<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 18:26:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E305052" ref_strand="+" ref_description="SGN-E305052 	[cLEX-10-D8]">
      <seq>ttttcctttgttcttgtgttgtatcttatatttgtaaagaagattaactgaaagatgacagtgataagaacaaacagttttaaaggaacagagtcagaaactatcacgaagccgaagaagaattcgataaatgtaacaaattgcgagcctttaaaacttatgctacacacaacattgtcattcaaaaatctggttcaagttcaagattctgttgtggcccttcctgaacctgctctcatgttttcaccccgacctgtttgtgaactcgatgctgcagctgttaagcttcaaaaagtatacaagagttacaggactagaagaaatctagctgattgtgctgttgttgtagaagaattatggtggaaggcattagattttgcagctttgaagagaagttctgtttcatttttcaacgttgaaaagcccgaaactgctgtttctcgatgggctagagcacgtacaagagctgctaaggttggaaaaggattgtccaaagatgaaaaagctcaaaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="10474" stop="11695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10774" g_stop="11132" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11133" i_stop="11238" i_length="106">
            <donor d_prob="0.342" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11239" g_stop="11395" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="516" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E305052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10774" e_stop="11132"/>
          <exon e_start="11239" e_stop="11395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTTTGTTCTTGTGTTGTATCTTATATTTGTAAAGAAGATTAACTGAAAGATGACAGTGATAAGAACAAACAGTTTTAAAGGAACAGAGTCAGAAACTATCACGAAGCCGAAGAAGAATTCGATAAATGTAACAAATTGCGAGCCTTTAAAACTTATGCTACACACAACATTGTCATTCAAAAATCTGGTTCAAGTTCAAGATTCTGTTGTGGCCCTTCCTGAACCTGCTCTCATGTTTTCACCCCGACCTGTTTGTGAACTCGATGCTGCAGCTGTTAAGCTTCAAAAAGTATACAAGAGTTACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATGGTTGGTGTTATGATAATTAATCCTGTTCCATTTCAATATCTGTGTTTGTGTACATGTTTTCTATTCAATTTTATGTTTATTGAACAAATATCGTACATGTATGTAGGTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTG</genome_strand>
        <mrna_strand>TTTTCCTTTGTTCTTGTGTTGTATCTTATATTTGTAAAGAAGATTAACTGAAAGATGACAGTGATAAGAACAAACAGTTTTAAAGGAACAGAGTCAGAAACTATCACGAAGCCGAAGAAGAATTCGATAAATGTAACAAATTGCGAGCCTTTAAAACTTATGCTACACACAACATTGTCATTCAAAAATCTGGTTCAAGTTCAAGATTCTGTTGTGGCCCTTCCTGAACCTGCTCTCATGTTTTCACCCCGACCTGTTTGTGAACTCGATGCTGCAGCTGTTAAGCTTCAAAAAGTATACAAGAGTTACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATG..........................................................................................................GTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E210865" ref_strand="+" ref_description="SGN-E210865 	[cLEC-69-A15]">
      <seq>agaagattaactgaaagatgacagtgataagaacaaacagttttaaaggaacagagtcagaaactatcacgaagccgaagaagaattcgataaatgtaacaaattgcgagcctttagaacttatgctacacacaacattgtcattcaaaaatctggttcaagttcaagattctgttgtggcccttcctgaacctgctctcatgttttccccccgacctgtttgtgaactcgatgctgcagctgttaagcttcaaaaagtatacgagagttacaggactacaagaaatctacctgattgtgctgttgttggacaagaattatggtggaaggcattagattttgcagctttgaagagaagttctgtttcatttttcaacgttgaaaagcccgagactgctgtttctcgatgggctagagcacgtacaagagctgctaaagttggaaaaggattgtccaaagatgaaaaagctcaaaaattggctctgcagcattggctataagctattgatccacgacatcgttatggccacaacttgcacttctattatgatttgtggtttttgagcgacagctctcagcctttcttctactggctggacgttggagatgggaaagaataagcctcgagaaatgtccaaggacaacattgcaccatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="10511" stop="12071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10811" g_stop="11132" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11133" i_stop="11238" i_length="106">
            <donor d_prob="0.342" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11239" g_stop="11419" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="503" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11420" i_stop="11507" i_length="88">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11508" g_stop="11596" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="592" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11597" i_stop="11703" i_length="107">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11704" g_stop="11771" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="659" r_length="67" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E210865" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10811" e_stop="11132"/>
          <exon e_start="11239" e_stop="11419"/>
          <exon e_start="11508" e_stop="11596"/>
          <exon e_start="11704" e_stop="11771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATTAACTGAAAGATGACAGTGATAAGAACAAACAGTTTTAAAGGAACAGAGTCAGAAACTATCACGAAGCCGAAGAAGAATTCGATAAATGTAACAAATTGCGAGCCTTTAAAACTTATGCTACACACAACATTGTCATTCAAAAATCTGGTTCAAGTTCAAGATTCTGTTGTGGCCCTTCCTGAACCTGCTCTCATGTTTTCACCCCGACCTGTTTGTGAACTCGATGCTGCAGCTGTTAAGCTTCAAAAAGTATACAAGAGTTACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATGGTTGGTGTTATGATAATTAATCCTGTTCCATTTCAATATCTGTGTTTGTGTACATGTTTTCTATTCAATTTTATGTTTATTGAACAAATATCGTACATGTATGTAGGTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTGGGCAAATAAGTGATTTTCTTTCATGTAAGCTAAATTTTCGTATGATGTAGCAATTGACTCTTCGTTTTCTTTCTCTGTAGATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTGGTGAGTAGTTCATCGCGAATATTACATACTAAATGTTTTGAATTTGTAGTGTTCCAATGAGAAATGTTCTCTTGATCTGATCAGTTTCCCTTTTTTTGGCTATTAAGGTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATGTCCAAGGACAAAATTGCACCATCAAT</genome_strand>
        <mrna_strand>AGAAGATTAACTGAAAGATGACAGTGATAAGAACAAACAGTTTTAAAGGAACAGAGTCAGAAACTATCACGAAGCCGAAGAAGAATTCGATAAATGTAACAAATTGCGAGCCTTTAGAACTTATGCTACACACAACATTGTCATTCAAAAATCTGGTTCAAGTTCAAGATTCTGTTGTGGCCCTTCCTGAACCTGCTCTCATGTTTTCCCCCCGACCTGTTTGTGAACTCGATGCTGCAGCTGTTAAGCTTCAAAAAGTATACGAGAGTTACAGGACTACAAGAAATCTACCTGATTGTGCTGTTGTTGGACAAGAATTATG..........................................................................................................GTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAGACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAAGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTATAAGCT........................................................................................ATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGACAGCTCTCAGCCTTTCTTCTACTG...........................................................................................................GCTGGACGTTGGAGATGGGAAAG-AATAAGCCTCGAGAAATGTCCAAGGACAACATTGCACCATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E206667" ref_strand="+" ref_description="SGN-E206667 	[cLEC-31-J18]">
      <seq>aaaaagtatacaagagttacaggactagaagaaatctagctgattgtgctgttgttgtagaagaattatggtggaaggcattagattttgcagctttgaagagaagttctgtttcatttttcaacgttgaaaagcccgaaactgctgtttctcgatgggctagagcacgtacaagagctgctaaggttggaaaaggattgtccaaagatgaaaaagctcaaaaattggctctgcagcattggctagaagctattgatccacgacatcgttatggccacaacttgcacttctattatgatttgtggtttttgagcgaaagctctcagcctttcttctactggttggacgttggagatgggaaagaaataaacctcgagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="10763" stop="12044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11063" g_stop="11132" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11133" i_stop="11238" i_length="106">
            <donor d_prob="0.342" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11239" g_stop="11419" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="251" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11420" i_stop="11507" i_length="88">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11508" g_stop="11596" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="340" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11597" i_stop="11703" i_length="107">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11704" g_stop="11744" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="381" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E206667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11063" e_stop="11132"/>
          <exon e_start="11239" e_stop="11419"/>
          <exon e_start="11508" e_stop="11596"/>
          <exon e_start="11704" e_stop="11744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTATACAAGAGTTACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATGGTTGGTGTTATGATAATTAATCCTGTTCCATTTCAATATCTGTGTTTGTGTACATGTTTTCTATTCAATTTTATGTTTATTGAACAAATATCGTACATGTATGTAGGTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTGGGCAAATAAGTGATTTTCTTTCATGTAAGCTAAATTTTCGTATGATGTAGCAATTGACTCTTCGTTTTCTTTCTCTGTAGATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTGGTGAGTAGTTCATCGCGAATATTACATACTAAATGTTTTGAATTTGTAGTGTTCCAATGAGAAATGTTCTCTTGATCTGATCAGTTTCCCTTTTTTTGGCTATTAAGGTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAAT</genome_strand>
        <mrna_strand>AAAAAGTATACAAGAGTTACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATG..........................................................................................................GTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCT........................................................................................ATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTG...........................................................................................................GTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E397658" ref_strand="+" ref_description="SGN-E397658 	[TUS-46-C14]">
      <seq>tacaggactagaagaaatctagctgattgtgctgttgttgtagaagaattatggtggaaggcattagattttgcagctttgaagagaagttctgtttcatttttcaacgttgaaaagcccgaaactgctgtttctcgatgggctagagcacgtacaagagctgctaaggttggaaaaggattgtccaaagatgaaaaagctcaaaaattggctctgcagcattggctagaagctattgatccacgacatcgttatggccacaacttgcacttctattatgatttgtggtttttgagcgaaagctctcagcctttcttctactggttggacgttggagatgggaaagaaataaacctcgagaaatgtccaaggacaaaattgcaccatcaatgcatcaagtatctcggaccaaaggagcgggaatcatatgaagtagtcattgagaatgggaagcttgtatataaacaaagtggtgtatcagttaagtcagtagagggttccaagtcgatatttgttcttagcacaacaaggacattgtatgtaggacagaagcaaaagggcacatttcaacattcgagtttcctatcaggtggtgctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="10780" stop="12382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11080" g_stop="11132" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11133" i_stop="11238" i_length="106">
            <donor d_prob="0.342" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11239" g_stop="11419" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="234" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11420" i_stop="11507" i_length="88">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11508" g_stop="11596" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="323" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11597" i_stop="11703" i_length="107">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11704" g_stop="11791" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="411" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11792" i_stop="11893" i_length="102">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11894" g_stop="12082" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="600" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E397658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11080" e_stop="11132"/>
          <exon e_start="11239" e_stop="11419"/>
          <exon e_start="11508" e_stop="11596"/>
          <exon e_start="11704" e_stop="11791"/>
          <exon e_start="11894" e_stop="12082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATGGTTGGTGTTATGATAATTAATCCTGTTCCATTTCAATATCTGTGTTTGTGTACATGTTTTCTATTCAATTTTATGTTTATTGAACAAATATCGTACATGTATGTAGGTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTGGGCAAATAAGTGATTTTCTTTCATGTAAGCTAAATTTTCGTATGATGTAGCAATTGACTCTTCGTTTTCTTTCTCTGTAGATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTGGTGAGTAGTTCATCGCGAATATTACATACTAAATGTTTTGAATTTGTAGTGTTCCAATGAGAAATGTTCTCTTGATCTGATCAGTTTCCCTTTTTTTGGCTATTAAGGTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATGTCCAAGGACAAAATTGCACCATCAATGCATCAAGTATCTCGGACCAGTAAGTTCTTATGAAACTTAATTTACCAGATGTCTTTGGATCATTCAATTACATGTGTTTAAACTTCTTTTTGACTTAATTGCTTATGCTTTACAATTTCAGAAGGAGCGGGAATCATATGAAGTAGTCATTGAGAATGGGAAGCTTGTATATAAACAAAGTGGTGTATCAGTTAAGTCAGTAGAGGGTTCCAAGTCGATATTTGTTCTTAGCACAACAAGGACATTGTATGTAGGACAGAAGCAAAAGGGCACATTTCAACATTCGAGTTTCCTATCAGGTGGTGCTATC</genome_strand>
        <mrna_strand>TACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATG..........................................................................................................GTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCT........................................................................................ATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTG...........................................................................................................GTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATGTCCAAGGACAAAATTGCACCATCAATGCATCAAGTATCTCGGACCA......................................................................................................AAGGAGCGGGAATCATATGAAGTAGTCATTGAGAATGGGAAGCTTGTATATAAACAAAGTGGTGTATCAGTTAAGTCAGTAGAGGGTTCCAAGTCGATATTTGTTCTTAGCACAACAAGGACATTGTATGTAGGACAGAAGCAAAAGGGCACATTTCAACATTCGAGTTTCCTATCAGGTGGTGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E398750" ref_strand="+" ref_description="SGN-E398750 	[TUS-46-C15]">
      <seq>tacaggactagaagaaatctagctgattgtgctgttgttgtagaagaattatggtggaaggcattagattttgcatctttgaagagaagttctgtttcatttttcaacgttgaaaagcccgaaactgctgtttctcgatgggctagagcacgtacaagagctgctaaggttggaaaaggattgtccaaagatgaaaaagctcaaaaattggctctgcagcattggctagaagctattgatccacgacatcgttatggccacaacttgcacttctattatgatttgtggtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="10780" stop="11867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11080" g_stop="11132" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11133" i_stop="11238" i_length="106">
            <donor d_prob="0.342" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11239" g_stop="11419" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="234" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11420" i_stop="11507" i_length="88">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11508" g_stop="11567" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="294" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E398750" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11080" e_stop="11132"/>
          <exon e_start="11239" e_stop="11419"/>
          <exon e_start="11508" e_stop="11567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATGGTTGGTGTTATGATAATTAATCCTGTTCCATTTCAATATCTGTGTTTGTGTACATGTTTTCTATTCAATTTTATGTTTATTGAACAAATATCGTACATGTATGTAGGTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTGGGCAAATAAGTGATTTTCTTTCATGTAAGCTAAATTTTCGTATGATGTAGCAATTGACTCTTCGTTTTCTTTCTCTGTAGATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTG</genome_strand>
        <mrna_strand>TACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATG..........................................................................................................GTGGAAGGCATTAGATTTTGCATCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCT........................................................................................ATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E375902" ref_strand="+" ref_description="SGN-E375902 	[TUS-15-K24]">
      <seq>acaggactagaagaaatctagctgattgtgctgttgttgtagaagaattatggtggaaggcattagattttgcagctttgaagagaagttctgtttcatttttcaacgttgaaaagcccgaaactgctgtttctcgatgggctagagcacgtacaagagctgctaaggttggaaaaggattgtccaaagatgaaaaagctcaaaaattggctctgcagcattggctagaagctattgatccacgacatcgttatggccacaacttgcacttctattatgatttgtggtttttgagcgaaagctctcagcctttcttctactggttggacgttggagatgggaaagaaataaacctcgagaaatgtccaaggacaaaattgcaccatcaatgcatcaagtatctcggaccaaaggagcgggaatcatatgaagtagtcattgagaatgggaagcttgtatataaacaaagtggtgtatcagttaagtcagtagagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="10781" stop="12280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11081" g_stop="11132" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11133" i_stop="11238" i_length="106">
            <donor d_prob="0.342" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11239" g_stop="11419" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="233" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11420" i_stop="11507" i_length="88">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11508" g_stop="11596" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="322" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11597" i_stop="11703" i_length="107">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11704" g_stop="11791" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="410" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11792" i_stop="11893" i_length="102">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11894" g_stop="11980" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="497" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E375902" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11081" e_stop="11132"/>
          <exon e_start="11239" e_stop="11419"/>
          <exon e_start="11508" e_stop="11596"/>
          <exon e_start="11704" e_stop="11791"/>
          <exon e_start="11894" e_stop="11980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATGGTTGGTGTTATGATAATTAATCCTGTTCCATTTCAATATCTGTGTTTGTGTACATGTTTTCTATTCAATTTTATGTTTATTGAACAAATATCGTACATGTATGTAGGTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTGGGCAAATAAGTGATTTTCTTTCATGTAAGCTAAATTTTCGTATGATGTAGCAATTGACTCTTCGTTTTCTTTCTCTGTAGATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTGGTGAGTAGTTCATCGCGAATATTACATACTAAATGTTTTGAATTTGTAGTGTTCCAATGAGAAATGTTCTCTTGATCTGATCAGTTTCCCTTTTTTTGGCTATTAAGGTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATGTCCAAGGACAAAATTGCACCATCAATGCATCAAGTATCTCGGACCAGTAAGTTCTTATGAAACTTAATTTACCAGATGTCTTTGGATCATTCAATTACATGTGTTTAAACTTCTTTTTGACTTAATTGCTTATGCTTTACAATTTCAGAAGGAGCGGGAATCATATGAAGTAGTCATTGAGAATGGGAAGCTTGTATATAAACAAAGTGGTGTATCAGTTAAGTCAGTAGAGGGT</genome_strand>
