psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 760 0 0 0 0 0 5 3193 - SGN-E553948 760 0 760 C09HBa0203J14.1 111868 89526 93479 6 138,75,75,66,77,329, 0,138,213,288,354,431, 89526,89777,89950,90185,91971,93150, 361 0 0 0 0 0 0 0 - SGN-E201180 393 32 393 C09HBa0203J14.1 111868 88693 89054 1 361, 0, 88693, 267 17 0 0 1 4 3 40 + SGN-E204223 580 292 580 C09HBa0203J14.1 111868 68342 68666 5 18,24,166,44,32, 292,310,334,500,548, 68342,68369,68421,68590,68634, 585 1 0 0 1 1 3 2845 + SGN-E204591 618 0 587 C09HBa0203J14.1 111868 81828 85259 4 143,168,165,110, 0,143,311,477, 81828,83216,84019,85149, 421 4 0 0 1 2 2 1804 + SGN-E204075 427 0 427 C09HBa0203J14.1 111868 84033 86262 3 151,111,163, 0,153,264, 84033,85149,86099, 40 1 0 0 0 0 0 0 + SGN-E204092 457 412 453 C09HBa0203J14.1 111868 68340 68381 1 41, 412, 68340, 529 0 0 0 0 0 3 2982 - SGN-E209036 529 0 529 C09HBa0203J14.1 111868 89955 93466 4 70,66,77,316, 0,70,136,213, 89955,90185,91971,93150, 32 0 0 0 0 0 1 1 + SGN-E213530 752 347 379 C09HBa0203J14.1 111868 16169 16202 2 23,9, 347,370, 16169,16193, 531 1 0 0 0 0 3 2982 - SGN-E213111 532 0 532 C09HBa0203J14.1 111868 89954 93468 4 71,66,77,318, 0,71,137,214, 89954,90185,91971,93150, 54 3 0 0 0 0 0 0 + SGN-E577899 392 0 57 C09HBa0203J14.1 111868 68413 68470 1 57, 0, 68413, 100 5 0 0 0 0 0 0 - SGN-E577960 387 282 387 C09HBa0203J14.1 111868 68641 68746 1 105, 0, 68641, 234 16 0 0 0 0 1 1 + SGN-E578392 506 256 506 C09HBa0203J14.1 111868 68342 68593 2 245,5, 256,501, 68342,68588, 579 1 0 0 0 0 4 3080 - SGN-E319860 580 0 580 C09HBa0203J14.1 111868 89806 93466 5 46,75,66,77,316, 0,46,121,187,264, 89806,89950,90185,91971,93150, 487 16 0 0 0 0 1 221 - SGN-E319728 542 39 542 C09HBa0203J14.1 111868 13573 14297 2 7,496, 0,7, 13573,13801, 532 1 0 0 0 0 3 3314 + SGN-E310861 533 0 533 C09HBa0203J14.1 111868 99207 103054 4 291,69,66,107, 0,291,360,426, 99207,100823,101815,102947, 533 0 0 0 0 0 3 2982 - SGN-E312666 533 0 533 C09HBa0203J14.1 111868 89954 93469 4 71,66,77,319, 0,71,137,214, 89954,90185,91971,93150, 32 0 0 0 0 0 0 0 - SGN-E308292 556 511 543 C09HBa0203J14.1 111868 96530 96562 1 32, 13, 96530, 520 2 0 0 0 0 3 2982 - SGN-E311619 525 3 525 C09HBa0203J14.1 111868 89965 93469 4 60,66,77,319, 0,60,126,203, 89965,90185,91971,93150, 577 7 0 0 0 0 1 442 + SGN-E379021 584 0 584 C09HBa0203J14.1 111868 87949 88975 2 137,447, 0,137, 87949,88528, 683 18 0 0 1 23 4 976 + SGN-E379736 726 0 724 C09HBa0203J14.1 111868 87236 88913 6 23,134,160,296,80,8, 0,23,157,317,636,716, 87236,87260,87926,88528,88824,88905, 276 1 0 0 1 3 1 3 - SGN-E369533 288 0 280 C09HBa0203J14.1 111868 88995 89275 3 13,5,259, 8,21,29, 88995,89011,89016, 669 0 0 0 2 2 5 3193 - SGN-E369534 671 0 671 