGCATAATGTTACAACGTTTGCAATGCAATGTTTTTATGCTTTCTTATCGAGGGTATAAATCATTTCCCCTTATTTGTTAGTTTCCTGTCTGTGTTGTCTTTGATTAAACTAGTGTCTTTTTCTTTTTCTAATAATTTTGTTGTAACAAAGTTACGGAGCCAGTGATGGATACCCTTCTCAACATGGAATCACAAAGGATGCTCAGGTTTTGTTAGCTTTCTCAATTTCATAGATTTTGACCCAAACCTTATTTTTGAAATTACATAATTGTGCTTGTCTTGTTCAATAGGCTGCACTGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAGGTAATGTAGCAATTTATTTTTCTTTTTGTCATGCTGTTACGTCTAATAATGTTATAAAGCCTGATTATCTCTAATTTGTTTAGTTTCCTTTTTACTCCTTAAATTTGAGTTCAACATAGGTTCCATCACGGAAAGAGAATTTATAGTACTTTGTCAAGTTTCTTTCAAACTTATATGCTCTATGGGTGCTCTTGGCTCCACCTGGTTGAAGTAAATAACTTTAGAGGCACTCTTTCGAGCTTGATAGGAATACAAGCTTTCAAGCGAAAACTAAACTAATCTGAGTTCATCACCAGCATGAGAGGGGCAACTTATAAATATGACGAAGAAAAAAAGAACTATTTCTTTTCTAGAATAAAAACAAAGCTGCGTTTCTTTCCCTTTAGAGTAAAGAGAAATCTCTTCTGCACCTAAACTATTGACCGTAAGATAAGTTACTAGCTTGTAATATTGTAGATGTCTGATTTAATTCCTTTTTTTTTTCACTTCTTCAATGGATGAGTTTAGGAGAATGTTTGCTCCCATTTTTCTCAAATAAAATAGAAGTCCATATAATCTTATGATGTTAGTCTCTTGGGTGTATAACCTCTACGATTTATCTCATGACGGTGATGTTCTTTAAGTACATTATCCTCTTTTGCGCTATTTGTTCATTATGTAACTAGAAACTTTTGATGTGCTTCTAGTATTGAGACCCCATCAGAACCCGAGTTTGTTTATCTTACTCCATTTCCACATACTTTAATCTTCATCCAATATTACATCCAGTTCATGCATACAAGAAGAGTTTGGTATCTGAAAGAATGTAATAGTAGTCGAATGTTCAACAGAATCTTTATTTGTATTACAGAAATCATTAATTCCACATGCCAAGTGAAAAAATCTCCCTTAATGCAGTTCCATGGTTTGATGTGAGTGACCCAACGATCTAGATTTGGTAATTATATTAGTATTCATCAGTTGATCCCGCGTTTCTTAGATGATCCACAAATTGATATGCCTTGATTCCCGCGTTTCTTAGATGATCTACAAATTGATATTCCTTGATTATGGTTTTCTTGTTTGATATTCAAGTTCCTTGTTTATGATTTTCCTGTTTGATGTGTGAGGTGATCAGTTTATTTTTGAGGTTTTCCCACTGCCAATTACGTATAGTTGATTAAGCATGTTCTGGGTCAAGCTGCATAGAATAGAGTCTGTCTATTTTGTTTAGGGGAATCTATATGAACCTCTTTTTTGTTTCTTTCTGTTCTGTGTCTTTATCTTTCCGGGTTTTATTCCAAACTTTTCTGTTCCAAGGTGTGTAACTTGTACATGTGTTTTGACATTCAAATCCTAGTTTTCTTTCACTATCGTAGGTTGCGGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGTTTTTTGACATTCAAATCCTAGTTTTCTTTCACTAATGTAGGTAGCTGGGCTCATTTTGGAGAATAC</genome_strand>
        <mrna_strand>AGTGTAGACATGAGGAGTTAACAACCATTACACAAGAATTTCACTCATTTTCCTCCTCCAATTGCTACTGTCAATTCAAAAAAGCTTAGCTTGAGGGAACAGAAATGGTGTCGTACATGAGCTTGTTGCTGTACGGAGTGGGAGGAATAGTGGTCGCCGGGATGGCAATACTGGTCGCCTTTCAGGAAAAACTTGTATATGTTCCCGTCTTACCTGGACTCACTAAGGCATATCCAATTACTCCCGCTCGACTTCGACTCCTTTACGAAGATGTTTGGCTCAGATCTTCAGACGGTGTTCGTCTTCATGCTTGGTTCATCAAACTCTTCCCTGACTGCAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTACTATCATCTTTTTTCAAGAGAATGCAGGAA......................................................................................................................................ATATTGCACATCGTCTTGAAATGGTTCGCATAATGTTACAACGTTTGCAATGCAATGTTTTTATGCTTTCTTATCGAGG..................................................................................................TTACGGAGCCAGTGATGGATACCCTTCTCAACATGGAATCACAAAGGATGCTCAN....................................................................................GCTGCACTGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTGGGCTCATTTTGGAGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256160" ref_strand="+" ref_description="SGN-E256160 [cLEG-37-I15]">
      <seq>ggtggtgaaacaaaaaggcatatcagtgtagacatgaggagttaacaaccattacacaagaatttcactcattttcctcctccaattgctactgtcaattcaaaaaagcttagcttgagggaacagaaatggtgtcgtacatgagcttgttgctgtacggagtgggaggaatagtggtcgccgggatggcaatactggtcgcctttcaggaaaaacttgtatatgttcccgtcttacctggactcactaaggcatatccaattactcccgctcgacttcgactcctttacgaagatgtttggctcagatcttcagacggtgttcgtcttcatgcttggttcatcaaactcttccctgactgcagaggtcctactatcatcttttttcaagagaatgcaggaaatattgcacatcgtcttgaaatggttcgcataatgttacaacgtttgcaatgcaatgtttttatgctttcttatcgaggttacggagccagtgatggatacccttctcaacatggaatcacaaaggatgctcangctgcactggatcatttagttcagaggaccgatattgacacatcaagaatagtagtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="28133" stop="25769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27833" g_stop="27468" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27467" i_stop="26616" i_length="852">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26615" g_stop="26580" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="402" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26579" i_stop="26446" i_length="134">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26445" g_stop="26367" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="481" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26366" i_stop="26269" i_length="98">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26268" g_stop="26214" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="536" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26213" i_stop="26130" i_length="84">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26129" g_stop="26069" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="597" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E256160" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27833" e_stop="27468"/>
          <exon e_start="26615" e_stop="26580"/>
          <exon e_start="26445" e_stop="26367"/>
          <exon e_start="26268" e_stop="26214"/>
          <exon e_start="26129" e_stop="26069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTGAAACAAAAAGGCATATCAGTGTAGACATGAGGAGTTAACAACCATTACACAAGAATTTCACTCATTTTCCTCCTCCAATTGCTACTGTCAATTCAAAAAAGCTTAGCTTGAGGGAACAGAAATGGTGTCGTACATGAGCTTGTTGCTGTACGGAGTGGGAGGAATAGTGGTCGCCGGGATGGCAATACTGGTCGCCTTTCAGGAAAAACTTGTATATGTTCCCGTCTTACCTGGACTCACTAAGGCATATCCAATTACTCCCGCTCGACTTCGACTCCTTTACGAAGATGTTTGGCTCAGATCTTCAGACGGTGTTCGTCTTCATGCTTGGTTCATCAAACTCTTCCCTGACTGCAGAGGTCTCTCTTAAACTGCCTTTTCTTATGTTTTATCTACTCTAATTACACCAGATGGCCGTAATTTGTTTTCGATTTGTCATTTTCATCCATATTTTTTCAAGTTACTAGTGAACTTGTGGATGATTTTTGACCTAATTTCACTTGTACAACCTTTTTAGTTTATGTTTTACCTGAATTGTGCGAAAGAATGGATTAATGTTTATAGAAATAAGAGTTACTTTTTGAACGGAATAAGATTGGTTGATGCGGTTTTCTGATTTGTTCCTCAAATTTACTTGATAAATGATTCTTTGAGTAATTTATTTGTGCAAATGAGCTATGTTGTTCATGGAAAATGATTAATTCCTGGATCCCAAGAGTTTAGAATTAGTTGGTACCTATGTCTGCCAATAGTTTCGACAAAATCTAGTGGGGGCAAACTGTTAGAATGCTGCTACAGATAGATGCACATCAACATCTATCAGCGGAGATTAAAAATCCTGATTGTAAATTAGTGTATATGATAGTGGTTATTATGTTGCCAAGGCAAGAAGTATGGATGTGGTGGCAGGGTTGCTAGTTAACCATCTATCAGAGCAAGAATTGAAGTCAAATGCAATATCGGCATTCACCTTTGAACTCCAAGTCAGTATCTCATTTGAAGTTTTAAACTAATATATTTTCAGTACAGTTAGCAACCTAACCACCTAGCTGGAGCATGCACAGCTATGATGTTTCCGCATTGTTTTCTACTGATGTAGGAAGTGGTGCTTACAAGGATTTTAAACTAATTTGGATGTGTTGTCCACATATGATTAGTTTTTGTTTGCTGGTTAGCGTAATTTATGCTGAGATACTATTTTGGTTCTGCAGGTCCTACTATCATCTTTTTTCAAGAGAATGCAGGAAGTATCCTTTTGTTATAATGTCTTCTTGAATGATTGCAGACCTTCCTTTTCTTAATCTTCTTCTTGCACTCGTGTTGTAAAAGTCAACTTTATCTCTTTTGGTTATCCTGGTTATCCTTTACTAATTAATTGCAGATATTGCACATCGTCTTGAAATGGTTCGCATAATGTTACAACGTTTGCAATGCAATGTTTTTATGCTTTCTTATCGAGGGTATAAATCATTTCCCCTTATTTGTTAGTTTCCTGTCTGTGTTGTCTTTGATTAAACTAGTGTCTTTTTCTTTTTCTAATAATTTTGTTGTAACAAAGTTACGGAGCCAGTGATGGATACCCTTCTCAACATGGAATCACAAAGGATGCTCAGGTTTTGTTAGCTTTCTCAATTTCATAGATTTTGACCCAAACCTTATTTTTGAAATTACATAATTGTGCTTGTCTTGTTCAATAGGCTGCACTGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTG</genome_strand>
        <mrna_strand>GGTGGTGAAACAAAAAGGCATATCAGTGTAGACATGAGGAGTTAACAACCATTACACAAGAATTTCACTCATTTTCCTCCTCCAATTGCTACTGTCAATTCAAAAAAGCTTAGCTTGAGGGAACAGAAATGGTGTCGTACATGAGCTTGTTGCTGTACGGAGTGGGAGGAATAGTGGTCGCCGGGATGGCAATACTGGTCGCCTTTCAGGAAAAACTTGTATATGTTCCCGTCTTACCTGGACTCACTAAGGCATATCCAATTACTCCCGCTCGACTTCGACTCCTTTACGAAGATGTTTGGCTCAGATCTTCAGACGGTGTTCGTCTTCATGCTTGGTTCATCAAACTCTTCCCTGACTGCAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTACTATCATCTTTTTTCAAGAGAATGCAGGAA......................................................................................................................................ATATTGCACATCGTCTTGAAATGGTTCGCATAATGTTACAACGTTTGCAATGCAATGTTTTTATGCTTTCTTATCGAGG..................................................................................................TTACGGAGCCAGTGATGGATACCCTTCTCAACATGGAATCACAAAGGATGCTCAN....................................................................................GCTGCACTGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397678" ref_strand="+" ref_description="SGN-E397678 [TUS-46-I22]">
      <seq>cagtgtagacatgaggagttaacaaccattacacaagaatttcactcattttcctcctccaattgctactgtcaattcaaaaaagcttagcttgagggaacagaaatggtgtcgtacatgagcttgttgctgtacggagtgggaggaatagtggtcgccgggatggcaatactggtcgcctttcaggaaaaacttgtatatgttcccgtcttacctggactcactaaggcatatccaattactcccgctcgacttcgactcctttacgaagatgtttggctcagatcttcagacggtgttcgtcttcatgcttggttcatcaaactcttccctgactgcagaggtcctactatcatcttttttcaagagaatgcaggaaatattgcacatcgtcttgaaatggttcgcataatgttacaacgtttgcaatgcgatgtttttatgctttcttatcgaggttacggagccagtgatggatacccttctcaacatggaatcacaaaggatgctcaggctgcactggatcatttagttcagaggaccgatattgacacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="28110" stop="25786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27810" g_stop="27468" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27467" i_stop="26616" i_length="852">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26615" g_stop="26580" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="379" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26579" i_stop="26446" i_length="134">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26445" g_stop="26367" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="458" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26366" i_stop="26269" i_length="98">
            <donor d_prob="0.803" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26268" g_stop="26214" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="513" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26213" i_stop="26130" i_length="84">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26129" g_stop="26086" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="557" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E397678" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27810" e_stop="27468"/>
          <exon e_start="26615" e_stop="26580"/>
          <exon e_start="26445" e_stop="26367"/>
          <exon e_start="26268" e_stop="26214"/>
          <exon e_start="26129" e_stop="26086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGTAGACATGAGGAGTTAACAACCATTACACAAGAATTTCACTCATTTTCCTCCTCCAATTGCTACTGTCAATTCAAAAAAGCTTAGCTTGAGGGAACAGAAATGGTGTCGTACATGAGCTTGTTGCTGTACGGAGTGGGAGGAATAGTGGTCGCCGGGATGGCAATACTGGTCGCCTTTCAGGAAAAACTTGTATATGTTCCCGTCTTACCTGGACTCACTAAGGCATATCCAATTACTCCCGCTCGACTTCGACTCCTTTACGAAGATGTTTGGCTCAGATCTTCAGACGGTGTTCGTCTTCATGCTTGGTTCATCAAACTCTTCCCTGACTGCAGAGGTCTCTCTTAAACTGCCTTTTCTTATGTTTTATCTACTCTAATTACACCAGATGGCCGTAATTTGTTTTCGATTTGTCATTTTCATCCATATTTTTTCAAGTTACTAGTGAACTTGTGGATGATTTTTGACCTAATTTCACTTGTACAACCTTTTTAGTTTATGTTTTACCTGAATTGTGCGAAAGAATGGATTAATGTTTATAGAAATAAGAGTTACTTTTTGAACGGAATAAGATTGGTTGATGCGGTTTTCTGATTTGTTCCTCAAATTTACTTGATAAATGATTCTTTGAGTAATTTATTTGTGCAAATGAGCTATGTTGTTCATGGAAAATGATTAATTCCTGGATCCCAAGAGTTTAGAATTAGTTGGTACCTATGTCTGCCAATAGTTTCGACAAAATCTAGTGGGGGCAAACTGTTAGAATGCTGCTACAGATAGATGCACATCAACATCTATCAGCGGAGATTAAAAATCCTGATTGTAAATTAGTGTATATGATAGTGGTTATTATGTTGCCAAGGCAAGAAGTATGGATGTGGTGGCAGGGTTGCTAGTTAACCATCTATCAGAGCAAGAATTGAAGTCAAATGCAATATCGGCATTCACCTTTGAACTCCAAGTCAGTATCTCATTTGAAGTTTTAAACTAATATATTTTCAGTACAGTTAGCAACCTAACCACCTAGCTGGAGCATGCACAGCTATGATGTTTCCGCATTGTTTTCTACTGATGTAGGAAGTGGTGCTTACAAGGATTTTAAACTAATTTGGATGTGTTGTCCACATATGATTAGTTTTTGTTTGCTGGTTAGCGTAATTTATGCTGAGATACTATTTTGGTTCTGCAGGTCCTACTATCATCTTTTTTCAAGAGAATGCAGGAAGTATCCTTTTGTTATAATGTCTTCTTGAATGATTGCAGACCTTCCTTTTCTTAATCTTCTTCTTGCACTCGTGTTGTAAAAGTCAACTTTATCTCTTTTGGTTATCCTGGTTATCCTTTACTAATTAATTGCAGATATTGCACATCGTCTTGAAATGGTTCGCATAATGTTACAACGTTTGCAATGCAATGTTTTTATGCTTTCTTATCGAGGGTATAAATCATTTCCCCTTATTTGTTAGTTTCCTGTCTGTGTTGTCTTTGATTAAACTAGTGTCTTTTTCTTTTTCTAATAATTTTGTTGTAACAAAGTTACGGAGCCAGTGATGGATACCCTTCTCAACATGGAATCACAAAGGATGCTCAGGTTTTGTTAGCTTTCTCAATTTCATAGATTTTGACCCAAACCTTATTTTTGAAATTACATAATTGTGCTTGTCTTGTTCAATAGGCTGCACTGGATCATTTAGTTCAGAGGACCGATATTGACACATC</genome_strand>
        <mrna_strand>CAGTGTAGACATGAGGAGTTAACAACCATTACACAAGAATTTCACTCATTTTCCTCCTCCAATTGCTACTGTCAATTCAAAAAAGCTTAGCTTGAGGGAACAGAAATGGTGTCGTACATGAGCTTGTTGCTGTACGGAGTGGGAGGAATAGTGGTCGCCGGGATGGCAATACTGGTCGCCTTTCAGGAAAAACTTGTATATGTTCCCGTCTTACCTGGACTCACTAAGGCATATCCAATTACTCCCGCTCGACTTCGACTCCTTTACGAAGATGTTTGGCTCAGATCTTCAGACGGTGTTCGTCTTCATGCTTGGTTCATCAAACTCTTCCCTGACTGCAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTACTATCATCTTTTTTCAAGAGAATGCAGGAA......................................................................................................................................ATATTGCACATCGTCTTGAAATGGTTCGCATAATGTTACAACGTTTGCAATGCGATGTTTTTATGCTTTCTTATCGAGG..................................................................................................TTACGGAGCCAGTGATGGATACCCTTCTCAACATGGAATCACAAAGGATGCTCAG....................................................................................GCTGCACTGGATCATTTAGTTCAGAGGACCGATATTGACACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366212" ref_strand="+" ref_description="SGN-E366212 [cLPT-1-M15]">
      <seq>ggaaggagcttcgaaatctcaaaatggctgcaagggaaacaggtgctctcaaggaagccaaggacaagctcgaaaagaaagtggaagaacttacatggcggttgcaatttgagaaacgactcagggctgaattggaggagactaaagcccaagaagttgcaaagctacaggaggcactacatgcaatgcaaaagcaagtagaagaagcaaatgctaaggtggtccaagagcgggaggcagcacggagagcaattgaagaggcacctccagtcatcaaggagaccccagttatagttcaagacacagaaaaaataaataccctgtcagctgaagtagagaatttgaaggctttgctggcatccgaaaagaaagctacagaagaggctagagattcttccagggatgcagaggccaaacacacagagctggctagcaaactagaaactgccgagcgaaaagtagaccagcttcaagattctgtgcagaggcttgaagagaagctttccaatatggaatcagagaaccaagtgcttcgtcaacaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="43092" stop="45779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43392" g_stop="43417" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43418" i_stop="43516" i_length="99">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43517" g_stop="43615" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="125" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43616" i_stop="43697" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43698" g_stop="43919" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="347" r_length="222" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43920" i_stop="44918" i_length="999">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.651" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44919" g_stop="45058" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="487" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45059" i_stop="45420" i_length="362">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45421" g_stop="45479" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="546" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E366212" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43392" e_stop="43417"/>
          <exon e_start="43517" e_stop="43615"/>
          <exon e_start="43698" e_stop="43919"/>
          <exon e_start="44919" e_stop="45058"/>
          <exon e_start="45421" e_stop="45479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGAGCTTCGAAATCTCAAAATGGTTTGTTATGCATTTCTGTGATCATGTCTTGTAGAAATGTATTCATATCATCTGGTTCAGAGAAGGTAGATCATTGTTAATGAGAGATTACTTATACAGGCTGCAAGGGAAACAGGTGCTCTCAAGGAAGCCAAGGACAAGCTCGAAAAGAAAGTGGAAGAACTTACATGGCGGTTGCAATTTGAGAAACGACTCAGGGTAAGTTACTCTTATTTCTAGGGAAGTTTCTCCTTGGTTCATTTCCTAGATTCTGACACTATTGTTCTTTGGATTAATACAGGCTGAGTTGGAGGAGACTAAAGCCCAAGAAGTTGGAAAGCTACAGGAGGCACTGCATGCAATGCAAAAGCAAGTAGAAGAAGCAAATGCTAAAGTGGTCCAAGAGCGGGAGGCAGCACGGAGAGCAATTGAAGAGGCACCTCCAGTCATCAAGGAGACCCCAGTTATAGTTCAAGACACAGAAAAAATAAATACCCTGTCAGCTGAAGTAGAGAATTTGAAGGTATGGTTCCACTACCTCAAGGTTTATTATCACTATAGTTGGATGCAAACCTTAATAAAAACTGCCAACCAATTCTTTATTTCCTTGCGAGTTAGAGGGCATATGAATACAAATCTGTCCTCTAACCAAATTAGCCAGGAAGTTCAAGTTAGAGGGCATATGAATATGAAATAGCATATGATGTTGATTGTTGCAAATAAACCCCCCTTTCCAAACATCCAATTCTACATAAAGTTTGGATATCATAGAGAAGTCTTGCGCCTGCGGTTTGATAATTAGGGTGCTACAAGGGTTTGAACAACTTTAGGATGGACTTACCTGTTTTACTGAAAGGGAAAGAGGAAGCCCAGATGTCACTTCTTTGATGACGACCAAAAGTTGAGTGCTAGTACATCTGAGACTTTTTAATTGGCTTGTTGTAAATAGACCAACGGTTATGGAACAAAGGATTATCTCGGACCTAGACGAATACTGATCGATGTATGGAAATCCTATGGAACATATATGTCTTATCCTGCTAATGGCTATAGCGGGATTGCTAGACAAAAGCCTGGTATTGAAGTAAAAAAAGGTAGATAGGTGCCCCCATTATTCACTGACTTCAATCCATGCACCATCAGCCCTTAAGGATTTCAGTTGTGAAAAAAAGAAGATAGTTGGATTTGGAGCGCTACAACATACAATTCCTGTCACTGCATTTATTTGATCCGTTTTACTGGATAAACACTGTTACAAGTGCATATGCTTGACTTCAATGTTGCAAAATATTCTGTATCATGGTTTCTGCAAGTGTACTCCTTAAGTTCATTCTCCACCTTGAAGTTGCTTCTGAGCTGGTCTAGGAAGAGGAATTAACCTCAAAAGATTCCTATGATGTGCTAAATAATAAACCAATAATAAAAAGTTGATCTTTAGTAGGTTGCTATTTCGTGTAAAAGAACACATAAAGATGATCTCTATGTTTCTCTTGGTTGAAAAGTTGTTTCACGAACTATCCAGGCTTTGCTGGCATCCGAAAAGAAAGCTACAGAAGAGGCTAGAGATTCTTCCAGGGATGCAGAGGCCAAACACACAGAGCTGGCTAGCAAACTAGAAACTGCCGAGCGAAAAGTAGATCAGCTTCAAGATTCTGTGCAGAGGTTTGTAAATTAATATCGACTCCCTGTCTATGACGGAGTCAACTTATTCACTTCTCTTTATGGGTTTATTGTTGTTAGTCCGACCTTGTAATCAAGAGTCTTATGATTAAACATAGCGCTGATTTCCCACGATTCATGTCTTTTTTTATTTTTGATTGAACCTAAATAAGCTTATGGGCTTTGATCTTGTGATTTCTAGCTATGAACAACCAACATGCAGTATAACAGTAGACTTGCATCCTTAAATCATCGCATTTTGTGAACTGGACTTCCCGAACATAGGATTTTGCATTCTTAAAGAATGTAAAGATATTCTGACGCTCTCTATCATCTATTCCCTCTTTGTATGTCTCATGTTTCAGGCTTGAAGAGAAGCTTTCCAATATGGAATCAGAGAACCAAGTGCTTCGTCAACAAGCTT</genome_strand>
        <mrna_strand>GGAAGGAGCTTCGAAATCTCAAAATG...................................................................................................GCTGCAAGGGAAACAGGTGCTCTCAAGGAAGCCAAGGACAAGCTCGAAAAGAAAGTGGAAGAACTTACATGGCGGTTGCAATTTGAGAAACGACTCAGG..................................................................................GCTGAATTGGAGGAGACTAAAGCCCAAGAAGTTGCAAAGCTACAGGAGGCACTACATGCAATGCAAAAGCAAGTAGAAGAAGCAAATGCTAAGGTGGTCCAAGAGCGGGAGGCAGCACGGAGAGCAATTGAAGAGGCACCTCCAGTCATCAAGGAGACCCCAGTTATAGTTCAAGACACAGAAAAAATAAATACCCTGTCAGCTGAAGTAGAGAATTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGCTGGCATCCGAAAAGAAAGCTACAGAAGAGGCTAGAGATTCTTCCAGGGATGCAGAGGCCAAACACACAGAGCTGGCTAGCAAACTAGAAACTGCCGAGCGAAAAGTAGACCAGCTTCAAGATTCTGTGCAGAG..........................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGAAGCTTTCCAATATGGAATCAGAGAACCAAGTGCTTCGTCAACAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689295" ref_strand="+" ref_description="SGN-E689295 [t3_tus_80_P10]">
      <seq>cgttggagatccagttcagcctctttgtttggaaggatgtccctaggcttgcgaggttctcctcagagtgctgggctttcagttctcaatgggcgtatgcttgggagattggatgacttacgtcatgttgaggccaagtatcctgcgctgctgttcaagcagcagctgactgcctttttggagaaaatatatggaatgataagagacaatctgaagaaagagatatccccattgcttgggctatgtattcaggcaccaagaacatctcgtgcaagtttagtcaaaggaagatcccaagctaatgctgctgcccagcaagctctatttgctcattggcaaagcattgtaaaaagtttgaataactacttgatgatgatgaaatcaaaccatgttcctcccttcttagttcggaaggttttcactcaaatattttcctttatcaatgttcaacttttcaacagtcttcttttgcggcgtgagtgttgctcatttagtaatggagaatttgtgaaagccgggttggctgaattggaacagtggtgctgctatgcaactgaagaatttgtaggctcagcatgggacgagttgaaacacattagacaggcagttggattcctagttatccatcanaagcccaaaaagtcattgaatgaaatcactaatgaactttgtccagtgcttagcatacagcaactgtataggatcagcactatgtactgggatgacaaatacggaacccacactgtctcttcagatgttatttcaagtatgagagttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="46080" stop="48766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46376" g_stop="46420" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46421" i_stop="46530" i_length="110">
            <donor d_prob="0.892" d_score="0.91"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46531" g_stop="46737" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="252" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46738" i_stop="47318" i_length="581">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47319" g_stop="47456" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="390" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47457" i_stop="47543" i_length="87">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47544" g_stop="47614" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="461" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47615" i_stop="47706" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47707" g_stop="47806" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="561" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47807" i_stop="47879" i_length="73">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47880" g_stop="47936" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="618" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47937" i_stop="48024" i_length="88">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48025" g_stop="48081" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="675" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48082" i_stop="48232" i_length="151">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="48233" g_stop="48313" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="756" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="48314" i_stop="48441" i_length="128">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="48442" g_stop="48466" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="781" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E689295" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46376" e_stop="46420"/>
          <exon e_start="46531" e_stop="46737"/>
          <exon e_start="47319" e_stop="47456"/>
          <exon e_start="47544" e_stop="47614"/>
          <exon e_start="47707" e_stop="47806"/>
          <exon e_start="47880" e_stop="47936"/>
          <exon e_start="48025" e_stop="48081"/>
          <exon e_start="48233" e_stop="48313"/>
          <exon e_start="48442" e_stop="48466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCGGAGATCCAGTTCAGCCTCTTTGTTTGGAAGGATGTCCCAAGTATGAGCTCTATGGTTTATATTATGTTCTCTGGTTTCAGCTGGTTTGCCCAATTTCTTAGTCATATCATAGTTAATACTTCTCCTCTGCTATCTCTAATGTTTATGTAGGGCTTGCGAGGTTCTCCTCAGAGTGCTGGGCTTTCAGTTCTCAATGGGCGTATGCTTGGGAGATTGGATGACTTACGTCATGTTGAGGCCAAGTATCCTGCGCTGCTGTTCAAGCAGCAGCTGACTGCCTTTTTGGAGAAAATATATGGAATGATAAGAGACAATCTGAAGAAAGAGATATCCCCATTGCTTGGGCTATGTATTCAGGTGCATTACTTTTTATGAACTAGTATTATTTATGCCACAGGTCCAAGAAATCTTATGGAATAGAATGTTTACCGCTTGATGTGTAGTTTGAGCTAGTCCATATGCTTACTGTAGAATCGTTATGATAACTTGGGGTTTTTAGCGCTTGGGTAAGTTGATATACTGTGGGTACCACCGAGTAGTTCTCTGATGCTTGAACTAGTCAATGTGTTGAAGCAGTACAACCTTATAGATTGATTGTCACTTTGTACTGTAAATTATGCAATGCGCAAGCTCTTGAATGTTTCTGCCTGTTCAAGTCAGGAGTTCTCTTATCTATTAAAATGAGTAAAATAAATCAGACAAATCCAATGACTAGTGACAATACTTCTCTTCCAGCCCAAAGTGTTGGAACGAGTGGATCTTTCTAGGTTTAGTACTGTGCCTTGAAGCTGAACAATTTATAGAGAGACCACCTTTTCTCTTTGGGACACTGTTACCTTTTCTATTTTGTTCTCTCCCACTGTAATTATTTTTGCTGCCGAGAGAAAGAGGGAAGGAGTTAATTTTGTCAAATCGTTATCTGCATAATGTGTCTGCAGGCACCAAGAACATCTCGTGCAAGTTTAGTCAAAGGAAGATCCCAAGCTAATGCTGCTGCCCAGCAAGCTCTATTTGCTCATTGGCAAAGCATTGTAAAAAGTTTGAATAACTACTTGATGATGATGAAATCAAACCATGTAAGTTAAAGATTGAAGTGTTAAATAATATCACCTGTTATTTTGTCTCCTTGATGTTTATATGCTTCCATTGCTCCACCTATGTAGGTTCCTCCCTTCTTAGTTCGGAAGGTTTTCACTCAAATATTTTCCTTTATCAATGTTCAACTTTTCAACAGGTAAATAGTTGTATGATTTTACATTAAATAGATTTCATTCGGCTCATTGTCACCTTCTTATGTATCTGTGTGTTGACCTTCTTTACATTCAGTCTTCTTTTGCGGCGTGAGTGTTGCTCATTTAGTAATGGAGAATTTGTGAAAGCCGGGTTGGCTGAATTGGAACAGTGGTGCTGCTATGCAACTGAAGAAGTAAGCATGTTCTACTATATCTTTTCAGTTCTTAGTGCTATTCAGCATCTTACTTCTGTATTTTTATGTCCAGTTTGTAGGCTCAGCATGGGACGAGTTGAAACACATTAGACAGGCAGTTGGATTCCTAGTAAGAAACTGATTTCGGGGCTATGTGCTAAATGAATTTTTTATGAGGTGCTTTTATCTGACTCTTCTTTTCTCTCAACTTCTCGCAGGTTATCCATCAAAAGCCCAAAAAGTCATTGAATGAAATCACTAATGAACTTTGTCCAGTAAGGAGTCATTTTTTATATTTCTCCTCCATTCTTCCCATATTTTCTGCATAGAATTTGCTTCTTTCTTTTACCTATGAAAAGAAAAAAAGAAAGTTTGTTTCTTTCGACTTCTCGCATGCTGTTTTAATTTATTTTACTCTTTTATTAGGTGCTTAGCATACAGCAACTGTATAGGATCAGCACTATGTACTGGGATGACAAATACGGAACCCACACTGTCTCTTCAGATGTAAGTTCTTGCACGGTTGCACCTACAGTTTGGATACCTATGTAGGTTTACAGTAATTTGGGGGCTTGTTATTATACTATTTGCTTGGTTTTTGATTATGGGTTTTATGCTTTACCTTCAACTGATAGGTTATTTCAAGTATGAGAGTTATGA</genome_strand>
        <mrna_strand>CGTTGGAGATCCAGTTCAGCCTCTTTGTTTGGAAGGATGTCCCTA..............................................................................................................GGCTTGCGAGGTTCTCCTCAGAGTGCTGGGCTTTCAGTTCTCAATGGGCGTATGCTTGGGAGATTGGATGACTTACGTCATGTTGAGGCCAAGTATCCTGCGCTGCTGTTCAAGCAGCAGCTGACTGCCTTTTTGGAGAAAATATATGGAATGATAAGAGACAATCTGAAGAAAGAGATATCCCCATTGCTTGGGCTATGTATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAAGAACATCTCGTGCAAGTTTAGTCAAAGGAAGATCCCAAGCTAATGCTGCTGCCCAGCAAGCTCTATTTGCTCATTGGCAAAGCATTGTAAAAAGTTTGAATAACTACTTGATGATGATGAAATCAAACCAT.......................................................................................GTTCCTCCCTTCTTAGTTCGGAAGGTTTTCACTCAAATATTTTCCTTTATCAATGTTCAACTTTTCAACAG............................................................................................TCTTCTTTTGCGGCGTGAGTGTTGCTCATTTAGTAATGGAGAATTTGTGAAAGCCGGGTTGGCTGAATTGGAACAGTGGTGCTGCTATGCAACTGAAGAA.........................................................................TTTGTAGGCTCAGCATGGGACGAGTTGAAACACATTAGACAGGCAGTTGGATTCCTA........................................................................................GTTATCCATCANAAGCCCAAAAAGTCATTGAATGAAATCACTAATGAACTTTGTCCA.......................................................................................................................................................GTGCTTAGCATACAGCAACTGTATAGGATCAGCACTATGTACTGGGATGACAAATACGGAACCCACACTGTCTCTTCAGAT................................................................................................................................GTTATTTCAAGTATGAGAGTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326155" ref_strand="+" ref_description="SGN-E326155 [cTOC-16-E1]">