        <mrna_strand>ACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATG..........................................................................................................GTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCT........................................................................................ATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTG...........................................................................................................GTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATGTCCAAGGACAAAATTGCACCATCAATGCATCAAGTATCTCGGACCA......................................................................................................AAGGAGCGGGAATCATATGAAGTAGTCATTGAGAATGGGAAGCTTGTATATAAACAAAGTGGTGTATCAGTTAAGTCAGTAGAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E204813" ref_strand="+" ref_description="SGN-E204813 	[cLEC-14-G14]">
      <seq>acaggactagaagaaatctagctgattgtgctgttgttgtagaagaattatggtggaaggcattagattttgcagctttgaagagaagttctgtttcatttttcaacgttgaaaagcccgaaactgctgtttctcgatgggctagagcacgtacaagagctgctaaggttggaaaaggattgtccaaagatgaaaaagctcaaaaattggctctgcagcattggctagaagctattgatccacgacatcgttatggccacaacttgcacttctattatgatttgtggtttttgagcgaaagctctcagcctttcttctactggttggacgttggagatgggaaagaaataaacctcgagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="10781" stop="12045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11081" g_stop="11132" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11133" i_stop="11238" i_length="106">
            <donor d_prob="0.342" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11239" g_stop="11419" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="233" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11420" i_stop="11507" i_length="88">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11508" g_stop="11596" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="322" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11597" i_stop="11703" i_length="107">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11704" g_stop="11745" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="364" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E204813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11081" e_stop="11132"/>
          <exon e_start="11239" e_stop="11419"/>
          <exon e_start="11508" e_stop="11596"/>
          <exon e_start="11704" e_stop="11745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATGGTTGGTGTTATGATAATTAATCCTGTTCCATTTCAATATCTGTGTTTGTGTACATGTTTTCTATTCAATTTTATGTTTATTGAACAAATATCGTACATGTATGTAGGTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTGGGCAAATAAGTGATTTTCTTTCATGTAAGCTAAATTTTCGTATGATGTAGCAATTGACTCTTCGTTTTCTTTCTCTGTAGATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTGGTGAGTAGTTCATCGCGAATATTACATACTAAATGTTTTGAATTTGTAGTGTTCCAATGAGAAATGTTCTCTTGATCTGATCAGTTTCCCTTTTTTTGGCTATTAAGGTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATG</genome_strand>
        <mrna_strand>ACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATG..........................................................................................................GTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCT........................................................................................ATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTG...........................................................................................................GTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E200955" ref_strand="+" ref_description="SGN-E200955 	[cLEC-5-C15]">
      <seq>tgattgtgctgttgttgtagaagaattatggtggaaggcattagattttgcagctttgaagagaagttctgtttcatttttcaacgttgaaaagcccgaaactgctgtttctcgatgggctagagcacgtacaagagctgctaaggttggaaaaggattgtccaaagatgaaaaagctcaaaaattggctctgcagcattggctagaagctattgatccacgacatcgttatggccacaacttgcacttctattatgatttgtggtttttgagcgaaagctctcagcctttcttctactggttggacgttggagatgggaaagaaataaacctcgagaaatgtccaaggacaaaattgcaccatcaatgcatcaagtatctcggaccaaaggagcgggaatcatatgaagtagtcattgagaatgggaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="10803" stop="12237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11103" g_stop="11132" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11133" i_stop="11238" i_length="106">
            <donor d_prob="0.342" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11239" g_stop="11419" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="211" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11420" i_stop="11507" i_length="88">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11508" g_stop="11596" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="300" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11597" i_stop="11703" i_length="107">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11704" g_stop="11791" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="388" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11792" i_stop="11893" i_length="102">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11894" g_stop="11937" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="432" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E200955" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11103" e_stop="11132"/>
          <exon e_start="11239" e_stop="11419"/>
          <exon e_start="11508" e_stop="11596"/>
          <exon e_start="11704" e_stop="11791"/>
          <exon e_start="11894" e_stop="11937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTGTGCTGTTGTTGTAGAAGAATTATGGTTGGTGTTATGATAATTAATCCTGTTCCATTTCAATATCTGTGTTTGTGTACATGTTTTCTATTCAATTTTATGTTTATTGAACAAATATCGTACATGTATGTAGGTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTGGGCAAATAAGTGATTTTCTTTCATGTAAGCTAAATTTTCGTATGATGTAGCAATTGACTCTTCGTTTTCTTTCTCTGTAGATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTGGTGAGTAGTTCATCGCGAATATTACATACTAAATGTTTTGAATTTGTAGTGTTCCAATGAGAAATGTTCTCTTGATCTGATCAGTTTCCCTTTTTTTGGCTATTAAGGTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATGTCCAAGGACAAAATTGCACCATCAATGCATCAAGTATCTCGGACCAGTAAGTTCTTATGAAACTTAATTTACCAGATGTCTTTGGATCATTCAATTACATGTGTTTAAACTTCTTTTTGACTTAATTGCTTATGCTTTACAATTTCAGAAGGAGCGGGAATCATATGAAGTAGTCATTGAGAATGGGAAGCT</genome_strand>
        <mrna_strand>TGATTGTGCTGTTGTTGTAGAAGAATTATG..........................................................................................................GTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCT........................................................................................ATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTG...........................................................................................................GTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATGTCCAAGGACAAAATTGCACCATCAATGCATCAAGTATCTCGGACCA......................................................................................................AAGGAGCGGGAATCATATGAAGTAGTCATTGAGAATGGGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E201564" ref_strand="+" ref_description="SGN-E201564 	[cLEC-4-P14]">
      <seq>gtccaaagatgaaaaagctcaaaaattggctctgcagcattggctagaagctattgatccacgacatcgttatggccacaacttgcacttctattatgatttgtggtttttgagcgaaagctctcagcctttcttctactggttggacgttggagatgggaaagaaataaacctcgagaaatgtccaaggacaaaattgcaccatcaatgcatcaagtatctcggaccaaaggagcgggaatcatatgaagtagtcattgagaatgggaagcttgtatataaacaaagtggtgtatcagttaagtcagtagagggttccaagtcgatatttgttcttagcacaacaaggacattgtatgtaggacagaagcaaaagggcacatttcaacattcgagtttcctatcaggtggtgctatcacagcagctggaagactagttgctcattctggaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="11068" stop="12420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11368" g_stop="11419" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11420" i_stop="11507" i_length="88">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11508" g_stop="11596" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="141" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11597" i_stop="11703" i_length="107">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11704" g_stop="11791" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="229" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11792" i_stop="11893" i_length="102">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11894" g_stop="12120" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="456" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E201564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11368" e_stop="11419"/>
          <exon e_start="11508" e_stop="11596"/>
          <exon e_start="11704" e_stop="11791"/>
          <exon e_start="11894" e_stop="12120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTGGGCAAATAAGTGATTTTCTTTCATGTAAGCTAAATTTTCGTATGATGTAGCAATTGACTCTTCGTTTTCTTTCTCTGTAGATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTGGTGAGTAGTTCATCGCGAATATTACATACTAAATGTTTTGAATTTGTAGTGTTCCAATGAGAAATGTTCTCTTGATCTGATCAGTTTCCCTTTTTTTGGCTATTAAGGTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATGTCCAAGGACAAAATTGCACCATCAATGCATCAAGTATCTCGGACCAGTAAGTTCTTATGAAACTTAATTTACCAGATGTCTTTGGATCATTCAATTACATGTGTTTAAACTTCTTTTTGACTTAATTGCTTATGCTTTACAATTTCAGAAGGAGCGGGAATCATATGAAGTAGTCATTGAGAATGGGAAGCTTGTATATAAACAAAGTGGTGTATCAGTTAAGTCAGTAGAGGGTTCCAAGTCGATATTTGTTCTTAGCACAACAAGGACATTGTATGTAGGACAGAAGCAAAAGGGCACATTTCAACATTCGAGTTTCCTATCAGGTGGTGCTATCACAGCAGCTGGAAGACTAGTTGCTCATTCTGGAATTCT</genome_strand>
        <mrna_strand>GTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCT........................................................................................ATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTG...........................................................................................................GTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATGTCCAAGGACAAAATTGCACCATCAATGCATCAAGTATCTCGGACCA......................................................................................................AAGGAGCGGGAATCATATGAAGTAGTCATTGAGAATGGGAAGCTTGTATATAAACAAAGTGGTGTATCAGTTAAGTCAGTAGAGGGTTCCAAGTCGATATTTGTTCTTAGCACAACAAGGACATTGTATGTAGGACAGAAGCAAAAGGGCACATTTCAACATTCGAGTTTCCTATCAGGTGGTGCTATCACAGCAGCTGGAAGACTAGTTGCTCATTCTGGAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E392230" ref_strand="+" ref_description="SGN-E392230 	[TUS-36-G4]">
      <seq>tcactatcacccaactgaagagaacttcaaggagttcataagctttcttgaagaacacaaagttgatcttacaaatgttaagagatgtgcagttgatgacgacaatctctcagaggcatcaaacagccaaccatctgttgatctttcaattgctaaagaatctgaagaaagaaacacatcagaatccaagaaaccagaggatgtcatcatcaataagaaagcacaaacatttagcttctccaaacatttgtcaagcaaatggacaagtggaactggacctcgtattggctgtgttagggattaccctacagaactacaattccgagcacttgaacaagttaatttgtcgcctcgggtggtcaatggagatttcaacttctctagtccaatcccctcaccaaggccaagcccaaacattaggctatcacctaggattgcacatatgggactaccgagtccccggacaccaatttctgtgcctaactaagaaacattccaaacaaatgaagtgacagacctcctcgactccacacggaaaattagcccgcgggaggaacatactaactccaatcttcaacttatttgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="11938" stop="13224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12238" g_stop="12319" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12320" i_stop="12417" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12418" g_stop="12924" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="589" r_length="507" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E392230" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12238" e_stop="12319"/>
          <exon e_start="12418" e_stop="12924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTATCACCCAACTGAAGAGAACTTCAAGGAGTTCATAAGCTTTCTTGAAGAACACAAAGTTGATCTTACAAATGTTAAGGTACGTAAATGTTGAAATCATTGACGTACTATATATATATGGTGTTACGTTCAACAACATTGCTAACAGTCATATACATGATTTATTTTCTTATACAGAGATGTGCAGTTGATGACGACAATCTCTCAGAGGCATCAAACAGCCAACCATCTGTTGATCTTTCAATTGCTAAAGAATCTGAAGAAAGAAACACATCAGAATCCAAGAAACCAGAGGATGTCATCATCAATAAGAAAGCACAAACATTTAGCTTCTCCAAACATTTGTCAAGCAAATGGACAAGTGGAACTGGACCTCGTATTGGCTGTGTTAGGGATTACCCTACAGAACTACAATTCCGAGCACTTGAACAAGTTAATTTGTCGCCTCGGGTGGTCAATGGAGATTTCAACTTCTCTAGTCCAATCCCCTCACCAAGGCCAAGCCCAAACATTAGGCTATCACCTAGGATTGCACATATGGGACTACCGAGTCCCCGGACACCAATTTCTGTGCCTAACTAAGAAACATTCCAAACAAATGAAGTGACAGACCTCCTCGACTCCACACGGAAAATTAGCCCGCGGGAGGAACATACTAACTCAAATCTTCAACTTATTTGTTCA</genome_strand>
        <mrna_strand>TCACTATCACCCAACTGAAGAGAACTTCAAGGAGTTCATAAGCTTTCTTGAAGAACACAAAGTTGATCTTACAAATGTTAAG..................................................................................................AGATGTGCAGTTGATGACGACAATCTCTCAGAGGCATCAAACAGCCAACCATCTGTTGATCTTTCAATTGCTAAAGAATCTGAAGAAAGAAACACATCAGAATCCAAGAAACCAGAGGATGTCATCATCAATAAGAAAGCACAAACATTTAGCTTCTCCAAACATTTGTCAAGCAAATGGACAAGTGGAACTGGACCTCGTATTGGCTGTGTTAGGGATTACCCTACAGAACTACAATTCCGAGCACTTGAACAAGTTAATTTGTCGCCTCGGGTGGTCAATGGAGATTTCAACTTCTCTAGTCCAATCCCCTCACCAAGGCCAAGCCCAAACATTAGGCTATCACCTAGGATTGCACATATGGGACTACCGAGTCCCCGGACACCAATTTCTGTGCCTAACTAAGAAACATTCCAAACAAATGAAGTGACAGACCTCCTCGACTCCACACGGAAAATTAGCCCGCGGGAGGAACATACTAACTCCAATCTTCAACTTATTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E231388" ref_strand="+" ref_description="SGN-E231388 	[cLED-10-L9]">
      <seq>cactatcacccaactgaagagaacttcaaggagttcataagctttcttgaagaacacaaagttgatcttacaaatgttaagagatgtgcagttgatgacgacaatctctcagaggcatcaaacagccaaccatctgctgatctttcaattgctaaagaatctgaagaaagaaacacatcagaatccaagaaaccagaggatgtgatcatcaataagaaagcacaaacatttagcttcttcaaacatttgtcaagcaaatggacaagtggaactggacctcgtattggctgtgttagggattaccctacagaactacaatttcgagcacttgaacaagttaatttgtcgcctcgggtggtcaatggagatttcaacttctctagtccaatcccctcaccaaggccaagcccaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="11939" stop="13052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12239" g_stop="12319" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12320" i_stop="12417" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12418" g_stop="12752" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="416" r_length="335" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E231388" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12239" e_stop="12319"/>
          <exon e_start="12418" e_stop="12752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATCACCCAACTGAAGAGAACTTCAAGGAGTTCATAAGCTTTCTTGAAGAACACAAAGTTGATCTTACAAATGTTAAGGTACGTAAATGTTGAAATCATTGACGTACTATATATATATGGTGTTACGTTCAACAACATTGCTAACAGTCATATACATGATTTATTTTCTTATACAGAGATGTGCAGTTGATGACGACAATCTCTCAGAGGCATCAAACAGCCAACCATCTGTTGATCTTTCAATTGCTAAAGAATCTGAAGAAAGAAACACATCAGAATCCAAGAAACCAGAGGATGTCATCATCAATAAGAAAGCACAAACATTTAGCTTCTCCAAACATTTGTCAAGCAAATGGACAAGTGGAACTGGACCTCGTATTGGCTGTGTTAGGGATTACCCTACAGAACTACAATTCCGAGCACTTGAACAAGTTAATTTGTCGCCTCGGGTGGTCAATGGAGATTTCAACTTCTCTAGTCCAATCCCCTCACCAAGGCCAAGCCCAAACAT</genome_strand>
        <mrna_strand>CACTATCACCCAACTGAAGAGAACTTCAAGGAGTTCATAAGCTTTCTTGAAGAACACAAAGTTGATCTTACAAATGTTAAG..................................................................................................AGATGTGCAGTTGATGACGACAATCTCTCAGAGGCATCAAACAGCCAACCATCTGCTGATCTTTCAATTGCTAAAGAATCTGAAGAAAGAAACACATCAGAATCCAAGAAACCAGAGGATGTGATCATCAATAAGAAAGCACAAACATTTAGCTTCTTCAAACATTTGTCAAGCAAATGGACAAGTGGAACTGGACCTCGTATTGGCTGTGTTAGGGATTACCCTACAGAACTACAATTTCGAGCACTTGAACAAGTTAATTTGTCGCCTCGGGTGGTCAATGGAGATTTCAACTTCTCTAGTCCAATCCCCTCACCAAGGCCAAGCCCAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E233519" ref_strand="+" ref_description="SGN-E233519 	[cLED-9-C6]">
      <seq>ctgaagagaacttcaaggggttcataagctatcttgaagaacacaaagttgatcttacaaatgttaagagatgtgcagttgatgacgacaatctctcagaggcatcaaacagccaaccatctgttgatctttcaattgctaaagaatctgaagaaagaaacacatcagaatccaagaaaccagaggatgtcatcatcaataagaaagcacaaacatttagcttctccaaacatttgtcaagcaaatggacaagtggaactggacctcgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="11952" stop="12920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12252" g_stop="12319" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12320" i_stop="12417" i_length="98">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12418" g_stop="12620" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="271" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E233519" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12252" e_stop="12319"/>
          <exon e_start="12418" e_stop="12620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAGAACTTCAAGGAGTTCATAAGCTTTCTTGAAGAACACAAAGTTGATCTTACAAATGTTAAGGTACGTAAATGTTGAAATCATTGACGTACTATATATATATGGTGTTACGTTCAACAACATTGCTAACAGTCATATACATGATTTATTTTCTTATACAGAGATGTGCAGTTGATGACGACAATCTCTCAGAGGCATCAAACAGCCAACCATCTGTTGATCTTTCAATTGCTAAAGAATCTGAAGAAAGAAACACATCAGAATCCAAGAAACCAGAGGATGTCATCATCAATAAGAAAGCACAAACATTTAGCTTCTCCAAACATTTGTCAAGCAAATGGACAAGTGGAACTGGACCTCGTAT</genome_strand>
        <mrna_strand>CTGAAGAGAACTTCAAGGGGTTCATAAGCTATCTTGAAGAACACAAAGTTGATCTTACAAATGTTAAG..................................................................................................AGATGTGCAGTTGATGACGACAATCTCTCAGAGGCATCAAACAGCCAACCATCTGTTGATCTTTCAATTGCTAAAGAATCTGAAGAAAGAAACACATCAGAATCCAAGAAACCAGAGGATGTCATCATCAATAAGAAAGCACAAACATTTAGCTTCTCCAAACATTTGTCAAGCAAATGGACAAGTGGAACTGGACCTCGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E212678" ref_strand="+" ref_description="SGN-E212678 	[cLEC-73-C12]">
      <seq>accataatcatgtcttgtcttatttgaaaatccaaattcaattggaatacaaatatgaatgaacaaataagttgaagatttgagttagtatgttcctcccgcgggctaattttccgtgtggagtcgaggaggtctgtcacttcatttgtttggaatgtttcttagttaggcacagaaattggtgtccggggactcggtagtcccatatgtgcaatcctaggtgatagcctaatgtttgggcttggccttggtgaggggattggactanagaagttgaaatctccattgaccacccgaggcgacaaattaacttgttcaagtgctcggaattgtagttctgtagggtaatccctaacacagccaatacgaggtccagttccacttgtccatttgcttgacaaatgtttggagaagctaaatgtttgtgctttcttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="-" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="13283" stop="12246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12983" g_stop="12546" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="-" ref_id="SGN-E212678" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12983" e_stop="12546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATAATCATGTCTTGTCTTATTTGAAAATCCAAATTCAATTGGAATACAAATATGAATGAACAAATAAGTTGAAGATTTGAGTTAGTATGTTCCTCCCGCGGGCTAATTTTCCGTGTGGAGTCGAGGAGGTCTGTCACTTCATTTGTTTGGAATGTTTCTTAGTTAGGCACAGAAATTGGTGTCCGGGGACTCGGTAGTCCCATATGTGCAATCCTAGGTGATAGCCTAATGTTTGGGCTTGGCCTTGGTGAGGGGATTGGACTAGAGAAGTTGAAATCTCCATTGACCACCCGAGGCGACAAATTAACTTGTTCAAGTGCTCGGAATTGTAGTTCTGTAGGGTAATCCCTAACACAGCCAATACGAGGTCCAGTTCCACTTGTCCATTTGCTTGACAAATGTTTGGAGAAGCTAAATGTTTGTGCTTTCTTATTG</genome_strand>
