<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 23:36:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8340" ref_strand="+" ref_description="SGN-M8340 C2_At4g23890 [cosii_markers]">
      <seq>aaaaacagattggtggtcagaatttgaaaggacaaattacagtttcccatttctacttttcatctcatcctctaccatcatctttcccaaatccaaagttcttgaaaaaaaatcaaaaccatggcttctgcttcttcctttcaactctcaagccttcaaattcaaaccccacctcttaaaaaatcaaactttcttggtcaatctgtcaatctcaacctcagtagtagtgttcataccaaatcagctatgaaatcatcttcaaactcagttacaccaatagcaaaattcaatctttatgagattcttggaggtagaggtctgtgtaatggagaagagggtatagagaaagagctaaaaaagtcgatttccgaagaacaaaaggcagtaggatcagcagcagcagcagctagtgatgatgataatcaagaaaacaaggagactggggagataccggaggacggatttgagaaagaaatgatggggtttactggcggatttccgggaggtgagaagggtctaatgaaatttatagagaaaaatccaccaccaccaccacccaagaaaacagaatcaagtatggtttctggttttaatcaaagtcttgtgaagaaaccaaagccacctgaattgccacttttgttacctgggatgattgctattgtcaagaattctaataatccatattatatgtattgtgggattgtgcagaggattactgatggtaaggctgctgtgctttttgaaggtgggaactgggataggttgatatctttcaggctcgaagaactcgaacgtagagagaaaggaccgccaatggtgaatcttaagtctgtgatacttgagaagatggtagaaaagagctctgaagcttgaattgcttcagtttttgagtagattgtttgttcttttgtcttttgggttgttgtacatacaagctgtaagttttgtaatggcaatggcatgtaataagaaatgcagaaaaacttttgtgcaggaaaaaaaaaaaaaaaaaaaaaaactcgagactagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="-" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="19502" stop="17904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19202" g_stop="18204" g_length="999"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="999" r_length="999" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1000" polyA_stop="1019"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="-" ref_id="SGN-M8340" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>999</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19202" e_stop="18204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGATTGGTGGTCAGAATTTGAAAGGACAAATTACAGTTTCCCATTTCTACTTCTCATCTCATCCTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAGA</genome_strand>
        <mrna_strand>AAAAACAGATTGGTGGTCAGAATTTGAAAGGACAAATTACAGTTTCCCATTTCTACTTTTCATCTCATCCTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9064" ref_strand="+" ref_description="SGN-M9064 C2_At5g53440 [cosii_markers]">
      <seq>tctggggttgacagcccatcaatgtttggctctttggacgacgacagtatagggaagtctaccaatcgtcacagaagaatcaatgatccgactataggaagaatgcaaggaaatgcttggaagggggttccaaattggccgtcacctctggcaaatggtttcatgcctttccagcatggtccacctcctgttggtttccatcccgcaatgcatcagtttcctggaccaccaatgttcggtgttaggccttcaatggacttgagtcaccctggggttccttaccatatgccagatgcagaccgcttttctggccatgggcgcccaatgggttggcgaactccactagatgattcatgtgggcccccattgcatggatgggatgctaacaattttggtgaagaagctcacctttatggaaggccagactgggaccagaataggacattgtccaacaatagtcggagttgggagacaattggtgatgtatggaaagggccaataaggggcaccagtgtggaggtgccatccggttcacagaaggaggtctgttcaattcagggccctgataattcttttgcttctcagttggctcagcaagctctgggtgaacaaaagcagacagatcaagatgctgaaagcaataatatcagttttcagtccagcagtgtccccggaaggaacactctagaagatttgaaaattaatcatgaagagcaaccaattgatgtgaagtcatcagggaaaggagaggctagtcttaacaatgtttacctcaaaaagcttgatatctcagcagatctgacagagcccgagttgtttgatcgatgtactagtttaatggatgttgagcagatcttgacatctgataactcaaagatcttattcttggagggtgctgtagaatctaatgtagtgctgcccagcaaattttcaactgttccactcattgctactgtggctgattctgtttttcagaaagccatttccctttacaagaggagggagaaaattgaattcacaaatggtggacattttactttctctggtcagctaggtgtgtcctctcctgcacctaaattagagaattcaagttcagttcatggtaaacttgaatgctccggtctggtggatgatgcgctagtagaagagggtgatgaggggactgatctccttgttagttctattagttctgaggaggttgtactttcacaaaccacacttcaggagctgtgtgagccaatgggtttgaacccaggcgagaaatcagatctcccttctagcttggatgaaggagctgttccgactgagaaatcagattttcctactaccatggatgaaggagctgtcccaattgagaaaccagatctccctactagcatggatgaaggagctgttctgagtgagaaatcagatctccctactagcatggatgaaggagctgggccgagcgagaaatcagatctccctactagcatggatgaaggagctggcatggaagctgatacagttgtggatgtggcccaggaaattaaagttttagaaactgcggaagaggtgggccaaactgatgcccttgcttctctggtgtctaaagatttgatgggggctgatgatgttgatgctaaatgtgatgctcttccacacactgatgtgtctactgaggtatttgaggcagtggtgccagagtcaattgagtctaatttgagtcggatacagcattcttctgaaagtacacattaagacaatttatttttccgagtttttgaaatgccccttttatattcccgtcttctgttttgtctgcttgctgctctttagctaatcaataaaactcagagttttctttaaaaaaaaaaaaaaaaaaaaactcgagatttgtttcactgcaaaaatgactgctctttcaaattcattgattttatccaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="27799" stop="30824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28099" g_stop="28989" g_length="891"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="891" r_length="891" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28990" i_stop="29070" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29071" g_stop="29154" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="892" r_stop="975" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29155" i_stop="29652" i_length="498">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29653" g_stop="30523" g_length="871"/>
          <reference_exon_boundary r_type="cDNA" r_start="976" r_stop="1846" r_length="871" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-M9064" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1846</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28099" e_stop="28989"/>
          <exon e_start="29071" e_stop="29154"/>
          <exon e_start="29653" e_stop="30523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGGGTTGACAGCCCATCAATGTTTGGCTCTTTGGACGACGACAGTAGAGGGAAGTCTACCAATCGTCACAGAAGAATCAATGATCCGACTATAGGAAGAATGCAAGGAAATGCTTGGAAGGGGGTTCCAAATTGGCCGTCACCTCTGGCAAATGGTTTCATGCCTTTCCAGCATGGTCCACCTCCTGTTGGTTTCCATCCCGCAATGCAGCAGTTTCCTGGACCACCAATGTTCGGTGTTAGGCCTTCAATGGACTTGAGTCACCCTGGGGTTCCTTACCATATGCCAGATGCAGACCGCTTTTCTGGCCATGGGCGCCCAATGGGTTGGCGAACTCCACTAGATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAAGGCCAGACTGGGACCAGAATAGGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTGAAAATTAATCATGAAGAGCAACCAATTGATGTGAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAGGTAAAGCGGGTAACTGAGTTATTTCTTTGTTTATTTATTTCTTTCATCACTGGAAGTTAATGTTTGTTCTTCTTCTAGCAGGGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAGGTGTGTGCTTTGTGCAAGATGCATATGCATTTCGAGTTGGAAAGTTAAATACTGTTATCGACCATATTATTATGTAATAGTTTTGTATGTTGCTATGCTGCTTATGCTTCTGTTACCTAGGACTAGTGTCTTGTATGTTCTCGTGCAATGCATGTTTGTTGGGGTTACTTACATTAATGTCTTGTTACTATTGTTCGCTCCACACATCTTGTTTCTCCTTTGTTTTAGGAGAAAAACAATCATGCTTTGGTCTTGGTCTCCATTTTATTTATGTGCAGAAGATATTTGCTCTTTATGATCTTTTTTTTAGCAAGTGAGAAAATGTGGGATAGTAGTTGCGTTCAATTTTTATTTGTGTAGAACAGAGATTTTCATGGGTTATAGTTGCCTAACCTAGTTGCTCAGTTTTTAAGTGAATCAGTTTTGTCTTTTATATACATAAATCCATGCTGTCTAGTTTCTCTTATTTAATAATGTGATGATGTGTCCCTATTGCAGAAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGCCCCTTTTATATTCCCGTCTTCTGTTTTGTCTGCTTGCTGCTCTTTAGCTAATCAATAAAACTCAGAGTTTTCTTT</genome_strand>
        <mrna_strand>TCTGGGGTTGACAGCCCATCAATGTTTGGCTCTTTGGACGACGACAGTATAGGGAAGTCTACCAATCGTCACAGAAGAATCAATGATCCGACTATAGGAAGAATGCAAGGAAATGCTTGGAAGGGGGTTCCAAATTGGCCGTCACCTCTGGCAAATGGTTTCATGCCTTTCCAGCATGGTCCACCTCCTGTTGGTTTCCATCCCGCAATGCATCAGTTTCCTGGACCACCAATGTTCGGTGTTAGGCCTTCAATGGACTTGAGTCACCCTGGGGTTCCTTACCATATGCCAGATGCAGACCGCTTTTCTGGCCATGGGCGCCCAATGGGTTGGCGAACTCCACTAGATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAAGGCCAGACTGGGACCAGAATAGGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTGAAAATTAATCATGAAGAGCAACCAATTGATGTGAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAG.................................................................................GGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGCCCCTTTTATATTCCCGTCTTCTGTTTTGTCTGCTTGCTGCTCTTTAGCTAATCAATAAAACTCAGAGTTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M616-F" ref_strand="+" ref_description="SGN-M616-F CT252-F [rflp_markers_forward]">