      <seq>ggagatccagttcagcctctttgtttggaaggatgtcccaaggcttgcgaggttctcctcagagtgctgggctttcagttctcaatgggcgtatgcttgggagattggatgacttacgtcatgttgaggccaagtatcctgcgctgctgttcaagcagcagctgactgcctttttggagaaaatatatggaatgataagagacaatctgaagaaagagatatccccattgcttgggctatgtattcaggcaccaagaacatctcgtgcaagtttagtcaaaggaagatcccaagctaatgctgctgcccagcaagctctatttgctcattggcaaagcattgtaaaaagtttgaataactacttgatgatgatgaaatcaaaccatgttcctcccttcttagttcggaagggtttcactcaaatattttcctttatcaatggtcaacttttcaacagtcttcttttgcggcgtgagtgttgctcatttaataatggagaatttgtgaaagccgggttggctgaattggaacagtggtgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="46080" stop="48091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46380" g_stop="46420" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46421" i_stop="46530" i_length="110">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46531" g_stop="46737" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="248" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46738" i_stop="47318" i_length="581">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47319" g_stop="47456" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="386" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47457" i_stop="47543" i_length="87">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47544" g_stop="47614" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="457" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47615" i_stop="47706" i_length="92">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.426" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47707" g_stop="47791" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="542" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E326155" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46380" e_stop="46420"/>
          <exon e_start="46531" e_stop="46737"/>
          <exon e_start="47319" e_stop="47456"/>
          <exon e_start="47544" e_stop="47614"/>
          <exon e_start="47707" e_stop="47791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATCCAGTTCAGCCTCTTTGTTTGGAAGGATGTCCCAAGTATGAGCTCTATGGTTTATATTATGTTCTCTGGTTTCAGCTGGTTTGCCCAATTTCTTAGTCATATCATAGTTAATACTTCTCCTCTGCTATCTCTAATGTTTATGTAGGGCTTGCGAGGTTCTCCTCAGAGTGCTGGGCTTTCAGTTCTCAATGGGCGTATGCTTGGGAGATTGGATGACTTACGTCATGTTGAGGCCAAGTATCCTGCGCTGCTGTTCAAGCAGCAGCTGACTGCCTTTTTGGAGAAAATATATGGAATGATAAGAGACAATCTGAAGAAAGAGATATCCCCATTGCTTGGGCTATGTATTCAGGTGCATTACTTTTTATGAACTAGTATTATTTATGCCACAGGTCCAAGAAATCTTATGGAATAGAATGTTTACCGCTTGATGTGTAGTTTGAGCTAGTCCATATGCTTACTGTAGAATCGTTATGATAACTTGGGGTTTTTAGCGCTTGGGTAAGTTGATATACTGTGGGTACCACCGAGTAGTTCTCTGATGCTTGAACTAGTCAATGTGTTGAAGCAGTACAACCTTATAGATTGATTGTCACTTTGTACTGTAAATTATGCAATGCGCAAGCTCTTGAATGTTTCTGCCTGTTCAAGTCAGGAGTTCTCTTATCTATTAAAATGAGTAAAATAAATCAGACAAATCCAATGACTAGTGACAATACTTCTCTTCCAGCCCAAAGTGTTGGAACGAGTGGATCTTTCTAGGTTTAGTACTGTGCCTTGAAGCTGAACAATTTATAGAGAGACCACCTTTTCTCTTTGGGACACTGTTACCTTTTCTATTTTGTTCTCTCCCACTGTAATTATTTTTGCTGCCGAGAGAAAGAGGGAAGGAGTTAATTTTGTCAAATCGTTATCTGCATAATGTGTCTGCAGGCACCAAGAACATCTCGTGCAAGTTTAGTCAAAGGAAGATCCCAAGCTAATGCTGCTGCCCAGCAAGCTCTATTTGCTCATTGGCAAAGCATTGTAAAAAGTTTGAATAACTACTTGATGATGATGAAATCAAACCATGTAAGTTAAAGATTGAAGTGTTAAATAATATCACCTGTTATTTTGTCTCCTTGATGTTTATATGCTTCCATTGCTCCACCTATGTAGGTTCCTCCCTTCTTAGTTCGGAAGGTTTTCACTCAAATATTTTCCTTTATCAATGTTCAACTTTTCAACAGGTAAATAGTTGTATGATTTTACATTAAATAGATTTCATTCGGCTCATTGTCACCTTCTTATGTATCTGTGTGTTGACCTTCTTTACATTCAGTCTTCTTTTGCGGCGTGAGTGTTGCTCATTTAGTAATGGAGAATTTGTGAAAGCCGGGTTGGCTGAATTGGAACAGTGGTGCTGC</genome_strand>
        <mrna_strand>GGAGATCCAGTTCAGCCTCTTTGTTTGGAAGGATGTCCCAA..............................................................................................................GGCTTGCGAGGTTCTCCTCAGAGTGCTGGGCTTTCAGTTCTCAATGGGCGTATGCTTGGGAGATTGGATGACTTACGTCATGTTGAGGCCAAGTATCCTGCGCTGCTGTTCAAGCAGCAGCTGACTGCCTTTTTGGAGAAAATATATGGAATGATAAGAGACAATCTGAAGAAAGAGATATCCCCATTGCTTGGGCTATGTATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAAGAACATCTCGTGCAAGTTTAGTCAAAGGAAGATCCCAAGCTAATGCTGCTGCCCAGCAAGCTCTATTTGCTCATTGGCAAAGCATTGTAAAAAGTTTGAATAACTACTTGATGATGATGAAATCAAACCAT.......................................................................................GTTCCTCCCTTCTTAGTTCGGAAGGGTTTCACTCAAATATTTTCCTTTATCAATGGTCAACTTTTCAACAG............................................................................................TCTTCTTTTGCGGCGTGAGTGTTGCTCATTTAATAATGGAGAATTTGTGAAAGCCGGGTTGGCTGAATTGGAACAGTGGTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254567" ref_strand="+" ref_description="SGN-E254567 [cLEG-29-N5]">
      <seq>gcctttttggagaaaatattggaatgataagagacaatctgaagaaagagatgtccccattgcttgggctatgtattcaggcaccaagaacatctcgtgcaagtttagtcaaaggaagatcccaagctaatgctgctgcccagcaagctctatttgctcattggcaaagcattgtaaaaagtttgaataactacttgatgatgatgaaatcaaaccatgttcctcccttcttagttcggaaggttttcactcaaatattttcctttatcaatgttcaacttttcaacagtcttcttttgcggcgtgagtgttgctcatttagtaatggagaatttgtgaaagccgggttggctgaattggaacagtggtgctgctatgcaactgaagaatttgtaggctcagcatgggacgagttgaaacacattagacaggcagttggattcctagttatccatcaaaagcccaaaaagtcattgaatgaaatcactaatgaactttgtccagtgcttagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="46357" stop="48383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46657" g_stop="46737" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46738" i_stop="47318" i_length="581">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47319" g_stop="47456" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="218" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47457" i_stop="47543" i_length="87">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47544" g_stop="47614" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="289" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47615" i_stop="47706" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47707" g_stop="47806" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="389" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47807" i_stop="47879" i_length="73">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47880" g_stop="47936" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="446" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47937" i_stop="48024" i_length="88">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48025" g_stop="48081" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="503" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48082" i_stop="48232" i_length="151">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48233" g_stop="48242" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="513" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E254567" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46657" e_stop="46737"/>
          <exon e_start="47319" e_stop="47456"/>
          <exon e_start="47544" e_stop="47614"/>
          <exon e_start="47707" e_stop="47806"/>
          <exon e_start="47880" e_stop="47936"/>
          <exon e_start="48025" e_stop="48081"/>
          <exon e_start="48233" e_stop="48242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTTGGAGAAAATATATGGAATGATAAGAGACAATCTGAAGAAAGAGATATCCCCATTGCTTGGGCTATGTATTCAGGTGCATTACTTTTTATGAACTAGTATTATTTATGCCACAGGTCCAAGAAATCTTATGGAATAGAATGTTTACCGCTTGATGTGTAGTTTGAGCTAGTCCATATGCTTACTGTAGAATCGTTATGATAACTTGGGGTTTTTAGCGCTTGGGTAAGTTGATATACTGTGGGTACCACCGAGTAGTTCTCTGATGCTTGAACTAGTCAATGTGTTGAAGCAGTACAACCTTATAGATTGATTGTCACTTTGTACTGTAAATTATGCAATGCGCAAGCTCTTGAATGTTTCTGCCTGTTCAAGTCAGGAGTTCTCTTATCTATTAAAATGAGTAAAATAAATCAGACAAATCCAATGACTAGTGACAATACTTCTCTTCCAGCCCAAAGTGTTGGAACGAGTGGATCTTTCTAGGTTTAGTACTGTGCCTTGAAGCTGAACAATTTATAGAGAGACCACCTTTTCTCTTTGGGACACTGTTACCTTTTCTATTTTGTTCTCTCCCACTGTAATTATTTTTGCTGCCGAGAGAAAGAGGGAAGGAGTTAATTTTGTCAAATCGTTATCTGCATAATGTGTCTGCAGGCACCAAGAACATCTCGTGCAAGTTTAGTCAAAGGAAGATCCCAAGCTAATGCTGCTGCCCAGCAAGCTCTATTTGCTCATTGGCAAAGCATTGTAAAAAGTTTGAATAACTACTTGATGATGATGAAATCAAACCATGTAAGTTAAAGATTGAAGTGTTAAATAATATCACCTGTTATTTTGTCTCCTTGATGTTTATATGCTTCCATTGCTCCACCTATGTAGGTTCCTCCCTTCTTAGTTCGGAAGGTTTTCACTCAAATATTTTCCTTTATCAATGTTCAACTTTTCAACAGGTAAATAGTTGTATGATTTTACATTAAATAGATTTCATTCGGCTCATTGTCACCTTCTTATGTATCTGTGTGTTGACCTTCTTTACATTCAGTCTTCTTTTGCGGCGTGAGTGTTGCTCATTTAGTAATGGAGAATTTGTGAAAGCCGGGTTGGCTGAATTGGAACAGTGGTGCTGCTATGCAACTGAAGAAGTAAGCATGTTCTACTATATCTTTTCAGTTCTTAGTGCTATTCAGCATCTTACTTCTGTATTTTTATGTCCAGTTTGTAGGCTCAGCATGGGACGAGTTGAAACACATTAGACAGGCAGTTGGATTCCTAGTAAGAAACTGATTTCGGGGCTATGTGCTAAATGAATTTTTTATGAGGTGCTTTTATCTGACTCTTCTTTTCTCTCAACTTCTCGCAGGTTATCCATCAAAAGCCCAAAAAGTCATTGAATGAAATCACTAATGAACTTTGTCCAGTAAGGAGTCATTTTTTATATTTCTCCTCCATTCTTCCCATATTTTCTGCATAGAATTTGCTTCTTTCTTTTACCTATGAAAAGAAAAAAAGAAAGTTTGTTTCTTTCGACTTCTCGCATGCTGTTTTAATTTATTTTACTCTTTTATTAGGTGCTTAGCA</genome_strand>
        <mrna_strand>GCCTTTTTGGAGAAAATAT-TGGAATGATAAGAGACAATCTGAAGAAAGAGATGTCCCCATTGCTTGGGCTATGTATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAAGAACATCTCGTGCAAGTTTAGTCAAAGGAAGATCCCAAGCTAATGCTGCTGCCCAGCAAGCTCTATTTGCTCATTGGCAAAGCATTGTAAAAAGTTTGAATAACTACTTGATGATGATGAAATCAAACCAT.......................................................................................GTTCCTCCCTTCTTAGTTCGGAAGGTTTTCACTCAAATATTTTCCTTTATCAATGTTCAACTTTTCAACAG............................................................................................TCTTCTTTTGCGGCGTGAGTGTTGCTCATTTAGTAATGGAGAATTTGTGAAAGCCGGGTTGGCTGAATTGGAACAGTGGTGCTGCTATGCAACTGAAGAA.........................................................................TTTGTAGGCTCAGCATGGGACGAGTTGAAACACATTAGACAGGCAGTTGGATTCCTA........................................................................................GTTATCCATCAAAAGCCCAAAAAGTCATTGAATGAAATCACTAATGAACTTTGTCCA.......................................................................................................................................................GTGCTTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254564" ref_strand="+" ref_description="SGN-E254564 [cLEG-29-L5]">
      <seq>taagagacaatctgaagaaagagatgtccccattgcttggggtatgtattcaggcaccaagaacatctcgtgcaagtttagtcaaaggaagatcccaagctaatgctgctgcccagcaagctctatttgctcattggcaaagcattgtaaaaagtttgaataactacttgatgatgatgaaatcaaaccatgttcctcccttcttagttcggaaggttttcactcaaatattttcctttatcaatgttcaacttttcaacagtcttcttttgcggcgtgagtgttgctcatttagtaatggagaatttgtgaaagccgggttggctgaattggaacagtggtgctgctatgcaactgaagaatttgtaggctcagcatgggacgagttgaaacacattagacaggcagttggattcctagttatccatcaaaagcccaaaaagtcattgaatgaaatcactaatgaactttgtccagtgcttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="46385" stop="48383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46685" g_stop="46737" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46738" i_stop="47318" i_length="581">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47319" g_stop="47456" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="191" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47457" i_stop="47543" i_length="87">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47544" g_stop="47614" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="262" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47615" i_stop="47706" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47707" g_stop="47806" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="362" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47807" i_stop="47879" i_length="73">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47880" g_stop="47936" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="419" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47937" i_stop="48024" i_length="88">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48025" g_stop="48081" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="476" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48082" i_stop="48232" i_length="151">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48233" g_stop="48240" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="484" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E254564" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46685" e_stop="46737"/>
          <exon e_start="47319" e_stop="47456"/>
          <exon e_start="47544" e_stop="47614"/>
          <exon e_start="47707" e_stop="47806"/>
          <exon e_start="47880" e_stop="47936"/>
          <exon e_start="48025" e_stop="48081"/>
          <exon e_start="48233" e_stop="48240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAGACAATCTGAAGAAAGAGATATCCCCATTGCTTGGGCTATGTATTCAGGTGCATTACTTTTTATGAACTAGTATTATTTATGCCACAGGTCCAAGAAATCTTATGGAATAGAATGTTTACCGCTTGATGTGTAGTTTGAGCTAGTCCATATGCTTACTGTAGAATCGTTATGATAACTTGGGGTTTTTAGCGCTTGGGTAAGTTGATATACTGTGGGTACCACCGAGTAGTTCTCTGATGCTTGAACTAGTCAATGTGTTGAAGCAGTACAACCTTATAGATTGATTGTCACTTTGTACTGTAAATTATGCAATGCGCAAGCTCTTGAATGTTTCTGCCTGTTCAAGTCAGGAGTTCTCTTATCTATTAAAATGAGTAAAATAAATCAGACAAATCCAATGACTAGTGACAATACTTCTCTTCCAGCCCAAAGTGTTGGAACGAGTGGATCTTTCTAGGTTTAGTACTGTGCCTTGAAGCTGAACAATTTATAGAGAGACCACCTTTTCTCTTTGGGACACTGTTACCTTTTCTATTTTGTTCTCTCCCACTGTAATTATTTTTGCTGCCGAGAGAAAGAGGGAAGGAGTTAATTTTGTCAAATCGTTATCTGCATAATGTGTCTGCAGGCACCAAGAACATCTCGTGCAAGTTTAGTCAAAGGAAGATCCCAAGCTAATGCTGCTGCCCAGCAAGCTCTATTTGCTCATTGGCAAAGCATTGTAAAAAGTTTGAATAACTACTTGATGATGATGAAATCAAACCATGTAAGTTAAAGATTGAAGTGTTAAATAATATCACCTGTTATTTTGTCTCCTTGATGTTTATATGCTTCCATTGCTCCACCTATGTAGGTTCCTCCCTTCTTAGTTCGGAAGGTTTTCACTCAAATATTTTCCTTTATCAATGTTCAACTTTTCAACAGGTAAATAGTTGTATGATTTTACATTAAATAGATTTCATTCGGCTCATTGTCACCTTCTTATGTATCTGTGTGTTGACCTTCTTTACATTCAGTCTTCTTTTGCGGCGTGAGTGTTGCTCATTTAGTAATGGAGAATTTGTGAAAGCCGGGTTGGCTGAATTGGAACAGTGGTGCTGCTATGCAACTGAAGAAGTAAGCATGTTCTACTATATCTTTTCAGTTCTTAGTGCTATTCAGCATCTTACTTCTGTATTTTTATGTCCAGTTTGTAGGCTCAGCATGGGACGAGTTGAAACACATTAGACAGGCAGTTGGATTCCTAGTAAGAAACTGATTTCGGGGCTATGTGCTAAATGAATTTTTTATGAGGTGCTTTTATCTGACTCTTCTTTTCTCTCAACTTCTCGCAGGTTATCCATCAAAAGCCCAAAAAGTCATTGAATGAAATCACTAATGAACTTTGTCCAGTAAGGAGTCATTTTTTATATTTCTCCTCCATTCTTCCCATATTTTCTGCATAGAATTTGCTTCTTTCTTTTACCTATGAAAAGAAAAAAAGAAAGTTTGTTTCTTTCGACTTCTCGCATGCTGTTTTAATTTATTTTACTCTTTTATTAGGTGCTTAG</genome_strand>
        <mrna_strand>TAAGAGACAATCTGAAGAAAGAGATGTCCCCATTGCTTGGGGTATGTATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAAGAACATCTCGTGCAAGTTTAGTCAAAGGAAGATCCCAAGCTAATGCTGCTGCCCAGCAAGCTCTATTTGCTCATTGGCAAAGCATTGTAAAAAGTTTGAATAACTACTTGATGATGATGAAATCAAACCAT.......................................................................................GTTCCTCCCTTCTTAGTTCGGAAGGTTTTCACTCAAATATTTTCCTTTATCAATGTTCAACTTTTCAACAG............................................................................................TCTTCTTTTGCGGCGTGAGTGTTGCTCATTTAGTAATGGAGAATTTGTGAAAGCCGGGTTGGCTGAATTGGAACAGTGGTGCTGCTATGCAACTGAAGAA.........................................................................TTTGTAGGCTCAGCATGGGACGAGTTGAAACACATTAGACAGGCAGTTGGATTCCTA........................................................................................GTTATCCATCAAAAGCCCAAAAAGTCATTGAATGAAATCACTAATGAACTTTGTCCA.......................................................................................................................................................GTGCTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320850" ref_strand="+" ref_description="SGN-E320850 [cTOB-27-L1]">
      <seq>aagatcccaagctaatgctgctgcccagcaagctctatttgctcattggcaaagcattgtaaaaagtttgaataactacttgatgatgatgaaatcaaaccatgttcctcccttcttagttcggaaggttttcactcaaatattttcctttatcaatgttcaacttttcaacagtcttcttttgcggcgtgagtgttgctcatttagtaatggagaatttgtganagccgggttggctgaattggaacagtggtgctgctatgcaactgaagaatttgtaggctcagcatgggacgagttgaaacacattagacaggcagttggattcctagttatccatcaaaagcccaaaaagtcattgaatgaaatcactaatgaacttttgtccagtgcttagcatacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="47054" stop="48383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47354" g_stop="47456" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47457" i_stop="47543" i_length="87">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47544" g_stop="47614" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="174" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47615" i_stop="47706" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47707" g_stop="47806" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="274" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47807" i_stop="47879" i_length="73">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47880" g_stop="47936" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="331" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47937" i_stop="48024" i_length="88">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48025" g_stop="48081" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="389" r_length="58" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48082" i_stop="48232" i_length="151">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48233" g_stop="48248" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="405" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E320850" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47354" e_stop="47456"/>
          <exon e_start="47544" e_stop="47614"/>
          <exon e_start="47707" e_stop="47806"/>
          <exon e_start="47880" e_stop="47936"/>
          <exon e_start="48025" e_stop="48081"/>
          <exon e_start="48233" e_stop="48248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCCCAAGCTAATGCTGCTGCCCAGCAAGCTCTATTTGCTCATTGGCAAAGCATTGTAAAAAGTTTGAATAACTACTTGATGATGATGAAATCAAACCATGTAAGTTAAAGATTGAAGTGTTAAATAATATCACCTGTTATTTTGTCTCCTTGATGTTTATATGCTTCCATTGCTCCACCTATGTAGGTTCCTCCCTTCTTAGTTCGGAAGGTTTTCACTCAAATATTTTCCTTTATCAATGTTCAACTTTTCAACAGGTAAATAGTTGTATGATTTTACATTAAATAGATTTCATTCGGCTCATTGTCACCTTCTTATGTATCTGTGTGTTGACCTTCTTTACATTCAGTCTTCTTTTGCGGCGTGAGTGTTGCTCATTTAGTAATGGAGAATTTGTGAAAGCCGGGTTGGCTGAATTGGAACAGTGGTGCTGCTATGCAACTGAAGAAGTAAGCATGTTCTACTATATCTTTTCAGTTCTTAGTGCTATTCAGCATCTTACTTCTGTATTTTTATGTCCAGTTTGTAGGCTCAGCATGGGACGAGTTGAAACACATTAGACAGGCAGTTGGATTCCTAGTAAGAAACTGATTTCGGGGCTATGTGCTAAATGAATTTTTTATGAGGTGCTTTTATCTGACTCTTCTTTTCTCTCAACTTCTCGCAGGTTATCCATCAAAAGCCCAAAAAGTCATTGAATGAAATCACTAATGAAC-TTTGTCCAGTAAGGAGTCATTTTTTATATTTCTCCTCCATTCTTCCCATATTTTCTGCATAGAATTTGCTTCTTTCTTTTACCTATGAAAAGAAAAAAAGAAAGTTTGTTTCTTTCGACTTCTCGCATGCTGTTTTAATTTATTTTACTCTTTTATTAGGTGCTTAGCATACAGC</genome_strand>
        <mrna_strand>AAGATCCCAAGCTAATGCTGCTGCCCAGCAAGCTCTATTTGCTCATTGGCAAAGCATTGTAAAAAGTTTGAATAACTACTTGATGATGATGAAATCAAACCAT.......................................................................................GTTCCTCCCTTCTTAGTTCGGAAGGTTTTCACTCAAATATTTTCCTTTATCAATGTTCAACTTTTCAACAG............................................................................................TCTTCTTTTGCGGCGTGAGTGTTGCTCATTTAGTAATGGAGAATTTGTGANAGCCGGGTTGGCTGAATTGGAACAGTGGTGCTGCTATGCAACTGAAGAA.........................................................................TTTGTAGGCTCAGCATGGGACGAGTTGAAACACATTAGACAGGCAGTTGGATTCCTA........................................................................................GTTATCCATCAAAAGCCCAAAAAGTCATTGAATGAAATCACTAATGAACTTTTGTCCA.......................................................................................................................................................GTGCTTAGCATACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359538" ref_strand="+" ref_description="SGN-E359538 [cLHT-31-P8]">
      <seq>gctcatttagtaatggagagtttgtgaaagccgggttggctgaattggaacagtggtgctgctatgcaacctgaagaatttgtaggctcagcatgggaccgagctgaaacacattagacaggcagttggattcctagttatccatcaaaagcccaaaaagtcattgaatgaaatcacctaatgaactttgtcccgtgcttagcataccagcaacctgtataggatcagcactatgtacctgggatgacaaatatggaacccacactgtctcttcagatgttatttcaagtatgagagttatgatgacagaggactccaataatgctgtcagcagttcctttttgttggatgatgattcgagcattccattctccgtggatgacatctccaaaacgatgcaacaaatagacattggtgatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="47430" stop="48983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47730" g_stop="47806" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47807" i_stop="47879" i_length="73">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47880" g_stop="47936" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="136" r_length="58" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47937" i_stop="48024" i_length="88">
            <donor d_prob="0.647" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48025" g_stop="48081" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="194" r_length="58" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48082" i_stop="48232" i_length="151">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.950" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48233" g_stop="48313" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="278" r_length="84" r_score="0.914"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48314" i_stop="48441" i_length="128">
            <donor d_prob="0.932" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48442" g_stop="48524" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="361" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48525" i_stop="48621" i_length="97">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48622" g_stop="48683" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="423" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E359538" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47730" e_stop="47806"/>
          <exon e_start="47880" e_stop="47936"/>
          <exon e_start="48025" e_stop="48081"/>
          <exon e_start="48233" e_stop="48313"/>
          <exon e_start="48442" e_stop="48524"/>
          <exon e_start="48622" e_stop="48683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTTAGTAATGGAGAATTTGTGAAAGCCGGGTTGGCTGAATTGGAACAGTGGTGCTGCTATGCAAC-TGAAGAAGTAAGCATGTTCTACTATATCTTTTCAGTTCTTAGTGCTATTCAGCATCTTACTTCTGTATTTTTATGTCCAGTTTGTAGGCTCAGCATGGGA-CGAGTTGAAACACATTAGACAGGCAGTTGGATTCCTAGTAAGAAACTGATTTCGGGGCTATGTGCTAAATGAATTTTTTATGAGGTGCTTTTATCTGACTCTTCTTTTCTCTCAACTTCTCGCAGGTTATCCATCAAAAGCCCAAAAAGTCATTGAATGAAATCA-CTAATGAACTTTGTCCAGTAAGGAGTCATTTTTTATATTTCTCCTCCATTCTTCCCATATTTTCTGCATAGAATTTGCTTCTTTCTTTTACCTATGAAAAGAAAAAAAGAAAGTTTGTTTCTTTCGACTTCTCGCATGCTGTTTTAATTTATTTTACTCTTTTATTAGGTGCTTAGCATA-CAGCAA-CTGTATAGGATCAGCACTATGTA-CTGGGATGACAAATACGGAACCCACACTGTCTCTTCAGATGTAAGTTCTTGCACGGTTGCACCTACAGTTTGGATACCTATGTAGGTTTACAGTAATTTGGGGGCTTGTTATTATACTATTTGCTTGGTTTTTGATTATGGGTTTTATGCTTTACCTTCAACTGATAGGTTATTTCAAGTATGAGAGTTATGATGACAGAGGACTCCAACAATGCTGTCAGCAGTTCCTTTTTGTTGGATGATGATTCGAGGTATCATTTATTAAATATCTCATCCTCAATCTTTGGTATATATGTACATTTTACTGAGCACCTCAAATTCAATATCTTGTTTTAAATTATGACACAGCATTCCATTCTCCGTGGATGACATCTCCAAAACGATGCAACAAATAGACATTGGTGATGTTG</genome_strand>
        <mrna_strand>GCTCATTTAGTAATGGAGAGTTTGTGAAAGCCGGGTTGGCTGAATTGGAACAGTGGTGCTGCTATGCAACCTGAAGAA.........................................................................TTTGTAGGCTCAGCATGGGACCGAGCTGAAACACATTAGACAGGCAGTTGGATTCCTA........................................................................................GTTATCCATCAAAAGCCCAAAAAGTCATTGAATGAAATCACCTAATGAACTTTGTCCC.......................................................................................................................................................GTGCTTAGCATACCAGCAACCTGTATAGGATCAGCACTATGTACCTGGGATGACAAATATGGAACCCACACTGTCTCTTCAGAT................................................................................................................................GTTATTTCAAGTATGAGAGTTATGATGACAGAGGACTCCAATAATGCTGTCAGCAGTTCCTTTTTGTTGGATGATGATTCGAG.................................................................................................CATTCCATTCTCCGTGGATGACATCTCCAAAACGATGCAACAAATAGACATTGGTGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325307" ref_strand="+" ref_description="SGN-E325307 [cTOC-1-L9]">
      <seq>gctcagcatgggacgagttgaaacacattagacaggcagttggattcctagttatccatcaaaagcccaaaaagtcattgaatgaaatcactaatgaactttgtccagtgcttagcatacagcaactgtataggatcagcactatgtactgggatgacaaatacggaacccacactgtctcttcagatgttatttcaagtatgagagttatgatgacagaggactccaacaatgctgtcagcagttcctttttgttggatgatgattcgagcattccattctccgtggatgacatctccaaaacgatgcaacaaatagacattggtgatgttgaacctcctccattaatccgtgagaattcaggatttgtattcttgcatcaacggtctagttgatggtggttctaaatatacaattcaacatgtttgcatagctccagagagctgacgctcgtgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="47587" stop="49109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47887" g_stop="47936" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47937" i_stop="48024" i_length="88">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48025" g_stop="48081" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="107" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48082" i_stop="48232" i_length="151">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48233" g_stop="48313" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="188" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48314" i_stop="48441" i_length="128">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48442" g_stop="48524" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="271" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48525" i_stop="48621" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48622" g_stop="48809" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="459" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E325307" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47887" e_stop="47936"/>