        <mrna_strand>ACCATAATCATGTCTTGTCTTATTTGAAAATCCAAATTCAATTGGAATACAAATATGAATGAACAAATAAGTTGAAGATTTGAGTTAGTATGTTCCTCCCGCGGGCTAATTTTCCGTGTGGAGTCGAGGAGGTCTGTCACTTCATTTGTTTGGAATGTTTCTTAGTTAGGCACAGAAATTGGTGTCCGGGGACTCGGTAGTCCCATATGTGCAATCCTAGGTGATAGCCTAATGTTTGGGCTTGGCCTTGGTGAGGGGATTGGACTANAGAAGTTGAAATCTCCATTGACCACCCGAGGCGACAAATTAACTTGTTCAAGTGCTCGGAATTGTAGTTCTGTAGGGTAATCCCTAACACAGCCAATACGAGGTCCAGTTCCACTTGTCCATTTGCTTGACAAATGTTTGGAGAAGCTAAATGTTTGTGCTTTCTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E279139" ref_strand="+" ref_description="SGN-E279139 	[cLEL-4-H9]">
      <seq>gcacgagacaaatggcaagatggtctgaaacggtccgttacacattgcttttagttatttgctcagttctccacacacctctgagctcaccgcttcacccaactatatatagaaacccaattctgtaatcaacaaatggaagaggagaaaactatgttgattgatgtgaatgagaaagagatgaatgttaatggtggagtagtagtagaggtgaaagaagaaccagttatatttattaatgatgaagatgacattattggggattcagtaccaaagcctttggatgggttgcgtgatgtaggtccacctccgtttttgaagaagacgtttgaaatggtggatgatccaaataccgactctataatctcatggagtaacagtcaaaacagctttgttgtttgggatcctcacaaattttcaattcatcttctacctaaacattntaagcacaacaacttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="82710" stop="83768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83008" g_stop="83468" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E279139" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83008" e_stop="83468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGATACAAATGGCAAGATGGTCTGAAACGGTCCGTTACACATTGCTTTTAGTTATTTGCTCAGTTTTCCACACACCTCTGAGCTCACCGCTTCACCCAACTATATATAGAAACCCAATTCTGTAATCAACAAATGGAAGAGGAGAAAACTATGTTGATTGATGTGAATGAGAAAGAGATGAATGTTAATGGTGGAGTAGTAGTAGAGGTGAAAGAAGAACCAGTTATATTTATTAATGATGAAGATGACATTATTGGGGATTCAGTACCAAAGCCTTTGGATGGGTTGCGTGATGTAGGTCCACCTCCGTTTTTGAAGAAGACGTTTGAAATGGTGGATGATCCAAATACCGACTCTATAATCTCATGGAGTAACAGTCAAAACAGCTTTGTTGTTTGGGATCCTCACAAATTTTCAATTCATCTTCTACCTAAACATTTTAAGCACAACAACTTCTC</genome_strand>
        <mrna_strand>GCACGAGACAAATGGCAAGATGGTCTGAAACGGTCCGTTACACATTGCTTTTAGTTATTTGCTCAGTTCTCCACACACCTCTGAGCTCACCGCTTCACCCAACTATATATAGAAACCCAATTCTGTAATCAACAAATGGAAGAGGAGAAAACTATGTTGATTGATGTGAATGAGAAAGAGATGAATGTTAATGGTGGAGTAGTAGTAGAGGTGAAAGAAGAACCAGTTATATTTATTAATGATGAAGATGACATTATTGGGGATTCAGTACCAAAGCCTTTGGATGGGTTGCGTGATGTAGGTCCACCTCCGTTTTTGAAGAAGACGTTTGAAATGGTGGATGATCCAAATACCGACTCTATAATCTCATGGAGTAACAGTCAAAACAGCTTTGTTGTTTGGGATCCTCACAAATTTTCAATTCATCTTCTACCTAAACATTNTAAGCACAACAACTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E391753" ref_strand="+" ref_description="SGN-E391753 	[TUS-24-G24]">
      <seq>ttttccacacacctctgagctcaccgcttcacccaactatatatagaaacccaattctgtaatcaacaaatggaagaggagaaaactatgttgattgatgtgaatgagaaagagatgaatgttaatggtggagtagtagtagaggtgaaagaagaaccagttatatttattaatgatgaagatgacattattggggattcagtaccaaagcctttggatgggttgcgtgatgtaggtccacctccgtttttgaagaagacgtttgaaatggtggatgatccaaataccgactctataatctcatggagtaacagtcaaaacagctttgttgtttgggatcctcacaaattttcaattcatcttctacctaaacattttaagcacaacaacttctctagctttatccgccagctcaatacctatcgtttcaggaaaattgattcagatagatgggaatttgcaaatgagggttttcagaaagggaaaaagcatttgctgataaatatcaagagaagaaagcagtatcctcaactaggaggaggaggtggtggaggagcaaaatcttgggtaggaggttgttgcaaggatggaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="82774" stop="84202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83074" g_stop="83496" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83497" i_stop="83730" i_length="234">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83731" g_stop="83902" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="595" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E391753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83074" e_stop="83496"/>
          <exon e_start="83731" e_stop="83902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCACACACCTCTGAGCTCACCGCTTCACCCAACTATATATAGAAACCCAATTCTGTAATCAACAAATGGAAGAGGAGAAAACTATGTTGATTGATGTGAATGAGAAAGAGATGAATGTTAATGGTGGAGTAGTAGTAGAGGTGAAAGAAGAACCAGTTATATTTATTAATGATGAAGATGACATTATTGGGGATTCAGTACCAAAGCCTTTGGATGGGTTGCGTGATGTAGGTCCACCTCCGTTTTTGAAGAAGACGTTTGAAATGGTGGATGATCCAAATACCGACTCTATAATCTCATGGAGTAACAGTCAAAACAGCTTTGTTGTTTGGGATCCTCACAAATTTTCAATTCATCTTCTACCTAAACATTTTAAGCACAACAACTTCTCTAGCTTTATCCGCCAGCTCAATACCTATGTAAGTTTGTACTTGATTTTCCTTAATTAATTAACCAATTTCTACTTCATTTTCACCATCTGCTTCTTCTAATTTTAATAGTAAACTCAATTCCTTTTGTGAAATTGTAATTTGGTTAATAATTGGGTTCTGAATTGGTTTGGTATATCTGACTTGTATCTCCATCCACTGTTTTTATGTTAGATTTATCTTTTGACTATTGTGGTATTTTTATTTTTTTTTGTGGATTTGTAGCGTTTCAGGAAAATTGATTCAGATAGATGGGAATTTGCAAATGAGGGTTTTCAGAAAGGGAAAAAGCATTTGCTGATAAATATCAAGAGAAGAAAGCAGTATCCTCAACTAGGAGGAGGAGGTGGTGGAGGAGCAAAATCTTGGGTAGGAGGTTGTTGCAAGGATGGAACTG</genome_strand>
        <mrna_strand>TTTTCCACACACCTCTGAGCTCACCGCTTCACCCAACTATATATAGAAACCCAATTCTGTAATCAACAAATGGAAGAGGAGAAAACTATGTTGATTGATGTGAATGAGAAAGAGATGAATGTTAATGGTGGAGTAGTAGTAGAGGTGAAAGAAGAACCAGTTATATTTATTAATGATGAAGATGACATTATTGGGGATTCAGTACCAAAGCCTTTGGATGGGTTGCGTGATGTAGGTCCACCTCCGTTTTTGAAGAAGACGTTTGAAATGGTGGATGATCCAAATACCGACTCTATAATCTCATGGAGTAACAGTCAAAACAGCTTTGTTGTTTGGGATCCTCACAAATTTTCAATTCATCTTCTACCTAAACATTTTAAGCACAACAACTTCTCTAGCTTTATCCGCCAGCTCAATACCTAT..........................................................................................................................................................................................................................................CGTTTCAGGAAAATTGATTCAGATAGATGGGAATTTGCAAATGAGGGTTTTCAGAAAGGGAAAAAGCATTTGCTGATAAATATCAAGAGAAGAAAGCAGTATCCTCAACTAGGAGGAGGAGGTGGTGGAGGAGCAAAATCTTGGGTAGGAGGTTGTTGCAAGGATGGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E247723" ref_strand="+" ref_description="SGN-E247723 	[cLEF-42-K16]">
      <seq>tttccacacacctctgagctcaccgcttcacccaactatatatagaaacccaattctgtaatcaacaaatggaagaggagaaaactatgttgattgatgtgaatgagaaagagatgaatgttaatggtggagtagtagtagaggtgaaagaagaaccagttatatttattaatgatgaagatgacattattggggattcagtaccaaagcctttggatgggttgcgtgatgtaggtccacctccgtttttgaagaagacgtttgaaatggtggatgatccaaataccgactctataatctcatggagtaacagtcaaaacagctttgttgtttgggatcctcacaaattttcaattcatcttctacctaaacattttaagcacaacaacttctctagctttatccgccagctcaatacctatcgtttcaggaaaattgattcagatagatgggaatttgcaaatgagggttttcagaaagggaaaaagcatttgctgataaatatcaagagaagaaagcagtatcctcaactangaggaggaggtggtggaggagcaaaatcttgggtaggaggttgttgcaaggatggaactgaagcagcagagatagaaaagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="82775" stop="84226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83075" g_stop="83496" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83497" i_stop="83730" i_length="234">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83731" g_stop="83926" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="618" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E247723" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83075" e_stop="83496"/>
          <exon e_start="83731" e_stop="83926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCACACACCTCTGAGCTCACCGCTTCACCCAACTATATATAGAAACCCAATTCTGTAATCAACAAATGGAAGAGGAGAAAACTATGTTGATTGATGTGAATGAGAAAGAGATGAATGTTAATGGTGGAGTAGTAGTAGAGGTGAAAGAAGAACCAGTTATATTTATTAATGATGAAGATGACATTATTGGGGATTCAGTACCAAAGCCTTTGGATGGGTTGCGTGATGTAGGTCCACCTCCGTTTTTGAAGAAGACGTTTGAAATGGTGGATGATCCAAATACCGACTCTATAATCTCATGGAGTAACAGTCAAAACAGCTTTGTTGTTTGGGATCCTCACAAATTTTCAATTCATCTTCTACCTAAACATTTTAAGCACAACAACTTCTCTAGCTTTATCCGCCAGCTCAATACCTATGTAAGTTTGTACTTGATTTTCCTTAATTAATTAACCAATTTCTACTTCATTTTCACCATCTGCTTCTTCTAATTTTAATAGTAAACTCAATTCCTTTTGTGAAATTGTAATTTGGTTAATAATTGGGTTCTGAATTGGTTTGGTATATCTGACTTGTATCTCCATCCACTGTTTTTATGTTAGATTTATCTTTTGACTATTGTGGTATTTTTATTTTTTTTTGTGGATTTGTAGCGTTTCAGGAAAATTGATTCAGATAGATGGGAATTTGCAAATGAGGGTTTTCAGAAAGGGAAAAAGCATTTGCTGATAAATATCAAGAGAAGAAAGCAGTATCCTCAACTAGGAGGAGGAGGTGGTGGAGGAGCAAAATCTTGGGTAGGAGGTTGTTGCAAGGATGGAACTGAAGCAGCAGAGATAGAAAAGCTGA</genome_strand>
        <mrna_strand>TTTCCACACACCTCTGAGCTCACCGCTTCACCCAACTATATATAGAAACCCAATTCTGTAATCAACAAATGGAAGAGGAGAAAACTATGTTGATTGATGTGAATGAGAAAGAGATGAATGTTAATGGTGGAGTAGTAGTAGAGGTGAAAGAAGAACCAGTTATATTTATTAATGATGAAGATGACATTATTGGGGATTCAGTACCAAAGCCTTTGGATGGGTTGCGTGATGTAGGTCCACCTCCGTTTTTGAAGAAGACGTTTGAAATGGTGGATGATCCAAATACCGACTCTATAATCTCATGGAGTAACAGTCAAAACAGCTTTGTTGTTTGGGATCCTCACAAATTTTCAATTCATCTTCTACCTAAACATTTTAAGCACAACAACTTCTCTAGCTTTATCCGCCAGCTCAATACCTAT..........................................................................................................................................................................................................................................CGTTTCAGGAAAATTGATTCAGATAGATGGGAATTTGCAAATGAGGGTTTTCAGAAAGGGAAAAAGCATTTGCTGATAAATATCAAGAGAAGAAAGCAGTATCCTCAACTANGAGGAGGAGGTGGTGGAGGAGCAAAATCTTGGGTAGGAGGTTGTTGCAAGGATGGAACTGAAGCAGCAGAGATAGAAAAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E392002" ref_strand="-" ref_description="SGN-E392002 	[TUS-24-G24]">
      <seq>gaaggagaggttacagaatagtgagattaaacaaaagtatatggtgatcttcctggcgaaaacgttccacaaccctatgtttgttcaacatctgattgaaaaggtgaaacaggggaagacaacaacggttgagaatgggaccaagaagagaaggttgtgtagtgatgaaaatcaagaggagtacacaacaattaagtcggagatacaaacactcttctcttgtgatgaatcgtcgaatagtccagttgaggaacaaaaaggcaagggaaataacagcagcccggagatggtatttgagaactatatattgtgggagaagttgatggaggatgacatgatttgtgagaatggagcagaaacagataagtatcaaagtgagattgttcttgaactagaggatttgatctcgaacccatccgagtgcaagtgtatgccttaaatgagcgagagttaggatggtccaacagatagctagcttaagaaaatcacaatgaatgttttatcagttggtagtaactaacaatgtataaaggtttttacagaagatgaagaaaattaagtagtttgataggggtttggtgaagaggagaatattgtagaacaagaatatgaatgttagtttcatgcatagtattagtaaatataatatggtcttttcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="+" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="83709" stop="84968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84009" g_stop="84668" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="675"/>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="+" ref_id="SGN-E392002" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392002" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84009" e_stop="84668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAGAGGTTACAGAATAGTGAGATTAAACAAAAGTATATGGTGATCTTCCTGGCGAAAACGTTCCACAACCCTATGTTTGTTCAACATCTGATTGAAAAGGTGAAACAGGGGAAGACAACAACGGTTGAGAATGGGACCAAGAAGAGAAGGTTGTGTAGTGATGAAAATCAAGAGGAGTACACAACAATTAAGTCGGAGATACAAACACTCTTCTCTTGTGATGAATCGTCGAATAGTCCAGTTGAGGAACAAAAAGGCAAGGGAAATAACAGCAGCCCGGAGATGGTATCTGAGAACTATATATTGTGGGAGAAGTTGATGGAGGATGACATGATTTGTGAGAATGGAGCAGAAACAGATAAGTATCAAAGTGAGATTGTTCTTGAACTAGAGGATTTGATCTCGAACCCATCCGAGTGCAAGTGTATGCCTTAAATGAGCGAGAGTTAGGATGGTCCAACAGATAGCTAGCTTAAGAAAATCACAATGAATGTTTTATCAGTTGGTAGTAACTAACAATGTATAAAGGTTTTTACAGAAGATGAAGAAAATTAAGTAGTTTGATAGGGGTTTGGTGAAGAGGAGAATATTGTAGAACAAGAATATGAATGTTAGTTTCATGCATAGTATTAGTAAATATAATATGGTCTTTTCTT</genome_strand>
        <mrna_strand>GAAGGAGAGGTTACAGAATAGTGAGATTAAACAAAAGTATATGGTGATCTTCCTGGCGAAAACGTTCCACAACCCTATGTTTGTTCAACATCTGATTGAAAAGGTGAAACAGGGGAAGACAACAACGGTTGAGAATGGGACCAAGAAGAGAAGGTTGTGTAGTGATGAAAATCAAGAGGAGTACACAACAATTAAGTCGGAGATACAAACACTCTTCTCTTGTGATGAATCGTCGAATAGTCCAGTTGAGGAACAAAAAGGCAAGGGAAATAACAGCAGCCCGGAGATGGTATTTGAGAACTATATATTGTGGGAGAAGTTGATGGAGGATGACATGATTTGTGAGAATGGAGCAGAAACAGATAAGTATCAAAGTGAGATTGTTCTTGAACTAGAGGATTTGATCTCGAACCCATCCGAGTGCAAGTGTATGCCTTAAATGAGCGAGAGTTAGGATGGTCCAACAGATAGCTAGCTTAAGAAAATCACAATGAATGTTTTATCAGTTGGTAGTAACTAACAATGTATAAAGGTTTTTACAGAAGATGAAGAAAATTAAGTAGTTTGATAGGGGTTTGGTGAAGAGGAGAATATTGTAGAACAAGAATATGAATGTTAGTTTCATGCATAGTATTAGTAAATATAATATGGTCTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E236397" ref_strand="+" ref_description="SGN-E236397 	[cLED-13-K4]">
      <seq>atgaaactaacattcatattcttgttctacaatattctcctcttcaccaaacccctatcaaactacttaattttcttcatcttctgtaaaaacctttatacattgttagttactaccaactgataaaacattcattgtgattttcttaagctagctatctgttggaccatcctaactctcgctcatttaaggcatacacttgcactcggatgggttcgagatcaaatcctctagttcaagaacaatctcactttgatacttatctgtttctgctccattctcacaaatcatgtcatcctccatcaacttctcccacaatatatagttctcagataccatctccgggctgctgttatttcccttgcctttttgttcctcaactggactattcgacgattcatcacaagagaagagtgtttgtatctccgacttaattgttgtgtactcctcttgattttcatcactacacaaccttctcttcttggtcccattctcaaccgttgttgtcttcccctgtttcaccttttcaatcagatgttgaacaaacatagggttgtggaacgttttcgccaggaagatcaccatatactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="-" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="84933" stop="83741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84633" g_stop="84041" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="-" ref_id="SGN-E236397" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84633" e_stop="84041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAACTAACATTCATATTCTTGTTCTACAATATTCTCCTCTTCACCAAACCCCTATCAAACTACTTAATTTTCTTCATCTTCTGTAAAAACCTTTATACATTGTTAGTTACTACCAACTGATAAAACATTCATTGTGATTTTCTTAAGCTAGCTATCTGTTGGACCATCCTAACTCTCGCTCATTTAAGGCATACACTTGCACTCGGATGGGTTCGAGATCAAATCCTCTAGTTCAAGAACAATCTCACTTTGATACTTATCTGTTTCTGCTCCATTCTCACAAATCATGTCATCCTCCATCAACTTCTCCCACAATATATAGTTCTCAGATACCATCTCCGGGCTGCTGTTATTTCCCTTGCCTTTTTGTTCCTCAACTGGACTATTCGACGATTCATCACAAGAGAAGAGTGTTTGTATCTCCGACTTAATTGTTGTGTACTCCTCTTGATTTTCATCACTACACAACCTTCTCTTCTTGGTCCCATTCTCAACCGTTGTTGTCTTCCCCTGTTTCACCTTTTCAATCAGATGTTGAACAAACATAGGGTTGTGGAACGTTTTCGCCAGGAAGATCACCATATACTTTT</genome_strand>
        <mrna_strand>ATGAAACTAACATTCATATTCTTGTTCTACAATATTCTCCTCTTCACCAAACCCCTATCAAACTACTTAATTTTCTTCATCTTCTGTAAAAACCTTTATACATTGTTAGTTACTACCAACTGATAAAACATTCATTGTGATTTTCTTAAGCTAGCTATCTGTTGGACCATCCTAACTCTCGCTCATTTAAGGCATACACTTGCACTCGGATGGGTTCGAGATCAAATCCTCTAGTTCAAGAACAATCTCACTTTGATACTTATCTGTTTCTGCTCCATTCTCACAAATCATGTCATCCTCCATCAACTTCTCCCACAATATATAGTTCTCAGATACCATCTCCGGGCTGCTGTTATTTCCCTTGCCTTTTTGTTCCTCAACTGGACTATTCGACGATTCATCACAAGAGAAGAGTGTTTGTATCTCCGACTTAATTGTTGTGTACTCCTCTTGATTTTCATCACTACACAACCTTCTCTTCTTGGTCCCATTCTCAACCGTTGTTGTCTTCCCCTGTTTCACCTTTTCAATCAGATGTTGAACAAACATAGGGTTGTGGAACGTTTTCGCCAGGAAGATCACCATATACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E231436" ref_strand="+" ref_description="SGN-E231436 	[cLED-4-I15]">
      <seq>atgaaactaacattcatattcttgttctacaatattctcctcttcaccaaacccctatcaaactacttaattttcttcatcttctgtaaaaacctttatacattgttagttactaccaactgataaaacattcattgtgattttcttaagctagctatctgttggaccatcctaactctcgctcatttaaggcatacacttgcactcggatgggttcgagatcaaatcctctagttcaagaacaatctcactttgatacttatctgtttctgctccattctcacaaatcatgtcatcctccatcaacttctcccacaatatatagttctcagataccatctccgggctgctgttatttcccttgcctttttgttcctcaactggactattcgacgattcatcacaagagaagagtgtttgtatctccgacttaattgttgtgtactcctcttgattttcatcactacacaaccttctcttcttggtcccattctcaaccgttgttgtcttcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="-" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="84933" stop="83819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84633" g_stop="84119" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="-" ref_id="SGN-E231436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84633" e_stop="84119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAACTAACATTCATATTCTTGTTCTACAATATTCTCCTCTTCACCAAACCCCTATCAAACTACTTAATTTTCTTCATCTTCTGTAAAAACCTTTATACATTGTTAGTTACTACCAACTGATAAAACATTCATTGTGATTTTCTTAAGCTAGCTATCTGTTGGACCATCCTAACTCTCGCTCATTTAAGGCATACACTTGCACTCGGATGGGTTCGAGATCAAATCCTCTAGTTCAAGAACAATCTCACTTTGATACTTATCTGTTTCTGCTCCATTCTCACAAATCATGTCATCCTCCATCAACTTCTCCCACAATATATAGTTCTCAGATACCATCTCCGGGCTGCTGTTATTTCCCTTGCCTTTTTGTTCCTCAACTGGACTATTCGACGATTCATCACAAGAGAAGAGTGTTTGTATCTCCGACTTAATTGTTGTGTACTCCTCTTGATTTTCATCACTACACAACCTTCTCTTCTTGGTCCCATTCTCAACCGTTGTTGTCTTCCCCT</genome_strand>
        <mrna_strand>ATGAAACTAACATTCATATTCTTGTTCTACAATATTCTCCTCTTCACCAAACCCCTATCAAACTACTTAATTTTCTTCATCTTCTGTAAAAACCTTTATACATTGTTAGTTACTACCAACTGATAAAACATTCATTGTGATTTTCTTAAGCTAGCTATCTGTTGGACCATCCTAACTCTCGCTCATTTAAGGCATACACTTGCACTCGGATGGGTTCGAGATCAAATCCTCTAGTTCAAGAACAATCTCACTTTGATACTTATCTGTTTCTGCTCCATTCTCACAAATCATGTCATCCTCCATCAACTTCTCCCACAATATATAGTTCTCAGATACCATCTCCGGGCTGCTGTTATTTCCCTTGCCTTTTTGTTCCTCAACTGGACTATTCGACGATTCATCACAAGAGAAGAGTGTTTGTATCTCCGACTTAATTGTTGTGTACTCCTCTTGATTTTCATCACTACACAACCTTCTCTTCTTGGTCCCATTCTCAACCGTTGTTGTCTTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E241456" ref_strand="+" ref_description="SGN-E241456 	[cLED-28-G21]">
      <seq>atgaaactaacattcatattcttgttctacaatattctcctgttcaccaaacccctatcaaactacttaattttcttcatcttctgtaaaaacctttatacattggtagttactaccaactgataaaacattcattgcgattttcttaagctagctatctgatggaccatcctaactctcgctcatttaaggcatacacttgcactcggatgggttcgagatcaaatcctctagttcaagaacaatctcactttgatacttatctgtttgtgctccattctcacaaagcatgtcattctccatcaacttctcccacaatatatagttctcagataccatctccgggctgctgttatttcccttgcctttttgttcctcaactggactattcgacgattcatcacaagagaagagtgtttgtatctccgactcaattgttgtgtactcctcttgattttcatcactacacaaccttctcttcttggtcccattctcaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="-" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="84933" stop="83835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84633" g_stop="84135" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="-" ref_id="SGN-E241456" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84633" e_stop="84135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAACTAACATTCATATTCTTGTTCTACAATATTCTCCTCTTCACCAAACCCCTATCAAACTACTTAATTTTCTTCATCTTCTGTAAAAACCTTTATACATTGTTAGTTACTACCAACTGATAAAACATTCATTGTGATTTTCTTAAGCTAGCTATCTGTTGGACCATCCTAACTCTCGCTCATTTAAGGCATACACTTGCACTCGGATGGGTTCGAGATCAAATCCTCTAGTTCAAGAACAATCTCACTTTGATACTTATCTGTTTCTGCTCCATTCTCACAAATCATGTCATCCTCCATCAACTTCTCCCACAATATATAGTTCTCAGATACCATCTCCGGGCTGCTGTTATTTCCCTTGCCTTTTTGTTCCTCAACTGGACTATTCGACGATTCATCACAAGAGAAGAGTGTTTGTATCTCCGACTTAATTGTTGTGTACTCCTCTTGATTTTCATCACTACACAACCTTCTCTTCTTGGTCCCATTCTCAACC</genome_strand>
        <mrna_strand>ATGAAACTAACATTCATATTCTTGTTCTACAATATTCTCCTGTTCACCAAACCCCTATCAAACTACTTAATTTTCTTCATCTTCTGTAAAAACCTTTATACATTGGTAGTTACTACCAACTGATAAAACATTCATTGCGATTTTCTTAAGCTAGCTATCTGATGGACCATCCTAACTCTCGCTCATTTAAGGCATACACTTGCACTCGGATGGGTTCGAGATCAAATCCTCTAGTTCAAGAACAATCTCACTTTGATACTTATCTGTTTGTGCTCCATTCTCACAAAGCATGTCATTCTCCATCAACTTCTCCCACAATATATAGTTCTCAGATACCATCTCCGGGCTGCTGTTATTTCCCTTGCCTTTTTGTTCCTCAACTGGACTATTCGACGATTCATCACAAGAGAAGAGTGTTTGTATCTCCGACTCAATTGTTGTGTACTCCTCTTGATTTTCATCACTACACAACCTTCTCTTCTTGGTCCCATTCTCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E238418" ref_strand="+" ref_description="SGN-E238418 	[cLED-17-N23]">
