##gff-version 3
##sequence-region C07SLe0019G12.1 1 26963
C07SLe0019G12.1	RepeatMasker	nucleotide_motif	136	324	387	+	0	ID=HarbN_I_alignment_1;Target=HarbN_I 8 205 +
C07SLe0019G12.1	RepeatMasker	nucleotide_motif	376	524	295	-	0	ID=Copia00175_alignment_1;Target=Copia00175 2330 2478 -
C07SLe0019G12.1	RepeatMasker	nucleotide_motif	829	924	309	+	0	ID=SONATA3_alignment_1;Target=SONATA3 133 231 +
C07SLe0019G12.1	RepeatMasker	nucleotide_motif	2897	3081	705	+	0	ID=SINE_SO_alignment_1;Target=SINE_SO 1 185 +
C07SLe0019G12.1	RepeatMasker	nucleotide_motif	12282	12517	1839	+	0	ID=Copia00037_alignment_1;Target=Copia00037 2493 2729 +
C07SLe0019G12.1	RepeatMasker	nucleotide_motif	12514	12602	448	-	0	ID=Copia00205_alignment_1;Target=Copia00205 9998 10078 -
C07SLe0019G12.1	RepeatMasker	nucleotide_motif	16598	16630	233	+	0	ID=Unknown00041_alignment_1;Target=Unknown00041 1048 1080 +
C07SLe0019G12.1	RepeatMasker	nucleotide_motif	17345	17477	250	-	0	ID=Gypsy00073_alignment_1;Target=Gypsy00073 1655 1747 -
C07SLe0019G12.1	RepeatMasker	nucleotide_motif	22494	22604	279	+	0	ID=Copia00112_alignment_1;Target=Copia00112 7590 7710 +
C07SLe0019G12.1	RepeatMasker	nucleotide_motif	26693	26893	451	+	0	ID=Unknown00019_alignment_1;Target=Unknown00019 62 254 +
C07SLe0019G12.1	BLAST_tomato_bacs	match	15093	16424	2640	+	0	ID=C02HBa0138P10.1_fwd_alignment_1;blast_gaps=0;Target=clone-C02HBa0138P10.1 45833 47164 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C07SLe0019G12.1	BLAST_tomato_bacs	match	15093	16424	2640	+	0	ID=C02HBa0177F12.3_rev_alignment_1;blast_gaps=0;Target=clone-C02HBa0177F12.3 102172 103503 -;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C07SLe0019G12.1	BLAST_tomato_bacs	match	15093	16424	2531	+	0	ID=C02HBa0236E02.1_fwd_alignment_1;blast_gaps=7;Target=clone-C02HBa0236E02.1 72074 73413 +;blast_percent_identity=99.33;blast_mismatches=1;blast_evalue=0.0
C07SLe0019G12.1	BLAST_tomato_bacs	match	15093	16424	2640	+	0	ID=C05HBa0141A12.2_fwd_alignment_1;blast_gaps=0;Target=clone-C05HBa0141A12.2 9634 10965 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C07SLe0019G12.1	BLAST_tomato_bacs	match	15093	16424	2617	+	0	ID=C07HBa0040A11.1_rev_alignment_1;blast_gaps=0;Target=clone-C07HBa0040A11.1 78449 79780 -;blast_percent_identity=99.77;blast_mismatches=3;blast_evalue=0.0
C07SLe0019G12.1	BLAST_tomato_bacs	match	15089	16428	2601	+	0	ID=C07HBa0076O09.2_rev_alignment_1;blast_gaps=0;Target=clone-C07HBa0076O09.2 2497 3836 -;blast_percent_identity=99.48;blast_mismatches=7;blast_evalue=0.0
C07SLe0019G12.1	BLAST_tomato_bacs	match	1	1035	2044	+	0	ID=C07HBa0076O09.2_rev_alignment_2;blast_gaps=0;Target=clone-C07HBa0076O09.2 6723 7757 -;blast_percent_identity=99.90;blast_mismatches=1;blast_evalue=0.0