      <seq>cttttttttttttttggtaatttcaactaagagttaatatacttctttcttttttttctctctctataacttcacaatttttttgactctctctctaaaaagctcagagatgaattctcagatttgcagatctgctacaagagcagctaagtcactcctttctgcttcatctaagcagacttctcgtgctttttcaggaggacgagcagcagctgcagcagccacagtttcattgagaggagtggtgccttctctagcctcatatggcaggaatgaatctggaaatgcatctagagcttggatttctggtgtgcttgcccttcctgcagcagcttacatgctccaggagcaagaagcacatgctgccgagatggagcgcacctttattgccatcaagccagatggagtacagagaggcctgatttcagaaatcgtatcacgggttgagcgcaagggcttcaagctggttgcaatcaaagttgtgattccttccaaggaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="39165" stop="42023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39498" g_stop="39644" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="197" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40807" g_stop="40941" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="332" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41258" g_stop="41295" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="370" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="421" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41642" g_stop="41723" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="503" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="15" polyA_stop="1"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-M616-F" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M616-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39498" e_stop="39644"/>
          <exon e_start="40807" e_stop="40941"/>
          <exon e_start="41258" e_stop="41295"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41642" e_stop="41723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCTCTCTCTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAGGTATAATTTTCATTTTTATCACAAACTGGCTCACACTACAGTTATACTAGAAACAAATCATTATATTTCTTCCTGATGTGAATTATATAAGCTGAGATTTGTAATTGCTATTGTTTTTAATTGATGGATATTTGAGCTCGGGTTATCAAAACAAATTCATGAATGTTTGAGCTTTTTTAGCATATAGTCAAATCTCTTTGTAACAACGTCATTTGCTCACGAACAGAGTTCTCGTTCTATTTCCGGTAAATTTTTATTGCTGATGTGGATTGTAAGCTGTAATCTGTTATTGTTATCGTTTTTAATTGATGAGGTTTTAGCTTGTTAATTATTAAAAAAAATGCCGTGAAGTTTTGAGCTTTAAACTTGAGACTCCATTTTGAAAAGAATAGTGATTTGTAATTGGTATTGTATTTAATTTATGAAGTTTTGAGCTTTAAGCTTGTTATTCCAATATTTTTTAGGAAGTCCTAAAAACATTTGATTTTTGGTGTAAAACTTGTATATTTTCAGAAATTAGCTAGAAAAAAGTTCCAAAAATCTGAATTTTTTGGTAAATATTCCGTAATATTTTAGAAATGTTAAATATCTGGTAGGAGGAAATAAGTATTTGACTTTAGAATCGTAATGTGCGGTTAGTTTTGCCGTAGAGGAAGTAGTTGTTTTGAAGGCTGCCTAGATATTTATTTATGTTTGACTCATAGTAATGTTTTAATTTTCACTTTTTGGTCCCGGTGTTTGACTTTTTGGTATGTGGATTTGAATTTTTGCTTTGGAATTTGGAGGAATTGTGCAGCAATTAAGGAGCCTATGAATTAGTACATGTGTTCCAAATGAATTGTGGTTAAAGAAAGATTACCTGTTGAGCTCAATGTACAGCGGTTCCAGCATTTGCATCTCAAACTTGGACTAGATTTATGCATATAAGAATTAAGTTGAATAGTTAAAGTATGTACATATTATATGTGGTGTATCTCCAAATCATGGATTTTCTTCACACGATATGTATGACTAATGTGAGGTACTTGTTCTCACTGAAGATAATCCGTTTTCTTATATGCTTGGTTTCTTGTTGGGAATGCCTTATGTGTCATATATGTTAAAAGATAATCTAAGTTTGGTTATATTGAAAATGCTGATTTCTGAGTTCTCTTTGTTGCAGGAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAGGTTTGTTCAAGTTTATTTTTCATGGACTTGTTGCATGCTCCTCTCTGAAAGCCTCTTGTGGTGAAATTTGATTCTCTGAGAAAGCTTATGCTTTGTACCTTTTCTAGGATATAGTTACTGGCATTTAGGTGTTTACATTTAAGCCTTTTACTTGCATGGTATGGGGTGAAATGGTTTGCTGTACTTGTGCTCATAATTGAGCATTTCATTCCATTTTTCTCAAACAAAAGTTATAACTTGTCCTGCCTTTGTTTCCTTATTCGGGGAAATAGTAATTTGTATTCTAATTTCATCGTTTCCCTCCCTTTCTGTTTAGCTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAGGTACGATATTCTCAGCCTTCCTCTTGATTGAGGTGTTATATTATCCATTTATTTTTCATTGTCATTCTTTTTAGTAACAAATTTGATCTGTTTGTATTTCTTTCAAGATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTGGTACGATAATGATTTCTCTTGCTACTTCTTCTATTTATATGGTCTTCCAATAACGGGCTCCCACCCACAATCCCTTAGTTGAAGAGGCAGCTGAAGTTACTTCACATTTTAATATTTTATCTGGGTGCTTGATGGGTAATAATGTGTTCTCTTTTACTTTTGGCTGATAAATTTTTGTTTCATTTCAGATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTG</genome_strand>
        <mrna_strand>TTTTTTTCTCTCTCTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG............................................................................................................................................................................................................................................................................................................................CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG...........................................................................................................ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG............................................................................................................................................................................................ATTTCAGAAATCGTATCACGGGTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8930-2" ref_strand="+" ref_description="SGN-M8930-2 C2_At5g42070-2 [cosii_markers]">
      <seq>cacagtggagcagagtggctgagaagatgatcaccgccaccagcatggccaccggtggtagcagctccgtctttctctccgtcccaaaactaccatcccaaaagttgcaaattttatctcacaaacaagtctttttcacaaacaaaaagtggtctacattgccctttctctgttcttcttcaactccacttgtagaagaagaaaatgggtcgactgacgatgtccttccagcttcgataaatgaagaatctagttcagttttacctcccggagcatgtaagggttgtgggagattggagattgaaagtggttgtaatggcgaaggacggatacaaggagggattgcaacaattccagggtttggttggtggccaatcaaggcttacaggccgtgccctgcgtttgttgcttctggtggtaggtacaaaaggtttggacaaagcatggatgaagttgtctctgggaaaggaggtagagttagtactgtcggaactgacgttgaggttcaatcaagcacgaaaaagaacagaacgaagagatcgaagagctaactgttggaatgtaatttcaagagattggaggttgtttggctgagcacggagtttaagctactaacttggcagtttcctcgtctctctataggttttttggtgataaaaacttgaattgcgtgtatttatacaaatcccaaatggttatttgtgttagcaattgtaatcaagatgaactatgttgttttatttccaactatactatttagtttgttactggtcaagacttcacccgtgaaattatactagctatgttgttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="123249" stop="125845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123549" g_stop="123819" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123820" i_stop="124424" i_length="605">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124425" g_stop="124667" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="514" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125246" g_stop="125545" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="814" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="815" polyA_stop="831"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-M8930-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8930-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123549" e_stop="123819"/>
          <exon e_start="124425" e_stop="124667"/>
