<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-22 20:45:27"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0121E18-fcthe/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-iIgfez/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iIgfez/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339313" ref_strand="+" ref_description="SGN-U339313        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: SJCHGC09205(evalue: 2e-05, score=52.4)">
      <seq>caaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaagaatagttcaacaaattatatatccgccataacaagctcaatattaatcaatcacaagttctgcagaaaggcaataagaagatcgagaaaatacgatatcaagttcactaatgataagtgtgtaatgcaatggaatgcaatgtcaagtataatgatgcatgtctgacctagtgatatacacccgctgtctctcagtccgggacccttgggggacatatctgtccatgcatctgtcgcggcgcacgacacgatcctcgataatagtaaccatcacggcgcgcgatacgttcctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaatggtacatcctcttaagtacccattatttctcaatgcacataacacttgccacaaccaatgcctcagaataatgcagatgacaagttcacacatataatgaggagatgaccattttcataacatcctacagttcacaaccacacaaacatcaagttacatcaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0121E18-fcthe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0121E18.1" temp_strand="-" temp_description="C07SLm0121E18.1  AC212655.1 htgs_phase:1 submitted_to_sgn_as:gi|158262148|gb|AC212655.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0121E18, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces">
        <position start="32122" stop="30927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31822" g_stop="31468" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31467" i_stop="31430" i_length="38">
            <donor d_prob="0.900" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31429" g_stop="31227" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="557" r_length="203" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0121E18.1" gen_strand="-" ref_id="SGN-U339313" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0121E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31822" e_stop="31468"/>
          <exon e_start="31429" e_stop="31227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATCCTCAACAACAATACTCCAATAAATTATATATCCGCAATAACAAGATCCATATTGATCAATCACAAGTTTCGCAGAAAGGCAATCAGAA-ATCAACAAAACACGATATCAAGTTCACTAATGATAAGTATGTGCAATGCAATGGAATACAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGTTGTCTCTCAGTCCGGGACCCACGGAGGACATATCTATCCATGCATCTGTCGCGGCGCACGATGCAACCCTCAATAATAGTAACCATCACGGCACGCGATACGTCCCTCGAAATATAGTATCCATCGATTCGCGCGATACGTCCCTCAAAATATAGTATCCATCGCAGTGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACTCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCATAATAATGCAGATGACAAGTTCACACAAATAATGAGGAGATGAGCATTTTCATAACATTGCACAGTTCACAACCACACAAACATGAAATCACATCAACAATGA</genome_strand>
        <mrna_strand>CAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATCCTCAACAAGAATAGTTCAACAAATTATATATCCGCCATAACAAGCTCAATATTAATCAATCACAAGTTCTGCAGAAAGGCAATAAGAAGATCGAGAAAATACGATATCAAGTTCACTAATGATAAG--TGTGTAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATATACACCCGCTGTCTCTCAGTCCGGGACCCTTGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGATCCTCGATAATAGTAACCATCACGGCGCGCGATACGTTCCTCGAAATATA......................................GTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCCTACAGTTCACAACCACACAAACATCAAGTTACATCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iIgfez/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312788" ref_strand="+" ref_description="SGN-U312788        Tomato 200607 #1 [58 ESTs aligned] arabidopsis/peptide: | Symbol: None | sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, strong similarity to SP:P49040 Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) {Arabidopsis thaliana} (SUS1) | chr3:15190055-15194977 REVERSE | Aliases: F7K15.40(evalue: 0, score=1306) genbank/nr: gi|3758873|emb|CAA09593.1| sucrose synthase [Lycopersicon esculentum](evalue: 0, score=1614)">
      <seq>caatactctttcatttccatctttgtgttaatttcctccatccattacttccctctatttattattattcctttcaatattcctctctttccattttattcataaaaaataaaaactaaaaaaagttgaaagtcatctgaggatttgcaggtgcaatggctcaacgtgttctaactcgtgttcacagtcttcgtgaacgtcttgatgctactttggatgctcatcgcaatgaaattttgctctttctttcaaggatcgaaagccacgggaaagggatcttgaaacctcaccagctactggctgagtttgaatcaattcagaaagaagacaaagacaaactgaatgatcatgcctttgaagaagtcctgaaatccactcaggaagcaattgttttgcccccatgggttgcacttgctattcgtttgaggcccggtgtgtgggaatatgtccgtgtgaatgttaatgctcttagtgttgaggagctgactgtgcctgagtttttgcaattcaaggaagaacttgttaacggaacttccagtgataactttgttcttgaattggattttgagcccttcactgcatcatttccaaaaccaaccctcacgaaatcaattggaaatggagttgaattcctcaacaggcacctctctgctaaaatgttccatgacaaggaaagcatgacccctcttctcgagtttcttcgagttcaccactacaatggaaagtcaatgatgctgaatgatagaattcagaatttgtatactctccaaaaagtcctgaggaaggccgaggaatacctcaccaccctttcgccagaaacttcatactcctcatttgagcacaagttccaagaaattggcttggagagaggttggggtgacaccgcagagcgtgttctagagatgatctgcatgctcctggatctccttgaggctcctgactcatgtactcttgagaagttccttagtagaattcctatggttttcaatgtagttatactttcacctcatggatatttcgcccaggaaaatgtcttgggttaccccgacactggtggtcaggttgtctatattttggatcaagttcctgccttggagcgtgagatgctcaagcgcataaaggagcaaggacttgatatcaaaccgcgtattcttattgttactcggcttctccctgatgcagttggtaccacttgtggtcagcgactcgagaaggtatttggaactgagcattcacatattcttagggtcccctttaggactgaaaagggcattgttcgcaaatggatctctcgttttgaagtctggccatacatggagactttcattgaggatgtggggaaagaaataaccgcagaactgcaagctaagccagatcttattattggaaactatagtgagggaaaccttgcagcctccttgttggctcacaagttaggtgtaacacagtgcaccattgctcatgcattggagaaaaccaaatatcctgattctgacatttacttgaacaaatttgacgagaaataccacttctcagctcagttcacagctgatcttatagcaatgaatcatactgatttcattatcaccagcaccttccaggagatagcaggaagcaaggacactgttggacagtatgagagccacatggccttcacaatgcctggattgtatagagttgttcatggcattgatgtgttcgaccccaaattcaacattgtgtcaccaggagctgatgtgaatctctatttcccatactccgaaaaggaaaagagattgacaacttttcaccctgaaattgaagacttgctgtttagcgatgttgagaacgaagaacacctgtgtgtgttgaaggacaggaataagcccatcatattcaccatggcaagattggaccgagtgaagaacttaactggacttgtcgagtggtatgctaagaatccacgactaagggagttggttaaccttgtagtggttggtggagaccgaagaaaggaatccaaagacttggaagagcaggcagagatgaagaagatgtatgaacttataaagactcacaatttgaatggccagttccgatggatttcttcccagatgaaccgcgtgaggaatggggaactctacaggtacattgctgacacaaggggagctttcgtgcagcctgcattctacgaggctttcggtctgactgttgttgaggccatgagctgcggtttgcctacatttgcaactaatcaaggtggtccagctgagatcatcgttcatggaaagtctggtttccaaattgatccataccatggcgagcaggctgctgatctcctcgctgagttcttcgagaaatgtaaggtagacccttcacattgggaagccatttccaagggtggccttaagcgtatacaggagaagtacacatggcaaatctactccgaccggctgttgacactagctgctgtttacgggttctggaagcacgtttccaagcttgatcgtcttgaaattcgtcgttatcttgagatgttttacgctctcaaattccgcaagctggctgaacttgtcccattggctgttgagtaaattgacaaagaagagaaggtttctgtctgattgttatccacattgtcctttagaaattgtttgccccacatttgtatctgtttgagaacttcattgtctttttcatttgccatttttcccttctgtagtcatgaagaggattgcaaatttgacattatgtagtgttagtgtgaataaaatatcaaatttcaatctaaaaaaaaaaaactcatattagaattgaataccgtctctaccttcacaagttaatgacagaaatctatgtacgtatcaacttctctcgattttatttatgagattatactgagtttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0121E18-fcthe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0121E18.1" temp_strand="-" temp_description="C07SLm0121E18.1  AC212655.1 htgs_phase:1 submitted_to_sgn_as:gi|158262148|gb|AC212655.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0121E18, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces">
        <position start="63280" stop="57005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62980" g_stop="62856" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62855" i_stop="61523" i_length="1333">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61522" g_stop="61395" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="253" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61394" i_stop="60957" i_length="438">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60956" g_stop="60830" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="380" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60829" i_stop="60718" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60717" g_stop="60566" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="532" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60565" i_stop="60475" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60474" g_stop="60282" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="725" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60281" i_stop="60173" i_length="109">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60172" g_stop="59837" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="1061" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="59836" i_stop="59751" i_length="86">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="59750" g_stop="59655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1062" r_stop="1157" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="59654" i_stop="59562" i_length="93">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="59561" g_stop="59388" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1158" r_stop="1331" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="59387" i_stop="59294" i_length="94">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="59293" g_stop="59177" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1332" r_stop="1448" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="59176" i_stop="59081" i_length="96">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="59080" g_stop="58914" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1449" r_stop="1615" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="58913" i_stop="58827" i_length="87">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="58826" g_stop="58602" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1616" r_stop="1840" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="58601" i_stop="58521" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="58520" g_stop="57957" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1841" r_stop="2404" r_length="564" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="57956" i_stop="57873" i_length="84">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="57872" g_stop="57734" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="2405" r_stop="2543" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="57733" i_stop="57654" i_length="80">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="57653" g_stop="57301" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="2544" r_stop="2896" r_length="353" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0121E18.1" gen_strand="-" ref_id="SGN-U312788" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2896</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0121E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62980" e_stop="62856"/>
          <exon e_start="61522" e_stop="61395"/>
          <exon e_start="60956" e_stop="60830"/>
          <exon e_start="60717" e_stop="60566"/>
          <exon e_start="60474" e_stop="60282"/>
          <exon e_start="60172" e_stop="59837"/>
          <exon e_start="59750" e_stop="59655"/>
          <exon e_start="59561" e_stop="59388"/>
          <exon e_start="59293" e_stop="59177"/>
          <exon e_start="59080" e_stop="58914"/>
          <exon e_start="58826" e_stop="58602"/>
          <exon e_start="58520" e_stop="57957"/>
          <exon e_start="57872" e_stop="57734"/>