      <seq>atgaaactaacattcatattcttggtctacaatattctcctcttcaccaaacccctatcaaactacttaattttcttcatcttctgtaaaaacctttatacattgttagttactaccaactgataaaacattcattgtgattctcttaagctagctatctgttggaccatcctaactctcgctcatttaaggcatacacttgcactcggatgggttcgagatcaaatcctctagttcaagaacaatctcactttgatacttatctgtttctgctccattctcacaaatcatgtcatcctccatcaacttctcccacaatatatagttctcagataccatctccgggctgctgttatttcccttgcctttttgttcctcaactggactattcgacgattcatcacaagagaagagtgtttgtatctccgacttaattgttgtgtactcctcttgattttcatcactacacaaccttctcttcttggtcccattctcaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="-" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="84933" stop="83835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84633" g_stop="84135" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="-" ref_id="SGN-E238418" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84633" e_stop="84135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAACTAACATTCATATTCTTGTTCTACAATATTCTCCTCTTCACCAAACCCCTATCAAACTACTTAATTTTCTTCATCTTCTGTAAAAACCTTTATACATTGTTAGTTACTACCAACTGATAAAACATTCATTGTGATTTTCTTAAGCTAGCTATCTGTTGGACCATCCTAACTCTCGCTCATTTAAGGCATACACTTGCACTCGGATGGGTTCGAGATCAAATCCTCTAGTTCAAGAACAATCTCACTTTGATACTTATCTGTTTCTGCTCCATTCTCACAAATCATGTCATCCTCCATCAACTTCTCCCACAATATATAGTTCTCAGATACCATCTCCGGGCTGCTGTTATTTCCCTTGCCTTTTTGTTCCTCAACTGGACTATTCGACGATTCATCACAAGAGAAGAGTGTTTGTATCTCCGACTTAATTGTTGTGTACTCCTCTTGATTTTCATCACTACACAACCTTCTCTTCTTGGTCCCATTCTCAACC</genome_strand>
        <mrna_strand>ATGAAACTAACATTCATATTCTTGGTCTACAATATTCTCCTCTTCACCAAACCCCTATCAAACTACTTAATTTTCTTCATCTTCTGTAAAAACCTTTATACATTGTTAGTTACTACCAACTGATAAAACATTCATTGTGATTCTCTTAAGCTAGCTATCTGTTGGACCATCCTAACTCTCGCTCATTTAAGGCATACACTTGCACTCGGATGGGTTCGAGATCAAATCCTCTAGTTCAAGAACAATCTCACTTTGATACTTATCTGTTTCTGCTCCATTCTCACAAATCATGTCATCCTCCATCAACTTCTCCCACAATATATAGTTCTCAGATACCATCTCCGGGCTGCTGTTATTTCCCTTGCCTTTTTGTTCCTCAACTGGACTATTCGACGATTCATCACAAGAGAAGAGTGTTTGTATCTCCGACTTAATTGTTGTGTACTCCTCTTGATTTTCATCACTACACAACCTTCTCTTCTTGGTCCCATTCTCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E357308" ref_strand="+" ref_description="SGN-E357308 	[cTOS-23-C4]">
      <seq>tctagaactgtggaacttggaaaacggttctttccacgttgttcagaagttctaaataagatcatggatgctgatgacttgtctgagatagcttacatggggaatgatacagtagaagagcgtcaactgaagaagcaaaggtacatggaacttcaagaaattttgtctaaagcattcacggaggataaagaagaatttgctaagactaacatgtcctcatcttgttcctctacatctaagggagtagataagcccaataatctcccatttaggaaatagattttgtattaggacatatgaggaagaaacacaggactctctttctttttcatcatttgatgcatacaaaacacatgtaccataaacttgtattgtgaaaaaaagataaaatttcattattagttgagaagcaatcatttgaaagtgaaaaaaaacaaaatggcccacctagaagataagatatgtaacaattgttaatagtattattattattattattatgagttaaatgactaataattgtggattttgtggctctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="-" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="88034" stop="86902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87731" g_stop="87191" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="551" r_length="541" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="-" ref_id="SGN-E357308" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87731" e_stop="87191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACTTGGAAAACGGTTCTTTCCACGTTGTTCAGAAGTTCTAAATAAGATCATGGATGCTGATGACTTGTCTGAGATAGCTTACATGGGGAATGATACAGTAGAAGAGCGTCAACTGAAGAAGCAAAGGTACATGGAACTTCAAGAAATTTTGTCTAAAGCATTCACGGAGGATAAAGAAGAATTTGCTAAGACTAACATGTCCTCATCTTGTTCCTCTACATCTAAGGGAGTAGATAAGCCCAATAATCTCCCATTTAGGAAATAGATTTTGTATTAGGACATATGAGGAAGAAACACAGGACTCTCTTTCTTTTTCATCATTTGATGCATACAAAACACATGTACCATAAACTTGTATTGTGAAAAAAAGATAAAATTTCATTATTAGTTGAGAAGCAATCATTTGAAAGTGAAAAAAAACAAAATGGCCCACCTAGAAGATAAGATATGTAACAATTGTTAATAGTATTATTATTATTATTATTATGAGTTAAATGACTAATAATTGTGGATTTTGTGGCTCTAACTTAAGCTACC</genome_strand>
        <mrna_strand>TGGAACTTGGAAAACGGTTCTTTCCACGTTGTTCAGAAGTTCTAAATAAGATCATGGATGCTGATGACTTGTCTGAGATAGCTTACATGGGGAATGATACAGTAGAAGAGCGTCAACTGAAGAAGCAAAGGTACATGGAACTTCAAGAAATTTTGTCTAAAGCATTCACGGAGGATAAAGAAGAATTTGCTAAGACTAACATGTCCTCATCTTGTTCCTCTACATCTAAGGGAGTAGATAAGCCCAATAATCTCCCATTTAGGAAATAGATTTTGTATTAGGACATATGAGGAAGAAACACAGGACTCTCTTTCTTTTTCATCATTTGATGCATACAAAACACATGTACCATAAACTTGTATTGTGAAAAAAAGATAAAATTTCATTATTAGTTGAGAAGCAATCATTTGAAAGTGAAAAAAAACAAAATGGCCCACCTAGAAGATAAGATATGTAACAATTGTTAATAGTATTATTATTATTATTATTATGAGTTAAATGACTAATAATTGTGGATTTTGTGGCTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E342574" ref_strand="+" ref_description="SGN-E342574 	[cTOF-7-K1]">
      <seq>atttgcgtatgaagctgttataccttgaaaatagagttggtctggctaaactcctttttcccatggaagcaaaagttgcaatggacattgcacaagttgatggcacgtctgaattacccctggctagcatgaggaagaagatagctgatgcacagaggacaacagtggatttgaacgaggctcctttcaagatgaaagaggagcacttgaatcggcttagggctctctctagaactgtggaacttggaaaacggttctttccacgttgttcagaagttctaaataagatcatggatgctgatgacttgtctgagatagcttacatggggaacgatacagtagaagagcgtcaactgaagaagcaaaggtacatggaacttcaagaaattttgtctaaagcattcacggaggataaagaagaatttgctaagactaacatgtcctcatcttgttcctctacatctaagggagtagataagcccaataatctcccatttaggaaatagattntgtattaggacatatgangaaagaacacaggactctctttctttttcatcatttgatgcatacaaaacacatgtaccataaacttgtattgtgaaaaaaagataaaatttcattatttagtgagaaagcatcatttgaaagtgaaaaaaaacaaaatggcccacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="-" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92401" stop="86993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92101" g_stop="92066" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92065" i_stop="88340" i_length="3726">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.456" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88339" g_stop="88139" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="237" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88138" i_stop="87732" i_length="407">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87731" g_stop="87293" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="676" r_length="439" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="-" ref_id="SGN-E342574" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92101" e_stop="92066"/>
          <exon e_start="88339" e_stop="88139"/>
          <exon e_start="87731" e_stop="87293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCGTATGAAGCTGTTATACCTTGAAAATAGAGGTAGGATGTCATGTTTCTGCTTACTTCTCTTATTGTTATACTCTTGTTTCTTAAGATCCAGGCCATTGTATATGATCTTCCACTTAGTTTGCTCCTGCTCCTCTTCTGACAGCCTATCATGAGAATTTCATATTTAATAACCAGTCTTATTCGCTATGGAAGTTTTAAGTGATATTTTGATGTCTAATGGAGAACAAATCGAGGATGAGTTATACTATTATGTAATGACACATGGAGGATAACATATACTGTAGTGTCATAACATATGAAGGATGAGATGCTATAGTTTAATATTTCTCAATTACCCTATAAAATTCTTCATATAGTATGCAGGGGATGGGCGGAAACTGAAATAAACTCAAAGATATGCTTTTCTTAATCTAGAAGTAGCGTAGGATACATATCATGTTGCATGCAATCCACGATTGCGAGGTCAGTACCTATGAATCGGGGTGGTTCCTTTGTTTGATAATCTTCATCCTCTATACTCTCTCACTCTAGCTTTAGACATTTATCCATGTCACTGATAGTGCTCTTAAGGCTTAAGTCTATTTCAAGCAGCCTCTTCAGTCCAAGGACTGGGGAGGTAATGTTATGTTAAAAGTGCAGCTAATTTACCCCCACCTGCTTCAACTCCATTCTGGTATTAGGAGTGACCTTATATCCATCCATTTTTTTCTTCTTTCTTTAATTTGATTTCGGGTGACCTTATGTCTCTCTTTTACCCCTCATATGTAATAGATCTCCCAGTTTGCTATAAATTCATTTGTGATCTCGTGATGAAGAACTTTTTGCTCTCTATGTTGCATTACTCACACTCCCATCTTTTATGATTCCTAAGCCCATTCTGATGATTATCCTGATACGTTGGGATGGGTCTCTTTAATTTGCTTCCCTATATGAAGTTATTGTTAAGGACATTCTGTTTCTGTTTATTGTCCATACTTAATTTAGAAGAAATATTTGTTTCAGCTTATTGTCCATCCAACTCTCTTCGAGAATAGCATTTGTCACTGTATCATGCCCTTTCCTTCCTAGTATGCCCAAACATCCATCTCAGCGTCCTCTTCTTCACAACTTTCATCTTCTAATCGCGGGAGTCCTTGATTGGTCGACCCTCCGGCCCATACAACATAGTCGGTCTAACCACTGCTCTATAGAATTTGCCTGTACTTCCTTATCAGACAAGACTTCGGATGCAATCCTCCAGTTCATTCACCTTGCACTAATGCGATGTGTGACATCACTGTCAATCTCCCCATTTCCTCTGGATAATAAACCAAGATACTTGAAACTTCCTCTCTTTTGAATGACATGTGTATCAAGATTCACTTCCATGCCAGCCTCATGCATTACGTCATTGAACTTGCAATCCCAGTATCCTGTCTTGGTTCTGCTCAGTTTGAACCCTTTAGACTCCAAGGTGTGCCTCCAAACCTCCAACTTAGCGTAAACTCCATTCTGCGTCCCGTTAATCAGAAATGTCATCTGCAAATAGCATATGACATGACACCTCTCCTTGGATATGCCAATATTAATTCATCCATCATTAACACAAACAAGAACGGGCTAAGGGATGATCTCTAATGCAACCCCATCACACTAGGGAAATGCTCTGGGTCACCTCCTGTCGTCCTTACTTCGGTTTTGTCTCTATTACATGTCTTTGATTGCCTTAGTGCACGCCACAAGTACACCTTTAGCCTCCAAGCATCTCCACTATGTTTGAAGGTAAAATAAATTAATCTTTTTAAAGCAAAAATAGGTGATACATTTGTCAGGAAATTTTAAAGGTGCCATATGGTCTTCTCATAGTTTTAGATTTGTGACGCATGATATCCTTGACATTTTGTGATATATACAAAAATTGCTCAAGGTTAAGGCCTGAAGTGCAAGGTTATTTTTTCCTTCTAAACTAAGATAATTGCTAAAATAAGAAAAAGCAGCCGATTCACTTTCCCTTCCTTATCCTTTACTTCTTTTTATCCTTCTTTCAACAACAATGTAATCCCACAAGTGCGGTCTGGGGAGTGTAGAATGTATGCAAACCTTACGCTTGTAATTTGATATTTGTCAGAAATGAGATAATATTTTACTTAAGAACTTGTTACTTCAACTATTCTAACTTTCGCATTCTAATACTAACATTAAGCATTCTGATGCACCCCACAAACTAAAAATTGAGACCAAAATGAACTTACCAATTTTAAGACAACAACAACATACCCAATGAAATCCCTCTAGGTGGTGTCTGGGGGGCAGAATGTATGCAGACCTTACCACTACCTCATGGAGGTAGAGAGTCTATTTCTGAAAGATAAATAATGTATCTTAAAACAGAGAAAAATAAATAGTTGTTCGATAATTGTTGGAGTAGTAGCCGTCTTGTATTCATGAACTGTTTATTAAGCAATGCATCTTTGTCTATCTCATAGACACATGGTATTAGAGCTTGTACGATATCTTAATGCAGACACATGGCCTTATGATGCAAATCCAGCCAAAGTTTCTTTTACTTTTCATAACTTTACTGTTCTGGCCCTTCTGAACAGCCTCTTTAGCAGTATTACTTTTGGACCATTTGAGCACCCAACATGCATTTTAAATGACCCTTTGGTAGTATTGCACTCCTTTCATTGGTTGTTAAGATAGCATAATGTTTCTTTTTAATGACCTGCCTATTTTTGCTGATTGGGCCGATGTCATGTGCTTAAGAGAGTTGTAGGATTCGTAAAACAGGAGAAGAGCATCTCAAAGTATGGGGCAAAGGATGTCGCGTTTTGACTTTCTGGTGATTGTTCTGCTGGGTTACCTATTTCGATGGCGCTCCCTCTTTCTGGTCATTTTTCATCAAATTCAATCAGATCTCCTGATTCTTGTGATTGTTTGATATGTTTTATTAAGCTTTGATACCCTGCGCGAAATAGAGAGAAAATGTAATGTCTTGATGATATGGTAAATACAAGACACCTATTTGTAGGTGTCAGGTAGATTAAACATGATATTTGTCCTATGTGAAATGATATCTAATTTAGGAACTTTTACATTCTAAAAGTCAACACCACACTCTTCACTGTTAGTTTCTGTTACTTCTTCATTGTTATCTTCTTCTTTCTCTTCCATACCTATGAAACATAAAGAAGAGCAGATAAATGAAATTTACTTCCTCTTTAGTTCTCCTTTCAGGGTTTATCATTTCCTAATTTCTGTTGCATTAATCATATTTTTAAATGAAGGGGGGTTATCTTAGTCCTGGGGAAAGGGGGGTTGCAGGGATAATAGTTTGGAACCTTTATTGCTTGGACTCTCCAAAATTATTGTTGCACCCATGTCAAATCCCTTCCAAAATGACTACTTTTGGAGGATCCGAAGAATCCAAGCAACATTATTTGGAACTAGCCCAACTTCATTTAAAATATGTTACTCACAAGTCACAATGCTACTAGTTTGGAAGGAAAACTTAACAGTTTCACTCCGACCTTATAAAGGATATTCTTAATGTTTGCGGAAGGGGTGCTGCTTATGTTTGATACACTTAAATTAGACTTATTTTTCCTTGTTTTTTTAAAGGAAATGTTCTTTCATTTCCAAAGGAGGTCACAAAGTTGTCCTATTGATTGGTGGATGGTCATATGCCATTTGATTATGGTTAATGAACTATTTGTATTAGTGAAAAGGAAATAGTAAACCATTATGCTGAAGATTGACTAGTTGATTGTCTTTCAGTTGGTCTGGCTAAACTCCTTTTTCCCATGGAAGCAAAAGTTGCAATGGACATTGCACAAGTTGATGGCACGTCTGAATTACCCCTGGCTAGCATGAGGAAGAAGATAGCTGATGCACAGAGGACAACAGTGGATTTGAACGAGGCTCCTTTCAAGATGAAAGAGGAGCACTTGAATCGGCTTAGGGCTCTCTCTAGAACTGGTAAAGATATCTTCAGCTACATCTTACACCAAATCCTTATTCTTTATGTCTCTCGTTTTTTCTATATTGATCTGTGTACTGTTAGCATATGAAATATGAGCCTTTTCTGATTTTTATTATATTTGATTCTTTTCTTTTTACTGGGGGGTGAAGTGTGGCAGGAGGGGTATAAGAAAGCCATATTCTCCCTGTATGAGAGATATAAATGGACTAGAGCAATTTCAGGGTCAAAATTTTCTCTTCAGTGCTATTGTGTACTGACTGTAGTAAAACAAAGTCACTTTATTCTTCCCCCATCTCCTCCACCAAACTTTTTTTTTTTTTGGTACATAAAACATTTGGATTTCTGAATGTTGTGCTTTAAAGTCCTTCATGAGATACGATTATAATGCATTGTAAACTTGCAGTGGAACTTGGAAAACGGTTCTTTCCACGTTGTTCAGAAGTTCTAAATAAGATCATGGATGCTGATGACTTGTCTGAGATAGCTTACATGGGGAATGATACAGTAGAAGAGCGTCAACTGAAGAAGCAAAGGTACATGGAACTTCAAGAAATTTTGTCTAAAGCATTCACGGAGGATAAAGAAGAATTTGCTAAGACTAACATGTCCTCATCTTGTTCCTCTACATCTAAGGGAGTAGATAAGCCCAATAATCTCCCATTTAGGAAATAGATTTTGTATTAGGACATATGAGGAAGAAACACAGGACTCTCTTTCTTTTTCATCATTTGATGCATACAAAACACATGTACCATAAACTTGTATTGTGAAAAAAAGATAAAATTTCATTATTAGTTGAGAAGCAATCATTTGAAAGTGAAAAAAAACAAAATGGCCCACCT</genome_strand>
        <mrna_strand>ATTTGCGTATGAAGCTGTTATACCTTGAAAATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTCTGGCTAAACTCCTTTTTCCCATGGAAGCAAAAGTTGCAATGGACATTGCACAAGTTGATGGCACGTCTGAATTACCCCTGGCTAGCATGAGGAAGAAGATAGCTGATGCACAGAGGACAACAGTGGATTTGAACGAGGCTCCTTTCAAGATGAAAGAGGAGCACTTGAATCGGCTTAGGGCTCTCTCTAGAACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACTTGGAAAACGGTTCTTTCCACGTTGTTCAGAAGTTCTAAATAAGATCATGGATGCTGATGACTTGTCTGAGATAGCTTACATGGGGAACGATACAGTAGAAGAGCGTCAACTGAAGAAGCAAAGGTACATGGAACTTCAAGAAATTTTGTCTAAAGCATTCACGGAGGATAAAGAAGAATTTGCTAAGACTAACATGTCCTCATCTTGTTCCTCTACATCTAAGGGAGTAGATAAGCCCAATAATCTCCCATTTAGGAAATAGATTNTGTATTAGGACATATGANGAAAGAACACAGGACTCTCTTTCTTTTTCATCATTTGATGCATACAAAACACATGTACCATAAACTTGTATTGTGAAAAAAAGATAAAATTTCATTATTTAGTGAGAAAGCATCATTTGAAAGTGAAAAAAAACAAAATGGCCCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E251135" ref_strand="+" ref_description="SGN-E251135 	[cLEG-10-A24]">
      <seq>gaatcggaaacttcactggcagacgtcaattccctcaaacgtctatcagaaacactagagtctatcttcgatgcgtctgcgccggatttcgacttcttcgctgatgctaagcttctggctccaggcggtaaggaaattccggtgcatcggtgcattttgtcggcgaggagtcctttttttaagaatgtattctgtgggaaagatagcaacacgaagctggaactcaaagagctgatgaaagagtatgaggtgagttttgatgccgtggtcagtgtgctcgcctatttgtatagtggaaaagttaggcctgcatctaaagatgtgtgtgtttgtgtggacaatgagtgcttgcatgtagcttgtaggccagctgtggccttcatggttcaagttttgtacgcatcctttacctttcagatctctcaattggtcgacaagtttcagagacacctattggatattcttgacaaagctgtancaaatgatgtaatgatggttttatccgttgcaaacatttgcggtaaagcatgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="-" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="102713" stop="92424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102413" g_stop="101970" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101969" i_stop="92814" i_length="9156">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92813" g_stop="92724" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="534" r_length="90" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="-" ref_id="SGN-E251135" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102413" e_stop="101970"/>
          <exon e_start="92813" e_stop="92724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCGGAAACTTCACTGGCAGACGTCAATTCCCTCAAACGTCTATCAGAAACACTAGAGTCTATCTTCGATGCGTCTGCGCCGGATTTCGACTTCTTCGCTGATGCTAAGCTTCTGGCTCCAGGCGGTAAGGAAATTCCGGTGCATCGGTGCATTTTGTCGGCGAGGAGTCCTTTTTTTAAGAATGTATTCTGTGGGAAAGATAGCAACACGAAGCTGGAACTCAAAGAGCTGATGAAAGAGTATGAGGTGAGTTTTGATGCCGTGGTCAGTGTGCTCGCCTATTTGTATAGTGGAAAAGTTAGGCCTGCATCTAAAGATGTGTGTGTTTGTGTGGACAATGAGTGCTTGCATGTAGCTTGTAGGCCAGCTGTGGCCTTCATGGTTCAGGTTTTGTACGCATCCTTTACCTTTCAGATCTCTCAATTGGTCGACAAGTTTCAGGTGAACTGTCAAAAACCCTACAATATCAATTGTTCTTCTTGTTAATAGAATTGCAACTTTATAAGTTAGTCAGCTGTATTACTAATGCCCTCAACTTAATGTCCTTGCAAAATCTTTCTTGATTTACTTATGTTTGCCTTTATTTTTCTGAGTGAAATAGTGAGAATTTATTAAGTTGCTTATGGAATTTTGAGTATCTCTGAGAGTCACTTGTGAGCATGTTTTAATTTTAAATAATTGGTATGATCTAAATGTGCCCTTTTTTTCTTGTACTTCATTCTTAGTTAAGTCCACTTGCTTTTGAGATATTTTAGGACTTTTTTCGACTACTTCATTTCATGTAATTTCAGGTTCACTCCATTCTGGTTTTAACTTCTATAATTATCATAGTGTCACATTTATGACTTGAGCATTTGGAGGTCTATGTAGGAAATGATCAAACCTACTCAAGTGATGTCTCACAACTTTCCCTTCATGTGGGTACTCATGATCCTTGCCAGAAAATATTGAGAGTCTAGATACTGCAAAAGTATAGCTTTATTCATTGCGTTTGTACAATATTTATAAGAGAACAAGTTAGCTCAAATAAATTAATCAATTCTTAATTATTAGGAATTCTTGAATCAAAGGATTTCCTCTTAACTATTTTCCTAGAATAATATATTCAATTCCATATTTACAAGAGCAGATTATAACCAAATCTGCCAGCTTATTTGTGGAGCAAATTACAATCAAATCTGTTAGCTCATTGATGGACCAGATTGTGACTAAATCTGCCTATATATTCGACACTACCCCGCAAGTTGGCATGTAAATACTGAACATGCCTAACTTGCTCACAAGGACTCAAAAATAGTCCTGAAAAGACCTTTTGTGAAAATAACTGCAACTATGTCCACTTCAACATGCTTTATTGTCCGCCTTCATTTTCACAATACTACTTCAATGGAAAACTCATATGCCTTCTTAGTTCTTCCAAAAATCTCACGAGCCACAACATTTCACAAATTTTGTGTGTCATGGATCGATACTCAGCCTCAACACTACTTCGAGCTGCCACATTTTGATTCATACTTCTCCATGCCACTAAATTTCCCCAAACAAAGGTACAATATCCAGACGTAGACCTTCTATCAATAAATGAACCAACCCAATCTACATTCGTATAAGCCTCAATACTTCCTTGCTCATTCTTTTTAAATAACAATCCTTTTCAGGAGAGCTCTATAGATACCTTAAGATTCGATACACATCTTCTTGCTGTTCTTCTCCTGGAGCATGCATGAACTGACTTACTAGTCTCAGATCAAAGGAAATATCGGGTCTAGTATGTGACAAGTAAATAAACTTACCCTACCAATCTCTGATCTGACCCCTATCAATCAATTTTCCTTCCTTTACGAACTTTAGATTTAGATCAATTGGAGTTTTAGTTGGTCTACAACCACTCATTCTTGTTTCTTTTAGCAGATCAAGAACATACTTCCTTTGTTACACTATAATATTCCTTTATTTGATTTGTGCAACTTTCATGCCGAGAAAGTACTTTAGCAGGCCGAAGTCCTGTATCAAAGAATCTGAGCCAAGATGTTCATATATATATATATATACACACACACACACACACACACATCATCTTCTTTGAGGAATATATCATTGACATACACTAGAAGAATTGTTGTTTTTTGTTCTAGTGAATGTCAAGTAAACATTGTGTGATATGCTTGTCCTTGCACATATCCTTGCTTCTTCACAATTGAGTAAATTTTTCGAACAAAGTCCTTTGAGATAATTTTAGACTATAAAGAGATCTTCTAAGCTTGCATATCTTTGACTTGTACTTCCCTTCAAAAGTTTGAAGAGGGGTCCATATAGACTTCTTCCTCTAGGTACTTTTTAAGAAAGCATTCTTCACATCCAACTATTGAAGAGACCTGTCAAGATTTACTACGATTGTCAACTAAACTCTAATTGAGTTTAGCATAGCTACTGGAGCAAACTTCTCAAGATAGTCAATGACATATGTTTGCGTGAATCCCTTAGCTACTAGGCAAGCCTTATACCTTGCTAAGGATCTATTCGATTTGAATTTGGTGGTGAACACCCATTTACAACCACGAACTCCCACGTCTTTTTTTTTTCAAGAGCTCAAAATTCCTCCAAAATAGCCTCCTTATGGCTTCCACTCGGGAACTCGTAGGGCATCCTGCACATTTTTTGGAATCTCCACACTAGAAAGTTGTGAAGTAAGGGCTGAATAACTAGGAGACAACTTTTTATTGGACAATAACATAGAAACAAAATAATTAGGAGCATTTCTAACACCTTGTGTTTTTCTATAGGTTGGTCCAGATCTGAGGAGTTAGAAATAGAATTGATTGGAAGATTACCTGAATACCAATAAGGTCTTGCGGAACTGACTTTTGGTAGTGTTGAAAATCTCCAATCTTTTTTCCTTGAGTTCAGTTCCTTTTCGAGTACACCTATATTTCTTTTGTTGTTCTTTATTCCCCATTTTTATTTTTCATTTGAAGGCTCTACAAGTTCAATTTATGAGTTCTTATCATTTAAGTGACTTAGGTCCCTACCATCTCTTGGATCACACTTATTTATATCTTTTCCTAGACCCCTCACATCAGAATTTTTTGTAATATCAGGCTCCTCATTTGCCTGATTTCTAGTTTCCTCAATATCACAAAAAGATGAATCTTCACCTATATGATGCTCCCCCTAAAGACGAGTGATAAAATAAAGTTGGGACTCAAAGAAAGTTGGATCCATTGTGACAGTTATCTTCTTAGCCTGTGGAACATAACACTTACATCCCTTTGAACTTGGGGCATATCCTACAAAAACACACTTCTTAGCCCGCGGTCAAGTTCACTACGATTATGAACATGAAAAAATGTTGTTCAATCAAAATCTTCAGAGGCAGATCTCTAGTTAACCTAGAACTAGGAAAACTCTCTCAGATAACTTTGGAAGGTGTTTTAAATTCAAGAGGAAGAGATGACATCCTATTAATAAGGTAAGTGTTATGGTCCCTTGTTAAGGATATAGTTACCAGACGTTGCAAGATAAAATTTGAGGTTTTTGTTTTTCTACCTATGGCGCTGGTTCGTTAGAGAGAACCTACAATCTCTTGAGTTTGAAGTACTCAAAGACTTAGAAATTTTCTACTTATCATTCCACTGAATACAAACAACACTAAATACAACACTAGTGGATAACCACCCATCTAAAAACAAGGTAGTAACTTCCTTGAAATGAAAAAGTGGAGGAACTGAAAACAAGGAAGTAACCACCCATCTAAAAAACAAGGAAGCAACTTCCTACTATAACTGAAAGAGATAAGTGTCAAAAACACACCTAAACTATTCATTTTTTTTGAGTTTCATACCTAAACTATTGGAAGTGTGAGTTTCATACCTAAACTATCACTTTCAATAGTTTAGGTATGAAACTCAAAAAATAAGAGGTATAGTTTAGGTGTGTATTTGACACTTATCTCTAACTGAAATGAAAAAGTGGAGGAGTAACCTCTTTACTGCAAAAATTGCTACATAAAAATAAGAAAAATAAATAACTAAAAAGCTGTAATAAGCTATTGTAAACACTGCTATACAGGAAAAAAAAACTTATAAGCTGAAGTAATCTAATTTCTAATTCCCTTAAATCTTCCATCTGTAAACCATTGGTGGACTAAAAAGGTGCTAACATTACTCCCCTCTTCAAATTGCGCTTGCCCACAAGCGCTAAGTACGGAAAGTGTAGTGTTTCCCTCTTTTCCAACAAATTTTTCCTCATCGTATTTAGAGTCAATCCAAAATAACTTCTTGCACGGATGACCTCGAGTGGATGGTTCATCACAGTTGAAATGATGTCTCTTAAGTCATCTTTCCTCCATTTCAGATCTGCTCTGTTTCTTCACAAATCTGACATGTTGTAGAGGTGAGAAATCTGCTGTTTTTGATTTGCAAGCATCCAACAGTTGCGAACAAATGGGTTGTTCCTTGCGTTATAAAGTCGGGATAAACTCATCGGCATAGCCAAATCTGGAGGATTATGCAACTCAACCTCAATTGCTATATAATCAGTACGACTGCTGATATAAAGTTCTATTTCTTGGGACTGCGTAAGTGTACCAGCCCGCAAAATTAATCGCTCAATTGTTTCTTGGTAATCTGCCATAGACGCGATCTGGCGCAGTTTAGCCAATTCTCCCAATTTCTGGCTTCTGATTGGTGGCCCAAAATGAAGATTACAATGACGTTTGAAGTCATCCCAACACAGTTGAGGCAGATCTGTCTCCAATTGAAAAAACCAAAGTTGTGCATTGCCCTCCAAATGAAAAGAAGCAAAGTTTAGTTGAACCTTTTCTTCTTCCAGAGTTAGTTGGTATCGAAAGAAGTGTTCACACCTGTTCAACCATCCCAAAGGGTCCTCTTGGCCCACTAAATCGTGGGGAAATCCAGTTTTGTATGTCGAGGAATGATGAAACTTCCACCTGTTTCTGATCCCAACCCTCCTGTCACTCTTTTTTTTACCCTTCCAACTCCAATTCTGACTGATATGTTTAGTTGAATCAGAATCGACCTTAGAATTCTCTAAATTCTTTGTGAGTGCATCCAAATGTCCAAATTGACATCACGTTCTTCGTGGAACAAGTTCACCAATTGTGCTAGTTGATGTTGAATTTGGTCTCCCATGACTCCCGTCTCTGATACCAAGTTGTCATGGTCCCTTGTTGAGGATATATTTCCGGGACGTTGCAAGATAAAATTTGAAGTTTTCTTTTTTCTACCTATGGCGCTGGTTCGTTAGAGAGAATCTGCAATCTCTTGAGTTTGAAGTACTCAAAGACTTAGTAATTTCTGCTTATCATTTCACTGAATGCAGACAACACTAAATACAACTCTAGTGGATAACCACCCATTTAAAAACAAGGAAGTAACTTCCTACTATAACTGAAATGAAAAAGCGGAGGAAAAACCTCCTTTCTGCAAAAACTGCTACATAAAAATAGGAAAAATAAATAACTAAAAAGCTGTAATAATCTACTGTAAACACTACTATACAGAAATAATAAAATTAATAACTTATTAGCTGAAGTAATCTACTTTCTACTTCCCTTTAATCTTCCATCTGTAAACCATTGGTGGACTAAATAGGTGCTAACAGTAAGTGGCAGTCAAGAAAGCCTTTCCCAAAGGTATTGTGGAACTTTACTGGTAAACATTAAAGCTCTCGTTACCTTTAAAAGCTGTCTATCCTCTCTTTTAGCAATACCATTTTGTTGAGGTGAATCCAAACAAGAGCTTTGGTGTTCTACCTCAGTTTTTCTTAAAAGAATTTGCTAAGTGTTCATTATAAAATTCACGACCTTTGGTCACTCTGAAAAATCTTGATTTTCTCATTAAATTGTGTTTCCACCATGACATAGAAAATCTTAAATACATTTTTATTGTTCCCTACACAAGGAGTGTAAGTAGAGAAAAAACAGGAACTTCAGTCATGTGGTCACTAGCTCCTAAATCTATGATCCAAGAATCTATTTGGTTGAATTGCACTAAAAAAAGCAGACGATACAATATCTGTTTCAGCAAAAAAGTAAGAAGGATTATAAGAATTTGGTGCATTTGGACGAAATTGTGGAGAATGAAGAAGTTTGTGCAGAATTTCTAGTTGTTCCCTTGTCCTTGTAAATGGAGACGTCTCTGGAGAAGGTTGCTGCCCCTGATCAAAATAGGTTTTTTGAATGGCCTGCTCACTTTGATATTGAAAGCCACGATTATCAACTCTCTTCTTCCAATTTAGTGGTTTCCCATAAATCTTCCAACATGTTTCACGGGCGTGCCAATGTTTTTTGCAATGATCTCACCATGACCTTTTGATTTTGTCATCTTTATTCTTCACTATTACAAGAGCTAAAAAGTCTATAGTAGGTTTTAGTTCAACATCTAAATCAAGTCTTGTCTTAACTTTCTTCCTAGTTTCCTCTCTCCTAATGGCAGAAAAAGTTTCACAAAGTGAGGGCAGAGGATATTTTCACAGGATTCGTGACCTTACCTCGTCAAACTCTCAGACCCAATTTAACGCTGCTAAAAATGGAAAACTCTCATTTTCTTCCCTTTTTTGCTTTCACTCTATTCACAGAACATTGTGATTCATCATTTTAACACCGGTCTAACTCCTTCCACAAAGACACCATTTCTTTATAATAAGCAGTGAATTCCTTCTCACTCTACTTAGCTTGCCATAGTTTAATTTTTAACTAAAAGTTAGCATGCTATAATTTAATTTTTAACTAAAATTTTTGAGAGGTATTTTCTACATTAGAATATGTCTCTCTAAGATTTACCGAAGGCTAGTTCATGGAATTTATTAACCAAGCAATCACGAGTGAATTCTCTAATCTCCAGGAGTTCATCTTTGGGTCTTCAACTCCCAGCTTTTACATCTCTCCGGTCAGATGTCTTATCTTTCCACGGCTATCGACTGCAAGCTTTACGGATTGTGCCCATTCTAGATAGTTCTTCCCATTAATGGATGAGAAATTGACTGGAAGGGCATGCGCGAAGCGCTGCCTCCTTGAGTCATCAGATTTTCTGTAGGAGCTTCCAGGGAAGAACTTTTGTCTTGTGTTGGAACTGTTGATGTTCCAGTAAGATGCTCTCCATGAAAGGATGGTTTGTCCATATGATATTAGGGGAAAAAGTCCCGCTATGATACCATGAAAGTTTGGATATGCAAAGTATATTTTTATTCATAGCGTTTGTACAGTATTTATAAGAGAACAAGATCGATCAAATAAACTAATCTACGCCTAATTCTTAGGAGATCCTTAAAAGAGATTTCAAACTACTTTCCTAGAATAATATATTCTATCCCATATTTATAGAGCAGATTATAATCAAATATTCTAGCTTATCTGTGGAGCAAATTGCAATCAATCTGCCAGCTCATTGATGGAGTAGATTATAACTAAATCTGTCAACTCATTGGACAATTATCATAATACTTTTGTCTAATCTTATATGATTACACATTTATCATACACCCTCATTTCTTTGACATTCATCTTCCCAGTGTGTTGAGCTTAAGAGGTCTGACTCTTAATTATATATAACACATTACTTGTCTCACAACTTCCTATAAAGCTTGGTTCCACTTTTTGGTATTTTCCTACCGCATGAAACTCAACAGTCCATTTGATTGTTCTATTTAATTTATATGTTATGTTTTCGAAATCATTTTCCTGGAAAATTAAGTCTAGATATCTGAAATGATCATTAGGCACCATTAAAACTCACATATAATCTTATTTGAGCATCATTCCTCTCAAACGGGACTAGATTTGCATTGCATATACCCTTTCTTCTACTTATTCTAAAACACTGACTATCGATATTTATTCTAAAATCTTACTATCTGAAGTGTTTCTTTGTGATTCCAACTTTTGATTTACTCATAACTTATTTAATCAACTAAAACAATATCATCTATGGCATGCATTATGAAATCTCATTCAATATGACATTTATTTGTTCATTTATAACTAGAATAAAGAAGTATTTTCTCACGGACAATCTGAGGTGTAAACACATAGATAAGAGAATTTCTTCACTCTCTCCTCCGACTATTCTTACACTTGTGAGTGCTGACTATTCTTACACTTGTGAGTGCTCCTTCACATATATCCTGTATGTCATTTATTTATTTGAAATTCATTCTTATCTTCTCAAGTACCCAACAAAGGCCTTCTTTTTGCACATTATCATATGTCTTTCTAAGTTGATAGATATGAATCATTATGTGGTGATATTCTCAGTAAATTTGTATCAATTTTCTTAGAAAAATTATAAGCTTCCTTTTTGCGTGTAATAAGTAAAAATTAGCTAAAACTAAATCACAACGGAAGACAAACTCTAGAGTATCTTCCTTTCTTTATCCCAAGTACCATAACCAAGTGGTCCTTGTCCTTGGTATACCCGCATGTCCATTCAGATCTTTCCTAATAAAGATCTATTGGCCATTTGAGATCCTTTTGACCATATGTTCTCAAAAGTGAGTTTTAGTTTTACCATCTCATTCCTTTTGCAGAGTGTGAACACTAATGGTGTTAATTGTCTTCCAGATTAGTTATTAGAGAAAACTACTATAAAAAATGACATTCCATCTTCATTAATAACAGGGTCGGTTTTAGATGGCCTTTTGTGGGAAAGAATTATGGATTGAATTGTTCTGTATGACAGCATTATTTCTTTATAGAAAAAACAGCCATGTGTGGTGAGGTACATCTACGACCGATAGCCAATTTGGCCAAGTTTCTGCAAAGCCGAAAGTGTTTTTTGTTAAAAGAGAAGTTCTTATTTTAGAGAATTGAGAGGTTTGACCAAGATTTTAGGAAAAAAGATAAGTGTATTTTGAGTAGTAGCCGGAGTTGTATTTTGAAAAGCTAAAAGACACTACTTTTCCCAAGAAGCATTTTTGGAACCATGGCCAAGCACAATTTTCTGATCTTATATTGGCAAAAATGGTTGTCACAATGATTAGCCAAACACAAAATGCTACTCTCCAAAAGTACTTTGTCGAGTCGAAAAGTTCTTCTGACAGAAACACTTCTCGACATAAGCAGATTTTTAGAAGTTTGGTCAAACAGGTTATGAATCTCCTTGTGTAAAATTGGGGAACATTATATCATTGCTCAGTTAAAATTAATAGAATTACCCTTCAGGGTGGCCCAGTGGTTTGAGCTTGGGACTTCCATGTCAGAGGTCTCATGTTCGAAACCTTTACCAGCGAAAGCAAGGGGTTTATCTTCTGGGTCGAGCTCGTCATACCAGGCTTGCCTCGGGTTACCTCTCCTATGTGGTTTGCAAGCTATTGCATAGGAGCGGGGTTTTTACCTTGTGCGGACTTAAAGAGTAGCGGCTGCGGATTTCCCTTGTCATAAAAAAAAAAGATCAATAGAAGCACACTTTGCAAAACCTTAGTCACTTTGTGATCATGCAATATATGTTATTGAAAAGTCAGTTTCTTGTGAAATTCCTTAGTTATCACTATTTATCATTTATTCATTACTTCACTACTAACTGTACTGGCGACTAATATATCTTTCCTAATGTCACATTACATGTTTCCCTCCTTTTGCAGAGACACCTATTGGATATTCTTGACAAAGCTGTAGCAGATGATGTAATGATGGTTTTATCCGTTGCAAACATTTGCGGTAAAGCATGTGAA</genome_strand>
        <mrna_strand>GAATCGGAAACTTCACTGGCAGACGTCAATTCCCTCAAACGTCTATCAGAAACACTAGAGTCTATCTTCGATGCGTCTGCGCCGGATTTCGACTTCTTCGCTGATGCTAAGCTTCTGGCTCCAGGCGGTAAGGAAATTCCGGTGCATCGGTGCATTTTGTCGGCGAGGAGTCCTTTTTTTAAGAATGTATTCTGTGGGAAAGATAGCAACACGAAGCTGGAACTCAAAGAGCTGATGAAAGAGTATGAGGTGAGTTTTGATGCCGTGGTCAGTGTGCTCGCCTATTTGTATAGTGGAAAAGTTAGGCCTGCATCTAAAGATGTGTGTGTTTGTGTGGACAATGAGTGCTTGCATGTAGCTTGTAGGCCAGCTGTGGCCTTCATGGTTCAAGTTTTGTACGCATCCTTTACCTTTCAGATCTCTCAATTGGTCGACAAGTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACCTATTGGATATTCTTGACAAAGCTGTANCAAATGATGTAATGATGGTTTTATCCGTTGCAAACATTTGCGGTAAAGCATGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E254407" ref_strand="+" ref_description="SGN-E254407 	[cLEG-27-M10]">
      <seq>aactagctaacaaccccttgttcaatttcttttctctccccaaatcaatggctctttcttccaaatgatccctctattccattccccctttctcccatgaacgtatgctctaatggatagtagaactgctttttcggattccaatgatattagtggaagcagtagtatatgctgcatgaacgaatcggaaacttcactggcagacgtcaattccctcaaacgtctatcagaaacactagagtctatcttcgatgcgtctgcgccggatttcgacttcttcgctgatgctaagcttctggctccaggcggtaaggaaattccggtgcatcggtgcattttgtcggcgaggagtcctttttttaagaatgtattctgtgggaaagatagcaacacgaagctggaactcaaagagctgatgaaagagtatgaggtgagttttgatgccgtggtcagtgtgctcgcctatttgtatagtggaaaagttaggcctgcatctaaagatgtgtgtgtttgtgtggacaatgagtgcttgcatgtagcttgtaggccagctgtggccttcatggttcaagttttgtacgcatcctttacctttcagatctctcaattggtcgacaagtttcagagacacctattggatattcttgacaaagctgtagcagatgatgtaatgatggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="-" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="102895" stop="92458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102595" g_stop="101970" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101969" i_stop="92814" i_length="9156">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92813" g_stop="92758" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="681" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="-" ref_id="SGN-E254407" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102595" e_stop="101970"/>
          <exon e_start="92813" e_stop="92758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAGCTAACAACCCCTTGTTCAATTTCTTTTCTCTCCCCAAATTCAATGGCTCTTTCTTCCAAATGATCCCTCTATTCCATTCCCCCTTTCTCCCATGAACGTATGCTCTAATGGATAGTAGAACTGCTTTTTCGGATTCCAATGATATTAGTGGAAGCAGTAGTATATGCTGCATGAACGAATCGGAAACTTCACTGGCAGACGTCAATTCCCTCAAACGTCTATCAGAAACACTAGAGTCTATCTTCGATGCGTCTGCGCCGGATTTCGACTTCTTCGCTGATGCTAAGCTTCTGGCTCCAGGCGGTAAGGAAATTCCGGTGCATCGGTGCATTTTGTCGGCGAGGAGTCCTTTTTTTAAGAATGTATTCTGTGGGAAAGATAGCAACACGAAGCTGGAACTCAAAGAGCTGATGAAAGAGTATGAGGTGAGTTTTGATGCCGTGGTCAGTGTGCTCGCCTATTTGTATAGTGGAAAAGTTAGGCCTGCATCTAAAGATGTGTGTGTTTGTGTGGACAATGAGTGCTTGCATGTAGCTTGTAGGCCAGCTGTGGCCTTCATGGTTCAGGTTTTGTACGCATCCTTTACCTTTCAGATCTCTCAATTGGTCGACAAGTTTCAGGTGAACTGTCAAAAACCCTACAATATCAATTGTTCTTCTTGTTAATAGAATTGCAACTTTATAAGTTAGTCAGCTGTATTACTAATGCCCTCAACTTAATGTCCTTGCAAAATCTTTCTTGATTTACTTATGTTTGCCTTTATTTTTCTGAGTGAAATAGTGAGAATTTATTAAGTTGCTTATGGAATTTTGAGTATCTCTGAGAGTCACTTGTGAGCATGTTTTAATTTTAAATAATTGGTATGATCTAAATGTGCCCTTTTTTTCTTGTACTTCATTCTTAGTTAAGTCCACTTGCTTTTGAGATATTTTAGGACTTTTTTCGACTACTTCATTTCATGTAATTTCAGGTTCACTCCATTCTGGTTTTAACTTCTATAATTATCATAGTGTCACATTTATGACTTGAGCATTTGGAGGTCTATGTAGGAAATGATCAAACCTACTCAAGTGATGTCTCACAACTTTCCCTTCATGTGGGTACTCATGATCCTTGCCAGAAAATATTGAGAGTCTAGATACTGCAAAAGTATAGCTTTATTCATTGCGTTTGTACAATATTTATAAGAGAACAAGTTAGCTCAAATAAATTAATCAATTCTTAATTATTAGGAATTCTTGAATCAAAGGATTTCCTCTTAACTATTTTCCTAGAATAATATATTCAATTCCATATTTACAAGAGCAGATTATAACCAAATCTGCCAGCTTATTTGTGGAGCAAATTACAATCAAATCTGTTAGCTCATTGATGGACCAGATTGTGACTAAATCTGCCTATATATTCGACACTACCCCGCAAGTTGGCATGTAAATACTGAACATGCCTAACTTGCTCACAAGGACTCAAAAATAGTCCTGAAAAGACCTTTTGTGAAAATAACTGCAACTATGTCCACTTCAACATGCTTTATTGTCCGCCTTCATTTTCACAATACTACTTCAATGGAAAACTCATATGCCTTCTTAGTTCTTCCAAAAATCTCACGAGCCACAACATTTCACAAATTTTGTGTGTCATGGATCGATACTCAGCCTCAACACTACTTCGAGCTGCCACATTTTGATTCATACTTCTCCATGCCACTAAATTTCCCCAAACAAAGGTACAATATCCAGACGTAGACCTTCTATCAATAAATGAACCAACCCAATCTACATTCGTATAAGCCTCAATACTTCCTTGCTCATTCTTTTTAAATAACAATCCTTTTCAGGAGAGCTCTATAGATACCTTAAGATTCGATACACATCTTCTTGCTGTTCTTCTCCTGGAGCATGCATGAACTGACTTACTAGTCTCAGATCAAAGGAAATATCGGGTCTAGTATGTGACAAGTAAATAAACTTACCCTACCAATCTCTGATCTGACCCCTATCAATCAATTTTCCTTCCTTTACGAACTTTAGATTTAGATCAATTGGAGTTTTAGTTGGTCTACAACCACTCATTCTTGTTTCTTTTAGCAGATCAAGAACATACTTCCTTTGTTACACTATAATATTCCTTTATTTGATTTGTGCAACTTTCATGCCGAGAAAGTACTTTAGCAGGCCGAAGTCCTGTATCAAAGAATCTGAGCCAAGATGTTCATATATATATATATATACACACACACACACACACACACATCATCTTCTTTGAGGAATATATCATTGACATACACTAGAAGAATTGTTGTTTTTTGTTCTAGTGAATGTCAAGTAAACATTGTGTGATATGCTTGTCCTTGCACATATCCTTGCTTCTTCACAATTGAGTAAATTTTTCGAACAAAGTCCTTTGAGATAATTTTAGACTATAAAGAGATCTTCTAAGCTTGCATATCTTTGACTTGTACTTCCCTTCAAAAGTTTGAAGAGGGGTCCATATAGACTTCTTCCTCTAGGTACTTTTTAAGAAAGCATTCTTCACATCCAACTATTGAAGAGACCTGTCAAGATTTACTACGATTGTCAACTAAACTCTAATTGAGTTTAGCATAGCTACTGGAGCAAACTTCTCAAGATAGTCAATGACATATGTTTGCGTGAATCCCTTAGCTACTAGGCAAGCCTTATACCTTGCTAAGGATCTATTCGATTTGAATTTGGTGGTGAACACCCATTTACAACCACGAACTCCCACGTCTTTTTTTTTTCAAGAGCTCAAAATTCCTCCAAAATAGCCTCCTTATGGCTTCCACTCGGGAACTCGTAGGGCATCCTGCACATTTTTTGGAATCTCCACACTAGAAAGTTGTGAAGTAAGGGCTGAATAACTAGGAGACAACTTTTTATTGGACAATAACATAGAAACAAAATAATTAGGAGCATTTCTAACACCTTGTGTTTTTCTATAGGTTGGTCCAGATCTGAGGAGTTAGAAATAGAATTGATTGGAAGATTACCTGAATACCAATAAGGTCTTGCGGAACTGACTTTTGGTAGTGTTGAAAATCTCCAATCTTTTTTCCTTGAGTTCAGTTCCTTTTCGAGTACACCTATATTTCTTTTGTTGTTCTTTATTCCCCATTTTTATTTTTCATTTGAAGGCTCTACAAGTTCAATTTATGAGTTCTTATCATTTAAGTGACTTAGGTCCCTACCATCTCTTGGATCACACTTATTTATATCTTTTCCTAGACCCCTCACATCAGAATTTTTTGTAATATCAGGCTCCTCATTTGCCTGATTTCTAGTTTCCTCAATATCACAAAAAGATGAATCTTCACCTATATGATGCTCCCCCTAAAGACGAGTGATAAAATAAAGTTGGGACTCAAAGAAAGTTGGATCCATTGTGACAGTTATCTTCTTAGCCTGTGGAACATAACACTTACATCCCTTTGAACTTGGGGCATATCCTACAAAAACACACTTCTTAGCCCGCGGTCAAGTTCACTACGATTATGAACATGAAAAAATGTTGTTCAATCAAAATCTTCAGAGGCAGATCTCTAGTTAACCTAGAACTAGGAAAACTCTCTCAGATAACTTTGGAAGGTGTTTTAAATTCAAGAGGAAGAGATGACATCCTATTAATAAGGTAAGTGTTATGGTCCCTTGTTAAGGATATAGTTACCAGACGTTGCAAGATAAAATTTGAGGTTTTTGTTTTTCTACCTATGGCGCTGGTTCGTTAGAGAGAACCTACAATCTCTTGAGTTTGAAGTACTCAAAGACTTAGAAATTTTCTACTTATCATTCCACTGAATACAAACAACACTAAATACAACACTAGTGGATAACCACCCATCTAAAAACAAGGTAGTAACTTCCTTGAAATGAAAAAGTGGAGGAACTGAAAACAAGGAAGTAACCACCCATCTAAAAAACAAGGAAGCAACTTCCTACTATAACTGAAAGAGATAAGTGTCAAAAACACACCTAAACTATTCATTTTTTTTGAGTTTCATACCTAAACTATTGGAAGTGTGAGTTTCATACCTAAACTATCACTTTCAATAGTTTAGGTATGAAACTCAAAAAATAAGAGGTATAGTTTAGGTGTGTATTTGACACTTATCTCTAACTGAAATGAAAAAGTGGAGGAGTAACCTCTTTACTGCAAAAATTGCTACATAAAAATAAGAAAAATAAATAACTAAAAAGCTGTAATAAGCTATTGTAAACACTGCTATACAGGAAAAAAAAACTTATAAGCTGAAGTAATCTAATTTCTAATTCCCTTAAATCTTCCATCTGTAAACCATTGGTGGACTAAAAAGGTGCTAACATTACTCCCCTCTTCAAATTGCGCTTGCCCACAAGCGCTAAGTACGGAAAGTGTAGTGTTTCCCTCTTTTCCAACAAATTTTTCCTCATCGTATTTAGAGTCAATCCAAAATAACTTCTTGCACGGATGACCTCGAGTGGATGGTTCATCACAGTTGAAATGATGTCTCTTAAGTCATCTTTCCTCCATTTCAGATCTGCTCTGTTTCTTCACAAATCTGACATGTTGTAGAGGTGAGAAATCTGCTGTTTTTGATTTGCAAGCATCCAACAGTTGCGAACAAATGGGTTGTTCCTTGCGTTATAAAGTCGGGATAAACTCATCGGCATAGCCAAATCTGGAGGATTATGCAACTCAACCTCAATTGCTATATAATCAGTACGACTGCTGATATAAAGTTCTATTTCTTGGGACTGCGTAAGTGTACCAGCCCGCAAAATTAATCGCTCAATTGTTTCTTGGTAATCTGCCATAGACGCGATCTGGCGCAGTTTAGCCAATTCTCCCAATTTCTGGCTTCTGATTGGTGGCCCAAAATGAAGATTACAATGACGTTTGAAGTCATCCCAACACAGTTGAGGCAGATCTGTCTCCAATTGAAAAAACCAAAGTTGTGCATTGCCCTCCAAATGAAAAGAAGCAAAGTTTAGTTGAACCTTTTCTTCTTCCAGAGTTAGTTGGTATCGAAAGAAGTGTTCACACCTGTTCAACCATCCCAAAGGGTCCTCTTGGCCCACTAAATCGTGGGGAAATCCAGTTTTGTATGTCGAGGAATGATGAAACTTCCACCTGTTTCTGATCCCAACCCTCCTGTCACTCTTTTTTTTACCCTTCCAACTCCAATTCTGACTGATATGTTTAGTTGAATCAGAATCGACCTTAGAATTCTCTAAATTCTTTGTGAGTGCATCCAAATGTCCAAATTGACATCACGTTCTTCGTGGAACAAGTTCACCAATTGTGCTAGTTGATGTTGAATTTGGTCTCCCATGACTCCCGTCTCTGATACCAAGTTGTCATGGTCCCTTGTTGAGGATATATTTCCGGGACGTTGCAAGATAAAATTTGAAGTTTTCTTTTTTCTACCTATGGCGCTGGTTCGTTAGAGAGAATCTGCAATCTCTTGAGTTTGAAGTACTCAAAGACTTAGTAATTTCTGCTTATCATTTCACTGAATGCAGACAACACTAAATACAACTCTAGTGGATAACCACCCATTTAAAAACAAGGAAGTAACTTCCTACTATAACTGAAATGAAAAAGCGGAGGAAAAACCTCCTTTCTGCAAAAACTGCTACATAAAAATAGGAAAAATAAATAACTAAAAAGCTGTAATAATCTACTGTAAACACTACTATACAGAAATAATAAAATTAATAACTTATTAGCTGAAGTAATCTACTTTCTACTTCCCTTTAATCTTCCATCTGTAAACCATTGGTGGACTAAATAGGTGCTAACAGTAAGTGGCAGTCAAGAAAGCCTTTCCCAAAGGTATTGTGGAACTTTACTGGTAAACATTAAAGCTCTCGTTACCTTTAAAAGCTGTCTATCCTCTCTTTTAGCAATACCATTTTGTTGAGGTGAATCCAAACAAGAGCTTTGGTGTTCTACCTCAGTTTTTCTTAAAAGAATTTGCTAAGTGTTCATTATAAAATTCACGACCTTTGGTCACTCTGAAAAATCTTGATTTTCTCATTAAATTGTGTTTCCACCATGACATAGAAAATCTTAAATACATTTTTATTGTTCCCTACACAAGGAGTGTAAGTAGAGAAAAAACAGGAACTTCAGTCATGTGGTCACTAGCTCCTAAATCTATGATCCAAGAATCTATTTGGTTGAATTGCACTAAAAAAAGCAGACGATACAATATCTGTTTCAGCAAAAAAGTAAGAAGGATTATAAGAATTTGGTGCATTTGGACGAAATTGTGGAGAATGAAGAAGTTTGTGCAGAATTTCTAGTTGTTCCCTTGTCCTTGTAAATGGAGACGTCTCTGGAGAAGGTTGCTGCCCCTGATCAAAATAGGTTTTTTGAATGGCCTGCTCACTTTGATATTGAAAGCCACGATTATCAACTCTCTTCTTCCAATTTAGTGGTTTCCCATAAATCTTCCAACATGTTTCACGGGCGTGCCAATGTTTTTTGCAATGATCTCACCATGACCTTTTGATTTTGTCATCTTTATTCTTCACTATTACAAGAGCTAAAAAGTCTATAGTAGGTTTTAGTTCAACATCTAAATCAAGTCTTGTCTTAACTTTCTTCCTAGTTTCCTCTCTCCTAATGGCAGAAAAAGTTTCACAAAGTGAGGGCAGAGGATATTTTCACAGGATTCGTGACCTTACCTCGTCAAACTCTCAGACCCAATTTAACGCTGCTAAAAATGGAAAACTCTCATTTTCTTCCCTTTTTTGCTTTCACTCTATTCACAGAACATTGTGATTCATCATTTTAACACCGGTCTAACTCCTTCCACAAAGACACCATTTCTTTATAATAAGCAGTGAATTCCTTCTCACTCTACTTAGCTTGCCATAGTTTAATTTTTAACTAAAAGTTAGCATGCTATAATTTAATTTTTAACTAAAATTTTTGAGAGGTATTTTCTACATTAGAATATGTCTCTCTAAGATTTACCGAAGGCTAGTTCATGGAATTTATTAACCAAGCAATCACGAGTGAATTCTCTAATCTCCAGGAGTTCATCTTTGGGTCTTCAACTCCCAGCTTTTACATCTCTCCGGTCAGATGTCTTATCTTTCCACGGCTATCGACTGCAAGCTTTACGGATTGTGCCCATTCTAGATAGTTCTTCCCATTAATGGATGAGAAATTGACTGGAAGGGCATGCGCGAAGCGCTGCCTCCTTGAGTCATCAGATTTTCTGTAGGAGCTTCCAGGGAAGAACTTTTGTCTTGTGTTGGAACTGTTGATGTTCCAGTAAGATGCTCTCCATGAAAGGATGGTTTGTCCATATGATATTAGGGGAAAAAGTCCCGCTATGATACCATGAAAGTTTGGATATGCAAAGTATATTTTTATTCATAGCGTTTGTACAGTATTTATAAGAGAACAAGATCGATCAAATAAACTAATCTACGCCTAATTCTTAGGAGATCCTTAAAAGAGATTTCAAACTACTTTCCTAGAATAATATATTCTATCCCATATTTATAGAGCAGATTATAATCAAATATTCTAGCTTATCTGTGGAGCAAATTGCAATCAATCTGCCAGCTCATTGATGGAGTAGATTATAACTAAATCTGTCAACTCATTGGACAATTATCATAATACTTTTGTCTAATCTTATATGATTACACATTTATCATACACCCTCATTTCTTTGACATTCATCTTCCCAGTGTGTTGAGCTTAAGAGGTCTGACTCTTAATTATATATAACACATTACTTGTCTCACAACTTCCTATAAAGCTTGGTTCCACTTTTTGGTATTTTCCTACCGCATGAAACTCAACAGTCCATTTGATTGTTCTATTTAATTTATATGTTATGTTTTCGAAATCATTTTCCTGGAAAATTAAGTCTAGATATCTGAAATGATCATTAGGCACCATTAAAACTCACATATAATCTTATTTGAGCATCATTCCTCTCAAACGGGACTAGATTTGCATTGCATATACCCTTTCTTCTACTTATTCTAAAACACTGACTATCGATATTTATTCTAAAATCTTACTATCTGAAGTGTTTCTTTGTGATTCCAACTTTTGATTTACTCATAACTTATTTAATCAACTAAAACAATATCATCTATGGCATGCATTATGAAATCTCATTCAATATGACATTTATTTGTTCATTTATAACTAGAATAAAGAAGTATTTTCTCACGGACAATCTGAGGTGTAAACACATAGATAAGAGAATTTCTTCACTCTCTCCTCCGACTATTCTTACACTTGTGAGTGCTGACTATTCTTACACTTGTGAGTGCTCCTTCACATATATCCTGTATGTCATTTATTTATTTGAAATTCATTCTTATCTTCTCAAGTACCCAACAAAGGCCTTCTTTTTGCACATTATCATATGTCTTTCTAAGTTGATAGATATGAATCATTATGTGGTGATATTCTCAGTAAATTTGTATCAATTTTCTTAGAAAAATTATAAGCTTCCTTTTTGCGTGTAATAAGTAAAAATTAGCTAAAACTAAATCACAACGGAAGACAAACTCTAGAGTATCTTCCTTTCTTTATCCCAAGTACCATAACCAAGTGGTCCTTGTCCTTGGTATACCCGCATGTCCATTCAGATCTTTCCTAATAAAGATCTATTGGCCATTTGAGATCCTTTTGACCATATGTTCTCAAAAGTGAGTTTTAGTTTTACCATCTCATTCCTTTTGCAGAGTGTGAACACTAATGGTGTTAATTGTCTTCCAGATTAGTTATTAGAGAAAACTACTATAAAAAATGACATTCCATCTTCATTAATAACAGGGTCGGTTTTAGATGGCCTTTTGTGGGAAAGAATTATGGATTGAATTGTTCTGTATGACAGCATTATTTCTTTATAGAAAAAACAGCCATGTGTGGTGAGGTACATCTACGACCGATAGCCAATTTGGCCAAGTTTCTGCAAAGCCGAAAGTGTTTTTTGTTAAAAGAGAAGTTCTTATTTTAGAGAATTGAGAGGTTTGACCAAGATTTTAGGAAAAAAGATAAGTGTATTTTGAGTAGTAGCCGGAGTTGTATTTTGAAAAGCTAAAAGACACTACTTTTCCCAAGAAGCATTTTTGGAACCATGGCCAAGCACAATTTTCTGATCTTATATTGGCAAAAATGGTTGTCACAATGATTAGCCAAACACAAAATGCTACTCTCCAAAAGTACTTTGTCGAGTCGAAAAGTTCTTCTGACAGAAACACTTCTCGACATAAGCAGATTTTTAGAAGTTTGGTCAAACAGGTTATGAATCTCCTTGTGTAAAATTGGGGAACATTATATCATTGCTCAGTTAAAATTAATAGAATTACCCTTCAGGGTGGCCCAGTGGTTTGAGCTTGGGACTTCCATGTCAGAGGTCTCATGTTCGAAACCTTTACCAGCGAAAGCAAGGGGTTTATCTTCTGGGTCGAGCTCGTCATACCAGGCTTGCCTCGGGTTACCTCTCCTATGTGGTTTGCAAGCTATTGCATAGGAGCGGGGTTTTTACCTTGTGCGGACTTAAAGAGTAGCGGCTGCGGATTTCCCTTGTCATAAAAAAAAAAGATCAATAGAAGCACACTTTGCAAAACCTTAGTCACTTTGTGATCATGCAATATATGTTATTGAAAAGTCAGTTTCTTGTGAAATTCCTTAGTTATCACTATTTATCATTTATTCATTACTTCACTACTAACTGTACTGGCGACTAATATATCTTTCCTAATGTCACATTACATGTTTCCCTCCTTTTGCAGAGACACCTATTGGATATTCTTGACAAAGCTGTAGCAGATGATGTAATGATGGTTTT</genome_strand>
        <mrna_strand>AACTAGCTAACAACCCCTTGTTCAATTTCTTTTCTCTCCCCAAA-TCAATGGCTCTTTCTTCCAAATGATCCCTCTATTCCATTCCCCCTTTCTCCCATGAACGTATGCTCTAATGGATAGTAGAACTGCTTTTTCGGATTCCAATGATATTAGTGGAAGCAGTAGTATATGCTGCATGAACGAATCGGAAACTTCACTGGCAGACGTCAATTCCCTCAAACGTCTATCAGAAACACTAGAGTCTATCTTCGATGCGTCTGCGCCGGATTTCGACTTCTTCGCTGATGCTAAGCTTCTGGCTCCAGGCGGTAAGGAAATTCCGGTGCATCGGTGCATTTTGTCGGCGAGGAGTCCTTTTTTTAAGAATGTATTCTGTGGGAAAGATAGCAACACGAAGCTGGAACTCAAAGAGCTGATGAAAGAGTATGAGGTGAGTTTTGATGCCGTGGTCAGTGTGCTCGCCTATTTGTATAGTGGAAAAGTTAGGCCTGCATCTAAAGATGTGTGTGTTTGTGTGGACAATGAGTGCTTGCATGTAGCTTGTAGGCCAGCTGTGGCCTTCATGGTTCAAGTTTTGTACGCATCCTTTACCTTTCAGATCTCTCAATTGGTCGACAAGTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACCTATTGGATATTCTTGACAAAGCTGTAGCAGATGATGTAATGATGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E300291" ref_strand="+" ref_description="SGN-E300291 	[cLEW-17-O11]">
      <seq>ctcttcttctctgtcccttttcctcccccaattcatcatataattcctaactagctaacaaccccttgttcaatttcttttctctccccaaattcaatggctctttcttccaaatgatccctctattccattccccctttctcccatgaacgtatgctctaatggatagtagaactgctttttcggattccaatgatattagtggaagcagtagtatatgctgcatgaacgaatcggaaacttcactggcagacgtcaattccctcaaacgtctatcagaaacactagagtctatcttcgatgcgtctgcgccggatttcgacttcttcgctgatgctaagcttctggctccaggcggtaaggaaattccggtgcatcggtgcattttgtcggcgaggagtcctttttttaagaatgtattctgtgggaaagatagcaacacgaagctggaactcaaagagctgatgaaagagtatgagagacacctattggatattcttgacaaagctgtagcagatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="-" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="102943" stop="92470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102643" g_stop="102165" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102164" i_stop="92814" i_length="9351">