          <exon e_start="125246" e_stop="125545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGGGTATGCTCAATTTTTCTGCTTTGCAAAATTTAATTTCTTGAAAATTATCCCCTTTTGGGGAAATTTGCAGCTAAAGCCTTTGCATCTGGAATGTTAACAAGTGTTAGAAATTTATATTGCTAAAGATGTGATACTTTTTATTTATTAATTTTTGTCTTAGAACAGACCTTTGTCTCTTTTACCTTTTTGATTATCCATAAATTACAGAGGACCAGTGACATACTGTTCAAAGCTTGGTGTATAATTATCGTCTTTACAACAGACGTCTCTCTCAACTATCAAGTTCATTTGTGCTACTATTTGGTCCAAAAGCTTAATATTGAATAAACAGTTAACGAAACTCTCGCTTAAGTTGGACAAATCGGTTACCTCTCCTGTGTTGGTTTGTGACCTATTGCATAGGAGCGGGGGTTTGTATCCCTTGTTATCAAAAAAATATACTTGGATTAGATGTTTCAGTCTTGAGAGATCGTAGTTCCTTTCAAACCATAGAATGTGTTTCAGTCTTGACTATGATTTTGTTTTACGCTATTTCATTCAAGTGGTTGCTGATATAAACGAACATATTCTGCAATGTTAATGAATTGAATTTGATGTGTTTACAGAGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAGGTAAATATCTATTTAGTCTATTTCCGCTCTTTTCATCTCTTTGTGCTTAGCAATTGTCGACTATCTGGTGATATAATGAGGAGTTTAACTTGAAATTATTAGTACAAGATACTTGCTGATGGATAGCGGAATGATAAAATGGAAATAGTCATTACACTAGCCGAGGGTCTTTCTGAAATAGCCTCTCTACCTTCACGAGGGATAAGGTTATGCATGCACTCTACCCTCCCAGACCCACCCATGGGATTTCACTGGATATGTTATTACTGTTGTAATCTGTCATATCATATCAGAAGATCTGAACGATAACCAAATCTCACACAAGCAGCCGTGAAACACTGTTTGGATCAAACGCGCTGCTACTTCATTCTACTGATTGTCTAAGCATAGCCTAAATGACTTAAAAACGTCAAAAACTACTACTCAATCCCAAGCAAGTTGGAGTCTATGTCCATGTTGCTCCATTCAAGTTCGTCCCAGTCCATTATTATACTGTTATGAGCTCTCAAGTACTTGAGAGAACTTCAAAGCTAGTAAACTCATAACTTATGCTTTTCATCTTATATCAAACTTTGCAGCACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAATTATACTAGCTATGTTGTTGTTA</genome_strand>
        <mrna_strand>CACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAATTATACTAGCTATGTTGTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8216-3" ref_strand="+" ref_description="SGN-M8216-3 C2_At4g10920-3 [cosii_markers]">
      <seq>cttttcatctactttcccaattgagctaaattccgcccctgcaaaaaccttttgaaattccacaacattcttcgaaatggattctgaaacttccatcagaatcgaagaaacagtactcgatatcctcaaaacctgtaacctggaagaagtttcggagcaaaaaatccgaagaatggcttcagaaaagctaggtcttgacctatccgaaccgacccggaagaaatttgtccggcaggtggtggagaagttccttgctgaagaacaagcaaaacgtgaggcaaatgctactgatgaagtaaaggaggaggaggaggaggatgatgaagaagaggaggacggcaaagtgaaaagcagcggtgataaggagtacgatgacgaaggcgatctcatcgtttgccgattgtcgcataagagaagagtgactgttactgactttaggggaaaaactctggtgtcgataagagagtactacagcaaagagggcaaggagttgcctacttctaaagggataagtttgacagctgagcaatgggcaactttcaagaagaatattcctggagttgaacaagccatcaagaaattggagtcgaagtcttagtttagtttttaattttggttacatgcagtagtaatatttgaagtacttgaaatactaggagacatgttcttttgggtaaattggttacctttgttacatgcattattatgcctgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="125704" stop="129442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126003" g_stop="126409" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127041" g_stop="127146" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="506" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128929" g_stop="129142" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="716" r_length="210" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-M8216-3" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8216-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126003" e_stop="126409"/>
          <exon e_start="127041" e_stop="127146"/>
          <exon e_start="128929" e_stop="129142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCATCTACTTCCCCAATTGAGCGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGAGTGAGTTCTTATAACTGCTGTAATTCTGCTTTCTGAAATTCTCTTTACTGTTGTAGTTTTGGTTATCATCTGTTTGGTGGAATGGTCCAGGAGGCCCATTGTACTTGGTTTCGATTGTCATTTGGACATTTTAAACTCATTTCTCATCCGATCAGTGTGTGTACAACAACCGATTACACATGGAAGAAGAAAGATATTTTTTTTTCTTTTTGTTGAACTAAACAATTTTCTATTTGGATTATGATTTATGAAAATTTTAAATTTTAAGCACCTGCAAGATGAGAAAGTGATCAACTTTATGAGTTTTTGCTTACTTGTACTTGAAAGATGATGGAGGTGGATTATCTTCTTTTCTTACAAAAACAAAAATGATTGATTAATAGTTAATAGAAGAAAGACGAATATAAGAAGAGCTTGAAAGTCTATATTGGCTGACATGATGGAACTGATGCATTAATCCTAGTACTTGGAACTCGGTCATTAGAGTACTTATTAGGGCTTATCATAATGTGATGTGAAATGTTTATTGTTTTCTGTTGCTTTATTTCTGCTGAGATAATGTATCTCGATGTCCCTCTTTTGGGTTGATAAAAAAATATATTCTTGATGTTTTTCTGGGAATTCAATGTAGTTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAGGTAATAATCATTTTATTAGATTTTTTATCATGAATTTGCATACAAAAGTTCATGTTTTCTCATTTGAAATAAGCTCAAGTGATTGGCTGACTGCTATAGTTAGAAATGAAGTCTGTTGAAAAATTTTAAATCATAGATGTAAAGCAAATTCTTTATGCACTGAGAAGTTAAATCGCGCCATGCTTGTGGTTTGGATCACTACAACGAGAAAATGTACATTTCTGTATTGCTTGGTCTTAAAATGTTCAGCTATTAGTTATCCATCATAATCCTGCTCTGAATTGCATTTCCTATGTTATATGGGGCAGAAAGAACTTCACTGAAGAATTTTATCACTTGCTGGCTTTTTGTTTATATTCTCTTTGCCCAAAGTTTATCTCTTAAAAGGTATAATTAGCTTGTTGTACCACGACCTTGATACATGTGTGCTTTTATGCCCTTTAAGGTAGAATGTGGCGAATGAATTCACCTGCAAACAGTTTTCATATTAGTGCTCAACTATCTCTCTCCTCTTCCCCCCCCCCCCCCCCCCTCCTTCCTCCCAAAAAGAAAAGGAATTTCATGTTACCTAAACATGATTTTATTGGCCTCCTCTACTGCTGTCACTTGATAAAGTCAAGAGACAATAATAGCAAGAACAGAACTTCGCTGATTATAAGCACTTTCTGCACTTTGTGTTCAATAAAGAAGAATTTAAAGGTTTTTACCTTGAGCGCTTCTTCCTATTTTTTGGCAGTTTATATAAAAAATAAAATAAGTCGTAGAGTGAGTGCTTCTGCCCTTTTTTTTTTTTAAAGCCACTTCAGGGAATATTGTTGTATGGTGTCTCGAAAGCTATCTACATTCTGCTCTTTTAGTTGTTTATTTAAAGAGATGGCTACTTTCTTGCATTGTCTGGTGGTTTTAGCTGATTCAAAAGGAACCTTTTAGATTGTTCCCCATCTACTTGATATTATCTGTCATTTCATCTCTATCTTTGTCCATCTAACATGTCCACCACTGTCTGCAATGAAGGTTTTTGCCACATCTATGTTCCTCTATCCATATGTTATTCAACTCCATCATATGGAATTAACAGTGGTCCCACCATCATAGCTAATTATATCATGTTGGGAACTAACTTAATCAGAAGATACAATTTTCGGAAGTAAAAAATGAAAGATCTTGAGACTTCTTCATTTTTTCTGGACTCCATTTGGTTAGTAAGAAAACATCAGTTATTAATCTTGAGACCAGCATTTGTTTAAAGCATCCAATAAGTGTTTCTGACCACACACAACAACCAAAAAGAAAAAGTTTTTTTGAGGGGAAAAGGTTAGACTGGTTATCTGCAAGGAACTTATGGGCCATTTATTGGACCACCTAGATATTTTGCTTTCTGATCTTTTGTTGAATGTACAACTACTGCTGCTGGTGCTGGTACCTCTCTCCTTTTCTCTTTTATTAATCATAAGCGGTGTTAGACTTAGCCAATGAATGATACGGATGATGGTGGTACTGATGATTTGTTTGGGATGCCAAGAAGGGCTTTTTGTTAGAAGTAGGTGCTTGATTTTTCATTTGAAACTAATAATTGCCCGGATTTATGGTATTTTATGCTGTTCTATAAGATGTTGTCTTATATTCCTCTGAGTTCCACTATCGGAACTTTCACCTTGTTAGTGAGGGTTCGGTTCCCCACTTCGTAATCCTTTTCCCCCTGAATTCATCCAAAGATGAAATCGCAAAGGGTAAAAATAACAATAGGACCACTTCTTCTGATACTTATTGTATCCCCTGCAGGGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAG-ACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCT</genome_strand>
        <mrna_strand>CTTTTCATCTACTTTCCCAATTGAGCTAAATTCCGCCCCTGCA-AAAACCTTTTGAAATTCCACAACATTCTTCGAAATGGATTCTGAAACTTCCATCAGAATCGAAGAAACAGTACTCGATATCCTCAAAACCTGTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAGGCAAATGCTACTGATGAAGT-AA--AGGAGGAGGAGGA-G--GAGGATGATGAAGAAGAGGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTACGATGACGAAGGCGATCTCATCGTTTGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCATAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAATTGGAGTCGAAGTCTTAGTTTAGTTTTTAATTTTGGTTACATGCAGT-AGTAATATTTGAAGTACTTGAAATACTAGGAGACATGTTCTTTTGGGTAAATTGG-TT-ACCTTT-GTT-ACATGCATTATTATGCCTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8216-2" ref_strand="+" ref_description="SGN-M8216-2 C2_At4g10920-2 [cosii_markers]">
      <seq>cgaaattccgcccctgcaaaaaaccttttgaaattccacaactttctccgaaatggattctgaaacttccaatggaatcgaagaaacggtacttgatatcctcaaaacctctaacctggaagaagtttcggagcaaaaaatccgaagaatggcttcagaaaagctaggtcttgacctatccgaaccgacccggaagaaatttgtccggcaggtggtggagaagttccttgctgaagaacaagcaaaacgtgaagcaaatgctgctgatgaagtgaaggaggaggaggaggaggacgagaatgatgaagaagaagaggacggcaaagtgaaaagcagcggtgataaggagtatgatgacgaaggcgatctcatcgtttgccgattgtcgcaaaagagaagagtgactgttactgactttaggggaaaaactctggtgtcgataagagagtactacagcaaagagggcaaggagttgcctacttctaaagggataagtttgacagctgagcaatgggcaactttcaagaagaatattcctggagttgaacaagccatcaagaaaatggagtcgaaggcttagtttagttcttgatttcggttacatgcagtaaactatatttgaagacttaaaacactaggagacatgtttttttgggtaaattggtttaacttttggttaacatgcagtattatgcctgctctcttggctaatacagattttctctaatttgaggcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="125728" stop="129476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126028" g_stop="126409" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127041" g_stop="127146" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="488" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128929" g_stop="129173" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="733" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="736" polyA_stop="752"/>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-M8216-2" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8216-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126028" e_stop="126409"/>