          <exon e_start="57653" e_stop="57301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATACTCTTTCATTTCCATCTTTGTGTTAATTTCCTCCATCCATTACTTCCCTCTATTTATTATTATTCCTTTCAATATTCCTCTCTTTCCATTTTATTCATAAAAAATAAAAACTAAAAAAAGGTAAAACCTGCGACTCTAATTTGTNTATGTTATGTCGGTGCGTAAGAATTTTGTTGTTTCATCCCTATCTCATTCGTACATATAAAAAAAAAGGAATAATTTTCAGTAGCATTTGCTTGCACTACTACTCTTGTTCATGTACCTTTCGTTTTCAGAGTAGTTCTTTCTTTTTTTTTTAACAAAAAAAAACATTTTAATATTCATTTTTGTTGACTGATAAAAAGAAGAGATTGTGAGATTTTTTTTTTGTTATACTCTGCAAATTCTAACTTTACTTTCTTTTTTTTTTCATTTTTTTGACAATATTGACAGAAAAATCTATTTATAACCGTCACGGATAGAAAACAATGTATTATACATTTGACGAGAAGAAACAAAAATCCTCACATCTCTTTTCATCTTTTTCTCCTGTTAGTATTGCTCTGTTTTTCTTTCCTCTGTTTTTTTATTTTTTTCAATTCTAGCTATTTAGATGTTGCTTTGTGTGGNGTTGAATGGGTTAAAATCATTTTATTTTTACTTGATTTAGTTTGACGTGAGCTTCAGATATCGAATGATTAAAAAAAATAGTTTCCAATCAAGACATCTTTTATCTTCATAATGTTTTAGTATTTGATTTTGTCACAATTTCTTTAATTTCTTCCCAGTTTTTTGTTTTCGAGTGAAACGTTGAGGAAAACGGGGAAATTTTGTTGATATTTACTAAATTCTAGATGGCATATTCTTTCACTTTATTTCTTTTGAAATATAATATTTGAAGGGTACCTATTGATCATATAGTATATAGGGAGTATGTCATAGGTGTTTTTTATTTATTTATTGGTTCAATTATTGGTGTGGTTTAACTAAAACAGTGAAATACGACTGCTAACACCTATTTTTTAATAAATATATAATAGGAAGATCAGTGCAAGTTCTCTCTGTTGTGTTATTATTGGGCCACATTTCTTTTGGTCGTTTACGTATCCTATTCTGCATTTATTTGATAACTCTCATGACATTATAATATTGGGTAGGTCTGCTAGTTTTTATTATTCCGTCCGTGTTAGTTTGATCGGACGAGTTGATGAATTAAAATAAAAAATTTATGATTTTAAATTATCAGTTAGATATTTGAATTGAAAAAACTTATAAAATATAAAAAATACTTTTTTTTTTTGGAAAATATAGTAGAGCTAGGTGGGGTTGAAAATTTGTGCTAGTATATTCTAGATAATTGGAAAATTAGGTGATTAATTAGGTGACACGATCTCATCTCTTTGAATAGCAGTAATGTGCTAAAATATTTTTATGATTTTTGAGTTAACAGTATTTTGTTTGTTTATTTTTACAGTTGAAAGTCATCTGAGGATTTGCAGGTGCAATGGCTCAACGTGTTCTAACTCGTGTTCACAGTCTTCGTGAACGTCTTGATGCTACTTTGGATGCTCATCGCAATGAAATTTTGCTCTTTCTTTCAAGGTATGGTCTTACAGCCATGTTTTCGCTTTTTGTAATTTTCGTTTGGTATGTTTCGCAAGCCTAAATAGTTTTGGGGATACAAACTTAGTACTGCCTTATTCCTTTGTTTGGTTATTGATCTCGGAATAAGTTATATCAGAATTAGTAATTAGTACCTCGATAAGTTATCTCTGATGGAATAATAGTACTGTTAACTAGTAATCCTGGAACAATACAATGAAAATGACAAAAATCCCCCAGAGGTCCCTTAGATCCTTTTTTACTTAATAAGGTGGAAGGTATTCTCGTAAACAAATAACTTTCGTTCTTAAAAATTATGCAATGAATGTTTGTCCTAGTAAAACTTGTCTTCAAACCAAACGACCCCTAATTGACGGACAAATATATGGTTCCATCAAGTACATCATGAGTTATTCTTGCTGTTTTTGGCTGTATCAGGATCGAAAGCCACGGGAAAGGGATCTTGAAACCTCACCAGCTACTGGCTGAGTTTGAATCAATTCAGAAAGAAGACAAAGACAAACTGAATGATCATGCCTTTGAAGAAGTCCTGAAATCCACTCAGGTAACTTGGTTTTGTTGTTAGGTTGATTATATTTAATTTTCTTACTAAGCTAACATGTGTATCTGTTTGTACTTGCATTTGAAATTTTCTTTTGCGTTGTTCGTCATACTAGGAAGCAATTGTTTTGCCCCCATGGGTTGCACTTGCTATTCGTTTGAGGCCCGGTGTGTGGGAATATGTCCGTGTGAATGTTAATGCTCTTAGTGTTGAGGAGCTGACTGTGCCTGAGTTTTTGCAATTCAAGGAAGAACTTGTTAACGGAACGTAAGTTTTACGTTTGAATTTGATGATGAGTTATCTAATCAACATGTTCTTAGAATCTTTTTGATTAATGTTGTGATTTTCCCTGATGCAGTTCCAGTGATAACTTTGTTCTTGAATTGGATTTTGAGCCCTTCACTGCATCATTTCCAAAACCAACCCTCACGAAATCAATTGGAAATGGAGTTGAATTCCTCAACAGGCACCTCTCTGCTAAAATGTTCCATGACAAGGAAAGCATGACCCCTCTTCTCGAGTTTCTTCGAGTTCACCACTACAATGGAAAGGTAAATTTAGTGTTATGGTGGTTTTTCTCCGATAAATTTCGAGTATGGAGTTACTGATTTTTGCATCCAACAAATGATTAACATGTTCGAACAATCATTTTCTGTGCAGTCAATGATGCTGAATGATAGAATTCAGAATTTGTATACTCTCCAAAAAGTCCTGAGGAAGGCCGAGGAATACCTCACCACCCTTTCGCCAGAAACTTCATACTCCTCATTTGAGCACAAGTTCCAAGAAATTGGCTTGGAGAGAGGTTGGGGTGACACCGCAGAGCGTGTTCTAGAGATGATCTGCATGCTCCTGGATCTCCTTGAGGCTCCTGACTCATGTACTCTTGAGAAGTTCCTTAGTAGAATTCCTATGGTTTTCAATGTAGTTATACTTTCACCTCATGGATATTTCGCCCAGGAAAATGTCTTGGGTTACCCCGACACTGGTGGTCAGGTGCATTGCTTATTTGTGATCACTTTGTCTTACTCCTTAGAAACCTATTGGGGCAAGTGCTGAGTTCCCGTTCCTTTAATTTGCAGGTTGTCTATATTTTGGATCAAGTTCCTGCCTTGGAGCGTGAGATGCTCAAGCGCATAAAGGAGCAAGGACTTGATATCAAACCGCGTATTCTTATTGTTAGTATTCTCAGAGATTGTGCTTATAGATTATGATTATGCAGGATTTTGATTTGTTCTAATGCAACATCTGATCTTTGTTTAAATTCTCAGGTTACTCGGCTTCTCCCTGATGCAGTTGGTACCACTTGTGGTCAGCGACTCGAGAAGGTATTTGGAACTGAGCATTCACATATTCTTAGGGTCCCCTTTAGGACTGAAAAGGGCATTGTTCGCAAATGGATCTCTCGTTTTGAAGTCTGGCCATACATGGAGACTTTCATTGAGGTGAAGCAACTTTTCTGTATTCATTTTTCAGTCTTCTAGTTGATTTTTGCAGCAATTTTCTACTTACACTAAAACTGTGACTTTAATACATTAGGATGTGGGGAAAGAAATAACCGCAGAACTGCAAGCTAAGCCAGATCTTATTATTGGAAACTATAGTGAGGGAAACCTTGCAGCCTCCTTGTTGGCTCACAAGTTAGGTGTAACACAGGTCTGTAACATTGGTCACATGTATAAGATTGACTTTGCATTTCCTTTCATTTGGAACTCGGAGTTATTAAGAATTCTCTTTTGCGTTGATCTGCAGTGCACCATTGCTCATGCATTGGAGAAAACCAAATATCCTGATTCTGACATTTACTTGAACAAATTTGACGAGAAATACCACTTCTCAGCTCAGTTCACAGCTGATCTTATAGCAATGAATCATACTGATTTCATTATCACCAGCACCTTCCAGGAGATAGCAGGAAGGTATGACATCAATTCGCTCTATGATTAAATTGTTCTTCTTCCTGTTTCATTGTGTTTGATCCTAAAACATTTTTCAATTTTCTTTAGCAAGGACACTGTTGGACAGTATGAGAGCCACATGGCCTTCACAATGCCTGGATTGTATAGAGTTGTTCATGGCATTGATGTGTTCGACCCCAAATTCAACATTGTGTCACCAGGAGCTGATGTGAATCTCTATTTCCCATACTCCGAAAAGGAAAAGAGATTGACAACTTTTCACCCTGAAATTGAAGACTTGCTGTTTAGCGATGTTGAGAACGAAGAACACCTGTATGTTTCTATAATAGTGCAACATTGTGTTTACTGATATAAACAAGCTTGTACTGAAATAGATTTGTGTTCCTATATCAGGTGTGTGTTGAAGGACAGGAATAAGCCCATCATATTCACCATGGCAAGATTGGACCGAGTGAAGAACTTAACTGGACTTGTCGAGTGGTATGCTAAGAATCCACGACTAAGGGAGTTGGTTAACCTTGTAGTGGTTGGTGGAGACCGAAGAAAGGAATCCAAAGACTTGGAAGAGCAGGCAGAGATGAAGAAGATGTATGAACTTATAAAGACTCACAATTTGAATGGCCAGTTCCGATGGATTTCTTCCCAGATGAACCGCGTGAGGAATGGGGAACTCTACAGGTACATTGCTGACACAAGGGGAGCTTTCGTGCAGCCTGCATTCTACGAGGCTTTCGGTCTGACTGTTGTTGAGGCCATGAGCTGCGGTTTGCCTACATTTGCAACTAATCAAGGTGGTCCAGCTGAGATCATCGTTCATGGAAAGTCTGGTTTCCAAATTGATCCATACCATGGCGAGCAGGCTGCTGATCTCCTCGCTGAGTTCTTCGAGAAATGTAAGGTAGACCCTTCACATTGGGAAGCCATTTCCAAGGGTGGCCTTAAGCGTATACAGGAGAAGTAAGCTGCTCATCTTTTCGTCCTATCACGTGATCACTATTGAGTGCATTAATTCAAAGTGATTCTAATCTCCTGTTGCTGTAGGTACACATGGCAAATCTACTCCGACCGGCTGTTGACACTAGCTGCTGTTTACGGGTTCTGGAAGCACGTTTCCAAGCTTGATCGTCTTGAAATTCGTCGTTATCTTGAGATGTTTTACGCTCTCAAATTCCGCAAGCTGGTATGTCTCTCTGCTTTCTGCACTTGTCCAATAGTCTAAAGCAACTGTTAATGGAGCTTCTGTATTTTGTTTTGATTCAGGCTGAACTTGTCCCATTGGCTGTTGAGTAAATTGACAAAGAAGAGAAGGTTTCTGTCTGATTGTTATCCACATTGTCCTTTAGAAATTGTTTGCCCCACATTTGTATCTGTTTGAGAACTTCATTGTCTTTTTCATTTGCCATTTTTCCCTTCTGTAGTCATGAAGAGGATTGCAAATTTGACATTATGTAGTGTTAGTGTGAATAAAATATCAAATTTCAATCTACTCCATCCATCCTCATATTAGAATTGAATACCGTCTCTACCTTCACAAGTTAATGACAGAAATCTATGTACGTATCAACTTCTCTCGATTTTATTTATGAGATTATACTGAGTTTGTAACATACTAG</genome_strand>
        <mrna_strand>CAATACTCTTTCATTTCCATCTTTGTGTTAATTTCCTCCATCCATTACTTCCCTCTATTTATTATTATTCCTTTCAATATTCCTCTCTTTCCATTTTATTCATAAAAAATAAAAACTAAAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTCATCTGAGGATTTGCAGGTGCAATGGCTCAACGTGTTCTAACTCGTGTTCACAGTCTTCGTGAACGTCTTGATGCTACTTTGGATGCTCATCGCAATGAAATTTTGCTCTTTCTTTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAAAGCCACGGGAAAGGGATCTTGAAACCTCACCAGCTACTGGCTGAGTTTGAATCAATTCAGAAAGAAGACAAAGACAAACTGAATGATCATGCCTTTGAAGAAGTCCTGAAATCCACTCAG................................................................................................................GAAGCAATTGTTTTGCCCCCATGGGTTGCACTTGCTATTCGTTTGAGGCCCGGTGTGTGGGAATATGTCCGTGTGAATGTTAATGCTCTTAGTGTTGAGGAGCTGACTGTGCCTGAGTTTTTGCAATTCAAGGAAGAACTTGTTAACGGAAC...........................................................................................TTCCAGTGATAACTTTGTTCTTGAATTGGATTTTGAGCCCTTCACTGCATCATTTCCAAAACCAACCCTCACGAAATCAATTGGAAATGGAGTTGAATTCCTCAACAGGCACCTCTCTGCTAAAATGTTCCATGACAAGGAAAGCATGACCCCTCTTCTCGAGTTTCTTCGAGTTCACCACTACAATGGAAAG.............................................................................................................TCAATGATGCTGAATGATAGAATTCAGAATTTGTATACTCTCCAAAAAGTCCTGAGGAAGGCCGAGGAATACCTCACCACCCTTTCGCCAGAAACTTCATACTCCTCATTTGAGCACAAGTTCCAAGAAATTGGCTTGGAGAGAGGTTGGGGTGACACCGCAGAGCGTGTTCTAGAGATGATCTGCATGCTCCTGGATCTCCTTGAGGCTCCTGACTCATGTACTCTTGAGAAGTTCCTTAGTAGAATTCCTATGGTTTTCAATGTAGTTATACTTTCACCTCATGGATATTTCGCCCAGGAAAATGTCTTGGGTTACCCCGACACTGGTGGTCAG......................................................................................GTTGTCTATATTTTGGATCAAGTTCCTGCCTTGGAGCGTGAGATGCTCAAGCGCATAAAGGAGCAAGGACTTGATATCAAACCGCGTATTCTTATT.............................................................................................GTTACTCGGCTTCTCCCTGATGCAGTTGGTACCACTTGTGGTCAGCGACTCGAGAAGGTATTTGGAACTGAGCATTCACATATTCTTAGGGTCCCCTTTAGGACTGAAAAGGGCATTGTTCGCAAATGGATCTCTCGTTTTGAAGTCTGGCCATACATGGAGACTTTCATTGAG..............................................................................................GATGTGGGGAAAGAAATAACCGCAGAACTGCAAGCTAAGCCAGATCTTATTATTGGAAACTATAGTGAGGGAAACCTTGCAGCCTCCTTGTTGGCTCACAAGTTAGGTGTAACACAG................................................................................................TGCACCATTGCTCATGCATTGGAGAAAACCAAATATCCTGATTCTGACATTTACTTGAACAAATTTGACGAGAAATACCACTTCTCAGCTCAGTTCACAGCTGATCTTATAGCAATGAATCATACTGATTTCATTATCACCAGCACCTTCCAGGAGATAGCAGGAAG.......................................................................................CAAGGACACTGTTGGACAGTATGAGAGCCACATGGCCTTCACAATGCCTGGATTGTATAGAGTTGTTCATGGCATTGATGTGTTCGACCCCAAATTCAACATTGTGTCACCAGGAGCTGATGTGAATCTCTATTTCCCATACTCCGAAAAGGAAAAGAGATTGACAACTTTTCACCCTGAAATTGAAGACTTGCTGTTTAGCGATGTTGAGAACGAAGAACACCT.................................................................................GTGTGTGTTGAAGGACAGGAATAAGCCCATCATATTCACCATGGCAAGATTGGACCGAGTGAAGAACTTAACTGGACTTGTCGAGTGGTATGCTAAGAATCCACGACTAAGGGAGTTGGTTAACCTTGTAGTGGTTGGTGGAGACCGAAGAAAGGAATCCAAAGACTTGGAAGAGCAGGCAGAGATGAAGAAGATGTATGAACTTATAAAGACTCACAATTTGAATGGCCAGTTCCGATGGATTTCTTCCCAGATGAACCGCGTGAGGAATGGGGAACTCTACAGGTACATTGCTGACACAAGGGGAGCTTTCGTGCAGCCTGCATTCTACGAGGCTTTCGGTCTGACTGTTGTTGAGGCCATGAGCTGCGGTTTGCCTACATTTGCAACTAATCAAGGTGGTCCAGCTGAGATCATCGTTCATGGAAAGTCTGGTTTCCAAATTGATCCATACCATGGCGAGCAGGCTGCTGATCTCCTCGCTGAGTTCTTCGAGAAATGTAAGGTAGACCCTTCACATTGGGAAGCCATTTCCAAGGGTGGCCTTAAGCGTATACAGGAGAA....................................................................................GTACACATGGCAAATCTACTCCGACCGGCTGTTGACACTAGCTGCTGTTTACGGGTTCTGGAAGCACGTTTCCAAGCTTGATCGTCTTGAAATTCGTCGTTATCTTGAGATGTTTTACGCTCTCAAATTCCGCAAGCTG................................................................................GCTGAACTTGTCCCATTGGCTGTTGAGTAAATTGACAAAGAAGAGAAGGTTTCTGTCTGATTGTTATCCACATTGTCCTTTAGAAATTGTTTGCCCCACATTTGTATCTGTTTGAGAACTTCATTGTCTTTTTCATTTGCCATTTTTCCCTTCTGTAGTCATGAAGAGGATTGCAAATTTGACATTATGTAGTGTTAGTGTGAATAAAATATCAAATTTCAATCTAAAAAAAAAAAACTCATATTAGAATTGAATACCGTCTCTACCTTCACAAGTTAATGACAGAAATCTATGTACGTATCAACTTCTCTCGATTTTATTTATGAGATTATACTGAGTTTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iIgfez/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312786" ref_strand="+" ref_description="SGN-U312786        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, strong similarity to SP:P49040 Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) {Arabidopsis thaliana} (SUS1) | chr3:15190055-15194977 REVERSE | Aliases: F7K15.40(evalue: 2e-77, score=285) genbank/nr: gi|3758873|emb|CAA09593.1| sucrose synthase [Lycopersicon esculentum](evalue: 5e-99, score=333)">
      <seq>acaatgcctggattgtatagagttgttcatggcattgatgtgttcgaccccaaattcaacattgtgtcaccaggagctgatgtgaatctctatttcccatactccgaaaaggaaaagagattgacaacttttcaccctgaaattgaagacttgctgtttagcgatgttgagaacgaagaacacctgtatgtttctataatagtgcaacattgtgtttactgatataaacaagcttgtactgaaatagatttgtgttcctatatcaggtgtgtgttgaaggacaggaataagcccatcatattcaccatggcaagattggaccgagtgaagaacttaactggacttgtcgagtggtatgctaagaatccacgactaagggagttggttaaccttgtagtggttggtggagaccgaagaaaggaatccaaagacttggaagagcaggcagagatgaagaagatgtatgaacttataaagactcacaatttgaatggccagttccgatggatttcttcccagatgaaccgcgtgaggaatggggaactctacaggtacattgctgacacaaggggagctttcgtgcagcctgcatctacgaggctttcggtctgactgttgttgaagccatgaactgcggtttgcctacatttgcaactaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0121E18-fcthe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0121E18.1" temp_strand="-" temp_description="C07SLm0121E18.1  AC212655.1 htgs_phase:1 submitted_to_sgn_as:gi|158262148|gb|AC212655.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0121E18, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces">
        <position start="59086" stop="57826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58786" g_stop="58126" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0121E18.1" gen_strand="-" ref_id="SGN-U312786" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0121E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58786" e_stop="58126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGCCTGGATTGTATAGAGTTGTTCATGGCATTGATGTGTTCGACCCCAAATTCAACATTGTGTCACCAGGAGCTGATGTGAATCTCTATTTCCCATACTCCGAAAAGGAAAAGAGATTGACAACTTTTCACCCTGAAATTGAAGACTTGCTGTTTAGCGATGTTGAGAACGAAGAACACCTGTATGTTTCTATAATAGTGCAACATTGTGTTTACTGATATAAACAAGCTTGTACTGAAATAGATTTGTGTTCCTATATCAGGTGTGTGTTGAAGGACAGGAATAAGCCCATCATATTCACCATGGCAAGATTGGACCGAGTGAAGAACTTAACTGGACTTGTCGAGTGGTATGCTAAGAATCCACGACTAAGGGAGTTGGTTAACCTTGTAGTGGTTGGTGGAGACCGAAGAAAGGAATCCAAAGACTTGGAAGAGCAGGCAGAGATGAAGAAGATGTATGAACTTATAAAGACTCACAATTTGAATGGCCAGTTCCGATGGATTTCTTCCCAGATGAACCGCGTGAGGAATGGGGAACTCTACAGGTACATTGCTGACACAAGGGGAGCTTTCGTGCAGCCTGCATTCTACGAGGCTTTCGGTCTGACTGTTGTTGAGGCCATGAGCTGCGGTTTGCCTACATTTGCAACTAATC</genome_strand>
        <mrna_strand>ACAATGCCTGGATTGTATAGAGTTGTTCATGGCATTGATGTGTTCGACCCCAAATTCAACATTGTGTCACCAGGAGCTGATGTGAATCTCTATTTCCCATACTCCGAAAAGGAAAAGAGATTGACAACTTTTCACCCTGAAATTGAAGACTTGCTGTTTAGCGATGTTGAGAACGAAGAACACCTGTATGTTTCTATAATAGTGCAACATTGTGTTTACTGATATAAACAAGCTTGTACTGAAATAGATTTGTGTTCCTATATCAGGTGTGTGTTGAAGGACAGGAATAAGCCCATCATATTCACCATGGCAAGATTGGACCGAGTGAAGAACTTAACTGGACTTGTCGAGTGGTATGCTAAGAATCCACGACTAAGGGAGTTGGTTAACCTTGTAGTGGTTGGTGGAGACCGAAGAAAGGAATCCAAAGACTTGGAAGAGCAGGCAGAGATGAAGAAGATGTATGAACTTATAAAGACTCACAATTTGAATGGCCAGTTCCGATGGATTTCTTCCCAGATGAACCGCGTGAGGAATGGGGAACTCTACAGGTACATTGCTGACACAAGGGGAGCTTTCGTGCAGCCTGCA-TCTACGAGGCTTTCGGTCTGACTGTTGTTGAAGCCATGAACTGCGGTTTGCCTACATTTGCAACTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iIgfez/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333920" ref_strand="+" ref_description="SGN-U333920        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, strong similarity to SP:P49040 Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) {Arabidopsis thaliana} (SUS1) | chr3:15190055-15194977 REVERSE | Aliases: F7K15.40(evalue: 5e-41, score=164) genbank/nr: gi|3758873|emb|CAA09593.1| sucrose synthase [Lycopersicon esculentum](evalue: 4e-64, score=247)">
      <seq>agttggtgaattaaaataaaaaatttatgattgtaaattatcagttagatatttgaattgaaaaaacttataaaatataaaaaatactttttttttttggaaaatatagtagagctaggtggggttgaaaatttgtgctagtatattctagataattggaaaattaggtgattaattaggtgacacgatctcatctctttgaatagcagtaatgtgctaaaatatttttatgatttttgagttaacagtattttgtttgtttatttttacagttgaaagtcatctgaggatttgcaggtgcaatggctcaacgtgttctaactcgtgttcacagtcttcgtgaacgtcttgatgctactttggatgctcatcgcaatgaaattttgctctttctttcaaggatcgaaagccacgggaaagggatcttgaaacctcaccagctactggctgagtttgaatcaattcagaaagaagacaaagacaaactgaatgatcatgcctttgaagaagtcctgagatccagtcaggaagcaattgttttgcccccatgggttgcacttgctattcgtttgaggcccggtgtgtgggaatatgtccgtgtgaatgttaatgctcttagtgtagaagagctgactgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0121E18-fcthe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0121E18.1" temp_strand="-" temp_description="C07SLm0121E18.1  AC212655.1 htgs_phase:1 submitted_to_sgn_as:gi|158262148|gb|AC212655.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0121E18, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces">