C07SLe0019G12.1	BLAST_tomato_bacs	match	1	1035	2044	+	0	ID=C07SLm0096B05.1_rev_alignment_1;blast_gaps=0;Target=clone-C07SLm0096B05.1 34155 35189 -;blast_percent_identity=99.90;blast_mismatches=1;blast_evalue=0.0
C07SLe0019G12.1	BLAST_tomato_bacs	match	15094	16424	2639	+	0	ID=C08SLe0028E18.2_fwd_alignment_1;blast_gaps=0;Target=clone-C08SLe0028E18.2 39167 40497 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C07SLe0019G12.1	BLAST_tomato_bacs	match	15093	16426	2644	+	0	ID=C09HBa0047I13.1_fwd_alignment_1;blast_gaps=0;Target=clone-C09HBa0047I13.1 19944 21277 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C07SLe0019G12.1	BLAST_tomato_bacs	match	15094	16425	2640	+	0	ID=C09SLe0017M14.2_rev_alignment_1;blast_gaps=0;Target=clone-C09SLe0017M14.2 63376 64707 -;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C07SLe0019G12.1	Contigs	contig	1	1035	.	.	0	ID=contig1_1;length=1035
C07SLe0019G12.1	Contigs	contig	1136	3772	.	.	0	ID=contig2_1;length=2637
C07SLe0019G12.1	Contigs	contig	3873	19121	.	.	0	ID=contig3_1;length=15249
C07SLe0019G12.1	Contigs	contig	19222	26963	.	.	0	ID=contig4_1;length=7742
C07SLe0019G12.1	BLAST_tomato_bac_ends	match	19227	19964	1376	+	0	ID=SL_EcoRI0019G12_SP6_235202_fwd_alignment_1;blast_gaps=0;Target=SL_EcoRI0019G12_SP6_235202 1 738 +;blast_percent_identity=99.73;blast_mismatches=2;blast_evalue=0.0
C07SLe0019G12.1	BLAST_tomato_bac_ends	match	3290	3648	664	+	0	ID=SL_EcoRI0019G12_T7_227591_rev_alignment_1;blast_gaps=0;Target=SL_EcoRI0019G12_T7_227591 27 385 -;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C07SLe0019G12.1	BLAST_tomato_bac_ends	match	8558	8731	303	+	0	ID=SL_FOS0007E15_pIBF_423630_fwd_alignment_1;blast_gaps=0;Target=SL_FOS0007E15_pIBF_423630 2 175 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=2e-79
C07SLe0019G12.1	BLAST_tomato_bac_ends	match	26388	26539	301	+	0	ID=SL_MboI0010I17_SP6_205077_fwd_alignment_1;blast_gaps=0;Target=SL_MboI0010I17_SP6_205077 640 791 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=1e-78
C07SLe0019G12.1	BLAST_tomato_bac_ends	match	25799	26322	979	+	0	ID=SL_MboI0010I17_SP6_205077_fwd_alignment_2;blast_gaps=0;Target=SL_MboI0010I17_SP6_205077 51 574 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C07SLe0019G12.1	BLAST_tomato_bac_ends	match	13140	13637	916	+	0	ID=SL_MboI0014I23_T7_213154_fwd_alignment_1;blast_gaps=0;Target=SL_MboI0014I23_T7_213154 1 498 +;blast_percent_identity=99.40;blast_mismatches=3;blast_evalue=0.0
C07SLe0019G12.1	BLAST_tomato_bac_ends	match	9094	9255	297	+	0	ID=SL_MboI0039K13_T7_221809_fwd_alignment_1;blast_gaps=1;Target=SL_MboI0039K13_T7_221809 1 161 +;blast_percent_identity=98.77;blast_mismatches=1;blast_evalue=1e-77
C07SLe0019G12.1	AUGUSTUS_tom_cdna	gene	8128	15550	1	+	.	ID=g1_1
