<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-07 02:35:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="16710" stop="15578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16410" g_stop="15878" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16410" e_stop="15878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGACGGATCGTCGTGGTCACGACGGA-CGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTCTGCTGCT-TTCTTCATTACCCTCGACGGCAAGTATGACGGACCGTCATAGGCACAACAGTCTGTCGAGGGTCTTCATTCCAAAACACTTCAACTCTTGGAATATGGATACT-GGATTACTTCTCTGAACTTCATGACGAACCTGCAGGACGGACCGTCATAGACACGACGGACCGTCACAAGATTCGTAACCCCACACTTAGTCAGATTTCTCTATCTTCCTTCAGCAGCTGTACTATGCTGCCACCTACGGACTGTCACAAGCACAACGGACCGTCACAAGTTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTTCGTATTCATCTTTGGACAGATTTTCTTGCAAAATAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGATTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAGTTATCACTCA</genome_strand>
        <mrna_strand>TCGCGA-GGTCCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTCTTCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTCCAAAACACTTTAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGA-TTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACGGTATATCACTTGGCCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E351864" ref_strand="+" ref_description="SGN-E351864 [cTOS-8-K24]">
      <seq>acttcgaaggtgtttctccctgtatcagacttcctagtactccaaactttgttattccgggagattttcactaatttttaagcgatctcagcataagggcattctccataagatccaccttctataatgtccaacacttctttgttactatcatcctgtccctgatagaactatttcttccgtgactcatcatctatacagtgatttggaacacttctcaagaatgaggtgatctatcccaagaactactaactgactctactggtagtgccacaaaattatttactctgtctttgtggtttagtttcttcgagattggatagtagagtgccaagaaaacatctcttaattggttccaagtgaagattgagttgcatggaagctcagtgaaccatataggagcctctcccttcagtgagagaggaaacactgtgagccctattacatctagatccatgtcaggcctccccacactacatttacacactgcccttaccttagctatttgggcatgtggatcctcaggcggtagccctgaaaacaaacctctagcagtgagcatttgcatcaggctactagttaccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="18791" stop="17602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18491" g_stop="17902" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E351864" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18491" e_stop="17902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAGCTTTATTATTCCGGGAGATCTTCTCTAATTTTTCGGCAATCTCAGCATAAGGACATTCCCCATGATATCCACCTGCTATAGTGTCCAACACCACTTTATTATTATCATCCTGTCCCCGATAGAAGTATTCCTTCAATGACTCATCATCGATACGGTAATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCCAAGAATTACTAACTGACTCTTCTGGTAGTTCCACAAAGTTATTCACCCTGTCTTTGTGGTTTAGTTTCTTAGAGACTGGATAATAGCGTGCTAAGAAAACATCCCTTAGTTGGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCATATAGCAGCCTCTCCCATCAGTGAGAGAGGAAACACTCTTAGCCCAATTACATCTAAATCCAAATCAGGCCTCCCTACACAACTTTTACACACTGCCCTCACCTTAGCTATATGGGCATGTGGATCCTCAGAAGGTAGCCCTGAAAAGAAACCTCTAGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</genome_strand>
        <mrna_strand>ACTTCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAACTTTGTTATTCCGGGAGATTTTCACTAATTTTTAAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACCTTCTATAATGTCCAACACTTCTTTGTTACTATCATCCTGTCCCTGATAGAACTATTTCTTCCGTGACTCATCATCTATACAGTGATTTGGAACACTTCTCAAGAATGAGGTG-ATCTATCCCAAGAACTACTAACTGACTCTACTGGTAGTGCCACAAAATTATTTACTCTGTCTTTGTGGTTTAGTTTCTTCGAGATTGGATAGTAGAGTGCCAAGAAAACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGCATGGAAGCTCAGTGAACCATATAGGAGCCTCTCCCTTCAGTGAGAGAGGAAACACTGTGAGCCCTATTACATCTAGATCCATGTCAGGCCTCCCCACACTACATTTACACACTGCCCTTACCTTAGCTATTTGGGCATGTGGATCCTCAGGCGGTAGCCCTGAAAACAAACCTCTAGCAGTGAGCATTTGCATCAGGCTACTAGTTACCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E717884" ref_strand="+" ref_description="SGN-E717884 [FC03AB03]">
      <seq>aaaagttggttgcagtaccgtaacattctattcacgataatgacctggtaatatgttttcttgttggactaggacttttctatcgtcctttttccaaatttcttgaatcatgtcacgaaaaaattatatttgatgcattgtataaaacgttttgaataaagaatgacaactgaaaaggaatgaagtcctttactgttattgcacctacagcactatatactcagagttccttttctaccatatgtggatgtggcaaaagccaaggtcgtgaacatttctcaaatgaaggattcaacagtcttaaatcgtgaatttcataactcggttcatatcaattctacttaatctcaaaattcagataatgttcgaatttatttaattgaaagaaagagccatattacatgtgtttgtccacctcctaggagtaataacggcaacaaagtttctggaccacctgttttcaatttaccaaaaactttattgtcacaaaattgattaataaatagtaacaccatacatcattttacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="+" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="32711" stop="33839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33011" g_stop="33539" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="+" ref_id="SGN-E717884" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33011" e_stop="33539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTGGTTGCAGTACCGTAACATTCTATTCACGATAATGACCTGGTAATATGTTTTCTTGTTGGACTAGGACTTTTCTATCGTCCTTTTTCCAGATTTCTTGAATCATGTCAAGAGAAAATTATATTTGATGCATTGTATAAAATGTTTTGAATAAAGAATGACAATTGAAAAGGAATGAAGTCCTTTACTGTTATTGCACCTACAGCACTATATACTCAGAGTTCCTTTTCTACCATATGTGGATGTGGCAAAAGCCAAGGTCGTGGACATTTCTCAAATGAAGGATTCAACAGTCTTAAATCGTGAATTTCATAACTCGGTTCATATCAATTCTACTTAATCTCAAAATTCAGATAATGTTCGAATTTATTTAATTGAAAGAAAGAGTCATATTACATGTGTTTGTCCACCTCCTAGGAGTAATAATGGCAACAAAGTTTCTGGACCACCTGTTTTCAATTTAGCAAAAACTTTATTGTCACAAAATTGATTAATAAATAGTAACACCATACATCATTTTACAA</genome_strand>
        <mrna_strand>AAAAGTTGGTTGCAGTACCGTAACATTCTATTCACGATAATGACCTGGTAATATGTTTTCTTGTTGGACTAGGACTTTTCTATCGTCCTTTTTCCAAATTTCTTGAATCATGTCACGAAAAAATTATATTTGATGCATTGTATAAAACGTTTTGAATAAAGAATGACAACTGAAAAGGAATGAAGTCCTTTACTGTTATTGCACCTACAGCACTATATACTCAGAGTTCCTTTTCTACCATATGTGGATGTGGCAAAAGCCAAGGTCGTGAACATTTCTCAAATGAAGGATTCAACAGTCTTAAATCGTGAATTTCATAACTCGGTTCATATCAATTCTACTTAATCTCAAAATTCAGATAATGTTCGAATTTATTTAATTGAAAGAAAGAGCCATATTACATGTGTTTGTCCACCTCCTAGGAGTAATAACGGCAACAAAGTTTCTGGACCACCTGTTTTCAATTTACCAAAAACTTTATTGTCACAAAATTGATTAATAAATAGTAACACCATACATCATTTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="57946" stop="56613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57646" g_stop="56913" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57646" e_stop="56913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCGTTCAAAAACACTTCAACTCTTGGAATATGGGTACCACGATTACTTCTCTGAACTTCATGA-GAACCTGCAGGACGGACCGTCATAGACACGACTGACCGTCACAAGCTTCGTAACCCCACACTTAGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTATGGACCGTCAGAAGCATGGCGGACTGTCACAAGCACGACGGACCGTCACAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCACTTAAAATCTCCGCATTCATCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATATAAACATTAGCACAAAAAGTCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACTACGGTATATCAACACCCTCAACTCAAATTTGTTGTTTGTCCTCAAGCGACACACTATGACTCAATACAAAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCAATTAATCTCATTAAATCTATGCATACTATCATTATTAGGCTTGAATTATGTGGGATCAGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTTAATTTCTCACCGAGGTGCTAACAATTTCGGTATTGCAACTAATGTCCTCACTTTAAAATAAAATCCTCATTTTTCACACAATGATTTCAATTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACC--T--A----C-G--G-A---C---C-GTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E354335" ref_strand="+" ref_description="SGN-E354335 [cTOS-17-A23]">
      <seq>aagacgagagttcaaaaatcgaatcgattgaagacagtcctgtgacacccccgctgactaaagaacgactaccacgtactttgttccgtccaatgtattcatcttcagattctcttgaactacagtccacccattctcgctataactatgactcttgtggtgtctcgtcaactccaaaactctcaagcatcagtggaacaaagacagagatatcatcaatggatgcctctatgaggactagcacatcaagagatgcagatcgctctggagagctatctatcagcaatgccagtgatcttgaaacagaatgggtcgagcaagatgagccgggggtttacatcactatacgagcactaccagatggcagacgagaactcaaacgtgtcagattcagccgagaaaaatttggagaagtgcatgccaggttatggtgggaggagaatcgtgctaggatacacaaacaatacctgggatgatcgataacacttgttgcaatatcactacatttcctgttgattgccaattaaggaggtgttgcacttctttggcaatgctcatagtattcattattatatgtggagccagagattagtatacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="69088" stop="67511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68894" g_stop="68887" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68886" i_stop="68787" i_length="100">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68786" g_stop="68401" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="394" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68400" i_stop="68023" i_length="378">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68022" g_stop="67810" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="607" r_length="213" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E354335" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68894" e_stop="68887"/>
          <exon e_start="68786" e_stop="68401"/>
          <exon e_start="68022" e_stop="67810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACGAGGTAACCCCTTATATCATCTCCTACCTACTTTATGGTGTTTACATACATGTTTGTCTTTTTTCCTTCATCATGAGTATACATATTCTTGATTCTTTTATAGAGTTCAAAAATCGAATCGATTGAAGACAGTCCTGTGACACCCCCGCTGACTAAAGAACGACTACCACGTACTTTGTTCCGTCCAATGTATTCATCTTCAGATTCTCTTGAACTACAGTCCACCCATTCTCGCTATAACTATGACTCTTGTGGTGTCTCGTCAACTCCAAAACTCTCAAGCATCAGTGGAACAAAGACAGAGATATCATCAATGGATGCCTCTATGAGGACTAGCACATCAAGAGATGCAGATCGCTCTGGAGAGCTATCTATCAGCAATGCCAGTGATCTTGAAACAGAATGGGTCGAGCAAGATGAGCCGGGGGTTTACATCACTATACGAGCACTACCAGATGGCAGACGAGAACTCAAACGTGTCAGATTCAGGTTCGTTTCATCTCATGATCAGTTAGCACAATTATTTCAAGCTATCTCTTCTTGAGTGACCTAAGGAAAATGATGTGTGGAATATGTATATAGACCTACCTAGTTATGCAGGTGGACCTACAAGAACACTATTGCTATTATTACAGTTGCACTCTGTCCATTAGTGCTAGAGCATATTCTCATTTATCATTATGGTTTTCATCATAACGTGCTTGATGAAGTGCTACAATGTTAGTAAGAAGAACGCGTAACGAGAGAACTACTCTAGTTAACTATATATAAGACATGATCTTTGAGCTACTGTTGCTACTTCTGCCTCTCTTAATTTGAATGATTTTTCTAACTGAGGCTGATATAACCTTATGCATGTCAACGCAGCCGAGAAAAATTTGGAGAAGTGCATGCCAGGTTATGGTGGGAGGAGAATCGTGCTAGGATACACAAACAATACCTGGGATGATCGATAACACTTGTTGCAATATCACTACATTTCCTGTTGATTGCCAATTAAGGAGGTGTTGCACTTCTTTGGCAATGCTCATAGTATTCATTATTATATGTGGAGCCAGAGATTAGTATACAAAGAAGAAT</genome_strand>
        <mrna_strand>AAGACGAG....................................................................................................AGTTCAAAAATCGAATCGATTGAAGACAGTCCTGTGACACCCCCGCTGACTAAAGAACGACTACCACGTACTTTGTTCCGTCCAATGTATTCATCTTCAGATTCTCTTGAACTACAGTCCACCCATTCTCGCTATAACTATGACTCTTGTGGTGTCTCGTCAACTCCAAAACTCTCAAGCATCAGTGGAACAAAGACAGAGATATCATCAATGGATGCCTCTATGAGGACTAGCACATCAAGAGATGCAGATCGCTCTGGAGAGCTATCTATCAGCAATGCCAGTGATCTTGAAACAGAATGGGTCGAGCAAGATGAGCCGGGGGTTTACATCACTATACGAGCACTACCAGATGGCAGACGAGAACTCAAACGTGTCAGATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................CCGAGAAAAATTTGGAGAAGTGCATGCCAGGTTATGGTGGGAGGAGAATCGTGCTAGGATACACAAACAATACCTGGGATGATCGATAACACTTGTTGCAATATCACTACATTTCCTGTTGATTGCCAATTAAGGAGGTGTTGCACTTCTTTGGCAATGCTCATAGTATTCATTATTATATGTGGAGCCAGAGATTAGTATACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E316133" ref_strand="+" ref_description="SGN-E316133 [cTOA-23-J10]">