            <donor d_prob="0.597" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92813" g_stop="92770" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="523" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="-" ref_id="SGN-E300291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102643" e_stop="102165"/>
          <exon e_start="92813" e_stop="92770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTTCTCTGTCCCTTTTCCTCCCCCAATTCATCATATAATTCCTAACTAGCTAACAACCCCTTGTTCAATTTCTTTTCTCTCCCCAAATTCAATGGCTCTTTCTTCCAAATGATCCCTCTATTCCATTCCCCCTTTCTCCCATGAACGTATGCTCTAATGGATAGTAGAACTGCTTTTTCGGATTCCAATGATATTAGTGGAAGCAGTAGTATATGCTGCATGAACGAATCGGAAACTTCACTGGCAGACGTCAATTCCCTCAAACGTCTATCAGAAACACTAGAGTCTATCTTCGATGCGTCTGCGCCGGATTTCGACTTCTTCGCTGATGCTAAGCTTCTGGCTCCAGGCGGTAAGGAAATTCCGGTGCATCGGTGCATTTTGTCGGCGAGGAGTCCTTTTTTTAAGAATGTATTCTGTGGGAAAGATAGCAACACGAAGCTGGAACTCAAAGAGCTGATGAAAGAGTATGAGGTGAGTTTTGATGCCGTGGTCAGTGTGCTCGCCTATTTGTATAGTGGAAAAGTTAGGCCTGCATCTAAAGATGTGTGTGTTTGTGTGGACAATGAGTGCTTGCATGTAGCTTGTAGGCCAGCTGTGGCCTTCATGGTTCAGGTTTTGTACGCATCCTTTACCTTTCAGATCTCTCAATTGGTCGACAAGTTTCAGGTGAACTGTCAAAAACCCTACAATATCAATTGTTCTTCTTGTTAATAGAATTGCAACTTTATAAGTTAGTCAGCTGTATTACTAATGCCCTCAACTTAATGTCCTTGCAAAATCTTTCTTGATTTACTTATGTTTGCCTTTATTTTTCTGAGTGAAATAGTGAGAATTTATTAAGTTGCTTATGGAATTTTGAGTATCTCTGAGAGTCACTTGTGAGCATGTTTTAATTTTAAATAATTGGTATGATCTAAATGTGCCCTTTTTTTCTTGTACTTCATTCTTAGTTAAGTCCACTTGCTTTTGAGATATTTTAGGACTTTTTTCGACTACTTCATTTCATGTAATTTCAGGTTCACTCCATTCTGGTTTTAACTTCTATAATTATCATAGTGTCACATTTATGACTTGAGCATTTGGAGGTCTATGTAGGAAATGATCAAACCTACTCAAGTGATGTCTCACAACTTTCCCTTCATGTGGGTACTCATGATCCTTGCCAGAAAATATTGAGAGTCTAGATACTGCAAAAGTATAGCTTTATTCATTGCGTTTGTACAATATTTATAAGAGAACAAGTTAGCTCAAATAAATTAATCAATTCTTAATTATTAGGAATTCTTGAATCAAAGGATTTCCTCTTAACTATTTTCCTAGAATAATATATTCAATTCCATATTTACAAGAGCAGATTATAACCAAATCTGCCAGCTTATTTGTGGAGCAAATTACAATCAAATCTGTTAGCTCATTGATGGACCAGATTGTGACTAAATCTGCCTATATATTCGACACTACCCCGCAAGTTGGCATGTAAATACTGAACATGCCTAACTTGCTCACAAGGACTCAAAAATAGTCCTGAAAAGACCTTTTGTGAAAATAACTGCAACTATGTCCACTTCAACATGCTTTATTGTCCGCCTTCATTTTCACAATACTACTTCAATGGAAAACTCATATGCCTTCTTAGTTCTTCCAAAAATCTCACGAGCCACAACATTTCACAAATTTTGTGTGTCATGGATCGATACTCAGCCTCAACACTACTTCGAGCTGCCACATTTTGATTCATACTTCTCCATGCCACTAAATTTCCCCAAACAAAGGTACAATATCCAGACGTAGACCTTCTATCAATAAATGAACCAACCCAATCTACATTCGTATAAGCCTCAATACTTCCTTGCTCATTCTTTTTAAATAACAATCCTTTTCAGGAGAGCTCTATAGATACCTTAAGATTCGATACACATCTTCTTGCTGTTCTTCTCCTGGAGCATGCATGAACTGACTTACTAGTCTCAGATCAAAGGAAATATCGGGTCTAGTATGTGACAAGTAAATAAACTTACCCTACCAATCTCTGATCTGACCCCTATCAATCAATTTTCCTTCCTTTACGAACTTTAGATTTAGATCAATTGGAGTTTTAGTTGGTCTACAACCACTCATTCTTGTTTCTTTTAGCAGATCAAGAACATACTTCCTTTGTTACACTATAATATTCCTTTATTTGATTTGTGCAACTTTCATGCCGAGAAAGTACTTTAGCAGGCCGAAGTCCTGTATCAAAGAATCTGAGCCAAGATGTTCATATATATATATATATACACACACACACACACACACACATCATCTTCTTTGAGGAATATATCATTGACATACACTAGAAGAATTGTTGTTTTTTGTTCTAGTGAATGTCAAGTAAACATTGTGTGATATGCTTGTCCTTGCACATATCCTTGCTTCTTCACAATTGAGTAAATTTTTCGAACAAAGTCCTTTGAGATAATTTTAGACTATAAAGAGATCTTCTAAGCTTGCATATCTTTGACTTGTACTTCCCTTCAAAAGTTTGAAGAGGGGTCCATATAGACTTCTTCCTCTAGGTACTTTTTAAGAAAGCATTCTTCACATCCAACTATTGAAGAGACCTGTCAAGATTTACTACGATTGTCAACTAAACTCTAATTGAGTTTAGCATAGCTACTGGAGCAAACTTCTCAAGATAGTCAATGACATATGTTTGCGTGAATCCCTTAGCTACTAGGCAAGCCTTATACCTTGCTAAGGATCTATTCGATTTGAATTTGGTGGTGAACACCCATTTACAACCACGAACTCCCACGTCTTTTTTTTTTCAAGAGCTCAAAATTCCTCCAAAATAGCCTCCTTATGGCTTCCACTCGGGAACTCGTAGGGCATCCTGCACATTTTTTGGAATCTCCACACTAGAAAGTTGTGAAGTAAGGGCTGAATAACTAGGAGACAACTTTTTATTGGACAATAACATAGAAACAAAATAATTAGGAGCATTTCTAACACCTTGTGTTTTTCTATAGGTTGGTCCAGATCTGAGGAGTTAGAAATAGAATTGATTGGAAGATTACCTGAATACCAATAAGGTCTTGCGGAACTGACTTTTGGTAGTGTTGAAAATCTCCAATCTTTTTTCCTTGAGTTCAGTTCCTTTTCGAGTACACCTATATTTCTTTTGTTGTTCTTTATTCCCCATTTTTATTTTTCATTTGAAGGCTCTACAAGTTCAATTTATGAGTTCTTATCATTTAAGTGACTTAGGTCCCTACCATCTCTTGGATCACACTTATTTATATCTTTTCCTAGACCCCTCACATCAGAATTTTTTGTAATATCAGGCTCCTCATTTGCCTGATTTCTAGTTTCCTCAATATCACAAAAAGATGAATCTTCACCTATATGATGCTCCCCCTAAAGACGAGTGATAAAATAAAGTTGGGACTCAAAGAAAGTTGGATCCATTGTGACAGTTATCTTCTTAGCCTGTGGAACATAACACTTACATCCCTTTGAACTTGGGGCATATCCTACAAAAACACACTTCTTAGCCCGCGGTCAAGTTCACTACGATTATGAACATGAAAAAATGTTGTTCAATCAAAATCTTCAGAGGCAGATCTCTAGTTAACCTAGAACTAGGAAAACTCTCTCAGATAACTTTGGAAGGTGTTTTAAATTCAAGAGGAAGAGATGACATCCTATTAATAAGGTAAGTGTTATGGTCCCTTGTTAAGGATATAGTTACCAGACGTTGCAAGATAAAATTTGAGGTTTTTGTTTTTCTACCTATGGCGCTGGTTCGTTAGAGAGAACCTACAATCTCTTGAGTTTGAAGTACTCAAAGACTTAGAAATTTTCTACTTATCATTCCACTGAATACAAACAACACTAAATACAACACTAGTGGATAACCACCCATCTAAAAACAAGGTAGTAACTTCCTTGAAATGAAAAAGTGGAGGAACTGAAAACAAGGAAGTAACCACCCATCTAAAAAACAAGGAAGCAACTTCCTACTATAACTGAAAGAGATAAGTGTCAAAAACACACCTAAACTATTCATTTTTTTTGAGTTTCATACCTAAACTATTGGAAGTGTGAGTTTCATACCTAAACTATCACTTTCAATAGTTTAGGTATGAAACTCAAAAAATAAGAGGTATAGTTTAGGTGTGTATTTGACACTTATCTCTAACTGAAATGAAAAAGTGGAGGAGTAACCTCTTTACTGCAAAAATTGCTACATAAAAATAAGAAAAATAAATAACTAAAAAGCTGTAATAAGCTATTGTAAACACTGCTATACAGGAAAAAAAAACTTATAAGCTGAAGTAATCTAATTTCTAATTCCCTTAAATCTTCCATCTGTAAACCATTGGTGGACTAAAAAGGTGCTAACATTACTCCCCTCTTCAAATTGCGCTTGCCCACAAGCGCTAAGTACGGAAAGTGTAGTGTTTCCCTCTTTTCCAACAAATTTTTCCTCATCGTATTTAGAGTCAATCCAAAATAACTTCTTGCACGGATGACCTCGAGTGGATGGTTCATCACAGTTGAAATGATGTCTCTTAAGTCATCTTTCCTCCATTTCAGATCTGCTCTGTTTCTTCACAAATCTGACATGTTGTAGAGGTGAGAAATCTGCTGTTTTTGATTTGCAAGCATCCAACAGTTGCGAACAAATGGGTTGTTCCTTGCGTTATAAAGTCGGGATAAACTCATCGGCATAGCCAAATCTGGAGGATTATGCAACTCAACCTCAATTGCTATATAATCAGTACGACTGCTGATATAAAGTTCTATTTCTTGGGACTGCGTAAGTGTACCAGCCCGCAAAATTAATCGCTCAATTGTTTCTTGGTAATCTGCCATAGACGCGATCTGGCGCAGTTTAGCCAATTCTCCCAATTTCTGGCTTCTGATTGGTGGCCCAAAATGAAGATTACAATGACGTTTGAAGTCATCCCAACACAGTTGAGGCAGATCTGTCTCCAATTGAAAAAACCAAAGTTGTGCATTGCCCTCCAAATGAAAAGAAGCAAAGTTTAGTTGAACCTTTTCTTCTTCCAGAGTTAGTTGGTATCGAAAGAAGTGTTCACACCTGTTCAACCATCCCAAAGGGTCCTCTTGGCCCACTAAATCGTGGGGAAATCCAGTTTTGTATGTCGAGGAATGATGAAACTTCCACCTGTTTCTGATCCCAACCCTCCTGTCACTCTTTTTTTTACCCTTCCAACTCCAATTCTGACTGATATGTTTAGTTGAATCAGAATCGACCTTAGAATTCTCTAAATTCTTTGTGAGTGCATCCAAATGTCCAAATTGACATCACGTTCTTCGTGGAACAAGTTCACCAATTGTGCTAGTTGATGTTGAATTTGGTCTCCCATGACTCCCGTCTCTGATACCAAGTTGTCATGGTCCCTTGTTGAGGATATATTTCCGGGACGTTGCAAGATAAAATTTGAAGTTTTCTTTTTTCTACCTATGGCGCTGGTTCGTTAGAGAGAATCTGCAATCTCTTGAGTTTGAAGTACTCAAAGACTTAGTAATTTCTGCTTATCATTTCACTGAATGCAGACAACACTAAATACAACTCTAGTGGATAACCACCCATTTAAAAACAAGGAAGTAACTTCCTACTATAACTGAAATGAAAAAGCGGAGGAAAAACCTCCTTTCTGCAAAAACTGCTACATAAAAATAGGAAAAATAAATAACTAAAAAGCTGTAATAATCTACTGTAAACACTACTATACAGAAATAATAAAATTAATAACTTATTAGCTGAAGTAATCTACTTTCTACTTCCCTTTAATCTTCCATCTGTAAACCATTGGTGGACTAAATAGGTGCTAACAGTAAGTGGCAGTCAAGAAAGCCTTTCCCAAAGGTATTGTGGAACTTTACTGGTAAACATTAAAGCTCTCGTTACCTTTAAAAGCTGTCTATCCTCTCTTTTAGCAATACCATTTTGTTGAGGTGAATCCAAACAAGAGCTTTGGTGTTCTACCTCAGTTTTTCTTAAAAGAATTTGCTAAGTGTTCATTATAAAATTCACGACCTTTGGTCACTCTGAAAAATCTTGATTTTCTCATTAAATTGTGTTTCCACCATGACATAGAAAATCTTAAATACATTTTTATTGTTCCCTACACAAGGAGTGTAAGTAGAGAAAAAACAGGAACTTCAGTCATGTGGTCACTAGCTCCTAAATCTATGATCCAAGAATCTATTTGGTTGAATTGCACTAAAAAAAGCAGACGATACAATATCTGTTTCAGCAAAAAAGTAAGAAGGATTATAAGAATTTGGTGCATTTGGACGAAATTGTGGAGAATGAAGAAGTTTGTGCAGAATTTCTAGTTGTTCCCTTGTCCTTGTAAATGGAGACGTCTCTGGAGAAGGTTGCTGCCCCTGATCAAAATAGGTTTTTTGAATGGCCTGCTCACTTTGATATTGAAAGCCACGATTATCAACTCTCTTCTTCCAATTTAGTGGTTTCCCATAAATCTTCCAACATGTTTCACGGGCGTGCCAATGTTTTTTGCAATGATCTCACCATGACCTTTTGATTTTGTCATCTTTATTCTTCACTATTACAAGAGCTAAAAAGTCTATAGTAGGTTTTAGTTCAACATCTAAATCAAGTCTTGTCTTAACTTTCTTCCTAGTTTCCTCTCTCCTAATGGCAGAAAAAGTTTCACAAAGTGAGGGCAGAGGATATTTTCACAGGATTCGTGACCTTACCTCGTCAAACTCTCAGACCCAATTTAACGCTGCTAAAAATGGAAAACTCTCATTTTCTTCCCTTTTTTGCTTTCACTCTATTCACAGAACATTGTGATTCATCATTTTAACACCGGTCTAACTCCTTCCACAAAGACACCATTTCTTTATAATAAGCAGTGAATTCCTTCTCACTCTACTTAGCTTGCCATAGTTTAATTTTTAACTAAAAGTTAGCATGCTATAATTTAATTTTTAACTAAAATTTTTGAGAGGTATTTTCTACATTAGAATATGTCTCTCTAAGATTTACCGAAGGCTAGTTCATGGAATTTATTAACCAAGCAATCACGAGTGAATTCTCTAATCTCCAGGAGTTCATCTTTGGGTCTTCAACTCCCAGCTTTTACATCTCTCCGGTCAGATGTCTTATCTTTCCACGGCTATCGACTGCAAGCTTTACGGATTGTGCCCATTCTAGATAGTTCTTCCCATTAATGGATGAGAAATTGACTGGAAGGGCATGCGCGAAGCGCTGCCTCCTTGAGTCATCAGATTTTCTGTAGGAGCTTCCAGGGAAGAACTTTTGTCTTGTGTTGGAACTGTTGATGTTCCAGTAAGATGCTCTCCATGAAAGGATGGTTTGTCCATATGATATTAGGGGAAAAAGTCCCGCTATGATACCATGAAAGTTTGGATATGCAAAGTATATTTTTATTCATAGCGTTTGTACAGTATTTATAAGAGAACAAGATCGATCAAATAAACTAATCTACGCCTAATTCTTAGGAGATCCTTAAAAGAGATTTCAAACTACTTTCCTAGAATAATATATTCTATCCCATATTTATAGAGCAGATTATAATCAAATATTCTAGCTTATCTGTGGAGCAAATTGCAATCAATCTGCCAGCTCATTGATGGAGTAGATTATAACTAAATCTGTCAACTCATTGGACAATTATCATAATACTTTTGTCTAATCTTATATGATTACACATTTATCATACACCCTCATTTCTTTGACATTCATCTTCCCAGTGTGTTGAGCTTAAGAGGTCTGACTCTTAATTATATATAACACATTACTTGTCTCACAACTTCCTATAAAGCTTGGTTCCACTTTTTGGTATTTTCCTACCGCATGAAACTCAACAGTCCATTTGATTGTTCTATTTAATTTATATGTTATGTTTTCGAAATCATTTTCCTGGAAAATTAAGTCTAGATATCTGAAATGATCATTAGGCACCATTAAAACTCACATATAATCTTATTTGAGCATCATTCCTCTCAAACGGGACTAGATTTGCATTGCATATACCCTTTCTTCTACTTATTCTAAAACACTGACTATCGATATTTATTCTAAAATCTTACTATCTGAAGTGTTTCTTTGTGATTCCAACTTTTGATTTACTCATAACTTATTTAATCAACTAAAACAATATCATCTATGGCATGCATTATGAAATCTCATTCAATATGACATTTATTTGTTCATTTATAACTAGAATAAAGAAGTATTTTCTCACGGACAATCTGAGGTGTAAACACATAGATAAGAGAATTTCTTCACTCTCTCCTCCGACTATTCTTACACTTGTGAGTGCTGACTATTCTTACACTTGTGAGTGCTCCTTCACATATATCCTGTATGTCATTTATTTATTTGAAATTCATTCTTATCTTCTCAAGTACCCAACAAAGGCCTTCTTTTTGCACATTATCATATGTCTTTCTAAGTTGATAGATATGAATCATTATGTGGTGATATTCTCAGTAAATTTGTATCAATTTTCTTAGAAAAATTATAAGCTTCCTTTTTGCGTGTAATAAGTAAAAATTAGCTAAAACTAAATCACAACGGAAGACAAACTCTAGAGTATCTTCCTTTCTTTATCCCAAGTACCATAACCAAGTGGTCCTTGTCCTTGGTATACCCGCATGTCCATTCAGATCTTTCCTAATAAAGATCTATTGGCCATTTGAGATCCTTTTGACCATATGTTCTCAAAAGTGAGTTTTAGTTTTACCATCTCATTCCTTTTGCAGAGTGTGAACACTAATGGTGTTAATTGTCTTCCAGATTAGTTATTAGAGAAAACTACTATAAAAAATGACATTCCATCTTCATTAATAACAGGGTCGGTTTTAGATGGCCTTTTGTGGGAAAGAATTATGGATTGAATTGTTCTGTATGACAGCATTATTTCTTTATAGAAAAAACAGCCATGTGTGGTGAGGTACATCTACGACCGATAGCCAATTTGGCCAAGTTTCTGCAAAGCCGAAAGTGTTTTTTGTTAAAAGAGAAGTTCTTATTTTAGAGAATTGAGAGGTTTGACCAAGATTTTAGGAAAAAAGATAAGTGTATTTTGAGTAGTAGCCGGAGTTGTATTTTGAAAAGCTAAAAGACACTACTTTTCCCAAGAAGCATTTTTGGAACCATGGCCAAGCACAATTTTCTGATCTTATATTGGCAAAAATGGTTGTCACAATGATTAGCCAAACACAAAATGCTACTCTCCAAAAGTACTTTGTCGAGTCGAAAAGTTCTTCTGACAGAAACACTTCTCGACATAAGCAGATTTTTAGAAGTTTGGTCAAACAGGTTATGAATCTCCTTGTGTAAAATTGGGGAACATTATATCATTGCTCAGTTAAAATTAATAGAATTACCCTTCAGGGTGGCCCAGTGGTTTGAGCTTGGGACTTCCATGTCAGAGGTCTCATGTTCGAAACCTTTACCAGCGAAAGCAAGGGGTTTATCTTCTGGGTCGAGCTCGTCATACCAGGCTTGCCTCGGGTTACCTCTCCTATGTGGTTTGCAAGCTATTGCATAGGAGCGGGGTTTTTACCTTGTGCGGACTTAAAGAGTAGCGGCTGCGGATTTCCCTTGTCATAAAAAAAAAAGATCAATAGAAGCACACTTTGCAAAACCTTAGTCACTTTGTGATCATGCAATATATGTTATTGAAAAGTCAGTTTCTTGTGAAATTCCTTAGTTATCACTATTTATCATTTATTCATTACTTCACTACTAACTGTACTGGCGACTAATATATCTTTCCTAATGTCACATTACATGTTTCCCTCCTTTTGCAGAGACACCTATTGGATATTCTTGACAAAGCTGTAGCAGATGATGT</genome_strand>
        <mrna_strand>CTCTTCTTCTCTGTCCCTTTTCCTCCCCCAATTCATCATATAATTCCTAACTAGCTAACAACCCCTTGTTCAATTTCTTTTCTCTCCCCAAATTCAATGGCTCTTTCTTCCAAATGATCCCTCTATTCCATTCCCCCTTTCTCCCATGAACGTATGCTCTAATGGATAGTAGAACTGCTTTTTCGGATTCCAATGATATTAGTGGAAGCAGTAGTATATGCTGCATGAACGAATCGGAAACTTCACTGGCAGACGTCAATTCCCTCAAACGTCTATCAGAAACACTAGAGTCTATCTTCGATGCGTCTGCGCCGGATTTCGACTTCTTCGCTGATGCTAAGCTTCTGGCTCCAGGCGGTAAGGAAATTCCGGTGCATCGGTGCATTTTGTCGGCGAGGAGTCCTTTTTTTAAGAATGTATTCTGTGGGAAAGATAGCAACACGAAGCTGGAACTCAAAGAGCTGATGAAAGAGTATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACCTATTGGATATTCTTGACAAAGCTGTAGCAGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E208797" ref_strand="+" ref_description="SGN-E208797 	[cLEC-51-F2]">
      <seq>ttcctcctcttcttctctgtcccttttcctcccccaattcatcatataattcctaactagctaacaaccccttgttcaatttcttttctctccccaaattcaatggctctttcttccaaatgatccctctattccattccccctttctcccatgaacgtatgctctaatggatagtagaactgctttttcggattccaatgatattagtggaagcagtagtatatgctgcatgaacgaatcggaaacttcactggcagacgtcaattccctcaaacgtctatcaaaaacactaaagtctatcttcgatgcgtctgcgccggatttcgacttcttcgctgatgctaagcttctggctccaggcggtaaggaaattcccgtgcatcggtgcattttgtccgccaggagtccttttttttaagaatgtattctgtgggaaagatagcaacacgaagctggaactcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="-" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="102949" stop="101887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102649" g_stop="102187" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="-" ref_id="SGN-E208797" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102649" e_stop="102187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCCTCTTCTTCTCTGTCCCTTTTCCTCCCCCAATTCATCATATAATTCCTAACTAGCTAACAACCCCTTGTTCAATTTCTTTTCTCTCCCCAAATTCAATGGCTCTTTCTTCCAAATGATCCCTCTATTCCATTCCCCCTTTCTCCCATGAACGTATGCTCTAATGGATAGTAGAACTGCTTTTTCGGATTCCAATGATATTAGTGGAAGCAGTAGTATATGCTGCATGAACGAATCGGAAACTTCACTGGCAGACGTCAATTCCCTCAAACGTCTATCAGAAACACTAGAGTCTATCTTCGATGCGTCTGCGCCGGATTTCGACTTCTTCGCTGATGCTAAGCTTCTGGCTCCAGGCGGTAAGGAAATTCCGGTGCATCGGTGCATTTTGTCGGCGAGGAGTCC-TTTTTTTAAGAATGTATTCTGTGGGAAAGATAGCAACACGAAGCTGGAACTCAA</genome_strand>
        <mrna_strand>TTCCTCCTCTTCTTCTCTGTCCCTTTTCCTCCCCCAATTCATCATATAATTCCTAACTAGCTAACAACCCCTTGTTCAATTTCTTTTCTCTCCCCAAATTCAATGGCTCTTTCTTCCAAATGATCCCTCTATTCCATTCCCCCTTTCTCCCATGAACGTATGCTCTAATGGATAGTAGAACTGCTTTTTCGGATTCCAATGATATTAGTGGAAGCAGTAGTATATGCTGCATGAACGAATCGGAAACTTCACTGGCAGACGTCAATTCCCTCAAACGTCTATCAAAAACACTAAAGTCTATCTTCGATGCGTCTGCGCCGGATTTCGACTTCTTCGCTGATGCTAAGCTTCTGGCTCCAGGCGGTAAGGAAATTCCCGTGCATCGGTGCATTTTGTCCGCCAGGAGTCCTTTTTTTTAAGAATGTATTCTGTGGGAAAGATAGCAACACGAAGCTGGAACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-4ev83c/sgn_ests_tomato" ref_id="SGN-E258244" ref_strand="+" ref_description="SGN-E258244 	[cLEG-49-L14]">
      <seq>aactagctaacaaccccttgttcaatttcttttctctccccaaattcaatggctctttcttccaaatgatccctctattccattccccctttctcccatgaacgtatgctctaatggatagtagaactgctttttcgggattccaatgatattagtggaaagcagtagtatatgctgcatgaacgaatcggaaaacttcactgggcagacgtcaatttccctcaacgtctatcagaaacactagagtctatcttcgatgcgtctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-EAQoj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0140K05.1" temp_strand="-" temp_description="C07SLm0140K05.1  AC212660.1 htgs_phase:1 submitted_to_sgn_as:gi|158262153|gb|AC212660.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07SLm0140K05, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="102895" stop="102033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102595" g_stop="102333" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0140K05.1" gen_strand="-" ref_id="SGN-E258244" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0140K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102595" e_stop="102333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAGCTAACAACCCCTTGTTCAATTTCTTTTCTCTCCCCAAATTCAATGGCTCTTTCTTCCAAATGATCCCTCTATTCCATTCCCCCTTTCTCCCATGAACGTATGCTCTAATGGATAGTAGAACTGCTTTTTC-GGATTCCAATGATATTAGTGG-AAGCAGTAGTATATGCTGCATGAACGAATCGG-AAACTTCACT-GGCAGACGTCAATTCCCTCAAACGTCTATCAGAAACACTAGAGTCTATCTTCGATGCGTCTGCG</genome_strand>
        <mrna_strand>AACTAGCTAACAACCCCTTGTTCAATTTCTTTTCTCTCCCCAAATTCAATGGCTCTTTCTTCCAAATGATCCCTCTATTCCATTCCCCCTTTCTCCCATGAACGTATGCTCTAATGGATAGTAGAACTGCTTTTTCGGGATTCCAATGATATTAGTGGAAAGCAGTAGTATATGCTGCATGAACGAATCGGAAAACTTCACTGGGCAGACGTCAATTTCCCTCAACGTCTATCAGAAACACTAGAGTCTATCTTCGATGCGTCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>28</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10774" PGL_stop="12120"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10774" e_stop="11132"/>
            <exon e_start="11239" e_stop="11419"/>
            <exon e_start="11508" e_stop="11596"/>
            <exon e_start="11704" e_stop="11791"/>
            <exon e_start="11894" e_stop="12120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.342" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10774" e_stop="11132" e_length="359"/>
          </exon>
          <intron i_serial="1" don_prob="0.342" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11133" i_stop="11238" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11239" e_stop="11419" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.961">
            <gDNA_intron_boundary i_start="11420" i_stop="11507" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11508" e_stop="11596" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11597" i_stop="11703" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11704" e_stop="11791" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="11792" i_stop="11893" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11894" e_stop="12120" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10774" stop="11132"/>
              <exon start="11239" stop="11395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10811" stop="11132"/>
              <exon start="11239" stop="11419"/>
              <exon start="11508" stop="11596"/>
              <exon start="11704" stop="11771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11063" stop="11132"/>
              <exon start="11239" stop="11419"/>
              <exon start="11508" stop="11596"/>
              <exon start="11704" stop="11744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11080" stop="11132"/>
              <exon start="11239" stop="11419"/>
              <exon start="11508" stop="11596"/>
              <exon start="11704" stop="11791"/>
              <exon start="11894" stop="12082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11080" stop="11132"/>
              <exon start="11239" stop="11419"/>
              <exon start="11508" stop="11567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11081" stop="11132"/>
              <exon start="11239" stop="11419"/>
              <exon start="11508" stop="11596"/>
              <exon start="11704" stop="11791"/>
              <exon start="11894" stop="11980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11081" stop="11132"/>
              <exon start="11239" stop="11419"/>
              <exon start="11508" stop="11596"/>
              <exon start="11704" stop="11745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11103" stop="11132"/>
              <exon start="11239" stop="11419"/>
              <exon start="11508" stop="11596"/>
              <exon start="11704" stop="11791"/>
              <exon start="11894" stop="11937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11368" stop="11419"/>
              <exon start="11508" stop="11596"/>