        <position start="62094" stop="60306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61794" g_stop="61395" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61394" i_stop="60957" i_length="438">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60956" g_stop="60830" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="527" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60829" i_stop="60718" i_length="112">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60717" g_stop="60606" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="639" r_length="112" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0121E18.1" gen_strand="-" ref_id="SGN-U333920" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0121E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61794" e_stop="61395"/>
          <exon e_start="60956" e_stop="60830"/>
          <exon e_start="60717" e_stop="60606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGATGAATTAAAATAAAAAATTTATGATTTTAAATTATCAGTTAGATATTTGAATTGAAAAAACTTATAAAATATAAAAAATACTTTTTTTTTTTGGAAAATATAGTAGAGCTAGGTGGGGTTGAAAATTTGTGCTAGTATATTCTAGATAATTGGAAAATTAGGTGATTAATTAGGTGACACGATCTCATCTCTTTGAATAGCAGTAATGTGCTAAAATATTTTTATGATTTTTGAGTTAACAGTATTTTGTTTGTTTATTTTTACAGTTGAAAGTCATCTGAGGATTTGCAGGTGCAATGGCTCAACGTGTTCTAACTCGTGTTCACAGTCTTCGTGAACGTCTTGATGCTACTTTGGATGCTCATCGCAATGAAATTTTGCTCTTTCTTTCAAGGTATGGTCTTACAGCCATGTTTTCGCTTTTTGTAATTTTCGTTTGGTATGTTTCGCAAGCCTAAATAGTTTTGGGGATACAAACTTAGTACTGCCTTATTCCTTTGTTTGGTTATTGATCTCGGAATAAGTTATATCAGAATTAGTAATTAGTACCTCGATAAGTTATCTCTGATGGAATAATAGTACTGTTAACTAGTAATCCTGGAACAATACAATGAAAATGACAAAAATCCCCCAGAGGTCCCTTAGATCCTTTTTTACTTAATAAGGTGGAAGGTATTCTCGTAAACAAATAACTTTCGTTCTTAAAAATTATGCAATGAATGTTTGTCCTAGTAAAACTTGTCTTCAAACCAAACGACCCCTAATTGACGGACAAATATATGGTTCCATCAAGTACATCATGAGTTATTCTTGCTGTTTTTGGCTGTATCAGGATCGAAAGCCACGGGAAAGGGATCTTGAAACCTCACCAGCTACTGGCTGAGTTTGAATCAATTCAGAAAGAAGACAAAGACAAACTGAATGATCATGCCTTTGAAGAAGTCCTGAAATCCACTCAGGTAACTTGGTTTTGTTGTTAGGTTGATTATATTTAATTTTCTTACTAAGCTAACATGTGTATCTGTTTGTACTTGCATTTGAAATTTTCTTTTGCGTTGTTCGTCATACTAGGAAGCAATTGTTTTGCCCCCATGGGTTGCACTTGCTATTCGTTTGAGGCCCGGTGTGTGGGAATATGTCCGTGTGAATGTTAATGCTCTTAGTGTTGAGGAGCTGACTGTGC</genome_strand>
        <mrna_strand>AGTTGGTGAATTAAAATAAAAAATTTATGATTGTAAATTATCAGTTAGATATTTGAATTGAAAAAACTTATAAAATATAAAAAATACTTTTTTTTTTTGGAAAATATAGTAGAGCTAGGTGGGGTTGAAAATTTGTGCTAGTATATTCTAGATAATTGGAAAATTAGGTGATTAATTAGGTGACACGATCTCATCTCTTTGAATAGCAGTAATGTGCTAAAATATTTTTATGATTTTTGAGTTAACAGTATTTTGTTTGTTTATTTTTACAGTTGAAAGTCATCTGAGGATTTGCAGGTGCAATGGCTCAACGTGTTCTAACTCGTGTTCACAGTCTTCGTGAACGTCTTGATGCTACTTTGGATGCTCATCGCAATGAAATTTTGCTCTTTCTTTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAAAGCCACGGGAAAGGGATCTTGAAACCTCACCAGCTACTGGCTGAGTTTGAATCAATTCAGAAAGAAGACAAAGACAAACTGAATGATCATGCCTTTGAAGAAGTCCTGAGATCCAGTCAG................................................................................................................GAAGCAATTGTTTTGCCCCCATGGGTTGCACTTGCTATTCGTTTGAGGCCCGGTGTGTGGGAATATGTCCGTGTGAATGTTAATGCTCTTAGTGTAGAAGAGCTGACTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iIgfez/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333918" ref_strand="+" ref_description="SGN-U333918        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | sucrose synthase / sucrose-UDP glucosyltransferase (SUS1), identical to SP:P49040 Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase) {Arabidopsis thaliana} | chr5:7050228-7054121 REVERSE | Aliases: T1M15.230, T1M15_230(evalue: 4e-32, score=134) genbank/nr: gi|3758873|emb|CAA09593.1| sucrose synthase [Lycopersicon esculentum](evalue: 1e-55, score=213)">
      <seq>agaaacaaaaatcctcacatctcttttcatctttttgctcctttgaaagtcatctgaggatttgcaggtgcaatggctcaacgtgttctaactcgtgttcacagtcttcgtgaacgtcttgatgccttttnaaancctttggatgctcatcgcaatgaaattttgctctttctttcaaggatcgaaagccacgggaaagggatcttgaaacctcaccagctactggctgagtttgaatcaattcagaaagaagacaaagacaaactgaatgatcatgcctttgaagaagtcctgaaatccactcaggaagcaattgttttgcccccatgggttgcacttgctattcgtttgaggcccggtgtttgggaatatgtccgtgtgaatgttaatgctcttagtgttgaggagctgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0121E18-fcthe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0121E18.1" temp_strand="-" temp_description="C07SLm0121E18.1  AC212655.1 htgs_phase:1 submitted_to_sgn_as:gi|158262148|gb|AC212655.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0121E18, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces">
        <position start="62786" stop="60310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62486" g_stop="62446" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62445" i_stop="61523" i_length="923">
            <donor d_prob="0.987" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61522" g_stop="61395" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="179" r_length="137" r_score="0.859"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61394" i_stop="60957" i_length="438">
            <donor d_prob="0.999" d_score="0.78"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60956" g_stop="60830" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="306" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60829" i_stop="60718" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60717" g_stop="60610" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="414" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0121E18.1" gen_strand="-" ref_id="SGN-U333918" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0121E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62486" e_stop="62446"/>
          <exon e_start="61522" e_stop="61395"/>
          <exon e_start="60956" e_stop="60830"/>
          <exon e_start="60717" e_stop="60610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAAAATCCTCACATCTCTTTTCATCTTTTT-CTCCTGTTAGTATTGCTCTGTTTTTCTTTCCTCTGTTTTTTTATTTTTTTCAATTCTAGCTATTTAGATGTTGCTTTGTGTGGNGTTGAATGGGTTAAAATCATTTTATTTTTACTTGATTTAGTTTGACGTGAGCTTCAGATATCGAATGATTAAAAAAAATAGTTTCCAATCAAGACATCTTTTATCTTCATAATGTTTTAGTATTTGATTTTGTCACAATTTCTTTAATTTCTTCCCAGTTTTTTGTTTTCGAGTGAAACGTTGAGGAAAACGGGGAAATTTTGTTGATATTTACTAAATTCTAGATGGCATATTCTTTCACTTTATTTCTTTTGAAATATAATATTTGAAGGGTACCTATTGATCATATAGTATATAGGGAGTATGTCATAGGTGTTTTTTATTTATTTATTGGTTCAATTATTGGTGTGGTTTAACTAAAACAGTGAAATACGACTGCTAACACCTATTTTTTAATAAATATATAATAGGAAGATCAGTGCAAGTTCTCTCTGTTGTGTTATTATTGGGCCACATTTCTTTTGGTCGTTTACGTATCCTATTCTGCATTTATTTGATAACTCTCATGACATTATAATATTGGGTAGGTCTGCTAGTTTTTATTATTCCGTCCGTGTTAGTTTGATCGGACGAGTTGATGAATTAAAATAAAAAATTTATGATTTTAAATTATCAGTTAGATATTTGAATTGAAAAAACTTATAAAATATAAAAAATACTTTTTTTTTTTGGAAAATATAGTAGAGCTAGGTGGGGTTGAAAATTTGTGCTAGTATATTCTAGATAATTGGAAAATTAGGTGATTAATTAGGTGACACGATCTCATCTCTTTGAATAGCAGTAATGTGCTAAAATATTTTTATGATTTTTGAGTTAACAGTATTTTGTTTGTTTATTTTTACAGTTGAAAGTCATCTGAGGATTTGCAGGTGCAATGGCTCAACGTGTTCTAACTCGTGTTCACAGTCTTCGTGAACGTCTTGATG-C---T---A--CTTTGGATGCTCATCGCAATGAAATTTTGCTCTTTCTTTCAAGGTATGGTCTTACAGCCATGTTTTCGCTTTTTGTAATTTTCGTTTGGTATGTTTCGCAAGCCTAAATAGTTTTGGGGATACAAACTTAGTACTGCCTTATTCCTTTGTTTGGTTATTGATCTCGGAATAAGTTATATCAGAATTAGTAATTAGTACCTCGATAAGTTATCTCTGATGGAATAATAGTACTGTTAACTAGTAATCCTGGAACAATACAATGAAAATGACAAAAATCCCCCAGAGGTCCCTTAGATCCTTTTTTACTTAATAAGGTGGAAGGTATTCTCGTAAACAAATAACTTTCGTTCTTAAAAATTATGCAATGAATGTTTGTCCTAGTAAAACTTGTCTTCAAACCAAACGACCCCTAATTGACGGACAAATATATGGTTCCATCAAGTACATCATGAGTTATTCTTGCTGTTTTTGGCTGTATCAGGATCGAAAGCCACGGGAAAGGGATCTTGAAACCTCACCAGCTACTGGCTGAGTTTGAATCAATTCAGAAAGAAGACAAAGACAAACTGAATGATCATGCCTTTGAAGAAGTCCTGAAATCCACTCAGGTAACTTGGTTTTGTTGTTAGGTTGATTATATTTAATTTTCTTACTAAGCTAACATGTGTATCTGTTTGTACTTGCATTTGAAATTTTCTTTTGCGTTGTTCGTCATACTAGGAAGCAATTGTTTTGCCCCCATGGGTTGCACTTGCTATTCGTTTGAGGCCCGGTGTGTGGGAATATGTCCGTGTGAATGTTAATGCTCTTAGTGTTGAGGAGCTGACT</genome_strand>
        <mrna_strand>AGAAACAAAAATCCTCACATCTCTTTTCATCTTTTTGCTCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTCATCTGAGGATTTGCAGGTGCAATGGCTCAACGTGTTCTAACTCGTGTTCACAGTCTTCGTGAACGTCTTGATGCCTTTTNAAANCCTTTGGATGCTCATCGCAATGAAATTTTGCTCTTTCTTTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAAAGCCACGGGAAAGGGATCTTGAAACCTCACCAGCTACTGGCTGAGTTTGAATCAATTCAGAAAGAAGACAAAGACAAACTGAATGATCATGCCTTTGAAGAAGTCCTGAAATCCACTCAG................................................................................................................GAAGCAATTGTTTTGCCCCCATGGGTTGCACTTGCTATTCGTTTGAGGCCCGGTGTTTGGGAATATGTCCGTGTGAATGTTAATGCTCTTAGTGTTGAGGAGCTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iIgfez/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324842" ref_strand="+" ref_description="SGN-U324842        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc knuckle (CCHC-type) family protein, contains Pfam domain, PF00098: Zinc knuckle | chr2:3820372-3820734 REVERSE | Aliases: F7B19.19, F7B19_19(evalue: 4e-09, score=58.5) genbank/nr: gi|53689765|gb|AAU89775.1| pol polyprotein-like [Solanum tuberosum] (evalue: 2e-102, score=374)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0121E18-fcthe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0121E18.1" temp_strand="-" temp_description="C07SLm0121E18.1  AC212655.1 htgs_phase:1 submitted_to_sgn_as:gi|158262148|gb|AC212655.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0121E18, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces">
        <position start="72652" stop="71348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72352" g_stop="71648" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="710" polyA_stop="744"/>
      <MATCH_line gen_id="C07SLm0121E18.1" gen_strand="-" ref_id="SGN-U324842" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0121E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72352" e_stop="71648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAATAGGTCACGTGGTAATTCAACAATATCTGGAGTAAATTTTGTTGAAGAAGATCCCACAAAATTAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAGCAA---TCCTAAGAAGAAATTCAATGGAAACTGCTTCAACTGTGGTAAACATGGTCATAAGGCTACTGAATGTC-GGGTCCTAAGAAGGACAAGAAAAAGAAGGACCAAGCAAACTCAGCTAAATCCAAAGGAGAAATGGACGATCTATGTGCAATGCTTTCAGAATGTAACTTGGTTAGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACCTACAGATGAGAAGTTGTTTATGGAAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAATCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGATCAAGAATGGATTCAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAGAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iIgfez/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346009" ref_strand="+" ref_description="SGN-U346009        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | kinesin motor family protein (NACK2), contains Pfam profile: PF00225 kinesin motor domain | chr3:15201922-15207156 FORWARD | Aliases: F7K15.60(evalue: 5e-84, score=307) genbank/nr: gi|19570249|dbj|BAB86284.1| kinesin-like protein NACK2 [Nicotiana tabacum](evalue: 4e-114, score=414)">
      <seq>tcatcttttccatatttgatctcagttttctctgagatggtatagaaatagttcacaaagatggtgataggcgtaccaggaacaccattgtcgaagactggaaggacaccttctcgttttccaggtagtagaaggacgattccgtcgtctactccaggaggtccaaagcttcgcgaagagaaaattcttgtgacgatacgtgtgaggcctcttagcccaaaagaacaagcagcctatgatctcattgcctgggatttccctgatcaacaaactattgtttcgaagaacttaattcatgaaagacacactggtccttattcatttgataatgtctttgacccaacgtgttcgactagcaaggtttatgaacaaggggctagagatgttgctctctctgctctaaatgggataaatgcaaccatatttgcatatggacagacaagtagtgggaagacattcacaatgaggggaataaccgagagtgctgttaatgacatttatgagcacatcaaatttactactgagagggactttgtgctgaaattttctgctttagaaatatataatgagacagtagtagacctcttgaatcgcgagtctggctcacttcgcctattggatgatccagagaaaggtattattgtagagaaactagtggaagagattgtaaaggatggccaacatctgagaaccttaattggtgcctgtgaagcccagagacaagtgggtgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0121E18-fcthe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0121E18.1" temp_strand="+" temp_description="C07SLm0121E18.1  AC212655.1 htgs_phase:1 submitted_to_sgn_as:gi|158262148|gb|AC212655.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0121E18, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces">
        <position start="88138" stop="90385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88438" g_stop="88472" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88473" i_stop="88872" i_length="400">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88873" g_stop="89162" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="325" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89163" i_stop="89245" i_length="83">
            <donor d_prob="0.497" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89246" g_stop="89335" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="415" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89336" i_stop="89429" i_length="94">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89430" g_stop="89530" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="516" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89531" i_stop="89620" i_length="90">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89621" g_stop="89734" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="630" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89735" i_stop="89825" i_length="91">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89826" g_stop="89907" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="712" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89908" i_stop="90062" i_length="155">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90063" g_stop="90085" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="735" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0121E18.1" gen_strand="+" ref_id="SGN-U346009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0121E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88438" e_stop="88472"/>