      <seq>acttacttctcagatcaaggacatggcattgaaagcatcaggagcatacaaacagtgtggtccatgttccactcacccctccactctccgaaaaaacggaagccaaaacgactccgactccgataaattccgttggtcttataaaagaacagggagttcgagttccagctccacggctgggaggaaggagctggaagccaggcttaaaggaatatcaagcggggaagttacgcccgtatcggcgtcagctagtggccggcgagctgaacccgtggtgtttgttgaagaaagcgagccgaaagagtgggtggctcaagtcgagccgggagttctaatcactttcgtttcattaccacgtggcggcaatgatcttaaacggatccgattcagtcgagaaatgtttaataaataccaagctcaaagatggtggtccgagaattgtgagaaggtaatggagctttataatgtccaaaggttgaatcgtcaagcttttccccttccaacgcctccaagatcagaagacgagagttcaaaaatcgaatcgattgaagacagtcctgtgacacccccgctngactaagacgactaccacgtactttgttccgtccaatgtattcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="72308" stop="68390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72075" g_stop="72063" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72062" i_stop="71996" i_length="67">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71995" g_stop="71619" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="390" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71618" i_stop="69023" i_length="2596">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.296" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69022" g_stop="68887" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="526" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68886" i_stop="68787" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68786" g_stop="68690" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="622" r_length="96" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E316133" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72075" e_stop="72063"/>
          <exon e_start="71995" e_stop="71619"/>
          <exon e_start="69022" e_stop="68887"/>
          <exon e_start="68786" e_stop="68690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTACTTCTCAGGTACATTATTCATATTCATATTCACTCTTTTTCTATGAAAAAAATCCAATTTTAACTTTATTCGTAGATCAAGGACATGGCATTGAAAGCATCAGGAGCATACAAACAGTGTGGTCCATGTTCCACTCACCCCTCCACTCTCCGAAAAAACGGAAGCCAAAACGACTCCGACTCCGATAAATTCCGTTGGTCTTATAAAAGAACAGGGAGTTCGAGTTCCAGCTCCACGGCTGGGAGGAAGGAGCTGGAAGCCAGGCTTAAAGGAATATCAAGCGGGGAAGTTACGCCCGTATCGGCGTCAGCTAGTGGCCGGCGAGCTGAACCCGTGGTGTTTGTTGAAGAAAGCGAGCCGAAAGAGTGGGTGGCTCAAGTCGAGCCGGGAGTTCTAATCACTTTCGTTTCATTACCACGTGGCGGCAATGATCTTAAACGGATCCGATTCAGGTATTCTTTTTCCCATTATAAAATTGGTAGTATTAATTATTGGTTTATTGTTCATTTTTGTTTTGAGTGGCGAACCATTACTTGTGAACTAATTTTCTCTTTCATGGACCAAACAACTTTATATTATAGCCGTCTATATATCTTATAGGTTACAATATAGAATGTTAGTGGAATTTATTCACACTAAGGAAGTTTTTTTTATTCTTTTTTTTCCCCTTATTGGTTGGTAAACAACAAATTTTGGAATTTCCTAAAGTGTTCTTGGTTGTAAATAGTTGTTAAAAATGTGGTGTTTAGCTACTTTATAAGTAAAATATTAGGATACATTTCTTGACTATAAAAAGGAGAATACTAGGTGAAGTTGCCAAAAAAAAAAGAGAAGAAATTTCTTTACTTCTCCACTGCAACAAGTTAAACTCCTATAGATTATTTGCTTGATGGGATTAAAAAATTAAAATTTCAGACTAAAACTTAAGATTAGTTTATCCTGTATTAAGTTATGGACTCCATTATAACTATGTCCTATAGAAAGTGATATAACATATCTCATAGAGTATTTTTGTTTATCTCATCCCAACAACCAAAATCACGACCCCTAAGGTAATGTGCTAATTGATTGTATACTCTTATATGATGTTTCATTAATTCAATTTATGTGACGTAGTTTAATTGGACCTAAAAATTTAAAAAGTATGAAAAAACTTTGCAGTTTAATTCTGAAATTATGGAAAATATATTGAGTATGAGTATGACTATGATTATATATCCAATTGTGGGTTGTGATTAAAGGTTCCTTTCAAACCCAAACTGTATGGTTATTGTCAAAATTGGCAACAGTTTATGGTCAAGAGCAATTAATTAGTGTGTGAGGCAGTCGTTCCAAAAAGTTAAACCTGTGATTATTACCGAAAGAAAGCATGCTAAAAGTAAATTTTGACTCCCTACCCAAATATCACCTTTATTAATCTCTGTTCATACGAAGAAATTACTAGTAATTATGAAAGAAAAATAAGATTCCTTTCAAATTAAAGTGAAAAAAAGAAGAGCAGAAAATGATTAAGAGTTTGTTTTGGTGGGTCTGTTTTGATTGTGTTGGCAAAAACCTTTTACTAATGTTGTCGTCTTGTCGGGTGTTGCTTACAACCCTTTCATTTTCAATCTTGATCATCATTAATTCTTCCATTTTGTCATCTTTTGTCTCTCAACAATTATTTACACTTACAAAATTGGAGTAGACTCTAAATTTGGCTTCTAATGGAGGGAACAACACTCTTGTGCTATCACATTCTTGTTTTCAATCGACGTTACAATATCAATAGTAACAGACATATAGACATGGAAAATTACTATTACTAGAAGAGTCTATGTTATCGTTGTAATTACTTGTACAAAGTGGGAGCCAAGACTTTTGCTATTCAATATTGTAGACCTCACCTTAGTGCAACATCACAAGATTTGTCATGGGTCTAACCTTCTCTTCTTTTTATTTTTTTTTATAATTGTGACAGAATCAAAATTTTCATTAAGAAAATTCAAAATATGAAAAAGTAAACACTTGAATTAGCCTAAACACGTTCAATATCTGGTATATGCACATAACAAATAATTTTCTGACAAAGGTTCATTTTCCCAAATTGTCTCTTCCTTTGGATGTCTGGATCAACTTATGTGTACCTCATTTAATTTCACGGAAATTATGTCACCTCACAACAACTTTATGTACCAAATAACTCTGTGTATCAAAATTAGGACAGATAGAAACAAATCATCTAGTGTTTTTTCATTCTATTTAGATTTGAACCTAAAACTAGAGTCTAACCTTCCTAATAATCAAATGAAATAAAATGAAATCATATAAAAAAAAGAGTTGATCAATGATTGTTGAACAGTATTTATTAATAATCTGTTGAATGGCCTGTAAGTCACTATCCATTCCCGTGAAATAAAATTAATCATTTTTTTGGTTGGTGAAGGGTAGGATGTGCTCTAAGCAAAGTCAAAGGCCGTGGCATTTTTTTTTAAATAACCATGCATAAAGCCAGTTTTTGAGTTATTGGTCCCCTTGAATTATGAAAAAGCTTATGTGAGTGGTAGGCCATCAAAACAAGACACTTACACCATAATATAATCTAATAATTAAATCACTTGCTATAATCTCTTTAGGTTTTGACCATCAGAATGTCTAATTTTGGTTTTCTTATTGTTACCATCTTTTCTATAAACCATCTCATTAAAAGGTAAAATAAAATCAAATTGTTACATTCTTTTTTAATTCGACTAAAAAGAAAATAATGTCACGGATGGAGTAATTAATAATCTAAACATCCAGCTTAGCAGGTTCATTGCATAAACCACAATGGCCATGCTGCAAAAGAGAAACACATGAACTGTTTTCATTTCTAATAAAAGTCCTGTTATCTCATACATGTTCACCTCACAACAATGTGGTTTAACAAAACTTTAAGAAAATAAATTAAGGAGGAGCTAATGTATGTGGTATTAAAGGAAAAATAGTTGTATCTTCGAAATTAAGGATTTTCTGGATAGATCATAGATGAAGCCAAGTTTGTGACTCGTGGTTATTTTGTTATAATAGTCGAGAAATGTTTAATAAATACCAAGCTCAAAGATGGTGGTCCGAGAATTGTGAGAAGGTAATGGAGCTTTATAATGTCCAAAGGTTGAATCGTCAAGCTTTTCCCCTTCCAACGCCTCCAAGATCAGAAGACGAGGTAACCCCTTATATCATCTCCTACCTACTTTATGGTGTTTACATACATGTTTGTCTTTTTTCCTTCATCATGAGTATACATATTCTTGATTCTTTTATAGAGTTCAAAAATCGAATCGATTGAAGACAGTCCTGTGACACCCCCGCT-GACTAAAGAACGACTACCACGTACTTTGTTCCGTCCAATGTATTCATCTT</genome_strand>
        <mrna_strand>ACTTACTTCTCAG...................................................................ATCAAGGACATGGCATTGAAAGCATCAGGAGCATACAAACAGTGTGGTCCATGTTCCACTCACCCCTCCACTCTCCGAAAAAACGGAAGCCAAAACGACTCCGACTCCGATAAATTCCGTTGGTCTTATAAAAGAACAGGGAGTTCGAGTTCCAGCTCCACGGCTGGGAGGAAGGAGCTGGAAGCCAGGCTTAAAGGAATATCAAGCGGGGAAGTTACGCCCGTATCGGCGTCAGCTAGTGGCCGGCGAGCTGAACCCGTGGTGTTTGTTGAAGAAAGCGAGCCGAAAGAGTGGGTGGCTCAAGTCGAGCCGGGAGTTCTAATCACTTTCGTTTCATTACCACGTGGCGGCAATGATCTTAAACGGATCCGATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGAAATGTTTAATAAATACCAAGCTCAAAGATGGTGGTCCGAGAATTGTGAGAAGGTAATGGAGCTTTATAATGTCCAAAGGTTGAATCGTCAAGCTTTTCCCCTTCCAACGCCTCCAAGATCAGAAGACGAG....................................................................................................AGTTCAAAAATCGAATCGATTGAAGACAGTCCTGTGACACCCCCGCTNGACT-AAG-ACGACTACCACGTACTTTGTTCCGTCCAATGTATTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E329092" ref_strand="+" ref_description="SGN-E329092 [cTOC-24-P3]">
      <seq>aagcatcaggagcatacaaacagtgtggtccatgttccactcacccctccactctccgaaaaaacggaagccaaaacgactccgactccgataaattccgttggtcttataaaagaacagggagttcgagttccagctccacggctgggaggaaggagctggaagccaggcttaaaggaatatcaagcggggaagttacgcccgtatcggcgtcagctagtggccggcgagctgaacccgtggtgtttgttgaagaaagcgagccgaaagagtgggtggctcaagtcgagccgggagttctaatcactttcgtttcattaccacgtggcggcaatgatcttaaacggatccgattcaggtattctttttcccattataaaattggtagtattaattattggtttattgttcatttttgttttgagtggcgaaccattacttgtgaactaattttctctttcatggaccaaacaactttatattatagccgtctatatatcttataggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="72276" stop="71168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71976" g_stop="71468" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E329092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71976" e_stop="71468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATCAGGAGCATACAAACAGTGTGGTCCATGTTCCACTCACCCCTCCACTCTCCGAAAAAACGGAAGCCAAAACGACTCCGACTCCGATAAATTCCGTTGGTCTTATAAAAGAACAGGGAGTTCGAGTTCCAGCTCCACGGCTGGGAGGAAGGAGCTGGAAGCCAGGCTTAAAGGAATATCAAGCGGGGAAGTTACGCCCGTATCGGCGTCAGCTAGTGGCCGGCGAGCTGAACCCGTGGTGTTTGTTGAAGAAAGCGAGCCGAAAGAGTGGGTGGCTCAAGTCGAGCCGGGAGTTCTAATCACTTTCGTTTCATTACCACGTGGCGGCAATGATCTTAAACGGATCCGATTCAGGTATTCTTTTTCCCATTATAAAATTGGTAGTATTAATTATTGGTTTATTGTTCATTTTTGTTTTGAGTGGCGAACCATTACTTGTGAACTAATTTTCTCTTTCATGGACCAAACAACTTTATATTATAGCCGTCTATATATCTTATAGGTT</genome_strand>
        <mrna_strand>AAGCATCAGGAGCATACAAACAGTGTGGTCCATGTTCCACTCACCCCTCCACTCTCCGAAAAAACGGAAGCCAAAACGACTCCGACTCCGATAAATTCCGTTGGTCTTATAAAAGAACAGGGAGTTCGAGTTCCAGCTCCACGGCTGGGAGGAAGGAGCTGGAAGCCAGGCTTAAAGGAATATCAAGCGGGGAAGTTACGCCCGTATCGGCGTCAGCTAGTGGCCGGCGAGCTGAACCCGTGGTGTTTGTTGAAGAAAGCGAGCCGAAAGAGTGGGTGGCTCAAGTCGAGCCGGGAGTTCTAATCACTTTCGTTTCATTACCACGTGGCGGCAATGATCTTAAACGGATCCGATTCAGGTATTCTTTTTCCCATTATAAAATTGGTAGTATTAATTATTGGTTTATTGTTCATTTTTGTTTTGAGTGGCGAACCATTACTTGTGAACTAATTTTCTCTTTCATGGACCAAACAACTTTATATTATAGCCGTCTATATATCTTATAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E243159" ref_strand="+" ref_description="SGN-E243159 [cLEE-2-B6]">
      <seq>aacaagtcccaaatagaaagagcaacaacaaggaagaagaaattgtaagccttcgacgtgcaatattgattgagaaatggatggaaagttacaaatatagtcaaagttcaggacacttcagttcagattcatcttcatcagcagagtcaagcatgttttcatcttcagaaacagagtcaagatccatcaatacattgccaaaaacaacaacacaagtccgaagaccagacagggttgttacattctctacagagactaaaactccaaaatgtgaaggaggaggaaggttcatgaggacaaaatcaagagccttgaagatggtgaaacaacctatttcaccaggtgggaaaatagcaaactttctaaattcgatattcaattcgaaaaacatcaagaaaaaccatcaagaggactggagttcagtcaggaaatcaagatcagtgaatgattcaactactatgacaacatcatcttgcttaaacaaaaccccttcctcgacttcgataagtaataaatcgaaaagatcagtgagattttgccctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="83136" stop="81993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82836" g_stop="82293" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E243159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82836" e_stop="82293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTCCCAAATAGAAAGAGCAACAACAAGGAAGAAGAAATTGTAAGCCTTCGACGTGCAATATTGATTGAGAAATGGATGGAAAGTTACAAATATAGTCAAAGTTCAGGACACTTCAGTTCAGATTCATCTTCATCAGCAGAGTCAAGCATGTTTTCATCTTCAGAAACAGAGTCAAGATCCATCAATACATTGCCAAAAACAACAACACAAGTCCGAAGACCAGACAGGGTTGTTACATTCTCTACAGAGACTAAAACTCCAAAATGTGAAGGAGGAGGAAGGTTCATGAGGACAAAATCAAGAGCCTTGAAGATGGTGAAACAACCTATTTCACCAGGTGGGAAAATAGCAAACTTTCTAAATTCGATATTCAATTCGAAAAACATCAAGAAAAACCATCAAGAGGACTGGAGTTCAGTCAGGAAATCAAGATCAGTGAATGATTCAACTACTATGACAACATCATCTTGCTTAAACAAAACCCCTTCCTCGACTTCGATAAGTAATAAATCGAAAAGATCAGTGAGATTTTGCCCTGT</genome_strand>
        <mrna_strand>AACAAGTCCCAAATAGAAAGAGCAACAACAAGGAAGAAGAAATTGTAAGCCTTCGACGTGCAATATTGATTGAGAAATGGATGGAAAGTTACAAATATAGTCAAAGTTCAGGACACTTCAGTTCAGATTCATCTTCATCAGCAGAGTCAAGCATGTTTTCATCTTCAGAAACAGAGTCAAGATCCATCAATACATTGCCAAAAACAACAACACAAGTCCGAAGACCAGACAGGGTTGTTACATTCTCTACAGAGACTAAAACTCCAAAATGTGAAGGAGGAGGAAGGTTCATGAGGACAAAATCAAGAGCCTTGAAGATGGTGAAACAACCTATTTCACCAGGTGGGAAAATAGCAAACTTTCTAAATTCGATATTCAATTCGAAAAACATCAAGAAAAACCATCAAGAGGACTGGAGTTCAGTCAGGAAATCAAGATCAGTGAATGATTCAACTACTATGACAACATCATCTTGCTTAAACAAAACCCCTTCCTCGACTTCGATAAGTAATAAATCGAAAAGATCAGTGAGATTTTGCCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E577116" ref_strand="+" ref_description="SGN-E577116 [32915]">
      <seq>acagagctttaaaaatggagggcacaagattatgccaccggaacctccttcccactacaaacccctctctcacttgcagatttttctctaattctgttattcatcacacctccttccacaattataagacaaacttccccaagtttttggtttctgcaactatggaaacttccttcaagcctgaggaagctagggttcctgcagcgcttcccttgcctactcctcccgtcaccaagttcaagattgctctttgccagttatctgtaactaccgacaaggagagaaacattgctcatgctcagcaggcaatagaaaatgctgcagacaagggtgctcagcttattcttctccctgaaatatggaatagtccatattccaatgatagttttccattatctgcagaggacattgatgctggtggagatgcatctccttcaactaagatgttatctgaagtttctcggagtcgaaagattacaattattggtggctctatacctgaacgcagcggtgataacttatataacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="97014" stop="91462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96703" g_stop="96493" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="236" r_length="211" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96492" i_stop="95543" i_length="950">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95542" g_stop="95426" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="353" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95425" i_stop="91939" i_length="3487">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.939" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91938" g_stop="91762" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="530" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E577116" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96703" e_stop="96493"/>
          <exon e_start="95542" e_stop="95426"/>
