psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 647 0 0 0 0 0 3 1448 + SGN-E553951 759 0 647 C09SLe0019J03.3 44036 20616 22711 4 72,200,135,240, 0,72,272,407, 20616,21644,22221,22471, 645 2 0 0 0 0 3 1448 + SGN-E554578 717 0 647 C09SLe0019J03.3 44036 20616 22711 4 72,200,135,240, 0,72,272,407, 20616,21644,22221,22471, 584 1 0 0 0 0 3 3799 + SGN-E688842 585 0 585 C09SLe0019J03.3 44036 30746 35130 4 206,53,101,225, 0,206,259,360, 30746,31040,31676,34905, 258 15 0 0 3 14 3 42 + SGN-E204223 580 293 580 C09SLe0019J03.3 44036 39080 39395 6 17,26,103,59,43,25, 293,310,336,445,510,555, 39080,39106,39160,39263,39327,39370, 37 1 0 0 0 0 0 0 + SGN-E204092 457 415 453 C09SLe0019J03.3 44036 39080 39118 1 38, 415, 39080, 97 8 0 0 0 0 0 0 - SGN-E577960 387 282 387 C09SLe0019J03.3 44036 39370 39475 1 105, 0, 39370, 206 11 0 0 3 31 2 25 + SGN-E578392 506 257 505 C09SLe0019J03.3 44036 39080 39322 4 66,5,84,62, 257,324,336,443, 39080,39146,39159,39260, 56 3 0 0 0 0 0 0 - SGN-E577735 739 244 303 C09SLe0019J03.3 44036 5013 5072 1 59, 436, 5013, 237 0 0 0 0 0 1 3167 + SGN-E310053 453 0 237 C09SLe0019J03.3 44036 40632 44036 2 168,69, 0,168, 40632,43967, 570 2 0 0 1 1 3 3799 + SGN-E369165 573 0 573 C09SLe0019J03.3 44036 30774 35145 5 178,53,101,215,25, 0,178,231,332,548, 30774,31040,31676,34905,35120, 151 10 0 0 0 0 0 0 + SGN-E373950 548 30 191 C09SLe0019J03.3 44036 40639 40800 1 161, 30, 40639, 36 1 0 0 0 0 0 0 + SGN-E375052 649 608 645 C09SLe0019J03.3 44036 39081 39118 1 37, 608, 39081, 32 1 0 0 0 0 0 0 + SGN-E375053 640 607 640 C09SLe0019J03.3 44036 39081 39114 1 33, 607, 39081, 234 14 0 0 2 12 3 42 + SGN-E374844 554 293 553 C09SLe0019J03.3 44036 39080 39370 5 17,26,103,59,43, 293,310,336,445,510, 39080,39106,39160,39263,39327, 112 5 0 0 2 7 2 7 - SGN-E376754 662 531 655 C09SLe0019J03.3 44036 39351 39475 3 9,60,48, 7,17,83, 39351,39362,39427, 217 10 0 0 3 14 1 5 + SGN-E377238 484 1 242 C09SLe0019J03.3 44036 39227 39459 4 36,59,43,89, 1,43,108,153, 39227,39263,39327,39370, 86 7 0 0 0 0 1 21 - SGN-E377316 765 670 763 C09SLe0019J03.3 44036 39361 39475 2 60,33, 2,62, 39361,39442, 67 5 0 0 0 0 0 0 + SGN-E391901 346 266 338 C09SLe0019J03.3 44036 39080 39152 1 72, 266, 39080, 37 1 0 0 0 0 0 0 + SGN-E394807 217 176 214 C09SLe0019J03.3 44036 39080 39118 1 38, 176, 39080, 38 0 0 0 0 0 0 0 + SGN-E398336 459 417 455 C09SLe0019J03.3 44036 39080 39118 1 38, 417, 39080, 370 0 0 0 0 0 1 253 - SGN-E541940 405 0 370 C09SLe0019J03.3 44036 23125 23748 2 274,96, 35,309, 23125,23652, 372 0 0 0 0 0 1 253 - SGN-E541942 382 0 372 C09SLe0019J03.3 44036 23123 23748 2 276,96, 10,286, 23123,23652, 50 0 0 0 1 1 0 0 + SGN-E547334 453 381 432 C09SLe0019J03.3 44036 39080 39130 2 46,4, 