          <exon e_start="127041" e_stop="127146"/>
          <exon e_start="128929" e_stop="129173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGAGTGAGTTCTTATAACTGCTGTAATTCTGCTTTCTGAAATTCTCTTTACTGTTGTAGTTTTGGTTATCATCTGTTTGGTGGAATGGTCCAGGAGGCCCATTGTACTTGGTTTCGATTGTCATTTGGACATTTTAAACTCATTTCTCATCCGATCAGTGTGTGTACAACAACCGATTACACATGGAAGAAGAAAGATATTTTTTTTTCTTTTTGTTGAACTAAACAATTTTCTATTTGGATTATGATTTATGAAAATTTTAAATTTTAAGCACCTGCAAGATGAGAAAGTGATCAACTTTATGAGTTTTTGCTTACTTGTACTTGAAAGATGATGGAGGTGGATTATCTTCTTTTCTTACAAAAACAAAAATGATTGATTAATAGTTAATAGAAGAAAGACGAATATAAGAAGAGCTTGAAAGTCTATATTGGCTGACATGATGGAACTGATGCATTAATCCTAGTACTTGGAACTCGGTCATTAGAGTACTTATTAGGGCTTATCATAATGTGATGTGAAATGTTTATTGTTTTCTGTTGCTTTATTTCTGCTGAGATAATGTATCTCGATGTCCCTCTTTTGGGTTGATAAAAAAATATATTCTTGATGTTTTTCTGGGAATTCAATGTAGTTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAGGTAATAATCATTTTATTAGATTTTTTATCATGAATTTGCATACAAAAGTTCATGTTTTCTCATTTGAAATAAGCTCAAGTGATTGGCTGACTGCTATAGTTAGAAATGAAGTCTGTTGAAAAATTTTAAATCATAGATGTAAAGCAAATTCTTTATGCACTGAGAAGTTAAATCGCGCCATGCTTGTGGTTTGGATCACTACAACGAGAAAATGTACATTTCTGTATTGCTTGGTCTTAAAATGTTCAGCTATTAGTTATCCATCATAATCCTGCTCTGAATTGCATTTCCTATGTTATATGGGGCAGAAAGAACTTCACTGAAGAATTTTATCACTTGCTGGCTTTTTGTTTATATTCTCTTTGCCCAAAGTTTATCTCTTAAAAGGTATAATTAGCTTGTTGTACCACGACCTTGATACATGTGTGCTTTTATGCCCTTTAAGGTAGAATGTGGCGAATGAATTCACCTGCAAACAGTTTTCATATTAGTGCTCAACTATCTCTCTCCTCTTCCCCCCCCCCCCCCCCCCTCCTTCCTCCCAAAAAGAAAAGGAATTTCATGTTACCTAAACATGATTTTATTGGCCTCCTCTACTGCTGTCACTTGATAAAGTCAAGAGACAATAATAGCAAGAACAGAACTTCGCTGATTATAAGCACTTTCTGCACTTTGTGTTCAATAAAGAAGAATTTAAAGGTTTTTACCTTGAGCGCTTCTTCCTATTTTTTGGCAGTTTATATAAAAAATAAAATAAGTCGTAGAGTGAGTGCTTCTGCCCTTTTTTTTTTTTAAAGCCACTTCAGGGAATATTGTTGTATGGTGTCTCGAAAGCTATCTACATTCTGCTCTTTTAGTTGTTTATTTAAAGAGATGGCTACTTTCTTGCATTGTCTGGTGGTTTTAGCTGATTCAAAAGGAACCTTTTAGATTGTTCCCCATCTACTTGATATTATCTGTCATTTCATCTCTATCTTTGTCCATCTAACATGTCCACCACTGTCTGCAATGAAGGTTTTTGCCACATCTATGTTCCTCTATCCATATGTTATTCAACTCCATCATATGGAATTAACAGTGGTCCCACCATCATAGCTAATTATATCATGTTGGGAACTAACTTAATCAGAAGATACAATTTTCGGAAGTAAAAAATGAAAGATCTTGAGACTTCTTCATTTTTTCTGGACTCCATTTGGTTAGTAAGAAAACATCAGTTATTAATCTTGAGACCAGCATTTGTTTAAAGCATCCAATAAGTGTTTCTGACCACACACAACAACCAAAAAGAAAAAGTTTTTTTGAGGGGAAAAGGTTAGACTGGTTATCTGCAAGGAACTTATGGGCCATTTATTGGACCACCTAGATATTTTGCTTTCTGATCTTTTGTTGAATGTACAACTACTGCTGCTGGTGCTGGTACCTCTCTCCTTTTCTCTTTTATTAATCATAAGCGGTGTTAGACTTAGCCAATGAATGATACGGATGATGGTGGTACTGATGATTTGTTTGGGATGCCAAGAAGGGCTTTTTGTTAGAAGTAGGTGCTTGATTTTTCATTTGAAACTAATAATTGCCCGGATTTATGGTATTTTATGCTGTTCTATAAGATGTTGTCTTATATTCCTCTGAGTTCCACTATCGGAACTTTCACCTTGTTAGTGAGGGTTCGGTTCCCCACTTCGTAATCCTTTTCCCCCTGAATTCATCCAAAGATGAAATCGCAAAGGGTAAAAATAACAATAGGACCACTTCTTCTGATACTTATTGTATCCCCTGCAGGGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAATTTGAG</genome_strand>
        <mrna_strand>CGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGAGGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAATTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1612" ref_strand="+" ref_description="SGN-M1612 T0803 [cos_markers]">
      <seq>cgaaattccgcccctgcaaaaaaccttttgaaattccacaactttctccgaaatggattctgaaacttccaatggaatcgaagaaacggtacttgatatcctcaaaacctctaacctggaagaagtttcggagcaaaaaatccgaagaatggcttcagaaaagctaggtcttgacctatccgaaccgacccggaagaaatttgtccggcaggtggtggagaagttccttgctgaagaacaagcaaaacgtgaagcaaatgctgctgatgaagtgaaggaggaggaggaggacgacgagaatgatgaagaagaagaggacggcaaagtgaaaagcagcggtgataaggagtatgatgacgaaggcgatctcatcgtttgccgattgtcgcaaaagagaagagtgactgttactgactttaggggaaaaactctggtgtcgataagagagtactacagcaaagagggcaaggagttgcctacttctaaagggataagtttgacagctgagcaatgggcaactttcaagaagaatattcctggagttgaacaagccatcaagaaaatggagtcgaaggcttagtttagttcttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C08HBa0202N15-AxHDA/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C08HBa0202N15.1" temp_strand="+" temp_description="C08HBa0202N15.1  AP009281.1 htgs_phase:2 submitted_to_sgn_as:C08HBa0202N15 upload_account_name:japan">
        <position start="125728" stop="129336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126028" g_stop="126409" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127041" g_stop="127146" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="488" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128929" g_stop="129036" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="596" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C08HBa0202N15.1" gen_strand="+" ref_id="SGN-M1612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C08HBa0202N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126028" e_stop="126409"/>
          <exon e_start="127041" e_stop="127146"/>
          <exon e_start="128929" e_stop="129036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGAGTGAGTTCTTATAACTGCTGTAATTCTGCTTTCTGAAATTCTCTTTACTGTTGTAGTTTTGGTTATCATCTGTTTGGTGGAATGGTCCAGGAGGCCCATTGTACTTGGTTTCGATTGTCATTTGGACATTTTAAACTCATTTCTCATCCGATCAGTGTGTGTACAACAACCGATTACACATGGAAGAAGAAAGATATTTTTTTTTCTTTTTGTTGAACTAAACAATTTTCTATTTGGATTATGATTTATGAAAATTTTAAATTTTAAGCACCTGCAAGATGAGAAAGTGATCAACTTTATGAGTTTTTGCTTACTTGTACTTGAAAGATGATGGAGGTGGATTATCTTCTTTTCTTACAAAAACAAAAATGATTGATTAATAGTTAATAGAAGAAAGACGAATATAAGAAGAGCTTGAAAGTCTATATTGGCTGACATGATGGAACTGATGCATTAATCCTAGTACTTGGAACTCGGTCATTAGAGTACTTATTAGGGCTTATCATAATGTGATGTGAAATGTTTATTGTTTTCTGTTGCTTTATTTCTGCTGAGATAATGTATCTCGATGTCCCTCTTTTGGGTTGATAAAAAAATATATTCTTGATGTTTTTCTGGGAATTCAATGTAGTTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAGGTAATAATCATTTTATTAGATTTTTTATCATGAATTTGCATACAAAAGTTCATGTTTTCTCATTTGAAATAAGCTCAAGTGATTGGCTGACTGCTATAGTTAGAAATGAAGTCTGTTGAAAAATTTTAAATCATAGATGTAAAGCAAATTCTTTATGCACTGAGAAGTTAAATCGCGCCATGCTTGTGGTTTGGATCACTACAACGAGAAAATGTACATTTCTGTATTGCTTGGTCTTAAAATGTTCAGCTATTAGTTATCCATCATAATCCTGCTCTGAATTGCATTTCCTATGTTATATGGGGCAGAAAGAACTTCACTGAAGAATTTTATCACTTGCTGGCTTTTTGTTTATATTCTCTTTGCCCAAAGTTTATCTCTTAAAAGGTATAATTAGCTTGTTGTACCACGACCTTGATACATGTGTGCTTTTATGCCCTTTAAGGTAGAATGTGGCGAATGAATTCACCTGCAAACAGTTTTCATATTAGTGCTCAACTATCTCTCTCCTCTTCCCCCCCCCCCCCCCCCCTCCTTCCTCCCAAAAAGAAAAGGAATTTCATGTTACCTAAACATGATTTTATTGGCCTCCTCTACTGCTGTCACTTGATAAAGTCAAGAGACAATAATAGCAAGAACAGAACTTCGCTGATTATAAGCACTTTCTGCACTTTGTGTTCAATAAAGAAGAATTTAAAGGTTTTTACCTTGAGCGCTTCTTCCTATTTTTTGGCAGTTTATATAAAAAATAAAATAAGTCGTAGAGTGAGTGCTTCTGCCCTTTTTTTTTTTTAAAGCCACTTCAGGGAATATTGTTGTATGGTGTCTCGAAAGCTATCTACATTCTGCTCTTTTAGTTGTTTATTTAAAGAGATGGCTACTTTCTTGCATTGTCTGGTGGTTTTAGCTGATTCAAAAGGAACCTTTTAGATTGTTCCCCATCTACTTGATATTATCTGTCATTTCATCTCTATCTTTGTCCATCTAACATGTCCACCACTGTCTGCAATGAAGGTTTTTGCCACATCTATGTTCCTCTATCCATATGTTATTCAACTCCATCATATGGAATTAACAGTGGTCCCACCATCATAGCTAATTATATCATGTTGGGAACTAACTTAATCAGAAGATACAATTTTCGGAAGTAAAAAATGAAAGATCTTGAGACTTCTTCATTTTTTCTGGACTCCATTTGGTTAGTAAGAAAACATCAGTTATTAATCTTGAGACCAGCATTTGTTTAAAGCATCCAATAAGTGTTTCTGACCACACACAACAACCAAAAAGAAAAAGTTTTTTTGAGGGGAAAAGGTTAGACTGGTTATCTGCAAGGAACTTATGGGCCATTTATTGGACCACCTAGATATTTTGCTTTCTGATCTTTTGTTGAATGTACAACTACTGCTGCTGGTGCTGGTACCTCTCTCCTTTTCTCTTTTATTAATCATAAGCGGTGTTAGACTTAGCCAATGAATGATACGGATGATGGTGGTACTGATGATTTGTTTGGGATGCCAAGAAGGGCTTTTTGTTAGAAGTAGGTGCTTGATTTTTCATTTGAAACTAATAATTGCCCGGATTTATGGTATTTTATGCTGTTCTATAAGATGTTGTCTTATATTCCTCTGAGTTCCACTATCGGAACTTTCACCTTGTTAGTGAGGGTTCGGTTCCCCACTTCGTAATCCTTTTCCCCCTGAATTCATCCAAAGATGAAATCGCAAAGGGTAAAAATAACAATAGGACCACTTCTTCTGATACTTATTGTATCCCCTGCAGGGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTC</genome_strand>