          <exon e_start="91938" e_stop="91762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTATGCCACCGGAATCTCCTTCCCACTTCAAACCCCTCTCTCACTTCCACATTTATCTCTAGTTTTGTTATTGGTCGCACCTCCTCCCACAATTATAACAGAAACTTCCCCAAATTTTTGGTTTCTGCAACTATGGAATCTTCCTTCAAGCCTGAGGAAGCTAGGGTTCCTGTAGAGCTTCCTTTGCCTGCTCCTCCCGTCACCAAGGCAACTTCCTCACTTTTCCTTTTGCATTTCTATTTACTTGATTATAATTCGATCATTTTCTTTTGCATTTCTATATAAATATTCGAATTGGTTAGCATTATGTGAAGTTTGCTTGTATGTATATAGTCAAAAGGAGGAGAAAGTTTAAGGACTCATAAAGCTTTAGAAATGTCTTCTTTTTCCTGACCATATATCAAAAGATTAATGGTTTAATTATATATAAACATAGAGTATTTATTATTCTCTGTGTCTTTTCTCACTTTCCTTTCATTTGCTTGTGAATAAGTTGAGGTTGCTTAACTTTTTCACTTGACCTTACCTTTTTAATAACCCAATGGTCCCTACCTAAGTTGATCGAACTCTTCACTTTCGATACCGCACCCAGGTTGATACGACATGGTGTGAGATCCGTACTGCATTTGGTCAACTGATTTTGGATACTTTGATCAAAATAAGTGGAGAAATTTGGAGTAGATGTAGTGAGTTTTGTATTAATAACAAAAGCTAAGGTGAAATTGAAGTAAAAATGGAGTACTTAGTATATATGAAATTCTATTTCAGTCCTTTTTCCTTATATCATATTTTGAGATTCTCCTTTTGTTCAATATTTTTACCTCATAATAGCTTGTAAATTTTTGTAATCTCGACATATAACTCTATTTTTAGATATTTGAATTAGTTTTAGCCGAATCCCCCCACCTGTATTTGTACCTCGAACCGTACCCTAATTCATAAAATTTATATAGTGAAGCCGACCTCTAGATTCACACCTGTATTGGACACCAGCACCTGAGTCTGAACAACTTAGGTTCCTGTAATAAGTTGTCTTTTCTGTGCTATAGGTTATTAAGCTTAAAAAGATTGTGTAACTTCCTAACTTTTGGTTTCATGTTTATCTCTCTGTGGTCTAGATCTACTTTGTGATGTCATAACGTTTTTTTGTGCATCAGTTCAAGATTGCTCTTTGCCAGTTATCTGTAACTACCGACAAGGAGAGAAATATTGTTCATGCTCAGAGGGCAATAGAAGATGCTGCAGACAAGGGTGCTCAACTTATTCTTCTCCCTGTAAGATCCTTTTATTTTCTGAAAATTATGGCTGAATTTTTTCAATGCAATCGTCTCTCTGGACTCCATAAAGGTGGAGACAAATTTTGTTATAATAGGGTATATACATTTTATCTGTTATTTACCAAGATTCATCACTGTGACGTACGTGGTTTATGAGAGACTGAGTTAATTGGTATTAGAATTCCACGAATAATGGGCCTATAATTTGTCTGAACTAAATTATGGGTTTAGGCATTTCAAAATATGAAAGCAGATTGATATAAAAAATCAAAAGGTTTAGAATGCTCTCAGGCACATATATCAAGTCTTGTCAACTTTTAGTTTAAAGTTTTTTACCTTTAGGTTTCAGATAAGTGGATCAAGCTCGCTGGAACACATCCAATAGGGGGAAGATAACATCTTTTACAACGTAGGTTTCAAGTCCTACGACATTACGAGATGTAAAGACAAAGTTGGGAGTTGGTTTGTATGGGCAAAACGCAGCCGACGTTGGATGAGAAGAGTGGAAATTAGCATTAAAGTATTGAAATGGTTAGTTACAGTATTTATTGAAGCGTCCAAAGTGCAGGGGAGGACAGTTAAGAGGTGGAACATGAAGGACCACTTTGCAGACTTCTACTGCACTCTCAAATACAATAGTAGCGGGAGATACATCAGTTTTATAGCATTACAAGGTCAAAAAAAATCAGTCATAATTACTCCAGAATCTACATTCAAAGGAGGTCTGCGAAATATAGCTCACAGGATTGCTGGGTTTATTTATGAACCAAAAGAAACACAGGGGTTAACAGTAAATGACAACAAACAATTCCACAGGTCCTACAAAGAAGTTCTCTTCCGTGACAGATGGGTGACGGAGGCAACATAGAAGGAAGATATACTAAGCACAATAAACAGAGTAAGAATCACAGGAGGCAAATCGCAATCAGAAAAGGACCTCTTGAACAGATGCTTAGTAGGGAAATTCCAATGCCAAACAAATGAAAACCCTAACTTGAACGATGTTAGAAGATGGGCCTGTAACTCTTGGAAGTTGGAGATAAAAGTCAAAGTGTATGCCATGAACGATGGCCATTTTATGTTTGAACTACCGTCAAGACTAGCAGCAGAGCATGTCATAACAGGCCAATGTGCCTAGAAGAAGATGAAGTTAGATTTTGAATGGTGGAAACCAACAACTGGCTGCTGGCCGGCAGAGGTAAGGAGAGATTGGGTATGGATGGTCGCAGAAGGTTTTCAAAGAGATCGGTAACCTATGTGGAGGCTATATCGAGACGGAGAAGGAGACCTCTCTCAAAAATCATCTTCATTGGGCTAGAATAAAAGTACAAGGTGACGGCGAACGGATTCCCAGAGAAGTAAAAATAATCTGCTATGATTTCACTTACACCATTTCGGTGTGGTGTGAAGCTCCAGTCATCGTGAAATTCTCAGAGAAGAGGAGAGAGGAGAATGAAAATACTCAGCAGTCAATAACCAAGATCAGCTTTTGCAGATAACAAAAGAGGTAATAGCAACTAAAAAGGTGGATGGGCACGTGGGGTCTTCCAGTGAGAGGTCTCTCATGCGAGTGGCAGATTTAAAAGGGGAGAATATAATGGTTATAACAGACAAAAAAAAAAGGTCAAAGGAAACTGGGCCCAAATTTGGCCCCAATTCTTTTGGACCCAATTGCTTGAGAAAAGGCTAGAGCCCAAGCTTTACAAATCCATTCAGAAGACATTTTTAACATTGAGATAACAGCGAATCAAAGGAAGGAAAATAAAGCTCAAAATTAGATAAGATCATGAATAGGGACGAAAGGGAATTGGAAGTTGCAAGACATATGGTAGACATGACTGGAAAAAATAAGGAAGAACTGGGAGAGAAAAGTACAGCGATAATGGTATAAGCATTGGCAGAGGAGAATACAAATGGAGGAGCCGAGGATGTTATCCCACTGGGCATCCAATTCCCAGAGGAAGACTACAACACACTGAGCACCTCAGAATGGATACAACGAAATATAATCAAATTGTGCTCGAAATTTGGGGTGAGGATGTGAGGAGAGGGCAAAGGAATTATTGATGAAAATTGACACTAATAAGCGAGAAAGGGGAAACAGAGTGAACAACCAACATGCAAGAAGAAAGGGCAATTGGAACTAAAAAACCTGCAACTAGATTCTAAGTTTCACAGCAATGGCTCTAGAAGTAAAGGGGGATATTTTTCCATCATGAATCAATGAATTTAAACATTGTTTCCTGGAACGTGAGGAGACTGCATTGTGGGAAGAAAAGGTGTATGATCAGGAATATGTCAAGAATCTGGAAAGCAGATGTTGTGTGTTTTCAAGAGACAAAACTGGAGACGGGAATTGCAAACATAGTTAAAGAAATTTGGGATAGTAGATGGGAAGTTTATGTGCAACTAGAAGCTAGTGGGACCAGGGGAGGCATACTAATTATGTGGGATAAAAGAATATGGAAAGGGGAAGTAAGTAGTATGGGAGCATACTCAGTTTCATGTTGTTTCTATGGCAAAAACCAGGATTTTAAATGGCACCTAACAGGAGTTTACGCCCCAAATGACAGAGTTGAAAGGGAAGATACTTGGTGGGAAGTGGGGGCAGCTAGAGGTCTATTTAACAGGTGGAGACAGTAAACCATCTCTTTTTACACTGCAAATGGATAGATCAATTATGGCAGATGTTCATTCACAAAAGGAAGATCAAGTGGACAAAACCAGGGAGAATCACACAAGTTCTAAAATGCTAAAACAATGATGGAAATGCAGAAAAAGAGGAGGAGAGATGGAGGATTGTCCCAGCATGCATCTGGTGGACAATTTGGAATTAAAGGAATCAAAGATGTTTTGAAGGAAAGAACAACAATATTCAGAAGATAAAGATAAACTGCCTAGGTCTTTATTATTTTTGGTGTAAGCAAGTAGTAATAGAAAATTCTGAAGATGTTTTTAATGTTATTGACTGGCTGTAACTAGAAGATATTAAGGCTGATGTAAGTACACATTTTTGGTGGGGAACTACACTTTGATGTAGTATACCTGTGGATATATAGAAGTAAATGTTACCTTTCTCAAAAAAAATATGAAAGCATCAGAAATAGAATCTGTCTCCATCATTAAACTTTTCTACATTTACTATTTCTTTGTTCTTTGTCCTTACATTAGAAAATGGGCCTATAATTCATGTCTGAACTAAATTATTAATTTACTTGCTGAATGTGTATAAATTCTTAATTGTCGATTGTCCTGTGTTTTGTTGGTTATTTTAGATGAACTTGGATGCATCCCTTTGTATTTGAGTCACTGAGAGAGTTCTATGATGTTTCTTTGACATCGTCTAACTCGCGATGCGATGCTTGCATTCTGTCTTAATTTTGCTTACATTCACTAGCTTGCTTCCATTAGTATCTCTTTTTACTCTTCGCTTCTTGTTTTTAAGTGAGGCTTAAATTAACTCAATTGCTTCCTGCTATGACAGGAAATATGGAATAGTCCATATTCCAATGATAGTTTTCCAGTATATGCAGAGGACATTGATGCTGGCGGAGATGCATCTCCTTCAACTAGAATGTTATCTGAAGTTTCTCGGAGTCGAAAGATTACAATTATTGGTGGCTCTATACCTGAACGCAGCGGTGACAAATTATATAACAGT</genome_strand>
        <mrna_strand>AAGATTATGCCACCGGAACCTCCTTCCCACTACAAACCCCTCTCTCACTTGCAGATTTTTCTCTAATTCTGTTATTCATCACACCTCCTTCCACAATTATAAGACAAACTTCCCCAAGTTTTTGGTTTCTGCAACTATGGAAACTTCCTTCAAGCCTGAGGAAGCTAGGGTTCCTGCAGCGCTTCCCTTGCCTACTCCTCCCGTCACCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGATTGCTCTTTGCCAGTTATCTGTAACTACCGACAAGGAGAGAAACATTGCTCATGCTCAGCAGGCAATAGAAAATGCTGCAGACAAGGGTGCTCAGCTTATTCTTCTCCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATATGGAATAGTCCATATTCCAATGATAGTTTTCCATTATCTGCAGAGGACATTGATGCTGGTGGAGATGCATCTCCTTCAACTAAGATGTTATCTGAAGTTTCTCGGAGTCGAAAGATTACAATTATTGGTGGCTCTATACCTGAACGCAGCGGTGATAACTTATATAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E573431" ref_strand="+" ref_description="SGN-E573431 [32741]">
      <seq>tttttaaatatcaaaaagaatattgtcattttcttcgttgtttatttgcttattatgatggtagattatctattacttctgatatgggacgtagtcctaatggtaatgattattttacaattactgtccattggattgaccatgaatggaacatgcaaaaacgaatattaggatataaatatgttgaagaaactaaaaccggtgcttatatagcaacaaaaataggccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="112914" stop="112083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112614" g_stop="112382" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E573431" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112614" e_stop="112382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAAATATCAAAAAGAATATTCTCATTTTCTTTGTTGTTTATTTGCTTATTATGATGGTAGATTATCTATTACTTCTGATATGGGACGTAGTCCTAATGGTAACGATTATTTTTTACACTTACTGTCCATTGGATTGACCGTGAATGGAACATGCAAAAACGAATATTAGCGTATAAATATGTTGAAGAAACTAAAATCGGTTCTTATATAGCATTAAAAGTAGGCTCTA</genome_strand>
        <mrna_strand>TTTTTAAATATCAAAAAGAATATTGTCATTTTCTTCGTTGTTTATTTGCTTATTATGATGGTAGATTATCTATTACTTCTGATATGGGACGTAGTCCTAATGGTAATGATTA--TTTTACAATTACTGTCCATTGGATTGACCATGAATGGAACATGCAAAAACGAATATTAGGATATAAATATGTTGAAGAAACTAAAACCGGTGCTTATATAGCAACAAAAATAGGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E236236" ref_strand="+" ref_description="SGN-E236236 [cLED-20-L9]">
      <seq>tcaccatgatctcctatcctaaaacatgttttctcgaagcatttggactatcaatttggccatttgtgttttcaaaattttgtgagttttgatttgactggtctaaaatgcatacactctttcgtgtcctgcttcttttcctttctaatgcttctctcgatttctagtggtggtgcaactcatgataactcttatagaattgcattttcagtttatcttttcatgtctctatataacattgcaactttgaaaaaatattcagaagcatgtccctggttacattctatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="135226" stop="134337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134926" g_stop="134637" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E236236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134926" e_stop="134637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCATGATCTCCTATCCTAAAACATGTTTTCTCGAAGCATTTGGACTATCAATTTGGCCATTTGTGTTTTCAAAATTTTGTGAGTTTTGATTTGACTGGTCTAAAATGCATACACTCTTTCGTGTCCTGCTTCTTTTCCTTTCTAATGCTTCTCTCGATTTCTAGTGGTGGTGCAACTCATGATAACTCTTATAGAATTGCATTTTCAGTTTATCTTTTCATGTCTCTATATAACATTGCAACTTTGAAAAAATATTCAGAAGCATGTCCCTGGTTACATTCTATCTA</genome_strand>
        <mrna_strand>TCACCATGATCTCCTATCCTAAAACATGTTTTCTCGAAGCATTTGGACTATCAATTTGGCCATTTGTGTTTTCAAAATTTTGTGAGTTTTGATTTGACTGGTCTAAAATGCATACACTCTTTCGTGTCCTGCTTCTTTTCCTTTCTAATGCTTCTCTCGATTTCTAGTGGTGGTGCAACTCATGATAACTCTTATAGAATTGCATTTTCAGTTTATCTTTTCATGTCTCTATATAACATTGCAACTTTGAAAAAATATTCAGAAGCATGTCCCTGGTTACATTCTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E319802" ref_strand="+" ref_description="SGN-E319802 [cTOB-12-J21]">
      <seq>aagggccatcggatttgggattggaatcctgatggttgtgagattggaatatgtggtcctcattgaaaggcattcgaaaagagattcagattcaaaagacatccaaacagaattccaggagaaaaactatccttgtattttgaatttgaatccaactccgaagttggattcttgtttgctgctctcgcgaaggtaaactgcctcgctttaatatatatttttcctcaaactccagttagtcgattttgctgatttttgatcatttcaatttgatatgatgtttagattttgtctttaagttagtaaagttgagctttctgtttagcaatgatacacatatctctcatattatctttgtatttttgaatatatattaaggtgtgtgtatgaatgactgagaatgttaagttttctcgactgcaatataacctaatctagttctgaaaagtcatagcttactttctaattttgaacgtttcattccctctatttgttggttcaaggactgctgtttgacattttaactttgaaatcttatcctctaagttgtcccgaagtcttggtcacctggtttaacattctcgttcatttatacttttctgtcaccatgatctcctatcctaaaacatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="135828" stop="134595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135528" g_stop="134895" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E319802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135528" e_stop="134895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGCCATCGGATTTGGGATTGGAATCCTGATGGTTGTGAGATTGGAATATGTGGTCCTCATTGAAAGGCATTCGAAAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAGGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATATTAAGGTGTGTGTATGAATGACTGAGAATGTTAAGTTTTCTCGACTGCAATATAACCTAATCTAGTTCTGAAAAGTCATAGCTTACTTTCTAATTTTGAACGTTTCATTCCCTCTATTTGTTGGTTCAAGGACTGCTGTTTGACATTTTAACTTTGAAATCTTATCCTCTAAGTTGTCCCGAAGTCTTGGTCACCTGGTTTAACATTCTCGTTCATTTATACTTTTCTGTCACCATGATCTCCTATCCTAAAACATGTTTT</genome_strand>
        <mrna_strand>AAGGGCCATCGGATTTGGGATTGGAATCCTGATGGTTGTGAGATTGGAATATGTGGTCCTCATTGAAAGGCATTCGAAAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAGGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATATTAAGGTGTGTGTATGAATGACTGAGAATGTTAAGTTTTCTCGACTGCAATATAACCTAATCTAGTTCTGAAAAGTCATAGCTTACTTTCTAATTTTGAACGTTTCATTCCCTCTATTTGTTGGTTCAAGGACTGCTGTTTGACATTTTAACTTTGAAATCTTATCCTCTAAGTTGTCCCGAAGTCTTGGTCACCTGGTTTAACATTCTCGTTCATTTATACTTTTCTGTCACCATGATCTCCTATCCTAAAACATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E215154" ref_strand="+" ref_description="SGN-E215154 [cLEC-78-N8]">
      <seq>cttttgaaccatgacagatctcaaaagccacaccaccgccgctgctatagctgaaaaggtggagaatgtgaagggccatcggatttgggattggaatcctgatggttgtgagattggaatatgtggtcctcattgaaaggcattcgaaaagagattcagattcaaaagacatccaaacagaattccaggagaaaaactatccttgtattttgaatttgaatccaactccgaagttggattcttgtttgctgctctcgcgaaggtaaactgcctcgctttaatatatatttttcctcaaactccagttagtcgattttgctgatttttgatcatttcaatttgatatgatgtttagattttgtctttaagttagtaaagttgagctttctgtttagcaatgatacacatatctctcatattatctttgtatttttgaatatatattaaggtgtgtgtatgaatgactgagaatgttaagttttctcgactgcaatataacctaatctagttctgaaaagtcatagcttactttctaattttgaacgtttcattccctctatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="135898" stop="134735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135598" g_stop="135035" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E215154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135598" e_stop="135035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGAACCATGACAGATCTCAAAAGCCACACCACCGCCGCTGCTATAGCTGAAAAGGTGGAGAATGTGAAGGGCCATCGGATTTGGGATTGGAATCCTGATGGTTGTGAGATTGGAATATGTGGTCCTCATTGAAAGGCATTCGAAAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAGGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATATTAAGGTGTGTGTATGAATGACTGAGAATGTTAAGTTTTCTCGACTGCAATATAACCTAATCTAGTTCTGAAAAGTCATAGCTTACTTTCTAATTTTGAACGTTTCATTCCCTCTATTTGT</genome_strand>