              <exon start="11704" stop="11791"/>
              <exon start="11894" stop="12120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCCTTTGTTCTTGTGTTGTATCTTATATTTGTAAAGAAGATTAACTGAAAGATGACAGTGATAAGAACAAACAGTTTTAAAGGAACAGAGTCAGAAACTATCACGAAGCCGAAGAAGAATTCGATAAATGTAACAAATTGCGAGCCTTTAAAACTTATGCTACACACAACATTGTCATTCAAAAATCTGGTTCAAGTTCAAGATTCTGTTGTGGCCCTTCCTGAACCTGCTCTCATGTTTTCACCCCGACCTGTTTGTGAACTCGATGCTGCAGCTGTTAAGCTTCAAAAAGTATACAAGAGTTACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATG : GTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCT : ATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTG : GTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATGTCCAAGGACAAAATTGCACCATCAATGCATCAAGTATCTCGGACCA : AAGGAGCGGGAATCATATGAAGTAGTCATTGAGAATGGGAAGCTTGTATATAAACAAAGTGGTGTATCAGTTAAGTCAGTAGAGGGTTCCAAGTCGATATTTGTTCTTAGCACAACAAGGACATTGTATGTAGGACAGAAGCAAAAGGGCACATTTCAACATTCGAGTTTCCTATCAGGTGGTGCTATCACAGCAGCTGGAAGACTAGTTGCTCATTCTGGAATTCT</gDNA_template>
            <first_frame> F  S  F  V  L  V  L  Y  L  I  F  V  K  K  I  N  *  K  M  T  V  I  R  T  N  S  F  K  G  T  E  S  E  T  I  T  K  P  K  K  N  S  I  N  V  T  N  C  E  P  L  K  L  M  L  H  T  T  L  S  F  K  N  L  V  Q  V  Q  D  S  V  V  A  L  P  E  P  A  L  M  F  S  P  R  P  V  C  E  L  D  A  A  A  V  K  L  Q  K  V  Y  K  S  Y  R  T  R  R  N  L  A  D  C  A  V  V  V  E  E  L  W :   W  K  A  L  D  F  A  A  L  K  R  S  S  V  S  F  F  N  V  E  K  P  E  T  A  V  S  R  W  A  R  A  R  T  R  A  A  K  V  G  K  G  L  S  K  D  E  K  A  Q  K  L  A  L  Q  H  W  L  E  A  :  I  D  P  R  H  R  Y  G  H  N  L  H  F  Y  Y  D  L  W  F  L  S  E  S  S  Q  P  F  F  Y  W :   L  D  V  G  D  G  K  E  I  N  L  E  K  C  P  R  T  K  L  H  H  Q  C  I  K  Y  L  G  P  :  K  E  R  E  S  Y  E  V  V  I  E  N  G  K  L  V  Y  K  Q  S  G  V  S  V  K  S  V  E  G  S  K  S  I  F  V  L  S  T  T  R  T  L  Y  V  G  Q  K  Q  K  G  T  F  Q  H  S  S  F  L  S  G  G  A  I  T  A  A  G  R  L  V  A  H  S  G  I   </first_frame>
            <second_frame>  F  P  L  F  L  C  C  I  L  Y  L  *  R  R  L  T  E  R  *  Q  *  *  E  Q  T  V  L  K  E  Q  S  Q  K  L  S  R  S  R  R  R  I  R  *  M  *  Q  I  A  S  L  *  N  L  C  Y  T  Q  H  C  H  S  K  I  W  F  K  F  K  I  L  L  W  P  F  L  N  L  L  S  C  F  H  P  D  L  F  V  N  S  M  L  Q  L  L  S  F  K  K  Y  T  R  V  T  G  L  E  E  I  *  L  I  V  L  L  L  *  K  N  Y   : G  G  R  H  *  I  L  Q  L  *  R  E  V  L  F  H  F  S  T  L  K  S  P  K  L  L  F  L  D  G  L  E  H  V  Q  E  L  L  R  L  E  K  D  C  P  K  M  K  K  L  K  N  W  L  C  S  I  G  *  K  L :   L  I  H  D  I  V  M  A  T  T  C  T  S  I  M  I  C  G  F  *  A  K  A  L  S  L  S  S  T   : G  W  T  L  E  M  G  K  K  *  T  S  R  N  V  Q  G  Q  N  C  T  I  N  A  S  S  I  S  D  Q :   R  S  G  N  H  M  K  *  S  L  R  M  G  S  L  Y  I  N  K  V  V  Y  Q  L  S  Q  *  R  V  P  S  R  Y  L  F  L  A  Q  Q  G  H  C  M  *  D  R  S  K  R  A  H  F  N  I  R  V  S  Y  Q  V  V  L  S  Q  Q  L  E  D  *  L  L  I  L  E  F  </second_frame>
            <third_frame>   F  L  C  S  C  V  V  S  Y  I  C  K  E  D  *  L  K  D  D  S  D  K  N  K  Q  F  *  R  N  R  V  R  N  Y  H  E  A  E  E  E  F  D  K  C  N  K  L  R  A  F  K  T  Y  A  T  H  N  I  V  I  Q  K  S  G  S  S  S  R  F  C  C  G  P  S  *  T  C  S  H  V  F  T  P  T  C  L  *  T  R  C  C  S  C  *  A  S  K  S  I  Q  E  L  Q  D  *  K  K  S  S  *  L  C  C  C  C  R  R  I  M  :  V  E  G  I  R  F  C  S  F  E  E  K  F  C  F  I  F  Q  R  *  K  A  R  N  C  C  F  S  M  G  *  S  T  Y  K  S  C  *  G  W  K  R  I  V  Q  R  *  K  S  S  K  I  G  S  A  A  L  A  R  S   : Y  *  S  T  T  S  L  W  P  Q  L  A  L  L  L  *  F  V  V  F  E  R  K  L  S  A  F  L  L  L  :  V  G  R  W  R  W  E  R  N  K  P  R  E  M  S  K  D  K  I  A  P  S  M  H  Q  V  S  R  T   : K  G  A  G  I  I  *  S  S  H  *  E  W  E  A  C  I  *  T  K  W  C  I  S  *  V  S  R  G  F  Q  V  D  I  C  S  *  H  N  K  D  I  V  C  R  T  E  A  K  G  H  I  S  T  F  E  F  P  I  R  W  C  Y  H  S  S  W  K  T  S  C  S  F  W  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0140K05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10825" stop="11132"/>
                    <exon start="11239" stop="11419"/>
                    <exon start="11508" stop="11596"/>
                    <exon start="11704" stop="11791"/>
                    <exon start="11894" stop="12118"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMTVIRTNSFKGTESETITKPKKNSINVTNCEPLKLMLHTTLSFKNLVQVQDSVVALPEPALMFSPRPVCELDAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNVEKPETAVSRWARARTRAAKVGKGLSKDEKAQKLALQHWLEAIDPRHRYGHNLHFYYDLWFLSESSQPFFYWLDVGDGKEINLEKCPRTKLHHQCIKYLGPKERESYEVVIENGKLVYKQSGVSVKSVEGSKSIFVLSTTRTLYVGQKQKGTFQHSSFLSGGAITAAGRLVAHSGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="12238" PGL_stop="12924"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12238" e_stop="12319"/>
            <exon e_start="12418" e_stop="12924"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12238" e_stop="12319" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12320" i_stop="12417" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="12418" e_stop="12924" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12238" stop="12319"/>
              <exon start="12418" stop="12924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12239" stop="12319"/>
              <exon start="12418" stop="12752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12252" stop="12319"/>
              <exon start="12418" stop="12620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACTATCACCCAACTGAAGAGAACTTCAAGGAGTTCATAAGCTTTCTTGAAGAACACAAAGTTGATCTTACAAATGTTAAG : AGATGTGCAGTTGATGACGACAATCTCTCAGAGGCATCAAACAGCCAACCATCTGTTGATCTTTCAATTGCTAAAGAATCTGAAGAAAGAAACACATCAGAATCCAAGAAACCAGAGGATGTCATCATCAATAAGAAAGCACAAACATTTAGCTTCTCCAAACATTTGTCAAGCAAATGGACAAGTGGAACTGGACCTCGTATTGGCTGTGTTAGGGATTACCCTACAGAACTACAATTCCGAGCACTTGAACAAGTTAATTTGTCGCCTCGGGTGGTCAATGGAGATTTCAACTTCTCTAGTCCAATCCCCTCACCAAGGCCAAGCCCAAACATTAGGCTATCACCTAGGATTGCACATATGGGACTACCGAGTCCCCGGACACCAATTTCTGTGCCTAACTAAGAAACATTCCAAACAAATGAAGTGACAGACCTCCTCGACTCCACACGGAAAATTAGCCCGCGGGAGGAACATACTAACTCAAATCTTCAACTTATTTGTTCA</gDNA_template>
            <first_frame> S  L  S  P  N  *  R  E  L  Q  G  V  H  K  L  S  *  R  T  Q  S  *  S  Y  K  C  *   : E  M  C  S  *  *  R  Q  S  L  R  G  I  K  Q  P  T  I  C  *  S  F  N  C  *  R  I  *  R  K  K  H  I  R  I  Q  E  T  R  G  C  H  H  Q  *  E  S  T  N  I  *  L  L  Q  T  F  V  K  Q  M  D  K  W  N  W  T  S  Y  W  L  C  *  G  L  P  Y  R  T  T  I  P  S  T  *  T  S  *  F  V  A  S  G  G  Q  W  R  F  Q  L  L  *  S  N  P  L  T  K  A  K  P  K  H  *  A  I  T  *  D  C  T  Y  G  T  T  E  S  P  D  T  N  F  C  A  *  L  R  N  I  P  N  K  *  S  D  R  P  P  R  L  H  T  E  N  *  P  A  G  G  T  Y  *  L  K  S  S  T  Y  L  F  </first_frame>
            <second_frame>  H  Y  H  P  T  E  E  N  F  K  E  F  I  S  F  L  E  E  H  K  V  D  L  T  N  V  K  :  R  C  A  V  D  D  D  N  L  S  E  A  S  N  S  Q  P  S  V  D  L  S  I  A  K  E  S  E  E  R  N  T  S  E  S  K  K  P  E  D  V  I  I  N  K  K  A  Q  T  F  S  F  S  K  H  L  S  S  K  W  T  S  G  T  G  P  R  I  G  C  V  R  D  Y  P  T  E  L  Q  F  R  A  L  E  Q  V  N  L  S  P  R  V  V  N  G  D  F  N  F  S  S  P  I  P  S  P  R  P  S  P  N  I  R  L  S  P  R  I  A  H  M  G  L  P  S  P  R  T  P  I  S  V  P  N  *  E  T  F  Q  T  N  E  V  T  D  L  L  D  S  T  R  K  I  S  P  R  E  E  H  T  N  S  N  L  Q  L  I  C  S </second_frame>
            <third_frame>   T  I  T  Q  L  K  R  T  S  R  S  S  *  A  F  L  K  N  T  K  L  I  L  Q  M  L  R :   D  V  Q  L  M  T  T  I  S  Q  R  H  Q  T  A  N  H  L  L  I  F  Q  L  L  K  N  L  K  K  E  T  H  Q  N  P  R  N  Q  R  M  S  S  S  I  R  K  H  K  H  L  A  S  P  N  I  C  Q  A  N  G  Q  V  E  L  D  L  V  L  A  V  L  G  I  T  L  Q  N  Y  N  S  E  H  L  N  K  L  I  C  R  L  G  W  S  M  E  I  S  T  S  L  V  Q  S  P  H  Q  G  Q  A  Q  T  L  G  Y  H  L  G  L  H  I  W  D  Y  R  V  P  G  H  Q  F  L  C  L  T  K  K  H  S  K  Q  M  K  *  Q  T  S  S  T  P  H  G  K  L  A  R  G  R  N  I  L  T  Q  I  F  N  L  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0140K05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12239" stop="12319"/>
                    <exon start="12418" stop="12822"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HYHPTEENFKEFISFLEEHKVDLTNVKRCAVDDDNLSEASNSQPSVDLSIAKESEERNTSESKKPEDVIINKKAQTFSFSKHLSSKWTSGTGPRIGCVRDYPTELQFRALEQVNLSPRVVNGDFNFSSPIPSPRPSPNIRLSPRIAHMGLPSPRTPISVPN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0140K05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12279" stop="12319"/>
                    <exon start="12418" stop="12847"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFLKNTKLILQMLRDVQLMTTISQRHQTANHLLIFQLLKNLKKETHQNPRNQRMSSSIRKHKHLASPNICQANGQVELDLVLAVLGITLQNYNSEHLNKLICRLGWSMEISTSLVQSPHQGQAQTLGYHLGLHIWDYRVPGHQFLCLTKKHSKQMK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12983" PGL_stop="12546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12983" e_stop="12546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="12983" e_stop="12546" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12983" stop="12546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212678" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCATAATCATGTCTTGTCTTATTTGAAAATCCAAATTCAATTGGAATACAAATATGAATGAACAAATAAGTTGAAGATTTGAGTTAGTATGTTCCTCCCGCGGGCTAATTTTCCGTGTGGAGTCGAGGAGGTCTGTCACTTCATTTGTTTGGAATGTTTCTTAGTTAGGCACAGAAATTGGTGTCCGGGGACTCGGTAGTCCCATATGTGCAATCCTAGGTGATAGCCTAATGTTTGGGCTTGGCCTTGGTGAGGGGATTGGACTAGAGAAGTTGAAATCTCCATTGACCACCCGAGGCGACAAATTAACTTGTTCAAGTGCTCGGAATTGTAGTTCTGTAGGGTAATCCCTAACACAGCCAATACGAGGTCCAGTTCCACTTGTCCATTTGCTTGACAAATGTTTGGAGAAGCTAAATGTTTGTGCTTTCTTATTG</gDNA_template>
            <first_frame> T  I  I  M  S  C  L  I  *  K  S  K  F  N  W  N  T  N  M  N  E  Q  I  S  *  R  F  E  L  V  C  S  S  R  G  L  I  F  R  V  E  S  R  R  S  V  T  S  F  V  W  N  V  S  *  L  G  T  E  I  G  V  R  G  L  G  S  P  I  C  A  I  L  G  D  S  L  M  F  G  L  G  L  G  E  G  I  G  L  E  K  L  K  S  P  L  T  T  R  G  D  K  L  T  C  S  S  A  R  N  C  S  S  V  G  *  S  L  T  Q  P  I  R  G  P  V  P  L  V  H  L  L  D  K  C  L  E  K  L  N  V  C  A  F  L  L </first_frame>
            <second_frame>  P  *  S  C  L  V  L  F  E  N  P  N  S  I  G  I  Q  I  *  M  N  K  *  V  E  D  L  S  *  Y  V  P  P  A  G  *  F  S  V  W  S  R  G  G  L  S  L  H  L  F  G  M  F  L  S  *  A  Q  K  L  V  S  G  D  S  V  V  P  Y  V  Q  S  *  V  I  A  *  C  L  G  L  A  L  V  R  G  L  D  *  R  S  *  N  L  H  *  P  P  E  A  T  N  *  L  V  Q  V  L  G  I  V  V  L  *  G  N  P  *  H  S  Q  Y  E  V  Q  F  H  L  S  I  C  L  T  N  V  W  R  S  *  M  F  V  L  S  Y   </second_frame>
            <third_frame>   H  N  H  V  L  S  Y  L  K  I  Q  I  Q  L  E  Y  K  Y  E  *  T  N  K  L  K  I  *  V  S  M  F  L  P  R  A  N  F  P  C  G  V  E  E  V  C  H  F  I  C  L  E  C  F  L  V  R  H  R  N  W  C  P  G  T  R  *  S  H  M  C  N  P  R  *  *  P  N  V  W  A  W  P  W  *  G  D  W  T  R  E  V  E  I  S  I  D  H  P  R  R  Q  I  N  L  F  K  C  S  E  L  *  F  C  R  V  I  P  N  T  A  N  T  R  S  S  S  T  C  P  F  A  *  Q  M  F  G  E  A  K  C  L  C  F  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0140K05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="83008" PGL_stop="83926"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83008" e_stop="83496"/>
            <exon e_start="83731" e_stop="83926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="83008" e_stop="83496" e_length="489"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83497" i_stop="83730" i_length="234"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83731" e_stop="83926" e_length="196"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83008" stop="83468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83074" stop="83496"/>
              <exon start="83731" stop="83902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83075" stop="83496"/>
              <exon start="83731" stop="83926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGGATACAAATGGCAAGATGGTCTGAAACGGTCCGTTACACATTGCTTTTAGTTATTTGCTCAGTTTTCCACACACCTCTGAGCTCACCGCTTCACCCAACTATATATAGAAACCCAATTCTGTAATCAACAAATGGAAGAGGAGAAAACTATGTTGATTGATGTGAATGAGAAAGAGATGAATGTTAATGGTGGAGTAGTAGTAGAGGTGAAAGAAGAACCAGTTATATTTATTAATGATGAAGATGACATTATTGGGGATTCAGTACCAAAGCCTTTGGATGGGTTGCGTGATGTAGGTCCACCTCCGTTTTTGAAGAAGACGTTTGAAATGGTGGATGATCCAAATACCGACTCTATAATCTCATGGAGTAACAGTCAAAACAGCTTTGTTGTTTGGGATCCTCACAAATTTTCAATTCATCTTCTACCTAAACATTTTAAGCACAACAACTTCTCTAGCTTTATCCGCCAGCTCAATACCTAT : CGTTTCAGGAAAATTGATTCAGATAGATGGGAATTTGCAAATGAGGGTTTTCAGAAAGGGAAAAAGCATTTGCTGATAAATATCAAGAGAAGAAAGCAGTATCCTCAACTAGGAGGAGGAGGTGGTGGAGGAGCAAAATCTTGGGTAGGAGGTTGTTGCAAGGATGGAACTGAAGCAGCAGAGATAGAAAAGCTGA</gDNA_template>
            <first_frame> K  G  Y  K  W  Q  D  G  L  K  R  S  V  T  H  C  F  *  L  F  A  Q  F  S  T  H  L  *  A  H  R  F  T  Q  L  Y  I  E  T  Q  F  C  N  Q  Q  M  E  E  E  K  T  M  L  I  D  V  N  E  K  E  M  N  V  N  G  G  V  V  V  E  V  K  E  E  P  V  I  F  I  N  D  E  D  D  I  I  G  D  S  V  P  K  P  L  D  G  L  R  D  V  G  P  P  P  F  L  K  K  T  F  E  M  V  D  D  P  N  T  D  S  I  I  S  W  S  N  S  Q  N  S  F  V  V  W  D  P  H  K  F  S  I  H  L  L  P  K  H  F  K  H  N  N  F  S  S  F  I  R  Q  L  N  T  Y  :  R  F  R  K  I  D  S  D  R  W  E  F  A  N  E  G  F  Q  K  G  K  K  H  L  L  I  N  I  K  R  R  K  Q  Y  P  Q  L  G  G  G  G  G  G  G  A  K  S  W  V  G  G  C  C  K  D  G  T  E  A  A  E  I  E  K  L  </first_frame>
            <second_frame>  K  D  T  N  G  K  M  V  *  N  G  P  L  H  I  A  F  S  Y  L  L  S  F  P  H  T  S  E  L  T  A  S  P  N  Y  I  *  K  P  N  S  V  I  N  K  W  K  R  R  K  L  C  *  L  M  *  M  R  K  R  *  M  L  M  V  E  *  *  *  R  *  K  K  N  Q  L  Y  L  L  M  M  K  M  T  L  L  G  I  Q  Y  Q  S  L  W  M  G  C  V  M  *  V  H  L  R  F  *  R  R  R  L  K  W  W  M  I  Q  I  P  T  L  *  S  H  G  V  T  V  K  T  A  L  L  F  G  I  L  T  N  F  Q  F  I  F  Y  L  N  I  L  S  T  T  T  S  L  A  L  S  A  S  S  I  P  I :   V  S  G  K  L  I  Q  I  D  G  N  L  Q  M  R  V  F  R  K  G  K  S  I  C  *  *  I  S  R  E  E  S  S  I  L  N  *  E  E  E  V  V  E  E  Q  N  L  G  *  E  V  V  A  R  M  E  L  K  Q  Q  R  *  K  S  * </second_frame>
            <third_frame>   R  I  Q  M  A  R  W  S  E  T  V  R  Y  T  L  L  L  V  I  C  S  V  F  H  T  P  L  S  S  P  L  H  P  T  I  Y  R  N  P  I  L  *  S  T  N  G  R  G  E  N  Y  V  D  *  C  E  *  E  R  D  E  C  *  W  W  S  S  S  R  G  E  R  R  T  S  Y  I  Y  *  *  *  R  *  H  Y  W  G  F  S  T  K  A  F  G  W  V  A  *  C  R  S  T  S  V  F  E  E  D  V  *  N  G  G  *  S  K  Y  R  L  Y  N  L  M  E  *  Q  S  K  Q  L  C  C  L  G  S  S  Q  I  F  N  S  S  S  T  *  T  F  *  A  Q  Q  L  L  *  L  Y  P  P  A  Q  Y  L   : S  F  Q  E  N  *  F  R  *  M  G  I  C  K  *  G  F  S  E  R  E  K  A  F  A  D  K  Y  Q  E  K  K  A  V  S  S  T  R  R  R  R  W  W  R  S  K  I  L  G  R  R  L  L  Q  G  W  N  *  S  S  R  D  R  K  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0140K05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83092" stop="83496"/>
                    <exon start="83731" stop="83925"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHRFTQLYIETQFCNQQMEEEKTMLIDVNEKEMNVNGGVVVEVKEEPVIFINDEDDIIGDSVPKPLDGLRDVGPPPFLKKTFEMVDDPNTDSIISWSNSQNSFVVWDPHKFSIHLLPKHFKHNNFSSFIRQLNTYRFRKIDSDRWEFANEGFQKGKKHLLINIKRRKQYPQLGGGGGGGAKSWVGGCCKDGTEAAEIEKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="84009" PGL_stop="84668"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84009" e_stop="84668"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="84009" e_stop="84668" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84009" stop="84668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392002" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGAGAGGTTACAGAATAGTGAGATTAAACAAAAGTATATGGTGATCTTCCTGGCGAAAACGTTCCACAACCCTATGTTTGTTCAACATCTGATTGAAAAGGTGAAACAGGGGAAGACAACAACGGTTGAGAATGGGACCAAGAAGAGAAGGTTGTGTAGTGATGAAAATCAAGAGGAGTACACAACAATTAAGTCGGAGATACAAACACTCTTCTCTTGTGATGAATCGTCGAATAGTCCAGTTGAGGAACAAAAAGGCAAGGGAAATAACAGCAGCCCGGAGATGGTATCTGAGAACTATATATTGTGGGAGAAGTTGATGGAGGATGACATGATTTGTGAGAATGGAGCAGAAACAGATAAGTATCAAAGTGAGATTGTTCTTGAACTAGAGGATTTGATCTCGAACCCATCCGAGTGCAAGTGTATGCCTTAAATGAGCGAGAGTTAGGATGGTCCAACAGATAGCTAGCTTAAGAAAATCACAATGAATGTTTTATCAGTTGGTAGTAACTAACAATGTATAAAGGTTTTTACAGAAGATGAAGAAAATTAAGTAGTTTGATAGGGGTTTGGTGAAGAGGAGAATATTGTAGAACAAGAATATGAATGTTAGTTTCATGCATAGTATTAGTAAATATAATATGGTCTTTTCTT</gDNA_template>
            <first_frame> E  G  E  V  T  E  *  *  D  *  T  K  V  Y  G  D  L  P  G  E  N  V  P  Q  P  Y  V  C  S  T  S  D  *  K  G  E  T  G  E  D  N  N  G  *  E  W  D  Q  E  E  K  V  V  *  *  *  K  S  R  G  V  H  N  N  *  V  G  D  T  N  T  L  L  L  *  *  I  V  E  *  S  S  *  G  T  K  R  Q  G  K  *  Q  Q  P  G  D  G  I  *  E  L  Y  I  V  G  E  V  D  G  G  *  H  D  L  *  E  W  S  R  N  R  *  V  S  K  *  D  C  S  *  T  R  G  F  D  L  E  P  I  R  V  Q  V  Y  A  L  N  E  R  E  L  G  W  S  N  R  *  L  A  *  E  N  H  N  E  C  F  I  S  W  *  *  L  T  M  Y  K  G  F  Y  R  R  *  R  K  L  S  S  L  I  G  V  W  *  R  G  E  Y  C  R  T  R  I  *  M  L  V  S  C  I  V  L  V  N  I  I  W  S  F  L </first_frame>
            <second_frame>  K  E  R  L  Q  N  S  E  I  K  Q  K  Y  M  V  I  F  L  A  K  T  F  H  N  P  M  F  V  Q  H  L  I  E  K  V  K  Q  G  K  T  T  T  V  E  N  G  T  K  K  R  R  L  C  S  D  E  N  Q  E  E  Y  T  T  I  K  S  E  I  Q  T  L  F  S  C  D  E  S  S  N  S  P  V  E  E  Q  K  G  K  G  N  N  S  S  P  E  M  V  S  E  N  Y  I  L  W  E  K  L  M  E  D  D  M  I  C  E  N  G  A  E  T  D  K  Y  Q  S  E  I  V  L  E  L  E  D  L  I  S  N  P  S  E  C  K  C  M  P  *  M  S  E  S  *  D  G  P  T  D  S  *  L  K  K  I  T  M  N  V  L  S  V  G  S  N  *  Q  C  I  K  V  F  T  E  D  E  E  N  *  V  V  *  *  G  F  G  E  E  E  N  I  V  E  Q  E  Y  E  C  *  F  H  A  *  Y  *  *  I  *  Y  G  L  F   </second_frame>