          <exon e_start="48025" e_stop="48081"/>
          <exon e_start="48233" e_stop="48313"/>
          <exon e_start="48442" e_stop="48524"/>
          <exon e_start="48622" e_stop="48809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAGCATGGGACGAGTTGAAACACATTAGACAGGCAGTTGGATTCCTAGTAAGAAACTGATTTCGGGGCTATGTGCTAAATGAATTTTTTATGAGGTGCTTTTATCTGACTCTTCTTTTCTCTCAACTTCTCGCAGGTTATCCATCAAAAGCCCAAAAAGTCATTGAATGAAATCACTAATGAACTTTGTCCAGTAAGGAGTCATTTTTTATATTTCTCCTCCATTCTTCCCATATTTTCTGCATAGAATTTGCTTCTTTCTTTTACCTATGAAAAGAAAAAAAGAAAGTTTGTTTCTTTCGACTTCTCGCATGCTGTTTTAATTTATTTTACTCTTTTATTAGGTGCTTAGCATACAGCAACTGTATAGGATCAGCACTATGTACTGGGATGACAAATACGGAACCCACACTGTCTCTTCAGATGTAAGTTCTTGCACGGTTGCACCTACAGTTTGGATACCTATGTAGGTTTACAGTAATTTGGGGGCTTGTTATTATACTATTTGCTTGGTTTTTGATTATGGGTTTTATGCTTTACCTTCAACTGATAGGTTATTTCAAGTATGAGAGTTATGATGACAGAGGACTCCAACAATGCTGTCAGCAGTTCCTTTTTGTTGGATGATGATTCGAGGTATCATTTATTAAATATCTCATCCTCAATCTTTGGTATATATGTACATTTTACTGAGCACCTCAAATTCAATATCTTGTTTTAAATTATGACACAGCATTCCATTCTCCGTGGATGACATCTCCAAAACGATGCAACAAATAGACATTGGTGATGTTGAACCTCCTCCATTAATCCGTGAGAATTCAGGATTTGTATTCTTGCATCAACGGTCTAGTTGATGGTGGTTCTAAATATACAATTCAACATGTTTGCATAGCTCCAGAGAGCTGACGCTCGTGCACA</genome_strand>
        <mrna_strand>GCTCAGCATGGGACGAGTTGAAACACATTAGACAGGCAGTTGGATTCCTA........................................................................................GTTATCCATCAAAAGCCCAAAAAGTCATTGAATGAAATCACTAATGAACTTTGTCCA.......................................................................................................................................................GTGCTTAGCATACAGCAACTGTATAGGATCAGCACTATGTACTGGGATGACAAATACGGAACCCACACTGTCTCTTCAGAT................................................................................................................................GTTATTTCAAGTATGAGAGTTATGATGACAGAGGACTCCAACAATGCTGTCAGCAGTTCCTTTTTGTTGGATGATGATTCGAG.................................................................................................CATTCCATTCTCCGTGGATGACATCTCCAAAACGATGCAACAAATAGACATTGGTGATGTTGAACCTCCTCCATTAATCCGTGAGAATTCAGGATTTGTATTCTTGCATCAACGGTCTAGTTGATGGTGGTTCTAAATATACAATTCAACATGTTTGCATAGCTCCAGAGAGCTGACGCTCGTGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325310" ref_strand="+" ref_description="SGN-E325310 [cTOC-1-N1]">
      <seq>agttgaaacacattagacaggcaggtggattcctaggtatccatcaaaagcccaaaaagtcattgaatgaaatcactaatgaactttgtccagtgcttagcatacagcaactgtataggatcagcactatgtactgggatgacaaatacggaacccacactgtctcttcagatgttatttcaagtatgagagttatgatgacagaggactccaacaatgctgtcagcaattcctttttgttggatgatgattcgagcattccattctccgtggatgacatcttcaaaacgatgcaacaaatagacattggtgatgttgaacctcctccattaatccgtgagaatgcaggatttgtattcttgcatcaacggtctaattgatggtggggctaaatataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="47602" stop="49064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47902" g_stop="47936" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47937" i_stop="48024" i_length="88">
            <donor d_prob="0.647" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48025" g_stop="48081" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="92" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48082" i_stop="48232" i_length="151">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48233" g_stop="48313" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="173" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48314" i_stop="48441" i_length="128">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48442" g_stop="48524" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="256" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48525" i_stop="48621" i_length="97">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.928" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48622" g_stop="48764" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="399" r_length="143" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E325310" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47902" e_stop="47936"/>
          <exon e_start="48025" e_stop="48081"/>
          <exon e_start="48233" e_stop="48313"/>
          <exon e_start="48442" e_stop="48524"/>
          <exon e_start="48622" e_stop="48764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAAACACATTAGACAGGCAGTTGGATTCCTAGTAAGAAACTGATTTCGGGGCTATGTGCTAAATGAATTTTTTATGAGGTGCTTTTATCTGACTCTTCTTTTCTCTCAACTTCTCGCAGGTTATCCATCAAAAGCCCAAAAAGTCATTGAATGAAATCACTAATGAACTTTGTCCAGTAAGGAGTCATTTTTTATATTTCTCCTCCATTCTTCCCATATTTTCTGCATAGAATTTGCTTCTTTCTTTTACCTATGAAAAGAAAAAAAGAAAGTTTGTTTCTTTCGACTTCTCGCATGCTGTTTTAATTTATTTTACTCTTTTATTAGGTGCTTAGCATACAGCAACTGTATAGGATCAGCACTATGTACTGGGATGACAAATACGGAACCCACACTGTCTCTTCAGATGTAAGTTCTTGCACGGTTGCACCTACAGTTTGGATACCTATGTAGGTTTACAGTAATTTGGGGGCTTGTTATTATACTATTTGCTTGGTTTTTGATTATGGGTTTTATGCTTTACCTTCAACTGATAGGTTATTTCAAGTATGAGAGTTATGATGACAGAGGACTCCAACAATGCTGTCAGCAGTTCCTTTTTGTTGGATGATGATTCGAGGTATCATTTATTAAATATCTCATCCTCAATCTTTGGTATATATGTACATTTTACTGAGCACCTCAAATTCAATATCTTGTTTTAAATTATGACACAGCATTCCATTCTCCGTGGATGACATCTCCAAAACGATGCAACAAATAGACATTGGTGATGTTGAACCTCCTCCATTAATCCGTGAGAATTCAGGATTTGTATTCTTGCATCAACGGTCTAGTTGATGGTGGTTCTAAATATACA</genome_strand>
        <mrna_strand>AGTTGAAACACATTAGACAGGCAGGTGGATTCCTA........................................................................................GGTATCCATCAAAAGCCCAAAAAGTCATTGAATGAAATCACTAATGAACTTTGTCCA.......................................................................................................................................................GTGCTTAGCATACAGCAACTGTATAGGATCAGCACTATGTACTGGGATGACAAATACGGAACCCACACTGTCTCTTCAGAT................................................................................................................................GTTATTTCAAGTATGAGAGTTATGATGACAGAGGACTCCAACAATGCTGTCAGCAATTCCTTTTTGTTGGATGATGATTCGAG.................................................................................................CATTCCATTCTCCGTGGATGACATCTTCAAAACGATGCAACAAATAGACATTGGTGATGTTGAACCTCCTCCATTAATCCGTGAGAATGCAGGATTTGTATTCTTGCATCAACGGTCTAATTGATGGTGGGGCTAAATATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366213" ref_strand="+" ref_description="SGN-E366213 [cLPT-1-M15](-)">
      <seq>tgtttgttgtccggttcaattaattcttttttcctctccggctcaacttgggaggtatttttattatgccaaaaggcttttagtgtggtcatatgcaggtaggtataggcagatgcattggtttttgttgcttgcctttattattttgtctttgtcagagttgtaaagtcactaaagttgtcaattttaggtccttattcgctgtagtgtgtaggtgaagtgcagtttatgtataatagaagtgttaaattattaaggaaaaaagggttgtgagtcttttcttcccattagtgacggatcaaactgcataaaaaatcagtggtatggacctaactttgtatcagctacattgaagtatgaggaggcggacaaataagagcatagctagaagtgcgaaaggagttaatttcccaattatacatggtttactcataatacgcagtaaagatgattttgagaatcaaattatgatattagtagtcagtcgatcatgattttgacttgaaaaaaaattgttttgatttttctttgggaactaaattttatcatagcccaaaattctttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="48601" stop="125184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48901" g_stop="49389" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49390" i_stop="49479" i_length="90">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49480" g_stop="49485" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="495" r_length="6" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49486" i_stop="49816" i_length="331">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49817" g_stop="49831" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="510" r_length="15" r_score="0.800"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49832" i_stop="52281" i_length="2450">
            <donor d_prob="0.390" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52282" g_stop="52370" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="599" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E366213" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48901" e_stop="49389"/>
          <exon e_start="49480" e_stop="49485"/>
          <exon e_start="49817" e_stop="49831"/>
          <exon e_start="52282" e_stop="52370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGTTGTCCGGTTCAATTTATTCTTTTTTCCTCTCCTGCTCAACTTGGGAGGTATTTTTATTTATGCCAAAAGGCTTTTAGTGTGGTCATATGCAGGTAGGTATAGGCAGATGCATTGGTTTTTGTTGCTTGCCTTTATTATTTTGTCTTTGTCAGAGTTGTAAAGTCTCTAAAGTTGTCAATTTTAGGTCCTTATTTGCTGTAGTGTGTAGGTGAAGTGCAG-TTATGTGTAATAGAAGTGTTAAATTATTAAGGAAAAAAGGGTTGTGAGTCTTTTCTTCCCATTAGTGACTGATCAAACTGCATAAAGAATCAGTGGTATGGACCTAACTTTGTATCACCTCCATTGAAGTATGAGGAGGCGGACAAATAAGAGCATAGCTAGAAGTGCGAAAGGAGTTAATTTCACAATTATACATGGTTTACTCATAATACGCAGTATAGATGATTTTGAGAATCAAATTATGATAGTAGTAGTCAGTCGATTTTTCCTTTGGAACTAAATTTTATCATAGCACAATGTTCTTTTCTTAGCTATTGCATGAAATATTCTTTTGTTATGTTAAAATTTTGAAGCAGGTTACATATTACTTCGAGAATGGATTCCTCCAAAGCACCCACTGCTTGGCTTGGCTGGATTAGAGGCCTAGGACTGCTCTAGCGATGGGCGTTTTGGAGGAATCCATTCTCAAAGTAATATGTATTGCTACAGACCGCTAAAGGGTCTGCTGCTTGAGTGGTCCGCAGACTGAAAACATGGTCACACTATCACTTGGCCCCAGCCAAAAACGGCCAAGTCAAATGGACTCCAAGGACCAGATTTTTTCAGAACCCTGTGCATGTAAATGAACTATACTACTTCGCCAAATTTGATATTTCAATCTTAATAGAGATGTCAAAACTTTCAATAGAGGTCGTCTTGAAAAAAGTGGGTTCCACATTCTAGACTTCATTTAAGCCACAAGGTTGTTCTAAATGAGTATAGAAGCCTTGGTACACGAACCGAAGGAGCTAGACCAACTTGACGTTTTGGAGCTAACAAAACCATTAGAATTGTATTATGAAGTTTGTTTATCTCAAGTTTTAACCGAAGTCAAATCTAAATTTCAAAAGCTCCTAAACAGAAGAACTCGAATAAAAATCAAATGAACAGCTCAATAACTGAACTATCAATGTTAGTAAGTTACAAATTTTGTGGGTCCGCTACAGAAAATCTCTAACTCTGAAAACGCTGAATAATGAAAAAAAGAATGTCTTGGAGGGTCATTACAATGTCTTATGTGCATTTGCCATTACAATTGTTGTTGAATATATCATCCTTCAATTCACTTTAATTTGTTCACTTTGATTATGTATGTCCCTTGAGAAATAATAATTAATATGACTATTTTAGCATAATATATTGATTGATGAATAGTTTTAGGTGTTTGAAAATAACTTGGAGAATAAATAATTAATGTTGAAGAAAAAATAGGAAAACAATAATTGTTTGTTTTTTTGATATGTTAAAAGCGATAAGTAAAATAAAAAATCTTTTTTTAAACTGGTGGACAAGTAAAAAGTGAATGTAGAGAGTAATATATAAATATATAATTCTTGCTTTTGTATATTTTATTTGCTGCTAATTTTTATATATTCTTACATGCGTTTTGATTGGACTTAACTGTAACAAAAAAATAAATGCTAAAATTGCAAAATAGATAATTTCCTAGACAAATTCAGCAGTAACTATTGATAAAATTATAATGGAAAAAATGTTTATCTATTTTACACTATATCAAGAAATATATTTAGTGGCGATTATTTGACGACCATAAGATAATTGTCACTATGTCATTCTTTAAAATGAAATGGTAGCGCAAATGCACATTATCTGCAAAATATTGTTTTCTCTGCGTGGAAATATAAAACAATGACCGTAATATAAAACAATGACTGACAAATCAATAATTGAAAGTGTTATAAAAATAATTAACCATAAGATAATTGTCACTATGTCATTCTTTGAAATGAAATGGTAGCGCAAATGCACATTATATGCAAAATATTGTTTTCTCTGCGTGGAAATATAAAACAATGACCGTAATATAAAACAATGACCGACAAATCAATAATTGAAAGTGTTATAAAAATAACTAACCAATAAATTAATATTCATAAATTAAATTAAATATTAAAATAACAAAGAGAGAGCATAATAATATATTTCACACTTTTCTTTTATATATATATATATATATCTTTGTGAATGAAAACAATGGTTATTTACGGCTAATAAGAAAATTAAAACTAATACTTGACCATTGATAAGCTATACATTTGGCCAAGTGATGACACCTCAAACATGGGTGGCCCCACATGAGATCATTTTAGTGTAGCAAGTGATGACAGTTAAAAAAATGATCCACATGACATCCATTTAGTTTTACAATAAAAAAATAATTTTTAATTTTACTTATTCTCTCAAATGTTTTTCCTAGGTCACGAACAATTACTTGTTCTCTCAAGAAAATTTCTTTGGGTCAAGAGAATTCAAGAATTGGTAGATGTTGTGCTTCTTATTGTGAAATACAAAAAAGTTTGATGAATTCATTGAATTTATTTTTACTTAATTTTTCAAATATCTATTGTTCATATAGAAAGAAAAACAAATACAAATTTGAAAACCTTACTGTCACCTCAAAGTACAAATTATTTATTGATATAGAAATGAACGAACCTAAAAGAGGAATATAGATGATTCATATAGTAAACACAACCAAGAGACATAGTCTATAGTAGTTTATTGTGTACATGGCCAAAAAAAAAAATACAAACCCCAAACAATACCCATTTTGGGAGATTTTTGCTCCGCTTAGATGAATAATCTTTTATCGCTATTCCCCCACGATTTTCAAGTCCCTTTTCACTTTGATTTGAATTTTCTTATTGTCCTTTCGACTTCCAATTATCTTGTGCAATCCATTTCGATTTTATGCAGTCATTTCTAGATATTTAATTATAAGGTTTGATCATAAGATATTGAGTCTATGTGAACTCGTGAGTGAGTCTATAGATTGCCTTTGCTTTGCCAGTTATCTTTCATTATTATAATACTTATCTATGTTATAAATCCATTGAATTGTGTGGATTGTCCATTTGCTTTCTTCATGAACTTATCCTATCATGTATCTACATTTCCAAGGTGACATGAACCTTTATAGATAACTATGTACTTATTAATTGAGCATTTATCATAGTGGCCTTTGGGTGATATTTCTATTCTATAAATAGAGATATCATTCACCTTTTGTAAAATACACTTGAATAAGAAGAAAGTCTTATCTTCCATTTTACTTCTCTTGTCTTCATCTCTTTATATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA</genome_strand>
        <mrna_strand>TGTTTGTTGTCCGGTTCAATTAATTCTTTTTTCCTCTCCGGCTCAACTTGGGAGGTATTTTTA-TTATGCCAAAAGGCTTTTAGTGTGGTCATATGCAGGTAGGTATAGGCAGATGCATTGGTTTTTGTTGCTTGCCTTTATTATTTTGTCTTTGTCAGAGTTGTAAAGTCACTAAAGTTGTCAATTTTAGGTCCTTATTCGCTGTAGTGTGTAGGTGAAGTGCAGTTTATGTATAATAGAAGTGTTAAATTATTAAGGAAAAAAGGGTTGTGAGTCTTTTCTTCCCATTAGTGACGGATCAAACTGCATAAAAAATCAGTGGTATGGACCTAACTTTGTATCAGCTACATTGAAGTATGAGGAGGCGGACAAATAAGAGCATAGCTAGAAGTGCGAAAGGAGTTAATTTCCCAATTATACATGGTTTACTCATAATACGCAGTAAAGATGATTTTGAGAATCAAATTATGATATTAGTAGTCAGTCGAT..........................................................................................CATGAT...........................................................................................................................................................................................................................................................................................................................................TTTGACTTGAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTTTTGATTTTTCTTTGGGAACTAAATTTTATCATAGCCCAAAATTCTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543213" ref_strand="+" ref_description="SGN-E543213 [TUS-64-O16](-)">
      <seq>aatttggtatagatgattttgcattattaacaggacttaaggtcagaggaaataccaatgatttcaaatacccagaacaaactaattgtatgctttttaaaaagtatttccctggtgcagtcaatagtgttacaaagcatcaactagttcaaaggtttaagatgggtaattgggagagcaatcaggatgcactccaaatgtctatactgttctttattcatacatttgtattagcttctattgataacacagcgatatctattgtcgactttctaatggttgaagatggtagatatcaacattttccttggggtcagctatcattttccaaactaattggttcacttagacaggattttgacgttagtaaaaagttgtaccgattatatgggatgccatatgcactaaatgtttggatatacgaatgtgcatccaatttaaattcagaaatagttgtgagagaacgcaatgtcatcccaagaatatgcaattggagagttgtgtctgaaaaggcaaagtttgaaatgcttatgtccaccattttccaaaagttagaatgcatgttcaaacattgtcccaacagcagaggaaattgaagcttttgatattgctcaagttgaacatgctcattctacatcaataccattagtacaaccaaacgagcaagatgatttagatgatttctccacaagaccgccagaacagttattgaggacatattctagagtgtctgatacatctcctccaccaccgccaaaaaagaaaaaaaaaaactcgagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="72802" stop="74282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73102" g_stop="73652" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73653" i_stop="73760" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73761" g_stop="73979" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="770" r_length="219" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E543213" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73102" e_stop="73652"/>
          <exon e_start="73761" e_stop="73979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTACTATTGATAACACAGCGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTACATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCAATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGCTGTGAGAGAACGCAATGTCATCCCAAGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTCCAAAAGGTAAAATTTTATTTTTGTATATGGAATATCGTTATTTATGTCTTTGTGATACATTATGAATTATTACTGTATCTAACAATTAAATTATCTTATGTGTTTGTGATACATTTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCTCAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTAGATGATTTCTCCACAAGACCGCCAGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAAAGAAGAAAAAA</genome_strand>
        <mrna_strand>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTTCTATTGATAACACAGCGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGTTGTGAGAGAACGCAATGTCATCCCAAGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTCCAAAAG............................................................................................................TTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCTCAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTAGATGATTTCTCCACAAGACCGCCAGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAAAAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245630" ref_strand="+" ref_description="SGN-E245630 [cLEF-43-P3]">
      <seq>tcgtgccgattttgataaaagcaaatcactcccagctgatgcaatctattagcaaagagaacatcaattttcaggctgatacaagcacatttcagtctgacaaacaaacatctcagcaaataccggttgatctcgatgatatgggtggtgtagctgaggatggtggtggtttttctggtaaaaatggtgagcatcatatcgtcgacgatgcaggggatgtcgatgtggatggtgttggtgttgccgtaaatgagggtgaaccaatagtcactgatccaaaggatggtgacgcacatcagtcgcaccaagatttaaatgaacatatcatggaccaagccgttgacgacaatgttcatcacaacatccctcatatgttgcccgaaaaaacaacaacagattcatcggattcttcaacttcaacaacaatatcgccatcaactcaagcagcaatagaagcacttatcaaagatttgggtaaagatgctaccaatgctagaccattatattcttacgatccaaagaatataactagcagccagtacttgttgaccgacagtcaattacccactgaaattccaataacggagattgctgttaaaactgatgcagtcactcctgcgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="74072" stop="75571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74364" g_stop="74644" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74645" i_stop="74846" i_length="202">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74847" g_stop="74969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="404" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74970" i_stop="75052" i_length="83">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75053" g_stop="75271" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="623" r_length="219" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E245630" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74364" e_stop="74644"/>
          <exon e_start="74847" e_stop="74969"/>
          <exon e_start="75053" e_stop="75271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGATGAGCATCATATCGTCGATGATGCAGGGGATGTCAATGTAGATGGTGTTGGTGTTGCCATAAATGAGGGTGAACCAATAGTCAGTGATCCAAAGGTAATGTTTATGATACATTGGGTATGTTGTGTATCATGCACATATAGTCAATGCTTTGTATCATGATCATTTTTTTTCTCATTTTATATTCTGTCATGTATCATACATATTTAATCAATACTATGTATCATGTGATTGTTATCAATGTTACGTATCAGCACAAATTATATTAACAGTTTTTATTTCAAAATTGCATATTCAGGATGGTGACGCACATCAGTCGCACCAAGACTTAAATGAACATATCATGGACCAAGCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAACGGATTCATCGGTACATTTTTCAATTTTGATTTATGACACACAATTTCATTACACACAAATTTATTCTAAAAATCATTACGTCATATTATACAGGATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGATGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGATCGACAATCAATTACCCACTGAAATTCCAATAACGGAGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</genome_strand>
        <mrna_strand>TCGTGCCGATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAG..........................................................................................................................................................................................................GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGCCGTTGACGACAATGTTCATCACAACATCCCTCATATGTTGCCCGAAAAAACAACAACAGATTCATCG...................................................................................GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCACTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGAGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547123" ref_strand="+" ref_description="SGN-E547123 [TUS-70-N12](-)">
      <seq>cttgagcggaaagtatgttcttgtggtagatttcaactagatgagataccttgttcacatgcaatcgctgtattgaaaaaaaagaatgtcaccgatatgaatccgtattgctctgattattacaagcctgatgcattggcaaaaacatatgaaatttcaatggtaccaatgccagataaggaagattggtcagatcctaataatgtggtagctgaaactgtgtatccacctagatacagaagatcatctggacgaccaagaaaaagaagaagaaagaatgcagatgaaaagatttcggtgaacacaaactgttgtggacaatgtggacaagaaggaaacaacggaagaacttgtactttctacccaaaagagaagtgaattagtcgtaatgtttttatgatatcaagaataatttataacgtaaatattttaatgaatttcagttttcattacagttgaaaattgaacactttttgtttagataaataaacttaataacatgtgataattaaattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="78570" stop="77452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78270" g_stop="77752" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E547123" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78270" e_stop="77752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGCGGAAAGTATGTTGTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATAGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGATGCCAATGCCAGATAAGAAAGATTGGTCAGATCTTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGATCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTTGTCGTAATGTTTCTATGATATAAAGAATAATTTATCACGTAAACATTTAAATGAATTTCAGTTTTAATTACGACTGCAAATTGAAAACTTTGTGTTTAGATAAATAAACGTACAAACATGTTGTAATTACATTTGAA</genome_strand>
        <mrna_strand>CTTGAGCGGAAAGTATGTTCTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATCGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCATTGGCAAAAACATATGAAATTTCAATGGTACCAATGCCAGATAAGGAAGATTGGTCAGATCCTAATAATGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGAAACAACGGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTTTATGATATCAAGAATAATTTATAACGTAAATATTTTAATGAATTTCAGTTTTCATTACAGTTGAAAATTGAACACTTTTTGTTTAGATAAATAAACTTAATAACATGTGATAATTA-AATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342749" ref_strand="+" ref_description="SGN-E342749 [cTOF-7-A20]">
      <seq>aaacttggtcttgactcttctaataaatgtgaatttgttaaatatcttgaacagggtacagatgatattacaaacgataatggtataccggaactattgaactggtggagaaatcgtggagctcaatatccaaaacttagtaggatggtgaaggatgtgcttgcaattcaaggatcatcagtagcttcggaggcagctttcagcgcggcaagatttcaaattggagaccacagatattcgttagcagaagacagcctggagatatcagtgttatttagagattggataaatgctgagcgtagaaatcaaggacttccaaagttagatagtcaatttgaacttttcatagattcaactattggatgtggtagtgacgatggcatcgaaattcaagatcgtcaacgagctttaccaagaccagaagttgatcacaatcaatccctagctgagttagaaagaggatttacgggactatacaactattagtattacattcgagacatagttgaaacagaacccttcctagaaggtggctgcgtaagctatgtactctactaatagttgtaaattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="88592" stop="87418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88292" g_stop="87718" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E342749" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88292" e_stop="87718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTTAAATATCTTGAACAGGGTACAGATGATATTACAAACGATAATGGTATACCGGAACTATTGAACTGGTGGAGAAATCGTGGAGCTCAATATCCAAAACTTAGTAGGATGGTGAAGGATGTGCTTGCAATTCAAGCATCATCAGTAGCTTCGGAGGCAGCTTTCAGCGCGGCAAGATTTCAAATTGGAGACCACAAATTTTCGTTAGCAGAAGACAGCCTGGAGATATCAATGTTATTTAGAGACTGGATAAATGTTGAGCGTAGAAATCAAGGACTTCCAAAGTTAGATAGTCAATTTGAACTTTTCATAGATTCAGCTATTGGATGTGGTAGTGATGATGGCATCGAAATTCAAGATCGTCAACGTGATTTACCAAGACCAGAAGTTGATCACAATCAATCCCTAGCTGAGTTAGAAAGAGGATTTACGGGACTATACAACTATTAGTATTACATTCAAGACATAGTTGAAACAGAACCCTTCCTAGAAGGTGGCTCCGTAAGCTATGTACTCTACTAATAGTTGTAAATTGAAAT</genome_strand>
        <mrna_strand>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTTAAATATCTTGAACAGGGTACAGATGATATTACAAACGATAATGGTATACCGGAACTATTGAACTGGTGGAGAAATCGTGGAGCTCAATATCCAAAACTTAGTAGGATGGTGAAGGATGTGCTTGCAATTCAAGGATCATCAGTAGCTTCGGAGGCAGCTTTCAGCGCGGCAAGATTTCAAATTGGAGACCACAGATATTCGTTAGCAGAAGACAGCCTGGAGATATCAGTGTTATTTAGAGATTGGATAAATGCTGAGCGTAGAAATCAAGGACTTCCAAAGTTAGATAGTCAATTTGAACTTTTCATAGATTCAACTATTGGATGTGGTAGTGACGATGGCATCGAAATTCAAGATCGTCAACGAGCTTTACCAAGACCAGAAGTTGATCACAATCAATCCCTAGCTGAGTTAGAAAGAGGATTTACGGGACTATACAACTATTAGTATTACATTCGAGACATAGTTGAAACAGAACCCTTCCTAGAAGGTGGCTGCGTAAGCTATGTACTCTACTAATAGTTGTAAATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279240" ref_strand="+" ref_description="SGN-E279240 [cLEL-4-M21](-)">
      <seq>attaataccataatatctttcatagagttcatggggagtcggactatctgaattaatatttataggaccgggacgggaaaaactagtttcattcacatgcgtaaattcatctgtatttattctaacaagaggaattttagatttagacgaactagcacctttgttagtttttttaactaatttttttactgattctactagaccttttttacttccactttttttagaagactccatgatataaaattataaattataaaatacgaaacttaacaagaacaacttacaagttaaataataaatacaaaaaataaatataagattagagagtggaacgaagttaccaaacgtttgtataagaacaaacgattataatgaaaattaaaatattgatgtcgaaacttgaaatttgaagaagattcctcctgggaaatacaccaaatgaccaaatgatataagttatacacttatacttataaatatgaatgtaatttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="89749" stop="90841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90049" g_stop="90530" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E279240" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90049" e_stop="90530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATACCATAATGTCTTTCATAGAGTTCATAGGGAGTCGGACTATCTGAATTAATATTTATAGGACCGGGACGGGAAAAACTAGTTTCATTCACATGCGTAAATTCATCTGTATTTATTCTAACAAGAGGAATTTTAGATTTAGACGAACTAGCACCTTTGTTAGTTTTTTTAACTAATTTTTTTACTGATTCTACTAGACCTTTTTTACTTCCACTTTTTTTAGAAGACTCCATGATATAAAATTATAAATTATAAAATACGAAACTTAACAAGAACAATAATATAACAAGAACAACTTACAAGTTAAATAATAAATACAAAAAATAAATATAAGATTAGAGAGTGGAACGAAGTTACCAAACGTTTGTATAAGAGTAAACGATTATAATGAAAATTAAAATATTGATGTCGAAACTTGAAATTTGAAGAAGATTCCTCCTCCGAAATACACCAAATGACCAAATGATATAAGTTATAA</genome_strand>