        <mrna_strand>CTTTTGAACCATGACAGATCTCAAAAGCCACACCACCGCCGCTGCTATAGCTGAAAAGGTGGAGAATGTGAAGGGCCATCGGATTTGGGATTGGAATCCTGATGGTTGTGAGATTGGAATATGTGGTCCTCATTGAAAGGCATTCGAAAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAGGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATATTAAGGTGTGTGTATGAATGACTGAGAATGTTAAGTTTTCTCGACTGCAATATAACCTAATCTAGTTCTGAAAAGTCATAGCTTACTTTCTAATTTTGAACGTTTCATTCCCTCTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E241701" ref_strand="+" ref_description="SGN-E241701 [cLED-36-F21]">
      <seq>aaagagattcagattcaaaagacatccaaacagaattccaggagaaaaactatccttgtattttgaatttgaatccaactccgaagttggattcttgtttgctgctctcgcgaaggtaaactgcctcgctttaatatatatttttcctcaaactccagttagtcgattttgctgatttttgatcatttcaatttgatatgatgtttagattttgtctttaagttagtaaagttgagctttctgtttagcaatgatacacatatctctcatattatctttgtatttttgaatatatattaaggagtgtgtatgaatgactgagaatgttaagttttctcgactgcaatataacctaatctagttctgaaaagtcatagcttactttctaattttgaacgtttcattccctctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="135751" stop="134738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135451" g_stop="135038" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E241701" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135451" e_stop="135038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAGGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATATTAAGGTGTGTGTATGAATGACTGAGAATGTTAAGTTTTCTCGACTGCAATATAACCTAATCTAGTTCTGAAAAGTCATAGCTTACTTTCTAATTTTGAACGTTTCATTCCCTCTATT</genome_strand>
        <mrna_strand>AAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAGGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATATTAAGGAGTGTGTATGAATGACTGAGAATGTTAAGTTTTCTCGACTGCAATATAACCTAATCTAGTTCTGAAAAGTCATAGCTTACTTTCTAATTTTGAACGTTTCATTCCCTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E248252" ref_strand="+" ref_description="SGN-E248252 [cLEF-55-M5]">
      <seq>tgaaaaggtggagaatgtgaagggccatcggatttgggattggaagcctgatggttgtgagattggaatatgtggtcctcattgaaaggcattcgaaaagagattcagattcaaaagacatccaaacagaattccaggagaaaaactatccttgtattttgaatttgaatccaactccgaagttggattcttgtttgctgctctcgcgaaagtaaactgcctcgctttaatatatatttttcctcaaactccagttagtcgattttgctgatttttgatcatttcaatttgatatgatgtttagattttgtctttaagttagtaaagttgagctttctgtttagcaatgatacacatatctctcatattatctttgtatttttgaatatatattaaggtgtgtgtatgaatgactgagaatgttaagttttctcgactgcaatataacctaatctagttctgaaaagtcatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="135847" stop="134774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135547" g_stop="135074" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E248252" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135547" e_stop="135074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGGTGGAGAATGTGAAGGGCCATCGGATTTGGGATTGGAATCCTGATGGTTGTGAGATTGGAATATGTGGTCCTCATTGAAAGGCATTCGAAAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAGGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATATTAAGGTGTGTGTATGAATGACTGAGAATGTTAAGTTTTCTCGACTGCAATATAACCTAATCTAGTTCTGAAAAGTCATAGC</genome_strand>
        <mrna_strand>TGAAAAGGTGGAGAATGTGAAGGGCCATCGGATTTGGGATTGGAAGCCTGATGGTTGTGAGATTGGAATATGTGGTCCTCATTGAAAGGCATTCGAAAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAAGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATATTAAGGTGTGTGTATGAATGACTGAGAATGTTAAGTTTTCTCGACTGCAATATAACCTAATCTAGTTCTGAAAAGTCATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E545158" ref_strand="+" ref_description="SGN-E545158 [TUS-67-N20]">
      <seq>tttttttttttcagaactagattaggttatanttgcagtcgagaaaacttaacattctcagtcattcatacacacaccttaatatatattcaaaaatacaaagataatatgagagatatgtgtatcattgctaaacagaaagctcaactttactaacttaaagacaaaatctaaacatcatatcaaattgaaatgatcaaaaatcagcaaaatcgactaactggagtttgaggaaaaatatatattaaagcgaggcagtttaccttcgcgagagcagcaaacaagaatccaacttcggagttggattcaaattcaaaatacaaggatagtttttctcctggaattctgtttggatgtcttttgaatctgaatctcttttcgaatgcctttcaatgaggaccacatattccaatctcacaaccatcaggattccaatcccaaatccgatggcccttcacattctccaccttttcagctatagcagcggcggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="+" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="134782" stop="135865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135075" g_stop="135565" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="+" ref_id="SGN-E545158" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135075" e_stop="135565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGACTTTTCAGAACTAGATTAGGTTATA-TTGCAGTCGAGAAAACTTAACATTCTCAGTCATTCATACACACACCTTAATATATATTCAAAAATACAAAGATAATATGAGAGATATGTGTATCATTGCTAAACAGAAAGCTCAACTTTACTAACTTAAAGACAAAATCTAAACATCATATCAAATTGAAATGATCAAAAATCAGCAAAATCGACTAACTGGAGTTTGAGGAAAAATATATATTAAAGCGAGGCAGTTTACCTTCGCGAGAGCAGCAAACAAGAATCCAACTTCGGAGTTGGATTCAAATTCAAAATACAAGGATAGTTTTTCTCCTGGAATTCTGTTTGGATGTCTTTTGAATCTGAATCTCTTTTCGAATGCCTTTCAATGAGGACCACATATTCCAATCTCACAACCATCAGGATTCCAATCCCAAATCCGATGGCCCTTCACATTCTCCACCTTTTCAGCTATAGCAGCGGCGGTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTCAGAACTAGATTAGGTTATANTTGCAGTCGAGAAAACTTAACATTCTCAGTCATTCATACACACACCTTAATATATATTCAAAAATACAAAGATAATATGAGAGATATGTGTATCATTGCTAAACAGAAAGCTCAACTTTACTAACTTAAAGACAAAATCTAAACATCATATCAAATTGAAATGATCAAAAATCAGCAAAATCGACTAACTGGAGTTTGAGGAAAAATATATATTAAAGCGAGGCAGTTTACCTTCGCGAGAGCAGCAAACAAGAATCCAACTTCGGAGTTGGATTCAAATTCAAAATACAAGGATAGTTTTTCTCCTGGAATTCTGTTTGGATGTCTTTTGAATCTGAATCTCTTTTCGAATGCCTTTCAATGAGGACCACATATTCCAATCTCACAACCATCAGGATTCCAATCCCAAATCCGATGGCCCTTCACATTCTCCACCTTTTCAGCTATAGCAGCGGCGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E545159" ref_strand="+" ref_description="SGN-E545159 [TUS-67-N20]">
      <seq>caccgccgctgctatagctgaaaaggtggagaatgtgaagggccatcggatttgggattggaatcctgatggttgtgagattggaatatgtggtcctcattgaaaggcattcgaaaagagattcagattcaaaagacatccaaacagaattccaggagaaaaactatccttgtattttgaatttgaatccaactccgaagttggattcttgtttgctgctctcgcgaaggtaaactgcctcgctttaatatatatttttcctcaaactccagttagtcgattttgctgatttttgatcatttcaatttgatatgatgtttagattttgtctttaagttagtaaagttgagctttctgtttagcaatgatacacatatctctcatattatctttgtatttttgaatatatattaaggtgtgtgtatgaatgactgagaatgttaagttttctcgactgcaatataacctaatctagttctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="135865" stop="134782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135565" g_stop="135075" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E545159" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135565" e_stop="135075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGCCGCTGCTATAGCTGAAAAGGTGGAGAATGTGAAGGGCCATCGGATTTGGGATTGGAATCCTGATGGTTGTGAGATTGGAATATGTGGTCCTCATTGAAAGGCATTCGAAAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAGGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATATTAAGGTGTGTGTATGAATGACTGAGAATGTTAAGTTTTCTCGACTGCAATATAACCTAATCTAGTTCTGAAAAGTCATAG</genome_strand>
        <mrna_strand>CACCGCCGCTGCTATAGCTGAAAAGGTGGAGAATGTGAAGGGCCATCGGATTTGGGATTGGAATCCTGATGGTTGTGAGATTGGAATATGTGGTCCTCATTGAAAGGCATTCGAAAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAGGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATATTAAGGTGTGTGTATGAATGACTGAGAATGTTAAGTTTTCTCGACTGCAATATAACCTAATCTAGTTCTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E298676" ref_strand="+" ref_description="SGN-E298676 [cLET-44-B5]">
      <seq>tgaaaaggtggagaatgtgaagggccatcggatttgggattggaatcctgatggttgtgagattggaatatgtggtcctcattgaaaggcattcgaaaagagattcagattcaaaagacatccaaacagaattccaggagaaaaactatccttgtattttgaatttgaatccaactccgaagttggattcttgtttgctgctctcgcgaaggtaaactgcctcgctttaatatatatttttcctcaaactccagttagtcgattttgctgatttttgatcatttcaatttgatatgatgtttagattttgtctttaagttagtaaagttgagctttctgtttagcaatgatacacatatctctcatattatctttgtatttttgaatatatattaaggtgtgtgtatgaatgactgagaatgttaagttttctcgactgcaatataacctaatctagttctgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="135847" stop="134782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135547" g_stop="135082" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="467" polyA_stop="477"/>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E298676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135547" e_stop="135082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGGTGGAGAATGTGAAGGGCCATCGGATTTGGGATTGGAATCCTGATGGTTGTGAGATTGGAATATGTGGTCCTCATTGAAAGGCATTCGAAAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAGGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATATTAAGGTGTGTGTATGAATGACTGAGAATGTTAAGTTTTCTCGACTGCAATATAACCTAATCTAGTTCTGAAAA</genome_strand>
        <mrna_strand>TGAAAAGGTGGAGAATGTGAAGGGCCATCGGATTTGGGATTGGAATCCTGATGGTTGTGAGATTGGAATATGTGGTCCTCATTGAAAGGCATTCGAAAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAGGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATATTAAGGTGTGTGTATGAATGACTGAGAATGTTAAGTTTTCTCGACTGCAATATAACCTAATCTAGTTCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E248132" ref_strand="+" ref_description="SGN-E248132 [cLEF-55-C17]">
      <seq>agaatgtgaagggccatcggatttgggattggaatcctgatggttgtgagattggaatatgtggtcctcattgaaaggcattcgaaaagagattcagattcaaaagacatccaaacagaattccaggagaaaaactatccttgtattttgaatttgaatccaactccgaagttggattcttgtttgctgctctcgcgaaggtaaactgcctcgctttaatatatatttttcctcaaactccagttagtcgattttgctgatttttgatcatttcaatttgatatgatgtttagattttgtctttaagttagtaaagttgagctttctgtttagcaatgatacacatatctctcatattatctttgtatttttgaatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="-" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="135836" stop="134856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135536" g_stop="135156" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="-" ref_id="SGN-E248132" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135536" e_stop="135156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGAAGGGCCATCGGATTTGGGATTGGAATCCTGATGGTTGTGAGATTGGAATATGTGGTCCTCATTGAAAGGCATTCGAAAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAGGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATA</genome_strand>
        <mrna_strand>AGAATGTGAAGGGCCATCGGATTTGGGATTGGAATCCTGATGGTTGTGAGATTGGAATATGTGGTCCTCATTGAAAGGCATTCGAAAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAGGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-eERHXL/sgn_ests_tomato_potato" ref_id="SGN-E214722" ref_strand="+" ref_description="SGN-E214722 [cLEC-79-D10]">
      <seq>gaatattatatgcatcaaaagactctcattactcagtattcaaagctgcaagaatgtatagaatggattcagaaacaatcaacacatcagtaaatggagagatggattattcagatttaagagcaaagttacttcaaaataaggataaaccagctattataaatgtcacaattggtatatacctatactccaacctcttatcatttttcattttttcttttatgtgatcaaatcagtcatcttaagtcttttccattgatggttttttcaattataggaactacattcaaaggagcaatcgatgacctggatgttattcttgaaatactcaaagaatgtggctattcacaagatcgattttacattcactgtgatgcagcactatgtggtcttatgaccccttttataaacaatgtgagtttcacttcttacttctaattacaatatctttagtaattttgagagcaacattctaattattctttgtgcaatttgaacagatgattagtttcaagaagccaattggaagtgtcacaatttctggacacaagtttttgggatgtccaatgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0126D21-YzZN3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0126D21.1" temp_strand="+" temp_description="C07SLm0126D21.1  AC212658.1 htgs_phase:1 submitted_to_sgn_as:gi|158262151|gb|AC212658.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0126D21, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces">