          <exon e_start="88873" e_stop="89162"/>
          <exon e_start="89246" e_stop="89335"/>
          <exon e_start="89430" e_stop="89530"/>
          <exon e_start="89621" e_stop="89734"/>
          <exon e_start="89826" e_stop="89907"/>
          <exon e_start="90063" e_stop="90085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTTTCCATATTTGATCTCAGTTTTCTCTGAGTAAGTCATTTACATTTCGTTGAAATCGCAAAATTATCGTTTGAAAATCTATTTTTTTTGGGTTTGAGCTTTACTGGTTTAAGTAATCTTTCCATATTTGATTTCACTTTACTTGCCATTTCTTGTTTATTATCTTAAAACAAACGCATAACTTCATCTGGGTTTCGTTTAATTTTTACTTGAAAATTAGATGATAATAACAAAATTGGTTTTTTTTTTCAAGATTAGCTTTTTTTTCTTGTTTAAAATTGTGGGTTTTCTTGAATGCGTTGTTTTGGTGGTTCAAGGAACTTAAGTTGATGGTTTTAGTGACTATCTTGAATTTTAGTTGGGGATTTTGGTGTATGGTTTGATAATTTCATGTTAAGAATGGGTTATTAATTTGATGGTTTTTGAATAGGATGGTATAGAAATAGTTCACAAAGATGGTGATAGGCGTACCAGGAACACCATTGTCGAAGACTGGAAGGACACCTTCTCGTTTTCCAGGTAGTAGAAGGACGATTCCGTCGTCTACTCCAGGAGGTCCAAAGCTTCGCGAAGAGAAAATTCTTGTGACGATACGTGTGAGGCCTCTTAGCCCAAAAGAACAAGCAGCCTATGATCTCATTGCCTGGGATTTCCCTGATCAACAAACTATTGTTTCGAAGAACTTAATTCATGAAAGACACACTGGTCCTTATTCATTTGGTAGGTTGATTAAATGTGAATTACTGGTTGTTGTAAGTTCTGATTTTTGAAAAATCTGCTTACATGGTTTTTTTCTGTGCCAGATAATGTCTTTGACCCAACGTGTTCGACTAGCAAGGTTTATGAACAAGGGGCTAGAGATGTTGCTCTCTCTGCTCTAAATGGGATAAATGGTAGAACTAGAGTACATTTGTTTTAGCTCTTGTATACATCATTTGGTTTATTGTTTGAAAGATTCATTCAGTTATTCTCGTACTTCTTTTGCAGCAACCATATTTGCATATGGACAGACAAGTAGTGGGAAGACATTCACAATGAGGGGAATAACCGAGAGTGCTGTTAATGACATTTATGAGCACATCAAATTTGTAAATCATACTTTCTCCAGAATCTTTTGTTGTTCTATGATTGAGAAATTGAGATGTTGATATCCGGATGCTTTTTTTTCTGCATTTCAGACTACTGAGAGGGACTTTGTGCTGAAATTTTCTGCTTTAGAAATATATAATGAGACAGTAGTAGACCTCTTGAATCGCGAGTCTGGCTCACTTCGCCTATTGGATGATCCAGAGGTACACAAGTGTCTTAGTTTAGGAGTTCAAGTTTCTTAACTAGAATTTCCTTATAAATAAATTTTCCTGAATTTTTTGTTTCTGAATGCAGAAAGGTATTATTGTAGAGAAACTAGTGGAAGAGATTGTAAAGGATGGCCAACATCTGAGAACCTTAATTGGTGCCTGTGAAGGTAAGTTGCATATTTCTTTAATGATACATTATTGCATTCATCTTATAATATCATAGAAGAATGCCGCCTTAGAAACCTCAGTATATATATTTTTGAAGTTCAGGATTTTCCTCTGACCTTGTGGTTAAATACTTGTTACTTGTTACTTGCTGCAGCCCAGAGACAAGTGGGTGAAACT</genome_strand>
        <mrna_strand>TCATCTTTTCCATATTTGATCTCAGTTTTCTCTGA................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTATAGAAATAGTTCACAAAGATGGTGATAGGCGTACCAGGAACACCATTGTCGAAGACTGGAAGGACACCTTCTCGTTTTCCAGGTAGTAGAAGGACGATTCCGTCGTCTACTCCAGGAGGTCCAAAGCTTCGCGAAGAGAAAATTCTTGTGACGATACGTGTGAGGCCTCTTAGCCCAAAAGAACAAGCAGCCTATGATCTCATTGCCTGGGATTTCCCTGATCAACAAACTATTGTTTCGAAGAACTTAATTCATGAAAGACACACTGGTCCTTATTCATTTG...................................................................................ATAATGTCTTTGACCCAACGTGTTCGACTAGCAAGGTTTATGAACAAGGGGCTAGAGATGTTGCTCTCTCTGCTCTAAATGGGATAAATG..............................................................................................CAACCATATTTGCATATGGACAGACAAGTAGTGGGAAGACATTCACAATGAGGGGAATAACCGAGAGTGCTGTTAATGACATTTATGAGCACATCAAATTT..........................................................................................ACTACTGAGAGGGACTTTGTGCTGAAATTTTCTGCTTTAGAAATATATAATGAGACAGTAGTAGACCTCTTGAATCGCGAGTCTGGCTCACTTCGCCTATTGGATGATCCAGAG...........................................................................................AAAGGTATTATTGTAGAGAAACTAGTGGAAGAGATTGTAAAGGATGGCCAACATCTGAGAACCTTAATTGGTGCCTGTGAAG...........................................................................................................................................................CCCAGAGACAAGTGGGTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iIgfez/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317255" ref_strand="+" ref_description="SGN-U317255        Tomato 200607 #1 [22 ESTs aligned] arabidopsis/peptide: | Symbol: None | eukaryotic translation initiation factor 3 subunit 11 / eIF-3 p25 / eIF3k (TIF3K1), identical to Swiss-Prot:Q9SZA3 eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) (eIF3k) (Arabidopsis thaliana); identical to cDNA initiation factor 3k GI:12407752 | chr4:16038899-16040705 REVERSE | Aliases: F17M5.10, F17M5_10(evalue: 9e-94, score=340) genbank/nr: gi|50920391|ref|XP_470556.1| Unknown protein [Oryza sativa] >gi|15217293|gb|AAK92637.1| Unknown protein [Oryza sativa] >gi|23396617|sp|Q94HF1|IF3C_ORYSA Eukaryotic translation initiation factor 3 subunit 12 (eIF-3 p25) (eIF3k) (evalue: 5e-94, score=347)">
      <seq>taaaaccttcgttcagctgtactgcaagtgcaaccccttttggctcctctcttcaccttccaatttgttcgaaagcagtcagatacagtttacaaaatggttcaagaggcgactaatggtggttccgagaagtcacagttggctatcactgtagaacagctcattgccgttaacccttacaatccagatatcctccctgatcttgaaaactatgtcaacgaacaggttttgtctcaaacatacaatctggatgcaaacctttgcctgctccgtctttatcagtttgagccggacagaatgagtacaccaattgttgctcgtattttggttaaggccttaatggcaatgccagctccagattacagcctgtgtctcttcctaatccccgaacgagtgcaaattgaagagcaattcaagacactaaatgttctgtcacacttcttagagactgcaaggttccgccaattttgggatgaagctgcaaagagccgccacattgtggaagctgtttctggttttgaacaagcaattcgagcatatgctgttcatgtcctttcaataacctaccagaaggttccaaggaccattcttgcggaggctatcaacattgagggtgtttcattggataagttccttgagcaccaagtatcgaacaacggttgggttgttgaaaaaggccagggtaagggccaactcatcacccttcctcccactgaattcaaccatccagagcttaagaaaaatactgctgatagtgttccactggagcacatcacgcgtatcttccccattcttggctgaagcctgtaattgttgcatcagtatagaatctggagtttgagagagtcatttttcatcatgaaacacatggaactgcaggtccttgcattttgtgaactctttaacagacttaggagaggtgttcttttttaaaaaaaaattactgcgagtcaatttacttttggaggatgttaaaatttactcttttctcggaaaatctataatgtagttgattttgctaattgatctgctactccattaaaaaaaaaaaaaaaaaaaaatcccgggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0121E18-fcthe/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0121E18.1" temp_strand="+" temp_description="C07SLm0121E18.1  AC212655.1 htgs_phase:1 submitted_to_sgn_as:gi|158262148|gb|AC212655.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0121E18, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces">
        <position start="108088" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108388" g_stop="108612" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108613" i_stop="108744" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108745" g_stop="108801" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="282" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108802" i_stop="108887" i_length="86">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108888" g_stop="108938" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="333" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108939" i_stop="109027" i_length="89">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109028" g_stop="109090" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="396" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109091" i_stop="110300" i_length="1210">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110301" g_stop="110351" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="447" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110352" i_stop="110427" i_length="76">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110428" g_stop="110494" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="514" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="110495" i_stop="112025" i_length="1531">
            <donor d_prob="0.749" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112026" g_stop="112108" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="597" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="112109" i_stop="112932" i_length="824">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="112933" g_stop="113359" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="1024" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1041" polyA_stop="1062"/>
      <MATCH_line gen_id="C07SLm0121E18.1" gen_strand="+" ref_id="SGN-U317255" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1024</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0121E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108388" e_stop="108612"/>
          <exon e_start="108745" e_stop="108801"/>
          <exon e_start="108888" e_stop="108938"/>
          <exon e_start="109028" e_stop="109090"/>
          <exon e_start="110301" e_stop="110351"/>
          <exon e_start="110428" e_stop="110494"/>
          <exon e_start="112026" e_stop="112108"/>
          <exon e_start="112933" e_stop="113359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCTCCGTTCAGCTGTACTGCAAGTGCAACCCCTTTTGGCTCCTCTCTTCACCTTCCAATTTGTTCGAAAGCAGTCAGATACAGTTTACAAAATGGTTCAAGAGGCGACTAATGGTGGTTCCGAGAAGTCACAGTTGGCTATCACTGTAGAACAGCTCATTGCCGTTAACCCTTACAATCCAGATATCCTCCCTGATCTTGAAAACTATGTCAACGAACAGGTACACCAATTCACCATCGTTCATCACTCCAAAAATTAATCTTTTTGTAATGGGTTGCCAACCCCTTTTCAGATTTTTGTTTCTGCTGAATTTTCCGTTGTTATTGATTGAGTAATCCCAATGTTAATTTAGGTTTTGTCTCAAACATACAATCTGGATGCAAACCTTTGCCTGCTCCGTCTTTATCAGGTTTATATCGTTATTTTGAGAATTAATCATGGAGGTTTGTTTGTTGTTTGATTTTGTTTTTTTTTTATTTGTTTGGATGTGTGCAGTTTGAGCCGGACAGAATGAGTACACCAATTGTTGCTCGTATTTTGGTTAAGGTGCAATCAAGTTCTTGTTTTGCATACTGTGATATTACTTGTTGCCTCTGTTATTATCTAACTTATTATTTGCTTGGTTGTATTGATAGGCCTTAATGGCAATGCCAGCTCCAGATTACAGCCTGTGTCTCTTCCTAATCCCCGAACGAGTGGTATATATCTCTGAAGCTGCCTTGATTATGACTTTACCTTTGATGAATATGAATTGTAAATTTTGCTAGTCTTGTGTACTCTGCTGGAAAACATAAAAACTGTCACAGCCAAAGATGTAGGTAGATTTGTTACTACCCCTATTTGTGACCAGGAATATTAGCTATTCTCAGTCATGCCTAACACAGCTTGACAGTTGTTTCATGGCTTGTGTAAAATGAAAAAGGAAGGCAGTTGATCAGATGACATAATTCTACTATAAAAATACCCCAAAAGATCTTCCTATATTTCTAAATTTTTGAATACTCATTTGTCATCTCCTGCTGTGTATCCAACTAGATTGGAGGTACATCATTTTATTTTATAGCTGGCAGTTTGGGAAGGTTGCTTTGTTGGTTCAGAAATGTCCTCGTGCTAAGTTTTGAGGAAATTAGATAAACAGGAAAGTCTGAAACAAATAAATAGATACATAGTGATGTACGATATTTGGTGTTGCTCTATATATAAACCGATATCTGCAACATAAAGGTTGTAAAACTGAGCAACAACAACATACCCCAGTGTAGTTCCACAAGTGGGGTCTGGGGAGGGTAGGATGTACACAAACCCTTACCCCTACCTTTGTGGGGTAGAGAGGTTGTTTCCCAGAAGTTCTTCATTTCCTTATGTTGGTATTCTTTAATTTCTTAGCTAGTATAGTTTCATATTTGTTAATGAAATGCATCCTATGATGTACACAACCTTACCCCCCACTTTTGTGGGGTAGAGAGGTTGTTTCCCCGTAAGTTCTCCATTTTCTTGTATTGGTGTTCTTAAATTTCTTAGCTAGTATAGTTTCCTATTTGTTAATTAAATTCATCCAAAGGGATATTGAGGAGGGTGAGGATATACATAGCTGGCCCAAACAAGATTGGGATTGAGGAACAGTTAAGGTTGTTTCCTAGAAGTTCTTCATTTCCTTTTGAGGGGCACTTTCATGTACACTCTTTTTGCTGCAACCCCCATAGACATCTATTTATTGTTGCTCAACTTTGCAAACACTTTTCGCCTTAATTTTCTTTACTGTTTCACTGGGGTTGTGGTCATTGTGGTGATTTTTTTGGGAGCAAGGCAGAATGCATGCTTTGACATCTACATATGAATCTTCAACTGTGTTAGATGCATTGCCCTATCCTTTTTTCTTCATAATGATTTTCTCATTTCATTCCTCAGCAAATTGAAGAGCAATTCAAGACACTAAATGTTCTGTCACACTTCTTAGAGGTATGCCATGTTGTGTTTGCTGAAAGTTTCTTCCAACTCTGTAGTTAACCCAACAAGTACACACATCTTTTTGCAGACTGCAAGGTTCCGCCAATTTTGGGATGAAGCTGCAAAGAGCCGCCACATTGTGGAAGCTGTTTCTGGTATTACTGAATGCTTTAATCCACCCCTCATCCACAGTGTTCAATAGTAGCAATACGGATGCAATAAGAAACCTATTTGTTATACGTAATAAGTGTCAGATTTTGCGGCAACATGCTTAAAACTGTGGAGAGAGAGACATTTTATGAAGTGATTGAGTTTCAAATCATTTCCTTGACCCTATTTATTCCAACTATTAGTAGTAAAAATTTTGTTTCAGATATAACCCATCAATATTCTTGAGTTTTTGACTACCCAAAAAAAATTCCTAGAGTGTTTCTTGTTGACAATTACACTTGGCCCCACCTATTTACAACAAAATGAATGAAGCACAGAATATAACATTCTAAACCCCTCATATTAACCACATAATCTAGGTATTATCTCCATATACTTGATCCTCTCCTTGCCCAAAATGAATGAAGTACAGCGTATAATATTTATAACCCCTCATATTAACCACATGATCTGGATATTATCTCCATATAGTGTTAATCCTCCCCTTGCCCACAATGTGCAATAGCAGTTTTGATACAATGAGAGAACCTATTTCTTTTAAAAAGAATTACATTTTTCTGGACTTGCTTGGCTTTGTGCAACAAGAGGAGTTTCATGTAGGGATTTTAAGTTTCGAACCGAGTCCTTTATTTCGTTGACAGTTTTTATTCTACTACCAACTTCGTTTCATTTTACTTGGGCCTTGTACTAAAACTAGATTTTTTTGCTTGTCCATTTTAATAAATCAAGAGAAATTTATTGTTTTCTTTCAATACTACCCTTATCATTAAATAATTGAATAAAGTAATAGTCGTCAAATTTAGATTTCCAAAGCGTAGTTAATAAGATTAGTTTAGCAAAATGAATCCGTAATAAATACTTTCTTGAGGAAGTGTCAAGTCAACATGGATCAAGTAAAATGAAACGGAGAGTAATTTTTAATAATATAAGTAGGACATTTAAGCCATTATGCACCTGACTTTTTGGCCGTGACAATATATATTTGGCCTCACTTAAATCTTGATACTGTTATAACAGCAGTTTAAGTGATATATGGTGTTTAGTATTCTCAGGCTTCTCTATTAATCACATGATCATGGCAACTTTATTTGAAAATTCTTTAATCCCCTAATTGTATTCTGTATTTGTTATTAGTTAATAAATTCCAAATTTTGATATAAAATTATTATTAACTTCCAAACTCTGTAGACGAACTGCTTTTAATGTGGCTTTTTGCATTCAAACTTCAATTTTTTTGAGTTTTCAGCAGCCAACCATTTAGTGTTTGCCTCTTTTATAGGCAAATTTAGAATGTTACAAATTCAAATTTTGTTACTTATTTGATGTAAGTGGGACAATCTTGAATAGAAACTTGGGGGAAAATGTCAGAGGATCTTCTTTATATACTTGATCCCTCTTGTATTATCCACATGTTGGCTAATTGGAATTTGTGCCATACAGTTGCCTCTATCTTAGAATTTCTTGTTTCTATAGAAAAATGAATGCTATTTATATTAAGAAAATGTTTGACTGTAGGTTTTGAACAAGCAATTCGAGCATATGCTGTTCATGTCCTTTCAATAACCTACCAGAAGGTTCCAAGGACCATTCTTGCGGAGGTATGTTTTTCTCCATGATTGCTGGTGTATTATCTATTTTGATCTTTACTTGTGCAACCACTTGAAAGAATTTGAAAGGTTCATAAATCCTAATCATTGGATGAATATATGTTCCGTAAAAAGAAGATGAAGTGTGTTAATATGAGTTTGGCTGGTCAGACTTTTGGAGAAACCAGAGGATTGGATGGTTGAAATTTCATAATTGTGTGACATACCATAGTTAAATATGGTTTATAACTTTTTGATCATTTTATACTTTTGAAAGATTATACAAAAACTTGTAAAATGTATATGCTCTATTGCATTTGCAACTCAGGTTTTTTACTGGTTCTATGCATAAAGAACTCGTTTTATTCATCGAGTTATGGTCTAGGCACACATATCCTACTTGTATTTATCTGCTGTTAGTGATAGAATGTTTTGAAGAGAAGTATCTGTTAAACTATGTGGTAAAGAATTCCCTTTCTAGAAAGAAAATGACTTCCAACTTGCATTTTCACTAAAGCATAGCAAAAATATAATTCTGAATTCATATATTGTGTTAACCTGAATCTAATGGTAAGTCGCAGAAGGGGTAGTATACTCTGTGTGAACTGTATTTGACATGCTTGTAGGTCTCTTTTTACTTGAAATCTGTATCTCAGTGTTGTTTAATAAGAAACTTTTCTTTCTTAATGGATATTTTTAATTTATTCAGAGAGAAGGAAGGAGGTTGGAATTCCAACATGCACATATTATATTGAATTTACCCTATAGTTAGTTCCCAAGTCTCTTTTATCATTATGACATGTGTTGAGCTCACTGTGTAATTGATATTGGCGCAGGCTATCAACATTGAGGGTGTTTCATTGGATAAGTTCCTTGAGCACCAAGTATCGAACAACGGTTGGGTTGTTGAAAAAGGCCAGGGTAAGGGCCAACTCATCACCCTTCCTCCCACTGAATTCAACCATCCAGAGCTTAAGAAAAATACTGCTGATAGTGTTCCACTGGAGCACATCACGCGTATCTTCCCCATTCTTGGCTGAAGCCTGTAATTGTTGCATCAGTATAGAATCTGGAGTTTGAGAGAGTCATTTTTCATCATGAAACACATGGAACTGCAGGTCCTTGCATTTTGTGAACTCTTTAACAGACTTAGGAGAGGTGTTCTTTTTTAAAAAAAAATTACTGCGAGTCAATTTACTTTTGGAGGATGTTAAAATTTACTCTTTTCTCGGAAAATCTATAATGTAGTTGATTTTGCTAATT</genome_strand>