        <mrna_strand>CGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="19202" PGL_stop="18204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19202" e_stop="18204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="19202" e_stop="18204" e_length="999"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19202" stop="18204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8340" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACAGATTGGTGGTCAGAATTTGAAAGGACAAATTACAGTTTCCCATTTCTACTTCTCATCTCATCCTCTACCATCATCTTTCCCAAATCCAAAGTTCTTGAAAAAAAATCAAAACCATGGCTTCTGCTTCTTCCTTTCAACTCTCAAGCCTTCAAATTCAAACCCCACCTCTTAAAAAATCAAACTTTCTTGGTCAATCTGTCAATCTCAACCTCAGTAGTAGTGTTCATACCAAATCAGCTATGAAATCATCTTCAAACTCAGTTACACCAATAGCAAAATTCAATCTTTATGAGATTCTTGGAGGTAGAGGTCTGTGTAATGGAGAAGAGGGTATAGAGAAAGAGCTAAAAAAGTCGATTTCCGAAGAACAAAAGGCAGTAGGATCAGCAGCAGCAGCAGCTAGTGATGATGATAATCAAGAAAACAAGGAGACTGGGGAGATACCGGAGGACGGATTTGAGAAAGAAATGATGGGGTTTACTGGCGGATTTCCGGGAGGTGAGAAGGGTCTAATGAAATTTATAGAGAAAAATCCACCACCACCACCACCCAAGAAAACAGAATCAAGTATGGTTTCTGGTTTTAATCAAAGTCTTGTGAAGAAACCAAAGCCACCTGAATTGCCACTTTTGTTACCTGGGATGATTGCTATTGTCAAGAATTCTAATAATCCATATTATATGTATTGTGGGATTGTGCAGAGGATTACTGATGGTAAGGCTGCTGTGCTTTTTGAAGGTGGGAACTGGGATAGGTTGATATCTTTCAGGCTCGAAGAACTCGAACGTAGAGAGAAAGGACCGCCAATGGTGAATCTTAAGTCTGTGATACTTGAGAAGATGGTAGAAAAGAGCTCTGAAGCTTGAATTGCTTCAGTTTTTGAGTAGATTGTTTGTTCTTTTGTCTTTTGGGTTGTTGTACATACAAGCTGTAAGTTTTGTAATGGCAATGGCATGTAATAAGAAATGCAGAAAAACTTTTGTGCAGGAAGA</gDNA_template>
            <first_frame> K  N  R  L  V  V  R  I  *  K  D  K  L  Q  F  P  I  S  T  S  H  L  I  L  Y  H  H  L  S  Q  I  Q  S  S  *  K  K  I  K  T  M  A  S  A  S  S  F  Q  L  S  S  L  Q  I  Q  T  P  P  L  K  K  S  N  F  L  G  Q  S  V  N  L  N  L  S  S  S  V  H  T  K  S  A  M  K  S  S  S  N  S  V  T  P  I  A  K  F  N  L  Y  E  I  L  G  G  R  G  L  C  N  G  E  E  G  I  E  K  E  L  K  K  S  I  S  E  E  Q  K  A  V  G  S  A  A  A  A  A  S  D  D  D  N  Q  E  N  K  E  T  G  E  I  P  E  D  G  F  E  K  E  M  M  G  F  T  G  G  F  P  G  G  E  K  G  L  M  K  F  I  E  K  N  P  P  P  P  P  P  K  K  T  E  S  S  M  V  S  G  F  N  Q  S  L  V  K  K  P  K  P  P  E  L  P  L  L  L  P  G  M  I  A  I  V  K  N  S  N  N  P  Y  Y  M  Y  C  G  I  V  Q  R  I  T  D  G  K  A  A  V  L  F  E  G  G  N  W  D  R  L  I  S  F  R  L  E  E  L  E  R  R  E  K  G  P  P  M  V  N  L  K  S  V  I  L  E  K  M  V  E  K  S  S  E  A  *  I  A  S  V  F  E  *  I  V  C  S  F  V  F  W  V  V  V  H  T  S  C  K  F  C  N  G  N  G  M  *  *  E  M  Q  K  N  F  C  A  G  R </first_frame>
            <second_frame>  K  T  D  W  W  S  E  F  E  R  T  N  Y  S  F  P  F  L  L  L  I  S  S  S  T  I  I  F  P  K  S  K  V  L  E  K  K  S  K  P  W  L  L  L  L  P  F  N  S  Q  A  F  K  F  K  P  H  L  L  K  N  Q  T  F  L  V  N  L  S  I  S  T  S  V  V  V  F  I  P  N  Q  L  *  N  H  L  Q  T  Q  L  H  Q  *  Q  N  S  I  F  M  R  F  L  E  V  E  V  C  V  M  E  K  R  V  *  R  K  S  *  K  S  R  F  P  K  N  K  R  Q  *  D  Q  Q  Q  Q  Q  L  V  M  M  I  I  K  K  T  R  R  L  G  R  Y  R  R  T  D  L  R  K  K  *  W  G  L  L  A  D  F  R  E  V  R  R  V  *  *  N  L  *  R  K  I  H  H  H  H  H  P  R  K  Q  N  Q  V  W  F  L  V  L  I  K  V  L  *  R  N  Q  S  H  L  N  C  H  F  C  Y  L  G  *  L  L  L  S  R  I  L  I  I  H  I  I  C  I  V  G  L  C  R  G  L  L  M  V  R  L  L  C  F  L  K  V  G  T  G  I  G  *  Y  L  S  G  S  K  N  S  N  V  E  R  K  D  R  Q  W  *  I  L  S  L  *  Y  L  R  R  W  *  K  R  A  L  K  L  E  L  L  Q  F  L  S  R  L  F  V  L  L  S  F  G  L  L  Y  I  Q  A  V  S  F  V  M  A  M  A  C  N  K  K  C  R  K  T  F  V  Q  E   </second_frame>
            <third_frame>   K  Q  I  G  G  Q  N  L  K  G  Q  I  T  V  S  H  F  Y  F  S  S  H  P  L  P  S  S  F  P  N  P  K  F  L  K  K  N  Q  N  H  G  F  C  F  F  L  S  T  L  K  P  S  N  S  N  P  T  S  *  K  I  K  L  S  W  S  I  C  Q  S  Q  P  Q  *  *  C  S  Y  Q  I  S  Y  E  I  I  F  K  L  S  Y  T  N  S  K  I  Q  S  L  *  D  S  W  R  *  R  S  V  *  W  R  R  G  Y  R  E  R  A  K  K  V  D  F  R  R  T  K  G  S  R  I  S  S  S  S  S  *  *  *  *  *  S  R  K  Q  G  D  W  G  D  T  G  G  R  I  *  E  R  N  D  G  V  Y  W  R  I  S  G  R  *  E  G  S  N  E  I  Y  R  E  K  S  T  T  T  T  T  Q  E  N  R  I  K  Y  G  F  W  F  *  S  K  S  C  E  E  T  K  A  T  *  I  A  T  F  V  T  W  D  D  C  Y  C  Q  E  F  *  *  S  I  L  Y  V  L  W  D  C  A  E  D  Y  *  W  *  G  C  C  A  F  *  R  W  E  L  G  *  V  D  I  F  Q  A  R  R  T  R  T  *  R  E  R  T  A  N  G  E  S  *  V  C  D  T  *  E  D  G  R  K  E  L  *  S  L  N  C  F  S  F  *  V  D  C  L  F  F  C  L  L  G  C  C  T  Y  K  L  *  V  L  *  W  Q  W  H  V  I  R  N  A  E  K  L  L  C  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19097" stop="18330"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKIKTMASASSFQLSSLQIQTPPLKKSNFLGQSVNLNLSSSVHTKSAMKSSSNSVTPIAKFNLYEILGGRGLCNGEEGIEKELKKSISEEQKAVGSAAAAASDDDNQENKETGEIPEDGFEKEMMGFTGGFPGGEKGLMKFIEKNPPPPPPKKTESSMVSGFNQSLVKKPKPPELPLLLPGMIAIVKNSNNPYYMYCGIVQRITDGKAAVLFEGGNWDRLISFRLEELERREKGPPMVNLKSVILEKMVEKSSEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="28099" PGL_stop="30523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28099" e_stop="28989"/>
            <exon e_start="29071" e_stop="29154"/>
            <exon e_start="29653" e_stop="30523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.998"/>
          <exon-intron don_prob="0.930" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="28099" e_stop="28989" e_length="891"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="28990" i_stop="29070" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29071" e_stop="29154" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.930" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29155" i_stop="29652" i_length="498"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29653" e_stop="30523" e_length="871"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28099" stop="28989"/>
              <exon start="29071" stop="29154"/>
              <exon start="29653" stop="30523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGGGGTTGACAGCCCATCAATGTTTGGCTCTTTGGACGACGACAGTAGAGGGAAGTCTACCAATCGTCACAGAAGAATCAATGATCCGACTATAGGAAGAATGCAAGGAAATGCTTGGAAGGGGGTTCCAAATTGGCCGTCACCTCTGGCAAATGGTTTCATGCCTTTCCAGCATGGTCCACCTCCTGTTGGTTTCCATCCCGCAATGCAGCAGTTTCCTGGACCACCAATGTTCGGTGTTAGGCCTTCAATGGACTTGAGTCACCCTGGGGTTCCTTACCATATGCCAGATGCAGACCGCTTTTCTGGCCATGGGCGCCCAATGGGTTGGCGAACTCCACTAGATGATTCATGTGGGCCCCCATTGCATGGATGGGATGCTAACAATTTTGGTGAAGAAGCTCACCTTTATGGAAGGCCAGACTGGGACCAGAATAGGACATTGTCCAACAATAGTCGGAGTTGGGAGACAATTGGTGATGTATGGAAAGGGCCAATAAGGGGCACCAGTGTGGAGGTGCCATCCGGTTCACAGAAGGAGGTCTGTTCAATTCAGGGCCCTGATAATTCTTTTGCTTCTCAGTTGGCTCAGCAAGCTCTGGGTGAACAAAAGCAGACAGATCAAGATGCTGAAAGCAATAATATCAGTTTTCAGTCCAGCAGTGTCCCCGGAAGGAACACTCTAGAAGATTTGAAAATTAATCATGAAGAGCAACCAATTGATGTGAAGTCATCAGGGAAAGGAGAGGCTAGTCTTAACAATGTTTACCTCAAAAAGCTTGATATCTCAGCAGATCTGACAGAGCCCGAGTTGTTTGATCGATGTACTAGTTTAATGGATGTTGAGCAGATCTTGACATCTGATAACTCAAAGATCTTATTCTTGGAG : GGTGCTGTAGAATCTAATGTAGTGCTGCCCAGCAAATTTTCAACTGTTCCACTCATTGCTACTGTGGCTGATTCTGTTTTTCAG : AAAGCCATTTCCCTTTACAAGAGGAGGGAGAAAATTGAATTCACAAATGGTGGACATTTTACTTTCTCTGGTCAGCTAGGTGTGTCCTCTCCTGCACCTAAATTAGAGAATTCAAGTTCAGTTCATGGTAAACTTGAATGCTCCGGTCTGGTGGATGATGCGCTAGTAGAAGAGGGTGATGAGGGGACTGATCTCCTTGTTAGTTCTATTAGTTCTGAGGAGGTTGTACTTTCACAAACCACACTTCAGGAGCTGTGTGAGCCAATGGGTTTGAACCCAGGCGAGAAATCAGATCTCCCTTCTAGCTTGGATGAAGGAGCTGTTCCGACTGAGAAATCAGATTTTCCTACTACCATGGATGAAGGAGCTGTCCCAATTGAGAAACCAGATCTCCCTACTAGCATGGATGAAGGAGCTGTTCTGAGTGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGGCCGAGCGAGAAATCAGATCTCCCTACTAGCATGGATGAAGGAGCTGGCATGGAAGCTGATACAGTTGTGGATGTGGCCCAGGAAATTAAAGTTTTAGAAACTGCGGAAGAGGTGGGCCAAACTGATGCCCTTGCTTCTCTGGTGTCTAAAGATTTGATGGGGGCTGATGATGTTGATGCTAAATGTGATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTAATTTGAGTCGGATACAGCATTCTTCTGAAAGTACACATTAAGACAATTTATTTTTCCGAGTTTTTGAAATGCCCCTTTTATATTCCCGTCTTCTGTTTTGTCTGCTTGCTGCTCTTTAGCTAATCAATAAAACTCAGAGTTTTCTTT</gDNA_template>