C07SLe0019G12.1	AUGUSTUS_tom_cdna	transcript	8128	15550	.	+	.	ID=g1.t1_1;Parent=g1_1
C07SLe0019G12.1	AUGUSTUS_tom_cdna	start_codon	8128	8130	.	+	0	Parent=g1.t1_1
C07SLe0019G12.1	AUGUSTUS_tom_cdna	CDS	8128	8166	.	+	0	ID=g1.t1.cds_1;Parent=g1.t1_1
C07SLe0019G12.1	AUGUSTUS_tom_cdna	CDS	8263	8399	.	+	0	ID=g1.t1.cds_2;Parent=g1.t1_1
C07SLe0019G12.1	AUGUSTUS_tom_cdna	CDS	15166	15550	.	+	1	ID=g1.t1.cds_3;Parent=g1.t1_1
C07SLe0019G12.1	AUGUSTUS_tom_cdna	stop_codon	15548	15550	.	+	0	Parent=g1.t1_1
C07SLe0019G12.1	AUGUSTUS_tom_cdna	gene	15622	16413	1	+	.	ID=g2_1
C07SLe0019G12.1	AUGUSTUS_tom_cdna	transcript	15622	16413	.	+	.	ID=g2.t1_1;Parent=g2_1
C07SLe0019G12.1	AUGUSTUS_tom_cdna	start_codon	15622	15624	.	+	0	Parent=g2.t1_1
C07SLe0019G12.1	AUGUSTUS_tom_cdna	CDS	15622	16413	.	+	0	ID=g2.t1.cds_1;Parent=g2.t1_1
C07SLe0019G12.1	AUGUSTUS_tom_cdna	stop_codon	16411	16413	.	+	0	Parent=g2.t1_1
C07SLe0019G12.1	AUGUSTUS_ab_initio	gene	8128	15550	1	+	.	ID=g1_2
C07SLe0019G12.1	AUGUSTUS_ab_initio	transcript	8128	15550	.	+	.	ID=g1.t1_2;Parent=g1_2
C07SLe0019G12.1	AUGUSTUS_ab_initio	start_codon	8128	8130	.	+	0	Parent=g1.t1_2
C07SLe0019G12.1	AUGUSTUS_ab_initio	CDS	8128	8166	.	+	0	ID=g1.t1.cds_4;Parent=g1.t1_2
C07SLe0019G12.1	AUGUSTUS_ab_initio	CDS	8263	8399	.	+	0	ID=g1.t1.cds_5;Parent=g1.t1_2
C07SLe0019G12.1	AUGUSTUS_ab_initio	CDS	15166	15550	.	+	1	ID=g1.t1.cds_6;Parent=g1.t1_2
C07SLe0019G12.1	AUGUSTUS_ab_initio	stop_codon	15548	15550	.	+	0	Parent=g1.t1_2
C07SLe0019G12.1	AUGUSTUS_ab_initio	gene	15622	16413	1	+	.	ID=g2_2
C07SLe0019G12.1	AUGUSTUS_ab_initio	transcript	15622	16413	.	+	.	ID=g2.t1_2;Parent=g2_2
C07SLe0019G12.1	AUGUSTUS_ab_initio	start_codon	15622	15624	.	+	0	Parent=g2.t1_2
C07SLe0019G12.1	AUGUSTUS_ab_initio	CDS	15622	16413	.	+	0	ID=g2.t1.cds_2;Parent=g2.t1_2
C07SLe0019G12.1	AUGUSTUS_ab_initio	stop_codon	16411	16413	.	+	0	Parent=g2.t1_2
C07SLe0019G12.1	AUGUSTUS_tom_ugs	gene	8128	15550	1	+	.	ID=g1_3
C07SLe0019G12.1	AUGUSTUS_tom_ugs	transcript	8128	15550	.	+	.	ID=g1.t1_3;Parent=g1_3
C07SLe0019G12.1	AUGUSTUS_tom_ugs	start_codon	8128	8130	.	+	0	Parent=g1.t1_3
C07SLe0019G12.1	AUGUSTUS_tom_ugs	CDS	8128	8166	.	+	0	ID=g1.t1.cds_7;Parent=g1.t1_3
C07SLe0019G12.1	AUGUSTUS_tom_ugs	CDS	8263	8399	.	+	0	ID=g1.t1.cds_8;Parent=g1.t1_3
C07SLe0019G12.1	AUGUSTUS_tom_ugs	CDS	15166	15550	.	+	1	ID=g1.t1.cds_9;Parent=g1.t1_3
C07SLe0019G12.1	AUGUSTUS_tom_ugs	stop_codon	15548	15550	.	+	0	Parent=g1.t1_3
C07SLe0019G12.1	AUGUSTUS_tom_ugs	gene	15622	16413	1	+	.	ID=g2_3
C07SLe0019G12.1	AUGUSTUS_tom_ugs	transcript	15622	16413	.	+	.	ID=g2.t1_3;Parent=g2_3
C07SLe0019G12.1	AUGUSTUS_tom_ugs	start_codon	15622	15624	.	+	0	Parent=g2.t1_3
C07SLe0019G12.1	AUGUSTUS_tom_ugs	CDS	15622	16413	.	+	0	ID=g2.t1.cds_3;Parent=g2.t1_3