        <position start="141190" stop="142342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141503" g_stop="142042" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="573" r_length="537" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0126D21.1" gen_strand="+" ref_id="SGN-E214722" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0126D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141503" e_stop="142042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCAAAGCTGCAAGAATGTATAGAATGGATTCAGAAACAATCAACACATCAGTAAATGGAGAGATGGACTATTCAGATTTAAGAGCAAAGTTACTTCAAAATAAGGACAAACCAGCTATTATAAATGTCACAATTGGTATATACGTATACTCCAACCTCTTATCATTTTTCATTTTTTCTTTTATGTGATCAAACCAGTCATCTTAAGTCTTTTCCATTGATGGTTCTTTTAACTATAGGAACTATGTTCAAAGGAGCTATTGATGATGTTGATGTTATTCTTGAAACACTCAAAGAATGTGGCTATTCACAAGATCGATTTTACATCCACTGTGATGCAGCACTATGTGGTCTTATGACCCCTTTTGTAAACAATGTGAGTTTCAATTGCTTCTTACTTCTAATTACAATATCTTTAGTAATTCTCAAAGCGACGATCTAATTATTCTTT-TTAATTTTGAACAGATGATTAGTTTCAACAATCCAATTGGAAGTGTCACAATTTCTAGTCACAAGCTCTTAGGATGCCCAATGCCTT</genome_strand>
        <mrna_strand>TATTCAAAGCTGCAAGAATGTATAGAATGGATTCAGAAACAATCAACACATCAGTAAATGGAGAGATGGATTATTCAGATTTAAGAGCAAAGTTACTTCAAAATAAGGATAAACCAGCTATTATAAATGTCACAATTGGTATATACCTATACTCCAACCTCTTATCATTTTTCATTTTTTCTTTTATGTGATCAAATCAGTCATCTTAAGTCTTTTCCATTGATGGTTTTTTCAATTATAGGAACTACATTCAAAGGAGCAATCGATGACCTGGATGTTATTCTTGAAATACTCAAAGAATGTGGCTATTCACAAGATCGATTTTACATTCACTGTGATGCAGCACTATGTGGTCTTATGACCCCTTTTATAAACAATGTGAGTTTC-A---CTTCTTACTTCTAATTACAATATCTTTAGTAATTTTGAGAGCAACATTCTAATTATTCTTTGTGCAATTTGAACAGATGATTAGTTTCAAGAAGCCAATTGGAAGTGTCACAATTTCTGGACACAAGTTTTTGGGATGTCCAATGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="16410" PGL_stop="15878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16410" e_stop="15878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="16410" e_stop="15878" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16410" stop="15878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGCGACGGATCGTCGTGGTCACGACGGACGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTCTGCTGCTTTCTTCATTACCCTCGACGGCAAGTATGACGGACCGTCATAGGCACAACAGTCTGTCGAGGGTCTTCATTCCAAAACACTTCAACTCTTGGAATATGGATACTGGATTACTTCTCTGAACTTCATGACGAACCTGCAGGACGGACCGTCATAGACACGACGGACCGTCACAAGATTCGTAACCCCACACTTAGTCAGATTTCTCTATCTTCCTTCAGCAGCTGTACTATGCTGCCACCTACGGACTGTCACAAGCACAACGGACCGTCACAAGTTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTTCGTATTCATCTTTGGACAGATTTTCTTGCAAAATAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGATTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAGTTATCACTCA</gDNA_template>
            <first_frame> S  R  R  I  V  V  V  T  T  D  V  M  D  S  V  V  P  Y  L  C  N  F  F  C  C  F  L  H  Y  P  R  R  Q  V  *  R  T  V  I  G  T  T  V  C  R  G  S  S  F  Q  N  T  S  T  L  G  I  W  I  L  D  Y  F  S  E  L  H  D  E  P  A  G  R  T  V  I  D  T  T  D  R  H  K  I  R  N  P  T  L  S  Q  I  S  L  S  S  F  S  S  C  T  M  L  P  P  T  D  C  H  K  H  N  G  P  S  Q  V  P  *  V  V  S  S  A  F  L  R  S  K  S  S  Y  S  S  L  D  R  F  S  C  K  I  K  R  N  L  Y  K  N  *  H  K  K  D  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  V  I  T   </first_frame>
            <second_frame>  R  D  G  S  S  W  S  R  R  T  S  W  T  P  S  S  H  T  Y  A  I  S  S  A  A  F  F  I  T  L  D  G  K  Y  D  G  P  S  *  A  Q  Q  S  V  E  G  L  H  S  K  T  L  Q  L  L  E  Y  G  Y  W  I  T  S  L  N  F  M  T  N  L  Q  D  G  P  S  *  T  R  R  T  V  T  R  F  V  T  P  H  L  V  R  F  L  Y  L  P  S  A  A  V  L  C  C  H  L  R  T  V  T  S  T  T  D  R  H  K  F  R  R  W  S  L  L  H  F  F  A  Q  N  L  R  I  H  L  W  T  D  F  L  A  K  *  R  E  T  Y  I  K  I  S  T  K  R  I  L  D  T  L  N  L  R  K  K  Y  *  *  Y  R  E  T  T  V  Y  Q  L  S  L  </second_frame>
            <third_frame>   A  T  D  R  R  G  H  D  G  R  H  G  L  R  R  P  I  L  M  Q  F  L  L  L  L  S  S  L  P  S  T  A  S  M  T  D  R  H  R  H  N  S  L  S  R  V  F  I  P  K  H  F  N  S  W  N  M  D  T  G  L  L  L  *  T  S  *  R  T  C  R  T  D  R  H  R  H  D  G  P  S  Q  D  S  *  P  H  T  *  S  D  F  S  I  F  L  Q  Q  L  Y  Y  A  A  T  Y  G  L  S  Q  A  Q  R  T  V  T  S  S  V  G  G  L  F  C  I  S  S  L  K  I  F  V  F  I  F  G  Q  I  F  L  Q  N  K  E  K  L  I  *  K  L  A  Q  K  G  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  R  Y  I  S  Y  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0126D21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16305" stop="16054"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTVIGTTVCRGSSFQNTSTLGIWILDYFSELHDEPAGRTVIDTTDRHKIRNPTLSQISLSSFSSCTMLPPTDCHKHNGPSQVP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0126D21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16181" stop="15984"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRTVTRFVTPHLVRFLYLPSAAVLCCHLRTVTSTTDRHKFRRWSLLHFFAQNLRIHLWTDFLAK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="18491" PGL_stop="17902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18491" e_stop="17902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="18491" e_stop="17902" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18491" stop="17902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAGCTTTATTATTCCGGGAGATCTTCTCTAATTTTTCGGCAATCTCAGCATAAGGACATTCCCCATGATATCCACCTGCTATAGTGTCCAACACCACTTTATTATTATCATCCTGTCCCCGATAGAAGTATTCCTTCAATGACTCATCATCGATACGGTAATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCCAAGAATTACTAACTGACTCTTCTGGTAGTTCCACAAAGTTATTCACCCTGTCTTTGTGGTTTAGTTTCTTAGAGACTGGATAATAGCGTGCTAAGAAAACATCCCTTAGTTGGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCATATAGCAGCCTCTCCCATCAGTGAGAGAGGAAACACTCTTAGCCCAATTACATCTAAATCCAAATCAGGCCTCCCTACACAACTTTTACACACTGCCCTCACCTTAGCTATATGGGCATGTGGATCCTCAGAAGGTAGCCCTGAAAAGAAACCTCTAGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</gDNA_template>
            <first_frame> T  A  K  V  F  L  P  V  S  D  F  L  V  L  Q  A  L  L  F  R  E  I  F  S  N  F  S  A  I  S  A  *  G  H  S  P  *  Y  P  P  A  I  V  S  N  T  T  L  L  L  S  S  C  P  R  *  K  Y  S  F  N  D  S  S  S  I  R  *  F  G  T  L  L  K  N  E  V  N  L  S  Q  E  L  L  T  D  S  S  G  S  S  T  K  L  F  T  L  S  L  W  F  S  F  L  E  T  G  *  *  R  A  K  K  T  S  L  S  W  F  Q  V  K  I  E  L  Y  G  S  S  V  N  H  I  A  A  S  P  I  S  E  R  G  N  T  L  S  P  I  T  S  K  S  K  S  G  L  P  T  Q  L  L  H  T  A  L  T  L  A  I  W  A  C  G  S  S  E  G  S  P  E  K  K  P  L  A  V  S  I  C  I  R  L  L  V  T  T   </first_frame>
            <second_frame>  L  R  R  C  F  S  L  Y  Q  T  S  *  Y  S  K  L  Y  Y  S  G  R  S  S  L  I  F  R  Q  S  Q  H  K  D  I  P  H  D  I  H  L  L  *  C  P  T  P  L  Y  Y  Y  H  P  V  P  D  R  S  I  P  S  M  T  H  H  R  Y  G  N  L  E  H  F  S  R  M  R  *  I  Y  P  K  N  Y  *  L  T  L  L  V  V  P  Q  S  Y  S  P  C  L  C  G  L  V  S  *  R  L  D  N  S  V  L  R  K  H  P  L  V  G  S  K  *  R  L  S  C  M  G  A  Q  *  T  I  *  Q  P  L  P  S  V  R  E  E  T  L  L  A  Q  L  H  L  N  P  N  Q  A  S  L  H  N  F  Y  T  L  P  S  P  *  L  Y  G  H  V  D  P  Q  K  V  A  L  K  R  N  L  *  Q  *  A  F  A  S  G  Y  *  L  P  Q  </second_frame>
            <third_frame>   C  E  G  V  S  P  C  I  R  L  P  S  T  P  S  F  I  I  P  G  D  L  L  *  F  F  G  N  L  S  I  R  T  F  P  M  I  S  T  C  Y  S  V  Q  H  H  F  I  I  I  I  L  S  P  I  E  V  F  L  Q  *  L  I  I  D  T  V  I  W  N  T  S  Q  E  *  G  E  S  I  P  R  I  T  N  *  L  F  W  *  F  H  K  V  I  H  P  V  F  V  V  *  F  L  R  D  W  I  I  A  C  *  E  N  I  P  *  L  V  P  S  E  D  *  V  V  W  E  L  S  E  P  Y  S  S  L  S  H  Q  *  E  R  K  H  S  *  P  N  Y  I  *  I  Q  I  R  P  P  Y  T  T  F  T  H  C  P  H  L  S  Y  M  G  M  W  I  L  R  R  *  P  *  K  E  T  S  S  S  E  H  L  H  Q  A  T  S  Y  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0126D21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18164" stop="17904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAKKTSLSWFQVKIELYGSSVNHIAASPISERGNTLSPITSKSKSGLPTQLLHTALTLAIWACGSSEGSPEKKPLAVSICIRLLVTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="33011" PGL_stop="33539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33011" e_stop="33539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="33011" e_stop="33539" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33011" stop="33539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGTTGGTTGCAGTACCGTAACATTCTATTCACGATAATGACCTGGTAATATGTTTTCTTGTTGGACTAGGACTTTTCTATCGTCCTTTTTCCAGATTTCTTGAATCATGTCAAGAGAAAATTATATTTGATGCATTGTATAAAATGTTTTGAATAAAGAATGACAATTGAAAAGGAATGAAGTCCTTTACTGTTATTGCACCTACAGCACTATATACTCAGAGTTCCTTTTCTACCATATGTGGATGTGGCAAAAGCCAAGGTCGTGGACATTTCTCAAATGAAGGATTCAACAGTCTTAAATCGTGAATTTCATAACTCGGTTCATATCAATTCTACTTAATCTCAAAATTCAGATAATGTTCGAATTTATTTAATTGAAAGAAAGAGTCATATTACATGTGTTTGTCCACCTCCTAGGAGTAATAATGGCAACAAAGTTTCTGGACCACCTGTTTTCAATTTAGCAAAAACTTTATTGTCACAAAATTGATTAATAAATAGTAACACCATACATCATTTTACAA</gDNA_template>
            <first_frame> K  S  W  L  Q  Y  R  N  I  L  F  T  I  M  T  W  *  Y  V  F  L  L  D  *  D  F  S  I  V  L  F  P  D  F  L  N  H  V  K  R  K  L  Y  L  M  H  C  I  K  C  F  E  *  R  M  T  I  E  K  E  *  S  P  L  L  L  L  H  L  Q  H  Y  I  L  R  V  P  F  L  P  Y  V  D  V  A  K  A  K  V  V  D  I  S  Q  M  K  D  S  T  V  L  N  R  E  F  H  N  S  V  H  I  N  S  T  *  S  Q  N  S  D  N  V  R  I  Y  L  I  E  R  K  S  H  I  T  C  V  C  P  P  P  R  S  N  N  G  N  K  V  S  G  P  P  V  F  N  L  A  K  T  L  L  S  Q  N  *  L  I  N  S  N  T  I  H  H  F  T  </first_frame>
            <second_frame>  K  V  G  C  S  T  V  T  F  Y  S  R  *  *  P  G  N  M  F  S  C  W  T  R  T  F  L  S  S  F  F  Q  I  S  *  I  M  S  R  E  N  Y  I  *  C  I  V  *  N  V  L  N  K  E  *  Q  L  K  R  N  E  V  L  Y  C  Y  C  T  Y  S  T  I  Y  S  E  F  L  F  Y  H  M  W  M  W  Q  K  P  R  S  W  T  F  L  K  *  R  I  Q  Q  S  *  I  V  N  F  I  T  R  F  I  S  I  L  L  N  L  K  I  Q  I  M  F  E  F  I  *  L  K  E  R  V  I  L  H  V  F  V  H  L  L  G  V  I  M  A  T  K  F  L  D  H  L  F  S  I  *  Q  K  L  Y  C  H  K  I  D  *  *  I  V  T  P  Y  I  I  L  Q </second_frame>