            <first_frame> S  G  V  D  S  P  S  M  F  G  S  L  D  D  D  S  R  G  K  S  T  N  R  H  R  R  I  N  D  P  T  I  G  R  M  Q  G  N  A  W  K  G  V  P  N  W  P  S  P  L  A  N  G  F  M  P  F  Q  H  G  P  P  P  V  G  F  H  P  A  M  Q  Q  F  P  G  P  P  M  F  G  V  R  P  S  M  D  L  S  H  P  G  V  P  Y  H  M  P  D  A  D  R  F  S  G  H  G  R  P  M  G  W  R  T  P  L  D  D  S  C  G  P  P  L  H  G  W  D  A  N  N  F  G  E  E  A  H  L  Y  G  R  P  D  W  D  Q  N  R  T  L  S  N  N  S  R  S  W  E  T  I  G  D  V  W  K  G  P  I  R  G  T  S  V  E  V  P  S  G  S  Q  K  E  V  C  S  I  Q  G  P  D  N  S  F  A  S  Q  L  A  Q  Q  A  L  G  E  Q  K  Q  T  D  Q  D  A  E  S  N  N  I  S  F  Q  S  S  S  V  P  G  R  N  T  L  E  D  L  K  I  N  H  E  E  Q  P  I  D  V  K  S  S  G  K  G  E  A  S  L  N  N  V  Y  L  K  K  L  D  I  S  A  D  L  T  E  P  E  L  F  D  R  C  T  S  L  M  D  V  E  Q  I  L  T  S  D  N  S  K  I  L  F  L  E  :  G  A  V  E  S  N  V  V  L  P  S  K  F  S  T  V  P  L  I  A  T  V  A  D  S  V  F  Q  :  K  A  I  S  L  Y  K  R  R  E  K  I  E  F  T  N  G  G  H  F  T  F  S  G  Q  L  G  V  S  S  P  A  P  K  L  E  N  S  S  S  V  H  G  K  L  E  C  S  G  L  V  D  D  A  L  V  E  E  G  D  E  G  T  D  L  L  V  S  S  I  S  S  E  E  V  V  L  S  Q  T  T  L  Q  E  L  C  E  P  M  G  L  N  P  G  E  K  S  D  L  P  S  S  L  D  E  G  A  V  P  T  E  K  S  D  F  P  T  T  M  D  E  G  A  V  P  I  E  K  P  D  L  P  T  S  M  D  E  G  A  V  L  S  E  K  S  D  L  P  T  S  M  D  E  G  A  G  P  S  E  K  S  D  L  P  T  S  M  D  E  G  A  G  M  E  A  D  T  V  V  D  V  A  Q  E  I  K  V  L  E  T  A  E  E  V  G  Q  T  D  A  L  A  S  L  V  S  K  D  L  M  G  A  D  D  V  D  A  K  C  D  A  L  P  H  T  D  V  S  T  E  V  F  E  A  V  V  P  E  S  I  E  S  N  L  S  R  I  Q  H  S  S  E  S  T  H  *  D  N  L  F  F  R  V  F  E  M  P  L  L  Y  S  R  L  L  F  C  L  L  A  A  L  *  L  I  N  K  T  Q  S  F  L  </first_frame>
            <second_frame>  L  G  L  T  A  H  Q  C  L  A  L  W  T  T  T  V  E  G  S  L  P  I  V  T  E  E  S  M  I  R  L  *  E  E  C  K  E  M  L  G  R  G  F  Q  I  G  R  H  L  W  Q  M  V  S  C  L  S  S  M  V  H  L  L  L  V  S  I  P  Q  C  S  S  F  L  D  H  Q  C  S  V  L  G  L  Q  W  T  *  V  T  L  G  F  L  T  I  C  Q  M  Q  T  A  F  L  A  M  G  A  Q  W  V  G  E  L  H  *  M  I  H  V  G  P  H  C  M  D  G  M  L  T  I  L  V  K  K  L  T  F  M  E  G  Q  T  G  T  R  I  G  H  C  P  T  I  V  G  V  G  R  Q  L  V  M  Y  G  K  G  Q  *  G  A  P  V  W  R  C  H  P  V  H  R  R  R  S  V  Q  F  R  A  L  I  I  L  L  L  L  S  W  L  S  K  L  W  V  N  K  S  R  Q  I  K  M  L  K  A  I  I  S  V  F  S  P  A  V  S  P  E  G  T  L  *  K  I  *  K  L  I  M  K  S  N  Q  L  M  *  S  H  Q  G  K  E  R  L  V  L  T  M  F  T  S  K  S  L  I  S  Q  Q  I  *  Q  S  P  S  C  L  I  D  V  L  V  *  W  M  L  S  R  S  *  H  L  I  T  Q  R  S  Y  S  W  R :   V  L  *  N  L  M  *  C  C  P  A  N  F  Q  L  F  H  S  L  L  L  W  L  I  L  F  F  R :   K  P  F  P  F  T  R  G  G  R  K  L  N  S  Q  M  V  D  I  L  L  S  L  V  S  *  V  C  P  L  L  H  L  N  *  R  I  Q  V  Q  F  M  V  N  L  N  A  P  V  W  W  M  M  R  *  *  K  R  V  M  R  G  L  I  S  L  L  V  L  L  V  L  R  R  L  Y  F  H  K  P  H  F  R  S  C  V  S  Q  W  V  *  T  Q  A  R  N  Q  I  S  L  L  A  W  M  K  E  L  F  R  L  R  N  Q  I  F  L  L  P  W  M  K  E  L  S  Q  L  R  N  Q  I  S  L  L  A  W  M  K  E  L  F  *  V  R  N  Q  I  S  L  L  A  W  M  K  E  L  G  R  A  R  N  Q  I  S  L  L  A  W  M  K  E  L  A  W  K  L  I  Q  L  W  M  W  P  R  K  L  K  F  *  K  L  R  K  R  W  A  K  L  M  P  L  L  L  W  C  L  K  I  *  W  G  L  M  M  L  M  L  N  V  M  L  F  H  T  L  M  C  L  L  R  Y  L  R  Q  W  C  Q  S  Q  L  S  L  I  *  V  G  Y  S  I  L  L  K  V  H  I  K  T  I  Y  F  S  E  F  L  K  C  P  F  Y  I  P  V  F  C  F  V  C  L  L  L  F  S  *  S  I  K  L  R  V  F  F </second_frame>
            <third_frame>   W  G  *  Q  P  I  N  V  W  L  F  G  R  R  Q  *  R  E  V  Y  Q  S  S  Q  K  N  Q  *  S  D  Y  R  K  N  A  R  K  C  L  E  G  G  S  K  L  A  V  T  S  G  K  W  F  H  A  F  P  A  W  S  T  S  C  W  F  P  S  R  N  A  A  V  S  W  T  T  N  V  R  C  *  A  F  N  G  L  E  S  P  W  G  S  L  P  Y  A  R  C  R  P  L  F  W  P  W  A  P  N  G  L  A  N  S  T  R  *  F  M  W  A  P  I  A  W  M  G  C  *  Q  F  W  *  R  S  S  P  L  W  K  A  R  L  G  P  E  *  D  I  V  Q  Q  *  S  E  L  G  D  N  W  *  C  M  E  R  A  N  K  G  H  Q  C  G  G  A  I  R  F  T  E  G  G  L  F  N  S  G  P  *  *  F  F  C  F  S  V  G  S  A  S  S  G  *  T  K  A  D  R  S  R  C  *  K  Q  *  Y  Q  F  S  V  Q  Q  C  P  R  K  E  H  S  R  R  F  E  N  *  S  *  R  A  T  N  *  C  E  V  I  R  E  R  R  G  *  S  *  Q  C  L  P  Q  K  A  *  Y  L  S  R  S  D  R  A  R  V  V  *  S  M  Y  *  F  N  G  C  *  A  D  L  D  I  *  *  L  K  D  L  I  L  G   : G  C  C  R  I  *  C  S  A  A  Q  Q  I  F  N  C  S  T  H  C  Y  C  G  *  F  C  F  S   : E  S  H  F  P  L  Q  E  E  G  E  N  *  I  H  K  W  W  T  F  Y  F  L  W  S  A  R  C  V  L  S  C  T  *  I  R  E  F  K  F  S  S  W  *  T  *  M  L  R  S  G  G  *  C  A  S  R  R  G  *  *  G  D  *  S  P  C  *  F  Y  *  F  *  G  G  C  T  F  T  N  H  T  S  G  A  V  *  A  N  G  F  E  P  R  R  E  I  R  S  P  F  *  L  G  *  R  S  C  S  D  *  E  I  R  F  S  Y  Y  H  G  *  R  S  C  P  N  *  E  T  R  S  P  Y  *  H  G  *  R  S  C  S  E  *  E  I  R  S  P  Y  *  H  G  *  R  S  W  A  E  R  E  I  R  S  P  Y  *  H  G  *  R  S  W  H  G  S  *  Y  S  C  G  C  G  P  G  N  *  S  F  R  N  C  G  R  G  G  P  N  *  C  P  C  F  S  G  V  *  R  F  D  G  G  *  *  C  *  C  *  M  *  C  S  S  T  H  *  C  V  Y  *  G  I  *  G  S  G  A  R  V  N  *  V  *  F  E  S  D  T  A  F  F  *  K  Y  T  L  R  Q  F  I  F  P  S  F  *  N  A  P  F  I  F  P  S  S  V  L  S  A  C  C  S  L  A  N  Q  *  N  S  E  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28099" stop="28989"/>
                    <exon start="29071" stop="29154"/>
                    <exon start="29653" stop="30417"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1737</number_coding_nucleotides>
                  <number_encoded_amino_acids>579</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGVDSPSMFGSLDDDSRGKSTNRHRRINDPTIGRMQGNAWKGVPNWPSPLANGFMPFQHGPPPVGFHPAMQQFPGPPMFGVRPSMDLSHPGVPYHMPDADRFSGHGRPMGWRTPLDDSCGPPLHGWDANNFGEEAHLYGRPDWDQNRTLSNNSRSWETIGDVWKGPIRGTSVEVPSGSQKEVCSIQGPDNSFASQLAQQALGEQKQTDQDAESNNISFQSSSVPGRNTLEDLKINHEEQPIDVKSSGKGEASLNNVYLKKLDISADLTEPELFDRCTSLMDVEQILTSDNSKILFLEGAVESNVVLPSKFSTVPLIATVADSVFQKAISLYKRREKIEFTNGGHFTFSGQLGVSSPAPKLENSSSVHGKLECSGLVDDALVEEGDEGTDLLVSSISSEEVVLSQTTLQELCEPMGLNPGEKSDLPSSLDEGAVPTEKSDFPTTMDEGAVPIEKPDLPTSMDEGAVLSEKSDLPTSMDEGAGPSEKSDLPTSMDEGAGMEADTVVDVAQEIKVLETAEEVGQTDALASLVSKDLMGADDVDAKCDALPHTDVSTEVFEAVVPESIESNLSRIQHSSESTH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="39498" PGL_stop="41723"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39498" e_stop="39644"/>