        <mrna_strand>ATTAATACCATAATATCTTTCATAGAGTTCATGGGGAGTCGGACTATCTGAATTAATATTTATAGGACCGGGACGGGAAAAACTAGTTTCATTCACATGCGTAAATTCATCTGTATTTATTCTAACAAGAGGAATTTTAGATTTAGACGAACTAGCACCTTTGTTAGTTTTTTTAACTAATTTTTTTACTGATTCTACTAGACCTTTTTTACTTCCACTTTTTTTAGAAGACTCCATGATATAAAATTATAAATTATAAAATACG----------A-AAC-----T-TAACAAGAACAACTTACAAGTTAAATAATAAATACAAAAAATAAATATAAGATTAGAGAGTGGAACGAAGTTACCAAACGTTTGTATAAGAACAAACGATTATAATGAAAATTAAAATATTGATGTCGAAACTTGAAATTTGAAGAAGATTCCTCCTGGGAAATACACCAAATGACCAAATGATATAAGTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="96927" stop="95848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96627" g_stop="96148" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96627" e_stop="96148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAACGATATAGTACTTGCTGTTGCTACAGGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCTTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCGTCTTCGACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="96000" stop="96938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96300" g_stop="96614" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96300" e_stop="96614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACCTGTAGCAACAGCAAGTACTATATCGTTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTAC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATAT--CAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="96928" stop="96093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96628" g_stop="96391" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96628" e_stop="96391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAACGATATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="104593" stop="96173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104293" g_stop="103732" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103731" i_stop="96632" i_length="7100">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96631" g_stop="96473" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="717" r_length="158" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104293" e_stop="103732"/>
          <exon e_start="96631" e_stop="96473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATTAAGCATGATGAAGCTATTGAATCCCAAATCTTGATAAAAACCTAATCTC-TTTTAATGACGATGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGATACTTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCAACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAGCTGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAACGATATAGTACTTGCTGTTGCTACAGGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTATTCCTGTTTATTTGTGGAGTGCAGCAAACGTGTCATCGTCTTCGACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATATTCTTTTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGAATTTTTAGCTTTTAGAATACTCTTAGTTTAGTAATTTGATCATAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGAAACAATAGTTATTGAATTTGTTTTTATTAATGAGTTTAAGTCTTTCGTATTACTTTATGTTGATGTTACATTGAAATGTTAAGGTTCAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACTCGGTTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGTTTAGAACTAGAGCAACGACTGCGCCAACACCAACACCAGTACCAGCGGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTAGCTCGAGGAAGAGCAGCGGCAAGAGGCCGTGGTAGAAGTCGTGGGAGGACGTCCTCTAGGGGAAGGGGAGAAGCACCTAGACCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTCGCTTATCTTAATGGGTTGTCCGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGACTCATTGGACATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAGATGATCAACATGAACTTTTCAGTAAGTTCTTGCAATTGAAACCCCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGCGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGATTTATCAATTTCAAGGGAACGCCAAAATATGGTGGCGGTCGCATGCTGAGTGTCAACCAACAGACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGACTAAGTTTCGTGCATTATCTCGGTATGCCACCAAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCTTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTCGTAATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCACTATGGATACTACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGCCGAGGTGATGGGCAAACTGGAGCCGCTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGTGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGAATGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTTTAAATTTACATTGTGAATTACTTGATATACCTATTCATGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCTACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTACGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATTCGTTAGTGTGGGAGGGTGACTACACTTTCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGCAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTTGATTGAGTCGGTTTCGGTAGTCCGTGAGTTTCGGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCATATAGGGATATTGATTTTTGTATTGACCTTGAGCCGGGTACTCGCCCCATTTCTATACCCCCTTGTAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCAAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTAATGAGCTTGATGAACGGGATTTTTAAGCCATATTTTGACCTCTTCGTGATCGTATTTATTGATGATATACTGATATACTCAAAGAGCAAGAAAGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTTTTAAGGATGGAGTGATGGTGGATCCTTCTAAGATTGAGATAGTAAAGAATTGGGTAAGACCTACTAATGTGTCAGAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCACCGATTTTTCAAGGGATTCTCTTCTATTGCTTCCCAACTGACGAACTTGACTAAGAAAAATGTTCCATTTGTATGGTCGGATGAGTGTGAGGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACCGCACCCATTCTCACCTTGCCAGTGGAAGGTAAGAATTTCATTGTCTATTGTGATGCATCTTTTTCGGGTTTGGGTACAGTGCTAATGCAAGAGAAGAATGTGATTGCTTATGCTTCAAGACAATTAAAAGTGCATGAACGTAACTATCCAACTCATGATTTGGAATTGGTCGCGGTAGTGTTTGCATTAAAGCAATGGAGACACTATTTATATGGGGTTAAGTGTGAGGTCTATACGGATCATCGTAGCCTACAATATGTCTTTACTCAGAAAGTTTTGAACTTGAGACAGAGGAGATGGATGGAACTACTGAAGGACTACGACATCACTATTTTGTATCATCTGGGGAAGGCGAATGTTGTAGCGGATGCTTTAAGTAGAAAGGCGGGAAGCATGGGAAGTCTAGCTCACTTGCAAGCTTCTAGACGCCCATTGGCTAGAGAGGTCCAGACTCTAGCTAATGACTTGATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTTCTGTGGAGACAAGATCTTCCTTTCTTGACAAGATTAAGGGAAGACAGTCTGATGATGAGAAACTGCGTAGAATCCAAGATAAGGTATTGCGAGGAGAGTCTAAGGAAGCACAAATCGATGAGGAAGGTGTTTTGAGGATCAAGGGAAGGGTATGCGTACCCCGTGTTGATGATTTAATCAACACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCGATACATCCGGGTGCAACCAAGATGTACCGTGACCTAAAGCAACACTTTTGGTGGAGTAGAATGAAGCGTGATATTGTAGATTTTATTGCCAAATGTCCAAACTGTCAACAAGTAAAGTATGAACACCAAAGGCCCGGAGGAATACTTTAGAGAATGCCCATTCCGAAATGGAAATGGGAGAGAATCGCAATGGATTTTGTGGTTGGTCTTCCAAAGACGATGGGTAAGTACGACTCTATTTGGGTGATCGTTGATAGGTTAACTAAGTCTGCTCATTTTATTCCGGTCAAGGTGACTTACAATGCAGAGAAGTTAGCCAAAATCTATATCTCAGAAATTGTTCGGTTGCATGGGGTTCCACTGTCCATCATATCAGATAGAGGTACGCAGTTTACTTCCATGTTTTGGAGAACATTGCATGCTGAATTAGGTACTAGGTTGGACCTTAGTGCCGCGTTCCATCCTCAGACCGGTGGTCAGTCTGAGCGAATGATTCAAGTGTTGGAGGATATGCTTCGCGCATGTGTGATAGAGTTTGGAGGCCATTGGGATAGCTTCTTACCTTTAGCGGAATTTTCATACAATAATAGCTATCACTCAAGCATTGATATGGCTCCATTTGAAGCATTGTATGGTAGGAGATGTAGGTCCCCCATTGGTTGGTTTGATGCGTTCGAGGTTAGACCTTGGGGTACTGATCTCTTGAGGGATTCGATGGAGAAGGTGAAATCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGAGAACAAGTCTTGCTGAAGGTTTCGCTCATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAGCTAAGTCCAAGGTACATTGGTCCCTTTGAAGTACTTAAGCGAGTAGGGGAGGTGGCTTATGAATTAGCCTTGCCTCCAGGGCTGTCCGGAGTACATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAACCTGTTGCCATTCTGGATAGAGAAGTACGCAAGTTGAGGTCAAGAGAGGTTGCATCCATCAAGATGCAATGGAAGAATCGACCGGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGCAAGAAAGATACCCACATCTGTTTAAAGATTCAGGTACTCCTTCTCGCCCTTGTTTTCCTTCTTGTTATCATTCGGGGACGAACGATGGATAAATTGGTATCTATTGTAACGGCCTGTTTAGTCGTTTTGAGCAGCAGATTTTGTTTCTAGAAAAACAGGCTGAGATGACGGAACCCACGACGGACCGTCATGGACACGACGGACCGTCGAGAGGTCTCGTTTTAAAACACTTAGAAATTCTGAAAATTGGGTACTGAAAATCGACTCTCTGAACTCTGTGACGGACCTGCAAGACGGACCGTCACAGACAGGACGAACCATCGTGATCCGCCGTTTCAAAACACTTCAACTCTTGAGAATTTGGTACAGGGAACGATTCTCTGAACGTCGTGATGGAAGTGCAGGACGGACCATCGTAGGTACGACGGGCCGTCACAGACTCCTTAAGGAAATCGAGTCTCTGACGAACCTGCATGACGGACCGTCTCAGGCGCGACAGGCCGTCACAGGTTGCGTAATCCCAGTTTGGGTCGGATTCCTTTATACGTTTTAAGGGACGTTTTTGACTACTCCTGCCTTAATTATAAAGTTAGAGGGTTAATGTTAATAAGTCTAATTAATTGGGGGTTAAAGAGATAACCTTAAGTTAATTAGTGAGTTATTATTATCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTGGAATAAAGAAAATAGAAGGAACAAGAGAGAGAGGGAGAGTCGAACGAGGAAGAAAGAAGAACAAAGCTTTGAGAATTTGCTTGCTTGATCACTAGTCTTCGGTGGAGGTAGGTTATGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTAATTATATTAAGCATGATGAAGCTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTAATGACGATGCCTTGGTATAAAAGAAGGCGTGATGAACTAAATAATGGGATTGATGATGCCTTGGAAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAAGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACATAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACATAGA-TTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="98185" stop="98962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98485" g_stop="98661" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98485" e_stop="98661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAAGGTAAGAAGCTATCCCAATGGCCTCCAAACTCTATCACACATGCGCGAAGCATATCCTCCAACACTTGAATCATTCGCTCAGACTGACCACCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="99666" stop="100979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99966" g_stop="100679" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99966" e_stop="100679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGAAAAATCGGTGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTTACTATCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAAAAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACGAAGAGGTCAAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATTAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTT-AGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTG-CTCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="99666" stop="100862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99966" g_stop="100562" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99966" e_stop="100562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGAAAAATCGGTGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTTACTATCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAAAAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACGAAGAGGTCAAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATTAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTT-AGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="99666" stop="100792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99966" g_stop="100492" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99966" e_stop="100492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGAAAAATCGGTGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTTACTATCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAAAAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACGAAGAGGTCAAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATTAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTT-AGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="99737" stop="101016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100037" g_stop="100717" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100037" e_stop="100717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTTACTATCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAAAAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACGAAGAGGTCAAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATTAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTACAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTT-AGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="99737" stop="100696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100037" g_stop="100396" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100037" e_stop="100396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTTACTATCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAAAAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACGAAGAGGTCAAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATTAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTT-AGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="100187" stop="101445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100487" g_stop="101145" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100487" e_stop="101145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTACAAGGGGGTATAGAAATGGGGCGAGTACCCGGCTCAAGGTCAATACAAAAATCAATATCCCTATATGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGGACTACCGAAACCGACTCAATCAAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTGCTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGAAAGTGTAGTCACCCTCCCACACTAACGAATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGTAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTAGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="102283" stop="100275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101983" g_stop="101797" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101796" i_stop="101053" i_length="744">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101052" g_stop="100539" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101983" e_stop="101797"/>
          <exon e_start="101052" e_stop="100539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGACTAAGTTTCGTGCATTATCTCGGTATGCCACCAAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCTTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTCGTAATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCACTATGGATACTACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGCCGAGGTGATGGGCAAACTGGAGCCGCTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGTGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGAATGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTTTAAATTTACATTGTGAATTACTTGATATACCTATTCATGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCTACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTACGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATTCGTTAGTGTGGGAGGGTGACTACACTTTCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGCAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTTGATTGAGTCGGTTTCGGTAGTCCGTGAGTTTCGGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCATATAGGGATATTGATTTTTGTATTGACCTTGAGCCGGGTACTCGCCCCATTTCTATACCCCCTTGTAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="100256" stop="101617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100556" g_stop="101317" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100556" e_stop="101317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTACAAGGGGGTATAGAAATGGGGCGAGTACCCGGCTCAAGGTCAATACAAAAATCAATATCCCTATATGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGGACTACCGAAACCGACTCAATCAAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTGCTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGAAAGTGTAGTCACCCTCCCACACTAACGAATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGTAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTAGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACATGAATAGGTATATCAAGTAATTCACAATGTAAATTTAAACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCATTCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="100256" stop="101516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100556" g_stop="101216" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100556" e_stop="101216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTACAAGGGGGTATAGAAATGGGGCGAGTACCCGGCTCAAGGTCAATACAAAAATCAATATCCCTATATGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGGACTACCGAAACCGACTCAATCAAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTGCTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGAAAGTGTAGTCACCCTCCCACACTAACGAATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGTAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTAGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACATGAATAGGTATATCAAGTAATTCACAATGTAAATTTAAACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="100866" stop="102024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101166" g_stop="101724" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101166" e_stop="101724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGAATAGGTATATCAAGTAATTCACAATGTAAATTTAAACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCATTCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCACTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGCGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="100950" stop="102339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101250" g_stop="102039" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101250" e_stop="102039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCATTCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCACTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGCGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTAGTATCCATAGTGAAGTCATCTGGCTTCACTCCCTCTACCTCTATTACGAAGTCTACCACTTCTTGAAAAGATTTCGCTGTAGCCGCTACCTGTAAAGCTGAAATCCGCAACTCTGATCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACATAGTTTGGTGGCATACCGAGATAATGCACGAAACTTAGTCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="100952" stop="102054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101252" g_stop="101785" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101252" e_stop="101785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCATTCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCACTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGCGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTAGTATCCATAGTGAAGTCATCTGGCTTCACTCCCTCT</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="+" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="101026" stop="102323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101326" g_stop="102023" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101326" e_stop="102023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGCGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTAGTATCCATAGTGAAGTCATCTGGCTTCACTCCCTCTACCTCTATTACGAAGTCTACCACTTCTTGAAAAGATTTCGCTGTAGCCGCTACCTGTAAAGCTGAAATCCGCAACTCTGATCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACATAGTTTGGTGGCATACCGAGATAATGCACGAAACTTAGTCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="104593" stop="103591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104293" g_stop="103890" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104293" e_stop="103890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATTAAGCATGATGAAGCTATTGAATCCCAAATCTTGATAAAAACCTAATCTC-TTTTAATGACGATGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGATACTTAGAATTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="106896" stop="105489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106596" g_stop="105789" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106596" e_stop="105789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCATGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATATTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGATCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTAAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATACAGTCAGTGTAGTGAGAAGATTCATGGGACAACCAGGGAAAGAACATTGGCAGGCTGTGAAGAGAATAGTCCGGTACCTTAGAGGTACATCTGACATTGGTCTCATTTATGAAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="107555" stop="106307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107255" g_stop="106607" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107255" e_stop="106607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGGGCGATTTGAAAGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCTAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGAGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAATCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGATATGGAGTCCCTACACAAGAATCAGACATGGGATTTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGAAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAACGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="107554" stop="106570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107254" g_stop="106870" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107254" e_stop="106870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGGGCGATTTGAAAGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCTAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGAGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAATCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGATATGGAGTCCCTACACAAGAATCAGACATGGGATTTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738309" ref_strand="+" ref_description="SGN-E738309 [LC13AG06]">
      <seq>gaggacataattgtcagtgtcttcatacatcttttacctgggttggttttcttcacaattcgctggtgggatcctgagttttttggagctatgcatcctgaaggaactccagaacgagcatcatggccttatgtagaaagccagtcctacctttggacttggctattttgggtaccgttagctgcatactttctctggcaggttctctattaccttatagtagatgtcctacgtcgacagaggtttctgcgagaccctgaagtcatgacatcttacagggagctctccaaaaaggcaaagaaagcaaacaacgtatggtggcgtgttagtggtttgcttggggaccagaatcgcttgcttatgtatattctgctgcaggccatatttactgtagcaactacagcgctcacagtgcccatatttctgtcatataagttgcatgttgtattccaaatcttcaaagtttcagcatctatatggaatggtggaaactttatgcttgatgtgatgcccagacaagtgattctcaaggaggaaaagaaaaagtcaaagatgtcaactgtccccgaccagaacgatgagatttctttacacgagaccaacgacacttctgaaacagttcattcagaataatggaagtgttcatcatctgatttagctgttgttaacttttctatctgctttacacatgaatgaaaggtttaagttgtgtgactcacaaagttgtagatttggtgaaagggaaaatgaactatcttcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="122034" stop="119428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121737" g_stop="121698" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121697" i_stop="120604" i_length="1094">
            <donor d_prob="0.969" d_score="0.90"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120603" g_stop="120366" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="278" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120365" i_stop="120210" i_length="156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120209" g_stop="119723" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="765" r_length="487" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E738309" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121737" e_stop="121698"/>
          <exon e_start="120603" e_stop="120366"/>
          <exon e_start="120209" e_stop="119723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATAAAATTGTCAGTGTCTTCATACATCTTTTACCTGGTAAGTAGTGCATTCTTTTGTTTTCCTATTGCGGCCGATATCAACTTATTCACTCCCACCAATGAAACTACTGCATCACTCTAAATATAAGAGGGTGTCTTGTTTTGGATATACTCATGCATATGTATAGTTGAATCCCTGTTATTTCTCCATATTTGGTTGTGGTTTCATTCTAAGGATCTGGTTTTTGAGTTCAGTGCTGCTTTAAAACCTCTAGTAGATTACATGTTGGGTTGTCCATTTGGATTATCATTTCTCTGCTCTTTGATTACATAGCTTGGTGTTTCATTATCAAAGTATTTGTCTCAATGTGTAATTGCTACAAAGGTTTAGTTGTGTAAAGTTATTTTTAGAAGGAAAAGAAAAAGGAGATGAAATGAGGTTTATTGATATTCCTCTTTTGAGAGCTTGTCTGGTTGCCTCGTGTTTCCCACTTTTATTTGTAATTTCTATTATGATCATGCCTTCGTAAATAATATTTGATTTGATCAATTTAGCTTTGTACAGTATAGGTCAACAGTAGGTCGATTGTAATAAGGGTACCCTTCCAATTTTCTATTGATGCCTGATAGATACCATATGCTTCGTGGGTGTTCAATTCCTCTGAAAGCTAATTCTTCAAAGTCTGTCAGAGTTGATTAGTTGTAAATTGTACTTATCTGGTTGTTCAACTTCTGCTCCAGAAAATCGTGTAAAATACCCAGTGACTAATCACCTTTTAGTGCTGCATTCTGTGAAACATGTTTCGAAGTTTGTCAGTGATCTTAGTTGTAATTATCTGGCTGGTCAGCCTCTGCTGCAGCATATCATGTAAAACACTCAATCAACTATTTTATGAAAAGTAAAAATGTAAGACACTCAATAAGTTATCAAACATTTAGTGCTGCACTGTGTTAATAACTAGAAGTAGTAAGCTTTCTGTTCAGAGATCATAAGATGTTTATGTGACCATTGTATTACGAATGATATATCCTTTGGAATTGTAGTTCTACTTTTTTCAAATGAACTAGAAAGTTTGCCTGTTTTCTCTCCATATTAATTTAACAGAACTCTTGGCTAGTAAATTAATTACCTCCAACCATTCTGATCTGCAGGGTTGGTTTTCTTCACAATTCGCTGGTGGGATCCTGAGTTTTTTGGAGCTATGCATCCTGAAGGAACTCCAGAACGAGCATCATGGCCTTATGTAGAAAGCCAGTCCTACCTTTGGACTTGGCTATTTTGGGTACCGTTAGCTGCATACTTTCTCTGGCAGGTTCTCTATTACCTTATAGTAGATGTCCTACGTCGACAGAGGTTTCTGCGAGACCCTGAAGTCATGACATCTTACAGGTAGTCATAGTGTTCTAATTTTTGCTGCCTATGATAAAGTCTTATTTTGGTTCATGTACTTTTCTTTCTCCATCTGTCCTTGTGCTAGTTTGTGAACGTTAGCGTGGGTCATTATGTTTATTTTATTCCTGGCTGTTAATATTCATTATTTGGTAGGGAGCTCTCCAAAAAGGCAAAGAAAGCAAACAACGTATGGTGGCGTGTTAGTGGTTTGCTTGGGGACCAGAATCGCTTGCTTATGTATATTCTGCTGCAGGCCATATTTACTGTAGCAACTACAGCGCTCACAGTGCCCATATTTCTGTCATATAAGTTGCATGTTGTATTCCAAATCTTCAAAGTTTCAGCATCTATATGGAATGGTGGAAACTTTATGCTTGATGTGATGCCCAGACAAGTGATTCTCAAGGAGGAAAAGAAAAAGTCAAAGATGTCAACTGTCCCCGACCAGAACGATGAGATTTCTTTACACGAGACCAACGACACTTCTGAAACAGTTCATTCAGAATAATGGAAGTGTTCATCATCTGATTTAGCTGTTGTTAACTTTTCTATCTGCTTTACACATGAATGAAAGGTTTAAGTTGTGTGACTCACAAAGTTGTAGATTTGGTGAAAGGGAAAATGAACTATCTTCATTCTA</genome_strand>
        <mrna_strand>GAGGACATAATTGTCAGTGTCTTCATACATCTTTTACCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGTTTTCTTCACAATTCGCTGGTGGGATCCTGAGTTTTTTGGAGCTATGCATCCTGAAGGAACTCCAGAACGAGCATCATGGCCTTATGTAGAAAGCCAGTCCTACCTTTGGACTTGGCTATTTTGGGTACCGTTAGCTGCATACTTTCTCTGGCAGGTTCTCTATTACCTTATAGTAGATGTCCTACGTCGACAGAGGTTTCTGCGAGACCCTGAAGTCATGACATCTTACAG............................................................................................................................................................GGAGCTCTCCAAAAAGGCAAAGAAAGCAAACAACGTATGGTGGCGTGTTAGTGGTTTGCTTGGGGACCAGAATCGCTTGCTTATGTATATTCTGCTGCAGGCCATATTTACTGTAGCAACTACAGCGCTCACAGTGCCCATATTTCTGTCATATAAGTTGCATGTTGTATTCCAAATCTTCAAAGTTTCAGCATCTATATGGAATGGTGGAAACTTTATGCTTGATGTGATGCCCAGACAAGTGATTCTCAAGGAGGAAAAGAAAAAGTCAAAGATGTCAACTGTCCCCGACCAGAACGATGAGATTTCTTTACACGAGACCAACGACACTTCTGAAACAGTTCATTCAGAATAATGGAAGTGTTCATCATCTGATTTAGCTGTTGTTAACTTTTCTATCTGCTTTACACATGAATGAAAGGTTTAAGTTGTGTGACTCACAAAGTTGTAGATTTGGTGAAAGGGAAAATGAACTATCTTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239812" ref_strand="+" ref_description="SGN-E239812 [cLED-29-K16]">
      <seq>cttggggaccagaatcgcttgcttatgtatattctgctgcaggccatatttactggagcaactacagcgctcacagtgcccatatttctgtcatataagttgcatgttgtattccaaatcttcaaagtttcagcatctatatggaatggtggaaactatatgcttgatgtgatgcccagacaagtgaatctcaaggaggaaaagaaaaagtcaaagatgtcaactgtccccgaccagaacgatgagatttctttacacgagaccaacgacacttctgaaacagatcattcagaataatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0111C06-Z3VMw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0111C06.1" temp_strand="-" temp_description="C07SLm0111C06.1  AC212654.1 htgs_phase:1 submitted_to_sgn_as:gi|158262147|gb|AC212654.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0111C06, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="120451" stop="119550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120151" g_stop="119850" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0111C06.1" gen_strand="-" ref_id="SGN-E239812" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0111C06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120151" e_stop="119850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGGACCAGAATCGCTTGCTTATGTATATTCTGCTGCAGGCCATATTTACTGTAGCAACTACAGCGCTCACAGTGCCCATATTTCTGTCATATAAGTTGCATGTTGTATTCCAAATCTTCAAAGTTTCAGCATCTATATGGAATGGTGGAAACTTTATGCTTGATGTGATGCCCAGACAAGTGATTCTCAAGGAGGAAAAGAAAAAGTCAAAGATGTCAACTGTCCCCGACCAGAACGATGAGATTTCTTTACACGAGACCAACGACACTTCTGAAACAGTTCATTCAGAATAATGGAA</genome_strand>