C09HBa0203J14.1 111868 89584 93446 8 38,42,39,36,75,66,77,296, 0,39,81,121,157,232,298,375, 89584,89622,89777,89816,89950,90185,91971,93150, 494 1 0 0 0 0 5 2241 - SGN-E370101 495 0 495 C09HBa0203J14.1 111868 27815 30551 6 87,94,86,72,99,57, 0,87,181,267,339,438, 27815,28491,28660,28822,29690,30494, 208 15 0 0 1 1 3 14 - SGN-E370504 599 0 224 C09HBa0203J14.1 111868 44041 44278 4 32,89,93,9, 375,407,496,590, 44041,44074,44164,44269, 208 15 0 0 1 1 3 14 - SGN-E371571 684 0 224 C09HBa0203J14.1 111868 44041 44278 4 32,89,93,9, 460,492,581,675, 44041,44074,44164,44269, 244 15 0 0 0 0 3 40 + SGN-E374844 554 292 551 C09HBa0203J14.1 111868 68342 68641 4 18,24,166,51, 292,310,334,500, 68342,68369,68421,68590, 657 0 0 0 0 0 1 442 + SGN-E374946 669 0 657 C09HBa0203J14.1 111868 87955 89054 2 131,526, 0,131, 87955,88528, 694 3 0 1 0 0 4 3683 + SGN-E374947 698 0 698 C09HBa0203J14.1 111868 81828 86209 5 143,168,166,111,110, 0,143,311,477,588, 81828,83216,84019,85149,86099, 206 13 0 0 1 4 1 3 + SGN-E377238 484 19 242 C09HBa0203J14.1 111868 68508 68730 3 79,44,96, 19,98,146, 68508,68590,68634, 38 0 0 0 1 5 1 7 - SGN-E377316 765 670 713 C09HBa0203J14.1 111868 68701 68746 2 8,30, 52,65, 68701,68716, 72 4 0 0 1 2 1 3 + SGN-E377955 647 475 553 C09HBa0203J14.1 111868 110932 111011 2 20,56, 475,497, 110932,110955, 72 4 0 0 1 2 1 3 + SGN-E377794 657 466 544 C09HBa0203J14.1 111868 110932 111011 2 20,56, 466,488, 110932,110955, 208 15 0 0 1 1 3 14 - SGN-E391217 523 1 225 C09HBa0203J14.1 111868 44041 44278 4 32,89,93,9, 298,330,419,513, 44041,44074,44164,44269, 611 1 0 0 1 2 5 3933 + SGN-E391825 614 0 614 C09HBa0203J14.1 111868 99202 103747 6 296,69,66,122,27,32, 0,296,365,431,553,582, 99202,100823,101815,102947,103687,103715, 68 4 0 0 0 0 0 0 + SGN-E391901 346 266 338 C09HBa0203J14.1 111868 68343 68415 1 72, 266, 68343, 40 1 0 0 0 0 0 0 + SGN-E394807 217 173 214 C09HBa0203J14.1 111868 68340 68381 1 41, 173, 68340, 50 4 0 0 0 0 1 179 + SGN-E395711 710 656 710 C09HBa0203J14.1 111868 44045 44278 2 45,9, 656,701, 44045,44269, 33 0 0 0 0 0 0 0 + SGN-E395898 688 109 142 C09HBa0203J14.1 111868 96528 96561 1 33, 109, 96528, 369 3 0 0 0 0 0 0 - SGN-E396012 381 0 372 C09HBa0203J14.1 111868 88995 89367 1 372, 9, 88995, 532 0 0 0 0 0 0 0 - SGN-E396013 541 0 532 C09HBa0203J14.1 111868 88995 89527 1 532, 9, 88995, 31 0 0 0 0 0 0 0 + SGN-E396221 644 19 50 C09HBa0203J14.1 111868 96528 96559 1 31, 19, 96528, 41 0 0 0 0 0 0 0 + SGN-E398336 459 414 455 C09HBa0203J14.1 111868 68340 68381 1 41, 414, 68340, 80 6 0 0 0 0 0 0 - SGN-E546063 812 698 784 C09HBa0203J14.1 111868 68403 68489 1 86, 28, 68403, 51 0 0 0 1 1 0 0 + SGN-E547334 453 380 432 C09HBa0203J14.1 111868 68342 68393 2 47,4, 380,428, 68342,68389, 51 0 