            <exon e_start="40807" e_stop="40941"/>
            <exon e_start="41258" e_stop="41295"/>
            <exon e_start="41403" e_stop="41453"/>
            <exon e_start="41642" e_stop="41723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.986"/>
          <exon-intron don_prob="0.977" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="39498" e_stop="39644" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39645" i_stop="40806" i_length="1162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40807" e_stop="40941" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.909">
            <gDNA_intron_boundary i_start="40942" i_stop="41257" i_length="316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41258" e_stop="41295" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41296" i_stop="41402" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41403" e_stop="41453" e_length="51"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41454" i_stop="41641" i_length="188"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="41642" e_stop="41723" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39498" stop="39644"/>
              <exon start="40807" stop="40941"/>
              <exon start="41258" stop="41295"/>
              <exon start="41403" stop="41453"/>
              <exon start="41642" stop="41723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M616-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTTCTCTCTCTATAACTTCACAATTTTTTTGACTCTCTCTCTAAAAAGCTCAGAGATGAATTCTCAGATTTGCAGATCTGCTACAAGAGCAGCTAAGTCACTCCTTTCTGCTTCATCTAAGCAGACTTCTCGTGCTTTTTCAG : GAGGACGAGCAGCAGCTGCAGCAGCCACAGTTTCATTGAGAGGAGTGGTGCCTTCTCTAGCCTCATATGGCAGGAATGAATCTGGAAATGCATCTAGAGCTTGGATTTCTGGTGTGCTTGCCCTTCCTGCAGCAG : CTTACATGCTCCAGGAGCAAGAAGCACATGCTGCCGAG : ATGGAGCGCACCTTTATTGCCATCAAGCCAGATGGAGTACAGAGAGGCCTG : ATTTCAGAAATCGTATCACGGTTTGAGCGCAAGGGCTTCAAGCTGGTTGCAATCAAAGTTGTGATTCCTTCCAAGGAATTTG</gDNA_template>
            <first_frame> S  L  S  L  S  I  T  S  Q  F  F  *  L  S  L  *  K  A  Q  R  *  I  L  R  F  A  D  L  L  Q  E  Q  L  S  H  S  F  L  L  H  L  S  R  L  L  V  L  F  Q  :  E  D  E  Q  Q  L  Q  Q  P  Q  F  H  *  E  E  W  C  L  L  *  P  H  M  A  G  M  N  L  E  M  H  L  E  L  G  F  L  V  C  L  P  F  L  Q  Q  :  L  T  C  S  R  S  K  K  H  M  L  P  R :   W  S  A  P  L  L  P  S  S  Q  M  E  Y  R  E  A  * :   F  Q  K  S  Y  H  G  L  S  A  R  A  S  S  W  L  Q  S  K  L  *  F  L  P  R  N  L </first_frame>
            <second_frame>  L  F  L  S  L  *  L  H  N  F  F  D  S  L  S  K  K  L  R  D  E  F  S  D  L  Q  I  C  Y  K  S  S  *  V  T  P  F  C  F  I  *  A  D  F  S  C  F  F  R :   R  T  S  S  S  C  S  S  H  S  F  I  E  R  S  G  A  F  S  S  L  I  W  Q  E  *  I  W  K  C  I  *  S  L  D  F  W  C  A  C  P  S  C  S  S :   L  H  A  P  G  A  R  S  T  C  C  R   : D  G  A  H  L  Y  C  H  Q  A  R  W  S  T  E  R  P   : D  F  R  N  R  I  T  V  *  A  Q  G  L  Q  A  G  C  N  Q  S  C  D  S  F  Q  G  I   </second_frame>
            <third_frame>   S  F  S  L  Y  N  F  T  I  F  L  T  L  S  L  K  S  S  E  M  N  S  Q  I  C  R  S  A  T  R  A  A  K  S  L  L  S  A  S  S  K  Q  T  S  R  A  F  S   : G  G  R  A  A  A  A  A  A  T  V  S  L  R  G  V  V  P  S  L  A  S  Y  G  R  N  E  S  G  N  A  S  R  A  W  I  S  G  V  L  A  L  P  A  A   : A  Y  M  L  Q  E  Q  E  A  H  A  A  E  :  M  E  R  T  F  I  A  I  K  P  D  G  V  Q  R  G  L  :  I  S  E  I  V  S  R  F  E  R  K  G  F  K  L  V  A  I  K  V  V  I  P  S  K  E  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39500" stop="39644"/>
                    <exon start="40807" stop="40941"/>
                    <exon start="41258" stop="41295"/>
                    <exon start="41403" stop="41453"/>
                    <exon start="41642" stop="41722"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFSLYNFTIFLTLSLKSSEMNSQICRSATRAAKSLLSASSKQTSRAFSGGRAAAAAATVSLRGVVPSLASYGRNESGNASRAWISGVLALPAAAYMLQEQEAHAAEMERTFIAIKPDGVQRGLISEIVSRFERKGFKLVAIKVVIPSKEF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="123549" PGL_stop="125545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123549" e_stop="123819"/>
            <exon e_start="124425" e_stop="124667"/>
            <exon e_start="125246" e_stop="125545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123549" e_stop="123819" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123820" i_stop="124424" i_length="605"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124425" e_stop="124667" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="124668" i_stop="125245" i_length="578"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="125246" e_stop="125545" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123549" stop="123819"/>
              <exon start="124425" stop="124667"/>
              <exon start="125246" stop="125545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8930-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAGTGGAGCAGAGTGGCTGAGAAGATGATCACCGCCACCAGCATGGCCACCGGTGGTAGCAGCTCCGTCTTTCTCTCCGTCCCAAAACTACCATCCCAAAAGTTGCAAATTTTATCTCACAAACAAGTCTTTTTCACAAACAAAAAGTGGTCTACATTGCCCTTTCTCTGTTCTTCTTCAACTCCACTTGTAGAAGAAGAAAATGGGTCGACTGACGATGTCCTTCCAGCTTCGATAAATGAAGAATCTAGTTCAGTTTTACCTCCCGG : AGCATGTAAGGGTTGTGGGAGATTGGAGATTGAAAGTGGTTGTAATGGCGAAGGACGGATACAAGGAGGGATTGCAACAATTCCAGGGTTTGGTTGGTGGCCAATCAAGGCTTACAGGCCGTGCCCTGCGTTTGTTGCTTCTGGTGGTAGGTACAAAAGGTTTGGACAAAGCATGGATGAAGTTGTCTCTGGGAAAGGAGGTAGAGTTAGTACTGTCGGAACTGACGTTGAGGTTCAATCAAG : CACGAAAAAGAACAGAACGAAGAGATCGAAGAGCTAACTGTTGGAATGTAATTTCAAGAGATTGGAGGTTGTTTGGCTGAGCACGGAGTTTAAGCTACTAACTTGGCAGTTTCCTCGTCTCTCTATAGGTTTTTTGGTGATAAAAACTTGAATTGCGTGTATTTATACAAATCCCAAATGGTTATTTGTGTTAGCAATTGTAATCAAGATGAACTATGTTGTTTTATTTCCAACTATACTATTTAGTTTGTTACTGGTCAAGACTTCACCCGTGAAATTATACTAGCTATGTTGTTGTTA</gDNA_template>
            <first_frame> H  S  G  A  E  W  L  R  R  *  S  P  P  P  A  W  P  P  V  V  A  A  P  S  F  S  P  S  Q  N  Y  H  P  K  S  C  K  F  Y  L  T  N  K  S  F  S  Q  T  K  S  G  L  H  C  P  F  S  V  L  L  Q  L  H  L  *  K  K  K  M  G  R  L  T  M  S  F  Q  L  R  *  M  K  N  L  V  Q  F  Y  L  P   : E  H  V  R  V  V  G  D  W  R  L  K  V  V  V  M  A  K  D  G  Y  K  E  G  L  Q  Q  F  Q  G  L  V  G  G  Q  S  R  L  T  G  R  A  L  R  L  L  L  L  V  V  G  T  K  G  L  D  K  A  W  M  K  L  S  L  G  K  E  V  E  L  V  L  S  E  L  T  L  R  F  N  Q   : A  R  K  R  T  E  R  R  D  R  R  A  N  C  W  N  V  I  S  R  D  W  R  L  F  G  *  A  R  S  L  S  Y  *  L  G  S  F  L  V  S  L  *  V  F  W  *  *  K  L  E  L  R  V  F  I  Q  I  P  N  G  Y  L  C  *  Q  L  *  S  R  *  T  M  L  F  Y  F  Q  L  Y  Y  L  V  C  Y  W  S  R  L  H  P  *  N  Y  T  S  Y  V  V  V  </first_frame>