        <mrna_strand>TAAAACCTTCGTTCAGCTGTACTGCAAGTGCAACCCCTTTTGGCTCCTCTCTTCACCTTCCAATTTGTTCGAAAGCAGTCAGATACAGTTTACAAAATGGTTCAAGAGGCGACTAATGGTGGTTCCGAGAAGTCACAGTTGGCTATCACTGTAGAACAGCTCATTGCCGTTAACCCTTACAATCCAGATATCCTCCCTGATCTTGAAAACTATGTCAACGAACAG....................................................................................................................................GTTTTGTCTCAAACATACAATCTGGATGCAAACCTTTGCCTGCTCCGTCTTTATCAG......................................................................................TTTGAGCCGGACAGAATGAGTACACCAATTGTTGCTCGTATTTTGGTTAAG.........................................................................................GCCTTAATGGCAATGCCAGCTCCAGATTACAGCCTGTGTCTCTTCCTAATCCCCGAACGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTGAAGAGCAATTCAAGACACTAAATGTTCTGTCACACTTCTTAGAG............................................................................ACTGCAAGGTTCCGCCAATTTTGGGATGAAGCTGCAAAGAGCCGCCACATTGTGGAAGCTGTTTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAACAAGCAATTCGAGCATATGCTGTTCATGTCCTTTCAATAACCTACCAGAAGGTTCCAAGGACCATTCTTGCGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATCAACATTGAGGGTGTTTCATTGGATAAGTTCCTTGAGCACCAAGTATCGAACAACGGTTGGGTTGTTGAAAAAGGCCAGGGTAAGGGCCAACTCATCACCCTTCCTCCCACTGAATTCAACCATCCAGAGCTTAAGAAAAATACTGCTGATAGTGTTCCACTGGAGCACATCACGCGTATCTTCCCCATTCTTGGCTGAAGCCTGTAATTGTTGCATCAGTATAGAATCTGGAGTTTGAGAGAGTCATTTTTCATCATGAAACACATGGAACTGCAGGTCCTTGCATTTTGTGAACTCTTTAACAGACTTAGGAGAGGTGTTCTTTTTTAAAAAAAAATTACTGCGAGTCAATTTACTTTTGGAGGATGTTAAAATTTACTCTTTTCTCGGAAAATCTATAATGTAGTTGATTTTGCTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="31822" PGL_stop="31227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31822" e_stop="31468"/>
            <exon e_start="31429" e_stop="31227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.907"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="31822" e_stop="31468" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31467" i_stop="31430" i_length="38"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="31429" e_stop="31227" e_length="203"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31822" stop="31468"/>
              <exon start="31429" stop="31227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATCCTCAACAACAATACTCCAATAAATTATATATCCGCAATAACAAGATCCATATTGATCAATCACAAGTTTCGCAGAAAGGCAATCAGAAATCAACAAAACACGATATCAAGTTCACTAATGATAAGTATGTGCAATGCAATGGAATACAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGTTGTCTCTCAGTCCGGGACCCACGGAGGACATATCTATCCATGCATCTGTCGCGGCGCACGATGCAACCCTCAATAATAGTAACCATCACGGCACGCGATACGTCCCTCGAAATATA : GTATCCATCGCAGTGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACTCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCATAATAATGCAGATGACAAGTTCACACAAATAATGAGGAGATGAGCATTTTCATAACATTGCACAGTTCACAACCACACAAACATGAAATCACATCAACAATGA</gDNA_template>
            <first_frame> Q  I  T  Y  P  Q  Q  Q  H  F  N  K  L  H  I  L  N  N  N  T  P  I  N  Y  I  S  A  I  T  R  S  I  L  I  N  H  K  F  R  R  K  A  I  R  N  Q  Q  N  T  I  S  S  S  L  M  I  S  M  C  N  A  M  E  Y  N  V  K  Y  N  D  A  C  L  T  *  *  Y  T  P  V  V  S  Q  S  G  T  H  G  G  H  I  Y  P  C  I  C  R  G  A  R  C  N  P  Q  *  *  *  P  S  R  H  A  I  R  P  S  K  Y   : S  I  H  R  S  A  R  Y  V  P  R  N  G  T  S  S  *  V  L  I  L  S  Q  C  T  *  H  L  S  Q  P  M  P  H  N  N  A  D  D  K  F  T  Q  I  M  R  R  *  A  F  S  *  H  C  T  V  H  N  H  T  N  M  K  S  H  Q  Q  * </first_frame>
            <second_frame>  K  L  H  I  L  N  N  N  T  S  T  N  Y  I  S  S  T  T  I  L  Q  *  I  I  Y  P  Q  *  Q  D  P  Y  *  S  I  T  S  F  A  E  R  Q  S  E  I  N  K  T  R  Y  Q  V  H  *  *  *  V  C  A  M  Q  W  N  T  M  S  S  I  M  M  H  V  *  P  S  D  T  H  P  L  S  L  S  P  G  P  T  E  D  I  S  I  H  A  S  V  A  A  H  D  A  T  L  N  N  S  N  H  H  G  T  R  Y  V  P  R  N  I  :  V  S  I  A  V  R  D  T  S  L  E  M  V  H  P  L  K  Y  S  F  F  L  N  A  H  N  T  C  H  N  Q  C  L  I  I  M  Q  M  T  S  S  H  K  *  *  G  D  E  H  F  H  N  I  A  Q  F  T  T  T  Q  T  *  N  H  I  N  N   </second_frame>
            <third_frame>   N  Y  I  S  S  T  T  T  L  Q  Q  I  T  Y  P  Q  Q  Q  Y  S  N  K  L  Y  I  R  N  N  K  I  H  I  D  Q  S  Q  V  S  Q  K  G  N  Q  K  S  T  K  H  D  I  K  F  T  N  D  K  Y  V  Q  C  N  G  I  Q  C  Q  V  *  *  C  M  S  D  L  V  I  H  T  R  C  L  S  V  R  D  P  R  R  T  Y  L  S  M  H  L  S  R  R  T  M  Q  P  S  I  I  V  T  I  T  A  R  D  T  S  L  E  I  * :   Y  P  S  Q  C  A  I  R  P  S  K  W  Y  I  L  L  S  T  H  S  F  S  M  H  I  T  L  V  T  T  N  A  S  *  *  C  R  *  Q  V  H  T  N  N  E  E  M  S  I  F  I  T  L  H  S  S  Q  P  H  K  H  E  I  T  S  T  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0121E18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31602" stop="31468"/>
                    <exon start="31429" stop="31298"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSDTHPLSLSPGPTEDISIHASVAAHDATLNNSNHHGTRYVPRNIVSIAVRDTSLEMVHPLKYSFFLNAHNTCHNQCLIIMQMTSSHK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0121E18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31822" stop="31598"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QITYPQQQHFNKLHILNNNTPINYISAITRSILINHKFRRKAIRNQQNTISSSLMISMCNAMEYNVKYNDACLT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0121E18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31820" stop="31617"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYISSTTTLQQITYPQQQYSNKLYIRNNKIHIDQSQVSQKGNQKSTKHDIKFTNDKYVQCNGIQCQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="62980" PGL_stop="57301"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62980" e_stop="62856"/>
            <exon e_start="61522" e_stop="61395"/>
            <exon e_start="60956" e_stop="60830"/>
            <exon e_start="60717" e_stop="60566"/>
            <exon e_start="60474" e_stop="60282"/>
            <exon e_start="60172" e_stop="59837"/>
            <exon e_start="59750" e_stop="59655"/>
            <exon e_start="59561" e_stop="59388"/>
            <exon e_start="59293" e_stop="59177"/>
            <exon e_start="59080" e_stop="58914"/>
            <exon e_start="58826" e_stop="58602"/>
            <exon e_start="58520" e_stop="57957"/>
            <exon e_start="57872" e_stop="57734"/>
            <exon e_start="57653" e_stop="57301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.785" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62980" e_stop="62856" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.785" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62855" i_stop="61523" i_length="1333"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61522" e_stop="61395" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61394" i_stop="60957" i_length="438"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60956" e_stop="60830" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="60829" i_stop="60718" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60717" e_stop="60566" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="60565" i_stop="60475" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60474" e_stop="60282" e_length="193"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.883">
            <gDNA_intron_boundary i_start="60281" i_stop="60173" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="60172" e_stop="59837" e_length="336"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.980">
            <gDNA_intron_boundary i_start="59836" i_stop="59751" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="59750" e_stop="59655" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.844" acc_prob="0.996">
            <gDNA_intron_boundary i_start="59654" i_stop="59562" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="59561" e_stop="59388" e_length="174"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59387" i_stop="59294" i_length="94"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="59293" e_stop="59177" e_length="117"/>
          </exon>
          <intron i_serial="9" don_prob="0.973" acc_prob="0.991">
            <gDNA_intron_boundary i_start="59176" i_stop="59081" i_length="96"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="59080" e_stop="58914" e_length="167"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58913" i_stop="58827" i_length="87"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="58826" e_stop="58602" e_length="225"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58601" i_stop="58521" i_length="81"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="58520" e_stop="57957" e_length="564"/>
          </exon>
          <intron i_serial="12" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57956" i_stop="57873" i_length="84"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="57872" e_stop="57734" e_length="139"/>
          </exon>
          <intron i_serial="13" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57733" i_stop="57654" i_length="80"/>
          </intron>
          <exon e_serial="14" e_score="0.960">
            <gDNA_exon_boundary e_start="57653" e_stop="57301" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62980" stop="62856"/>
              <exon start="61522" stop="61395"/>
              <exon start="60956" stop="60830"/>
              <exon start="60717" stop="60566"/>
              <exon start="60474" stop="60282"/>
              <exon start="60172" stop="59837"/>
              <exon start="59750" stop="59655"/>
              <exon start="59561" stop="59388"/>
              <exon start="59293" stop="59177"/>
              <exon start="59080" stop="58914"/>
              <exon start="58826" stop="58602"/>
              <exon start="58520" stop="57957"/>
              <exon start="57872" stop="57734"/>
              <exon start="57653" stop="57301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATACTCTTTCATTTCCATCTTTGTGTTAATTTCCTCCATCCATTACTTCCCTCTATTTATTATTATTCCTTTCAATATTCCTCTCTTTCCATTTTATTCATAAAAAATAAAAACTAAAAAAAG : TTGAAAGTCATCTGAGGATTTGCAGGTGCAATGGCTCAACGTGTTCTAACTCGTGTTCACAGTCTTCGTGAACGTCTTGATGCTACTTTGGATGCTCATCGCAATGAAATTTTGCTCTTTCTTTCAAG : GATCGAAAGCCACGGGAAAGGGATCTTGAAACCTCACCAGCTACTGGCTGAGTTTGAATCAATTCAGAAAGAAGACAAAGACAAACTGAATGATCATGCCTTTGAAGAAGTCCTGAAATCCACTCAG : GAAGCAATTGTTTTGCCCCCATGGGTTGCACTTGCTATTCGTTTGAGGCCCGGTGTGTGGGAATATGTCCGTGTGAATGTTAATGCTCTTAGTGTTGAGGAGCTGACTGTGCCTGAGTTTTTGCAATTCAAGGAAGAACTTGTTAACGGAAC : TTCCAGTGATAACTTTGTTCTTGAATTGGATTTTGAGCCCTTCACTGCATCATTTCCAAAACCAACCCTCACGAAATCAATTGGAAATGGAGTTGAATTCCTCAACAGGCACCTCTCTGCTAAAATGTTCCATGACAAGGAAAGCATGACCCCTCTTCTCGAGTTTCTTCGAGTTCACCACTACAATGGAAAG : TCAATGATGCTGAATGATAGAATTCAGAATTTGTATACTCTCCAAAAAGTCCTGAGGAAGGCCGAGGAATACCTCACCACCCTTTCGCCAGAAACTTCATACTCCTCATTTGAGCACAAGTTCCAAGAAATTGGCTTGGAGAGAGGTTGGGGTGACACCGCAGAGCGTGTTCTAGAGATGATCTGCATGCTCCTGGATCTCCTTGAGGCTCCTGACTCATGTACTCTTGAGAAGTTCCTTAGTAGAATTCCTATGGTTTTCAATGTAGTTATACTTTCACCTCATGGATATTTCGCCCAGGAAAATGTCTTGGGTTACCCCGACACTGGTGGTCAG : GTTGTCTATATTTTGGATCAAGTTCCTGCCTTGGAGCGTGAGATGCTCAAGCGCATAAAGGAGCAAGGACTTGATATCAAACCGCGTATTCTTATT : GTTACTCGGCTTCTCCCTGATGCAGTTGGTACCACTTGTGGTCAGCGACTCGAGAAGGTATTTGGAACTGAGCATTCACATATTCTTAGGGTCCCCTTTAGGACTGAAAAGGGCATTGTTCGCAAATGGATCTCTCGTTTTGAAGTCTGGCCATACATGGAGACTTTCATTGAG : GATGTGGGGAAAGAAATAACCGCAGAACTGCAAGCTAAGCCAGATCTTATTATTGGAAACTATAGTGAGGGAAACCTTGCAGCCTCCTTGTTGGCTCACAAGTTAGGTGTAACACAG : TGCACCATTGCTCATGCATTGGAGAAAACCAAATATCCTGATTCTGACATTTACTTGAACAAATTTGACGAGAAATACCACTTCTCAGCTCAGTTCACAGCTGATCTTATAGCAATGAATCATACTGATTTCATTATCACCAGCACCTTCCAGGAGATAGCAGGAAG : CAAGGACACTGTTGGACAGTATGAGAGCCACATGGCCTTCACAATGCCTGGATTGTATAGAGTTGTTCATGGCATTGATGTGTTCGACCCCAAATTCAACATTGTGTCACCAGGAGCTGATGTGAATCTCTATTTCCCATACTCCGAAAAGGAAAAGAGATTGACAACTTTTCACCCTGAAATTGAAGACTTGCTGTTTAGCGATGTTGAGAACGAAGAACACCT : GTGTGTGTTGAAGGACAGGAATAAGCCCATCATATTCACCATGGCAAGATTGGACCGAGTGAAGAACTTAACTGGACTTGTCGAGTGGTATGCTAAGAATCCACGACTAAGGGAGTTGGTTAACCTTGTAGTGGTTGGTGGAGACCGAAGAAAGGAATCCAAAGACTTGGAAGAGCAGGCAGAGATGAAGAAGATGTATGAACTTATAAAGACTCACAATTTGAATGGCCAGTTCCGATGGATTTCTTCCCAGATGAACCGCGTGAGGAATGGGGAACTCTACAGGTACATTGCTGACACAAGGGGAGCTTTCGTGCAGCCTGCATTCTACGAGGCTTTCGGTCTGACTGTTGTTGAGGCCATGAGCTGCGGTTTGCCTACATTTGCAACTAATCAAGGTGGTCCAGCTGAGATCATCGTTCATGGAAAGTCTGGTTTCCAAATTGATCCATACCATGGCGAGCAGGCTGCTGATCTCCTCGCTGAGTTCTTCGAGAAATGTAAGGTAGACCCTTCACATTGGGAAGCCATTTCCAAGGGTGGCCTTAAGCGTATACAGGAGAA : GTACACATGGCAAATCTACTCCGACCGGCTGTTGACACTAGCTGCTGTTTACGGGTTCTGGAAGCACGTTTCCAAGCTTGATCGTCTTGAAATTCGTCGTTATCTTGAGATGTTTTACGCTCTCAAATTCCGCAAGCTG : GCTGAACTTGTCCCATTGGCTGTTGAGTAAATTGACAAAGAAGAGAAGGTTTCTGTCTGATTGTTATCCACATTGTCCTTTAGAAATTGTTTGCCCCACATTTGTATCTGTTTGAGAACTTCATTGTCTTTTTCATTTGCCATTTTTCCCTTCTGTAGTCATGAAGAGGATTGCAAATTTGACATTATGTAGTGTTAGTGTGAATAAAATATCAAATTTCAATCTACTCCATCCATCCTCATATTAGAATTGAATACCGTCTCTACCTTCACAAGTTAATGACAGAAATCTATGTACGTATCAACTTCTCTCGATTTTATTTATGAGATTATACTGAGTTTGTAACATACTAG</gDNA_template>