0 0 1 1 0 0 + SGN-E547335 453 380 432 C09HBa0203J14.1 111868 68342 68393 2 47,4, 380,428, 68342,68389, 206 13 0 0 1 4 1 3 + SGN-E233594 310 19 242 C09HBa0203J14.1 111868 68508 68730 3 79,44,96, 19,98,146, 68508,68590,68634, 206 13 0 0 1 4 1 3 + SGN-E233735 514 19 242 C09HBa0203J14.1 111868 68508 68730 3 79,44,96, 19,98,146, 68508,68590,68634, 206 13 0 0 1 4 1 3 + SGN-E237992 666 18 241 C09HBa0203J14.1 111868 68508 68730 3 79,44,96, 18,97,145, 68508,68590,68634, 77 5 0 0 0 0 0 0 - SGN-E240526 430 339 421 C09HBa0203J14.1 111868 68662 68744 1 82, 9, 68662, 206 13 0 0 1 4 1 3 + SGN-E240879 434 19 242 C09HBa0203J14.1 111868 68508 68730 3 79,44,96, 19,98,146, 68508,68590,68634, 206 13 0 0 1 4 1 3 + SGN-E242674 528 19 242 C09HBa0203J14.1 111868 68508 68730 3 79,44,96, 19,98,146, 68508,68590,68634, 414 0 0 0 0 0 2 1599 + SGN-E244633 437 23 437 C09HBa0203J14.1 111868 83214 85227 3 170,166,78, 23,193,359, 83214,84019,85149, 206 13 0 0 1 4 1 3 + SGN-E233074 643 19 242 C09HBa0203J14.1 111868 68508 68730 3 79,44,96, 19,98,146, 68508,68590,68634, 885 1 0 0 0 0 5 3193 - SGN-E727384 886 0 886 C09HBa0203J14.1 111868 89398 93477 6 266,75,75,66,77,327, 0,266,341,416,482,559, 89398,89777,89950,90185,91971,93150, 835 3 0 0 0 0 5 3193 - SGN-E730000 838 0 838 C09HBa0203J14.1 111868 89448 93479 6 216,75,75,66,77,329, 0,216,291,366,432,509, 89448,89777,89950,90185,91971,93150, 848 4 0 1 0 0 6 3194 - SGN-E730229 861 8 861 C09HBa0203J14.1 111868 89423 93470 7 32,208,75,75,66,77,320, 0,32,240,315,390,456,533, 89423,89456,89777,89950,90185,91971,93150, 36 1 0 0 0 0 0 0 - SGN-E718570 593 53 90 C09HBa0203J14.1 111868 96530 96567 1 37, 503, 96530, 44 0 0 0 0 0 0 0 + SGN-E719799 683 554 598 C09HBa0203J14.1 111868 68340 68384 1 44, 554, 68340, 370 1 0 0 0 0 0 0 - SGN-E721107 474 0 371 C09HBa0203J14.1 111868 89046 89417 1 371, 103, 89046, 32 0 0 0 0 0 0 0 - SGN-E721256 585 30 62 C09HBa0203J14.1 111868 96530 96562 1 32, 523, 96530, 41 0 0 0 0 0 0 0 + SGN-E721929 648 554 595 C09HBa0203J14.1 111868 68340 68381 1 41, 554, 68340, 36 1 0 0 0 0 0 0 - SGN-E721952 565 22 59 C09HBa0203J14.1 111868 96530 96567 1 37, 506, 96530, 30 0 0 0 0 0 0 0 - SGN-E722288 737 16 46 C09HBa0203J14.1 111868 96533 96563 1 30, 691, 96533, 36 1 0 0 0 0 0 0 - SGN-E724218 442 3 40 C09HBa0203J14.1 111868 96530 96567 1 37, 402, 96530, 36 1 0 0 0 0 0 0 - SGN-E724375 566 18 55 C09HBa0203J14.1 111868 96530 96567 1 37, 511, 96530, 36 1 0 0 0 0 0 0 - SGN-E724770 588 55 92 C09HBa0203J14.1 111868 96530 96567 1 37, 496, 96530, 36 1 0 0 0 0 0 0 - SGN-E725016 554 22 59 C09HBa0203J14.1 111868 96530 96567 1 37, 495, 96530, 36 1 0 0 0 0 0 0 - SGN-E725199 580 41 78 C09HBa0203J14.1 111868 96530 96567 1 37, 502, 96530, 32 0 0 0 0 0 0 0 - SGN-E732854 500 5 37 C09HBa0203J14.1 111868 96530 96562 1 32, 463, 96530, 34 0 0 0 0 0 0 0 + SGN-E735271 553 96 130 C09HBa0203J14.1 111868 96526 96560 1 34, 96, 96526, 912 0 0 0 0 0 5 3726 + SGN-E738300 916 4 916 C09HBa0203J14.1 111868 84021 88659 6 164,111,188,158,160,131, 4,168,279,467,625,785, 84021,85149,86099,87236,87926,88528, 369 2 0 0 0 0 3 371 - SGN-E697692 371 0 371 C09HBa0203J14.1 111868 89497 90239 4 167,75,75,54, 0,167,242,317, 89497,89777,89950,90185, 914 5 0 2 0 0 6 4341 + SGN-E703155 921 0 921 C09HBa0203J14.1 111868 99169 104431 7 329,69,66,122,129,122,84, 0,329,398,464,586,715,837, 99169,100823,101815,102947,103687,104224,104347, 799 0 0 0 0 0 4 2762 + SGN-E707654 803 4 803 C09HBa0203J14.1 111868 85200 88761 5 60,188,158,160,233, 4,64,252,410,570, 85200,86099,87236,87926,88528, 894 1 0 1 0 0 4 2762 + SGN-E707873 901 5 901 C09HBa0203J14.1 111868 85201 88859 5 59,188,158,160,331, 5,64,252,410,570, 85201,86099,87236,87926,88528, 825 2 0 0 0 0 3 1923 + SGN-E708414 833 6 833 C09HBa0203J14.1 111868 86105 88855 4 182,158,160,327, 6,188,346,506, 86105,87236,87926,88528, 892 2 0 1 1 2 6 3194 - SGN-E708811 897 0 897 C09HBa0203J14.1 111868 89359 93448 7 90,214,75,75,66,77,298, 0,92,306,381,456,522,599, 89359,89450,89777,89950,90185,91971,93150, 821 0 0 0 2 14 5 4353 + SGN-E711032 835 0 835 C09HBa0203J14.1 111868 99178 104352 7 320,69,61,114,129,12,116, 0,320,389,463,577,706,719, 99178,100823,101815,102955,103687,104224,104236, 554 2 0 0 0 0 0 0 - SGN-E716520 562 0 556 C09HBa0203J14.1 111868 88995 89551 1 556, 6, 88995, 549 0 0 0 0 0 3 3314 + SGN-E246537 549 0 549 C09HBa0203J14.1 111868 99203 103066 4 295,69,66,119, 0,295,364,430, 99203,100823,101815,102947, 595 0 0 0 0 0 5 3193 - SGN-E247293 595 0 595 C09HBa0203J14.1 111868 89658 93446 6 6,75,75,66,77,296, 0,6,81,156,222,299, 89658,89777,89950,90185,91971,93150, 242 16 0 0 2 6 2 24 - SGN-E249253 618 354 618 C09HBa0203J14.1 111868 68465 68747 4 127,41,4,86, 0,132,173,178, 68465,68615,68657,68661, 452 1 0 0 5 5 2 2822 - SGN-E246361 458 0 458 C09HBa0203J14.1 111868 90194 93469 8 57,77,122,20,15,30,79,53, 0,57,134,257,278,294,325,405, 90194,91971,93150,93272,93292,93307,93337,93416, 303 18 0 0 1 1 3 19 - SGN-E253695 540 218 540 C09HBa0203J14.1 111868 68407 68747 5 180,10,41,4,86, 0,180,190,231,236, 68407,68588,68615,68657,68661, 54 2 0 0 0 0 0 0 + SGN-E256217 514 0 56 C09HBa0203J14.1 111868 68688 68744 1 56, 0, 68688, 405 0 0 0 0 0 4 1652 - SGN-E259041 405 0 405 C09HBa0203J14.1 111868 28494 30551 5 91,86,72,99,57, 0,91,177,249,348, 28494,28660,28822,29690,30494, 400 2 0 0 0 0 4 1652 - SGN-E264459 421 0 402 C09HBa0203J14.1 111868 28493 30547 5 92,86,72,99,53, 19,111,197,269,368, 28493,28660,28822,29690,30494, 