        <mrna_strand>CTTGGGGACCAGAATCGCTTGCTTATGTATATTCTGCTGCAGGCCATATTTACTGGAGCAACTACAGCGCTCACAGTGCCCATATTTCTGTCATATAAGTTGCATGTTGTATTCCAAATCTTCAAAGTTTCAGCATCTATATGGAATGGTGGAAACTATATGCTTGATGTGATGCCCAGACAAGTGAATCTCAAGGAGGAAAAGAAAAAGTCAAAGATGTCAACTGTCCCCGACCAGAACGATGAGATTTCTTTACACGAGACCAACGACACTTCTGAAACAGATCATTCAGAATAATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>64</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9340" PGL_stop="9975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9340" e_stop="9549"/>
            <exon e_start="9630" e_stop="9975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.891" acc_prob="0.980" e_score="0.967"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="9340" e_stop="9549" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.891" acc_prob="0.980">
            <gDNA_intron_boundary i_start="9550" i_stop="9629" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="9630" e_stop="9975" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9340" stop="9549"/>
              <exon start="9630" stop="9975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538254" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTACAATCACGCCCCTCCAGCTAATCTTTTAGAGGGAAGGGGAACGCAAAGTGGTGCACACGTTGATATAATGGGAAATTTTGCACTTATTGAAGATATCATTANAGTAGCTGCTGGGGCTACTGGAGAAGACCTGGGAGGAGATCAATTATACTCGGGTATTTTCAAGTGGTCTGAAAGGATTAAACTGAAGCTTTAAATTTCAAATG : AATTTCATGGGTGCAATCAATTGGTTTGAGGAACTGGTGGTGCTCTACTATACGTCNTGCTTCTCGTCTCCTGGCTGAAACATCTGCTGTATACTTGAAACAATAATACTCTGGGAAACCTGAAGCTGCAAATGTCGCAGGAAGCATGGATGTATAGGTAAATTTTGGACATAACATTGATTTTTTGCCTGTAATTATATGATCCTTGATAGCATAGTGTAGTCTGTAGACCTAATATTGGAGCACAAGTACTGCATTTATATGTTCAATTATTACACAGCACACAAGGAGGGACAAGTGTATTTCTATCGTGGGTTATTTGAAATTTATAAGTAAATATTTACTC</gDNA_template>
            <first_frame> S  T  I  T  P  L  Q  L  I  F  *  R  E  G  E  R  K  V  V  H  T  L  I  *  W  E  I  L  H  L  L  K  I  S  L  *  *  L  L  G  L  L  E  K  T  W  E  E  I  N  Y  T  R  V  F  S  S  G  L  K  G  L  N  *  S  F  K  F  Q  M  :  N  F  M  G  A  I  N  W  F  E  E  L  V  V  L  Y  Y  T  S  C  F  S  S  P  G  *  N  I  C  C  I  L  E  T  I  I  L  W  E  T  *  S  C  K  C  R  R  K  H  G  C  I  G  K  F  W  T  *  H  *  F  F  A  C  N  Y  M  I  L  D  S  I  V  *  S  V  D  L  I  L  E  H  K  Y  C  I  Y  M  F  N  Y  Y  T  A  H  K  E  G  Q  V  Y  F  Y  R  G  L  F  E  I  Y  K  *  I  F  T  </first_frame>
            <second_frame>  V  Q  S  R  P  S  S  *  S  F  R  G  K  G  N  A  K  W  C  T  R  *  Y  N  G  K  F  C  T  Y  *  R  Y  H  Y  S  S  C  W  G  Y  W  R  R  P  G  R  R  S  I  I  L  G  Y  F  Q  V  V  *  K  D  *  T  E  A  L  N  F  K  * :   I  S  W  V  Q  S  I  G  L  R  N  W  W  C  S  T  I  R  L  A  S  R  L  L  A  E  T  S  A  V  Y  L  K  Q  *  Y  S  G  K  P  E  A  A  N  V  A  G  S  M  D  V  *  V  N  F  G  H  N  I  D  F  L  P  V  I  I  *  S  L  I  A  *  C  S  L  *  T  *  Y  W  S  T  S  T  A  F  I  C  S  I  I  T  Q  H  T  R  R  D  K  C  I  S  I  V  G  Y  L  K  F  I  S  K  Y  L  L </second_frame>
            <third_frame>   Y  N  H  A  P  P  A  N  L  L  E  G  R  G  T  Q  S  G  A  H  V  D  I  M  G  N  F  A  L  I  E  D  I  I  I  V  A  A  G  A  T  G  E  D  L  G  G  D  Q  L  Y  S  G  I  F  K  W  S  E  R  I  K  L  K  L  *  I  S  N   : E  F  H  G  C  N  Q  L  V  *  G  T  G  G  A  L  L  Y  V  L  L  L  V  S  W  L  K  H  L  L  Y  T  *  N  N  N  T  L  G  N  L  K  L  Q  M  S  Q  E  A  W  M  Y  R  *  I  L  D  I  T  L  I  F  C  L  *  L  Y  D  P  *  *  H  S  V  V  C  R  P  N  I  G  A  Q  V  L  H  L  Y  V  Q  L  L  H  S  T  Q  G  G  T  S  V  F  L  S  W  V  I  *  N  L  *  V  N  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9342" stop="9539"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNHAPPANLLEGRGTQSGAHVDIMGNFALIEDIIIVAAGATGEDLGGDQLYSGIFKWSERIKLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="19643" PGL_stop="15614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19643" e_stop="19533"/>
            <exon e_start="19454" e_stop="19422"/>
            <exon e_start="18234" e_stop="18006"/>
            <exon e_start="17624" e_stop="17489"/>
            <exon e_start="16154" e_stop="15614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.386" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19643" e_stop="19533" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="19532" i_stop="19455" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19454" e_stop="19422" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="19421" i_stop="18235" i_length="1187"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18234" e_stop="18006" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.955">
            <gDNA_intron_boundary i_start="18005" i_stop="17625" i_length="381"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17624" e_stop="17489" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="0.386" acc_prob="0.978">
            <gDNA_intron_boundary i_start="17488" i_stop="16155" i_length="1334"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="16154" e_stop="15614" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19643" stop="19533"/>
              <exon start="19454" stop="19422"/>
              <exon start="18234" stop="18006"/>
              <exon start="17624" stop="17489"/>
              <exon start="16154" stop="15760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19639" stop="19533"/>
              <exon start="19454" stop="19422"/>
              <exon start="18234" stop="18006"/>
              <exon start="17624" stop="17489"/>
              <exon start="16154" stop="15997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19625" stop="19533"/>
              <exon start="19454" stop="19422"/>
              <exon start="18234" stop="18006"/>
              <exon start="17624" stop="17489"/>
              <exon start="16154" stop="16032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19537" stop="19533"/>
              <exon start="19454" stop="19422"/>
              <exon start="18234" stop="18006"/>
              <exon start="17624" stop="17489"/>
              <exon start="16154" stop="15614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17581" stop="17489"/>
              <exon start="16154" stop="15757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16035" stop="15666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221555" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCCATTGTTAAGATGGAAGGAGGTGCACAGTACAATCCTCGCACCGTGGAAGAAGTTTTTAAGGATTTTACCGGCCGTCGAACCGGCATGATCAAAGCCCTCACCACTG : ATGTGGAGGATTTTTATCATCAATGTGACCCTG : AAAAGGAAAATCTCTGCCTCTATGGATATCCAAGTGAGCAGTGGGAAGTCAATTTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCACTAGGTATAAACTTCGCTAGAGATGGGATGCAAGAAAAGGAATGGTTAGCTCTAGTTGCTGTACATAGTGATGCATGGCTACTCTCTGTTTCCTTCTATTTTGGTGCCAGATTCGGCTTTGATAGAGCTGACAG : GAAACGTCTTTTCAACATGATGAATGATCTGCCAACAATATATGAAGTTGTTACTGGAGTGGCCAAGAAGAGAGTAAAGGATAAATCAACAGTTTCAAATCACAGCAGCAACAAGTCAAAATCAAATTCTAAAGCG : GGTAAATACTCAAAGCCTCAAGTAAAAGATGAGGATGATGGATTTGATGAGGAAGAAGAAGATGAACATGGCGACACTCTGTGTGGTGCATGTGGTGAGAACTATGCTTCAGATGAATTCTGGATTTTCTGTGACATGTGCGAGAGGTGGTTCCATGGAAACTGTGTGAAGATCACCCCTGCCAAGGCCGAGCATATAAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGGATACGCCCATGACATCCCCTATCAGATATGTGCTGAGTTCCACAACTTGTAATTGTTCATGTTGAGCTCAGCTCACTGCCATCTTACAAATATCAGTAAGGCATGTGTAGTCAGAGTCCTAGTCTCTTATGTTTATCAGGGTGCTTAACTAGTTTAGTTCCCTCAAGACACCCTTTTATTCAACTCTAAACAATTGGATATTAGATGCATAAACTTTCAGTATCAAATGCTAACTAAACGCAGTTCGTCTGAAGCATATGTTGCAGCTGTAGTTTTTGGGTGCTCCTTGTTTGATCATAAAACGTGT</gDNA_template>
            <first_frame> D  P  L  L  R  W  K  E  V  H  S  T  I  L  A  P  W  K  K  F  L  R  I  L  P  A  V  E  P  A  *  S  K  P  S  P  L  :  M  W  R  I  F  I  I  N  V  T  L  :  K  R  K  I  S  A  S  M  D  I  Q  V  S  S  G  K  S  I  C  Q  L  R  R  C  L  Q  S  F  Q  S  Q  H  *  V  *  T  S  L  E  M  G  C  K  K  R  N  G  *  L  *  L  L  Y  I  V  M  H  G  Y  S  L  F  P  S  I  L  V  P  D  S  A  L  I  E  L  T   : G  N  V  F  S  T  *  *  M  I  C  Q  Q  Y  M  K  L  L  L  E  W  P  R  R  E  *  R  I  N  Q  Q  F  Q  I  T  A  A  T  S  Q  N  Q  I  L  K  R :   V  N  T  Q  S  L  K  *  K  M  R  M  M  D  L  M  R  K  K  K  M  N  M  A  T  L  C  V  V  H  V  V  R  T  M  L  Q  M  N  S  G  F  S  V  T  C  A  R  G  G  S  M  E  T  V  *  R  S  P  L  P  R  P  S  I  *  S  S  T  N  A  L  H  A  A  T  R  G  Y  A  H  D  I  P  Y  Q  I  C  A  E  F  H  N  L  *  L  F  M  L  S  S  A  H  C  H  L  T  N  I  S  K  A  C  V  V  R  V  L  V  S  Y  V  Y  Q  G  A  *  L  V  *  F  P  Q  D  T  L  L  F  N  S  K  Q  L  D  I  R  C  I  N  F  Q  Y  Q  M  L  T  K  R  S  S  S  E  A  Y  V  A  A  V  V  F  G  C  S  L  F  D  H  K  T  C </first_frame>
            <second_frame>  I  H  C  *  D  G  R  R  C  T  V  Q  S  S  H  R  G  R  S  F  *  G  F  Y  R  P  S  N  R  H  D  Q  S  P  H  H  * :   C  G  G  F  L  S  S  M  *  P  * :   K  G  K  S  L  P  L  W  I  S  K  *  A  V  G  S  Q  F  A  S  *  G  G  A  S  R  A  S  R  A  S  T  R  Y  K  L  R  *  R  W  D  A  R  K  G  M  V  S  S  S  C  C  T  *  *  C  M  A  T  L  C  F  L  L  F  W  C  Q  I  R  L  *  *  S  *  Q  :  E  T  S  F  Q  H  D  E  *  S  A  N  N  I  *  S  C  Y  W  S  G  Q  E  E  S  K  G  *  I  N  S  F  K  S  Q  Q  Q  Q  V  K  I  K  F  *  S   : G  *  I  L  K  A  S  S  K  R  *  G  *  W  I  *  *  G  R  R  R  *  T  W  R  H  S  V  W  C  M  W  *  E  L  C  F  R  *  I  L  D  F  L  *  H  V  R  E  V  V  P  W  K  L  C  E  D  H  P  C  Q  G  R  A  Y  K  A  V  Q  M  P  F  M  Q  Q  Q  E  D  T  P  M  T  S  P  I  R  Y  V  L  S  S  T  T  C  N  C  S  C  *  A  Q  L  T  A  I  L  Q  I  S  V  R  H  V  *  S  E  S  *  S  L  M  F  I  R  V  L  N  *  F  S  S  L  K  T  P  F  Y  S  T  L  N  N  W  I  L  D  A  *  T  F  S  I  K  C  *  L  N  A  V  R  L  K  H  M  L  Q  L  *  F  L  G  A  P  C  L  I  I  K  R   </second_frame>
            <third_frame>   S  I  V  K  M  E  G  G  A  Q  Y  N  P  R  T  V  E  E  V  F  K  D  F  T  G  R  R  T  G  M  I  K  A  L  T  T   : D  V  E  D  F  Y  H  Q  C  D  P   : E  K  E  N  L  C  L  Y  G  Y  P  S  E  Q  W  E  V  N  L  P  A  E  E  V  P  P  E  L  P  E  P  A  L  G  I  N  F  A  R  D  G  M  Q  E  K  E  W  L  A  L  V  A  V  H  S  D  A  W  L  L  S  V  S  F  Y  F  G  A  R  F  G  F  D  R  A  D  R :   K  R  L  F  N  M  M  N  D  L  P  T  I  Y  E  V  V  T  G  V  A  K  K  R  V  K  D  K  S  T  V  S  N  H  S  S  N  K  S  K  S  N  S  K  A  :  G  K  Y  S  K  P  Q  V  K  D  E  D  D  G  F  D  E  E  E  E  D  E  H  G  D  T  L  C  G  A  C  G  E  N  Y  A  S  D  E  F  W  I  F  C  D  M  C  E  R  W  F  H  G  N  C  V  K  I  T  P  A  K  A  E  H  I  K  Q  Y  K  C  P  S  C  S  N  K  R  I  R  P  *  H  P  L  S  D  M  C  *  V  P  Q  L  V  I  V  H  V  E  L  S  S  L  P  S  Y  K  Y  Q  *  G  M  C  S  Q  S  P  S  L  L  C  L  S  G  C  L  T  S  L  V  P  S  R  H  P  F  I  Q  L  *  T  I  G  Y  *  M  H  K  L  S  V  S  N  A  N  *  T  Q  F  V  *  S  I  C  C  S  C  S  F  W  V  L  L  V  *  S  *  N  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19641" stop="19533"/>
                    <exon start="19454" stop="19422"/>
                    <exon start="18234" stop="18006"/>
                    <exon start="17624" stop="17489"/>
                    <exon start="16154" stop="15909"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIVKMEGGAQYNPRTVEEVFKDFTGRRTGMIKALTTDVEDFYHQCDPEKENLCLYGYPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKEWLALVAVHSDAWLLSVSFYFGARFGFDRADRKRLFNMMNDLPTIYEVVTGVAKKRVKDKSTVSNHSSNKSKSNSKAGKYSKPQVKDEDDGFDEEEEDEHGDTLCGACGENYASDEFWIFCDMCERWFHGNCVKITPAKAEHIKQYKCPSCSNKRIRP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17201" e_stop="16589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="17201" e_stop="16589" e_length="613"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17201" stop="16589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17201" stop="16590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17200" stop="16816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17200" stop="16984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260306" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGACAGCAGTAAGTGGCATATTTAGTGATGTTTTGCTATTGTCATAGAAGTTTAATAACATTGAGAGGTAGAAATCAGGAAAGTGAAGCATTTGTATAATGTTCTCCTACAGTGGAAAACTAATCTTTCTGCCCTGTTATAGTATAGGAGTTCAAACGGGCCTCCTAAGTTGATATATTGTTGATTTGTCATTTTCTTGTATAATTGCTTACCTTGGTGTTCGGTGTAAAAACAGAACAGGCTTGCGTCTATGCATTTCTGGGCAGGTCACGTAATGGTTACCCCGTTTCTAGTTTGAGGAAGGCTTATTAGTCAGTTAAAAGTGATTTGAACTATAGTAATTACAATTGTGTTTATGCTTAAGTTTGATAGAAGAGGCTTTTTAGATGCCTAGGTACTAGGGTGAAGTCAATGCTGGATAGAAGAGGTATTGTGTAAGGTAAACTATGAGATTCCTATGAAGCCTTAGTGTTGTGTTATTATTATTAATCTATCATTTCTCCTATGTAACTTCATTCAATGTTTTATGTCTACCTCAACTCCTGCAGCTGCTTCATCATTGGCCTTTTTGCATAAATTGATTCTCTATCTAAAATTATTTGTGATTTTGG</gDNA_template>
            <first_frame> L  D  S  S  K  W  H  I  *  *  C  F  A  I  V  I  E  V  *  *  H  *  E  V  E  I  R  K  V  K  H  L  Y  N  V  L  L  Q  W  K  T  N  L  S  A  L  L  *  Y  R  S  S  N  G  P  P  K  L  I  Y  C  *  F  V  I  F  L  Y  N  C  L  P  W  C  S  V  *  K  Q  N  R  L  A  S  M  H  F  W  A  G  H  V  M  V  T  P  F  L  V  *  G  R  L  I  S  Q  L  K  V  I  *  T  I  V  I  T  I  V  F  M  L  K  F  D  R  R  G  F  L  D  A  *  V  L  G  *  S  Q  C  W  I  E  E  V  L  C  K  V  N  Y  E  I  P  M  K  P  *  C  C  V  I  I  I  N  L  S  F  L  L  C  N  F  I  Q  C  F  M  S  T  S  T  P  A  A  A  S  S  L  A  F  L  H  K  L  I  L  Y  L  K  L  F  V  I  L  </first_frame>
            <second_frame>  S  T  A  V  S  G  I  F  S  D  V  L  L  L  S  *  K  F  N  N  I  E  R  *  K  S  G  K  *  S  I  C  I  M  F  S  Y  S  G  K  L  I  F  L  P  C  Y  S  I  G  V  Q  T  G  L  L  S  *  Y  I  V  D  L  S  F  S  C  I  I  A  Y  L  G  V  R  C  K  N  R  T  G  L  R  L  C  I  S  G  Q  V  T  *  W  L  P  R  F  *  F  E  E  G  L  L  V  S  *  K  *  F  E  L  *  *  L  Q  L  C  L  C  L  S  L  I  E  E  A  F  *  M  P  R  Y  *  G  E  V  N  A  G  *  K  R  Y  C  V  R  *  T  M  R  F  L  *  S  L  S  V  V  L  L  L  L  I  Y  H  F  S  Y  V  T  S  F  N  V  L  C  L  P  Q  L  L  Q  L  L  H  H  W  P  F  C  I  N  *  F  S  I  *  N  Y  L  *  F  W </second_frame>
            <third_frame>   R  Q  Q  *  V  A  Y  L  V  M  F  C  Y  C  H  R  S  L  I  T  L  R  G  R  N  Q  E  S  E  A  F  V  *  C  S  P  T  V  E  N  *  S  F  C  P  V  I  V  *  E  F  K  R  A  S  *  V  D  I  L  L  I  C  H  F  L  V  *  L  L  T  L  V  F  G  V  K  T  E  Q  A  C  V  Y  A  F  L  G  R  S  R  N  G  Y  P  V  S  S  L  R  K  A  Y  *  S  V  K  S  D  L  N  Y  S  N  Y  N  C  V  Y  A  *  V  *  *  K  R  L  F  R  C  L  G  T  R  V  K  S  M  L  D  R  R  G  I  V  *  G  K  L  *  D  S  Y  E  A  L  V  L  C  Y  Y  Y  *  S  I  I  S  P  M  *  L  H  S  M  F  Y  V  Y  L  N  S  C  S  C  F  I  I  G  L  F  A  *  I  D  S  L  S  K  I  I  C  D  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0111C06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="18950" e_stop="18863"/>
            <exon e_start="18234" e_stop="18006"/>
            <exon e_start="17624" e_stop="17226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18950" e_stop="18863" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="18862" i_stop="18235" i_length="628"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18234" e_stop="18006" e_length="229"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.955">
            <gDNA_intron_boundary i_start="18005" i_stop="17625" i_length="381"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="17624" e_stop="17226" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18950" stop="18863"/>
              <exon start="18234" stop="18006"/>
              <exon start="17624" stop="17226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTTAGAGTTGTTTAATGGGGTGTTGGTTTTCTGCTTGCGTCTAGAGCTGTTCATAATGCTTCAAGAACACTACTCTCTCTGTTAT : AAAAGGAAAATCTCTGCCTCTATGGATATCCAAGTGAGCAGTGGGAAGTCAATTTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCACTAGGTATAAACTTCGCTAGAGATGGGATGCAAGAAAAGGAATGGTTAGCTCTAGTTGCTGTACATAGTGATGCATGGCTACTCTCTGTTTCCTTCTATTTTGGTGCCAGATTCGGCTTTGATAGAGCTGACAG : GAAACGTCTTTTCAACATGATGAATGATCTGCCAACAATATATGAAGTTGTTACTGGAGTGGCCAAGAAGAGAGTAAAGGATAAATCAACAGTTTCAAATCACAGCAGCAACAAGTCAAAATCAAATTCTAAAGCGGTACTGTTGAAAACCTCTCCAGTCCCCAATCCTTCTCTCTTCTCTCAAATAGATGTTTTTCTTGGATAACAGTAGCTGTGCAGTAGTGTTCAAAGGATTCCCTTTGGACAGTATTTAGCTGAAAACCTTCAGCTTTAGGACATTGCCACTGAATTCTTTCCTAAATTTATGTTTGTCAATCTAAGATATGGTCAATGAATCACTAGATGGATCCTCTCTGATTTTGAGCCATGGTTCAGATTTCAATCATCCACACCCATTTT</gDNA_template>
            <first_frame> D  F  R  V  V  *  W  G  V  G  F  L  L  A  S  R  A  V  H  N  A  S  R  T  L  L  S  L  L   : *  K  E  N  L  C  L  Y  G  Y  P  S  E  Q  W  E  V  N  L  P  A  E  E  V  P  P  E  L  P  E  P  A  L  G  I  N  F  A  R  D  G  M  Q  E  K  E  W  L  A  L  V  A  V  H  S  D  A  W  L  L  S  V  S  F  Y  F  G  A  R  F  G  F  D  R  A  D  R :   K  R  L  F  N  M  M  N  D  L  P  T  I  Y  E  V  V  T  G  V  A  K  K  R  V  K  D  K  S  T  V  S  N  H  S  S  N  K  S  K  S  N  S  K  A  V  L  L  K  T  S  P  V  P  N  P  S  L  F  S  Q  I  D  V  F  L  G  *  Q  *  L  C  S  S  V  Q  R  I  P  F  G  Q  Y  L  A  E  N  L  Q  L  *  D  I  A  T  E  F  F  P  K  F  M  F  V  N  L  R  Y  G  Q  *  I  T  R  W  I  L  S  D  F  E  P  W  F  R  F  Q  S  S  T  P  I   </first_frame>
            <second_frame>  I  L  E  L  F  N  G  V  L  V  F  C  L  R  L  E  L  F  I  M  L  Q  E  H  Y  S  L  C  Y  :  K  R  K  I  S  A  S  M  D  I  Q  V  S  S  G  K  S  I  C  Q  L  R  R  C  L  Q  S  F  Q  S  Q  H  *  V  *  T  S  L  E  M  G  C  K  K  R  N  G  *  L  *  L  L  Y  I  V  M  H  G  Y  S  L  F  P  S  I  L  V  P  D  S  A  L  I  E  L  T   : G  N  V  F  S  T  *  *  M  I  C  Q  Q  Y  M  K  L  L  L  E  W  P  R  R  E  *  R  I  N  Q  Q  F  Q  I  T  A  A  T  S  Q  N  Q  I  L  K  R  Y  C  *  K  P  L  Q  S  P  I  L  L  S  S  L  K  *  M  F  F  L  D  N  S  S  C  A  V  V  F  K  G  F  P  L  D  S  I  *  L  K  T  F  S  F  R  T  L  P  L  N  S  F  L  N  L  C  L  S  I  *  D  M  V  N  E  S  L  D  G  S  S  L  I  L  S  H  G  S  D  F  N  H  P  H  P  F  </second_frame>
            <third_frame>   F  *  S  C  L  M  G  C  W  F  S  A  C  V  *  S  C  S  *  C  F  K  N  T  T  L  S  V  I :   K  G  K  S  L  P  L  W  I  S  K  *  A  V  G  S  Q  F  A  S  *  G  G  A  S  R  A  S  R  A  S  T  R  Y  K  L  R  *  R  W  D  A  R  K  G  M  V  S  S  S  C  C  T  *  *  C  M  A  T  L  C  F  L  L  F  W  C  Q  I  R  L  *  *  S  *  Q  :  E  T  S  F  Q  H  D  E  *  S  A  N  N  I  *  S  C  Y  W  S  G  Q  E  E  S  K  G  *  I  N  S  F  K  S  Q  Q  Q  Q  V  K  I  K  F  *  S  G  T  V  E  N  L  S  S  P  Q  S  F  S  L  L  S  N  R  C  F  S  W  I  T  V  A  V  Q  *  C  S  K  D  S  L  W  T  V  F  S  *  K  P  S  A  L  G  H  C  H  *  I  L  S  *  I  Y  V  C  Q  S  K  I  W  S  M  N  H  *  M  D  P  L  *  F  *  A  M  V  Q  I  S  I  I  H  T  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18232" stop="18006"/>
                    <exon start="17624" stop="17420"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KENLCLYGYPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKEWLALVAVHSDAWLLSVSFYFGARFGFDRADRKRLFNMMNDLPTIYEVVTGVAKKRVKDKSTVSNHSSNKSKSNSKAVLLKTSPVPNPSLFSQIDVFLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="27833" PGL_stop="21317"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27833" e_stop="27468"/>
            <exon e_start="26615" e_stop="26580"/>
            <exon e_start="26445" e_stop="26367"/>
            <exon e_start="26268" e_stop="26214"/>
            <exon e_start="26129" e_stop="26013"/>
            <exon e_start="24564" e_stop="24400"/>
            <exon e_start="22659" e_stop="22398"/>
            <exon e_start="21768" e_stop="21317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27833" e_stop="27468" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.991">
            <gDNA_intron_boundary i_start="27467" i_stop="26616" i_length="852"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26615" e_stop="26580" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.947">
            <gDNA_intron_boundary i_start="26579" i_stop="26446" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26445" e_stop="26367" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.803" acc_prob="0.984">
            <gDNA_intron_boundary i_start="26366" i_stop="26269" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26268" e_stop="26214" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="26213" i_stop="26130" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26129" e_stop="26013" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="26012" i_stop="24565" i_length="1448"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24564" e_stop="24400" e_length="165"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.899">
            <gDNA_intron_boundary i_start="24399" i_stop="22660" i_length="1740"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22659" e_stop="22398" e_length="262"/>
          </exon>
          <intron i_serial="7" don_prob="0.979" acc_prob="0.938">
            <gDNA_intron_boundary i_start="22397" i_stop="21769" i_length="629"/>
          </intron>
          <exon e_serial="8" e_score="0.985">
            <gDNA_exon_boundary e_start="21768" e_stop="21317" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27833" stop="27468"/>
              <exon start="26615" stop="26580"/>
              <exon start="26445" stop="26367"/>
              <exon start="26268" stop="26214"/>
              <exon start="26129" stop="26069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27810" stop="27468"/>
              <exon start="26615" stop="26580"/>
              <exon start="26445" stop="26367"/>
              <exon start="26268" stop="26214"/>
              <exon start="26129" stop="26086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27809" stop="27468"/>
              <exon start="26615" stop="26580"/>
              <exon start="26445" stop="26367"/>
              <exon start="26268" stop="26214"/>
              <exon start="26129" stop="26013"/>
              <exon start="24564" stop="24539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27778" stop="27468"/>
              <exon start="26615" stop="26580"/>
              <exon start="26445" stop="26367"/>
              <exon start="26268" stop="26214"/>
              <exon start="26129" stop="26013"/>
              <exon start="24564" stop="24469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27593" stop="27468"/>
              <exon start="26615" stop="26580"/>
              <exon start="26445" stop="26367"/>
              <exon start="26268" stop="26214"/>
              <exon start="26129" stop="26013"/>
              <exon start="24564" stop="24400"/>
              <exon start="22659" stop="22409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26391" stop="26367"/>
              <exon start="26268" stop="26214"/>
              <exon start="26129" stop="26013"/>
              <exon start="24564" stop="24400"/>
              <exon start="22659" stop="22615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26232" stop="26214"/>
              <exon start="26129" stop="26013"/>
              <exon start="24564" stop="24400"/>
              <exon start="22659" stop="22398"/>
              <exon start="21768" stop="21497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26122" stop="26013"/>
              <exon start="24564" stop="24400"/>
              <exon start="22659" stop="22398"/>
              <exon start="21768" stop="21317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26122" stop="26013"/>
              <exon start="24564" stop="24400"/>
              <exon start="22659" stop="22398"/>
              <exon start="21768" stop="21650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26122" stop="26013"/>
              <exon start="24564" stop="24400"/>