            <first_frame> Q  Y  S  F  I  S  I  F  V  L  I  S  S  I  H  Y  F  P  L  F  I  I  I  P  F  N  I  P  L  F  P  F  Y  S  *  K  I  K  T  K  K  S :   *  K  S  S  E  D  L  Q  V  Q  W  L  N  V  F  *  L  V  F  T  V  F  V  N  V  L  M  L  L  W  M  L  I  A  M  K  F  C  S  F  F  Q   : G  S  K  A  T  G  K  G  S  *  N  L  T  S  Y  W  L  S  L  N  Q  F  R  K  K  T  K  T  N  *  M  I  M  P  L  K  K  S  *  N  P  L  R :   K  Q  L  F  C  P  H  G  L  H  L  L  F  V  *  G  P  V  C  G  N  M  S  V  *  M  L  M  L  L  V  L  R  S  *  L  C  L  S  F  C  N  S  R  K  N  L  L  T  E   : L  P  V  I  T  L  F  L  N  W  I  L  S  P  S  L  H  H  F  Q  N  Q  P  S  R  N  Q  L  E  M  E  L  N  S  S  T  G  T  S  L  L  K  C  S  M  T  R  K  A  *  P  L  F  S  S  F  F  E  F  T  T  T  M  E  S :   Q  *  C  *  M  I  E  F  R  I  C  I  L  S  K  K  S  *  G  R  P  R  N  T  S  P  P  F  R  Q  K  L  H  T  P  H  L  S  T  S  S  K  K  L  A  W  R  E  V  G  V  T  P  Q  S  V  F  *  R  *  S  A  C  S  W  I  S  L  R  L  L  T  H  V  L  L  R  S  S  L  V  E  F  L  W  F  S  M  *  L  Y  F  H  L  M  D  I  S  P  R  K  M  S  W  V  T  P  T  L  V  V  R :   L  S  I  F  W  I  K  F  L  P  W  S  V  R  C  S  S  A  *  R  S  K  D  L  I  S  N  R  V  F  L  L :   L  L  G  F  S  L  M  Q  L  V  P  L  V  V  S  D  S  R  R  Y  L  E  L  S  I  H  I  F  L  G  S  P  L  G  L  K  R  A  L  F  A  N  G  S  L  V  L  K  S  G  H  T  W  R  L  S  L  R :   M  W  G  K  K  *  P  Q  N  C  K  L  S  Q  I  L  L  L  E  T  I  V  R  E  T  L  Q  P  P  C  W  L  T  S  *  V  *  H  S :   A  P  L  L  M  H  W  R  K  P  N  I  L  I  L  T  F  T  *  T  N  L  T  R  N  T  T  S  Q  L  S  S  Q  L  I  L  *  Q  *  I  I  L  I  S  L  S  P  A  P  S  R  R  *  Q  E   : A  R  T  L  L  D  S  M  R  A  T  W  P  S  Q  C  L  D  C  I  E  L  F  M  A  L  M  C  S  T  P  N  S  T  L  C  H  Q  E  L  M  *  I  S  I  S  H  T  P  K  R  K  R  D  *  Q  L  F  T  L  K  L  K  T  C  C  L  A  M  L  R  T  K  N  T   : C  V  C  *  R  T  G  I  S  P  S  Y  S  P  W  Q  D  W  T  E  *  R  T  *  L  D  L  S  S  G  M  L  R  I  H  D  *  G  S  W  L  T  L  *  W  L  V  E  T  E  E  R  N  P  K  T  W  K  S  R  Q  R  *  R  R  C  M  N  L  *  R  L  T  I  *  M  A  S  S  D  G  F  L  P  R  *  T  A  *  G  M  G  N  S  T  G  T  L  L  T  Q  G  E  L  S  C  S  L  H  S  T  R  L  S  V  *  L  L  L  R  P  *  A  A  V  C  L  H  L  Q  L  I  K  V  V  Q  L  R  S  S  F  M  E  S  L  V  S  K  L  I  H  T  M  A  S  R  L  L  I  S  S  L  S  S  S  R  N  V  R  *  T  L  H  I  G  K  P  F  P  R  V  A  L  S  V  Y  R  R   : S  T  H  G  K  S  T  P  T  G  C  *  H  *  L  L  F  T  G  S  G  S  T  F  P  S  L  I  V  L  K  F  V  V  I  L  R  C  F  T  L  S  N  S  A  S  W :   L  N  L  S  H  W  L  L  S  K  L  T  K  K  R  R  F  L  S  D  C  Y  P  H  C  P  L  E  I  V  C  P  T  F  V  S  V  *  E  L  H  C  L  F  H  L  P  F  F  P  S  V  V  M  K  R  I  A  N  L  T  L  C  S  V  S  V  N  K  I  S  N  F  N  L  L  H  P  S  S  Y  *  N  *  I  P  S  L  P  S  Q  V  N  D  R  N  L  C  T  Y  Q  L  L  S  I  L  F  M  R  L  Y  *  V  C  N  I  L  </first_frame>
            <second_frame>  N  T  L  S  F  P  S  L  C  *  F  P  P  S  I  T  S  L  Y  L  L  L  F  L  S  I  F  L  S  F  H  F  I  H  K  K  *  K  L  K  K   : V  E  S  H  L  R  I  C  R  C  N  G  S  T  C  S  N  S  C  S  Q  S  S  *  T  S  *  C  Y  F  G  C  S  S  Q  *  N  F  A  L  S  F  K  :  D  R  K  P  R  E  R  D  L  E  T  S  P  A  T  G  *  V  *  I  N  S  E  R  R  Q  R  Q  T  E  *  S  C  L  *  R  S  P  E  I  H  S   : G  S  N  C  F  A  P  M  G  C  T  C  Y  S  F  E  A  R  C  V  G  I  C  P  C  E  C  *  C  S  *  C  *  G  A  D  C  A  *  V  F  A  I  Q  G  R  T  C  *  R  N  :  F  Q  *  *  L  C  S  *  I  G  F  *  A  L  H  C  I  I  S  K  T  N  P  H  E  I  N  W  K  W  S  *  I  P  Q  Q  A  P  L  C  *  N  V  P  *  Q  G  K  H  D  P  S  S  R  V  S  S  S  S  P  L  Q  W  K   : V  N  D  A  E  *  *  N  S  E  F  V  Y  S  P  K  S  P  E  E  G  R  G  I  P  H  H  P  F  A  R  N  F  I  L  L  I  *  A  Q  V  P  R  N  W  L  G  E  R  L  G  *  H  R  R  A  C  S  R  D  D  L  H  A  P  G  S  P  *  G  S  *  L  M  Y  S  *  E  V  P  *  *  N  S  Y  G  F  Q  C  S  Y  T  F  T  S  W  I  F  R  P  G  K  C  L  G  L  P  R  H  W  W  S   : G  C  L  Y  F  G  S  S  S  C  L  G  A  *  D  A  Q  A  H  K  G  A  R  T  *  Y  Q  T  A  Y  S  Y   : C  Y  S  A  S  P  *  C  S  W  Y  H  L  W  S  A  T  R  E  G  I  W  N  *  A  F  T  Y  S  *  G  P  L  *  D  *  K  G  H  C  S  Q  M  D  L  S  F  *  S  L  A  I  H  G  D  F  H  *   : G  C  G  E  R  N  N  R  R  T  A  S  *  A  R  S  Y  Y  W  K  L  *  *  G  K  P  C  S  L  L  V  G  S  Q  V  R  C  N  T   : V  H  H  C  S  C  I  G  E  N  Q  I  S  *  F  *  H  L  L  E  Q  I  *  R  E  I  P  L  L  S  S  V  H  S  *  S  Y  S  N  E  S  Y  *  F  H  Y  H  Q  H  L  P  G  D  S  R  K  :  Q  G  H  C  W  T  V  *  E  P  H  G  L  H  N  A  W  I  V  *  S  C  S  W  H  *  C  V  R  P  Q  I  Q  H  C  V  T  R  S  *  C  E  S  L  F  P  I  L  R  K  G  K  E  I  D  N  F  S  P  *  N  *  R  L  A  V  *  R  C  *  E  R  R  T  P  :  V  C  V  E  G  Q  E  *  A  H  H  I  H  H  G  K  I  G  P  S  E  E  L  N  W  T  C  R  V  V  C  *  E  S  T  T  K  G  V  G  *  P  C  S  G  W  W  R  P  K  K  G  I  Q  R  L  G  R  A  G  R  D  E  E  D  V  *  T  Y  K  D  S  Q  F  E  W  P  V  P  M  D  F  F  P  D  E  P  R  E  E  W  G  T  L  Q  V  H  C  *  H  K  G  S  F  R  A  A  C  I  L  R  G  F  R  S  D  C  C  *  G  H  E  L  R  F  A  Y  I  C  N  *  S  R  W  S  S  *  D  H  R  S  W  K  V  W  F  P  N  *  S  I  P  W  R  A  G  C  *  S  P  R  *  V  L  R  E  M  *  G  R  P  F  T  L  G  S  H  F  Q  G  W  P  *  A  Y  T  G  E  :  V  H  M  A  N  L  L  R  P  A  V  D  T  S  C  C  L  R  V  L  E  A  R  F  Q  A  *  S  S  *  N  S  S  L  S  *  D  V  L  R  S  Q  I  P  Q  A   : G  *  T  C  P  I  G  C  *  V  N  *  Q  R  R  E  G  F  C  L  I  V  I  H  I  V  L  *  K  L  F  A  P  H  L  Y  L  F  E  N  F  I  V  F  F  I  C  H  F  S  L  L  *  S  *  R  G  L  Q  I  *  H  Y  V  V  L  V  *  I  K  Y  Q  I  S  I  Y  S  I  H  P  H  I  R  I  E  Y  R  L  Y  L  H  K  L  M  T  E  I  Y  V  R  I  N  F  S  R  F  Y  L  *  D  Y  T  E  F  V  T  Y  * </second_frame>
            <third_frame>   I  L  F  H  F  H  L  C  V  N  F  L  H  P  L  L  P  S  I  Y  Y  Y  S  F  Q  Y  S  S  L  S  I  L  F  I  K  N  K  N  *  K  K  :  L  K  V  I  *  G  F  A  G  A  M  A  Q  R  V  L  T  R  V  H  S  L  R  E  R  L  D  A  T  L  D  A  H  R  N  E  I  L  L  F  L  S  R :   I  E  S  H  G  K  G  I  L  K  P  H  Q  L  L  A  E  F  E  S  I  Q  K  E  D  K  D  K  L  N  D  H  A  F  E  E  V  L  K  S  T  Q  :  E  A  I  V  L  P  P  W  V  A  L  A  I  R  L  R  P  G  V  W  E  Y  V  R  V  N  V  N  A  L  S  V  E  E  L  T  V  P  E  F  L  Q  F  K  E  E  L  V  N  G  T :   S  S  D  N  F  V  L  E  L  D  F  E  P  F  T  A  S  F  P  K  P  T  L  T  K  S  I  G  N  G  V  E  F  L  N  R  H  L  S  A  K  M  F  H  D  K  E  S  M  T  P  L  L  E  F  L  R  V  H  H  Y  N  G  K  :  S  M  M  L  N  D  R  I  Q  N  L  Y  T  L  Q  K  V  L  R  K  A  E  E  Y  L  T  T  L  S  P  E  T  S  Y  S  S  F  E  H  K  F  Q  E  I  G  L  E  R  G  W  G  D  T  A  E  R  V  L  E  M  I  C  M  L  L  D  L  L  E  A  P  D  S  C  T  L  E  K  F  L  S  R  I  P  M  V  F  N  V  V  I  L  S  P  H  G  Y  F  A  Q  E  N  V  L  G  Y  P  D  T  G  G  Q  :  V  V  Y  I  L  D  Q  V  P  A  L  E  R  E  M  L  K  R  I  K  E  Q  G  L  D  I  K  P  R  I  L  I  :  V  T  R  L  L  P  D  A  V  G  T  T  C  G  Q  R  L  E  K  V  F  G  T  E  H  S  H  I  L  R  V  P  F  R  T  E  K  G  I  V  R  K  W  I  S  R  F  E  V  W  P  Y  M  E  T  F  I  E  :  D  V  G  K  E  I  T  A  E  L  Q  A  K  P  D  L  I  I  G  N  Y  S  E  G  N  L  A  A  S  L  L  A  H  K  L  G  V  T  Q  :  C  T  I  A  H  A  L  E  K  T  K  Y  P  D  S  D  I  Y  L  N  K  F  D  E  K  Y  H  F  S  A  Q  F  T  A  D  L  I  A  M  N  H  T  D  F  I  I  T  S  T  F  Q  E  I  A  G  S :   K  D  T  V  G  Q  Y  E  S  H  M  A  F  T  M  P  G  L  Y  R  V  V  H  G  I  D  V  F  D  P  K  F  N  I  V  S  P  G  A  D  V  N  L  Y  F  P  Y  S  E  K  E  K  R  L  T  T  F  H  P  E  I  E  D  L  L  F  S  D  V  E  N  E  E  H  L :   C  V  L  K  D  R  N  K  P  I  I  F  T  M  A  R  L  D  R  V  K  N  L  T  G  L  V  E  W  Y  A  K  N  P  R  L  R  E  L  V  N  L  V  V  V  G  G  D  R  R  K  E  S  K  D  L  E  E  Q  A  E  M  K  K  M  Y  E  L  I  K  T  H  N  L  N  G  Q  F  R  W  I  S  S  Q  M  N  R  V  R  N  G  E  L  Y  R  Y  I  A  D  T  R  G  A  F  V  Q  P  A  F  Y  E  A  F  G  L  T  V  V  E  A  M  S  C  G  L  P  T  F  A  T  N  Q  G  G  P  A  E  I  I  V  H  G  K  S  G  F  Q  I  D  P  Y  H  G  E  Q  A  A  D  L  L  A  E  F  F  E  K  C  K  V  D  P  S  H  W  E  A  I  S  K  G  G  L  K  R  I  Q  E  K :   Y  T  W  Q  I  Y  S  D  R  L  L  T  L  A  A  V  Y  G  F  W  K  H  V  S  K  L  D  R  L  E  I  R  R  Y  L  E  M  F  Y  A  L  K  F  R  K  L  :  A  E  L  V  P  L  A  V  E  *  I  D  K  E  E  K  V  S  V  *  L  L  S  T  L  S  F  R  N  C  L  P  H  I  C  I  C  L  R  T  S  L  S  F  S  F  A  I  F  P  F  C  S  H  E  E  D  C  K  F  D  I  M  *  C  *  C  E  *  N  I  K  F  Q  S  T  P  S  I  L  I  L  E  L  N  T  V  S  T  F  T  S  *  *  Q  K  S  M  Y  V  S  T  S  L  D  F  I  Y  E  I  I  L  S  L  *  H  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0121E18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61507" stop="61395"/>
                    <exon start="60956" stop="60830"/>
                    <exon start="60717" stop="60566"/>
                    <exon start="60474" stop="60282"/>
                    <exon start="60172" stop="59837"/>
                    <exon start="59750" stop="59655"/>
                    <exon start="59561" stop="59388"/>
                    <exon start="59293" stop="59177"/>
                    <exon start="59080" stop="58914"/>
                    <exon start="58826" stop="58602"/>
                    <exon start="58520" stop="57957"/>
                    <exon start="57872" stop="57734"/>
                    <exon start="57653" stop="57624"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2430</number_coding_nucleotides>
                  <number_encoded_amino_acids>810</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFAGAMAQRVLTRVHSLRERLDATLDAHRNEILLFLSRIESHGKGILKPHQLLAEFESIQKEDKDKLNDHAFEEVLKSTQEAIVLPPWVALAIRLRPGVWEYVRVNVNALSVEELTVPEFLQFKEELVNGTSSDNFVLELDFEPFTASFPKPTLTKSIGNGVEFLNRHLSAKMFHDKESMTPLLEFLRVHHYNGKSMMLNDRIQNLYTLQKVLRKAEEYLTTLSPETSYSSFEHKFQEIGLERGWGDTAERVLEMICMLLDLLEAPDSCTLEKFLSRIPMVFNVVILSPHGYFAQENVLGYPDTGGQVVYILDQVPALEREMLKRIKEQGLDIKPRILIVTRLLPDAVGTTCGQRLEKVFGTEHSHILRVPFRTEKGIVRKWISRFEVWPYMETFIEDVGKEITAELQAKPDLIIGNYSEGNLAASLLAHKLGVTQCTIAHALEKTKYPDSDIYLNKFDEKYHFSAQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHMAFTMPGLYRVVHGIDVFDPKFNIVSPGADVNLYFPYSEKEKRLTTFHPEIEDLLFSDVENEEHLCVLKDRNKPIIFTMARLDRVKNLTGLVEWYAKNPRLRELVNLVVVGGDRRKESKDLEEQAEMKKMYELIKTHNLNGQFRWISSQMNRVRNGELYRYIADTRGAFVQPAFYEAFGLTVVEAMSCGLPTFATNQGGPAEIIVHGKSGFQIDPYHGEQAADLLAEFFEKCKVDPSHWEAISKGGLKRIQEKYTWQIYSDRLLTLAAVYGFWKHVSKLDRLEIRRYLEMFYALKFRKLAELVPLAVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58786" e_stop="58126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="58786" e_stop="58126" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58786" stop="58126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAATGCCTGGATTGTATAGAGTTGTTCATGGCATTGATGTGTTCGACCCCAAATTCAACATTGTGTCACCAGGAGCTGATGTGAATCTCTATTTCCCATACTCCGAAAAGGAAAAGAGATTGACAACTTTTCACCCTGAAATTGAAGACTTGCTGTTTAGCGATGTTGAGAACGAAGAACACCTGTATGTTTCTATAATAGTGCAACATTGTGTTTACTGATATAAACAAGCTTGTACTGAAATAGATTTGTGTTCCTATATCAGGTGTGTGTTGAAGGACAGGAATAAGCCCATCATATTCACCATGGCAAGATTGGACCGAGTGAAGAACTTAACTGGACTTGTCGAGTGGTATGCTAAGAATCCACGACTAAGGGAGTTGGTTAACCTTGTAGTGGTTGGTGGAGACCGAAGAAAGGAATCCAAAGACTTGGAAGAGCAGGCAGAGATGAAGAAGATGTATGAACTTATAAAGACTCACAATTTGAATGGCCAGTTCCGATGGATTTCTTCCCAGATGAACCGCGTGAGGAATGGGGAACTCTACAGGTACATTGCTGACACAAGGGGAGCTTTCGTGCAGCCTGCATTCTACGAGGCTTTCGGTCTGACTGTTGTTGAGGCCATGAGCTGCGGTTTGCCTACATTTGCAACTAATC</gDNA_template>
            <first_frame> T  M  P  G  L  Y  R  V  V  H  G  I  D  V  F  D  P  K  F  N  I  V  S  P  G  A  D  V  N  L  Y  F  P  Y  S  E  K  E  K  R  L  T  T  F  H  P  E  I  E  D  L  L  F  S  D  V  E  N  E  E  H  L  Y  V  S  I  I  V  Q  H  C  V  Y  *  Y  K  Q  A  C  T  E  I  D  L  C  S  Y  I  R  C  V  L  K  D  R  N  K  P  I  I  F  T  M  A  R  L  D  R  V  K  N  L  T  G  L  V  E  W  Y  A  K  N  P  R  L  R  E  L  V  N  L  V  V  V  G  G  D  R  R  K  E  S  K  D  L  E  E  Q  A  E  M  K  K  M  Y  E  L  I  K  T  H  N  L  N  G  Q  F  R  W  I  S  S  Q  M  N  R  V  R  N  G  E  L  Y  R  Y  I  A  D  T  R  G  A  F  V  Q  P  A  F  Y  E  A  F  G  L  T  V  V  E  A  M  S  C  G  L  P  T  F  A  T  N  </first_frame>
            <second_frame>  Q  C  L  D  C  I  E  L  F  M  A  L  M  C  S  T  P  N  S  T  L  C  H  Q  E  L  M  *  I  S  I  S  H  T  P  K  R  K  R  D  *  Q  L  F  T  L  K  L  K  T  C  C  L  A  M  L  R  T  K  N  T  C  M  F  L  *  *  C  N  I  V  F  T  D  I  N  K  L  V  L  K  *  I  C  V  P  I  S  G  V  C  *  R  T  G  I  S  P  S  Y  S  P  W  Q  D  W  T  E  *  R  T  *  L  D  L  S  S  G  M  L  R  I  H  D  *  G  S  W  L  T  L  *  W  L  V  E  T  E  E  R  N  P  K  T  W  K  S  R  Q  R  *  R  R  C  M  N  L  *  R  L  T  I  *  M  A  S  S  D  G  F  L  P  R  *  T  A  *  G  M  G  N  S  T  G  T  L  L  T  Q  G  E  L  S  C  S  L  H  S  T  R  L  S  V  *  L  L  L  R  P  *  A  A  V  C  L  H  L  Q  L  I </second_frame>