            <third_frame>   K  L  V  A  V  P  *  H  S  I  H  D  N  D  L  V  I  C  F  L  V  G  L  G  L  F  Y  R  P  F  S  R  F  L  E  S  C  Q  E  K  I  I  F  D  A  L  Y  K  M  F  *  I  K  N  D  N  *  K  G  M  K  S  F  T  V  I  A  P  T  A  L  Y  T  Q  S  S  F  S  T  I  C  G  C  G  K  S  Q  G  R  G  H  F  S  N  E  G  F  N  S  L  K  S  *  I  S  *  L  G  S  Y  Q  F  Y  L  I  S  K  F  R  *  C  S  N  L  F  N  *  K  K  E  S  Y  Y  M  C  L  S  T  S  *  E  *  *  W  Q  Q  S  F  W  T  T  C  F  Q  F  S  K  N  F  I  V  T  K  L  I  N  K  *  *  H  H  T  S  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0126D21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="57646" PGL_stop="56913"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57646" e_stop="56913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="57646" e_stop="56913" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57646" stop="56913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGGGTCTTCGTTCAAAAACACTTCAACTCTTGGAATATGGGTACCACGATTACTTCTCTGAACTTCATGAGAACCTGCAGGACGGACCGTCATAGACACGACTGACCGTCACAAGCTTCGTAACCCCACACTTAGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTATGGACCGTCAGAAGCATGGCGGACTGTCACAAGCACGACGGACCGTCACAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCACTTAAAATCTCCGCATTCATCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATATAAACATTAGCACAAAAAGTCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACTACGGTATATCAACACCCTCAACTCAAATTTGTTGTTTGTCCTCAAGCGACACACTATGACTCAATACAAAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCAATTAATCTCATTAAATCTATGCATACTATCATTATTAGGCTTGAATTATGTGGGATCAGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTTAATTTCTCACCGAGGTGCTAACAATTTCGGTATTGCAACTAATGTCCTCACTTTAAAATAAAATCCTCATTTTTCACACAATGATTTCAATTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> R  G  S  S  F  K  N  T  S  T  L  G  I  W  V  P  R  L  L  L  *  T  S  *  E  P  A  G  R  T  V  I  D  T  T  D  R  H  K  L  R  N  P  T  L  S  Q  T  S  P  S  S  F  S  S  C  T  T  L  P  P  M  D  R  Q  K  H  G  G  L  S  Q  A  R  R  T  V  T  S  S  V  G  G  L  F  C  I  S  S  L  K  I  S  A  F  I  F  G  Q  I  S  C  K  I  K  R  N  L  Y  K  H  *  H  K  K  S  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  Y  G  I  S  T  P  S  T  Q  I  C  C  L  S  S  S  D  T  L  *  L  N  T  K  S  L  Y  N  S  I  H  V  L  S  F  A  I  I  W  L  S  I  P  I  N  L  I  K  S  M  H  T  I  I  I  R  L  E  L  C  G  I  R  T  *  H  R  L  T  M  H  *  H  L  S  S  L  I  S  H  R  G  A  N  N  F  G  I  A  T  N  V  L  T  L  K  *  N  P  H  F  S  H  N  D  F  N  L  S  I  R  I   </first_frame>
            <second_frame>  E  G  L  R  S  K  T  L  Q  L  L  E  Y  G  Y  H  D  Y  F  S  E  L  H  E  N  L  Q  D  G  P  S  *  T  R  L  T  V  T  S  F  V  T  P  H  L  V  R  L  P  H  L  P  S  A  A  A  L  R  C  H  L  W  T  V  R  S  M  A  D  C  H  K  H  D  G  P  S  Q  A  P  *  V  V  S  S  A  F  L  H  L  K  S  P  H  S  S  L  D  R  F  P  A  K  *  R  E  T  Y  I  N  I  S  T  K  S  L  L  D  T  L  N  L  R  K  K  Y  *  *  Y  R  E  T  T  V  Y  Q  H  P  Q  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  I  Q  N  L  C  T  I  V  S  M  F  Y  P  L  Q  S  F  G  Y  Q  S  Q  L  I  S  L  N  L  C  I  L  S  L  L  G  L  N  Y  V  G  S  E  H  D  T  D  S  P  C  T  N  T  Y  P  L  *  F  L  T  E  V  L  T  I  S  V  L  Q  L  M  S  S  L  *  N  K  I  L  I  F  H  T  M  I  S  I  *  V  *  G  L  </second_frame>
            <third_frame>   R  V  F  V  Q  K  H  F  N  S  W  N  M  G  T  T  I  T  S  L  N  F  M  R  T  C  R  T  D  R  H  R  H  D  *  P  S  Q  A  S  *  P  H  T  *  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  E  A  W  R  T  V  T  S  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  F  T  *  N  L  R  I  H  L  W  T  D  F  L  Q  N  K  E  K  L  I  *  T  L  A  Q  K  V  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  L  R  Y  I  N  T  L  N  S  N  L  L  F  V  L  K  R  H  T  M  T  Q  Y  K  I  F  V  Q  *  Y  P  C  F  I  L  C  N  H  L  A  I  N  P  N  *  S  H  *  I  Y  A  Y  Y  H  Y  *  A  *  I  M  W  D  Q  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  P  R  C  *  Q  F  R  Y  C  N  *  C  P  H  F  K  I  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0126D21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57574" stop="57311"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPAGRTVIDTTDRHKLRNPTLSQTSPSSFSSCTTLPPMDRQKHGGLSQARRTVTSSVGGLFCISSLKISAFIFGQISCKIKRNLYKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0126D21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57261" stop="57019"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRETTVYQHPQLKFVVCPQATHYDSIQNLCTIVSMFYPLQSFGYQSQLISLNLCILSLLGLNYVGSEHDTDSPCTNTYPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="72075" PGL_stop="67810"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72075" e_stop="72063"/>
            <exon e_start="71995" e_stop="71619"/>
            <exon e_start="69022" e_stop="68887"/>
            <exon e_start="68786" e_stop="68401"/>
            <exon e_start="68022" e_stop="67810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.296" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72075" e_stop="72063" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72062" i_stop="71996" i_length="67"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71995" e_stop="71619" e_length="377"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.296">
            <gDNA_intron_boundary i_start="71618" i_stop="69023" i_length="2596"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69022" e_stop="68887" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68886" i_stop="68787" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68786" e_stop="68401" e_length="386"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.931">
            <gDNA_intron_boundary i_start="68400" i_stop="68023" i_length="378"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="68022" e_stop="67810" e_length="213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72075" stop="72063"/>
              <exon start="71995" stop="71619"/>
              <exon start="69022" stop="68887"/>
              <exon start="68786" stop="68690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68894" stop="68887"/>
              <exon start="68786" stop="68401"/>
              <exon start="68022" stop="67810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTACTTCTCAG : ATCAAGGACATGGCATTGAAAGCATCAGGAGCATACAAACAGTGTGGTCCATGTTCCACTCACCCCTCCACTCTCCGAAAAAACGGAAGCCAAAACGACTCCGACTCCGATAAATTCCGTTGGTCTTATAAAAGAACAGGGAGTTCGAGTTCCAGCTCCACGGCTGGGAGGAAGGAGCTGGAAGCCAGGCTTAAAGGAATATCAAGCGGGGAAGTTACGCCCGTATCGGCGTCAGCTAGTGGCCGGCGAGCTGAACCCGTGGTGTTTGTTGAAGAAAGCGAGCCGAAAGAGTGGGTGGCTCAAGTCGAGCCGGGAGTTCTAATCACTTTCGTTTCATTACCACGTGGCGGCAATGATCTTAAACGGATCCGATTCAG : TCGAGAAATGTTTAATAAATACCAAGCTCAAAGATGGTGGTCCGAGAATTGTGAGAAGGTAATGGAGCTTTATAATGTCCAAAGGTTGAATCGTCAAGCTTTTCCCCTTCCAACGCCTCCAAGATCAGAAGACGAG : AGTTCAAAAATCGAATCGATTGAAGACAGTCCTGTGACACCCCCGCTGACTAAAGAACGACTACCACGTACTTTGTTCCGTCCAATGTATTCATCTTCAGATTCTCTTGAACTACAGTCCACCCATTCTCGCTATAACTATGACTCTTGTGGTGTCTCGTCAACTCCAAAACTCTCAAGCATCAGTGGAACAAAGACAGAGATATCATCAATGGATGCCTCTATGAGGACTAGCACATCAAGAGATGCAGATCGCTCTGGAGAGCTATCTATCAGCAATGCCAGTGATCTTGAAACAGAATGGGTCGAGCAAGATGAGCCGGGGGTTTACATCACTATACGAGCACTACCAGATGGCAGACGAGAACTCAAACGTGTCAGATTCAG : CCGAGAAAAATTTGGAGAAGTGCATGCCAGGTTATGGTGGGAGGAGAATCGTGCTAGGATACACAAACAATACCTGGGATGATCGATAACACTTGTTGCAATATCACTACATTTCCTGTTGATTGCCAATTAAGGAGGTGTTGCACTTCTTTGGCAATGCTCATAGTATTCATTATTATATGTGGAGCCAGAGATTAGTATACAAAGAAGAAT</gDNA_template>
            <first_frame> T  Y  F  S   : D  Q  G  H  G  I  E  S  I  R  S  I  Q  T  V  W  S  M  F  H  S  P  L  H  S  P  K  K  R  K  P  K  R  L  R  L  R  *  I  P  L  V  L  *  K  N  R  E  F  E  F  Q  L  H  G  W  E  E  G  A  G  S  Q  A  *  R  N  I  K  R  G  S  Y  A  R  I  G  V  S  *  W  P  A  S  *  T  R  G  V  C  *  R  K  R  A  E  R  V  G  G  S  S  R  A  G  S  S  N  H  F  R  F  I  T  T  W  R  Q  *  S  *  T  D  P  I  Q  :  S  R  N  V  *  *  I  P  S  S  K  M  V  V  R  E  L  *  E  G  N  G  A  L  *  C  P  K  V  E  S  S  S  F  S  P  S  N  A  S  K  I  R  R  R   : E  F  K  N  R  I  D  *  R  Q  S  C  D  T  P  A  D  *  R  T  T  T  T  Y  F  V  P  S  N  V  F  I  F  R  F  S  *  T  T  V  H  P  F  S  L  *  L  *  L  L  W  C  L  V  N  S  K  T  L  K  H  Q  W  N  K  D  R  D  I  I  N  G  C  L  Y  E  D  *  H  I  K  R  C  R  S  L  W  R  A  I  Y  Q  Q  C  Q  *  S  *  N  R  M  G  R  A  R  *  A  G  G  L  H  H  Y  T  S  T  T  R  W  Q  T  R  T  Q  T  C  Q  I  Q  :  P  R  K  I  W  R  S  A  C  Q  V  M  V  G  G  E  S  C  *  D  T  Q  T  I  P  G  M  I  D  N  T  C  C  N  I  T  T  F  P  V  D  C  Q  L  R  R  C  C  T  S  L  A  M  L  I  V  F  I  I  I  C  G  A  R  D  *  Y  T  K  K  N </first_frame>
            <second_frame>  L  T  S  Q  :  I  K  D  M  A  L  K  A  S  G  A  Y  K  Q  C  G  P  C  S  T  H  P  S  T  L  R  K  N  G  S  Q  N  D  S  D  S  D  K  F  R  W  S  Y  K  R  T  G  S  S  S  S  S  S  T  A  G  R  K  E  L  E  A  R  L  K  G  I  S  S  G  E  V  T  P  V  S  A  S  A  S  G  R  R  A  E  P  V  V  F  V  E  E  S  E  P  K  E  W  V  A  Q  V  E  P  G  V  L  I  T  F  V  S  L  P  R  G  G  N  D  L  K  R  I  R  F  S :   R  E  M  F  N  K  Y  Q  A  Q  R  W  W  S  E  N  C  E  K  V  M  E  L  Y  N  V  Q  R  L  N  R  Q  A  F  P  L  P  T  P  P  R  S  E  D  E  :  S  S  K  I  E  S  I  E  D  S  P  V  T  P  P  L  T  K  E  R  L  P  R  T  L  F  R  P  M  Y  S  S  S  D  S  L  E  L  Q  S  T  H  S  R  Y  N  Y  D  S  C  G  V  S  S  T  P  K  L  S  S  I  S  G  T  K  T  E  I  S  S  M  D  A  S  M  R  T  S  T  S  R  D  A  D  R  S  G  E  L  S  I  S  N  A  S  D  L  E  T  E  W  V  E  Q  D  E  P  G  V  Y  I  T  I  R  A  L  P  D  G  R  R  E  L  K  R  V  R  F  S :   R  E  K  F  G  E  V  H  A  R  L  W  W  E  E  N  R  A  R  I  H  K  Q  Y  L  G  *  S  I  T  L  V  A  I  S  L  H  F  L  L  I  A  N  *  G  G  V  A  L  L  W  Q  C  S  *  Y  S  L  L  Y  V  E  P  E  I  S  I  Q  R  R   </second_frame>
            <third_frame>   L  L  L  R :   S  R  T  W  H  *  K  H  Q  E  H  T  N  S  V  V  H  V  P  L  T  P  P  L  S  E  K  T  E  A  K  T  T  P  T  P  I  N  S  V  G  L  I  K  E  Q  G  V  R  V  P  A  P  R  L  G  G  R  S  W  K  P  G  L  K  E  Y  Q  A  G  K  L  R  P  Y  R  R  Q  L  V  A  G  E  L  N  P  W  C  L  L  K  K  A  S  R  K  S  G  W  L  K  S  S  R  E  F  *  S  L  S  F  H  Y  H  V  A  A  M  I  L  N  G  S  D  S   : V  E  K  C  L  I  N  T  K  L  K  D  G  G  P  R  I  V  R  R  *  W  S  F  I  M  S  K  G  *  I  V  K  L  F  P  F  Q  R  L  Q  D  Q  K  T  R :   V  Q  K  S  N  R  L  K  T  V  L  *  H  P  R  *  L  K  N  D  Y  H  V  L  C  S  V  Q  C  I  H  L  Q  I  L  L  N  Y  S  P  P  I  L  A  I  T  M  T  L  V  V  S  R  Q  L  Q  N  S  Q  A  S  V  E  Q  R  Q  R  Y  H  Q  W  M  P  L  *  G  L  A  H  Q  E  M  Q  I  A  L  E  S  Y  L  S  A  M  P  V  I  L  K  Q  N  G  S  S  K  M  S  R  G  F  T  S  L  Y  E  H  Y  Q  M  A  D  E  N  S  N  V  S  D  S   : A  E  K  N  L  E  K  C  M  P  G  Y  G  G  R  R  I  V  L  G  Y  T  N  N  T  W  D  D  R  *  H  L  L  Q  Y  H  Y  I  S  C  *  L  P  I  K  E  V  L  H  F  F  G  N  A  H  S  I  H  Y  Y  M  W  S  Q  R  L  V  Y  K  E  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0126D21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72074" stop="72063"/>
                    <exon start="71995" stop="71619"/>
                    <exon start="69022" stop="68887"/>
                    <exon start="68786" stop="68401"/>
                    <exon start="68022" stop="67941"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTSQIKDMALKASGAYKQCGPCSTHPSTLRKNGSQNDSDSDKFRWSYKRTGSSSSSSTAGRKELEARLKGISSGEVTPVSASASGRRAEPVVFVEESEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKYQAQRWWSENCEKVMELYNVQRLNRQAFPLPTPPRSEDESSKIESIEDSPVTPPLTKERLPRTLFRPMYSSSDSLELQSTHSRYNYDSCGVSSTPKLSSISGTKTEISSMDASMRTSTSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPDGRRELKRVRFSREKFGEVHARLWWEENRARIHKQYLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71976" e_stop="71468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71976" e_stop="71468" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71976" stop="71468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329092" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCATCAGGAGCATACAAACAGTGTGGTCCATGTTCCACTCACCCCTCCACTCTCCGAAAAAACGGAAGCCAAAACGACTCCGACTCCGATAAATTCCGTTGGTCTTATAAAAGAACAGGGAGTTCGAGTTCCAGCTCCACGGCTGGGAGGAAGGAGCTGGAAGCCAGGCTTAAAGGAATATCAAGCGGGGAAGTTACGCCCGTATCGGCGTCAGCTAGTGGCCGGCGAGCTGAACCCGTGGTGTTTGTTGAAGAAAGCGAGCCGAAAGAGTGGGTGGCTCAAGTCGAGCCGGGAGTTCTAATCACTTTCGTTTCATTACCACGTGGCGGCAATGATCTTAAACGGATCCGATTCAGGTATTCTTTTTCCCATTATAAAATTGGTAGTATTAATTATTGGTTTATTGTTCATTTTTGTTTTGAGTGGCGAACCATTACTTGTGAACTAATTTTCTCTTTCATGGACCAAACAACTTTATATTATAGCCGTCTATATATCTTATAGGTT</gDNA_template>