              <exon start="22659" stop="22429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271216" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGGTGAAACAAAAAGGCATATCAGTGTAGACATGAGGAGTTAACAACCATTACACAAGAATTTCACTCATTTTCCTCCTCCAATTGCTACTGTCAATTCAAAAAAGCTTAGCTTGAGGGAACAGAAATGGTGTCGTACATGAGCTTGTTGCTGTACGGAGTGGGAGGAATAGTGGTCGCCGGGATGGCAATACTGGTCGCCTTTCAGGAAAAACTTGTATATGTTCCCGTCTTACCTGGACTCACTAAGGCATATCCAATTACTCCCGCTCGACTTCGACTCCTTTACGAAGATGTTTGGCTCAGATCTTCAGACGGTGTTCGTCTTCATGCTTGGTTCATCAAACTCTTCCCTGACTGCAGAG : GTCCTACTATCATCTTTTTTCAAGAGAATGCAGGAA : ATATTGCACATCGTCTTGAAATGGTTCGCATAATGTTACAACGTTTGCAATGCAATGTTTTTATGCTTTCTTATCGAGG : TTACGGAGCCAGTGATGGATACCCTTCTCAACATGGAATCACAAAGGATGCTCAG : GCTGCACTGGATCATTTAGTTCAGAGGACCGATATTGACACATCAAGAATAGTAGTCTTTGGAAGGTCACTTGGAGGAGCTGTTGGCACTGTTCTTACCAAAAACAATCCTGACAAG : GTAGCTGGGCTCATTTTGGAGAATACTTTCACCTCTATCCTGGATATGGCAGGAGTTCTCTTGCCATTCTTGAAGTGGGTCATTGGTGGCAGTGGCTCAAAGGGTTTCAAGCTTCTTAACTTTGTTGTTCGATCTCCATGGAATACCATTGATGTCATTGGTGAG : ATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAATGCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAAACTGTCCCAGAGAAGAAGGATGATGAATCAAAGAAGGATTCCGAACTGTCCTCTAAGCAAAATG : TATCTTCAGATTTCGCTGCAAGCTGAAATGTTGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGATATCAAGGGAATGGAAGTGCATCCTTTCAAATATTTATTCTTCTGATGATATTTTTTGGTGTCCTATTTTCAGAAGGTAAAAAGATGTGAAGGGTCTTGATTTATACTGCATCTCACTAACAATACTAGGGTGTCGAAATATAGGTCCAGCTGAGTTGTTTTGTATGAATAAGGATCCAAACGTAAAATGGCAACTCTCTACTAGAGAGTGATAACAGGCGGAAGACATTCTTTCGTGTGAATGGCTTACTCTTTATTTTGGTGTGATGCTTTTTCTTCCAAAGGGAGTTATAATTTGTGAACTTCCAATCTATGTATTCAAAAACTTTCCTA</gDNA_template>
            <first_frame> G  G  E  T  K  R  H  I  S  V  D  M  R  S  *  Q  P  L  H  K  N  F  T  H  F  P  P  P  I  A  T  V  N  S  K  K  L  S  L  R  E  Q  K  W  C  R  T  *  A  C  C  C  T  E  W  E  E  *  W  S  P  G  W  Q  Y  W  S  P  F  R  K  N  L  Y  M  F  P  S  Y  L  D  S  L  R  H  I  Q  L  L  P  L  D  F  D  S  F  T  K  M  F  G  S  D  L  Q  T  V  F  V  F  M  L  G  S  S  N  S  S  L  T  A  E  :  V  L  L  S  S  F  F  K  R  M  Q  E  :  I  L  H  I  V  L  K  W  F  A  *  C  Y  N  V  C  N  A  M  F  L  C  F  L  I  E   : V  T  E  P  V  M  D  T  L  L  N  M  E  S  Q  R  M  L  R :   L  H  W  I  I  *  F  R  G  P  I  L  T  H  Q  E  *  *  S  L  E  G  H  L  E  E  L  L  A  L  F  L  P  K  T  I  L  T  R :   *  L  G  S  F  W  R  I  L  S  P  L  S  W  I  W  Q  E  F  S  C  H  S  *  S  G  S  L  V  A  V  A  Q  R  V  S  S  F  L  T  L  L  F  D  L  H  G  I  P  L  M  S  L  V  R :   S  G  N  Q  S  S  S  Y  L  D  Y  K  M  R  W  F  H  H  S  T  C  R  C  C  M  Q  R  Q  R  H  V  T  G  N  A  Y  L  W  N  F  L  V  G  C  T  W  I  P  G  W  Q  V  V  I  I  I  G  G  Q  F  R  N  I  W  K  K  L  S  Q  R  R  R  M  M  N  Q  R  R  I  P  N  C  P  L  S  K  M  :  Y  L  Q  I  S  L  Q  A  E  M  L  S  F  R  Q  F  K  C  N  F  G  F  E  D  S  N  T  F  L  L  M  L  Q  *  *  R  A  V  C  D  I  K  G  M  E  V  H  P  F  K  Y  L  F  F  *  *  Y  F  L  V  S  Y  F  Q  K  V  K  R  C  E  G  S  *  F  I  L  H  L  T  N  N  T  R  V  S  K  Y  R  S  S  *  V  V  L  Y  E  *  G  S  K  R  K  M  A  T  L  Y  *  R  V  I  T  G  G  R  H  S  F  V  *  M  A  Y  S  L  F  W  C  D  A  F  S  S  K  G  S  Y  N  L  *  T  S  N  L  C  I  Q  K  L  S   </first_frame>
            <second_frame>  V  V  K  Q  K  G  I  S  V  *  T  *  G  V  N  N  H  Y  T  R  I  S  L  I  F  L  L  Q  L  L  L  S  I  Q  K  S  L  A  *  G  N  R  N  G  V  V  H  E  L  V  A  V  R  S  G  R  N  S  G  R  R  D  G  N  T  G  R  L  S  G  K  T  C  I  C  S  R  L  T  W  T  H  *  G  I  S  N  Y  S  R  S  T  S  T  P  L  R  R  C  L  A  Q  I  F  R  R  C  S  S  S  C  L  V  H  Q  T  L  P  *  L  Q  R :   S  Y  Y  H  L  F  S  R  E  C  R  K :   Y  C  T  S  S  *  N  G  S  H  N  V  T  T  F  A  M  Q  C  F  Y  A  F  L  S  R  :  L  R  S  Q  *  W  I  P  F  S  T  W  N  H  K  G  C  S   : G  C  T  G  S  F  S  S  E  D  R  Y  *  H  I  K  N  S  S  L  W  K  V  T  W  R  S  C  W  H  C  S  Y  Q  K  Q  S  *  Q   : G  S  W  A  H  F  G  E  Y  F  H  L  Y  P  G  Y  G  R  S  S  L  A  I  L  E  V  G  H  W  W  Q  W  L  K  G  F  Q  A  S  *  L  C  C  S  I  S  M  E  Y  H  *  C  H  W  *   : D  Q  A  T  N  P  L  P  I  W  I  T  R  *  D  G  S  T  I  P  H  A  D  A  V  C  K  G  S  G  T  *  Q  A  M  L  I  C  G  I  S  *  W  D  A  H  G  Y  L  V  G  R  W  *  S  L  L  E  D  N  S  E  I  F  G  R  N  C  P  R  E  E  G  *  *  I  K  E  G  F  R  T  V  L  *  A  K  C :   I  F  R  F  R  C  K  L  K  C  *  V  S  G  S  S  N  V  T  L  D  S  R  I  Q  I  H  F  F  *  C  C  S  D  E  E  Q  F  V  I  S  R  E  W  K  C  I  L  S  N  I  Y  S  S  D  D  I  F  W  C  P  I  F  R  R  *  K  D  V  K  G  L  D  L  Y  C  I  S  L  T  I  L  G  C  R  N  I  G  P  A  E  L  F  C  M  N  K  D  P  N  V  K  W  Q  L  S  T  R  E  *  *  Q  A  E  D  I  L  S  C  E  W  L  T  L  Y  F  G  V  M  L  F  L  P  K  G  V  I  I  C  E  L  P  I  Y  V  F  K  N  F  P  </second_frame>
            <third_frame>   W  *  N  K  K  A  Y  Q  C  R  H  E  E  L  T  T  I  T  Q  E  F  H  S  F  S  S  S  N  C  Y  C  Q  F  K  K  A  *  L  E  G  T  E  M  V  S  Y  M  S  L  L  L  Y  G  V  G  G  I  V  V  A  G  M  A  I  L  V  A  F  Q  E  K  L  V  Y  V  P  V  L  P  G  L  T  K  A  Y  P  I  T  P  A  R  L  R  L  L  Y  E  D  V  W  L  R  S  S  D  G  V  R  L  H  A  W  F  I  K  L  F  P  D  C  R   : G  P  T  I  I  F  F  Q  E  N  A  G   : N  I  A  H  R  L  E  M  V  R  I  M  L  Q  R  L  Q  C  N  V  F  M  L  S  Y  R  G :   Y  G  A  S  D  G  Y  P  S  Q  H  G  I  T  K  D  A  Q  :  A  A  L  D  H  L  V  Q  R  T  D  I  D  T  S  R  I  V  V  F  G  R  S  L  G  G  A  V  G  T  V  L  T  K  N  N  P  D  K  :  V  A  G  L  I  L  E  N  T  F  T  S  I  L  D  M  A  G  V  L  L  P  F  L  K  W  V  I  G  G  S  G  S  K  G  F  K  L  L  N  F  V  V  R  S  P  W  N  T  I  D  V  I  G  E  :  I  R  Q  P  I  L  F  L  S  G  L  Q  D  E  M  V  P  P  F  H  M  Q  M  L  Y  A  K  A  A  A  R  N  R  Q  C  L  F  V  E  F  P  S  G  M  H  M  D  T  W  L  A  G  G  D  H  Y  W  R  T  I  Q  K  Y  L  E  E  T  V  P  E  K  K  D  D  E  S  K  K  D  S  E  L  S  S  K  Q  N   : V  S  S  D  F  A  A  S  *  N  V  E  F  Q  A  V  Q  M  *  L  W  I  R  G  F  K  Y  I  S  F  D  V  A  V  M  K  S  S  L  *  Y  Q  G  N  G  S  A  S  F  Q  I  F  I  L  L  M  I  F  F  G  V  L  F  S  E  G  K  K  M  *  R  V  L  I  Y  T  A  S  H  *  Q  Y  *  G  V  E  I  *  V  Q  L  S  C  F  V  *  I  R  I  Q  T  *  N  G  N  S  L  L  E  S  D  N  R  R  K  T  F  F  R  V  N  G  L  L  F  I  L  V  *  C  F  F  F  Q  R  E  L  *  F  V  N  F  Q  S  M  Y  S  K  T  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27720" stop="27468"/>
                    <exon start="26615" stop="26580"/>
                    <exon start="26445" stop="26367"/>
                    <exon start="26268" stop="26214"/>
                    <exon start="26129" stop="26013"/>
                    <exon start="24564" stop="24400"/>
                    <exon start="22659" stop="22398"/>
                    <exon start="21768" stop="21743"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEGTEMVSYMSLLLYGVGGIVVAGMAILVAFQEKLVYVPVLPGLTKAYPITPARLRLLYEDVWLRSSDGVRLHAWFIKLFPDCRGPTIIFFQENAGNIAHRLEMVRIMLQRLQCNVFMLSYRGYGASDGYPSQHGITKDAQAALDHLVQRTDIDTSRIVVFGRSLGGAVGTVLTKNNPDKVAGLILENTFTSILDMAGVLLPFLKWVIGGSGSKGFKLLNFVVRSPWNTIDVIGEIRQPILFLSGLQDEMVPPFHMQMLYAKAAARNRQCLFVEFPSGMHMDTWLAGGDHYWRTIQKYLEETVPEKKDDESKKDSELSSKQNVSSDFAAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22315" e_stop="21631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22315" e_stop="21631" e_length="685"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22315" stop="21631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22315" stop="21765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAGAAAATATTTGTGAAAACACAGATGATAAATCTTCTTTGAAGGATATTGTTAGTTAGGGTTCTAGAGGCTGCAATCCTTCTATATACCTGGACAGTCGGCCCCTTTTAAACTGTCTCGAAAAAAAAATTGCTCTGTCGAAGACTGGGTCAAGTATGACTGATCCCTCTAGAAATCTGAAAGGAAGTCATGTCCTATTTTATCAGCCTAAGGAATAGTCCATTTTGTTATGTCTAAAATCTATTTTCAAAATTAACTCATAAAATAGTATTTGGAAAAGACATTTGAGAGTATGATATCCAACAGGTATCTAATAATTCATAGAACAGTAAATGCTATAAATTCTTTTGATTTAGCTCCTGTTATAGCTCCTTTCTGAGACTACAAGATTGTTAAAGTATTACCTTATCCTGCTACCTCATATATCCATTTATCTTCACTTTGTGGATCATTGTTTCTCACTGTGTTGAATTTGAAAGCTGATGAACTTCAATTCTTGTCTAGGCTAATCGTGGCTGTTTGGTTTGTGATAATATCATTTGCAGTATCTTCAGATTTCGCTGCAAGCTGAAATGTTGAGTTTCAGGCAGTTCAAATGTAACTTTGGATTCGAGGATTCAAATACATTTCTTTTGATGTTGCAGTGATGAAGAGCAGTTTGTGATATCAAGGGAATGGAAGTG</gDNA_template>
            <first_frame> L  R  K  Y  L  *  K  H  R  *  *  I  F  F  E  G  Y  C  *  L  G  F  *  R  L  Q  S  F  Y  I  P  G  Q  S  A  P  F  K  L  S  R  K  K  N  C  S  V  E  D  W  V  K  Y  D  *  S  L  *  K  S  E  R  K  S  C  P  I  L  S  A  *  G  I  V  H  F  V  M  S  K  I  Y  F  Q  N  *  L  I  K  *  Y  L  E  K  T  F  E  S  M  I  S  N  R  Y  L  I  I  H  R  T  V  N  A  I  N  S  F  D  L  A  P  V  I  A  P  F  *  D  Y  K  I  V  K  V  L  P  Y  P  A  T  S  Y  I  H  L  S  S  L  C  G  S  L  F  L  T  V  L  N  L  K  A  D  E  L  Q  F  L  S  R  L  I  V  A  V  W  F  V  I  I  S  F  A  V  S  S  D  F  A  A  S  *  N  V  E  F  Q  A  V  Q  M  *  L  W  I  R  G  F  K  Y  I  S  F  D  V  A  V  M  K  S  S  L  *  Y  Q  G  N  G  S  </first_frame>
            <second_frame>  *  E  N  I  C  E  N  T  D  D  K  S  S  L  K  D  I  V  S  *  G  S  R  G  C  N  P  S  I  Y  L  D  S  R  P  L  L  N  C  L  E  K  K  I  A  L  S  K  T  G  S  S  M  T  D  P  S  R  N  L  K  G  S  H  V  L  F  Y  Q  P  K  E  *  S  I  L  L  C  L  K  S  I  F  K  I  N  S  *  N  S  I  W  K  R  H  L  R  V  *  Y  P  T  G  I  *  *  F  I  E  Q  *  M  L  *  I  L  L  I  *  L  L  L  *  L  L  S  E  T  T  R  L  L  K  Y  Y  L  I  L  L  P  H  I  S  I  Y  L  H  F  V  D  H  C  F  S  L  C  *  I  *  K  L  M  N  F  N  S  C  L  G  *  S  W  L  F  G  L  *  *  Y  H  L  Q  Y  L  Q  I  S  L  Q  A  E  M  L  S  F  R  Q  F  K  C  N  F  G  F  E  D  S  N  T  F  L  L  M  L  Q  *  *  R  A  V  C  D  I  K  G  M  E  V </second_frame>
            <third_frame>   K  K  I  F  V  K  T  Q  M  I  N  L  L  *  R  I  L  L  V  R  V  L  E  A  A  I  L  L  Y  T  W  T  V  G  P  F  *  T  V  S  K  K  K  L  L  C  R  R  L  G  Q  V  *  L  I  P  L  E  I  *  K  E  V  M  S  Y  F  I  S  L  R  N  S  P  F  C  Y  V  *  N  L  F  S  K  L  T  H  K  I  V  F  G  K  D  I  *  E  Y  D  I  Q  Q  V  S  N  N  S  *  N  S  K  C  Y  K  F  F  *  F  S  S  C  Y  S  S  F  L  R  L  Q  D  C  *  S  I  T  L  S  C  Y  L  I  Y  P  F  I  F  T  L  W  I  I  V  S  H  C  V  E  F  E  S  *  *  T  S  I  L  V  *  A  N  R  G  C  L  V  C  D  N  I  I  C  S  I  F  R  F  R  C  K  L  K  C  *  V  S  G  S  S  N  V  T  L  D  S  R  I  Q  I  H  F  F  *  C  C  S  D  E  E  Q  F  V  I  S  R  E  W  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0111C06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22664" e_stop="22398"/>
            <exon e_start="21669" e_stop="21606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.998" e_score="0.951"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="22664" e_stop="22398" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22397" i_stop="21670" i_length="728"/>
          </intron>
          <exon e_serial="2" e_score="0.953">
            <gDNA_exon_boundary e_start="21669" e_stop="21606" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22664" stop="22398"/>
              <exon start="21669" stop="21606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAGATCAGGCAACCAATCCTCTTCCTATCTGGATTACAAGATGAGATGGTTCCACCATTCCACATGCAGATGCTGTATGCAAAGGCAGCGGCACGTAACAGGCAATGCTTATTTGTGGAATTTCCTAGTGGGATGCACATGGATACCTGGTTGGCAGGTGGTGATCATTATTGGAGGACAATTCAGAAATATTTGGAAGAAACTGTCCCAGAGAAGAAGGATGATGAATCAAAGAAGGATTCCGAACTGTCCTCTAAGCAAAATG : TGATGAAGAGCAGTTTGTGATATCAAGGGAATGGAAGTGCATCCTTTCAAATATTTATTCTTCT</gDNA_template>
            <first_frame> C  R  S  G  N  Q  S  S  S  Y  L  D  Y  K  M  R  W  F  H  H  S  T  C  R  C  C  M  Q  R  Q  R  H  V  T  G  N  A  Y  L  W  N  F  L  V  G  C  T  W  I  P  G  W  Q  V  V  I  I  I  G  G  Q  F  R  N  I  W  K  K  L  S  Q  R  R  R  M  M  N  Q  R  R  I  P  N  C  P  L  S  K  M  :  *  *  R  A  V  C  D  I  K  G  M  E  V  H  P  F  K  Y  L  F  F  </first_frame>
            <second_frame>  A  D  Q  A  T  N  P  L  P  I  W  I  T  R  *  D  G  S  T  I  P  H  A  D  A  V  C  K  G  S  G  T  *  Q  A  M  L  I  C  G  I  S  *  W  D  A  H  G  Y  L  V  G  R  W  *  S  L  L  E  D  N  S  E  I  F  G  R  N  C  P  R  E  E  G  *  *  I  K  E  G  F  R  T  V  L  *  A  K  C :   D  E  E  Q  F  V  I  S  R  E  W  K  C  I  L  S  N  I  Y  S  S </second_frame>
            <third_frame>   Q  I  R  Q  P  I  L  F  L  S  G  L  Q  D  E  M  V  P  P  F  H  M  Q  M  L  Y  A  K  A  A  A  R  N  R  Q  C  L  F  V  E  F  P  S  G  M  H  M  D  T  W  L  A  G  G  D  H  Y  W  R  T  I  Q  K  Y  L  E  E  T  V  P  E  K  K  D  D  E  S  K  K  D  S  E  L  S  S  K  Q  N   : V  M  K  S  S  L  *  Y  Q  G  N  G  S  A  S  F  Q  I  F  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22662" stop="22398"/>
                    <exon start="21669" stop="21650"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIRQPILFLSGLQDEMVPPFHMQMLYAKAAARNRQCLFVEFPSGMHMDTWLAGGDHYWRTIQKYLEETVPEKKDDESKKDSELSSKQNVMKSSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22664" stop="22398"/>
                    <exon start="21669" stop="21667"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRSGNQSSSYLDYKMRWFHHSTCRCCMQRQRHVTGNAYLWNFLVGCTWIPGWQVVIIIGGQFRNIWKKLSQRRRMMNQRRIPNCPLSKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="43392" PGL_stop="45479"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43392" e_stop="43417"/>
            <exon e_start="43517" e_stop="43615"/>
            <exon e_start="43698" e_stop="43919"/>
            <exon e_start="44919" e_stop="45058"/>
            <exon e_start="45421" e_stop="45479"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.687" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.651" e_score="0.982"/>
          <exon-intron don_prob="0.949" acc_prob="0.999" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43392" e_stop="43417" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.687">
            <gDNA_intron_boundary i_start="43418" i_stop="43516" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43517" e_stop="43615" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43616" i_stop="43697" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="43698" e_stop="43919" e_length="222"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.651">
            <gDNA_intron_boundary i_start="43920" i_stop="44918" i_length="999"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="44919" e_stop="45058" e_length="140"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45059" i_stop="45420" i_length="362"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45421" e_stop="45479" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43392" stop="43417"/>
              <exon start="43517" stop="43615"/>
              <exon start="43698" stop="43919"/>
              <exon start="44919" stop="45058"/>
              <exon start="45421" stop="45479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366212" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAGGAGCTTCGAAATCTCAAAATG : GCTGCAAGGGAAACAGGTGCTCTCAAGGAAGCCAAGGACAAGCTCGAAAAGAAAGTGGAAGAACTTACATGGCGGTTGCAATTTGAGAAACGACTCAGG : GCTGAGTTGGAGGAGACTAAAGCCCAAGAAGTTGGAAAGCTACAGGAGGCACTGCATGCAATGCAAAAGCAAGTAGAAGAAGCAAATGCTAAAGTGGTCCAAGAGCGGGAGGCAGCACGGAGAGCAATTGAAGAGGCACCTCCAGTCATCAAGGAGACCCCAGTTATAGTTCAAGACACAGAAAAAATAAATACCCTGTCAGCTGAAGTAGAGAATTTGAAG : GCTTTGCTGGCATCCGAAAAGAAAGCTACAGAAGAGGCTAGAGATTCTTCCAGGGATGCAGAGGCCAAACACACAGAGCTGGCTAGCAAACTAGAAACTGCCGAGCGAAAAGTAGATCAGCTTCAAGATTCTGTGCAGAG : GCTTGAAGAGAAGCTTTCCAATATGGAATCAGAGAACCAAGTGCTTCGTCAACAAGCTT</gDNA_template>
            <first_frame> G  R  S  F  E  I  S  K  W :   L  Q  G  K  Q  V  L  S  R  K  P  R  T  S  S  K  R  K  W  K  N  L  H  G  G  C  N  L  R  N  D  S  G :   L  S  W  R  R  L  K  P  K  K  L  E  S  Y  R  R  H  C  M  Q  C  K  S  K  *  K  K  Q  M  L  K  W  S  K  S  G  R  Q  H  G  E  Q  L  K  R  H  L  Q  S  S  R  R  P  Q  L  *  F  K  T  Q  K  K  *  I  P  C  Q  L  K  *  R  I  *  R :   L  C  W  H  P  K  R  K  L  Q  K  R  L  E  I  L  P  G  M  Q  R  P  N  T  Q  S  W  L  A  N  *  K  L  P  S  E  K  *  I  S  F  K  I  L  C  R   : G  L  K  R  S  F  P  I  W  N  Q  R  T  K  C  F  V  N  K  L </first_frame>
            <second_frame>  E  G  A  S  K  S  Q  N   : G  C  K  G  N  R  C  S  Q  G  S  Q  G  Q  A  R  K  E  S  G  R  T  Y  M  A  V  A  I  *  E  T  T  Q   : G  *  V  G  G  D  *  S  P  R  S  W  K  A  T  G  G  T  A  C  N  A  K  A  S  R  R  S  K  C  *  S  G  P  R  A  G  G  S  T  E  S  N  *  R  G  T  S  S  H  Q  G  D  P  S  Y  S  S  R  H  R  K  N  K  Y  P  V  S  *  S  R  E  F  E   : G  F  A  G  I  R  K  E  S  Y  R  R  G  *  R  F  F  Q  G  C  R  G  Q  T  H  R  A  G  *  Q  T  R  N  C  R  A  K  S  R  S  A  S  R  F  C  A  E  :  A  *  R  E  A  F  Q  Y  G  I  R  E  P  S  A  S  S  T  S   </second_frame>
            <third_frame>   K  E  L  R  N  L  K  M  :  A  A  R  E  T  G  A  L  K  E  A  K  D  K  L  E  K  K  V  E  E  L  T  W  R  L  Q  F  E  K  R  L  R  :  A  E  L  E  E  T  K  A  Q  E  V  G  K  L  Q  E  A  L  H  A  M  Q  K  Q  V  E  E  A  N  A  K  V  V  Q  E  R  E  A  A  R  R  A  I  E  E  A  P  P  V  I  K  E  T  P  V  I  V  Q  D  T  E  K  I  N  T  L  S  A  E  V  E  N  L  K  :  A  L  L  A  S  E  K  K  A  T  E  E  A  R  D  S  S  R  D  A  E  A  K  H  T  E  L  A  S  K  L  E  T  A  E  R  K  V  D  Q  L  Q  D  S  V  Q  R :   L  E  E  K  L  S  N  M  E  S  E  N  Q  V  L  R  Q  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43394" stop="43417"/>
                    <exon start="43517" stop="43615"/>
                    <exon start="43698" stop="43919"/>
                    <exon start="44919" stop="45058"/>
                    <exon start="45421" stop="45478"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KELRNLKMAARETGALKEAKDKLEKKVEELTWRLQFEKRLRAELEETKAQEVGKLQEALHAMQKQVEEANAKVVQEREAARRAIEEAPPVIKETPVIVQDTEKINTLSAEVENLKALLASEKKATEEARDSSRDAEAKHTELASKLETAERKVDQLQDSVQRLEEKLSNMESENQVLRQQA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="46376" PGL_stop="48809"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46376" e_stop="46420"/>
            <exon e_start="46531" e_stop="46737"/>
            <exon e_start="47319" e_stop="47456"/>
            <exon e_start="47544" e_stop="47614"/>
            <exon e_start="47707" e_stop="47806"/>
            <exon e_start="47880" e_stop="47936"/>
            <exon e_start="48025" e_stop="48081"/>
            <exon e_start="48233" e_stop="48313"/>
            <exon e_start="48442" e_stop="48524"/>
            <exon e_start="48622" e_stop="48809"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.892" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.426" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.647" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46376" e_stop="46420" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.892" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46421" i_stop="46530" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46531" e_stop="46737" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.974">
            <gDNA_intron_boundary i_start="46738" i_stop="47318" i_length="581"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47319" e_stop="47456" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.915" acc_prob="0.751">
            <gDNA_intron_boundary i_start="47457" i_stop="47543" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47544" e_stop="47614" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.849" acc_prob="0.426">
            <gDNA_intron_boundary i_start="47615" i_stop="47706" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47707" e_stop="47806" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47807" i_stop="47879" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47880" e_stop="47936" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.647" acc_prob="0.994">
            <gDNA_intron_boundary i_start="47937" i_stop="48024" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="48025" e_stop="48081" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.957" acc_prob="0.950">
            <gDNA_intron_boundary i_start="48082" i_stop="48232" i_length="151"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="48233" e_stop="48313" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.932" acc_prob="0.988">
            <gDNA_intron_boundary i_start="48314" i_stop="48441" i_length="128"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="48442" e_stop="48524" e_length="83"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.928">
            <gDNA_intron_boundary i_start="48525" i_stop="48621" i_length="97"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="48622" e_stop="48809" e_length="188"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46376" stop="46420"/>
              <exon start="46531" stop="46737"/>
              <exon start="47319" stop="47456"/>
              <exon start="47544" stop="47614"/>
              <exon start="47707" stop="47806"/>
              <exon start="47880" stop="47936"/>
              <exon start="48025" stop="48081"/>
              <exon start="48233" stop="48313"/>
              <exon start="48442" stop="48466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46380" stop="46420"/>
              <exon start="46531" stop="46737"/>
              <exon start="47319" stop="47456"/>
              <exon start="47544" stop="47614"/>
              <exon start="47707" stop="47791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46657" stop="46737"/>
              <exon start="47319" stop="47456"/>
              <exon start="47544" stop="47614"/>
              <exon start="47707" stop="47806"/>
              <exon start="47880" stop="47936"/>
              <exon start="48025" stop="48081"/>
              <exon start="48233" stop="48242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46685" stop="46737"/>
              <exon start="47319" stop="47456"/>
              <exon start="47544" stop="47614"/>
              <exon start="47707" stop="47806"/>
              <exon start="47880" stop="47936"/>
              <exon start="48025" stop="48081"/>
              <exon start="48233" stop="48240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47354" stop="47456"/>
              <exon start="47544" stop="47614"/>
              <exon start="47707" stop="47806"/>
              <exon start="47880" stop="47936"/>
              <exon start="48025" stop="48081"/>
              <exon start="48233" stop="48248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47730" stop="47806"/>
              <exon start="47880" stop="47936"/>
              <exon start="48025" stop="48081"/>
              <exon start="48233" stop="48313"/>
              <exon start="48442" stop="48524"/>
              <exon start="48622" stop="48683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47887" stop="47936"/>
              <exon start="48025" stop="48081"/>
              <exon start="48233" stop="48313"/>
              <exon start="48442" stop="48524"/>
              <exon start="48622" stop="48809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47902" stop="47936"/>
              <exon start="48025" stop="48081"/>
              <exon start="48233" stop="48313"/>
              <exon start="48442" stop="48524"/>
              <exon start="48622" stop="48764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCGGAGATCCAGTTCAGCCTCTTTGTTTGGAAGGATGTCCCAA : GGCTTGCGAGGTTCTCCTCAGAGTGCTGGGCTTTCAGTTCTCAATGGGCGTATGCTTGGGAGATTGGATGACTTACGTCATGTTGAGGCCAAGTATCCTGCGCTGCTGTTCAAGCAGCAGCTGACTGCCTTTTTGGAGAAAATATATGGAATGATAAGAGACAATCTGAAGAAAGAGATATCCCCATTGCTTGGGCTATGTATTCAG : GCACCAAGAACATCTCGTGCAAGTTTAGTCAAAGGAAGATCCCAAGCTAATGCTGCTGCCCAGCAAGCTCTATTTGCTCATTGGCAAAGCATTGTAAAAAGTTTGAATAACTACTTGATGATGATGAAATCAAACCAT : GTTCCTCCCTTCTTAGTTCGGAAGGTTTTCACTCAAATATTTTCCTTTATCAATGTTCAACTTTTCAACAG : TCTTCTTTTGCGGCGTGAGTGTTGCTCATTTAGTAATGGAGAATTTGTGAAAGCCGGGTTGGCTGAATTGGAACAGTGGTGCTGCTATGCAACTGAAGAA : TTTGTAGGCTCAGCATGGGACGAGTTGAAACACATTAGACAGGCAGTTGGATTCCTA : GTTATCCATCAAAAGCCCAAAAAGTCATTGAATGAAATCACTAATGAACTTTGTCCA : GTGCTTAGCATACAGCAACTGTATAGGATCAGCACTATGTACTGGGATGACAAATACGGAACCCACACTGTCTCTTCAGAT : GTTATTTCAAGTATGAGAGTTATGATGACAGAGGACTCCAACAATGCTGTCAGCAGTTCCTTTTTGTTGGATGATGATTCGAG : CATTCCATTCTCCGTGGATGACATCTCCAAAACGATGCAACAAATAGACATTGGTGATGTTGAACCTCCTCCATTAATCCGTGAGAATTCAGGATTTGTATTCTTGCATCAACGGTCTAGTTGATGGTGGTTCTAAATATACAATTCAACATGTTTGCATAGCTCCAGAGAGCTGACGCTCGTGCACA</gDNA_template>
            <first_frame> R  R  R  S  S  S  A  S  L  F  G  R  M  S  Q  :  G  L  R  G  S  P  Q  S  A  G  L  S  V  L  N  G  R  M  L  G  R  L  D  D  L  R  H  V  E  A  K  Y  P  A  L  L  F  K  Q  Q  L  T  A  F  L  E  K  I  Y  G  M  I  R  D  N  L  K  K  E  I  S  P  L  L  G  L  C  I  Q  :  A  P  R  T  S  R  A  S  L  V  K  G  R  S  Q  A  N  A  A  A  Q  Q  A  L  F  A  H  W  Q  S  I  V  K  S  L  N  N  Y  L  M  M  M  K  S  N  H  :  V  P  P  F  L  V  R  K  V  F  T  Q  I  F  S  F  I  N  V  Q  L  F  N  S :   L  L  L  R  R  E  C  C  S  F  S  N  G  E  F  V  K  A  G  L  A  E  L  E  Q  W  C  C  Y  A  T  E  E  :  F  V  G  S  A  W  D  E  L  K  H  I  R  Q  A  V  G  F  L  :  V  I  H  Q  K  P  K  K  S  L  N  E  I  T  N  E  L  C  P  :  V  L  S  I  Q  Q  L  Y  R  I  S  T  M  Y  W  D  D  K  Y  G  T  H  T  V  S  S  D  :  V  I  S  S  M  R  V  M  M  T  E  D  S  N  N  A  V  S  S  S  F  L  L  D  D  D  S  S :   I  P  F  S  V  D  D  I  S  K  T  M  Q  Q  I  D  I  G  D  V  E  P  P  P  L  I  R  E  N  S  G  F  V  F  L  H  Q  R  S  S  *  W  W  F  *  I  Y  N  S  T  C  L  H  S  S  R  E  L  T  L  V  H  </first_frame>