            <third_frame>   N  A  W  I  V  *  S  C  S  W  H  *  C  V  R  P  Q  I  Q  H  C  V  T  R  S  *  C  E  S  L  F  P  I  L  R  K  G  K  E  I  D  N  F  S  P  *  N  *  R  L  A  V  *  R  C  *  E  R  R  T  P  V  C  F  Y  N  S  A  T  L  C  L  L  I  *  T  S  L  Y  *  N  R  F  V  F  L  Y  Q  V  C  V  E  G  Q  E  *  A  H  H  I  H  H  G  K  I  G  P  S  E  E  L  N  W  T  C  R  V  V  C  *  E  S  T  T  K  G  V  G  *  P  C  S  G  W  W  R  P  K  K  G  I  Q  R  L  G  R  A  G  R  D  E  E  D  V  *  T  Y  K  D  S  Q  F  E  W  P  V  P  M  D  F  F  P  D  E  P  R  E  E  W  G  T  L  Q  V  H  C  *  H  K  G  S  F  R  A  A  C  I  L  R  G  F  R  S  D  C  C  *  G  H  E  L  R  F  A  Y  I  C  N  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0121E18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58564" stop="58127"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKQACTEIDLCSYIRCVLKDRNKPIIFTMARLDRVKNLTGLVEWYAKNPRLRELVNLVVVGGDRRKESKDLEEQAEMKKMYELIKTHNLNGQFRWISSQMNRVRNGELYRYIADTRGAFVQPAFYEAFGLTVVEAMSCGLPTFATN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0121E18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58786" stop="58565"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMPGLYRVVHGIDVFDPKFNIVSPGADVNLYFPYSEKEKRLTTFHPEIEDLLFSDVENEEHLYVSIIVQHCVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="61794" e_stop="61395"/>
            <exon e_start="60956" e_stop="60830"/>
            <exon e_start="60717" e_stop="60606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="0.984"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="61794" e_stop="61395" e_length="400"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61394" i_stop="60957" i_length="438"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="60956" e_stop="60830" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="60829" i_stop="60718" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="60717" e_stop="60606" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61794" stop="61395"/>
              <exon start="60956" stop="60830"/>
              <exon start="60717" stop="60606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTGATGAATTAAAATAAAAAATTTATGATTTTAAATTATCAGTTAGATATTTGAATTGAAAAAACTTATAAAATATAAAAAATACTTTTTTTTTTTGGAAAATATAGTAGAGCTAGGTGGGGTTGAAAATTTGTGCTAGTATATTCTAGATAATTGGAAAATTAGGTGATTAATTAGGTGACACGATCTCATCTCTTTGAATAGCAGTAATGTGCTAAAATATTTTTATGATTTTTGAGTTAACAGTATTTTGTTTGTTTATTTTTACAGTTGAAAGTCATCTGAGGATTTGCAGGTGCAATGGCTCAACGTGTTCTAACTCGTGTTCACAGTCTTCGTGAACGTCTTGATGCTACTTTGGATGCTCATCGCAATGAAATTTTGCTCTTTCTTTCAAG : GATCGAAAGCCACGGGAAAGGGATCTTGAAACCTCACCAGCTACTGGCTGAGTTTGAATCAATTCAGAAAGAAGACAAAGACAAACTGAATGATCATGCCTTTGAAGAAGTCCTGAAATCCACTCAG : GAAGCAATTGTTTTGCCCCCATGGGTTGCACTTGCTATTCGTTTGAGGCCCGGTGTGTGGGAATATGTCCGTGTGAATGTTAATGCTCTTAGTGTTGAGGAGCTGACTGTGC</gDNA_template>
            <first_frame> S  *  *  I  K  I  K  N  L  *  F  *  I  I  S  *  I  F  E  L  K  K  L  I  K  Y  K  K  Y  F  F  F  L  E  N  I  V  E  L  G  G  V  E  N  L  C  *  Y  I  L  D  N  W  K  I  R  *  L  I  R  *  H  D  L  I  S  L  N  S  S  N  V  L  K  Y  F  Y  D  F  *  V  N  S  I  L  F  V  Y  F  Y  S  *  K  S  S  E  D  L  Q  V  Q  W  L  N  V  F  *  L  V  F  T  V  F  V  N  V  L  M  L  L  W  M  L  I  A  M  K  F  C  S  F  F  Q   : G  S  K  A  T  G  K  G  S  *  N  L  T  S  Y  W  L  S  L  N  Q  F  R  K  K  T  K  T  N  *  M  I  M  P  L  K  K  S  *  N  P  L  R :   K  Q  L  F  C  P  H  G  L  H  L  L  F  V  *  G  P  V  C  G  N  M  S  V  *  M  L  M  L  L  V  L  R  S  *  L  C </first_frame>
            <second_frame>  V  D  E  L  K  *  K  I  Y  D  F  K  L  S  V  R  Y  L  N  *  K  N  L  *  N  I  K  N  T  F  F  F  W  K  I  *  *  S  *  V  G  L  K  I  C  A  S  I  F  *  I  I  G  K  L  G  D  *  L  G  D  T  I  S  S  L  *  I  A  V  M  C  *  N  I  F  M  I  F  E  L  T  V  F  C  L  F  I  F  T  V  E  S  H  L  R  I  C  R  C  N  G  S  T  C  S  N  S  C  S  Q  S  S  *  T  S  *  C  Y  F  G  C  S  S  Q  *  N  F  A  L  S  F  K  :  D  R  K  P  R  E  R  D  L  E  T  S  P  A  T  G  *  V  *  I  N  S  E  R  R  Q  R  Q  T  E  *  S  C  L  *  R  S  P  E  I  H  S   : G  S  N  C  F  A  P  M  G  C  T  C  Y  S  F  E  A  R  C  V  G  I  C  P  C  E  C  *  C  S  *  C  *  G  A  D  C   </second_frame>
            <third_frame>   L  M  N  *  N  K  K  F  M  I  L  N  Y  Q  L  D  I  *  I  E  K  T  Y  K  I  *  K  I  L  F  F  F  G  K  Y  S  R  A  R  W  G  *  K  F  V  L  V  Y  S  R  *  L  E  N  *  V  I  N  *  V  T  R  S  H  L  F  E  *  Q  *  C  A  K  I  F  L  *  F  L  S  *  Q  Y  F  V  C  L  F  L  Q  L  K  V  I  *  G  F  A  G  A  M  A  Q  R  V  L  T  R  V  H  S  L  R  E  R  L  D  A  T  L  D  A  H  R  N  E  I  L  L  F  L  S  R :   I  E  S  H  G  K  G  I  L  K  P  H  Q  L  L  A  E  F  E  S  I  Q  K  E  D  K  D  K  L  N  D  H  A  F  E  E  V  L  K  S  T  Q  :  E  A  I  V  L  P  P  W  V  A  L  A  I  R  L  R  P  G  V  W  E  Y  V  R  V  N  V  N  A  L  S  V  E  E  L  T  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0121E18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61507" stop="61395"/>
                    <exon start="60956" stop="60830"/>
                    <exon start="60717" stop="60607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFAGAMAQRVLTRVHSLRERLDATLDAHRNEILLFLSRIESHGKGILKPHQLLAEFESIQKEDKDKLNDHAFEEVLKSTQEAIVLPPWVALAIRLRPGVWEYVRVNVNALSVEELTV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="62486" e_stop="62446"/>
            <exon e_start="61522" e_stop="61395"/>
            <exon e_start="60956" e_stop="60830"/>
            <exon e_start="60717" e_stop="60610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="0.951"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.859"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="62486" e_stop="62446" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62445" i_stop="61523" i_length="923"/>
          </intron>
          <exon e_serial="2" e_score="0.859">
            <gDNA_exon_boundary e_start="61522" e_stop="61395" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61394" i_stop="60957" i_length="438"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60956" e_stop="60830" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="60829" i_stop="60718" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="60717" e_stop="60610" e_length="108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62486" stop="62446"/>
              <exon start="61522" stop="61395"/>
              <exon start="60956" stop="60830"/>
              <exon start="60717" stop="60610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333918" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAACAAAAATCCTCACATCTCTTTTCATCTTTTTCTCCT : TTGAAAGTCATCTGAGGATTTGCAGGTGCAATGGCTCAACGTGTTCTAACTCGTGTTCACAGTCTTCGTGAACGTCTTGATGCTACTTTGGATGCTCATCGCAATGAAATTTTGCTCTTTCTTTCAAG : GATCGAAAGCCACGGGAAAGGGATCTTGAAACCTCACCAGCTACTGGCTGAGTTTGAATCAATTCAGAAAGAAGACAAAGACAAACTGAATGATCATGCCTTTGAAGAAGTCCTGAAATCCACTCAG : GAAGCAATTGTTTTGCCCCCATGGGTTGCACTTGCTATTCGTTTGAGGCCCGGTGTGTGGGAATATGTCCGTGTGAATGTTAATGCTCTTAGTGTTGAGGAGCTGACT</gDNA_template>
            <first_frame> R  N  K  N  P  H  I  S  F  H  L  F  L  L :   *  K  S  S  E  D  L  Q  V  Q  W  L  N  V  F  *  L  V  F  T  V  F  V  N  V  L  M  L  L  W  M  L  I  A  M  K  F  C  S  F  F  Q   : G  S  K  A  T  G  K  G  S  *  N  L  T  S  Y  W  L  S  L  N  Q  F  R  K  K  T  K  T  N  *  M  I  M  P  L  K  K  S  *  N  P  L  R :   K  Q  L  F  C  P  H  G  L  H  L  L  F  V  *  G  P  V  C  G  N  M  S  V  *  M  L  M  L  L  V  L  R  S  *   </first_frame>
            <second_frame>  E  T  K  I  L  T  S  L  F  I  F  F  S   : F  E  S  H  L  R  I  C  R  C  N  G  S  T  C  S  N  S  C  S  Q  S  S  *  T  S  *  C  Y  F  G  C  S  S  Q  *  N  F  A  L  S  F  K  :  D  R  K  P  R  E  R  D  L  E  T  S  P  A  T  G  *  V  *  I  N  S  E  R  R  Q  R  Q  T  E  *  S  C  L  *  R  S  P  E  I  H  S   : G  S  N  C  F  A  P  M  G  C  T  C  Y  S  F  E  A  R  C  V  G  I  C  P  C  E  C  *  C  S  *  C  *  G  A  D  </second_frame>
            <third_frame>   K  Q  K  S  S  H  L  F  S  S  F  S  P  :  L  K  V  I  *  G  F  A  G  A  M  A  Q  R  V  L  T  R  V  H  S  L  R  E  R  L  D  A  T  L  D  A  H  R  N  E  I  L  L  F  L  S  R :   I  E  S  H  G  K  G  I  L  K  P  H  Q  L  L  A  E  F  E  S  I  Q  K  E  D  K  D  K  L  N  D  H  A  F  E  E  V  L  K  S  T  Q  :  E  A  I  V  L  P  P  W  V  A  L  A  I  R  L  R  P  G  V  W  E  Y  V  R  V  N  V  N  A  L  S  V  E  E  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0121E18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61507" stop="61395"/>
                    <exon start="60956" stop="60830"/>
                    <exon start="60717" stop="60610"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFAGAMAQRVLTRVHSLRERLDATLDAHRNEILLFLSRIESHGKGILKPHQLLAEFESIQKEDKDKLNDHAFEEVLKSTQEAIVLPPWVALAIRLRPGVWEYVRVNVNALSVEELT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="72352" PGL_stop="71648"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72352" e_stop="71648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="72352" e_stop="71648" e_length="705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72352" stop="71648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAATAGGTCACGTGGTAATTCAACAATATCTGGAGTAAATTTTGTTGAAGAAGATCCCACAAAATTAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAGCAATCCTAAGAAGAAATTCAATGGAAACTGCTTCAACTGTGGTAAACATGGTCATAAGGCTACTGAATGTCGGGTCCTAAGAAGGACAAGAAAAAGAAGGACCAAGCAAACTCAGCTAAATCCAAAGGAGAAATGGACGATCTATGTGCAATGCTTTCAGAATGTAACTTGGTTAGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACCTACAGATGAGAAGTTGTTTATGGAAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAATCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGATCAAGAATGGATTCAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAGAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</gDNA_template>
            <first_frame> *  G  *  E  S  K  R  I  I  R  L  Q  K  I  G  H  V  V  I  Q  Q  Y  L  E  *  I  L  L  K  K  I  P  Q  N  *  R  K  E  R  K  H  L  V  Q  K  A  I  L  R  R  N  S  M  E  T  A  S  T  V  V  N  M  V  I  R  L  L  N  V  G  S  *  E  G  Q  E  K  E  G  P  S  K  L  S  *  I  Q  R  R  N  G  R  S  M  C  N  A  F  R  M  *  L  G  *  K  S  K  R  M  V  D  R  F  W  C  L  M  P  C  L  C  Q  Q  R  I  I  F  I  I  Y  S  S  T  Y  R  *  E  V  V  Y  G  K  L  R  C  C  K  G  G  R  N  W  Q  N  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  S  S  D  Q  E  W  I  Q  M  C  I  C  F  *  *  S  S  S  K  Q  E  *  Y  V  C  R  K  R  L  P  *  *  W  P  F  Q  T  Q  C  N  C  S  *  Y  E  *  R  F  C  F  F  L </first_frame>
            <second_frame>  K  V  E  N  R  R  G  *  *  G  C  R  K  *  V  T  W  *  F  N  N  I  W  S  K  F  C  *  R  R  S  H  K  I  K  E  K  K  E  S  I  W  S  K  K  Q  S  *  E  E  I  Q  W  K  L  L  Q  L  W  *  T  W  S  *  G  Y  *  M  S  G  P  K  K  D  K  K  K  K  D  Q  A  N  S  A  K  S  K  G  E  M  D  D  L  C  A  M  L  S  E  C  N  L  V  R  N  P  R  E  W  W  I  D  S  G  A  S  C  H  V  C  A  N  K  E  L  F  S  S  Y  T  L  A  P  T  D  E  K  L  F  M  E  N  S  A  V  A  K  V  E  G  T  G  K  I  L  L  K  M  T  S  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  V  L  I  K  N  G  F  K  C  V  F  V  F  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  G  L  F  K  L  N  V  I  A  V  D  M  N  K  D  F  A  S  S   </second_frame>
            <third_frame>   R  L  R  I  E  E  D  N  K  A  A  E  N  R  S  R  G  N  S  T  I  S  G  V  N  F  V  E  E  D  P  T  K  L  K  K  R  K  K  A  S  G  P  K  S  N  P  K  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  K  A  T  E  C  R  V  L  R  R  T  R  K  R  R  T  K  Q  T  Q  L  N  P  K  E  K  W  T  I  Y  V  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  A  M  F  V  P  T  K  N  Y  F  H  H  I  L  *  H  L  Q  M  R  S  C  L  W  K  T  P  L  L  Q  R  W  K  E  L  A  K  S  Y  *  R  *  H  Q  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  *  S  R  M  D  S  N  V  Y  L  F  L  I  K  *  *  *  A  R  M  I  C  M  *  E  K  A  T  L  V  M  A  F  S  N  S  M  *  L  Q  L  I  *  I  K  I  L  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0121E18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72150" stop="71650"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSGPKKDKKKKDQANSAKSKGEMDDLCAMLSECNLVRNPREWWIDSGASCHVCANKELFSSYTLAPTDEKLFMENSAVAKVEGTGKILLKMTSGKVVTLNRVSYVPELRKNLVSIPVLIKNGFKCVFVFDKVVVSKNDMYVGKGYLSDGLFKLNVIAVDMNKDFASS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="88438" PGL_stop="90085"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88438" e_stop="88472"/>
            <exon e_start="88873" e_stop="89162"/>
            <exon e_start="89246" e_stop="89335"/>
            <exon e_start="89430" e_stop="89530"/>
            <exon e_start="89621" e_stop="89734"/>
            <exon e_start="89826" e_stop="89907"/>
            <exon e_start="90063" e_stop="90085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.497" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.674" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88438" e_stop="88472" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88473" i_stop="88872" i_length="400"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88873" e_stop="89162" e_length="290"/>
          </exon>
          <intron i_serial="2" don_prob="0.497" acc_prob="0.997">
            <gDNA_intron_boundary i_start="89163" i_stop="89245" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89246" e_stop="89335" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.996">