            <first_frame> K  H  Q  E  H  T  N  S  V  V  H  V  P  L  T  P  P  L  S  E  K  T  E  A  K  T  T  P  T  P  I  N  S  V  G  L  I  K  E  Q  G  V  R  V  P  A  P  R  L  G  G  R  S  W  K  P  G  L  K  E  Y  Q  A  G  K  L  R  P  Y  R  R  Q  L  V  A  G  E  L  N  P  W  C  L  L  K  K  A  S  R  K  S  G  W  L  K  S  S  R  E  F  *  S  L  S  F  H  Y  H  V  A  A  M  I  L  N  G  S  D  S  G  I  L  F  P  I  I  K  L  V  V  L  I  I  G  L  L  F  I  F  V  L  S  G  E  P  L  L  V  N  *  F  S  L  S  W  T  K  Q  L  Y  I  I  A  V  Y  I  S  Y  R   </first_frame>
            <second_frame>  S  I  R  S  I  Q  T  V  W  S  M  F  H  S  P  L  H  S  P  K  K  R  K  P  K  R  L  R  L  R  *  I  P  L  V  L  *  K  N  R  E  F  E  F  Q  L  H  G  W  E  E  G  A  G  S  Q  A  *  R  N  I  K  R  G  S  Y  A  R  I  G  V  S  *  W  P  A  S  *  T  R  G  V  C  *  R  K  R  A  E  R  V  G  G  S  S  R  A  G  S  S  N  H  F  R  F  I  T  T  W  R  Q  *  S  *  T  D  P  I  Q  V  F  F  F  P  L  *  N  W  *  Y  *  L  L  V  Y  C  S  F  L  F  *  V  A  N  H  Y  L  *  T  N  F  L  F  H  G  P  N  N  F  I  L  *  P  S  I  Y  L  I  G  </second_frame>
            <third_frame>   A  S  G  A  Y  K  Q  C  G  P  C  S  T  H  P  S  T  L  R  K  N  G  S  Q  N  D  S  D  S  D  K  F  R  W  S  Y  K  R  T  G  S  S  S  S  S  S  T  A  G  R  K  E  L  E  A  R  L  K  G  I  S  S  G  E  V  T  P  V  S  A  S  A  S  G  R  R  A  E  P  V  V  F  V  E  E  S  E  P  K  E  W  V  A  Q  V  E  P  G  V  L  I  T  F  V  S  L  P  R  G  G  N  D  L  K  R  I  R  F  R  Y  S  F  S  H  Y  K  I  G  S  I  N  Y  W  F  I  V  H  F  C  F  E  W  R  T  I  T  C  E  L  I  F  S  F  M  D  Q  T  T  L  Y  Y  S  R  L  Y  I  L  *  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0126D21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71974" stop="71471"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASGAYKQCGPCSTHPSTLRKNGSQNDSDSDKFRWSYKRTGSSSSSSTAGRKELEARLKGISSGEVTPVSASASGRRAEPVVFVEESEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFRYSFSHYKIGSINYWFIVHFCFEWRTITCELIFSFMDQTTLYYSRLYIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="82836" PGL_stop="82293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82836" e_stop="82293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82836" e_stop="82293" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82836" stop="82293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAGTCCCAAATAGAAAGAGCAACAACAAGGAAGAAGAAATTGTAAGCCTTCGACGTGCAATATTGATTGAGAAATGGATGGAAAGTTACAAATATAGTCAAAGTTCAGGACACTTCAGTTCAGATTCATCTTCATCAGCAGAGTCAAGCATGTTTTCATCTTCAGAAACAGAGTCAAGATCCATCAATACATTGCCAAAAACAACAACACAAGTCCGAAGACCAGACAGGGTTGTTACATTCTCTACAGAGACTAAAACTCCAAAATGTGAAGGAGGAGGAAGGTTCATGAGGACAAAATCAAGAGCCTTGAAGATGGTGAAACAACCTATTTCACCAGGTGGGAAAATAGCAAACTTTCTAAATTCGATATTCAATTCGAAAAACATCAAGAAAAACCATCAAGAGGACTGGAGTTCAGTCAGGAAATCAAGATCAGTGAATGATTCAACTACTATGACAACATCATCTTGCTTAAACAAAACCCCTTCCTCGACTTCGATAAGTAATAAATCGAAAAGATCAGTGAGATTTTGCCCTGT</gDNA_template>
            <first_frame> N  K  S  Q  I  E  R  A  T  T  R  K  K  K  L  *  A  F  D  V  Q  Y  *  L  R  N  G  W  K  V  T  N  I  V  K  V  Q  D  T  S  V  Q  I  H  L  H  Q  Q  S  Q  A  C  F  H  L  Q  K  Q  S  Q  D  P  S  I  H  C  Q  K  Q  Q  H  K  S  E  D  Q  T  G  L  L  H  S  L  Q  R  L  K  L  Q  N  V  K  E  E  E  G  S  *  G  Q  N  Q  E  P  *  R  W  *  N  N  L  F  H  Q  V  G  K  *  Q  T  F  *  I  R  Y  S  I  R  K  T  S  R  K  T  I  K  R  T  G  V  Q  S  G  N  Q  D  Q  *  M  I  Q  L  L  *  Q  H  H  L  A  *  T  K  P  L  P  R  L  R  *  V  I  N  R  K  D  Q  *  D  F  A  L  </first_frame>
            <second_frame>  T  S  P  K  *  K  E  Q  Q  Q  G  R  R  N  C  K  P  S  T  C  N  I  D  *  E  M  D  G  K  L  Q  I  *  S  K  F  R  T  L  Q  F  R  F  I  F  I  S  R  V  K  H  V  F  I  F  R  N  R  V  K  I  H  Q  Y  I  A  K  N  N  N  T  S  P  K  T  R  Q  G  C  Y  I  L  Y  R  D  *  N  S  K  M  *  R  R  R  K  V  H  E  D  K  I  K  S  L  E  D  G  E  T  T  Y  F  T  R  W  E  N  S  K  L  S  K  F  D  I  Q  F  E  K  H  Q  E  K  P  S  R  G  L  E  F  S  Q  E  I  K  I  S  E  *  F  N  Y  Y  D  N  I  I  L  L  K  Q  N  P  F  L  D  F  D  K  *  *  I  E  K  I  S  E  I  L  P  C </second_frame>
            <third_frame>   Q  V  P  N  R  K  S  N  N  K  E  E  E  I  V  S  L  R  R  A  I  L  I  E  K  W  M  E  S  Y  K  Y  S  Q  S  S  G  H  F  S  S  D  S  S  S  S  A  E  S  S  M  F  S  S  S  E  T  E  S  R  S  I  N  T  L  P  K  T  T  T  Q  V  R  R  P  D  R  V  V  T  F  S  T  E  T  K  T  P  K  C  E  G  G  G  R  F  M  R  T  K  S  R  A  L  K  M  V  K  Q  P  I  S  P  G  G  K  I  A  N  F  L  N  S  I  F  N  S  K  N  I  K  K  N  H  Q  E  D  W  S  S  V  R  K  S  R  S  V  N  D  S  T  T  M  T  T  S  S  C  L  N  K  T  P  S  S  T  S  I  S  N  K  S  K  R  S  V  R  F  C  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0126D21.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82834" stop="82295"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVPNRKSNNKEEEIVSLRRAILIEKWMESYKYSQSSGHFSSDSSSSAESSMFSSSETESRSINTLPKTTTQVRRPDRVVTFSTETKTPKCEGGGRFMRTKSRALKMVKQPISPGGKIANFLNSIFNSKNIKKNHQEDWSSVRKSRSVNDSTTMTTSSCLNKTPSSTSISNKSKRSVRFCP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="96703" PGL_stop="91762"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96703" e_stop="96493"/>
            <exon e_start="95542" e_stop="95426"/>
            <exon e_start="91938" e_stop="91762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.921" e_score="0.910"/>
          <exon-intron don_prob="0.999" acc_prob="0.939" e_score="0.949"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="96703" e_stop="96493" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.921">
            <gDNA_intron_boundary i_start="96492" i_stop="95543" i_length="950"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="95542" e_stop="95426" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.939">
            <gDNA_intron_boundary i_start="95425" i_stop="91939" i_length="3487"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="91938" e_stop="91762" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96703" stop="96493"/>
              <exon start="95542" stop="95426"/>
              <exon start="91938" stop="91762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577116" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGATTATGCCACCGGAATCTCCTTCCCACTTCAAACCCCTCTCTCACTTCCACATTTATCTCTAGTTTTGTTATTGGTCGCACCTCCTCCCACAATTATAACAGAAACTTCCCCAAATTTTTGGTTTCTGCAACTATGGAATCTTCCTTCAAGCCTGAGGAAGCTAGGGTTCCTGTAGAGCTTCCTTTGCCTGCTCCTCCCGTCACCAAG : TTCAAGATTGCTCTTTGCCAGTTATCTGTAACTACCGACAAGGAGAGAAATATTGTTCATGCTCAGAGGGCAATAGAAGATGCTGCAGACAAGGGTGCTCAACTTATTCTTCTCCCT : GAAATATGGAATAGTCCATATTCCAATGATAGTTTTCCAGTATATGCAGAGGACATTGATGCTGGCGGAGATGCATCTCCTTCAACTAGAATGTTATCTGAAGTTTCTCGGAGTCGAAAGATTACAATTATTGGTGGCTCTATACCTGAACGCAGCGGTGACAAATTATATAACAGT</gDNA_template>
            <first_frame> K  I  M  P  P  E  S  P  S  H  F  K  P  L  S  H  F  H  I  Y  L  *  F  C  Y  W  S  H  L  L  P  Q  L  *  Q  K  L  P  Q  I  F  G  F  C  N  Y  G  I  F  L  Q  A  *  G  S  *  G  S  C  R  A  S  F  A  C  S  S  R  H  Q   : V  Q  D  C  S  L  P  V  I  C  N  Y  R  Q  G  E  K  Y  C  S  C  S  E  G  N  R  R  C  C  R  Q  G  C  S  T  Y  S  S  P   : *  N  M  E  *  S  I  F  Q  *  *  F  S  S  I  C  R  G  H  *  C  W  R  R  C  I  S  F  N  *  N  V  I  *  S  F  S  E  S  K  D  Y  N  Y  W  W  L  Y  T  *  T  Q  R  *  Q  I  I  *  Q  </first_frame>
            <second_frame>  R  L  C  H  R  N  L  L  P  T  S  N  P  S  L  T  S  T  F  I  S  S  F  V  I  G  R  T  S  S  H  N  Y  N  R  N  F  P  K  F  L  V  S  A  T  M  E  S  S  F  K  P  E  E  A  R  V  P  V  E  L  P  L  P  A  P  P  V  T  K  :  F  K  I  A  L  C  Q  L  S  V  T  T  D  K  E  R  N  I  V  H  A  Q  R  A  I  E  D  A  A  D  K  G  A  Q  L  I  L  L  P  :  E  I  W  N  S  P  Y  S  N  D  S  F  P  V  Y  A  E  D  I  D  A  G  G  D  A  S  P  S  T  R  M  L  S  E  V  S  R  S  R  K  I  T  I  I  G  G  S  I  P  E  R  S  G  D  K  L  Y  N  S </second_frame>
            <third_frame>   D  Y  A  T  G  I  S  F  P  L  Q  T  P  L  S  L  P  H  L  S  L  V  L  L  L  V  A  P  P  P  T  I  I  T  E  T  S  P  N  F  W  F  L  Q  L  W  N  L  P  S  S  L  R  K  L  G  F  L  *  S  F  L  C  L  L  L  P  S  P  S :   S  R  L  L  F  A  S  Y  L  *  L  P  T  R  R  E  I  L  F  M  L  R  G  Q  *  K  M  L  Q  T  R  V  L  N  L  F  F  S  L :   K  Y  G  I  V  H  I  P  M  I  V  F  Q  Y  M  Q  R  T  L  M  L  A  E  M  H  L  L  Q  L  E  C  Y  L  K  F  L  G  V  E  R  L  Q  L  L  V  A  L  Y  L  N  A  A  V  T  N  Y  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0126D21.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96702" stop="96493"/>
                    <exon start="95542" stop="95426"/>
                    <exon start="91938" stop="91762"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLCHRNLLPTSNPSLTSTFISSFVIGRTSSHNYNRNFPKFLVSATMESSFKPEEARVPVELPLPAPPVTKFKIALCQLSVTTDKERNIVHAQRAIEDAADKGAQLILLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTRMLSEVSRSRKITIIGGSIPERSGDKLYNS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="112614" PGL_stop="112382"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112614" e_stop="112382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="112614" e_stop="112382" e_length="233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112614" stop="112382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573431" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTAAATATCAAAAAGAATATTCTCATTTTCTTTGTTGTTTATTTGCTTATTATGATGGTAGATTATCTATTACTTCTGATATGGGACGTAGTCCTAATGGTAACGATTATTTTTTACACTTACTGTCCATTGGATTGACCGTGAATGGAACATGCAAAAACGAATATTAGCGTATAAATATGTTGAAGAAACTAAAATCGGTTCTTATATAGCATTAAAAGTAGGCTCTA</gDNA_template>
            <first_frame> F  L  N  I  K  K  N  I  L  I  F  F  V  V  Y  L  L  I  M  M  V  D  Y  L  L  L  L  I  W  D  V  V  L  M  V  T  I  I  F  Y  T  Y  C  P  L  D  *  P  *  M  E  H  A  K  T  N  I  S  V  *  I  C  *  R  N  *  N  R  F  L  Y  S  I  K  S  R  L   </first_frame>
            <second_frame>  F  *  I  S  K  R  I  F  S  F  S  L  L  F  I  C  L  L  *  W  *  I  I  Y  Y  F  *  Y  G  T  *  S  *  W  *  R  L  F  F  T  L  T  V  H  W  I  D  R  E  W  N  M  Q  K  R  I  L  A  Y  K  Y  V  E  E  T  K  I  G  S  Y  I  A  L  K  V  G  S  </second_frame>