            <second_frame>  G  G  D  P  V  Q  P  L  C  L  E  G  C  P  K :   A  C  E  V  L  L  R  V  L  G  F  Q  F  S  M  G  V  C  L  G  D  W  M  T  Y  V  M  L  R  P  S  I  L  R  C  C  S  S  S  S  *  L  P  F  W  R  K  Y  M  E  *  *  E  T  I  *  R  K  R  Y  P  H  C  L  G  Y  V  F  R :   H  Q  E  H  L  V  Q  V  *  S  K  E  D  P  K  L  M  L  L  P  S  K  L  Y  L  L  I  G  K  A  L  *  K  V  *  I  T  T  *  *  *  *  N  Q  T  M :   F  L  P  S  *  F  G  R  F  S  L  K  Y  F  P  L  S  M  F  N  F  S  T   : V  F  F  C  G  V  S  V  A  H  L  V  M  E  N  L  *  K  P  G  W  L  N  W  N  S  G  A  A  M  Q  L  K  N :   L  *  A  Q  H  G  T  S  *  N  T  L  D  R  Q  L  D  S  * :   L  S  I  K  S  P  K  S  H  *  M  K  S  L  M  N  F  V  Q :   C  L  A  Y  S  N  C  I  G  S  A  L  C  T  G  M  T  N  T  E  P  T  L  S  L  Q  M :   L  F  Q  V  *  E  L  *  *  Q  R  T  P  T  M  L  S  A  V  P  F  C  W  M  M  I  R   : A  F  H  S  P  W  M  T  S  P  K  R  C  N  K  *  T  L  V  M  L  N  L  L  H  *  S  V  R  I  Q  D  L  Y  S  C  I  N  G  L  V  D  G  G  S  K  Y  T  I  Q  H  V  C  I  A  P  E  S  *  R  S  C  T </second_frame>
            <third_frame>   A  E  I  Q  F  S  L  F  V  W  K  D  V  P   : R  L  A  R  F  S  S  E  C  W  A  F  S  S  Q  W  A  Y  A  W  E  I  G  *  L  T  S  C  *  G  Q  V  S  C  A  A  V  Q  A  A  A  D  C  L  F  G  E  N  I  W  N  D  K  R  Q  S  E  E  R  D  I  P  I  A  W  A  M  Y  S   : G  T  K  N  I  S  C  K  F  S  Q  R  K  I  P  S  *  C  C  C  P  A  S  S  I  C  S  L  A  K  H  C  K  K  F  E  *  L  L  D  D  D  E  I  K  P   : C  S  S  L  L  S  S  E  G  F  H  S  N  I  F  L  Y  Q  C  S  T  F  Q  Q  :  S  S  F  A  A  *  V  L  L  I  *  *  W  R  I  C  E  S  R  V  G  *  I  G  T  V  V  L  L  C  N  *  R   : I  C  R  L  S  M  G  R  V  E  T  H  *  T  G  S  W  I  P   : S  Y  P  S  K  A  Q  K  V  I  E  *  N  H  *  *  T  L  S   : S  A  *  H  T  A  T  V  *  D  Q  H  Y  V  L  G  *  Q  I  R  N  P  H  C  L  F  R   : C  Y  F  K  Y  E  S  Y  D  D  R  G  L  Q  Q  C  C  Q  Q  F  L  F  V  G  *  *  F  E  :  H  S  I  L  R  G  *  H  L  Q  N  D  A  T  N  R  H  W  *  C  *  T  S  S  I  N  P  *  E  F  R  I  C  I  L  A  S  T  V  *  L  M  V  V  L  N  I  Q  F  N  M  F  A  *  L  Q  R  A  D  A  R  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46376" stop="46420"/>
                    <exon start="46531" stop="46737"/>
                    <exon start="47319" stop="47456"/>
                    <exon start="47544" stop="47614"/>
                    <exon start="47707" stop="47806"/>
                    <exon start="47880" stop="47936"/>
                    <exon start="48025" stop="48081"/>
                    <exon start="48233" stop="48313"/>
                    <exon start="48442" stop="48524"/>
                    <exon start="48622" stop="48745"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRSSSASLFGRMSQGLRGSPQSAGLSVLNGRMLGRLDDLRHVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGRSQANAAAQQALFAHWQSIVKSLNNYLMMMKSNHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCCYATEEFVGSAWDELKHIRQAVGFLVIHQKPKKSLNEITNELCPVLSIQQLYRISTMYWDDKYGTHTVSSDVISSMRVMMTEDSNNAVSSSFLLDDDSSIPFSVDDISKTMQQIDIGDVEPPPLIRENSGFVFLHQRSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="48901" PGL_stop="52370"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48901" e_stop="49389"/>
            <exon e_start="49480" e_stop="49485"/>
            <exon e_start="49817" e_stop="49831"/>
            <exon e_start="52282" e_stop="52370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.935" e_score="0.969"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.667"/>
          <exon-intron don_prob="0.390" acc_prob="0.000" e_score="0.800"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="48901" e_stop="49389" e_length="489"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.935">
            <gDNA_intron_boundary i_start="49390" i_stop="49479" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="49480" e_stop="49485" e_length="6"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49486" i_stop="49816" i_length="331"/>
          </intron>
          <exon e_serial="3" e_score="0.800">
            <gDNA_exon_boundary e_start="49817" e_stop="49831" e_length="15"/>
          </exon>
          <intron i_serial="3" don_prob="0.390" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49832" i_stop="52281" i_length="2450"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52282" e_stop="52370" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48901" stop="49389"/>
              <exon start="49480" stop="49485"/>
              <exon start="49817" stop="49831"/>
              <exon start="52282" stop="52370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTTGTTGTCCGGTTCAATTTATTCTTTTTTCCTCTCCTGCTCAACTTGGGAGGTATTTTTATTTATGCCAAAAGGCTTTTAGTGTGGTCATATGCAGGTAGGTATAGGCAGATGCATTGGTTTTTGTTGCTTGCCTTTATTATTTTGTCTTTGTCAGAGTTGTAAAGTCTCTAAAGTTGTCAATTTTAGGTCCTTATTTGCTGTAGTGTGTAGGTGAAGTGCAGTTATGTGTAATAGAAGTGTTAAATTATTAAGGAAAAAAGGGTTGTGAGTCTTTTCTTCCCATTAGTGACTGATCAAACTGCATAAAGAATCAGTGGTATGGACCTAACTTTGTATCACCTCCATTGAAGTATGAGGAGGCGGACAAATAAGAGCATAGCTAGAAGTGCGAAAGGAGTTAATTTCACAATTATACATGGTTTACTCATAATACGCAGTATAGATGATTTTGAGAATCAAATTATGATAGTAGTAGTCAGTCGAT : CAGGTT : GTCGTCTTGAAAAAA : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA</gDNA_template>
            <first_frame> C  L  L  S  G  S  I  Y  S  F  F  L  S  C  S  T  W  E  V  F  L  F  M  P  K  G  F  *  C  G  H  M  Q  V  G  I  G  R  C  I  G  F  C  C  L  P  L  L  F  C  L  C  Q  S  C  K  V  S  K  V  V  N  F  R  S  L  F  A  V  V  C  R  *  S  A  V  M  C  N  R  S  V  K  L  L  R  K  K  G  L  *  V  F  S  S  H  *  *  L  I  K  L  H  K  E  S  V  V  W  T  *  L  C  I  T  S  I  E  V  *  G  G  G  Q  I  R  A  *  L  E  V  R  K  E  L  I  S  Q  L  Y  M  V  Y  S  *  Y  A  V  *  M  I  L  R  I  K  L  *  *  *  *  S  V  D  :  Q  V  :  V  V  L  K  K  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L   </first_frame>
            <second_frame>  V  C  C  P  V  Q  F  I  L  F  S  S  P  A  Q  L  G  R  Y  F  Y  L  C  Q  K  A  F  S  V  V  I  C  R  *  V  *  A  D  A  L  V  F  V  A  C  L  Y  Y  F  V  F  V  R  V  V  K  S  L  K  L  S  I  L  G  P  Y  L  L  *  C  V  G  E  V  Q  L  C  V  I  E  V  L  N  Y  *  G  K  K  G  C  E  S  F  L  P  I  S  D  *  S  N  C  I  K  N  Q  W  Y  G  P  N  F  V  S  P  P  L  K  Y  E  E  A  D  K  *  E  H  S  *  K  C  E  R  S  *  F  H  N  Y  T  W  F  T  H  N  T  Q  Y  R  *  F  *  E  S  N  Y  D  S  S  S  Q  S  I :   R  L :   S  S  *  K  N :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  </second_frame>
            <third_frame>   F  V  V  R  F  N  L  F  F  F  P  L  L  L  N  L  G  G  I  F  I  Y  A  K  R  L  L  V  W  S  Y  A  G  R  Y  R  Q  M  H  W  F  L  L  L  A  F  I  I  L  S  L  S  E  L  *  S  L  *  S  C  Q  F  *  V  L  I  C  C  S  V  *  V  K  C  S  Y  V  *  *  K  C  *  I  I  K  E  K  R  V  V  S  L  F  F  P  L  V  T  D  Q  T  A  *  R  I  S  G  M  D  L  T  L  Y  H  L  H  *  S  M  R  R  R  T  N  K  S  I  A  R  S  A  K  G  V  N  F  T  I  I  H  G  L  L  I  I  R  S  I  D  D  F  E  N  Q  I  M  I  V  V  V  S  R   : S  G   : C  R  L  E  K   : I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49254" stop="49389"/>
                    <exon start="49480" stop="49485"/>
                    <exon start="49817" stop="49831"/>
                    <exon start="52282" stop="52370"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMRRRTNKSIARSAKGVNFTIIHGLLIIRSIDDFENQIMIVVVSRSGCRLEKIFFFFFFFFFFFFFFFFFFFFFFFFFFFFK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="73102" PGL_stop="73979"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73102" e_stop="73652"/>
            <exon e_start="73761" e_stop="73979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="73102" e_stop="73652" e_length="551"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73653" i_stop="73760" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="73761" e_stop="73979" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73102" stop="73652"/>
              <exon start="73761" stop="73979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTACTATTGATAACACAGCGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTACATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCAATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGCTGTGAGAGAACGCAATGTCATCCCAAGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTCCAAAAG : TTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCTCAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTAGATGATTTCTCCACAAGACCGCCAGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAAAGAAGAAAAAA</gDNA_template>
            <first_frame> N  L  V  *  M  I  L  H  Y  *  Q  D  L  R  S  E  E  I  P  M  I  S  N  T  Q  N  K  L  I  V  C  F  L  K  S  I  S  L  V  Q  S  I  V  L  Q  S  I  N  *  F  K  G  L  R  W  V  I  G  R  A  I  R  M  H  S  K  C  L  Y  C  S  L  F  I  H  L  Y  *  L  L  L  I  T  Q  R  Y  L  L  S  T  F  *  W  L  K  M  V  H  I  N  I  F  L  G  V  S  Y  H  F  P  N  *  L  V  H  L  D  R  I  L  T  L  V  K  S  C  T  N  Y  M  G  C  H  M  H  *  M  F  G  Y  T  N  V  H  P  I  *  I  Q  K  *  L  *  E  N  A  M  S  S  Q  E  Y  A  I  G  E  L  C  L  K  R  Q  S  L  K  C  L  C  P  P  F  S  K  S :   *  N  A  C  S  N  I  V  P  T  A  E  E  I  E  A  F  D  I  A  Q  V  E  H  A  H  S  T  S  I  P  L  V  Q  P  N  E  Q  D  D  L  D  D  F  S  T  R  P  P  E  Q  L  L  R  T  Y  S  R  V  S  D  T  S  P  P  P  P  P  K  R  R  K   </first_frame>
            <second_frame>  I  W  Y  R  *  F  C  I  I  N  R  T  *  G  Q  R  K  Y  Q  *  F  Q  I  P  R  T  N  *  L  Y  A  F  *  K  V  F  P  W  C  S  Q  *  C  Y  K  A  S  T  S  S  K  V  *  D  G  *  L  G  E  Q  S  G  C  T  P  N  V  Y  T  V  L  Y  S  Y  I  C  I  S  Y  Y  *  *  H  S  D  I  Y  C  R  L  S  N  G  *  R  W  Y  I  S  T  F  S  L  G  S  A  I  I  F  Q  T  N  W  F  T  *  T  G  F  *  R  *  *  K  V  V  P  I  I  W  D  A  I  C  T  K  C  L  D  I  R  M  C  I  Q  F  K  F  R  N  S  C  E  R  T  Q  C  H  P  K  N  M  Q  L  E  S  C  V  *  K  G  K  V  *  N  A  Y  V  H  H  F  P  K   : V  R  M  H  V  Q  T  L  S  Q  Q  Q  R  K  L  K  L  L  I  L  L  K  L  N  M  L  I  L  H  Q  Y  H  *  Y  N  Q  T  S  K  M  I  *  M  I  S  P  Q  D  R  Q  N  S  Y  *  G  H  I  L  E  C  L  I  H  L  L  H  H  R  Q  K  E  E  K  </second_frame>
            <third_frame>   F  G  I  D  D  F  A  L  L  T  G  L  K  V  R  G  N  T  N  D  F  K  Y  P  E  Q  T  N  C  M  L  F  K  K  Y  F  P  G  A  V  N  S  V  T  K  H  Q  L  V  Q  R  F  K  M  G  N  W  E  S  N  Q  D  A  L  Q  M  S  I  L  F  F  I  H  T  F  V  L  A  T  I  D  N  T  A  I  S  I  V  D  F  L  M  V  E  D  G  T  Y  Q  H  F  P  W  G  Q  L  S  F  S  K  L  I  G  S  L  R  Q  D  F  D  V  S  K  K  L  Y  Q  L  Y  G  M  P  Y  A  L  N  V  W  I  Y  E  C  A  S  N  L  N  S  E  I  A  V  R  E  R  N  V  I  P  R  I  C  N  W  R  V  V  S  E  K  A  K  F  E  M  L  M  S  T  I  F  Q  K  :  L  E  C  M  F  K  H  C  P  N  S  R  G  N  *  S  F  *  Y  C  S  S  *  T  C  S  F  Y  I  N  T  I  S  T  T  K  R  A  R  *  F  R  *  F  L  H  K  T  A  R  T  V  I  E  D  I  F  *  S  V  *  Y  I  S  S  T  T  A  K  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73104" stop="73652"/>
                    <exon start="73761" stop="73805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGIDDFALLTGLKVRGNTNDFKYPEQTNCMLFKKYFPGAVNSVTKHQLVQRFKMGNWESNQDALQMSILFFIHTFVLATIDNTAISIVDFLMVEDGTYQHFPWGQLSFSKLIGSLRQDFDVSKKLYQLYGMPYALNVWIYECASNLNSEIAVRERNVIPRICNWRVVSEKAKFEMLMSTIFQKLECMFKHCPNSRGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="74364" PGL_stop="75271"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74364" e_stop="74644"/>
            <exon e_start="74847" e_stop="74969"/>
            <exon e_start="75053" e_stop="75271"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="0.957"/>
          <exon-intron don_prob="0.992" acc_prob="0.991" e_score="0.976"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="74364" e_stop="74644" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="74645" i_stop="74846" i_length="202"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="74847" e_stop="74969" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.991">
            <gDNA_intron_boundary i_start="74970" i_stop="75052" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="75053" e_stop="75271" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74364" stop="74644"/>
              <exon start="74847" stop="74969"/>
              <exon start="75053" stop="75271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGATGAGCATCATATCGTCGATGATGCAGGGGATGTCAATGTAGATGGTGTTGGTGTTGCCATAAATGAGGGTGAACCAATAGTCAGTGATCCAAAG : GATGGTGACGCACATCAGTCGCACCAAGACTTAAATGAACATATCATGGACCAAGCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAACGGATTCATCG : GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGATGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGATCGACAATCAATTACCCACTGAAATTCCAATAACGGAGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</gDNA_template>
            <first_frame> N  *  L  F  *  *  K  Q  I  T  P  S  *  C  N  L  L  A  K  R  T  S  I  F  R  L  I  Q  A  H  F  S  L  T  N  K  H  L  S  K  Y  R  L  I  S  M  I  W  V  V  *  L  R  M  V  V  V  F  L  V  K  M  M  S  I  I  S  S  M  M  Q  G  M  S  M  *  M  V  L  V  L  P  *  M  R  V  N  Q  *  S  V  I  Q  R :   M  V  T  H  I  S  R  T  K  T  *  M  N  I  S  W  T  K  P  L  T  T  M  F  I  T  T  S  L  M  C  C  P  K  K  Q  Q  R  I  H  R :   I  L  Q  L  Q  Q  Q  Y  R  H  Q  L  K  Q  Q  *  M  R  L  S  K  I  W  V  K  M  L  P  M  L  D  H  Y  I  L  T  I  Q  R  I  *  L  A  A  S  T  C  *  S  T  I  N  Y  P  L  K  F  Q  *  R  R  L  L  L  K  L  M  Q  S  L  L  R   </first_frame>
            <second_frame>  I  D  Y  F  D  K  S  K  S  L  P  A  D  A  I  Y  *  Q  R  E  H  Q  F  S  G  *  Y  K  H  I  S  V  *  Q  T  N  I  S  A  N  T  G  *  S  R  *  Y  G  W  C  S  *  G  W  W  W  F  F  W  *  K  *  *  A  S  Y  R  R  *  C  R  G  C  Q  C  R  W  C  W  C  C  H  K  *  G  *  T  N  S  Q  *  S  K   : G  W  *  R  T  S  V  A  P  R  L  K  *  T  Y  H  G  P  S  R  *  R  Q  C  S  S  Q  H  P  S  C  V  A  R  K  N  N  N  G  F  I   : G  F  F  N  F  N  N  N  I  A  I  N  S  S  S  N  R  C  A  Y  Q  R  F  G  *  R  C  Y  Q  C  *  T  I  I  F  L  R  S  K  E  Y  N  *  Q  P  V  L  V  D  R  Q  S  I  T  H  *  N  S  N  N  G  D  C  C  *  N  *  C  S  H  S  C  A  </second_frame>
            <third_frame>   L  I  I  L  I  K  A  N  H  S  Q  L  M  Q  S  I  S  K  E  N  I  N  F  Q  A  D  T  S  T  F  Q  S  D  K  Q  T  S  Q  Q  I  P  V  D  L  D  D  M  G  G  V  A  E  D  G  G  G  F  S  G  K  N  D  E  H  H  I  V  D  D  A  G  D  V  N  V  D  G  V  G  V  A  I  N  E  G  E  P  I  V  S  D  P  K  :  D  G  D  A  H  Q  S  H  Q  D  L  N  E  H  I  M  D  Q  A  V  D  D  N  V  H  H  N  I  P  H  V  L  P  E  K  T  T  T  D  S  S  :  D  S  S  T  S  T  T  I  S  P  S  T  Q  A  A  I  D  A  L  I  K  D  L  G  K  D  A  T  N  A  R  P  L  Y  S  Y  D  P  K  N  I  T  S  S  Q  Y  L  L  I  D  N  Q  L  P  T  E  I  P  I  T  E  I  A  V  K  T  D  A  V  T  P  A  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74366" stop="74644"/>
                    <exon start="74847" stop="74969"/>
                    <exon start="75053" stop="75271"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIILIKANHSQLMQSISKENINFQADTSTFQSDKQTSQQIPVDLDDMGGVAEDGGGFSGKNDEHHIVDDAGDVNVDGVGVAINEGEPIVSDPKDGDAHQSHQDLNEHIMDQAVDDNVHHNIPHVLPEKTTTDSSDSSTSTTISPSTQAAIDALIKDLGKDATNARPLYSYDPKNITSSQYLLIDNQLPTEIPITEIAVKTDAVTPAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="78270" PGL_stop="77752"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78270" e_stop="77752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="78270" e_stop="77752" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78270" stop="77752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGAGCGGAAAGTATGTTGTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATAGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGATGCCAATGCCAGATAAGAAAGATTGGTCAGATCTTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGATCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTTGTCGTAATGTTTCTATGATATAAAGAATAATTTATCACGTAAACATTTAAATGAATTTCAGTTTTAATTACGACTGCAAATTGAAAACTTTGTGTTTAGATAAATAAACGTACAAACATGTTGTAATTACATTTGAA</gDNA_template>
            <first_frame> L  E  R  K  V  C  C  C  G  R  F  Q  L  D  E  I  P  C  S  H  A  I  A  V  L  K  K  K  N  V  T  D  M  N  P  Y  C  S  D  Y  Y  K  P  D  A  L  A  K  T  Y  E  I  P  M  M  P  M  P  D  K  K  D  W  S  D  L  K  H  V  V  A  E  T  V  Y  P  P  R  Y  R  R  S  S  G  R  S  R  K  R  R  R  K  N  A  D  E  K  I  S  V  N  T  N  C  C  G  Q  C  G  Q  E  G  H  N  R  R  T  C  T  F  Y  P  K  E  K  *  I  C  R  N  V  S  M  I  *  R  I  I  Y  H  V  N  I  *  M  N  F  S  F  N  Y  D  C  K  L  K  T  L  C  L  D  K  *  T  Y  K  H  V  V  I  T  F  E </first_frame>
            <second_frame>  L  S  G  K  Y  V  V  V  V  D  F  N  *  M  R  Y  L  V  H  M  Q  *  L  Y  *  K  K  R  M  S  P  I  *  I  R  I  A  L  I  I  T  S  L  M  R  W  Q  K  H  M  K  F  Q  *  C  Q  C  Q  I  R  K  I  G  Q  I  L  N  T  W  *  L  K  L  C  I  H  L  D  T  E  D  H  L  D  D  Q  E  K  E  E  E  R  M  Q  M  K  R  F  R  *  T  Q  T  V  V  D  N  V  D  K  K  G  T  T  E  E  L  V  L  S  T  Q  K  R  S  E  F  V  V  M  F  L  *  Y  K  E  *  F  I  T  *  T  F  K  *  I  S  V  L  I  T  T  A  N  *  K  L  C  V  *  I  N  K  R  T  N  M  L  *  L  H  L   </second_frame>
            <third_frame>   *  A  E  S  M  L  L  W  *  I  S  T  R  *  D  T  L  F  T  C  N  S  C  I  E  K  K  E  C  H  R  Y  E  S  V  L  L  *  L  L  Q  A  *  C  V  G  K  N  I  *  N  S  N  D  A  N  A  R  *  E  R  L  V  R  S  *  T  R  G  S  *  N  C  V  S  T  *  I  Q  K  I  I  W  T  I  K  K  K  K  K  K  E  C  R  *  K  D  F  G  E  H  K  L  L  W  T  M  W  T  R  R  A  Q  Q  K  N  L  Y  F  L  P  K  R  E  V  N  L  S  *  C  F  Y  D  I  K  N  N  L  S  R  K  H  L  N  E  F  Q  F  *  L  R  L  Q  I  E  N  F  V  F  R  *  I  N  V  Q  T  C  C  N  Y  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78270" stop="77893"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LERKVCCCGRFQLDEIPCSHAIAVLKKKNVTDMNPYCSDYYKPDALAKTYEIPMMPMPDKKDWSDLKHVVAETVYPPRYRRSSGRSRKRRRKNADEKISVNTNCCGQCGQEGHNRRTCTFYPKEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="88292" PGL_stop="87718"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88292" e_stop="87718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="88292" e_stop="87718" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88292" stop="87718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTTAAATATCTTGAACAGGGTACAGATGATATTACAAACGATAATGGTATACCGGAACTATTGAACTGGTGGAGAAATCGTGGAGCTCAATATCCAAAACTTAGTAGGATGGTGAAGGATGTGCTTGCAATTCAAGCATCATCAGTAGCTTCGGAGGCAGCTTTCAGCGCGGCAAGATTTCAAATTGGAGACCACAAATTTTCGTTAGCAGAAGACAGCCTGGAGATATCAATGTTATTTAGAGACTGGATAAATGTTGAGCGTAGAAATCAAGGACTTCCAAAGTTAGATAGTCAATTTGAACTTTTCATAGATTCAGCTATTGGATGTGGTAGTGATGATGGCATCGAAATTCAAGATCGTCAACGTGATTTACCAAGACCAGAAGTTGATCACAATCAATCCCTAGCTGAGTTAGAAAGAGGATTTACGGGACTATACAACTATTAGTATTACATTCAAGACATAGTTGAAACAGAACCCTTCCTAGAAGGTGGCTCCGTAAGCTATGTACTCTACTAATAGTTGTAAATTGAAAT</gDNA_template>
            <first_frame> K  L  G  L  D  S  S  N  K  C  E  F  V  K  Y  L  E  Q  G  T  D  D  I  T  N  D  N  G  I  P  E  L  L  N  W  W  R  N  R  G  A  Q  Y  P  K  L  S  R  M  V  K  D  V  L  A  I  Q  A  S  S  V  A  S  E  A  A  F  S  A  A  R  F  Q  I  G  D  H  K  F  S  L  A  E  D  S  L  E  I  S  M  L  F  R  D  W  I  N  V  E  R  R  N  Q  G  L  P  K  L  D  S  Q  F  E  L  F  I  D  S  A  I  G  C  G  S  D  D  G  I  E  I  Q  D  R  Q  R  D  L  P  R  P  E  V  D  H  N  Q  S  L  A  E  L  E  R  G  F  T  G  L  Y  N  Y  *  Y  Y  I  Q  D  I  V  E  T  E  P  F  L  E  G  G  S  V  S  Y  V  L  Y  *  *  L  *  I  E   </first_frame>
            <second_frame>  N  L  V  L  T  L  L  I  N  V  N  L  L  N  I  L  N  R  V  Q  M  I  L  Q  T  I  M  V  Y  R  N  Y  *  T  G  G  E  I  V  E  L  N  I  Q  N  L  V  G  W  *  R  M  C  L  Q  F  K  H  H  Q  *  L  R  R  Q  L  S  A  R  Q  D  F  K  L  E  T  T  N  F  R  *  Q  K  T  A  W  R  Y  Q  C  Y  L  E  T  G  *  M  L  S  V  E  I  K  D  F  Q  S  *  I  V  N  L  N  F  S  *  I  Q  L  L  D  V  V  V  M  M  A  S  K  F  K  I  V  N  V  I  Y  Q  D  Q  K  L  I  T  I  N  P  *  L  S  *  K  E  D  L  R  D  Y  T  T  I  S  I  T  F  K  T  *  L  K  Q  N  P  S  *  K  V  A  P  *  A  M  Y  S  T  N  S  C  K  L  K  </second_frame>
            <third_frame>   T  W  S  *  L  F  *  *  M  *  I  C  *  I  S  *  T  G  Y  R  *  Y  Y  K  R  *  W  Y  T  G  T  I  E  L  V  E  K  S  W  S  S  I  S  K  T  *  *  D  G  E  G  C  A  C  N  S  S  I  I  S  S  F  G  G  S  F  Q  R  G  K  I  S  N  W  R  P  Q  I  F  V  S  R  R  Q  P  G  D  I  N  V  I  *  R  L  D  K  C  *  A  *  K  S  R  T  S  K  V  R  *  S  I  *  T  F  H  R  F  S  Y  W  M  W  *  *  *  W  H  R  N  S  R  S  S  T  *  F  T  K  T  R  S  *  S  Q  S  I  P  S  *  V  R  K  R  I  Y  G  T  I  Q  L  L  V  L  H  S  R  H  S  *  N  R  T  L  P  R  R  W  L  R  K  L  C  T  L  L  I  V  V  N  *  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88292" stop="87807"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLGLDSSNKCEFVKYLEQGTDDITNDNGIPELLNWWRNRGAQYPKLSRMVKDVLAIQASSVASEAAFSAARFQIGDHKFSLAEDSLEISMLFRDWINVERRNQGLPKLDSQFELFIDSAIGCGSDDGIEIQDRQRDLPRPEVDHNQSLAELERGFTGLYNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="90049" PGL_stop="90530"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90049" e_stop="90530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="90049" e_stop="90530" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90049" stop="90530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAATACCATAATGTCTTTCATAGAGTTCATAGGGAGTCGGACTATCTGAATTAATATTTATAGGACCGGGACGGGAAAAACTAGTTTCATTCACATGCGTAAATTCATCTGTATTTATTCTAACAAGAGGAATTTTAGATTTAGACGAACTAGCACCTTTGTTAGTTTTTTTAACTAATTTTTTTACTGATTCTACTAGACCTTTTTTACTTCCACTTTTTTTAGAAGACTCCATGATATAAAATTATAAATTATAAAATACGAAACTTAACAAGAACAATAATATAACAAGAACAACTTACAAGTTAAATAATAAATACAAAAAATAAATATAAGATTAGAGAGTGGAACGAAGTTACCAAACGTTTGTATAAGAGTAAACGATTATAATGAAAATTAAAATATTGATGTCGAAACTTGAAATTTGAAGAAGATTCCTCCTCCGAAATACACCAAATGACCAAATGATATAAGTTATAA</gDNA_template>
            <first_frame> I  N  T  I  M  S  F  I  E  F  I  G  S  R  T  I  *  I  N  I  Y  R  T  G  T  G  K  T  S  F  I  H  M  R  K  F  I  C  I  Y  S  N  K  R  N  F  R  F  R  R  T  S  T  F  V  S  F  F  N  *  F  F  Y  *  F  Y  *  T  F  F  T  S  T  F  F  R  R  L  H  D  I  K  L  *  I  I  K  Y  E  T  *  Q  E  Q  *  Y  N  K  N  N  L  Q  V  K  *  *  I  Q  K  I  N  I  R  L  E  S  G  T  K  L  P  N  V  C  I  R  V  N  D  Y  N  E  N  *  N  I  D  V  E  T  *  N  L  K  K  I  P  P  P  K  Y  T  K  *  P  N  D  I  S  Y   </first_frame>
            <second_frame>  L  I  P  *  C  L  S  *  S  S  *  G  V  G  L  S  E  L  I  F  I  G  P  G  R  E  K  L  V  S  F  T  C  V  N  S  S  V  F  I  L  T  R  G  I  L  D  L  D  E  L  A  P  L  L  V  F  L  T  N  F  F  T  D  S  T  R  P  F  L  L  P  L  F  L  E  D  S  M  I  *  N  Y  K  L  *  N  T  K  L  N  K  N  N  N  I  T  R  T  T  Y  K  L  N  N  K  Y  K  K  *  I  *  D  *  R  V  E  R  S  Y  Q  T  F  V  *  E  *  T  I  I  M  K  I  K  I  L  M  S  K  L  E  I  *  R  R  F  L  L  R  N  T  P  N  D  Q  M  I  *  V  I  </second_frame>
            <third_frame>   *  Y  H  N  V  F  H  R  V  H  R  E  S  D  Y  L  N  *  Y  L  *  D  R  D  G  K  N  *  F  H  S  H  A  *  I  H  L  Y  L  F  *  Q  E  E  F  *  I  *  T  N  *  H  L  C  *  F  F  *  L  I  F  L  L  I  L  L  D  L  F  Y  F  H  F  F  *  K  T  P  *  Y  K  I  I  N  Y  K  I  R  N  L  T  R  T  I  I  *  Q  E  Q  L  T  S  *  I  I  N  T  K  N  K  Y  K  I  R  E  W  N  E  V  T  K  R  L  Y  K  S  K  R  L  *  *  K  L  K  Y  *  C  R  N  L  K  F  E  E  D  S  S  S  E  I  H  Q  M  T  K  *  Y  K  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90083" stop="90292"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVGLSELIFIGPGREKLVSFTCVNSSVFILTRGILDLDELAPLLVFLTNFFTDSTRPFLLPLFLEDSMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="104293" PGL_stop="96148"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104293" e_stop="103732"/>
            <exon e_start="96631" e_stop="96148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.934"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="104293" e_stop="103732" e_length="562"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103731" i_stop="96632" i_length="7100"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="96631" e_stop="96148" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104293" stop="103732"/>