            <gDNA_intron_boundary i_start="89336" i_stop="89429" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89430" e_stop="89530" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.674">
            <gDNA_intron_boundary i_start="89531" i_stop="89620" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89621" e_stop="89734" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89735" i_stop="89825" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89826" e_stop="89907" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="89908" i_stop="90062" i_length="155"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90063" e_stop="90085" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88438" stop="88472"/>
              <exon start="88873" stop="89162"/>
              <exon start="89246" stop="89335"/>
              <exon start="89430" stop="89530"/>
              <exon start="89621" stop="89734"/>
              <exon start="89826" stop="89907"/>
              <exon start="90063" stop="90085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346009" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCTTTTCCATATTTGATCTCAGTTTTCTCTGA : GATGGTATAGAAATAGTTCACAAAGATGGTGATAGGCGTACCAGGAACACCATTGTCGAAGACTGGAAGGACACCTTCTCGTTTTCCAGGTAGTAGAAGGACGATTCCGTCGTCTACTCCAGGAGGTCCAAAGCTTCGCGAAGAGAAAATTCTTGTGACGATACGTGTGAGGCCTCTTAGCCCAAAAGAACAAGCAGCCTATGATCTCATTGCCTGGGATTTCCCTGATCAACAAACTATTGTTTCGAAGAACTTAATTCATGAAAGACACACTGGTCCTTATTCATTTG : ATAATGTCTTTGACCCAACGTGTTCGACTAGCAAGGTTTATGAACAAGGGGCTAGAGATGTTGCTCTCTCTGCTCTAAATGGGATAAATG : CAACCATATTTGCATATGGACAGACAAGTAGTGGGAAGACATTCACAATGAGGGGAATAACCGAGAGTGCTGTTAATGACATTTATGAGCACATCAAATTT : ACTACTGAGAGGGACTTTGTGCTGAAATTTTCTGCTTTAGAAATATATAATGAGACAGTAGTAGACCTCTTGAATCGCGAGTCTGGCTCACTTCGCCTATTGGATGATCCAGAG : AAAGGTATTATTGTAGAGAAACTAGTGGAAGAGATTGTAAAGGATGGCCAACATCTGAGAACCTTAATTGGTGCCTGTGAAG : CCCAGAGACAAGTGGGTGAAACT</gDNA_template>
            <first_frame> S  S  F  P  Y  L  I  S  V  F  S  E :   M  V  *  K  *  F  T  K  M  V  I  G  V  P  G  T  P  L  S  K  T  G  R  T  P  S  R  F  P  G  S  R  R  T  I  P  S  S  T  P  G  G  P  K  L  R  E  E  K  I  L  V  T  I  R  V  R  P  L  S  P  K  E  Q  A  A  Y  D  L  I  A  W  D  F  P  D  Q  Q  T  I  V  S  K  N  L  I  H  E  R  H  T  G  P  Y  S  F   : D  N  V  F  D  P  T  C  S  T  S  K  V  Y  E  Q  G  A  R  D  V  A  L  S  A  L  N  G  I  N   : A  T  I  F  A  Y  G  Q  T  S  S  G  K  T  F  T  M  R  G  I  T  E  S  A  V  N  D  I  Y  E  H  I  K  F  :  T  T  E  R  D  F  V  L  K  F  S  A  L  E  I  Y  N  E  T  V  V  D  L  L  N  R  E  S  G  S  L  R  L  L  D  D  P  E  :  K  G  I  I  V  E  K  L  V  E  E  I  V  K  D  G  Q  H  L  R  T  L  I  G  A  C  E   : A  Q  R  Q  V  G  E  T </first_frame>
            <second_frame>  H  L  F  H  I  *  S  Q  F  S  L   : R  W  Y  R  N  S  S  Q  R  W  *  *  A  Y  Q  E  H  H  C  R  R  L  E  G  H  L  L  V  F  Q  V  V  E  G  R  F  R  R  L  L  Q  E  V  Q  S  F  A  K  R  K  F  L  *  R  Y  V  *  G  L  L  A  Q  K  N  K  Q  P  M  I  S  L  P  G  I  S  L  I  N  K  L  L  F  R  R  T  *  F  M  K  D  T  L  V  L  I  H  L  :  I  M  S  L  T  Q  R  V  R  L  A  R  F  M  N  K  G  L  E  M  L  L  S  L  L  *  M  G  *  M  :  Q  P  Y  L  H  M  D  R  Q  V  V  G  R  H  S  Q  *  G  E  *  P  R  V  L  L  M  T  F  M  S  T  S  N  L :   L  L  R  G  T  L  C  *  N  F  L  L  *  K  Y  I  M  R  Q  *  *  T  S  *  I  A  S  L  A  H  F  A  Y  W  M  I  Q  R :   K  V  L  L  *  R  N  *  W  K  R  L  *  R  M  A  N  I  *  E  P  *  L  V  P  V  K  :  P  R  D  K  W  V  K   </second_frame>
            <third_frame>   I  F  S  I  F  D  L  S  F  L  *  :  D  G  I  E  I  V  H  K  D  G  D  R  R  T  R  N  T  I  V  E  D  W  K  D  T  F  S  F  S  R  *  *  K  D  D  S  V  V  Y  S  R  R  S  K  A  S  R  R  E  N  S  C  D  D  T  C  E  A  S  *  P  K  R  T  S  S  L  *  S  H  C  L  G  F  P  *  S  T  N  Y  C  F  E  E  L  N  S  *  K  T  H  W  S  L  F  I  * :   *  C  L  *  P  N  V  F  D  *  Q  G  L  *  T  R  G  *  R  C  C  S  L  C  S  K  W  D  K  C :   N  H  I  C  I  W  T  D  K  *  W  E  D  I  H  N  E  G  N  N  R  E  C  C  *  *  H  L  *  A  H  Q  I   : Y  Y  *  E  G  L  C  A  E  I  F  C  F  R  N  I  *  *  D  S  S  R  P  L  E  S  R  V  W  L  T  S  P  I  G  *  S  R   : E  R  Y  Y  C  R  E  T  S  G  R  D  C  K  G  W  P  T  S  E  N  L  N  W  C  L  *  S :   P  E  T  S  G  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0121E18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88889" stop="89162"/>
                    <exon start="89246" stop="89335"/>
                    <exon start="89430" stop="89530"/>
                    <exon start="89621" stop="89734"/>
                    <exon start="89826" stop="89907"/>
                    <exon start="90063" stop="90085"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTKMVIGVPGTPLSKTGRTPSRFPGSRRTIPSSTPGGPKLREEKILVTIRVRPLSPKEQAAYDLIAWDFPDQQTIVSKNLIHERHTGPYSFDNVFDPTCSTSKVYEQGARDVALSALNGINATIFAYGQTSSGKTFTMRGITESAVNDIYEHIKFTTERDFVLKFSALEIYNETVVDLLNRESGSLRLLDDPEKGIIVEKLVEEIVKDGQHLRTLIGACEAQRQVGET</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="108388" PGL_stop="113359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108388" e_stop="108612"/>
            <exon e_start="108745" e_stop="108801"/>
            <exon e_start="108888" e_stop="108938"/>
            <exon e_start="109028" e_stop="109090"/>
            <exon e_start="110301" e_stop="110351"/>
            <exon e_start="110428" e_stop="110494"/>
            <exon e_start="112026" e_stop="112108"/>
            <exon e_start="112933" e_stop="113359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="0.996"/>
          <exon-intron don_prob="0.945" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.749" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="108388" e_stop="108612" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="108613" i_stop="108744" i_length="132"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108745" e_stop="108801" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108802" i_stop="108887" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108888" e_stop="108938" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108939" i_stop="109027" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109028" e_stop="109090" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.899">
            <gDNA_intron_boundary i_start="109091" i_stop="110300" i_length="1210"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="110301" e_stop="110351" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.964">
            <gDNA_intron_boundary i_start="110352" i_stop="110427" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="110428" e_stop="110494" e_length="67"/>
          </exon>
          <intron i_serial="6" don_prob="0.749" acc_prob="0.954">
            <gDNA_intron_boundary i_start="110495" i_stop="112025" i_length="1531"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="112026" e_stop="112108" e_length="83"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="112109" i_stop="112932" i_length="824"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="112933" e_stop="113359" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108388" stop="108612"/>
              <exon start="108745" stop="108801"/>
              <exon start="108888" stop="108938"/>
              <exon start="109028" stop="109090"/>
              <exon start="110301" stop="110351"/>
              <exon start="110428" stop="110494"/>
              <exon start="112026" stop="112108"/>
              <exon start="112933" stop="113359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAACCTCCGTTCAGCTGTACTGCAAGTGCAACCCCTTTTGGCTCCTCTCTTCACCTTCCAATTTGTTCGAAAGCAGTCAGATACAGTTTACAAAATGGTTCAAGAGGCGACTAATGGTGGTTCCGAGAAGTCACAGTTGGCTATCACTGTAGAACAGCTCATTGCCGTTAACCCTTACAATCCAGATATCCTCCCTGATCTTGAAAACTATGTCAACGAACAG : GTTTTGTCTCAAACATACAATCTGGATGCAAACCTTTGCCTGCTCCGTCTTTATCAG : TTTGAGCCGGACAGAATGAGTACACCAATTGTTGCTCGTATTTTGGTTAAG : GCCTTAATGGCAATGCCAGCTCCAGATTACAGCCTGTGTCTCTTCCTAATCCCCGAACGAGTG : CAAATTGAAGAGCAATTCAAGACACTAAATGTTCTGTCACACTTCTTAGAG : ACTGCAAGGTTCCGCCAATTTTGGGATGAAGCTGCAAAGAGCCGCCACATTGTGGAAGCTGTTTCTG : GTTTTGAACAAGCAATTCGAGCATATGCTGTTCATGTCCTTTCAATAACCTACCAGAAGGTTCCAAGGACCATTCTTGCGGAG : GCTATCAACATTGAGGGTGTTTCATTGGATAAGTTCCTTGAGCACCAAGTATCGAACAACGGTTGGGTTGTTGAAAAAGGCCAGGGTAAGGGCCAACTCATCACCCTTCCTCCCACTGAATTCAACCATCCAGAGCTTAAGAAAAATACTGCTGATAGTGTTCCACTGGAGCACATCACGCGTATCTTCCCCATTCTTGGCTGAAGCCTGTAATTGTTGCATCAGTATAGAATCTGGAGTTTGAGAGAGTCATTTTTCATCATGAAACACATGGAACTGCAGGTCCTTGCATTTTGTGAACTCTTTAACAGACTTAGGAGAGGTGTTCTTTTTTAAAAAAAAATTACTGCGAGTCAATTTACTTTTGGAGGATGTTAAAATTTACTCTTTTCTCGGAAAATCTATAATGTAGTTGATTTTGCTAATT</gDNA_template>
            <first_frame> *  N  L  R  S  A  V  L  Q  V  Q  P  L  L  A  P  L  F  T  F  Q  F  V  R  K  Q  S  D  T  V  Y  K  M  V  Q  E  A  T  N  G  G  S  E  K  S  Q  L  A  I  T  V  E  Q  L  I  A  V  N  P  Y  N  P  D  I  L  P  D  L  E  N  Y  V  N  E  Q  :  V  L  S  Q  T  Y  N  L  D  A  N  L  C  L  L  R  L  Y  Q  :  F  E  P  D  R  M  S  T  P  I  V  A  R  I  L  V  K  :  A  L  M  A  M  P  A  P  D  Y  S  L  C  L  F  L  I  P  E  R  V  :  Q  I  E  E  Q  F  K  T  L  N  V  L  S  H  F  L  E  :  T  A  R  F  R  Q  F  W  D  E  A  A  K  S  R  H  I  V  E  A  V  S   : G  F  E  Q  A  I  R  A  Y  A  V  H  V  L  S  I  T  Y  Q  K  V  P  R  T  I  L  A  E  :  A  I  N  I  E  G  V  S  L  D  K  F  L  E  H  Q  V  S  N  N  G  W  V  V  E  K  G  Q  G  K  G  Q  L  I  T  L  P  P  T  E  F  N  H  P  E  L  K  K  N  T  A  D  S  V  P  L  E  H  I  T  R  I  F  P  I  L  G  *  S  L  *  L  L  H  Q  Y  R  I  W  S  L  R  E  S  F  F  I  M  K  H  M  E  L  Q  V  L  A  F  C  E  L  F  N  R  L  R  R  G  V  L  F  *  K  K  I  T  A  S  Q  F  T  F  G  G  C  *  N  L  L  F  S  R  K  I  Y  N  V  V  D  F  A  N  </first_frame>
            <second_frame>  K  T  S  V  Q  L  Y  C  K  C  N  P  F  W  L  L  S  S  P  S  N  L  F  E  S  S  Q  I  Q  F  T  K  W  F  K  R  R  L  M  V  V  P  R  S  H  S  W  L  S  L  *  N  S  S  L  P  L  T  L  T  I  Q  I  S  S  L  I  L  K  T  M  S  T  N  R :   F  C  L  K  H  T  I  W  M  Q  T  F  A  C  S  V  F  I  S :   L  S  R  T  E  *  V  H  Q  L  L  L  V  F  W  L  R :   P  *  W  Q  C  Q  L  Q  I  T  A  C  V  S  S  *  S  P  N  E  C :   K  L  K  S  N  S  R  H  *  M  F  C  H  T  S  *  R :   L  Q  G  S  A  N  F  G  M  K  L  Q  R  A  A  T  L  W  K  L  F  L  :  V  L  N  K  Q  F  E  H  M  L  F  M  S  F  Q  *  P  T  R  R  F  Q  G  P  F  L  R  R :   L  S  T  L  R  V  F  H  W  I  S  S  L  S  T  K  Y  R  T  T  V  G  L  L  K  K  A  R  V  R  A  N  S  S  P  F  L  P  L  N  S  T  I  Q  S  L  R  K  I  L  L  I  V  F  H  W  S  T  S  R  V  S  S  P  F  L  A  E  A  C  N  C  C  I  S  I  E  S  G  V  *  E  S  H  F  S  S  *  N  T  W  N  C  R  S  L  H  F  V  N  S  L  T  D  L  G  E  V  F  F  F  K  K  K  L  L  R  V  N  L  L  L  E  D  V  K  I  Y  S  F  L  G  K  S  I  M  *  L  I  L  L  I </second_frame>
            <third_frame>   K  P  P  F  S  C  T  A  S  A  T  P  F  G  S  S  L  H  L  P  I  C  S  K  A  V  R  Y  S  L  Q  N  G  S  R  G  D  *  W  W  F  R  E  V  T  V  G  Y  H  C  R  T  A  H  C  R  *  P  L  Q  S  R  Y  P  P  *  S  *  K  L  C  Q  R  T   : G  F  V  S  N  I  Q  S  G  C  K  P  L  P  A  P  S  L  S   : V  *  A  G  Q  N  E  Y  T  N  C  C  S  Y  F  G  *   : G  L  N  G  N  A  S  S  R  L  Q  P  V  S  L  P  N  P  R  T  S   : A  N  *  R  A  I  Q  D  T  K  C  S  V  T  L  L  R   : D  C  K  V  P  P  I  L  G  *  S  C  K  E  P  P  H  C  G  S  C  F  W :   F  *  T  S  N  S  S  I  C  C  S  C  P  F  N  N  L  P  E  G  S  K  D  H  S  C  G   : G  Y  Q  H  *  G  C  F  I  G  *  V  P  *  A  P  S  I  E  Q  R  L  G  C  *  K  R  P  G  *  G  P  T  H  H  P  S  S  H  *  I  Q  P  S  R  A  *  E  K  Y  C  *  *  C  S  T  G  A  H  H  A  Y  L  P  H  S  W  L  K  P  V  I  V  A  S  V  *  N  L  E  F  E  R  V  I  F  H  H  E  T  H  G  T  A  G  P  C  I  L  *  T  L  *  Q  T  *  E  R  C  S  F  L  K  K  N  Y  C  E  S  I  Y  F  W  R  M  L  K  F  T  L  F  S  E  N  L  *  C  S  *  F  C  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0121E18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108391" stop="108612"/>
                    <exon start="108745" stop="108801"/>
                    <exon start="108888" stop="108938"/>
                    <exon start="109028" stop="109090"/>
                    <exon start="110301" stop="110351"/>
                    <exon start="110428" stop="110494"/>
                    <exon start="112026" stop="112108"/>
                    <exon start="112933" stop="113136"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLRSAVLQVQPLLAPLFTFQFVRKQSDTVYKMVQEATNGGSEKSQLAITVEQLIAVNPYNPDILPDLENYVNEQVLSQTYNLDANLCLLRLYQFEPDRMSTPIVARILVKALMAMPAPDYSLCLFLIPERVQIEEQFKTLNVLSHFLETARFRQFWDEAAKSRHIVEAVSGFEQAIRAYAVHVLSITYQKVPRTILAEAINIEGVSLDKFLEHQVSNNGWVVEKGQGKGQLITLPPTEFNHPELKKNTADSVPLEHITRIFPILG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 46 chains have been computed
$ 
$ memory statistics:
$ 18144 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2268 bytes was the average size of a spliced alignment
$ 11520 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2304 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 60 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-22 20:45:54
-->