            <third_frame>   R  R  G  Y  R  I  V  R  L  N  K  S  I  W  *  S  S  W  R  K  R  S  T  T  L  C  L  F  N  I  *  L  K  R  *  N  R  G  R  Q  Q  R  L  R  M  G  P  R  R  E  G  C  V  V  M  K  I  K  R  S  T  Q  Q  L  S  R  R  Y  K  H  S  S  L  V  M  N  R  R  I  V  Q  L  R  N  K  K  A  R  E  I  T  A  A  R  R  W  Y  L  R  T  I  Y  C  G  R  S  *  W  R  M  T  *  F  V  R  M  E  Q  K  Q  I  S  I  K  V  R  L  F  L  N  *  R  I  *  S  R  T  H  P  S  A  S  V  C  L  K  *  A  R  V  R  M  V  Q  Q  I  A  S  L  R  K  S  Q  *  M  F  Y  Q  L  V  V  T  N  N  V  *  R  F  L  Q  K  M  K  K  I  K  *  F  D  R  G  L  V  K  R  R  I  L  *  N  K  N  M  N  V  S  F  M  H  S  I  S  K  Y  N  M  V  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0140K05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84010" stop="84447"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KERLQNSEIKQKYMVIFLAKTFHNPMFVQHLIEKVKQGKTTTVENGTKKRRLCSDENQEEYTTIKSEIQTLFSCDESSNSPVEEQKGKGNNSSPEMVSENYILWEKLMEDDMICENGAETDKYQSEIVLELEDLISNPSECKCMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="84633" PGL_stop="84041"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84633" e_stop="84041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84633" e_stop="84041" e_length="593"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84633" stop="84041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84633" stop="84119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84633" stop="84135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84633" stop="84135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAAACTAACATTCATATTCTTGTTCTACAATATTCTCCTCTTCACCAAACCCCTATCAAACTACTTAATTTTCTTCATCTTCTGTAAAAACCTTTATACATTGTTAGTTACTACCAACTGATAAAACATTCATTGTGATTTTCTTAAGCTAGCTATCTGTTGGACCATCCTAACTCTCGCTCATTTAAGGCATACACTTGCACTCGGATGGGTTCGAGATCAAATCCTCTAGTTCAAGAACAATCTCACTTTGATACTTATCTGTTTCTGCTCCATTCTCACAAATCATGTCATCCTCCATCAACTTCTCCCACAATATATAGTTCTCAGATACCATCTCCGGGCTGCTGTTATTTCCCTTGCCTTTTTGTTCCTCAACTGGACTATTCGACGATTCATCACAAGAGAAGAGTGTTTGTATCTCCGACTTAATTGTTGTGTACTCCTCTTGATTTTCATCACTACACAACCTTCTCTTCTTGGTCCCATTCTCAACCGTTGTTGTCTTCCCCTGTTTCACCTTTTCAATCAGATGTTGAACAAACATAGGGTTGTGGAACGTTTTCGCCAGGAAGATCACCATATACTTTT</gDNA_template>
            <first_frame> M  K  L  T  F  I  F  L  F  Y  N  I  L  L  F  T  K  P  L  S  N  Y  L  I  F  F  I  F  C  K  N  L  Y  T  L  L  V  T  T  N  *  *  N  I  H  C  D  F  L  K  L  A  I  C  W  T  I  L  T  L  A  H  L  R  H  T  L  A  L  G  W  V  R  D  Q  I  L  *  F  K  N  N  L  T  L  I  L  I  C  F  C  S  I  L  T  N  H  V  I  L  H  Q  L  L  P  Q  Y  I  V  L  R  Y  H  L  R  A  A  V  I  S  L  A  F  L  F  L  N  W  T  I  R  R  F  I  T  R  E  E  C  L  Y  L  R  L  N  C  C  V  L  L  L  I  F  I  T  T  Q  P  S  L  L  G  P  I  L  N  R  C  C  L  P  L  F  H  L  F  N  Q  M  L  N  K  H  R  V  V  E  R  F  R  Q  E  D  H  H  I  L   </first_frame>
            <second_frame>  *  N  *  H  S  Y  S  C  S  T  I  F  S  S  S  P  N  P  Y  Q  T  T  *  F  S  S  S  S  V  K  T  F  I  H  C  *  L  L  P  T  D  K  T  F  I  V  I  F  L  S  *  L  S  V  G  P  S  *  L  S  L  I  *  G  I  H  L  H  S  D  G  F  E  I  K  S  S  S  S  R  T  I  S  L  *  Y  L  S  V  S  A  P  F  S  Q  I  M  S  S  S  I  N  F  S  H  N  I  *  F  S  D  T  I  S  G  L  L  L  F  P  L  P  F  C  S  S  T  G  L  F  D  D  S  S  Q  E  K  S  V  C  I  S  D  L  I  V  V  Y  S  S  *  F  S  S  L  H  N  L  L  F  L  V  P  F  S  T  V  V  V  F  P  C  F  T  F  S  I  R  C  *  T  N  I  G  L  W  N  V  F  A  R  K  I  T  I  Y  F  </second_frame>
            <third_frame>   E  T  N  I  H  I  L  V  L  Q  Y  S  P  L  H  Q  T  P  I  K  L  L  N  F  L  H  L  L  *  K  P  L  Y  I  V  S  Y  Y  Q  L  I  K  H  S  L  *  F  S  *  A  S  Y  L  L  D  H  P  N  S  R  S  F  K  A  Y  T  C  T  R  M  G  S  R  S  N  P  L  V  Q  E  Q  S  H  F  D  T  Y  L  F  L  L  H  S  H  K  S  C  H  P  P  S  T  S  P  T  I  Y  S  S  Q  I  P  S  P  G  C  C  Y  F  P  C  L  F  V  P  Q  L  D  Y  S  T  I  H  H  K  R  R  V  F  V  S  P  T  *  L  L  C  T  P  L  D  F  H  H  Y  T  T  F  S  S  W  S  H  S  Q  P  L  L  S  S  P  V  S  P  F  Q  S  D  V  E  Q  T  *  G  C  G  T  F  S  P  G  R  S  P  Y  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0140K05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84399" stop="84043"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKNNLTLILICFCSILTNHVILHQLLPQYIVLRYHLRAAVISLAFLFLNWTIRRFITREECLYLRLNCCVLLLIFITTQPSLLGPILNRCCLPLFHLFNQMLNKHRVVERFRQEDHHIL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0140K05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84484" stop="84200"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASYLLDHPNSRSFKAYTCTRMGSRSNPLVQEQSHFDTYLFLLHSHKSCHPPSTSPTIYSSQIPSPGCCYFPCLFVPQLDYSTIHHKRRVFVSPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="92101" PGL_stop="87191"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92101" e_stop="92066"/>
            <exon e_start="88339" e_stop="88139"/>
            <exon e_start="87731" e_stop="87191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.456" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.835" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92101" e_stop="92066" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.456">
            <gDNA_intron_boundary i_start="92065" i_stop="88340" i_length="3726"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88339" e_stop="88139" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.835">
            <gDNA_intron_boundary i_start="88138" i_stop="87732" i_length="407"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="87731" e_stop="87191" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92101" stop="92066"/>
              <exon start="88339" stop="88139"/>
              <exon start="87731" stop="87293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87731" stop="87191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGCGTATGAAGCTGTTATACCTTGAAAATAGAG : TTGGTCTGGCTAAACTCCTTTTTCCCATGGAAGCAAAAGTTGCAATGGACATTGCACAAGTTGATGGCACGTCTGAATTACCCCTGGCTAGCATGAGGAAGAAGATAGCTGATGCACAGAGGACAACAGTGGATTTGAACGAGGCTCCTTTCAAGATGAAAGAGGAGCACTTGAATCGGCTTAGGGCTCTCTCTAGAACTG : TGGAACTTGGAAAACGGTTCTTTCCACGTTGTTCAGAAGTTCTAAATAAGATCATGGATGCTGATGACTTGTCTGAGATAGCTTACATGGGGAATGATACAGTAGAAGAGCGTCAACTGAAGAAGCAAAGGTACATGGAACTTCAAGAAATTTTGTCTAAAGCATTCACGGAGGATAAAGAAGAATTTGCTAAGACTAACATGTCCTCATCTTGTTCCTCTACATCTAAGGGAGTAGATAAGCCCAATAATCTCCCATTTAGGAAATAGATTTTGTATTAGGACATATGAGGAAGAAACACAGGACTCTCTTTCTTTTTCATCATTTGATGCATACAAAACACATGTACCATAAACTTGTATTGTGAAAAAAAGATAAAATTTCATTATTAGTTGAGAAGCAATCATTTGAAAGTGAAAAAAAACAAAATGGCCCACCTAGAAGATAAGATATGTAACAATTGTTAATAGTATTATTATTATTATTATTATGAGTTAAATGACTAATAATTGTGGATTTTGTGGCTCTAACTTAAGCTACC</gDNA_template>
            <first_frame> I  C  V  *  S  C  Y  T  L  K  I  E  :  L  V  W  L  N  S  F  F  P  W  K  Q  K  L  Q  W  T  L  H  K  L  M  A  R  L  N  Y  P  W  L  A  *  G  R  R  *  L  M  H  R  G  Q  Q  W  I  *  T  R  L  L  S  R  *  K  R  S  T  *  I  G  L  G  L  S  L  E  L  :  W  N  L  E  N  G  S  F  H  V  V  Q  K  F  *  I  R  S  W  M  L  M  T  C  L  R  *  L  T  W  G  M  I  Q  *  K  S  V  N  *  R  S  K  G  T  W  N  F  K  K  F  C  L  K  H  S  R  R  I  K  K  N  L  L  R  L  T  C  P  H  L  V  P  L  H  L  R  E  *  I  S  P  I  I  S  H  L  G  N  R  F  C  I  R  T  Y  E  E  E  T  Q  D  S  L  S  F  S  S  F  D  A  Y  K  T  H  V  P  *  T  C  I  V  K  K  R  *  N  F  I  I  S  *  E  A  I  I  *  K  *  K  K  T  K  W  P  T  *  K  I  R  Y  V  T  I  V  N  S  I  I  I  I  I  I  M  S  *  M  T  N  N  C  G  F  C  G  S  N  L  S  Y  </first_frame>
            <second_frame>  F  A  Y  E  A  V  I  P  *  K  *  S :   W  S  G  *  T  P  F  S  H  G  S  K  S  C  N  G  H  C  T  S  *  W  H  V  *  I  T  P  G  *  H  E  E  E  D  S  *  C  T  E  D  N  S  G  F  E  R  G  S  F  Q  D  E  R  G  A  L  E  S  A  *  G  S  L  *  N  C :   G  T  W  K  T  V  L  S  T  L  F  R  S  S  K  *  D  H  G  C  *  *  L  V  *  D  S  L  H  G  E  *  Y  S  R  R  A  S  T  E  E  A  K  V  H  G  T  S  R  N  F  V  *  S  I  H  G  G  *  R  R  I  C  *  D  *  H  V  L  I  L  F  L  Y  I  *  G  S  R  *  A  Q  *  S  P  I  *  E  I  D  F  V  L  G  H  M  R  K  K  H  R  T  L  F  L  F  H  H  L  M  H  T  K  H  M  Y  H  K  L  V  L  *  K  K  D  K  I  S  L  L  V  E  K  Q  S  F  E  S  E  K  K  Q  N  G  P  P  R  R  *  D  M  *  Q  L  L  I  V  L  L  L  L  L  L  *  V  K  *  L  I  I  V  D  F  V  A  L  T  *  A  T </second_frame>
            <third_frame>   L  R  M  K  L  L  Y  L  E  N  R   : V  G  L  A  K  L  L  F  P  M  E  A  K  V  A  M  D  I  A  Q  V  D  G  T  S  E  L  P  L  A  S  M  R  K  K  I  A  D  A  Q  R  T  T  V  D  L  N  E  A  P  F  K  M  K  E  E  H  L  N  R  L  R  A  L  S  R  T   : V  E  L  G  K  R  F  F  P  R  C  S  E  V  L  N  K  I  M  D  A  D  D  L  S  E  I  A  Y  M  G  N  D  T  V  E  E  R  Q  L  K  K  Q  R  Y  M  E  L  Q  E  I  L  S  K  A  F  T  E  D  K  E  E  F  A  K  T  N  M  S  S  S  C  S  S  T  S  K  G  V  D  K  P  N  N  L  P  F  R  K  *  I  L  Y  *  D  I  *  G  R  N  T  G  L  S  F  F  F  I  I  *  C  I  Q  N  T  C  T  I  N  L  Y  C  E  K  K  I  K  F  H  Y  *  L  R  S  N  H  L  K  V  K  K  N  K  M  A  H  L  E  D  K  I  C  N  N  C  *  *  Y  Y  Y  Y  Y  Y  Y  E  L  N  D  *  *  L  W  I  L  W  L  *  L  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0140K05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92099" stop="92066"/>
                    <exon start="88339" stop="88139"/>
                    <exon start="87731" stop="87463"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRMKLLYLENRVGLAKLLFPMEAKVAMDIAQVDGTSELPLASMRKKIADAQRTTVDLNEAPFKMKEEHLNRLRALSRTVELGKRFFPRCSEVLNKIMDADDLSEIAYMGNDTVEERQLKKQRYMELQEILSKAFTEDKEEFAKTNMSSSCSSTSKGVDKPNNLPFRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="102649" PGL_stop="92724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102649" e_stop="101970"/>
            <exon e_start="92813" e_stop="92724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.997"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="102649" e_stop="101970" e_length="680"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101969" i_stop="92814" i_length="9156"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="92813" e_stop="92724" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102649" stop="102187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102595" stop="101970"/>
              <exon start="92813" stop="92758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102595" stop="102333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102413" stop="101970"/>
              <exon start="92813" stop="92724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251135" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCTCCTCTTCTTCTCTGTCCCTTTTCCTCCCCCAATTCATCATATAATTCCTAACTAGCTAACAACCCCTTGTTCAATTTCTTTTCTCTCCCCAAATTCAATGGCTCTTTCTTCCAAATGATCCCTCTATTCCATTCCCCCTTTCTCCCATGAACGTATGCTCTAATGGATAGTAGAACTGCTTTTTCGGATTCCAATGATATTAGTGGAAGCAGTAGTATATGCTGCATGAACGAATCGGAAACTTCACTGGCAGACGTCAATTCCCTCAAACGTCTATCAGAAACACTAGAGTCTATCTTCGATGCGTCTGCGCCGGATTTCGACTTCTTCGCTGATGCTAAGCTTCTGGCTCCAGGCGGTAAGGAAATTCCGGTGCATCGGTGCATTTTGTCGGCGAGGAGTCCTTTTTTTAAGAATGTATTCTGTGGGAAAGATAGCAACACGAAGCTGGAACTCAAAGAGCTGATGAAAGAGTATGAGGTGAGTTTTGATGCCGTGGTCAGTGTGCTCGCCTATTTGTATAGTGGAAAAGTTAGGCCTGCATCTAAAGATGTGTGTGTTTGTGTGGACAATGAGTGCTTGCATGTAGCTTGTAGGCCAGCTGTGGCCTTCATGGTTCAGGTTTTGTACGCATCCTTTACCTTTCAGATCTCTCAATTGGTCGACAAGTTTCAG : AGACACCTATTGGATATTCTTGACAAAGCTGTAGCAGATGATGTAATGATGGTTTTATCCGTTGCAAACATTTGCGGTAAAGCATGTGAA</gDNA_template>
            <first_frame> F  L  L  F  F  S  V  P  F  P  P  P  I  H  H  I  I  P  N  *  L  T  T  P  C  S  I  S  F  L  S  P  N  S  M  A  L  S  S  K  *  S  L  Y  S  I  P  P  F  S  H  E  R  M  L  *  W  I  V  E  L  L  F  R  I  P  M  I  L  V  E  A  V  V  Y  A  A  *  T  N  R  K  L  H  W  Q  T  S  I  P  S  N  V  Y  Q  K  H  *  S  L  S  S  M  R  L  R  R  I  S  T  S  S  L  M  L  S  F  W  L  Q  A  V  R  K  F  R  C  I  G  A  F  C  R  R  G  V  L  F  L  R  M  Y  S  V  G  K  I  A  T  R  S  W  N  S  K  S  *  *  K  S  M  R  *  V  L  M  P  W  S  V  C  S  P  I  C  I  V  E  K  L  G  L  H  L  K  M  C  V  F  V  W  T  M  S  A  C  M  *  L  V  G  Q  L  W  P  S  W  F  R  F  C  T  H  P  L  P  F  R  S  L  N  W  S  T  S  F  R :   D  T  Y  W  I  F  L  T  K  L  *  Q  M  M  *  *  W  F  Y  P  L  Q  T  F  A  V  K  H  V   </first_frame>
            <second_frame>  S  S  S  S  S  L  S  L  F  L  P  Q  F  I  I  *  F  L  T  S  *  Q  P  L  V  Q  F  L  F  S  P  Q  I  Q  W  L  F  L  P  N  D  P  S  I  P  F  P  L  S  P  M  N  V  C  S  N  G  *  *  N  C  F  F  G  F  Q  *  Y  *  W  K  Q  *  Y  M  L  H  E  R  I  G  N  F  T  G  R  R  Q  F  P  Q  T  S  I  R  N  T  R  V  Y  L  R  C  V  C  A  G  F  R  L  L  R  *  C  *  A  S  G  S  R  R  *  G  N  S  G  A  S  V  H  F  V  G  E  E  S  F  F  *  E  C  I  L  W  E  R  *  Q  H  E  A  G  T  Q  R  A  D  E  R  V  *  G  E  F  *  C  R  G  Q  C  A  R  L  F  V  *  W  K  S  *  A  C  I  *  R  C  V  C  L  C  G  Q  *  V  L  A  C  S  L  *  A  S  C  G  L  H  G  S  G  F  V  R  I  L  Y  L  S  D  L  S  I  G  R  Q  V  S   : E  T  P  I  G  Y  S  *  Q  S  C  S  R  *  C  N  D  G  F  I  R  C  K  H  L  R  *  S  M  *  </second_frame>
            <third_frame>   P  P  L  L  L  C  P  F  S  S  P  N  S  S  Y  N  S  *  L  A  N  N  P  L  F  N  F  F  S  L  P  K  F  N  G  S  F  F  Q  M  I  P  L  F  H  S  P  F  L  P  *  T  Y  A  L  M  D  S  R  T  A  F  S  D  S  N  D  I  S  G  S  S  S  I  C  C  M  N  E  S  E  T  S  L  A  D  V  N  S  L  K  R  L  S  E  T  L  E  S  I  F  D  A  S  A  P  D  F  D  F  F  A  D  A  K  L  L  A  P  G  G  K  E  I  P  V  H  R  C  I  L  S  A  R  S  P  F  F  K  N  V  F  C  G  K  D  S  N  T  K  L  E  L  K  E  L  M  K  E  Y  E  V  S  F  D  A  V  V  S  V  L  A  Y  L  Y  S  G  K  V  R  P  A  S  K  D  V  C  V  C  V  D  N  E  C  L  H  V  A  C  R  P  A  V  A  F  M  V  Q  V  L  Y  A  S  F  T  F  Q  I  S  Q  L  V  D  K  F  Q  :  R  H  L  L  D  I  L  D  K  A  V  A  D  D  V  M  M  V  L  S  V  A  N  I  C  G  K  A  C  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0140K05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102494" stop="101970"/>
                    <exon start="92813" stop="92724"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYALMDSRTAFSDSNDISGSSSICCMNESETSLADVNSLKRLSETLESIFDASAPDFDFFADAKLLAPGGKEIPVHRCILSARSPFFKNVFCGKDSNTKLELKELMKEYEVSFDAVVSVLAYLYSGKVRPASKDVCVCVDNECLHVACRPAVAFMVQVLYASFTFQISQLVDKFQRHLLDILDKAVADDVMMVLSVANICGKACE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="102649" e_stop="102165"/>
            <exon e_start="92813" e_stop="92770"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.597" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102649" e_stop="102165" e_length="485"/>
          </exon>
          <intron i_serial="1" don_prob="0.597" acc_prob="0.998">
            <gDNA_intron_boundary i_start="102164" i_stop="92814" i_length="9351"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92813" e_stop="92770" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102649" stop="102187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102643" stop="102165"/>
              <exon start="92813" stop="92770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102595" stop="102333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCTCCTCTTCTTCTCTGTCCCTTTTCCTCCCCCAATTCATCATATAATTCCTAACTAGCTAACAACCCCTTGTTCAATTTCTTTTCTCTCCCCAAATTCAATGGCTCTTTCTTCCAAATGATCCCTCTATTCCATTCCCCCTTTCTCCCATGAACGTATGCTCTAATGGATAGTAGAACTGCTTTTTCGGATTCCAATGATATTAGTGGAAGCAGTAGTATATGCTGCATGAACGAATCGGAAACTTCACTGGCAGACGTCAATTCCCTCAAACGTCTATCAGAAACACTAGAGTCTATCTTCGATGCGTCTGCGCCGGATTTCGACTTCTTCGCTGATGCTAAGCTTCTGGCTCCAGGCGGTAAGGAAATTCCGGTGCATCGGTGCATTTTGTCGGCGAGGAGTCCTTTTTTTAAGAATGTATTCTGTGGGAAAGATAGCAACACGAAGCTGGAACTCAAAGAGCTGATGAAAGAGTATGAG : AGACACCTATTGGATATTCTTGACAAAGCTGTAGCAGATGATGT</gDNA_template>
            <first_frame> F  L  L  F  F  S  V  P  F  P  P  P  I  H  H  I  I  P  N  *  L  T  T  P  C  S  I  S  F  L  S  P  N  S  M  A  L  S  S  K  *  S  L  Y  S  I  P  P  F  S  H  E  R  M  L  *  W  I  V  E  L  L  F  R  I  P  M  I  L  V  E  A  V  V  Y  A  A  *  T  N  R  K  L  H  W  Q  T  S  I  P  S  N  V  Y  Q  K  H  *  S  L  S  S  M  R  L  R  R  I  S  T  S  S  L  M  L  S  F  W  L  Q  A  V  R  K  F  R  C  I  G  A  F  C  R  R  G  V  L  F  L  R  M  Y  S  V  G  K  I  A  T  R  S  W  N  S  K  S  *  *  K  S  M  R :   D  T  Y  W  I  F  L  T  K  L  *  Q  M  M  </first_frame>
            <second_frame>  S  S  S  S  S  L  S  L  F  L  P  Q  F  I  I  *  F  L  T  S  *  Q  P  L  V  Q  F  L  F  S  P  Q  I  Q  W  L  F  L  P  N  D  P  S  I  P  F  P  L  S  P  M  N  V  C  S  N  G  *  *  N  C  F  F  G  F  Q  *  Y  *  W  K  Q  *  Y  M  L  H  E  R  I  G  N  F  T  G  R  R  Q  F  P  Q  T  S  I  R  N  T  R  V  Y  L  R  C  V  C  A  G  F  R  L  L  R  *  C  *  A  S  G  S  R  R  *  G  N  S  G  A  S  V  H  F  V  G  E  E  S  F  F  *  E  C  I  L  W  E  R  *  Q  H  E  A  G  T  Q  R  A  D  E  R  V  *   : E  T  P  I  G  Y  S  *  Q  S  C  S  R  *  C </second_frame>
            <third_frame>   P  P  L  L  L  C  P  F  S  S  P  N  S  S  Y  N  S  *  L  A  N  N  P  L  F  N  F  F  S  L  P  K  F  N  G  S  F  F  Q  M  I  P  L  F  H  S  P  F  L  P  *  T  Y  A  L  M  D  S  R  T  A  F  S  D  S  N  D  I  S  G  S  S  S  I  C  C  M  N  E  S  E  T  S  L  A  D  V  N  S  L  K  R  L  S  E  T  L  E  S  I  F  D  A  S  A  P  D  F  D  F  F  A  D  A  K  L  L  A  P  G  G  K  E  I  P  V  H  R  C  I  L  S  A  R  S  P  F  F  K  N  V  F  C  G  K  D  S  N  T  K  L  E  L  K  E  L  M  K  E  Y  E  :  R  H  L  L  D  I  L  D  K  A  V  A  D  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0140K05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102494" stop="102165"/>
                    <exon start="92813" stop="92772"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYALMDSRTAFSDSNDISGSSSICCMNESETSLADVNSLKRLSETLESIFDASAPDFDFFADAKLLAPGGKEIPVHRCILSARSPFFKNVFCGKDSNTKLELKELMKEYERHLLDILDKAVADD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 126 chains have been computed
$ 
$ memory statistics:
$ 60416 bytes spliced alignments in total
$ 28 spliced alignments have been stored
$ 2157 bytes was the average size of a spliced alignment
$ 14232 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1779 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 157 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 18:28:56
-->