              <exon start="96631" stop="96473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104293" stop="103890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96628" stop="96391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96627" stop="96148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATTAAGCATGATGAAGCTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTAATGACGATGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGATACTTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCAACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAGCTGACACATAGATTTAGGGGATCGGA : GTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAACGATATAGTACTTGCTGTTGCTACAGGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCTTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCGTCTTCGACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  K  H  D  E  A  I  E  S  Q  I  L  I  K  T  *  S  L  L  M  T  M  P  W  Y  K  R  R  R  D  E  L  K  *  W  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  M  N  R  H  V  D  L  G  D  R  V  S  R  T  N  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  S  *  H  I  D  L  G  D  R   : S  V  T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  T  I  *  Y  L  L  L  L  Q  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  L  S  M  M  K  L  L  N  P  K  S  *  *  K  P  N  L  F  *  *  R  C  L  G  I  K  E  G  V  M  N  *  N  N  G  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  I  L  R  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  *  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  A  D  T  *  I  *  G  I  G  :  V  S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  R  Y  S  T  C  C  C  Y  R  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  I  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  R  R  L  R  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  *  A  *  *  S  Y  *  I  P  N  L  D  K  N  L  I  S  F  N  D  D  A  L  V  *  K  K  A  *  *  T  K  I  M  G  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  Y  L  E  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  Q  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  L  T  H  R  F  R  G  S  E :   C  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  A  V  A  T  G  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  L  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  V  V  F  D  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96409" stop="96170"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYSTCCCYRLSIIVDFMILLGIYIVFYFELADDIYSVPVFCTDPYFYVFFLFICGVQQTCRRLRLNSNSSQSYYIGNSG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96357" stop="96148"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYLVYILFSILSWPMISTQYPCFVLTLTFMFSSCLFVECSKRAVVFDSTVIQASLTTSEIQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="101983" e_stop="101797"/>
            <exon e_start="101052" e_stop="100539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.893"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.893">
            <gDNA_exon_boundary e_start="101983" e_stop="101797" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101796" i_stop="101053" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="101052" e_stop="100539" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101983" stop="101797"/>
              <exon start="101052" stop="100539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGACTAAGTTTCGTGCATTATCTCGGTATGCCACCAAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCTTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGAAGTGGTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTACGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATTCGTTAGTGTGGGAGGGTGACTACACTTTCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGCAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTTGATTGAGTCGGTTTCGGTAGTCCGTGAGTTTCGGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCATATAGGGATATTGATTTTTGTATTGACCTTGAGCCGGGTACTCGCCCCATTTCTATACCCCCTTGTAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  D  *  V  S  C  I  I  S  V  C  H  Q  T  M  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  A  D  F  S  F  T  G  S  G  Y  S  E  I  F  S  R  S  G  R  L   : R  C  N  S  G  Y  D  L  A  F  Y  A  I  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  F  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  Q  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  S  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  I  *  G  Y  *  F  L  Y  *  P  *  A  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  K  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  D  F  V  C  E  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  T  K  F  R  A  L  S  R  Y  A  T  K  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  T  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  S  L  V  W  E  G  D  Y  T  F  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  L  I  E  S  V  S  V  V  R  E  F  R  D  V  F  P  A  D  L  P  G  M  P  P  Y  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  C  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  I  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  L  G  M  P  P  N  Y  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  Q  L  Y  R  *  R  L  Q  R  N  L  F  K  K  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  N  L  Q  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  S  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  A  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  *  L  S  R  F  R  *  S  V  S  F  G  M  C  S  L  Q  I  F  L  V  C  H  H  I  G  I  L  I  F  V  L  T  L  S  R  V  L  A  P  F  L  Y  P  L  V  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101982" stop="101797"/>
                    <exon start="101052" stop="100540"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYETKFRALSRYATKLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEVVDFDVILGMTWLSTQFAILDCNAKTVTLAKPGTDSLVWEGDYTFNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPLIESVSVVREFRDVFPADLPGMPPYRDIDFCIDLEPGTRPISIPPCRMAPAELRELKAQLQELLNKGFIRPSASPWGAPILFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="96300" PGL_stop="96614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96300" e_stop="96614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="96300" e_stop="96614" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96300" stop="96614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACCTGTAGCAACAGCAAGTACTATATCGTTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTAC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  T  I  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  L  *  Q  Q  Q  V  L  Y  R  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  K  Q  Y  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  S  K  Y  Y  I  V  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S   </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  N  N  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  P  V  A  T  A  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0111C06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="98485" PGL_stop="98661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98485" e_stop="98661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="98485" e_stop="98661" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98485" stop="98661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAAGGTAAGAAGCTATCCCAATGGCCTCCAAACTCTATCACACATGCGCGAAGCATATCCTCCAACACTTGAATCATTCGCTCAGACTGACCACCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  I  R  S  D  *  P  P </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  I  P  L  K  V  R  S  Y  P  N  G  L  Q  T  L  S  H  M  R  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  F  R  *  R  *  E  A  I  P  M  A  S  K  L  Y  H  T  C  A  K  H  I  L  Q  H  L  N  H  S  L  R  L  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0111C06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="99966" PGL_stop="102039"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99966" e_stop="102039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="99966" e_stop="102039" e_length="2074"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99966" stop="100679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99966" stop="100562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99966" stop="100492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100037" stop="100717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100037" stop="100396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100487" stop="101145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100556" stop="101317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100556" stop="101216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101166" stop="101724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101250" stop="102039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101252" stop="101785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101326" stop="102023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGAAAAATCGGTGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTTACTATCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAAAAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACGAAGAGGTCAAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATTAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTACAAGGGGGTATAGAAATGGGGCGAGTACCCGGCTCAAGGTCAATACAAAAATCAATATCCCTATATGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGGACTACCGAAACCGACTCAATCAAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTGCTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGAAAGTGTAGTCACCCTCCCACACTAACGAATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGTAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTAGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACATGAATAGGTATATCAAGTAATTCACAATGTAAATTTAAACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCATTCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCACTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGCGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTAGTATCCATAGTGAAGTCATCTGGCTTCACTCCCTCTACCTCTATTACGAAGTCTACCACTTCTTGAAAAGATTTCGCTGTAGCCGCTACCTGTAAAGCTGAAATCCGCAACTCTGATCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACATAGTTTGGTGGCATACCGAGATAATGCACGAAACTTAGTCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTT</gDNA_template>
            <first_frame> E  S  L  E  K  S  V  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  Y  Y  L  N  L  R  R  I  H  H  H  S  I  L  K  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  L  S  C  S  L  S  I  S  V  Y  H  Q  *  I  R  S  R  R  G  Q  N  M  A  *  K  S  R  S  S  S  S  L  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  S  Q  T  K  S  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  A  Q  G  Q  Y  K  N  Q  Y  P  Y  M  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  L  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  C  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  *  K  C  S  H  P  P  T  L  T  N  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  *  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  S  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  V  Y  Q  V  I  H  N  V  N  L  N  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  I  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  H  C  P  Y  H  V  V  M  *  R  L  Q  F  A  H  H  L  G  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  S  V  L  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  T  L  *  S  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  S  N  L  R  N  L  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  F  L  M  *  Y  P  *  *  S  H  L  A  S  L  P  L  P  L  L  R  S  L  P  L  L  E  K  I  S  L  *  P  L  P  V  K  L  K  S  A  T  L  I  S  T  P  S  Q  N  G  E  S  A  L  V  D  *  N  I  V  W  W  H  T  E  I  M  H  E  T  *  S  H  M  H  *  P  T  S  Y  L  A  L  G  S  G  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  </first_frame>
            <second_frame>  N  P  L  K  N  R  W  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  I  S  I  L  E  G  S  T  I  T  P  S  L  K  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  F  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  K  I  W  L  K  N  P  V  H  Q  A  H  *  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  L  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  T  R  G  Y  R  N  G  A  S  T  R  L  K  V  N  T  K  I  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  P  K  L  T  D  Y  R  N  R  L  N  Q  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  A  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  E  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  M  N  R  Y  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  F  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  H  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  I  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  A  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  L  F  W  T  I  S  P  N  M  S  S  L  P  T  S  I  T  L  S  R  V  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  S  I  H  S  E  V  I  W  L  H  S  L  Y  L  Y  Y  E  V  Y  H  F  L  K  R  F  R  C  S  R  Y  L  *  S  *  N  P  Q  L  *  S  Q  P  L  H  K  T  A  N  P  L  L  W  T  E  T  *  F  G  G  I  P  R  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L </second_frame>
            <third_frame>   I  P  *  K  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  L  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  I  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  *  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  I  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  Q  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  Y  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  K  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  K  V  *  S  P  S  H  T  N  E  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  V  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  *  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  *  I  G  I  S  S  N  S  Q  C  K  F  K  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  H  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  T  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  A  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  V  S  I  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  *  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  H  S  L  V  A  Y  R  D  N  A  R  N  L  V  S  Y  A  L  T  D  I  L  P  C  S  R  L  R  N  S  S  L  F  L  S  L  K  V  R  G  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100649" stop="100939"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWAFNSLNSAGAILQGGIEMGRVPGSRSIQKSISLYGGIPGRSAGNTSRNSRTTETDSIKGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101398" stop="101652"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAILVTTITSTTTSSRITASTMTTSTSSHWGSITLFWTISPNMSSLPTSITLSRVKHRSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101816" stop="102037"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDFAVAATCKAEIRNSDLNPFTKRRIRSCGLKHSLVAYRDNARNLVSYALTDILPCSRLRNSSLFLSLKVRGIY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100672" stop="100872"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSTRGYRNGASTRLKVNTKINIPIWWHTRKICREHIPKLTDYRNRLNQRYLGSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100163" stop="100360"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYISISSINTITKRSKYGLKIPFIKLINAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="106596" PGL_stop="105789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106596" e_stop="105789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="106596" e_stop="105789" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106596" stop="105789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCATGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATATTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGATCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTAAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATACAGTCAGTGTAGTGAGAAGATTCATGGGACAACCAGGGAAAGAACATTGGCAGGCTGTGAAGAGAATAGTCCGGTACCTTAGAGGTACATCTGACATTGGTCTCATTTATGAAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  M  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  T  A  I  W  *  S  W  A  I  F  G  A  H  M  I  V  V  S  T  T  I  G  S  R  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  L  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  I  Q  S  V  *  *  E  D  S  W  D  N  Q  G  K  N  I  G  R  L  *  R  E  *  S  G  T  L  E  V  H  L  T  L  V  S  F  M  K  V  I  L  S  A  W  L  L  A  I  L  I  L  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  C  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  D  Q  G  *  F  I  H  L  S  G  A  L  C  R  *  Y  A  D  S  C  K  E  E  V  *  H  S  E  A  K  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  S  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  Y  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  Y  S  Q  C  S  E  K  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  S  P  V  P  *  R  Y  I  *  H  W  S  H  L  *  R  *  Y  S  V  L  G  Y  W  L  F  *  F  *  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  I  R  S  S  Y  D  C  C  V  Y  Y  N  R  I  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  T  V  S  V  V  R  R  F  M  G  Q  P  G  K  E  H  W  Q  A  V  K  R  I  V  R  Y  L  R  G  T  S  D  I  G  L  I  Y  E  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106594" stop="105791"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYIRSSYDCCVYYNRIKDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHTVSVVRRFMGQPGKEHWQAVKRIVRYLRGTSDIGLIYEGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="107255" PGL_stop="106607"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107255" e_stop="106607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="107255" e_stop="106607" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107255" stop="106607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107254" stop="106870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGGGCGATTTGAAAGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCTAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGAGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAATCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGATATGGAGTCCCTACACAAGAATCAGACATGGGATTTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGAAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAACGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  *  T  G  G  V  S  S  H  S  E  R  G  R  F  E  R  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  E  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  I  H  F  K  S  *  F  *  K  M  V  C  C  Y  G  R  *  Y  G  V  P  T  Q  E  S  D  M  G  F  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  Y  T  S  E  S  G  A  *  T  T  *  C  E  D  N  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  G  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  L  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  S  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  S  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  D  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  E  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  T  H  Q  N  L  E  L  E  Q  L  D  V  K  T  T  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  I  N  R  W  S  F  K  S  F  R  T  R  A  I  *  K  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  *  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  *  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  N  P  F  *  V  L  I  L  K  N  G  L  L  L  W  E  M  I  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  K  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107254" stop="106607"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNEGDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRLRRVGVRPPTRYGFEDMVSYALQVAEEVDTSEPSTYKESILSPDSEKWFAAMGDDMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEEVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVTHQNLELEQLDVKTTFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="121737" PGL_stop="119723"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121737" e_stop="121698"/>
            <exon e_start="120603" e_stop="120366"/>
            <exon e_start="120209" e_stop="119723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.872" e_score="0.900"/>
          <exon-intron don_prob="0.973" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="121737" e_stop="121698" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.872">
            <gDNA_intron_boundary i_start="121697" i_stop="120604" i_length="1094"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120603" e_stop="120366" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120365" i_stop="120210" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="120209" e_stop="119723" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121737" stop="121698"/>
              <exon start="120603" stop="120366"/>
              <exon start="120209" stop="119723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120151" stop="119850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGATAAAATTGTCAGTGTCTTCATACATCTTTTACCTG : GGTTGGTTTTCTTCACAATTCGCTGGTGGGATCCTGAGTTTTTTGGAGCTATGCATCCTGAAGGAACTCCAGAACGAGCATCATGGCCTTATGTAGAAAGCCAGTCCTACCTTTGGACTTGGCTATTTTGGGTACCGTTAGCTGCATACTTTCTCTGGCAGGTTCTCTATTACCTTATAGTAGATGTCCTACGTCGACAGAGGTTTCTGCGAGACCCTGAAGTCATGACATCTTACAG : GGAGCTCTCCAAAAAGGCAAAGAAAGCAAACAACGTATGGTGGCGTGTTAGTGGTTTGCTTGGGGACCAGAATCGCTTGCTTATGTATATTCTGCTGCAGGCCATATTTACTGTAGCAACTACAGCGCTCACAGTGCCCATATTTCTGTCATATAAGTTGCATGTTGTATTCCAAATCTTCAAAGTTTCAGCATCTATATGGAATGGTGGAAACTTTATGCTTGATGTGATGCCCAGACAAGTGATTCTCAAGGAGGAAAAGAAAAAGTCAAAGATGTCAACTGTCCCCGACCAGAACGATGAGATTTCTTTACACGAGACCAACGACACTTCTGAAACAGTTCATTCAGAATAATGGAAGTGTTCATCATCTGATTTAGCTGTTGTTAACTTTTCTATCTGCTTTACACATGAATGAAAGGTTTAAGTTGTGTGACTCACAAAGTTGTAGATTTGGTGAAAGGGAAAATGAACTATCTTCATTCTA</gDNA_template>
            <first_frame> V  D  K  I  V  S  V  F  I  H  L  L  P   : G  L  V  F  F  T  I  R  W  W  D  P  E  F  F  G  A  M  H  P  E  G  T  P  E  R  A  S  W  P  Y  V  E  S  Q  S  Y  L  W  T  W  L  F  W  V  P  L  A  A  Y  F  L  W  Q  V  L  Y  Y  L  I  V  D  V  L  R  R  Q  R  F  L  R  D  P  E  V  M  T  S  Y  R :   E  L  S  K  K  A  K  K  A  N  N  V  W  W  R  V  S  G  L  L  G  D  Q  N  R  L  L  M  Y  I  L  L  Q  A  I  F  T  V  A  T  T  A  L  T  V  P  I  F  L  S  Y  K  L  H  V  V  F  Q  I  F  K  V  S  A  S  I  W  N  G  G  N  F  M  L  D  V  M  P  R  Q  V  I  L  K  E  E  K  K  K  S  K  M  S  T  V  P  D  Q  N  D  E  I  S  L  H  E  T  N  D  T  S  E  T  V  H  S  E  *  W  K  C  S  S  S  D  L  A  V  V  N  F  S  I  C  F  T  H  E  *  K  V  *  V  V  *  L  T  K  L  *  I  W  *  K  G  K  *  T  I  F  I  L </first_frame>
            <second_frame>  L  I  K  L  S  V  S  S  Y  I  F  Y  L  :  G  W  F  S  S  Q  F  A  G  G  I  L  S  F  L  E  L  C  I  L  K  E  L  Q  N  E  H  H  G  L  M  *  K  A  S  P  T  F  G  L  G  Y  F  G  Y  R  *  L  H  T  F  S  G  R  F  S  I  T  L  *  *  M  S  Y  V  D  R  G  F  C  E  T  L  K  S  *  H  L  T   : G  S  S  P  K  R  Q  R  K  Q  T  T  Y  G  G  V  L  V  V  C  L  G  T  R  I  A  C  L  C  I  F  C  C  R  P  Y  L  L  *  Q  L  Q  R  S  Q  C  P  Y  F  C  H  I  S  C  M  L  Y  S  K  S  S  K  F  Q  H  L  Y  G  M  V  E  T  L  C  L  M  *  C  P  D  K  *  F  S  R  R  K  R  K  S  Q  R  C  Q  L  S  P  T  R  T  M  R  F  L  Y  T  R  P  T  T  L  L  K  Q  F  I  Q  N  N  G  S  V  H  H  L  I  *  L  L  L  T  F  L  S  A  L  H  M  N  E  R  F  K  L  C  D  S  Q  S  C  R  F  G  E  R  E  N  E  L  S  S  F   </second_frame>
            <third_frame>   *  *  N  C  Q  C  L  H  T  S  F  T  W :   V  G  F  L  H  N  S  L  V  G  S  *  V  F  W  S  Y  A  S  *  R  N  S  R  T  S  I  M  A  L  C  R  K  P  V  L  P  L  D  L  A  I  L  G  T  V  S  C  I  L  S  L  A  G  S  L  L  P  Y  S  R  C  P  T  S  T  E  V  S  A  R  P  *  S  H  D  I  L  Q  :  G  A  L  Q  K  G  K  E  S  K  Q  R  M  V  A  C  *  W  F  A  W  G  P  E  S  L  A  Y  V  Y  S  A  A  G  H  I  Y  C  S  N  Y  S  A  H  S  A  H  I  S  V  I  *  V  A  C  C  I  P  N  L  Q  S  F  S  I  Y  M  E  W  W  K  L  Y  A  *  C  D  A  Q  T  S  D  S  Q  G  G  K  E  K  V  K  D  V  N  C  P  R  P  E  R  *  D  F  F  T  R  D  Q  R  H  F  *  N  S  S  F  R  I  M  E  V  F  I  I  *  F  S  C  C  *  L  F  Y  L  L  Y  T  *  M  K  G  L  S  C  V  T  H  K  V  V  D  L  V  K  G  K  M  N  Y  L  H  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0111C06.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121737" stop="121698"/>
                    <exon start="120603" stop="120366"/>
                    <exon start="120209" stop="119855"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDKIVSVFIHLLPGLVFFTIRWWDPEFFGAMHPEGTPERASWPYVESQSYLWTWLFWVPLAAYFLWQVLYYLIVDVLRRQRFLRDPEVMTSYRELSKKAKKANNVWWRVSGLLGDQNRLLMYILLQAIFTVATTALTVPIFLSYKLHVVFQIFKVSASIWNGGNFMLDVMPRQVILKEEKKKSKMSTVPDQNDEISLHETNDTSETVHSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 275 chains have been computed
$ 
$ memory statistics:
$ 283376 bytes spliced alignments in total
$ 64 spliced alignments have been stored
$ 4427 bytes was the average size of a spliced alignment
$ 27304 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1516 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 345 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-27 11:09:36
-->