            <third_frame>   F  K  Y  Q  K  E  Y  S  H  F  L  C  C  L  F  A  Y  Y  D  G  R  L  S  I  T  S  D  M  G  R  S  P  N  G  N  D  Y  F  L  H  L  L  S  I  G  L  T  V  N  G  T  C  K  N  E  Y  *  R  I  N  M  L  K  K  L  K  S  V  L  I  *  H  *  K  *  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0126D21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="135598" PGL_stop="134637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135598" e_stop="134637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135598" e_stop="134637" e_length="962"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135598" stop="135035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135565" stop="135075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135547" stop="135074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135547" stop="135082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135536" stop="135156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135528" stop="134895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135451" stop="135038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134926" stop="134637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTGAACCATGACAGATCTCAAAAGCCACACCACCGCCGCTGCTATAGCTGAAAAGGTGGAGAATGTGAAGGGCCATCGGATTTGGGATTGGAATCCTGATGGTTGTGAGATTGGAATATGTGGTCCTCATTGAAAGGCATTCGAAAAGAGATTCAGATTCAAAAGACATCCAAACAGAATTCCAGGAGAAAAACTATCCTTGTATTTTGAATTTGAATCCAACTCCGAAGTTGGATTCTTGTTTGCTGCTCTCGCGAAGGTAAACTGCCTCGCTTTAATATATATTTTTCCTCAAACTCCAGTTAGTCGATTTTGCTGATTTTTGATCATTTCAATTTGATATGATGTTTAGATTTTGTCTTTAAGTTAGTAAAGTTGAGCTTTCTGTTTAGCAATGATACACATATCTCTCATATTATCTTTGTATTTTTGAATATATATTAAGGTGTGTGTATGAATGACTGAGAATGTTAAGTTTTCTCGACTGCAATATAACCTAATCTAGTTCTGAAAAGTCATAGCTTACTTTCTAATTTTGAACGTTTCATTCCCTCTATTTGTTGGTTCAAGGACTGCTGTTTGACATTTTAACTTTGAAATCTTATCCTCTAAGTTGTCCCGAAGTCTTGGTCACCTGGTTTAACATTCTCGTTCATTTATACTTTTCTGTCACCATGATCTCCTATCCTAAAACATGTTTTCTCGAAGCATTTGGACTATCAATTTGGCCATTTGTGTTTTCAAAATTTTGTGAGTTTTGATTTGACTGGTCTAAAATGCATACACTCTTTCGTGTCCTGCTTCTTTTCCTTTCTAATGCTTCTCTCGATTTCTAGTGGTGGTGCAACTCATGATAACTCTTATAGAATTGCATTTTCAGTTTATCTTTTCATGTCTCTATATAACATTGCAACTTTGAAAAAATATTCAGAAGCATGTCCCTGGTTACATTCTATCTA</gDNA_template>
            <first_frame> L  L  N  H  D  R  S  Q  K  P  H  H  R  R  C  Y  S  *  K  G  G  E  C  E  G  P  S  D  L  G  L  E  S  *  W  L  *  D  W  N  M  W  S  S  L  K  G  I  R  K  E  I  Q  I  Q  K  T  S  K  Q  N  S  R  R  K  T  I  L  V  F  *  I  *  I  Q  L  R  S  W  I  L  V  C  C  S  R  E  G  K  L  P  R  F  N  I  Y  F  S  S  N  S  S  *  S  I  L  L  I  F  D  H  F  N  L  I  *  C  L  D  F  V  F  K  L  V  K  L  S  F  L  F  S  N  D  T  H  I  S  H  I  I  F  V  F  L  N  I  Y  *  G  V  C  M  N  D  *  E  C  *  V  F  S  T  A  I  *  P  N  L  V  L  K  S  H  S  L  L  S  N  F  E  R  F  I  P  S  I  C  W  F  K  D  C  C  L  T  F  *  L  *  N  L  I  L  *  V  V  P  K  S  W  S  P  G  L  T  F  S  F  I  Y  T  F  L  S  P  *  S  P  I  L  K  H  V  F  S  K  H  L  D  Y  Q  F  G  H  L  C  F  Q  N  F  V  S  F  D  L  T  G  L  K  C  I  H  S  F  V  S  C  F  F  S  F  L  M  L  L  S  I  S  S  G  G  A  T  H  D  N  S  Y  R  I  A  F  S  V  Y  L  F  M  S  L  Y  N  I  A  T  L  K  K  Y  S  E  A  C  P  W  L  H  S  I   </first_frame>
            <second_frame>  F  *  T  M  T  D  L  K  S  H  T  T  A  A  A  I  A  E  K  V  E  N  V  K  G  H  R  I  W  D  W  N  P  D  G  C  E  I  G  I  C  G  P  H  *  K  A  F  E  K  R  F  R  F  K  R  H  P  N  R  I  P  G  E  K  L  S  L  Y  F  E  F  E  S  N  S  E  V  G  F  L  F  A  A  L  A  K  V  N  C  L  A  L  I  Y  I  F  P  Q  T  P  V  S  R  F  C  *  F  L  I  I  S  I  *  Y  D  V  *  I  L  S  L  S  *  *  S  *  A  F  C  L  A  M  I  H  I  S  L  I  L  S  L  Y  F  *  I  Y  I  K  V  C  V  *  M  T  E  N  V  K  F  S  R  L  Q  Y  N  L  I  *  F  *  K  V  I  A  Y  F  L  I  L  N  V  S  F  P  L  F  V  G  S  R  T  A  V  *  H  F  N  F  E  I  L  S  S  K  L  S  R  S  L  G  H  L  V  *  H  S  R  S  F  I  L  F  C  H  H  D  L  L  S  *  N  M  F  S  R  S  I  W  T  I  N  L  A  I  C  V  F  K  I  L  *  V  L  I  *  L  V  *  N  A  Y  T  L  S  C  P  A  S  F  P  F  *  C  F  S  R  F  L  V  V  V  Q  L  M  I  T  L  I  E  L  H  F  Q  F  I  F  S  C  L  Y  I  T  L  Q  L  *  K  N  I  Q  K  H  V  P  G  Y  I  L  S  </second_frame>
            <third_frame>   F  E  P  *  Q  I  S  K  A  T  P  P  P  L  L  *  L  K  R  W  R  M  *  R  A  I  G  F  G  I  G  I  L  M  V  V  R  L  E  Y  V  V  L  I  E  R  H  S  K  R  D  S  D  S  K  D  I  Q  T  E  F  Q  E  K  N  Y  P  C  I  L  N  L  N  P  T  P  K  L  D  S  C  L  L  L  S  R  R  *  T  A  S  L  *  Y  I  F  F  L  K  L  Q  L  V  D  F  A  D  F  *  S  F  Q  F  D  M  M  F  R  F  C  L  *  V  S  K  V  E  L  S  V  *  Q  *  Y  T  Y  L  S  Y  Y  L  C  I  F  E  Y  I  L  R  C  V  Y  E  *  L  R  M  L  S  F  L  D  C  N  I  T  *  S  S  S  E  K  S  *  L  T  F  *  F  *  T  F  H  S  L  Y  L  L  V  Q  G  L  L  F  D  I  L  T  L  K  S  Y  P  L  S  C  P  E  V  L  V  T  W  F  N  I  L  V  H  L  Y  F  S  V  T  M  I  S  Y  P  K  T  C  F  L  E  A  F  G  L  S  I  W  P  F  V  F  S  K  F  C  E  F  *  F  D  W  S  K  M  H  T  L  F  R  V  L  L  L  F  L  S  N  A  S  L  D  F  *  W  W  C  N  S  *  *  L  L  *  N  C  I  F  S  L  S  F  H  V  S  I  *  H  C  N  F  E  K  I  F  R  S  M  S  L  V  T  F  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0126D21.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134917" stop="134639"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPILKHVFSKHLDYQFGHLCFQNFVSFDLTGLKCIHSFVSCFFSFLMLLSISSGGATHDNSYRIAFSVYLFMSLYNIATLKKYSEACPWLHSI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0126D21.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135056" stop="134835"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFHSLYLLVQGLLFDILTLKSYPLSCPEVLVTWFNILVHLYFSVTMISYPKTCFLEAFGLSIWPFVFSKFCEF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0126D21.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135527" stop="135333"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAIGFGIGILMVVRLEYVVLIERHSKRDSDSKDIQTEFQEKNYPCILNLNPTPKLDSCLLLSRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="135075" PGL_stop="135565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135075" e_stop="135565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="135075" e_stop="135565" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135075" stop="135565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATGACTTTTCAGAACTAGATTAGGTTATATTGCAGTCGAGAAAACTTAACATTCTCAGTCATTCATACACACACCTTAATATATATTCAAAAATACAAAGATAATATGAGAGATATGTGTATCATTGCTAAACAGAAAGCTCAACTTTACTAACTTAAAGACAAAATCTAAACATCATATCAAATTGAAATGATCAAAAATCAGCAAAATCGACTAACTGGAGTTTGAGGAAAAATATATATTAAAGCGAGGCAGTTTACCTTCGCGAGAGCAGCAAACAAGAATCCAACTTCGGAGTTGGATTCAAATTCAAAATACAAGGATAGTTTTTCTCCTGGAATTCTGTTTGGATGTCTTTTGAATCTGAATCTCTTTTCGAATGCCTTTCAATGAGGACCACATATTCCAATCTCACAACCATCAGGATTCCAATCCCAAATCCGATGGCCCTTCACATTCTCCACCTTTTCAGCTATAGCAGCGGCGGTG</gDNA_template>
            <first_frame> L  *  L  F  R  T  R  L  G  Y  I  A  V  E  K  T  *  H  S  Q  S  F  I  H  T  P  *  Y  I  F  K  N  T  K  I  I  *  E  I  C  V  S  L  L  N  R  K  L  N  F  T  N  L  K  T  K  S  K  H  H  I  K  L  K  *  S  K  I  S  K  I  D  *  L  E  F  E  E  K  Y  I  L  K  R  G  S  L  P  S  R  E  Q  Q  T  R  I  Q  L  R  S  W  I  Q  I  Q  N  T  R  I  V  F  L  L  E  F  C  L  D  V  F  *  I  *  I  S  F  R  M  P  F  N  E  D  H  I  F  Q  S  H  N  H  Q  D  S  N  P  K  S  D  G  P  S  H  S  P  P  F  Q  L  *  Q  R  R   </first_frame>
            <second_frame>  Y  D  F  S  E  L  D  *  V  I  L  Q  S  R  K  L  N  I  L  S  H  S  Y  T  H  L  N  I  Y  S  K  I  Q  R  *  Y  E  R  Y  V  Y  H  C  *  T  E  S  S  T  L  L  T  *  R  Q  N  L  N  I  I  S  N  *  N  D  Q  K  S  A  K  S  T  N  W  S  L  R  K  N  I  Y  *  S  E  A  V  Y  L  R  E  S  S  K  Q  E  S  N  F  G  V  G  F  K  F  K  I  Q  G  *  F  F  S  W  N  S  V  W  M  S  F  E  S  E  S  L  F  E  C  L  S  M  R  T  T  Y  S  N  L  T  T  I  R  I  P  I  P  N  P  M  A  L  H  I  L  H  L  F  S  Y  S  S  G  G  </second_frame>
            <third_frame>   M  T  F  Q  N  *  I  R  L  Y  C  S  R  E  N  L  T  F  S  V  I  H  T  H  T  L  I  Y  I  Q  K  Y  K  D  N  M  R  D  M  C  I  I  A  K  Q  K  A  Q  L  Y  *  L  K  D  K  I  *  T  S  Y  Q  I  E  M  I  K  N  Q  Q  N  R  L  T  G  V  *  G  K  I  Y  I  K  A  R  Q  F  T  F  A  R  A  A  N  K  N  P  T  S  E  L  D  S  N  S  K  Y  K  D  S  F  S  P  G  I  L  F  G  C  L  L  N  L  N  L  F  S  N  A  F  Q  *  G  P  H  I  P  I  S  Q  P  S  G  F  Q  S  Q  I  R  W  P  F  T  F  S  T  F  S  A  I  A  A  A  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0126D21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="141503" PGL_stop="142042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141503" e_stop="142042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="141503" e_stop="142042" e_length="540"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141503" stop="142042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214722" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTCAAAGCTGCAAGAATGTATAGAATGGATTCAGAAACAATCAACACATCAGTAAATGGAGAGATGGACTATTCAGATTTAAGAGCAAAGTTACTTCAAAATAAGGACAAACCAGCTATTATAAATGTCACAATTGGTATATACGTATACTCCAACCTCTTATCATTTTTCATTTTTTCTTTTATGTGATCAAACCAGTCATCTTAAGTCTTTTCCATTGATGGTTCTTTTAACTATAGGAACTATGTTCAAAGGAGCTATTGATGATGTTGATGTTATTCTTGAAACACTCAAAGAATGTGGCTATTCACAAGATCGATTTTACATCCACTGTGATGCAGCACTATGTGGTCTTATGACCCCTTTTGTAAACAATGTGAGTTTCAATTGCTTCTTACTTCTAATTACAATATCTTTAGTAATTCTCAAAGCGACGATCTAATTATTCTTTTTAATTTTGAACAGATGATTAGTTTCAACAATCCAATTGGAAGTGTCACAATTTCTAGTCACAAGCTCTTAGGATGCCCAATGCCTT</gDNA_template>
            <first_frame> Y  S  K  L  Q  E  C  I  E  W  I  Q  K  Q  S  T  H  Q  *  M  E  R  W  T  I  Q  I  *  E  Q  S  Y  F  K  I  R  T  N  Q  L  L  *  M  S  Q  L  V  Y  T  Y  T  P  T  S  Y  H  F  S  F  F  L  L  C  D  Q  T  S  H  L  K  S  F  P  L  M  V  L  L  T  I  G  T  M  F  K  G  A  I  D  D  V  D  V  I  L  E  T  L  K  E  C  G  Y  S  Q  D  R  F  Y  I  H  C  D  A  A  L  C  G  L  M  T  P  F  V  N  N  V  S  F  N  C  F  L  L  L  I  T  I  S  L  V  I  L  K  A  T  I  *  L  F  F  L  I  L  N  R  *  L  V  S  T  I  Q  L  E  V  S  Q  F  L  V  T  S  S  *  D  A  Q  C  L </first_frame>
            <second_frame>  I  Q  S  C  K  N  V  *  N  G  F  R  N  N  Q  H  I  S  K  W  R  D  G  L  F  R  F  K  S  K  V  T  S  K  *  G  Q  T  S  Y  Y  K  C  H  N  W  Y  I  R  I  L  Q  P  L  I  I  F  H  F  F  F  Y  V  I  K  P  V  I  L  S  L  F  H  *  W  F  F  *  L  *  E  L  C  S  K  E  L  L  M  M  L  M  L  F  L  K  H  S  K  N  V  A  I  H  K  I  D  F  T  S  T  V  M  Q  H  Y  V  V  L  *  P  L  L  *  T  M  *  V  S  I  A  S  Y  F  *  L  Q  Y  L  *  *  F  S  K  R  R  S  N  Y  S  F  *  F  *  T  D  D  *  F  Q  Q  S  N  W  K  C  H  N  F  *  S  Q  A  L  R  M  P  N  A   </second_frame>
            <third_frame>   F  K  A  A  R  M  Y  R  M  D  S  E  T  I  N  T  S  V  N  G  E  M  D  Y  S  D  L  R  A  K  L  L  Q  N  K  D  K  P  A  I  I  N  V  T  I  G  I  Y  V  Y  S  N  L  L  S  F  F  I  F  S  F  M  *  S  N  Q  S  S  *  V  F  S  I  D  G  S  F  N  Y  R  N  Y  V  Q  R  S  Y  *  *  C  *  C  Y  S  *  N  T  Q  R  M  W  L  F  T  R  S  I  L  H  P  L  *  C  S  T  M  W  S  Y  D  P  F  C  K  Q  C  E  F  Q  L  L  L  T  S  N  Y  N  I  F  S  N  S  Q  S  D  D  L  I  I  L  F  N  F  E  Q  M  I  S  F  N  N  P  I  G  S  V  T  I  S  S  H  K  L  L  G  C  P  M  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0126D21.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141629" stop="141946"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSQLVYTYTPTSYHFSFFLLCDQTSHLKSFPLMVLLTIGTMFKGAIDDVDVILETLKECGYSQDRFYIHCDAALCGLMTPFVNNVSFNCFLLLITISLVILKATI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 176 chains have been computed
$ 
$ memory statistics:
$ 41008 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 2050 bytes was the average size of a spliced alignment
$ 17568 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1597 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 204 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-07 02:39:51
-->