99 4 0 0 2 44 2 22 - SGN-E217478 385 218 365 C09HBa0203J14.1 111868 68621 68746 4 20,36,19,28, 20,41,120,139, 68621,68641,68678,68718, 103 4 0 0 2 44 2 22 - SGN-E229134 397 230 381 C09HBa0203J14.1 111868 68617 68746 4 24,36,19,28, 16,41,120,139, 68617,68641,68678,68718, 335 0 0 0 0 0 1 14 - SGN-E229344 345 0 335 C09HBa0203J14.1 111868 89008 89357 2 8,327, 10,18, 89008,89030, 40 0 0 0 0 0 0 0 + SGN-E233998 377 319 359 C09HBa0203J14.1 111868 68344 68384 1 40, 319, 68344, 39 0 0 0 0 0 0 0 + SGN-E234253 351 293 332 C09HBa0203J14.1 111868 68344 68383 1 39, 293, 68344, 442 7 0 0 0 0 1 1245 + SGN-E273082 449 0 449 C09HBa0203J14.1 111868 81672 83366 2 299,150, 0,299, 81672,83216, 208 15 0 0 1 1 3 14 - SGN-E280629 530 0 224 C09HBa0203J14.1 111868 44041 44278 4 32,89,93,9, 306,338,427,521, 44041,44074,44164,44269, 38 0 0 0 0 0 1 264 - SGN-E278747 597 168 206 C09HBa0203J14.1 111868 78461 78763 2 25,13, 391,416, 78461,78750, 490 0 0 0 0 0 3 2752 + SGN-E278021 490 0 490 C09HBa0203J14.1 111868 84132 87374 4 53,111,188,138, 0,53,164,352, 84132,85149,86099,87236, 372 0 0 0 0 0 0 0 + SGN-E279714 527 17 389 C09HBa0203J14.1 111868 88952 89324 1 372, 17, 88952, 586 0 0 0 0 0 5 3193 - SGN-E303032 586 0 586 C09HBa0203J14.1 111868 89577 93356 6 87,75,75,66,77,206, 0,87,162,237,303,380, 89577,89777,89950,90185,91971,93150, 713 1 0 0 0 0 4 3683 + SGN-E332181 738 0 714 C09HBa0203J14.1 111868 81889 86286 5 82,168,166,111,187, 0,82,250,416,527, 81889,83216,84019,85149,86099, 706 0 0 0 0 0 4 3683 + SGN-E332060 706 0 706 C09HBa0203J14.1 111868 81889 86278 5 82,168,166,111,179, 0,82,250,416,527, 81889,83216,84019,85149,86099, 33 0 0 0 0 0 0 0 + SGN-E326629 614 78 111 C09HBa0203J14.1 111868 96528 96561 1 33, 78, 96528, 768 0 0 0 0 0 1 796 - SGN-E326806 768 0 768 C09HBa0203J14.1 111868 28210 29774 2 684,84, 0,684, 28210,29690, 38 1 0 0 1 21 1 1 - SGN-E316590 734 117 177 C09HBa0203J14.1 111868 66814 66854 2 31,8, 557,609, 66814,66846, 32 0 0 0 0 0 0 0 + SGN-E336439 424 328 360 C09HBa0203J14.1 111868 96529 96561 1 32, 328, 96529, 503 0 0 0 0 0 3 3314 + SGN-E346462 521 0 503 C09HBa0203J14.1 111868 99253 103070 4 245,69,66,123, 0,245,314,380, 99253,100823,101815,102947, 38 1 0 0 1 21 1 1 - SGN-E340377 715 83 143 C09HBa0203J14.1 111868 66814 66854 2 31,8, 572,624, 66814,66846, 649 0 0 0 2 2 4 3284 + SGN-E348675 651 0 651 C09HBa0203J14.1 111868 84104 88037 7 81,111,188,158,66,5,40, 0,81,192,380,538,605,611, 84104,85149,86099,87236,87926,87992,87997, 667 0 0 0 0 0 4 586 - SGN-E349213 677 0 667 C09HBa0203J14.1 111868 104780 106033 5 310,96,95,79,87, 10,320,416,511,590, 104780,105184,105399,105738,105946, 50 1 0 0 0 0 0 0 + SGN-E362032 430 379 430 C09HBa0203J14.1 111868 68342 68393 1 51, 379, 68342,