C07SLe0019G12.1	AUGUSTUS_tom_ugs	stop_codon	16411	16413	.	+	0	Parent=g2.t1_3
C07SLe0019G12.1	AUGUSTUS_tom_pot_cdna	gene	8128	15550	1	+	.	ID=g1_4
C07SLe0019G12.1	AUGUSTUS_tom_pot_cdna	transcript	8128	15550	.	+	.	ID=g1.t1_4;Parent=g1_4
C07SLe0019G12.1	AUGUSTUS_tom_pot_cdna	start_codon	8128	8130	.	+	0	Parent=g1.t1_4
C07SLe0019G12.1	AUGUSTUS_tom_pot_cdna	CDS	8128	8166	.	+	0	ID=g1.t1.cds_10;Parent=g1.t1_4
C07SLe0019G12.1	AUGUSTUS_tom_pot_cdna	CDS	8263	8399	.	+	0	ID=g1.t1.cds_11;Parent=g1.t1_4
C07SLe0019G12.1	AUGUSTUS_tom_pot_cdna	CDS	15166	15550	.	+	1	ID=g1.t1.cds_12;Parent=g1.t1_4
C07SLe0019G12.1	AUGUSTUS_tom_pot_cdna	stop_codon	15548	15550	.	+	0	Parent=g1.t1_4
C07SLe0019G12.1	AUGUSTUS_tom_pot_cdna	gene	15622	16413	1	+	.	ID=g2_4
C07SLe0019G12.1	AUGUSTUS_tom_pot_cdna	transcript	15622	16413	.	+	.	ID=g2.t1_4;Parent=g2_4
C07SLe0019G12.1	AUGUSTUS_tom_pot_cdna	start_codon	15622	15624	.	+	0	Parent=g2.t1_4
C07SLe0019G12.1	AUGUSTUS_tom_pot_cdna	CDS	15622	16413	.	+	0	ID=g2.t1.cds_4;Parent=g2.t1_4
C07SLe0019G12.1	AUGUSTUS_tom_pot_cdna	stop_codon	16411	16413	.	+	0	Parent=g2.t1_4
C07SLe0019G12.1	BLAST_E_coli_K12	match	15094	16424	2639	+	0	ID=gi|49175990|ref|NC_000913.2|_rev_alignment_1;blast_gaps=0;Target=gi|49175990|ref|NC_000913.2| 1465934 1467264 -;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C07SLe0019G12.1	BLAST_E_coli_K12	match	15094	16424	2639	+	0	ID=gi|49175990|ref|NC_000913.2|_rev_alignment_2;blast_gaps=0;Target=gi|49175990|ref|NC_000913.2| 2066965 2068295 -;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C07SLe0019G12.1	BLAST_E_coli_K12	match	15094	16424	2639	+	0	ID=gi|49175990|ref|NC_000913.2|_fwd_alignment_1;blast_gaps=0;Target=gi|49175990|ref|NC_000913.2| 3184118 3185448 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C07SLe0019G12.1	BLAST_E_coli_K12	match	15094	16426	2642	+	0	ID=gi|49175990|ref|NC_000913.2|_rev_alignment_3;blast_gaps=0;Target=gi|49175990|ref|NC_000913.2| 2994381 2995713 -;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C07SLe0019G12.1	BLAST_E_coli_K12	match	15091	16424	2644	+	0	ID=gi|49175990|ref|NC_000913.2|_fwd_alignment_2;blast_gaps=0;Target=gi|49175990|ref|NC_000913.2| 4496201 4497534 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C07SLe0019G12.1	BLAST_E_coli_K12	match	15094	16427	2644	+	0	ID=gi|49175990|ref|NC_000913.2|_fwd_alignment_3;blast_gaps=0;Target=gi|49175990|ref|NC_000913.2| 380484 381817 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C07SLe0019G12.1	BLAST_E_coli_K12	match	15719	16424	1400	+	0	ID=gi|49175990|ref|NC_000913.2|_fwd_alignment_4;blast_gaps=0;Target=gi|49175990|ref|NC_000913.2| 1648867 1649572 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0