            <second_frame>  T  V  E  Q  S  G  *  E  D  D  H  R  H  Q  H  G  H  R  W  *  Q  L  R  L  S  L  R  P  K  T  T  I  P  K  V  A  N  F  I  S  Q  T  S  L  F  H  K  Q  K  V  V  Y  I  A  L  S  L  F  F  F  N  S  T  C  R  R  R  K  W  V  D  *  R  C  P  S  S  F  D  K  *  R  I  *  F  S  F  T  S  R  :  S  M  *  G  L  W  E  I  G  D  *  K  W  L  *  W  R  R  T  D  T  R  R  D  C  N  N  S  R  V  W  L  V  A  N  Q  G  L  Q  A  V  P  C  V  C  C  F  W  W  *  V  Q  K  V  W  T  K  H  G  *  S  C  L  W  E  R  R  *  S  *  Y  C  R  N  *  R  *  G  S  I  K  :  H  E  K  E  Q  N  E  E  I  E  E  L  T  V  G  M  *  F  Q  E  I  G  G  C  L  A  E  H  G  V  *  A  T  N  L  A  V  S  S  S  L  Y  R  F  F  G  D  K  N  L  N  C  V  Y  L  Y  K  S  Q  M  V  I  C  V  S  N  C  N  Q  D  E  L  C  C  F  I  S  N  Y  T  I  *  F  V  T  G  Q  D  F  T  R  E  I  I  L  A  M  L  L  L </second_frame>
            <third_frame>   Q  W  S  R  V  A  E  K  M  I  T  A  T  S  M  A  T  G  G  S  S  S  V  F  L  S  V  P  K  L  P  S  Q  K  L  Q  I  L  S  H  K  Q  V  F  F  T  N  K  K  W  S  T  L  P  F  L  C  S  S  S  T  P  L  V  E  E  E  N  G  S  T  D  D  V  L  P  A  S  I  N  E  E  S  S  S  V  L  P  P  G :   A  C  K  G  C  G  R  L  E  I  E  S  G  C  N  G  E  G  R  I  Q  G  G  I  A  T  I  P  G  F  G  W  W  P  I  K  A  Y  R  P  C  P  A  F  V  A  S  G  G  R  Y  K  R  F  G  Q  S  M  D  E  V  V  S  G  K  G  G  R  V  S  T  V  G  T  D  V  E  V  Q  S  S :   T  K  K  N  R  T  K  R  S  K  S  *  L  L  E  C  N  F  K  R  L  E  V  V  W  L  S  T  E  F  K  L  L  T  W  Q  F  P  R  L  S  I  G  F  L  V  I  K  T  *  I  A  C  I  Y  T  N  P  K  W  L  F  V  L  A  I  V  I  K  M  N  Y  V  V  L  F  P  T  I  L  F  S  L  L  L  V  K  T  S  P  V  K  L  Y  *  L  C  C  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123551" stop="123819"/>
                    <exon start="124425" stop="124667"/>
                    <exon start="125246" stop="125282"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QWSRVAEKMITATSMATGGSSSVFLSVPKLPSQKLQILSHKQVFFTNKKWSTLPFLCSSSTPLVEEENGSTDDVLPASINEESSSVLPPGACKGCGRLEIESGCNGEGRIQGGIATIPGFGWWPIKAYRPCPAFVASGGRYKRFGQSMDEVVSGKGGRVSTVGTDVEVQSSTKKNRTKRSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="126003" PGL_stop="129173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126003" e_stop="126409"/>
            <exon e_start="127041" e_stop="127146"/>
            <exon e_start="128929" e_stop="129173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126003" e_stop="126409" e_length="407"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.960">
            <gDNA_intron_boundary i_start="126410" i_stop="127040" i_length="631"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127041" e_stop="127146" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="127147" i_stop="128928" i_length="1782"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128929" e_stop="129173" e_length="245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126003" stop="126409"/>
              <exon start="127041" stop="127146"/>
              <exon start="128929" stop="129142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8216-3" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126028" stop="126409"/>
              <exon start="127041" stop="127146"/>
              <exon start="128929" stop="129173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8216-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126028" stop="126409"/>
              <exon start="127041" stop="127146"/>
              <exon start="128929" stop="129036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTCATCTACTTCCCCAATTGAGCGAAATTCCGCCCCTGCAAAAAACCTTTTGAAATTCCACAACTTTCTCCGAAATGGATTCTGAAACTTCCAATGGAATCGAAGAAACGGTACTTGATATCCTCAAAACCTCTAACCTGGAAGAAGTTTCGGAGCAAAAAATCCGAAGAATGGCTTCAGAAAAGCTAGGTCTTGACCTATCCGAACCGACCCGGAAGAAATTTGTCCGGCAGGTGGTGGAGAAGTTCCTTGCTGAAGAACAAGCAAAACGTGAAGCAAATGCTGCTGATGAAGTGAAGGAGGAGGAGGAGGACGACGAGAATGATGAAGAAGAAGAGGACGGCAAAGTGAAAAGCAGCGGTGATAAGGAGTATGATGACGAAGGCGATCTCATCGTTTGCCGA : TTGTCGCAAAAGAGAAGAGTGACTGTTACTGACTTTAGGGGAAAAACTCTGGTGTCGATAAGAGAGTACTACAGCAAAGAGGGCAAGGAGTTGCCTACTTCTAAAG : GGATAAGTTTGACAGCTGAGCAATGGGCAACTTTCAAGAAGAATATTCCTGGAGTTGAACAAGCCATCAAGAAAATGGAGTCGAAGGCTTAGTTTAGTTCTTGATTTCGGTTACATGCAGTAAACTATATTTGAAGACTTAAAACACTAGGAGACATGTTTTTTTGGGTAAATTGGTTTAACTTTTGGTTAACATGCAGTATTATGCCTGCTCTCTTGGCTAATACAGATTTTCTCTAATTTGAG</gDNA_template>
            <first_frame> V  F  I  Y  F  P  N  *  A  K  F  R  P  C  K  K  P  F  E  I  P  Q  L  S  P  K  W  I  L  K  L  P  M  E  S  K  K  R  Y  L  I  S  S  K  P  L  T  W  K  K  F  R  S  K  K  S  E  E  W  L  Q  K  S  *  V  L  T  Y  P  N  R  P  G  R  N  L  S  G  R  W  W  R  S  S  L  L  K  N  K  Q  N  V  K  Q  M  L  L  M  K  *  R  R  R  R  R  T  T  R  M  M  K  K  K  R  T  A  K  *  K  A  A  V  I  R  S  M  M  T  K  A  I  S  S  F  A  D :   C  R  K  R  E  E  *  L  L  L  T  L  G  E  K  L  W  C  R  *  E  S  T  T  A  K  R  A  R  S  C  L  L  L  K  :  G  *  V  *  Q  L  S  N  G  Q  L  S  R  R  I  F  L  E  L  N  K  P  S  R  K  W  S  R  R  L  S  L  V  L  D  F  G  Y  M  Q  *  T  I  F  E  D  L  K  H  *  E  T  C  F  F  G  *  I  G  L  T  F  G  *  H  A  V  L  C  L  L  S  W  L  I  Q  I  F  S  N  L   </first_frame>
            <second_frame>  F  S  S  T  S  P  I  E  R  N  S  A  P  A  K  N  L  L  K  F  H  N  F  L  R  N  G  F  *  N  F  Q  W  N  R  R  N  G  T  *  Y  P  Q  N  L  *  P  G  R  S  F  G  A  K  N  P  K  N  G  F  R  K  A  R  S  *  P  I  R  T  D  P  E  E  I  C  P  A  G  G  G  E  V  P  C  *  R  T  S  K  T  *  S  K  C  C  *  *  S  E  G  G  G  G  G  R  R  E  *  *  R  R  R  G  R  Q  S  E  K  Q  R  *  *  G  V  *  *  R  R  R  S  H  R  L  P   : I  V  A  K  E  K  S  D  C  Y  *  L  *  G  K  N  S  G  V  D  K  R  V  L  Q  Q  R  G  Q  G  V  A  Y  F  *  R :   D  K  F  D  S  *  A  M  G  N  F  Q  E  E  Y  S  W  S  *  T  S  H  Q  E  N  G  V  E  G  L  V  *  F  L  I  S  V  T  C  S  K  L  Y  L  K  T  *  N  T  R  R  H  V  F  L  G  K  L  V  *  L  L  V  N  M  Q  Y  Y  A  C  S  L  G  *  Y  R  F  S  L  I  *  </second_frame>
            <third_frame>   F  H  L  L  P  Q  L  S  E  I  P  P  L  Q  K  T  F  *  N  S  T  T  F  S  E  M  D  S  E  T  S  N  G  I  E  E  T  V  L  D  I  L  K  T  S  N  L  E  E  V  S  E  Q  K  I  R  R  M  A  S  E  K  L  G  L  D  L  S  E  P  T  R  K  K  F  V  R  Q  V  V  E  K  F  L  A  E  E  Q  A  K  R  E  A  N  A  A  D  E  V  K  E  E  E  E  D  D  E  N  D  E  E  E  E  D  G  K  V  K  S  S  G  D  K  E  Y  D  D  E  G  D  L  I  V  C  R  :  L  S  Q  K  R  R  V  T  V  T  D  F  R  G  K  T  L  V  S  I  R  E  Y  Y  S  K  E  G  K  E  L  P  T  S  K   : G  I  S  L  T  A  E  Q  W  A  T  F  K  K  N  I  P  G  V  E  Q  A  I  K  K  M  E  S  K  A  *  F  S  S  *  F  R  L  H  A  V  N  Y  I  *  R  L  K  T  L  G  D  M  F  F  W  V  N  W  F  N  F  W  L  T  C  S  I  M  P  A  L  L  A  N  T  D  F  L  *  F  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C08HBa0202N15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126059" stop="126409"/>
                    <exon start="127041" stop="127146"/>
                    <exon start="128929" stop="129020"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSTTFSEMDSETSNGIEETVLDILKTSNLEEVSEQKIRRMASEKLGLDLSEPTRKKFVRQVVEKFLAEEQAKREANAADEVKEEEEDDENDEEEEDGKVKSSGDKEYDDEGDLIVCRLSQKRRVTVTDFRGKTLVSIREYYSKEGKELPTSKGISLTAEQWATFKKNIPGVEQAIKKMESKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 14 chains have been computed
$ 
$ memory statistics:
$ 13672 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 1953 bytes was the average size of a spliced alignment
$ 10552 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2110 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 14 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 23:36:20
-->