381,428, 39080,39126, 50 0 0 0 1 1 0 0 + SGN-E547335 453 381 432 C09SLe0019J03.3 44036 39080 39130 2 46,4, 381,428, 39080,39126, 584 1 0 0 0 0 3 3799 + SGN-E551058 585 0 585 C09SLe0019J03.3 44036 30746 35130 4 206,53,101,225, 0,206,259,360, 30746,31040,31676,34905, 515 1 0 0 0 0 3 3799 + SGN-E200565 523 7 523 C09SLe0019J03.3 44036 30830 35145 4 122,53,101,240, 7,129,182,283, 30830,31040,31676,34905, 217 10 0 0 3 14 1 5 + SGN-E233594 310 1 242 C09SLe0019J03.3 44036 39227 39459 4 36,59,43,89, 1,43,108,153, 39227,39263,39327,39370, 217 10 0 0 3 14 1 5 + SGN-E233735 514 1 242 C09SLe0019J03.3 44036 39227 39459 4 36,59,43,89, 1,43,108,153, 39227,39263,39327,39370, 217 10 0 0 3 14 1 5 + SGN-E237992 666 0 241 C09SLe0019J03.3 44036 39227 39459 4 36,59,43,89, 0,42,107,152, 39227,39263,39327,39370, 36 1 0 0 0 0 0 0 + SGN-E227060 564 523 560 C09SLe0019J03.3 44036 39081 39118 1 37, 523, 39081, 391 1 0 0 0 0 3 3799 + SGN-E240678 392 0 392 C09SLe0019J03.3 44036 30774 34965 4 178,53,101,60, 0,178,231,332, 30774,31040,31676,34905, 217 10 0 0 3 14 1 5 + SGN-E240879 434 1 242 C09SLe0019J03.3 44036 39227 39459 4 36,59,43,89, 1,43,108,153, 39227,39263,39327,39370, 217 10 0 0 3 14 1 5 + SGN-E242674 528 1 242 C09SLe0019J03.3 44036 39227 39459 4 36,59,43,89, 1,43,108,153, 39227,39263,39327,39370, 538 3 0 0 0 0 3 3799 + SGN-E242690 541 0 541 C09SLe0019J03.3 44036 30774 35114 4 178,53,101,209, 0,178,231,332, 30774,31040,31676,34905, 217 10 0 0 3 14 1 5 + SGN-E233074 643 1 242 C09SLe0019J03.3 44036 39227 39459 4 36,59,43,89, 1,43,108,153, 39227,39263,39327,39370, 655 2 0 0 1 1 4 3801 + SGN-E719447 679 21 679 C09SLe0019J03.3 44036 30824 35282 5 13,113,53,101,377, 21,35,148,201,302, 30824,30839,31040,31676,34905, 671 1 0 0 0 0 3 3799 + SGN-E718274 721 12 684 C09SLe0019J03.3 44036 30814 35285 4 138,53,101,380, 12,150,203,304, 30814,31040,31676,34905, 41 0 0 0 0 0 0 0 + SGN-E719799 683 557 598 C09SLe0019J03.3 44036 39080 39121 1 41, 557, 39080, 272 3 0 0 0 0 1 3167 + SGN-E721534 558 14 289 C09SLe0019J03.3 44036 40594 44036 2 206,69, 14,220, 40594,43967, 38 0 0 0 0 0 0 0 + SGN-E721929 648 557 595 C09SLe0019J03.3 44036 39080 39118 1 38, 557, 39080, 249 2 0 0 0 0 1 3167 + SGN-E723364 483 14 265 C09SLe0019J03.3 44036 40618 44036 2 182,69, 14,196, 40618,43967, 668 1 0 0 0 0 4 3957 + SGN-E713314 669 0 669 C09SLe0019J03.3 44036 30824 35450 5 128,53,101,380,7, 0,128,181,282,662, 30824,31040,31676,34905,35443, 261 0 0 0 0 0 1 3167 + SGN-E713411 480 0 261 C09SLe0019J03.3 44036 40608 44036 2 192,69, 0,192, 40608,43967, 652 9 0 0 0 0 3 3799 + SGN-E713490 669 1 662 C09SLe0019J03.3 44036 30825 35285 4 127,53,101,380, 1,128,181,282, 30825,31040,31676,34905, 233 0 0 0 0 0 1 3167 + SGN-E715271 463 0 233 C09SLe0019J03.3 44036 40636 44036 2 164,69, 0,164, 40636,43967, 46 1 0 0 0 0 0 0 + SGN-E256217 514 9 56 C09SLe0019J03.3 44036 39426 39473 1 47, 9, 39426, 629 1 0 0 0 0 3 3799 + SGN-E259767 630 0 630 C09SLe0019J03.3 44036 30747 35176 4 205,53,101,271, 0,205,258,359, 30747,31040,31676,34905, 254 5 0 0 0 0 1 88 + SGN-E259768 440 0 259 C09SLe0019J03.3 44036 30747 31094 2 205,54, 0,205, 30747,31040, 34 1 0 0 0 0 0 0 - SGN-E268353 465 386 421 C09SLe0019J03.3 44036 891 926 1 35, 44, 891, 39 1 0 0 1 3 1 5 - SGN-E217478 385 218 261 C09SLe0019J03.3 44036 39430 39475 2 7,33, 124,134, 39430,39442, 102 5 0 0 1 44 3 24 - SGN-E229134 397 230 381 C09SLe0019J03.3 44036 39344 39475 4 25,12,37,33, 16,41,97,134, 39344,39370,39384,39442, 124 4 0 0 0 0 1 3167 + SGN-E227988 348 0 128 C09SLe0019J03.3 44036 40741 44036 2 59,69, 0,59, 40741,43967, 40 0 0 0 0 0 0 0 + SGN-E233998 377 319 359 C09SLe0019J03.3 44036 39081 39121 1 40, 319, 39081, 39 0 0 0 0 0 0 0 + SGN-E234253 351 293 332 C09SLe0019J03.3 44036 39081 39120 1 39, 293, 39081, 570 1 0 0 1 1 3 2070 + SGN-E269922 572 0 572 C09SLe0019J03.3 44036 17054 19695 5 44,94,204,161,68, 0,45,139,343,504, 17054,17098,17469,18746,19627, 627 4 0 0 0 0 3 3799 + SGN-E295102 631 0 631 C09SLe0019J03.3 44036 30830 35260 4 122,53,101,355, 0,122,175,276, 30830,31040,31676,34905, 227 2 0 0 0 0 2 3168 + SGN-E291733 394 0 229 C09SLe0019J03.3 44036 40639 44036 3 161,10,58, 0,161,171, 40639,43967,43978, 368 3 0 0 0 0 1 253 - SGN-E300815 381 0 371 C09SLe0019J03.3 44036 23123 23747 2 276,95, 10,286, 23123,23652, 259 0 0 0 0 0 1 3167 + SGN-E305533 548 0 259 C09SLe0019J03.3 44036 40610 44036 2 190,69, 0,190, 40610,43967, 202 6 0 0 1 20 4 4431 - SGN-E325544 660 432 660 C09SLe0019J03.3 44036 8233 12872 5 27,22,4,98,57, 0,27,49,73,171, 8233,8291,8314,8325,12815, 196 6 0 0 1 20 4 4431 - SGN-E328133 654 432 654 C09SLe0019J03.3 44036 8239 12872 5 21,22,4,98,57, 0,21,43,67,165, 8239,8291,8314,8325,12815, 323 3 0 173 0 0 0 0 - SGN-E323811 499 0 499 C09SLe0019J03.3 44036 29895 30394 1 499, 0, 29895, 257 0 0 0 0 0 1 3167 + SGN-E342983 470 0 257 C09SLe0019J03.3 44036 40612 44036 2 188,69, 0,188, 40612,43967, 552 7 0 0 1 1 4 2159 - SGN-E365306 560 0 560 C09SLe0019J03.3 44036 25052 27770 6 139,76,249,14,54,27, 0,139,215,464,479,533, 25052,25899,26731,27225,27239,27743, 49 1 0 0 0 0 0 0 + SGN-E362032 430 380 430 C09SLe0019J03.3 44036 39080 39130 1 50, 380, 39080, 607 17 0 0 1 1 1 12 + SGN-E696286 849 0 625 C09SLe0019J03.3 44036 43400 44036 3 14,69,541, 0,14,84, 43400,43426,43495, 766 19 0 0 2 10 3 23 + SGN-E692446 818 23 818 C09SLe0019J03.3 44036 42861 43669 5 149,207,186,69,174, 23,181,388,574,644, 42861,43020,43228,43426,43495,